Citrus Sinensis ID: 046373

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
Protein Sequence
MNPISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSRELTLSNVNFQEEVRNLSKDNGRGQYPDGVICKRAQ
Secondary Structure (PSIPRED)
cccccccHHHHHHHHcccHHHHHHHHccccHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHccccccccHHHHHHHHcccHHHHHHHHHccccccHHHHHcccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHccHHHHHHHHcccHHHHHHHHHcccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccEEcccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccHccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHcccccccccccccccccHHHHHHHccc
Coil and Loop (DISEMBL)
mnpisiypnffnaaaagdaetfkrnttSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSlllqvnakgdtplhlaakfghSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILtkqdpdypysenkygktslymAAEGRYSEMVIELLENCtsvshegpngkTALHAAAMHFYfendqtaadiaDKDRKMTALHLAAGQGHARTVETILfldpkcyelvdhrgwNFLHYAMVSFKLHELKILLKnplarsliyegdnngntplhVLAAIRPKEFFKIKVRydaggnygavnkqnvSVTDVLIYGsreltlsnvNFQEEVRNLskdngrgqypdgvickraq
Flexible Loop (DISEMBL)
MNPISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTaqtkntilhiniisqkrkngSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILtkqdpdypysenkygktSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLaagqghartVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGgnygavnkqnvSVTDVLIYGSRELTLSNVNFQEEvrnlskdngrgqypdgvickraq
Low Complexity Region (SEG)
MNPISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSRELTLSNVNFQEEVRNLSKDNGRGQYPDGVICKRAQ
Disordered region (IsUnstruct)
*****IYPNFFNAAAAG*************IESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSRELTLSNVNFQ*************************
Disordered Region (DISOPRED)
*NPISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSRELTLSNVNFQEEVRNLSKDNGRGQYPDGVICKR**
Disordered Region (DISEMBL)
MNPISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSRELTLSNVNFQEEVRNLSKDNGRGQYPDGVICKRAQ
Disordered Region (DISPRO)
***ISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSRELTLSNVNFQEEVRN******RGQYPDGVICKRA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSRELTLSNVNFQEEVRNLSKDNGRGQYPDGVICKRAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	364	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.681	0.473	0.255	4e-14
Q502K3	1071	Serine/threonine-protein	no	no	0.700	0.238	0.252	3e-12
P57078	832	Receptor-interacting seri	yes	no	0.516	0.225	0.261	7e-11
Q9XZC0	1413	Alpha-latrocrustotoxin-Lt	N/A	no	0.829	0.213	0.259	9e-11
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.678	0.131	0.299	1e-10
Q9ERK0	786	Receptor-interacting seri	no	no	0.450	0.208	0.324	1e-10
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.576	0.107	0.270	1e-10
Q63618	837	Espin OS=Rattus norvegicu	no	no	0.480	0.209	0.273	2e-10
Q69ZU8	712	Ankyrin repeat domain-con	no	no	0.582	0.297	0.268	2e-10
O44997	1425	Death-associated protein	yes	no	0.414	0.105	0.329	3e-10

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 131/297 (44%), Gaps = 49/297 (16%)

Query: 35  LTAQTKNTILHINIISQKRKNGSTKFIGEMLKK-----CPSLLLQVNAKGDTPLHLAAKF 89
           +TA+  +T LH  +     + G T  + EM+ +        LL + N  G+T L++AA++
Sbjct: 12  MTARRDDTPLHTAV-----REGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEY 66

Query: 90  GHSNIVSFLIERAKLAAWQMMRMTNNEKN--TALHEAVCHGNVQVVKILTKQDPDYPYSE 147
           G++++V  L++ +       +      KN   A H A  +GN+QV+ +L + +P+  ++ 
Sbjct: 67  GYTDMVKILMKHS-----DSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTF 121

Query: 148 NKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEG-PNGKTALHAAAMHFYFENDQTAADI 206
           +    T+L+ AA   + E+V  LL+    ++     NGKTALH+A               
Sbjct: 122 DSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSA--------------- 166

Query: 207 ADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILL 266
                        A  GH   V+ ++         VD +G   LH A+       + +L+
Sbjct: 167 -------------ARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLM 213

Query: 267 KNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDV 323
           +     SLI   DN GNTPLH+       E  +  ++Y       AVNK   +  D+
Sbjct: 214 EAD--GSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRV-AVNKSGETALDI 267

Arabidopsis thaliana (taxid: 3702)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 121/269 (44%), Gaps = 14/269 (5%)

Query: 47  NIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAA 106
           +++    + G ++ +  +L +  S LL  +     PLH+AA  GHS  +  L+       
Sbjct: 614 SVLYLASQRGHSRCVELLLSQSASCLLAEHRSKWGPLHVAAANGHSECLRMLL--CSEGG 671

Query: 107 WQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEM 166
             ++ +T+ E  T L  AV  G+   V +L ++    P  +++ G+T+L+  A     + 
Sbjct: 672 ADLVNVTDAEGQTPLMLAVLGGHTDCVHLLLERGA-CPDMKDRRGRTALHRGAVMGREDC 730

Query: 167 VIELLENCTSVSHEGPNGKTALHAAAMHFY---FENDQTAADIADKDRKMT------ALH 217
           +  LL +  SV      G++ALH AA   +     N  +AAD +     +T        H
Sbjct: 731 LTALLSHNVSVLSRDFQGRSALHLAASCGHADILSNLLSAADHSQPQDPLTDRHGYTPAH 790

Query: 218 LAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYE 277
            AA  GH   +E +L L P    + +   +  LH A+++      ++LL++ +  SL+  
Sbjct: 791 WAAYHGHEDCLEVLLELKP--CSIQEGNPFTPLHCALINGHSGSAELLLESSVCNSLVNI 848

Query: 278 GDNNGNTPLHVLAAIRPKEFFKIKVRYDA 306
            D  G TPLH  A        ++ +R  A
Sbjct: 849 RDAKGRTPLHAAAVAEDVAGLQLVLRQGA 877

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|P57078|RIPK4_HUMAN Receptor-interacting serine/threonine-protein kinase 4 OS=Homo sapiens GN=RIPK4 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 45/233 (19%)

Query: 74  QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
           +V+ +G TP+H+A + G  NIV  L+ R    + Q       +    LH A   G++ +V
Sbjct: 580 EVDFEGRTPMHVACQHGQENIVRILLRRGVDVSLQ-----GKDAWLPLHYAAWQGHLPIV 634

Query: 134 KILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS--------------- 178
           K+L KQ      ++   G+T L++AA+  +  +   L++ C+ V+               
Sbjct: 635 KLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYRVARILIDLCSDVNVCSLLAQTPLHVAAE 694

Query: 179 -----------HEG-------PNGKTALHAAAMHFYFEN-----DQTAADIADKDRKMTA 215
                      H G        +G TALH AA + +        ++ A  +A      TA
Sbjct: 695 TGHTSTARLLLHRGAGKEAMTSDGYTALHLAARNGHLATVKLLVEEKADVLARGPLNQTA 754

Query: 216 LHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKN 268
           LHLAA  GH+  VE ++  D    +L D +G + LH A        ++ LL++
Sbjct: 755 LHLAAAHGHSEVVEELVSAD--VIDLFDEQGLSALHLAAQGRHAQTVETLLRH 805

Involved in stratified epithelial development. It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9XZC0|LCTA_LATTR Alpha-latrocrustotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=2 SV=2

 Score = 68.2 bits (165), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 163/370 (44%), Gaps = 68/370 (18%)

Query: 34  LLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSN 93
           LL    KN    ++I S+++ N   KF   +L+K   + ++  A   TPLHLAA+   + 
Sbjct: 521 LLNVPDKNGYTPLHIASERKNNDFVKF---LLEKGADVNVRTFANELTPLHLAARQDFTI 577

Query: 94  IVSFLIERAKL----------------------AAWQMMRMT-------NNEKNTALHEA 124
           IV  L+E+  +                      AA  ++  T       +N   T LH A
Sbjct: 578 IVKTLMEKRGIDVNAKERAGFTPLHLSITSNSRAARTLINETPAGINIKSNSGLTPLHLA 637

Query: 125 VCHGNVQVVKILTKQDPDYPYSE-NKYGKTSLYMAAEGRYSEMV--IELLENCTSVSHEG 181
           V   N+   K+L K +     +E +  G T L+      Y+ M+  +E ++  TS     
Sbjct: 638 VLQNNLSAAKVLVKSNKKVKLNEMDNNGMTPLH------YASMLGNLEFVKYFTSEQGID 691

Query: 182 PNGK------TALHAAAMHFYFENDQTA-----ADIADK-DRKMTALHLAAGQGHARTVE 229
            N K      T LH A +   F+  Q+       DI+ + D+ +T LHLAA  G+++ V+
Sbjct: 692 VNAKTKVKNWTPLHLAILFKKFDVAQSLLQVRNIDISTRADQAITPLHLAAATGNSQIVK 751

Query: 230 TILFLDPKCYELVDHR---GWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPL 286
           TIL        +VD     G+  LH A+++      + L+      + I    N+G+TPL
Sbjct: 752 TIL----NSGAVVDQETANGFTALHLAIMNPNTETPQFLIAKG---ANINAKTNDGSTPL 804

Query: 287 HVLAAIRPKEFFKIKVRYDAGGNYGAVNKQN-VSVTDVLIYGSRELTLSNVNFQEEVRNL 345
           H  AA+     F++ +  D G N  A N  N + + + ++ G   L +  +  +++   +
Sbjct: 805 HFAAALGKTNIFQLLM--DKGANIKAENLINQMPIHEAVVNG--HLAIVKMLIEQDSSLM 860

Query: 346 SKDNGRGQYP 355
           +  N R +YP
Sbjct: 861 NAKNMRDEYP 870

Crustacean-selective presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 119/264 (45%), Gaps = 17/264 (6%)

Query: 61  IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
           + E+L K  + +  V   G TPLH+A+  GH  IV  L++R          ++N +  T 
Sbjct: 386 VMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASP-----NVSNVKVETP 440

Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
           LH A   G+ +V K L  Q+     ++ K  +T L+ AA   ++ MV  LLEN  + +  
Sbjct: 441 LHMAARAGHTEVAKYLL-QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 499

Query: 181 GPNGKTALHAAAMHFYFEN-----DQTAADIADKDRKMTALHLAAGQGHARTVETILFLD 235
              G T LH AA   + E      ++ A+      +  T LH+AA  G  R  E +L  D
Sbjct: 500 TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 559

Query: 236 PKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPK 295
                     G   LH A+    L  +K+LL  P   S  +    NG TPLH+ A     
Sbjct: 560 AHP-NAAGKNGLTPLHVAVHHNNLDIVKLLL--PRGGS-PHSPAWNGYTPLHIAAKQNQV 615

Query: 296 EFFKIKVRYDAGGNYGAVNKQNVS 319
           E  +  ++Y  GG+  A + Q V+
Sbjct: 616 EVARSLLQY--GGSANAESVQGVT 637

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 15/179 (8%)

Query: 61  IGEMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEK 117
           I ++L K P +   VNA+   G TPLHLAA+ GH  +   LI+         + + + + 
Sbjct: 587 IVKLLAKQPGV--SVNAQTLDGRTPLHLAAQRGHYRVARILIDLCS-----DVNICSLQA 639

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSV 177
            T LH A   G+    ++L  +        ++ G T+L++AA+  +   V  L+E    V
Sbjct: 640 QTPLHVAAETGHTSTARLLLHRGAGKEALTSE-GYTALHLAAQNGHLATVKLLIEEKADV 698

Query: 178 SHEGPNGKTALHAAAMHFYFE--NDQTAADIAD--KDRKMTALHLAAGQGHARTVETIL 232
              GP  +TALH AA   + E   +  +AD+ D   ++ ++ALHLAA   H++TVET+L
Sbjct: 699 MARGPLNQTALHLAAARGHSEVVEELVSADLIDLSDEQGLSALHLAAQGRHSQTVETLL 757

Involved in stratified epithelial development (By similarity). It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 30/240 (12%)

Query: 67  KCPSLLLQVNAKGD-------TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
           K  +LLLQ +   D       TPLH+AA +G+ N+ + L+ RA       +  T     T
Sbjct: 199 KAAALLLQNDTNADVESKSGFTPLHIAAHYGNINVATLLLNRAA-----AVDFTARNDIT 253

Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH 179
            LH A   GN  +VK+L  +      ++ + G T L+  A   + ++V  LL+    +  
Sbjct: 254 PLHVASKRGNANMVKLLLDRGAKI-DAKTRDGLTPLHCGARSGHEQVVEMLLDRSAPILS 312

Query: 180 EGPNGKTALHAA-------AMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETIL 232
           +  NG + LH A        +    +++    D+ +    +TALH+AA  GH +  + +L
Sbjct: 313 KTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTND--YLTALHVAAHCGHYKVAKVLL 370

Query: 233 --FLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLA 290
                P    L    G+  LH A    ++  +++LLK+  +   + E   +G TP+HV A
Sbjct: 371 DKKASPNAKAL---NGFTPLHIACKKNRIRVMELLLKHGASIQAVTE---SGLTPIHVAA 424

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q63618|ESPN_RAT Espin OS=Rattus norvegicus GN=Espn PE=1 SV=2

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 30/205 (14%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
           G T LHLAA+FGH ++V++L+ +    +     +T +     +H A   G++  +K+L  
Sbjct: 104 GATVLHLAARFGHPDVVNWLLYQGGANS----AITTDTGALPIHYAAAKGDLPSMKLLVG 159

Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH-EGPNGKTALHAAAMHFY- 196
             P+   ++   G T LY+A +  + E+   L++ C++  H    +G T LHAAA   + 
Sbjct: 160 HYPEGVNAQTNNGATPLYLACQEGHLEVTKYLVQECSADPHLRAQDGMTPLHAAAQMGHN 219

Query: 197 -------------FENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVD 243
                        FE D   A         TA+H AA +GH + +  +L    +  +  D
Sbjct: 220 PVLVWLVSFADVSFEQDHDGA---------TAMHFAASRGHTKVLSWLLLHGAEISQ--D 268

Query: 244 HRGWNFLHYAMVSFKLHELKILLKN 268
             G   LH A  + +L   +IL  N
Sbjct: 269 LWGGTPLHDAAENGELECCQILAVN 293

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.

Rattus norvegicus (taxid: 10116)

>sp|Q69ZU8|ANKR6_MOUSE Ankyrin repeat domain-containing protein 6 OS=Mus musculus GN=Ankrd6 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 118/264 (44%), Gaps = 52/264 (19%)

Query: 56  GSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNN 115
           G T+ + +++ K     + V   G TPLHLAA  GH ++V  L     L A   + + ++
Sbjct: 21  GQTENVVQLINK--GAKVAVTKHGRTPLHLAANKGHLSVVQIL-----LKAGCDLDVQDD 73

Query: 116 EKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCT 175
              TALH A   GN +++  L +                                 E C 
Sbjct: 74  GDQTALHRATVVGNTEILTALIR---------------------------------EGC- 99

Query: 176 SVSHEGPNGKTALHAAAMHFYFENDQ----TAADIADKDRKM-TALHLAAGQGHARTVET 230
           ++  +  +G TALH AA H + ++ +      A++  +++   TALHLA    H+++   
Sbjct: 100 ALDRQDKDGNTALHEAAWHGFSQSAKLLVKAGANVLARNKAGNTALHLACQNSHSQSTR- 158

Query: 231 ILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLA 290
           IL L     +L ++ G   LH A     L  +++LL    A   ++E +  G+T LHV A
Sbjct: 159 ILLLGGSRADLKNNAGDTCLHVAARYNHLSVVRLLLN---AFCSVHEKNQAGDTALHVAA 215

Query: 291 AIRPKEFFKIKVRYDAGGNYGAVN 314
           A+  K+   +KV  +AG +   VN
Sbjct: 216 ALNHKKV--VKVLLEAGADTTIVN 237

Recruits CKI-epsilon to the beta-catenin degradation complex that consists of AXN1 or AXN2 and GSK3-beta and allows efficient phosphorylation of beta-catenin, thereby inhibiting beta-catenin/Tcf signals.

Mus musculus (taxid: 10090)

>sp|O44997|DAPK_CAEEL Death-associated protein kinase dapk-1 OS=Caenorhabditis elegans GN=dapk-1 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 13/164 (7%)

Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
           NA GDT LHLAA   +  IV  L+  A       + + N  + T LH A   G+V  V+ 
Sbjct: 489 NASGDTVLHLAADSINPRIVPLLVCLAP-----PLHLRNIREETPLHVAAARGHVDCVQA 543

Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHF 195
           L   +      E   GKT+L +A E    ++   L+ N   ++H   +G TALH A+ H 
Sbjct: 544 LLDANSPIDAVEQD-GKTALIIALENGNVDIASILITNGCDINHADHHGDTALHIASKHG 602

Query: 196 YFENDQT------AADIADKDRKMTALHLAAGQGHARTVETILF 233
             +  QT        D  + ++K TALHLAA  GH   +  +L 
Sbjct: 603 LLQAVQTLCHCAVTVDSVNANKK-TALHLAAHYGHVDIIRVLLL 645

Negative regulator of barrier repair and innate immune responses to wounding. Appears to act downstream from or in parallel to muscarinic signaling in the regulation of autophagy.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
255585399	575	ankyrin repeat-containing protein, putat	0.923	0.584	0.374	2e-60
224127104	405	predicted protein [Populus trichocarpa]	0.859	0.772	0.384	1e-58
224127098	399	predicted protein [Populus trichocarpa]	0.859	0.784	0.384	2e-58
224145572	395	predicted protein [Populus trichocarpa]	0.854	0.787	0.393	3e-58
224127079	394	predicted protein [Populus trichocarpa]	0.857	0.791	0.384	2e-57
224127106	575	predicted protein [Populus trichocarpa]	0.920	0.582	0.360	1e-55
255551947	582	ankyrin repeat-containing protein, putat	0.774	0.484	0.387	5e-55
224107373	391	predicted protein [Populus trichocarpa]	0.777	0.723	0.347	2e-44
224126955	295	predicted protein [Populus trichocarpa]	0.703	0.867	0.404	3e-44
356510752	629	PREDICTED: ankyrin-2-like [Glycine max]	0.708	0.410	0.372	5e-44

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 152/406 (37%), Positives = 216/406 (53%), Gaps = 70/406 (17%)

Query: 9   NFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKC 68
           + + AA  G  + FK      +   LL    K+TILH+N+ S   +  ST F+ E L  C
Sbjct: 30  DLYKAAEDGKIDPFKNFAGPLD---LLVTPIKDTILHLNLASPSER--STSFVKEALDMC 84

Query: 69  PSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKL----------AAWQMMRMTNNEKN 118
           P +LLQ+NA GDT LH+AA++GH +IV  LIE  +           A  QM+RMTN  K 
Sbjct: 85  PQILLQINADGDTLLHIAARYGHLDIVKLLIEHTRAQHQDLESAGEAVRQMLRMTNKSKE 144

Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
           TALHEA  + +  +V++L +QDPD+ +S N +G+T LY+A+E  + E+V+ +L+ CTS++
Sbjct: 145 TALHEAARNDHPDLVELLIEQDPDFVHSSNDFGETPLYLASERGHLEVVVIMLKACTSLA 204

Query: 179 HEGPNGKTALHAAAMHFY-----------------------------------------F 197
           + GPNGKTALHAAAMH +                                          
Sbjct: 205 YGGPNGKTALHAAAMHRHGGIVHAILDKKTSLVNKADEMGWTPLHYAAYIGASRVVKQLL 264

Query: 198 ENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSF 257
             D+  A  ADK R+ TALHLAA Q + +++  I+F  P C +LVD+RGWN  HYA++S 
Sbjct: 265 GYDKYVAYAADKARRRTALHLAACQANIKSMREIIFKCPDCCKLVDNRGWNVAHYAVISK 324

Query: 258 KLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIR--PKEFFKIKVRYDAGGNYGAVNK 315
               LKILL NP    L+ E D  GNTPLH+LAA++  P+        + A G+  AV +
Sbjct: 325 SDDALKILLANPSCIYLVNEKDAQGNTPLHLLAALQSHPRSLM-----HHAKGHRFAVYR 379

Query: 316 QNVSVTDVLIYGSRELTLSNVNFQEEVRNLSKDNGRGQYPDGVICK 361
           QN           +EL   +   ++E++   +D G G     VI K
Sbjct: 380 QNFLCI-------KELLSRSPCRKKEIQEWMRDLGGGPLGQIVIKK 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 146/380 (38%), Positives = 206/380 (54%), Gaps = 67/380 (17%)

Query: 8   PNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKK 67
           P  F AAA GD + F++  T   ++ LLT   +NTILH+ + +Q R+   T F+  +L+ 
Sbjct: 15  PVLFKAAAEGDIDPFEKYQTC--LDQLLTPD-ENTILHVYLGNQSREPELTDFVVIILEM 71

Query: 68  CPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAK----------LAAWQMMRMTNNEK 117
           CP LL Q N KG+ PLHLAA +GHSN+V  LI+RAK            A +M+RMTN E+
Sbjct: 72  CPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSESGVTEAKKMLRMTNEEQ 131

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE--GRYSE----MVIELL 171
           +TALHEA  H    VV+ILTK+DP++PYS N +G+T LY+AA    R+ E    +V  +L
Sbjct: 132 DTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREERGKVVDGIL 191

Query: 172 ENCTSVSHEGPNGKTALHAA---------------------------------------- 191
            NC SV + GPNG+TAL+AA                                        
Sbjct: 192 GNCISVDYGGPNGRTALNAAIWVRDDETARKLLEKEKKLTQTTDENGWSPLHHAACYDWS 251

Query: 192 --AMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNF 249
              +    END +AA IA+ +++ TALH+AA QGH   ++ I+   P C ELVD+RGWN 
Sbjct: 252 PRIVQVLLENDASAAYIAETEKRRTALHIAAIQGHVNAMKEIVSRCPACCELVDNRGWNA 311

Query: 250 LHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGN 309
           LHYA+ S         LK P    L  + D+ GNTP H++AA+  ++    +V ++    
Sbjct: 312 LHYAVASKDRVAFVHCLKIPELARLGTKKDDKGNTPFHLIAALAHQQKQWQRVLFNDSYG 371

Query: 310 YG------AVNKQNVSVTDV 323
           Y        +NK+ +SV D+
Sbjct: 372 YSGREIRCGLNKRQLSVDDI 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 146/380 (38%), Positives = 206/380 (54%), Gaps = 67/380 (17%)

Query: 8   PNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKK 67
           P  F AAA GD + F++  T   ++ LLT   +NTILH+ + +Q R+   T F+  +L+ 
Sbjct: 9   PVLFKAAAEGDIDPFEKYQTC--LDQLLTPD-ENTILHVYLGNQSREPELTDFVVIILEM 65

Query: 68  CPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAK----------LAAWQMMRMTNNEK 117
           CP LL Q N KG+ PLHLAA +GHSN+V  LI+RAK            A +M+RMTN E+
Sbjct: 66  CPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSESGVTEAKKMLRMTNEEQ 125

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE--GRYSE----MVIELL 171
           +TALHEA  H    VV+ILTK+DP++PYS N +G+T LY+AA    R+ E    +V  +L
Sbjct: 126 DTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREEGGKVVDGIL 185

Query: 172 ENCTSVSHEGPNGKTALHAA---------------------------------------- 191
            NC SV + GPNG+TAL+AA                                        
Sbjct: 186 GNCISVDYGGPNGRTALNAAIWVRDDETARKLLEKEKKLTQTTDENGWSPLHHAACYDWS 245

Query: 192 --AMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNF 249
              +    END +AA IA+ +++ TALH+AA QGH   ++ I+   P C ELVD+RGWN 
Sbjct: 246 PRIVQVLLENDASAAYIAETEKRRTALHIAAIQGHVNAMKEIVSRCPACCELVDNRGWNA 305

Query: 250 LHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGN 309
           LHYA+ S         LK P    L  + D+ GNTP H++AA+  ++    +V ++    
Sbjct: 306 LHYAVASKDRVAFVHCLKIPELARLGTKKDDKGNTPFHLIAALAHQQKQWQRVLFNDSYG 365

Query: 310 YG------AVNKQNVSVTDV 323
           Y        +NK+ +SV D+
Sbjct: 366 YSGREIRCGLNKRQLSVDDI 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145572|ref|XP_002325691.1| predicted protein [Populus trichocarpa] gi|222862566|gb|EEF00073.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (590), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 152/386 (39%), Positives = 212/386 (54%), Gaps = 75/386 (19%)

Query: 8   PNFFNAAAAGDAETFK-RNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLK 66
           P  + AA AG+   FK R  TS  +  LLT + KNTILH+ + +Q++ + ST F+G+++ 
Sbjct: 3   PKLYKAAEAGNINPFKDRLPTS--LNELLTPK-KNTILHVYLENQRKGSKSTDFVGQIID 59

Query: 67  KCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAK----------LAAWQMMRMTNNE 116
            CP LLLQ N KG+ PLH AA++G SN+V  LI+RAK            A +M+RMTN E
Sbjct: 60  MCPPLLLQANKKGEIPLHFAARYGRSNVVRVLIDRAKARPTDLESGVTEAKKMLRMTNEE 119

Query: 117 KNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYS-----------E 165
           K+TALH A  +   QVV+ILTK+DP++ YS N +G+T LY+AA  R++           +
Sbjct: 120 KDTALHVAARNIQAQVVEILTKEDPEFSYSTNVHGETPLYIAANLRFNWRFKRHEENRKK 179

Query: 166 MVIELLENCTSVSHEGPNGKTALHAAAMH------------------------------- 194
           ++ E+L NC SV + G +G+TALHAA M+                               
Sbjct: 180 VINEILSNCKSVEYCGSHGRTALHAAGMYGDHETTRKILERDASLTRRTDDDGWSPLHYA 239

Query: 195 -FY-------------FENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYE 240
            F+              E+D +AA I D +++ TALHLAA +G       I+   P   E
Sbjct: 240 VFFRDFVHSVSTVEVLLEHDVSAAYIVDSEKR-TALHLAASRGTWAAAIAIMNTCPASCE 298

Query: 241 LVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIR--PKEFF 298
           LVD RGWN LHYA ++ K H ++     P    LIYE DN+GNTPLH+ AA    P+ F 
Sbjct: 299 LVDSRGWNALHYAAITRKGH-IRFSRWIPKFDKLIYEKDNDGNTPLHLFAAFGNFPQMFL 357

Query: 299 KIKVRYDAGGNYGAVNKQNVSVTDVL 324
           +   R+ A      +NKQN+SV D+L
Sbjct: 358 RSDWRH-AYKKMCGLNKQNLSVDDIL 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa]

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 147/382 (38%), Positives = 205/382 (53%), Gaps = 70/382 (18%)

Query: 8   PNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKK 67
           P  F AA AG+   F+   TS  +  LLTA  +NTILH+ + +Q  +  ST F+ + L++
Sbjct: 3   PVLFKAAEAGNIGPFENYQTS--LNQLLTAD-ENTILHVYLKNQSSEPESTDFVDKFLER 59

Query: 68  CPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAK----------LAAWQMMRMTNNEK 117
           CP LL Q N +G+TPLHLAA+ GHSN+V  LI+RAK            A  M+RMTN E+
Sbjct: 60  CPPLLFQANKRGETPLHLAARNGHSNVVKVLIDRAKALPADPESGVTKAKMMLRMTNEEQ 119

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAA-------EGRYSEMVIEL 170
           +TALHEA  +    VV+ILTK+DP++ Y  N +G+T LY+AA          + ++V  +
Sbjct: 120 DTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAASIGFLMFSEEHGKVVDGI 179

Query: 171 LENCTSVSHEGPNGKTALHAAAM-----------------------------HF------ 195
           L NC SV + GP+G+TALHAA+M                             H+      
Sbjct: 180 LGNCISVDYGGPDGRTALHAASMAANYETARKMLEKEKKLTKTTDENGWSPLHYASYCDW 239

Query: 196 --------YFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGW 247
                     E D +AA IA+ ++K TALH+AA QGH   ++ I+   P C +LVD+RGW
Sbjct: 240 SNAPIVEVLLEYDASAASIAETEKKRTALHIAAIQGHVDAMKEIVSRCPACCDLVDNRGW 299

Query: 248 NFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKE------FFKIK 301
           N LHYA+ S      K  LK P    L  E D+ GNTP H++AA+  ++       F   
Sbjct: 300 NALHYAVASKDTKVFKECLKIPELARLQTEKDDKGNTPFHLIAALAHEQPEWRYVLFNDS 359

Query: 302 VRYDAGGNYGAVNKQNVSVTDV 323
             Y     YG +NK+ +SV D+
Sbjct: 360 NGYRKWQIYG-LNKRKLSVNDI 380

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 148/411 (36%), Positives = 211/411 (51%), Gaps = 76/411 (18%)

Query: 8   PNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKK 67
           P  F AA AG+   F+ N  +  +  LLT   +NTILH+ + +Q  +  ST F+ + L++
Sbjct: 3   PVLFKAAEAGNIGPFE-NYQTCSLNQLLTPD-ENTILHVYLKNQSSEPESTDFVDKFLER 60

Query: 68  CPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAK----------LAAWQMMRMTNNEK 117
           CP LL Q N +G+TPLHL A++GHSN+V  LI+RAK            A  M+RMTN E+
Sbjct: 61  CPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAKALPADPESGVTKAKMMLRMTNEEQ 120

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAA-------EGRYSEMVIEL 170
           +TALHEA  +    VV+ILTK+DP++ Y  N +G+T LY+A           + ++V  +
Sbjct: 121 DTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAVSIGFLMFSEEHGKVVDGI 180

Query: 171 LENCTSVSHEGPNGKTALHAAAM-----------------------------HF------ 195
           L NC SV + GP+G+TALHAA+M                             H+      
Sbjct: 181 LGNCISVDYGGPDGRTALHAASMAANYETARKMLEKEKKLTKTTDENGWSPLHYASYCDW 240

Query: 196 --------YFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGW 247
                     E D + A IA+ ++K TALH+AA QGH   ++ I+   P C +LVD+RGW
Sbjct: 241 SNAPIVEVLLEYDASTASIAETEKKRTALHIAAIQGHVDAMKEIVSRCPACCDLVDNRGW 300

Query: 248 NFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKE------FFKIK 301
           N LHYA+ S      K  LK P    L  E D+ GNTP H++AA+  ++       F   
Sbjct: 301 NALHYAVASKDTKVFKECLKIPELARLQTEKDDKGNTPFHLIAALAHEQPEWRYVLFNDS 360

Query: 302 VRYDAGGNYGAVNKQNVSVTDVLIYGSRELTLSNVNFQEEVRNLSKDNGRG 352
             Y     YG +NK+ +SV D+      E+       Q+E+     D G G
Sbjct: 361 NGYRKWQIYG-LNKRKLSVNDIYEEDFGEI-------QKEILESLNDGGSG 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551947|ref|XP_002517018.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543653|gb|EEF45181.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/343 (38%), Positives = 186/343 (54%), Gaps = 61/343 (17%)

Query: 40  KNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLI 99
           KNTILHI++ S  ++  S  F+ E L+ CPSLL + N+ GD PLH+AA++GH +IV  L+
Sbjct: 82  KNTILHIHLNSPNKR--SVDFVKEALQLCPSLLWKNNSNGDAPLHIAARYGHIDIVKLLL 139

Query: 100 ERAKL----------AAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENK 149
           E+AK           A  QM +M N +K+ ALHEA  + ++ VV++LT+ DP + Y  N 
Sbjct: 140 EQAKAQNEDLETGRGAMKQMWQMQNEKKDMALHEAARNNHLSVVRLLTRLDPHFLYPAND 199

Query: 150 YGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA----------------- 192
           Y +T LY+AA   Y  +VIE+L  C SV++ GP GKTALH A                  
Sbjct: 200 YEETPLYLAAARGYLYVVIEILNTCKSVAYGGPKGKTALHGAVLSGNRGIVLEILKREKR 259

Query: 193 ------------MHF-----------------YFENDQTAADIADKDRKMTALHLAAGQG 223
                       +H+                   E D++AA + DKDRK TALHLAA +G
Sbjct: 260 LTIEAEENGWTPLHYAAYGNDQNFGAYVIVQRLLECDKSAAYVVDKDRKRTALHLAACRG 319

Query: 224 HARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGN 283
           + R ++ I+   P C E+ D RGWN LHYA+VS     L+++L+N     L+ + D  GN
Sbjct: 320 NVRIMKEIISKCPDCCEIADDRGWNVLHYAVVSKNDEALQVILRNSSLIDLVNDRDAQGN 379

Query: 284 TPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIY 326
           TPLH+LA  RP   +     +D   +  A  KQNV   D LI+
Sbjct: 380 TPLHLLAVSRP---YLPSFVFDGEDDLNAFYKQNVLSRDDLIH 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107373|ref|XP_002333525.1| predicted protein [Populus trichocarpa] gi|222837132|gb|EEE75511.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 186/374 (49%), Gaps = 91/374 (24%)

Query: 8   PNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKK 67
           P  F  A AG+   F+   T   ++ LLT   +NTILH                      
Sbjct: 3   PVLFKVAEAGNIGPFENCQTC--LDQLLTPD-ENTILH---------------------- 37

Query: 68  CPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAK----------LAAWQMMRMTNNEK 117
                   N KG+ PLHLAA++GHSN+V  LI+ AK            A +M+RMTN E+
Sbjct: 38  -------ANKKGEIPLHLAARYGHSNVVKVLIDCAKALPTDPESGVTEAKKMLRMTNEEQ 90

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGR----YSEMVIELLEN 173
           +TALHEA  +    VV+ILTK+DP++ YS N  G+T LY+AA  R      +++ E+L N
Sbjct: 91  DTALHEAARNSRGHVVEILTKEDPEFSYSANVLGETPLYIAAASRKCLERKKVIDEILTN 150

Query: 174 CTSVSH-EGPNGKTALHAAA-----------------------------MHF-------- 195
           C SV +  GPNG+TALHAA                              +H+        
Sbjct: 151 CISVDYGAGPNGRTALHAAVRVRDLETARKLLEKEKKLTQTTDENGWSPLHYAACYDWSP 210

Query: 196 -----YFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFL 250
                  END +AA IA+ +++ TALH+AA QGH   ++ I+   P C ELVD+RGWN L
Sbjct: 211 RIVQVLLENDASAAYIAETEKRRTALHIAAIQGHVEIMKEIVSRCPACCELVDNRGWNAL 270

Query: 251 HYAMVSFKLHEL-KILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGN 309
           HYA+       + K  L+ PL   L  + D+ GNTP H++AA+  ++    +V ++    
Sbjct: 271 HYAVARKDSSRVFKECLRIPLLARLKTKKDDKGNTPFHLIAALAREQRKWARVLFNE-RK 329

Query: 310 YGAVNKQNVSVTDV 323
              +NK+ +S  D+
Sbjct: 330 ICILNKRKLSAKDI 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126955|ref|XP_002329347.1| predicted protein [Populus trichocarpa] gi|222870397|gb|EEF07528.1| predicted protein [Populus trichocarpa]

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/292 (40%), Positives = 166/292 (56%), Gaps = 36/292 (12%)

Query: 68  CPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAW----------QMMRMTNNEK 117
           CP LLLQ N KG+TPLH AA++GHSN V  LI+RAK  A           +M+RMTN EK
Sbjct: 2   CPQLLLQANTKGETPLHFAARYGHSNAVKVLIDRAKTLAIDPENGPAEEKKMLRMTNEEK 61

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYS----------EMV 167
           +TALH A  +   +VVKILT++DP + YS N +G+T LY+AA  R +          E  
Sbjct: 62  DTALHVAARNIQAKVVKILTEEDPYFSYSANVHGETPLYIAANMRTALHAAAMHGDRETA 121

Query: 168 IELLENCTSVSHE-GPNGKTALHAAA----------MHFYFENDQTAADIADKDRKMTAL 216
            ++L+   S++     +G + LH AA          +    ++D +AA I D +++ TAL
Sbjct: 122 RKILKREESLTRRTDDDGWSPLHYAAFSPLLNGFLTVRVLLKHDASAAYIVDSEKR-TAL 180

Query: 217 HLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFK-LHELKILLKNPLARSLI 275
           H+A  +G+   +  I+ + P   ELVD RGWN LHYA  + + L  +      P    LI
Sbjct: 181 HMAVVRGNLLAMRVIMIMCPASCELVDTRGWNALHYAATTIEGLVAIYFSRWIPKFDKLI 240

Query: 276 YEGDNNGNTPLHVLAAIR--PKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLI 325
           YE DN+GNTPLH+ AA R  P+ +     R+ A  N   +NKQN+SV D+L+
Sbjct: 241 YEKDNDGNTPLHLFAAFRNFPQRYLSSDWRH-AYRNMCGLNKQNLSVDDILV 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510752|ref|XP_003524098.1| PREDICTED: ankyrin-2-like [Glycine max]

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 174/317 (54%), Gaps = 59/317 (18%)

Query: 31  IESLLTAQTKNTILHINIISQKRKNGST-----KFIGEMLKKCPSLLLQVNAKGDTPLHL 85
           +E+LLT   KNTILHI++ S   K+G T     +F+ ++L KC  L+L  NAKG+T LH+
Sbjct: 64  LENLLTPN-KNTILHIHLTSTTSKSGKTTPASAQFVTQILVKCGRLVLLPNAKGETLLHV 122

Query: 86  AAKFGHSNIVSFLIERAKL-----------AAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
           AA++GHSNI   L+E AK            A  + +R TN+E +TALHEAV + +++VVK
Sbjct: 123 AARYGHSNIAKLLLEHAKAKISPDIENGVGADQKFIRATNDELDTALHEAVRYDHIEVVK 182

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
            L + DPDY Y  N   +T LY+A+E +  ++V E+L+   S S++GPN +TALHAA ++
Sbjct: 183 TLLEMDPDYSYYANNAKETPLYLASERQNLQVVREILKKVKSPSYDGPNNQTALHAAVIN 242

Query: 195 ---------FYFENDQTAADIADK---------------------------------DRK 212
                       E+ + A  +ADK                                 +  
Sbjct: 243 QDIAMARDLLKNEHVRVAVKLADKKGWVPLHYAVKTRNAVLTKLLLKEDENTAYMQDNEG 302

Query: 213 MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLAR 272
            TALH+AA     R V+ I+   P C E+VD++GWN LHYA+   K + ++ +++N    
Sbjct: 303 RTALHIAADSDSRRIVKMIIKYYPDCSEIVDNKGWNALHYAVNGGKQNTIRRIMRNLYLS 362

Query: 273 SLIYEGDNNGNTPLHVL 289
           +L  E D +GNTPLH L
Sbjct: 363 NLYNEKDVDGNTPLHYL 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	364
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.782	0.430	0.300	3.4e-15
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.818	0.483	0.265	3.8e-15
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.695	0.482	0.292	1.8e-14
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.774	0.449	0.299	4.6e-13
UNIPROTKB|F1S0C5	541	ANKRD6 "Uncharacterized protei	0.598	0.402	0.289	1e-12
ZFIN|ZDB-GENE-070615-8	489	ankdd1a "ankyrin repeat and de	0.656	0.488	0.274	1.4e-12
ZFIN|ZDB-GENE-030728-7	1614	trpn1 "transient receptor pote	0.717	0.161	0.289	2.3e-12
ZFIN|ZDB-GENE-050522-247	1071	ankrd52a "ankyrin repeat domai	0.733	0.249	0.274	3.8e-12
UNIPROTKB|G3MWL8	731	ANKRD6 "Uncharacterized protei	0.598	0.298	0.285	6.3e-12
ZFIN|ZDB-GENE-071015-4	733	ankk1 "ankyrin repeat and kina	0.618	0.306	0.282	6.3e-12

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 92/306 (30%), Positives = 141/306 (46%)

Query:    60 FIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
             FIGE  KK  S       +GD+ LH+AA+ G+ + V  LI        +++   N E  T
Sbjct:   136 FIGERRKKNES----PGKRGDSSLHIAARTGNLSKVKELIRGCGDELKELLSKQNLEGET 191

Query:   120 ALHEAVCHGNVQVVKILTKQ-DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
              L+ A  +G+  VV+ + K  D +      + G    ++AA+  + E++  LLE   +++
Sbjct:   192 PLYTAAENGHSIVVEEMLKHMDLETASIAARNGFDPFHVAAKQGHLEVLKILLETFPNLA 251

Query:   179 HEGP-NGKTALHAAA-------MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVET 230
                  +  TALH AA       ++   E D   A IA  + K TALH AA  GH   V++
Sbjct:   252 MTTDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGK-TALHSAARMGHVEVVKS 310

Query:   231 ILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLA 290
             ++  DP      D +G   LH A V  +   + + L  P    L  E DN GNTPLH+  
Sbjct:   311 LIGKDPSIGFRTDKKGQTALHMA-VKGQNDGIVVELVKPDVAVLSVE-DNKGNTPLHIAT 368

Query:   291 AIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLI-YGSRELTLSNVNFQEEVRNLSKDN 349
                  +  +  V ++ G N   +NK   +  DV    G+ EL   +V  +E     +KD 
Sbjct:   369 NKGRIKIVRCLVSFE-GINLNPINKAGDTPLDVSEKIGNAELV--SV-LKEAGAATAKDL 424

Query:   350 GRGQYP 355
             G+ Q P
Sbjct:   425 GKPQNP 430

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 3.8e-15, P = 3.8e-15
 Identities = 88/332 (26%), Positives = 145/332 (43%)

Query:     8 PNFFNAAAAGDAETFKRNTTSD-EIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLK 66
             P    A  AGD  +  +    D ++   L     N+ILHI         G    +  ++ 
Sbjct:    39 PAILCAVRAGDKVSLLKRINDDVKVTQRLVDNQGNSILHIAAAL-----GHVHIVEFIIS 93

Query:    67 KCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLI----ERAKLAAWQMMRMTNNEKNTALH 122
               P+LL  VN  G+T LH+AA+ G  NIV  L+    E +   A+   +  N +  TALH
Sbjct:    94 TFPNLLQNVNLMGETTLHVAARAGSLNIVEILVRFITESSSYDAFIAAKSKNGD--TALH 151

Query:   123 EAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGP 182
              A+   +V+V   L     D  + +N    + LYMA E  Y E+V+++LE+ +S S    
Sbjct:   152 AALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHELVLKMLESSSSPSILAS 211

Query:   183 --NGKTALHAAA-------MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILF 233
               +GK+ +HAA        +      D    ++ +++ + T L   A  G    +  IL 
Sbjct:   212 MFSGKSVIHAAMKANRRDILGIVLRQDPGLIELRNEEGR-TCLSYGASMGCYEGIRYILA 270

Query:   234 LDPK-----CYELVDHRGWNFLHYAMVSFKLHELKILLKN-PLARSLIYEGDNNGNTPLH 287
                K     CY + D  G+  +H A     +  +K  LK+ P +R L+   +N      H
Sbjct:   271 EFDKAASSLCY-VADDDGFTPIHMAAKEGHVRIIKEFLKHCPDSRELL---NNQCQNIFH 326

Query:   288 VLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVS 319
             V A     +  K  ++ D G     +N+Q+++
Sbjct:   327 VAAIAGKSKVVKYLLKLDEGKRM--MNEQDIN 356

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 79/270 (29%), Positives = 126/270 (46%)

Query:    65 LKKCPSLLLQVNAK-GDTPLHLAAKFGHSNIVSFLI-ERAKLAAWQMMRMTNNEKNTALH 122
             +KK  ++  Q+ A+  DTPLH A + G ++++  +I E   +   +++   N    TAL+
Sbjct:     4 IKK--TMTKQMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALY 61

Query:   123 EAVCHGNVQVVKILTKQ-DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEG 181
              A  +G   +VKIL K  D     ++ K G  + ++AA+    +++  L+E    +S   
Sbjct:    62 VAAEYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTF 121

Query:   182 PNGKT-ALHAAAM--H-----FYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILF 233
              + KT ALH AA   H     F  +     A IA  + K TALH AA  GH   V+ ++ 
Sbjct:   122 DSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGK-TALHSAARNGHTVIVKKLIE 180

Query:   234 LDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIR 293
                     VD +G   LH A+       + +L++     SLI   DN GNTPLH+     
Sbjct:   181 KKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEAD--GSLINSADNKGNTPLHIAVRKN 238

Query:   294 PKEFFKIKVRYDAGGNYGAVNKQNVSVTDV 323
               E  +  ++Y       AVNK   +  D+
Sbjct:   239 RAEIVQTVLKYCEVSRV-AVNKSGETALDI 267

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.6e-13, P = 4.6e-13
 Identities = 92/307 (29%), Positives = 142/307 (46%)

Query:    62 GEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMT---NNEKN 118
             GE  KK  S       +GD+PLHLAA+ G+   V  LI RA     ++  ++   N E  
Sbjct:   100 GERKKKTDS----PGKRGDSPLHLAARTGNLGKVMELI-RACNGIEELKELSSKQNLEGE 154

Query:   119 TALHEAVCHGNVQVVKILTKQ-DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSV 177
             T L+ A  +G+  VV+ + K  D D    + + G    ++AA+  + E + +LLE   ++
Sbjct:   155 TPLYSAAENGHSLVVEEMLKHMDLDTASVKARNGFDPFHVAAKQGHIEALKKLLETFPNL 214

Query:   178 SHEGP-NGKTALHAAA-------MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVE 229
             +     +  TALH AA       ++   + D   A IA  + K TALH AA  GH   V+
Sbjct:   215 AMTVDLSCTTALHTAASQGHTDVVNLLLKTDSHLAKIAKNNGK-TALHSAARMGHREVVK 273

Query:   230 TILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVL 289
             +++  D       D +G   LH A V  +   + + L  P    L  E D+ GNTPLH  
Sbjct:   274 SLIGNDASIGFRTDKKGQTALHMA-VKGQNEGIVLELVKPDPAILSVE-DSKGNTPLHTA 331

Query:   290 AAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLI-YGSRELTLSNVNFQEEVRNLSKD 348
                   +  +  V +D G N  A+NK   +  D+    G+ EL   +V  +E     +KD
Sbjct:   332 TNKGRIKIVRCLVSFD-GINLNAMNKAGDTALDIAEKIGNPELV--SV-LKEAGAATAKD 387

Query:   349 NGRGQYP 355
              G+ + P
Sbjct:   388 LGKPRNP 394

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1S0C5 ANKRD6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 196 (74.1 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 69/238 (28%), Positives = 123/238 (51%)

Query:    83 LHLAAKFGHS-NIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDP 141
             L +AA  G + N+V  + + AK+A      +T + + TALH A   G++ VV+IL K   
Sbjct:    14 LLIAAYKGQAENVVQLINKGAKVA------VTKHGR-TALHLAANKGHLSVVQILLKAGC 66

Query:   142 DYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQ 201
             D    ++   +T+L+ A     +E++  L++   ++  +  +G TALH A+ H + ++ +
Sbjct:    67 DLDVQDDG-DQTALHRATVVGNTEVIAALIQEGCALDRQDKDGNTALHEASWHGFSQSAK 125

Query:   202 ----TAADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVS 256
                   A++  K++   TALHLA    HA++   +L L     +L ++ G   LH A   
Sbjct:   126 LLVKAGANVLAKNKAGNTALHLACQNSHAQSTR-VLLLGGSRADLKNNAGDTCLHVAARY 184

Query:   257 FKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVN 314
               L  +K+LL    A   ++E +  G+T LH+ AA+  K+   +K+  +AG +   VN
Sbjct:   185 NHLSIIKLLLS---AFCSVHEKNQAGDTALHIAAALNHKKV--VKILLEAGADGTIVN 237

GO:2000096 "positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-070615-8 ankdd1a "ankyrin repeat and death domain containing 1A" [Danio rerio (taxid:7955)]

 Score = 194 (73.4 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 72/262 (27%), Positives = 128/262 (48%)

Query:    76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
             N  G   LH AA+ GH  I+ +++E   L   Q+ ++ N+ K TA H A  HG+++VV+ 
Sbjct:   111 NKNGLNLLHCAAQRGHITILEYIME--DLENVQLNKVENSGK-TAFHLAAEHGHLEVVEF 167

Query:   136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHF 195
             L      +   + K+G T+L++AA+  +S+++ +++E   ++     +G TALH A+   
Sbjct:   168 LIGMGCAHNLKD-KHGNTALHLAAKQGHSDVLQKIMETGENIDERNIDGMTALHLASEGG 226

Query:   196 YFEND----QTAADIAD-KDRKMTALHLAAGQGHARTVETILFLDPKC-YELVDHRGWNF 249
             ++E      +   ++ +  D K TALHL A   HA   E  L +      + VD +  + 
Sbjct:   227 HYECIRLLLEAGCNVNELTDSKRTALHLVAQ--HASASEVRLLIQAGINLDSVDTQHVSA 284

Query:   250 LHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYD---A 306
             LH A+++     +K L++      +    DN   T LH+ A     E  ++ +      +
Sbjct:   285 LHLAVLNNSTEIVKDLIEAGCDLDIF---DNRLQTALHIAA-----EHGRLNIAETILIS 336

Query:   307 GGNYGAVNKQNVSVTDVLIYGS 328
             G N   ++KQ  S  DV   G+
Sbjct:   337 GVNLNLLDKQGKSSLDVAARGN 358

GO:0007165 "signal transduction" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-030728-7 trpn1 "transient receptor potential cation channel, subfamily N, member 1" [Danio rerio (taxid:7955)]

 Score = 199 (75.1 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 83/287 (28%), Positives = 130/287 (45%)

Query:    35 LTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQ--VNA---KGDTPLHLAAKF 89
             +T QT  T LH +      + G+T  + EML+  P+  +Q  +N     G +PL LAA  
Sbjct:   535 VTRQTGETPLHYSA-----RVGNTAVLQEMLRNVPTNQIQTAINKHSKNGWSPLLLAADQ 589

Query:    90 GHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSEN 148
             GH+ +V  L++  A++  +      + E   A+H A   G+  +V +L  Q   +  ++ 
Sbjct:   590 GHTEVVKILLQNNARVDVF------DEEGKAAIHLAAQRGHQDIVDVLLSQKA-FVNAKT 642

Query:   149 KYGKTSLYMAAEGRYSEMVIELLENC-TSVSHEGPNGKTALHAAAMHFYFENDQTA---- 203
             K G T L+++A+   + +V  L+EN   SV       +T LH AAM    +   +     
Sbjct:   643 KQGLTPLHLSAQNGSARLVRLLVENHQASVDALSLRKQTPLHLAAMSGQLDVCSSLLNLR 702

Query:   204 ADIADKD-RKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHEL 262
             ADI   D R  T LHLAA   H+  V+  L L P+   L +  G    H A     +  +
Sbjct:   703 ADITATDSRGQTPLHLAAESDHSEVVKLFLRLRPELSTLANEDGSTCTHIAAAKGSVSVI 762

Query:   263 KILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGN 309
             + LL              +G  PLH+ AA    E   +KV  +AG +
Sbjct:   763 RELLMFNQGGVGTLNHKAHGLCPLHLAAAGGHAEV--VKVLLEAGAS 807

GO:0070588 "calcium ion transmembrane transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

GO:0008381 "mechanically-gated ion channel activity" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0050910 "detection of mechanical stimulus involved in sensory perception of sound" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-050522-247 ankrd52a "ankyrin repeat domain 52a" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 3.8e-12, P = 3.8e-12
 Identities = 78/284 (27%), Positives = 128/284 (45%)

Query:    54 KNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMT 113
             + G ++ +  +L +  S LL  +     PLH+AA  GHS  +  L+         ++ +T
Sbjct:   621 QRGHSRCVELLLSQSASCLLAEHRSKWGPLHVAAANGHSECLRMLL--CSEGGADLVNVT 678

Query:   114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
             + E  T L  AV  G+   V +L ++    P  +++ G+T+L+  A     + +  LL +
Sbjct:   679 DAEGQTPLMLAVLGGHTDCVHLLLERGA-CPDMKDRRGRTALHRGAVMGREDCLTALLSH 737

Query:   174 CTSVSHEGPNGKTALHAAAM--HF-YFENDQTAADIADK-----DRK-MTALHLAAGQGH 224
               SV      G++ALH AA   H     N  +AAD +       DR   T  H AA  GH
Sbjct:   738 NVSVLSRDFQGRSALHLAASCGHADILSNLLSAADHSQPQDPLTDRHGYTPAHWAAYHGH 797

Query:   225 ARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNT 284
                +E +L L P C  + +   +  LH A+++      ++LL++ +  SL+   D  G T
Sbjct:   798 EDCLEVLLELKP-C-SIQEGNPFTPLHCALINGHSGSAELLLESSVCNSLVNIRDAKGRT 855

Query:   285 PLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLI-YG 327
             PLH  A        ++ +R   G +  AV+    S   V   YG
Sbjct:   856 PLHAAAVAEDVAGLQLVLRQ--GADIDAVDHSGRSALMVAADYG 897

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G3MWL8 ANKRD6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 191 (72.3 bits), Expect = 6.3e-12, P = 6.3e-12
 Identities = 68/238 (28%), Positives = 122/238 (51%)

Query:    83 LHLAAKFGHS-NIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDP 141
             L +AA  G + N+V  + + AK+A      +T + + T LH A   G++ VV+IL K   
Sbjct:    14 LLIAAYKGQTENVVQLINKGAKVA------VTKHGR-TPLHLAANKGHLSVVQILLKAGC 66

Query:   142 DYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQ 201
             D    ++   +T+L+ A     +E++  L++   ++  +  +G TALH A+ H + ++ +
Sbjct:    67 DLDVQDDG-DQTALHRATVVGNTEVIAALIQEGCALDRQDKDGNTALHEASWHGFSQSAK 125

Query:   202 ----TAADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVS 256
                   A++  K++   TALHLA    HA++   +L L     +L ++ G   LH A   
Sbjct:   126 LLVKAGANVLAKNKAGNTALHLACQNSHAQSTR-VLLLGGSRADLKNNAGDTCLHVAARY 184

Query:   257 FKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVN 314
               L  +K+LL    A   ++E +  G+T LH+ AA+  K+   +K+  +AG +   VN
Sbjct:   185 NHLSIIKLLLS---AFCSVHEKNQAGDTALHIAAALNHKKV--VKILLEAGADGTIVN 237

GO:2000096 "positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-071015-4 ankk1 "ankyrin repeat and kinase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 191 (72.3 bits), Expect = 6.3e-12, P = 6.3e-12
 Identities = 70/248 (28%), Positives = 114/248 (45%)

Query:    54 KNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMT 113
             +NG    +  +L++  S+ +Q +    T LH+A+ +GH NIV  L+ +       + +  
Sbjct:   456 QNGHENIVRILLRRLDSVDVQEHQSCRTALHVASIYGHINIVKLLLNKGA----DIDKQD 511

Query:   114 NNEKNTALHEAVCHGNVQVVKILTKQDPDY-PYSENKYGKTSLYMAAEGRYSEMVIELLE 172
             NN+ +TALH A   G+ +VV++L     D     E  Y  +SL+ AA   Y+ +   LL 
Sbjct:   512 NNQ-STALHLAAEEGHFRVVRLLVNSGADVNKVDEQSY--SSLHFAALNGYTGICRLLLS 568

Query:   173 NCTSVSHEGPNGKTALHAAAM--H----FYFENDQTAADIADKDRKMTALHLAAGQGHAR 226
                  +       TA+H AA+  H       E  Q + +I  K+   T LHLA   G   
Sbjct:   569 KGIDPNSRTNKNWTAMHLAALKGHPEIILTLEEHQGSVNIQGKNG-WTPLHLACHHGQEE 627

Query:   227 TVETILFL--DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNT 284
              V  +L    DP    L +  GW  LH A  S     +  L+ +   ++ +   +N+ +T
Sbjct:   628 VVTGLLTAGADPN---LAEDNGWTPLHLACNSSSFPSVLQLISH---KANVNAQNNSQST 681

Query:   285 PLHVLAAI 292
             PLH+ A +
Sbjct:   682 PLHLAAQL 689

GO:0004672 "protein kinase activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01200031 hypothetical protein (405 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	364
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.001
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.001
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.003
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 92.4 bits (230), Expect = 6e-23
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 6/125 (4%)

Query: 74  QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
             +  G TPLHLAA  GH  +V  L+E             +N+  T LH A  +G++++V
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVN-----AKDNDGRTPLHLAAKNGHLEIV 56

Query: 134 KILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM 193
           K+L ++  D   + +K G T L++AA     ++V  LL++   V+    +G+T LH AA 
Sbjct: 57  KLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAK 115

Query: 194 HFYFE 198
           + + E
Sbjct: 116 NGHLE 120

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 79.7 bits (197), Expect = 3e-18
 Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 8/127 (6%)

Query: 112 MTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELL 171
             + +  T LH A  +G+++VVK+L +   D   +++  G+T L++AA+  + E+V  LL
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 172 ENCTSVSHEGPNGKTALHAAAMHFYFE------NDQTAADIADKDRKMTALHLAAGQGHA 225
           E    V+    +G T LH AA +   +            +  DKD + T LHLAA  GH 
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGR-TPLHLAAKNGHL 119

Query: 226 RTVETIL 232
             V+ +L
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 63.8 bits (156), Expect = 5e-13
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 8/91 (8%)

Query: 83  LHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPD 142
           LHLAAK G+  +V  L+E+          +   + +TALH A  +GN+++VK+L +   D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA-------DVNLGDTDTALHLAARNGNLEIVKLLLEHGAD 53

Query: 143 YPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
              +++K G T+L++AA     E+V  LLE+
Sbjct: 54  -VNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 54  KNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRM 112
           KNG+ + +  +L+K   + L      DT LHLAA+ G+  IV  L+E  A       +  
Sbjct: 6   KNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGAD------VNA 56

Query: 113 TNNEKNTALHEAVCHGNVQVVKILTKQDPD 142
            + + NTALH A  +GN+++VK+L +   D
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 55.3 bits (134), Expect = 6e-10
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
           LH A  +GN+++VK+L ++  D    +     T+L++AA     E+V  LLE+   V+ +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 181 GPNGKTALHAAAMHFYFE 198
             +G TALH AA +   E
Sbjct: 58  DKDGNTALHLAARNGNLE 75

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 205 DIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKI 264
           +  D+D   T LHLAA  GH   V+ +L          D+ G   LH A  +  L  +K+
Sbjct: 1   NARDED-GRTPLHLAASNGHLEVVKLLLENGADVNA-KDNDGRTPLHLAAKNGHLEIVKL 58

Query: 265 LLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKI 300
           LL+     + +   D +GNTPLH+ A     +  K+
Sbjct: 59  LLEK---GADVNARDKDGNTPLHLAARNGNLDVVKL 91

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
           G T LH AA  G   +V +L+E+           T+ + NTALH A  +GN++V+K+L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDIN-----RTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 45/183 (24%), Positives = 70/183 (38%), Gaps = 23/183 (12%)

Query: 29  DEIESLLTAQTKNTILHINIISQKRKNGSTKFIG---------EMLKKCPSLLLQVNAKG 79
             ++ LL A      L ++  S K+ N   +             +       L   +  G
Sbjct: 14  CFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDG 73

Query: 80  DTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAV-----CHGNVQVV 133
             PLH AA  G   IV  L+   A +         + + +T LH A        GN++V 
Sbjct: 74  RLPLHSAASKGDDKIVKLLLASGADVN------AKDADGDTPLHLAALNGNPPEGNIEVA 127

Query: 134 KILTKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAA 191
           K+L +   D D     ++ G T L+ AA    +++V  LLE     +     G TAL  A
Sbjct: 128 KLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPA 187

Query: 192 AMH 194
           A +
Sbjct: 188 AKN 190

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 78  KGDTPLHLAAKFGHSNIVSFLIER 101
            G+TPLHLAA+ GH  +V  L+E 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 19/168 (11%)

Query: 35  LTAQTKNTILHINIISQKRKNGSTKFIGEMLKK----CPSLLLQ----VNAK---GDTPL 83
           +      TIL   I    +      F+   +KK       +L +    VN +   G  P+
Sbjct: 102 IEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPI 161

Query: 84  HLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDY 143
           H+A K    +I+  L+E+   A      + +N   + LH A  +G+   +K+L     ++
Sbjct: 162 HIAIKHNFFDIIKLLLEKGAYA-----NVKDNNGESPLHNAAEYGDYACIKLLIDHG-NH 215

Query: 144 PYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAA 191
             ++ K G T L+ A    ++   IELL N  S++ +  +G T LH A
Sbjct: 216 IMNKCKNGFTPLHNAI--IHNRSAIELLINNASINDQDIDGSTPLHHA 261

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 38/191 (19%), Positives = 65/191 (34%), Gaps = 20/191 (10%)

Query: 109 MMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVI 168
           +   ++ + N  L  A+         +L      +  + +  G+  L+ AA     ++V 
Sbjct: 31  LSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVK 90

Query: 169 ELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT---------AADIADKDRKM----TA 215
            LL +   V+ +  +G T LH AA++                  AD+   + +     T 
Sbjct: 91  LLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTP 150

Query: 216 LHLAAGQGHARTVETILFLDPKC-YELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSL 274
           LH AA  G A  VE  L L+        +  G   L  A      +    L+K  L + L
Sbjct: 151 LHWAALNGDADIVE--LLLEAGADPNSRNSYGVTALDPA----AKNGRIELVKLLLDKGL 204

Query: 275 IYEGDNNGNTP 285
                      
Sbjct: 205 HLSLLKFNLEG 215

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 64  MLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHE 123
           +L+  P  L   +  G+TPLHLAAK+G   +V +L++         + + +++  TAL  
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPG-----VDLNLRDSDGLTALDL 55

Query: 124 A 124
           A
Sbjct: 56  A 56

Length = 56

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 41  NTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLI 99
           NT LH+       +NG+   + ++L K  + +   +  G TPLHLAAK GH  +V  L+
Sbjct: 74  NTPLHLAA-----RNGNLDVV-KLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 19/141 (13%)

Query: 56  GSTKFIGEMLK--KCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMT 113
           G+   + E+LK    P +    ++KG TPLH+AA  G+ + V  L++ A       + + 
Sbjct: 536 GNAALLEELLKAKLDPDI---GDSKGRTPLHIAASKGYEDCVLVLLKHA-----CNVHIR 587

Query: 114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPY---SENKYGKTSLYMAAEGRYSEMVIEL 170
           +   NTAL  A+   + ++ +IL      Y +   S+       L  AA+      + EL
Sbjct: 588 DANGNTALWNAISAKHHKIFRIL------YHFASISDPHAAGDLLCTAAKRNDLTAMKEL 641

Query: 171 LENCTSVSHEGPNGKTALHAA 191
           L+   +V  E   G TAL  A
Sbjct: 642 LKQGLNVDSEDHQGATALQVA 662

Length = 823

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 78  KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
            G TPLHLA      +I+  LI R          + N +K + LH AV  G+++ +++L 
Sbjct: 101 DGMTPLHLATILKKLDIMKLLIARGADP-----DIPNTDKFSPLHLAVMMGDIKGIELLI 155

Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM 193
                    E+  G T L +A       +   LL++  ++ + G NG  A    A+
Sbjct: 156 DHKACLDI-EDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAI 210

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAA 191
           L +  P    + +  G T L++AA+    E+V  LL+    ++    +G TAL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELL 171
            TALH+A   G +++VK L ++  D   + ++ G T+L++AAE    E++  LL
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 8/116 (6%)

Query: 78  KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
           KG+T LH A +     +   L+  +  A   +   TN   N+ LH AV H N  +V IL 
Sbjct: 167 KGNTALHYATENKDQRLTELLL--SYGANVNIPDKTN---NSPLHHAVKHYNKPIVHILL 221

Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIE-LLENCTSVSHEGP-NGKTALHAA 191
            ++     + +K G T L+++        +++ LLE+   V+ +    G TALH++
Sbjct: 222 -ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS 276

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 32/164 (19%)

Query: 149 KYGKTSLYMAAEGRYSEMVIELL-ENCTSVSHEGPNGKTALHAAAMHFYFENDQTA---- 203
           + G T L++      +  VI+LL +    V+ +   G+T LH      Y           
Sbjct: 81  RCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV-----YLSGFNINPKVI 135

Query: 204 -------ADIADKDR-KMTALHLAAGQGHARTVETI-LFLDPKCYEL-VDHRGWNFLHYA 253
                  AD+   D   MT L +     +A  VE + L +D       VD R  + LH+ 
Sbjct: 136 RLLLRKGADVNALDLYGMTPLAVLLKSRNA-NVELLRLLIDAGADVYAVDDRFRSLLHHH 194

Query: 254 MVSFK-----LHELKILLKNPLARSLIYEGDNNGNTPLHVLAAI 292
           + SFK     + EL     +P A       D  GNTPLH +A  
Sbjct: 195 LQSFKPRARIVRELIRAGCDPAAT------DMLGNTPLHSMATG 232

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 72 LLQVNAKGDTPLHLAAKFGHSNIVSFLI 99
          + + +  G+T LH+AA+ G+  ++  L+
Sbjct: 27 INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 48/205 (23%), Positives = 71/205 (34%), Gaps = 32/205 (15%)

Query: 134 KILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM 193
            I+ + D +    +       LY+A E R  ++V  LL+N   ++    N  T LH  + 
Sbjct: 20  YIIMEDDLNDYSYKKPV--LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSN 77

Query: 194 HFYFEND---------QTAADIADKDRK-MTALHLAAGQ--GHARTVETILFLDPKCYEL 241
             Y   D         +  A++   D   +T L  A  +       VE  L  +     +
Sbjct: 78  IKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEY-LLDNGANVNI 136

Query: 242 VDHRGWNFLHYAMVSFKLHELKIL-----------LKNPLARSLIY-----EGDNNGNTP 285
            +  G N LH   +     +LKIL            KN +   L Y       D  G TP
Sbjct: 137 KNSDGENLLHLY-LESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTP 195

Query: 286 LHVLAAIRPKEFFKIKVRYDAGGNY 310
           LH        EF K  +   A  N 
Sbjct: 196 LHYAVYNNNPEFVKYLLDLGANPNL 220

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	364
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.91
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.75
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.73
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.68
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.58
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.54
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.49
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.46
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.43
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.4
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.39
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.35
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.34
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.34
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.31
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.29
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.29
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.95
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.76
PF13606	30	Ank_3: Ankyrin repeat	98.72
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.71
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.68
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.63
PF13606	30	Ank_3: Ankyrin repeat	98.61
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.61
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.56
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.51
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.5
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.47
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.46
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.4
KOG0522	560	consensus Ankyrin repeat protein [General function	98.32
KOG0522	560	consensus Ankyrin repeat protein [General function	98.29
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.29
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.23
KOG0511	516	consensus Ankyrin repeat protein [General function	98.16
KOG2384	223	consensus Major histocompatibility complex protein	98.08
KOG0511	516	consensus Ankyrin repeat protein [General function	97.95
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.94
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.9
KOG2384	223	consensus Major histocompatibility complex protein	97.82
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.61
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.47
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.81
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.53
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.51
KOG2505	591	consensus Ankyrin repeat protein [General function	96.19
KOG2505	591	consensus Ankyrin repeat protein [General function	96.17
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.07
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.55
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.62
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.49
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.95
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	89.76

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.2e-44  Score=342.62  Aligned_cols=306  Identities=20%  Similarity=0.162  Sum_probs=222.5

Q ss_pred             CChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHH----------------------------------
Q 046373            6 IYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQ----------------------------------   51 (364)
Q Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~----------------------------------   51 (364)
                      .+++||+|+..|+.|+|+.|++..+-.....+..|.||||+|  +.                                  
T Consensus        41 ~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  118 (682)
T PHA02876         41 PFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTI--CIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLD  118 (682)
T ss_pred             cchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccc--cCCCCccccccccccchhhcccccHHHHHHHHHHHH
Confidence            468999999999999999999987443457777899999977  52                                  


Q ss_pred             ------------------------------------HhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHH
Q 046373           52 ------------------------------------KRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIV   95 (364)
Q Consensus        52 ------------------------------------~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v   95 (364)
                                                          .++.+++++|++    .+++++..|..|.||||+|+..|+.++|
T Consensus       119 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~----~Gadvn~~d~~G~TpLh~Aa~~G~~~iv  194 (682)
T PHA02876        119 EACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLE----GGADVNAKDIYCITPIHYAAERGNAKMV  194 (682)
T ss_pred             HHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence                                                233334444444    4888999999999999999999999999


Q ss_pred             HHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCC-----------------------------CCCCC
Q 046373           96 SFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDP-----------------------------DYPYS  146 (364)
Q Consensus        96 ~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~-----------------------------~~~~~  146 (364)
                      ++|+++|++     ++..+..|.||||+|+..++.+++++|++.+.                             +++ .
T Consensus       195 ~~LL~~Gad-----~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn-~  268 (682)
T PHA02876        195 NLLLSYGAD-----VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVN-S  268 (682)
T ss_pred             HHHHHCCCC-----cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCC-C
Confidence            999999976     56677778888888888888777776665443                             222 3


Q ss_pred             CCcCCchHHHHHHhcCCH-HHHHHHHHcCCCCCCCCCCCCChHHHHHHhhh-hhcchhhh-----hhhccCCCchHHHHH
Q 046373          147 ENKYGKTSLYMAAEGRYS-EMVIELLENCTSVSHEGPNGKTALHAAAMHFY-FENDQTAA-----DIADKDRKMTALHLA  219 (364)
Q Consensus       147 ~~~~~~t~l~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~~~-----~~~~~~~~~t~L~~a  219 (364)
                      .+..|.||||+|+..++. +++++|++.|++++..+..|.||||+|+.... .+....+.     ....+..|.||||.|
T Consensus       269 ~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A  348 (682)
T PHA02876        269 IDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQA  348 (682)
T ss_pred             CCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHH
Confidence            455688888888888875 57888888888888888888888888887531 11111111     111224577777777


Q ss_pred             Hhc-CCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCccee
Q 046373          220 AGQ-GHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFF  298 (364)
Q Consensus       220 ~~~-~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~  298 (364)
                      +.. +..++++.|+++|++ ++.+|..|+||||+|+..++.++++.|++.   |++++..+..|.||||+|+..++. ..
T Consensus       349 ~~~~~~~~iv~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~---gad~~~~~~~g~T~Lh~A~~~~~~-~~  423 (682)
T PHA02876        349 STLDRNKDIVITLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLDY---GADIEALSQKIGTALHFALCGTNP-YM  423 (682)
T ss_pred             HHhCCcHHHHHHHHHcCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCccccCCCCCchHHHHHHcCCH-HH
Confidence            764 466777777777777 466777777777777777777777777776   777777777777777777766551 23


Q ss_pred             ehhhhcccCCcccccccCCCchhHHhhhcc
Q 046373          299 KIKVRYDAGGNYGAVNKQNVSVTDVLIYGS  328 (364)
Q Consensus       299 ~~~ll~~~~~~~~~~n~~g~t~l~~a~~~~  328 (364)
                      .+.+|++.|++++.+|..|+||||+|+..+
T Consensus       424 ~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        424 SVKTLIDRGANVNSKNKDLSTPLHYACKKN  453 (682)
T ss_pred             HHHHHHhCCCCCCcCCCCCChHHHHHHHhC
Confidence            345666777777777777777777776543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.5e-43  Score=321.01  Aligned_cols=291  Identities=18%  Similarity=0.160  Sum_probs=216.2

Q ss_pred             hhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHH
Q 046373            8 PNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAA   87 (364)
Q Consensus         8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~   87 (364)
                      ..|..|+..|+++.|+.|++.++......+..|.||||.|  +..|+.+++++|++.    +.+++..+..|.||||.|+
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A--~~~g~~~iv~~Ll~~----Ga~~n~~~~~~~t~L~~A~   76 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDA--IRSGDAKIVELFIKH----GADINHINTKIPHPLLTAI   76 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHH
Confidence            4688999999999999999876444445666899999999  999999999999986    8888999999999999999


Q ss_pred             HcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHH
Q 046373           88 KFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMV  167 (364)
Q Consensus        88 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v  167 (364)
                      ..|+.+++++|+++|++.     .        .  .+....+.+++++|++.|.+++ ..+..|.||||+|+..|+.+++
T Consensus        77 ~~~~~~iv~~Ll~~g~~~-----~--------~--~~~~~~~~~~i~~ll~~g~d~n-~~~~~g~T~Lh~A~~~~~~~~v  140 (434)
T PHA02874         77 KIGAHDIIKLLIDNGVDT-----S--------I--LPIPCIEKDMIKTILDCGIDVN-IKDAELKTFLHYAIKKGDLESI  140 (434)
T ss_pred             HcCCHHHHHHHHHCCCCC-----C--------c--chhccCCHHHHHHHHHCcCCCC-CCCCCCccHHHHHHHCCCHHHH
Confidence            999999999999988541     0        0  1122234555566666555544 4455556666666666666666


Q ss_pred             HHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhh-----hccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccc
Q 046373          168 IELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADI-----ADKDRKMTALHLAAGQGHARTVETILFLDPKCYELV  242 (364)
Q Consensus       168 ~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~-----~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~  242 (364)
                      ++|++.|++++.++..|.||||+|+.....+....+...     .....|.||||.|+..|+.+++++|++++++ ++..
T Consensus       141 ~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~-i~~~  219 (434)
T PHA02874        141 KMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH-IMNK  219 (434)
T ss_pred             HHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CcCC
Confidence            666666666666665666666666554222222222111     1224678889999999999999999999988 4778


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhH
Q 046373          243 DHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTD  322 (364)
Q Consensus       243 d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~  322 (364)
                      +..|.||||.|+..+. +.+.+|+.    +++++.+|..|.||||+|++.+. ....+.+|+.+|++++.+|..|+||++
T Consensus       220 ~~~g~TpL~~A~~~~~-~~i~~Ll~----~~~in~~d~~G~TpLh~A~~~~~-~~~iv~~Ll~~gad~n~~d~~g~TpL~  293 (434)
T PHA02874        220 CKNGFTPLHNAIIHNR-SAIELLIN----NASINDQDIDGSTPLHHAINPPC-DIDIIDILLYHKADISIKDNKGENPID  293 (434)
T ss_pred             CCCCCCHHHHHHHCCh-HHHHHHHc----CCCCCCcCCCCCCHHHHHHhcCC-cHHHHHHHHHCcCCCCCCCCCCCCHHH
Confidence            8889999999998765 55666664    77889999999999999998763 155677778899999999999999999


Q ss_pred             Hhhhc
Q 046373          323 VLIYG  327 (364)
Q Consensus       323 ~a~~~  327 (364)
                      +|+..
T Consensus       294 ~A~~~  298 (434)
T PHA02874        294 TAFKY  298 (434)
T ss_pred             HHHHh
Confidence            99644

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=5.1e-43  Score=316.33  Aligned_cols=301  Identities=13%  Similarity=0.031  Sum_probs=248.0

Q ss_pred             ChhHHHHH--hcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHH
Q 046373            7 YPNFFNAA--AAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLH   84 (364)
Q Consensus         7 ~~~l~~A~--~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~   84 (364)
                      ...||.++  ..++.++|++|++.| .+....+.+|.||||+|  ++.|+.+++++|+++    +++++..|..|.||||
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~G-advn~~d~~G~TpLh~A--a~~g~~eiv~lLL~~----GAdin~~d~~g~TpLh  110 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRG-YSPNETDDDGNYPLHIA--SKINNNRIVAMLLTH----GADPNACDKQHKTPLY  110 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCc-CCCCccCCCCCCHHHHH--HHcCCHHHHHHHHHC----cCCCCCCCCCCCCHHH
Confidence            45777765  455789999999998 77888888999999999  999999999999986    8899999999999999


Q ss_pred             HHHHcCC--HHHHHHHHHHhhHHHhHhhh-cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhc
Q 046373           85 LAAKFGH--SNIVSFLIERAKLAAWQMMR-MTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG  161 (364)
Q Consensus        85 ~A~~~~~--~~~v~~Ll~~~~~~~~~~~~-~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~  161 (364)
                      +|+..++  .+++++|+++|++     ++ ..+..|.|||| |+..++.+++++|++.|.++. ..+..|.||||+|+..
T Consensus       111 ~A~~~~~~~~e~v~lLl~~Gad-----in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~-~~d~~G~t~Lh~A~~~  183 (446)
T PHA02946        111 YLSGTDDEVIERINLLVQYGAK-----INNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR-IVDKFGKNHIHRHLMS  183 (446)
T ss_pred             HHHHcCCchHHHHHHHHHcCCC-----cccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc-ccCCCCCCHHHHHHHh
Confidence            9988764  7899999999976     44 35889999998 667799999999999999876 7888999999999875


Q ss_pred             CC--HHHHHHHHHcCCCCCCCCCCCCChHHHHHHhh--hhhcc----hhhhhhhccCCCchHHHHHHhcCC-HHHHHHHH
Q 046373          162 RY--SEMVIELLENCTSVSHEGPNGKTALHAAAMHF--YFEND----QTAADIADKDRKMTALHLAAGQGH-ARTVETIL  232 (364)
Q Consensus       162 ~~--~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~----~~~~~~~~~~~~~t~L~~a~~~~~-~~~~~~Ll  232 (364)
                      ++  .+++++|++.|++++..+..|.||||+|+...  ..+..    ........+..|.||||+|+..++ .+++++|+
T Consensus       184 ~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll  263 (446)
T PHA02946        184 DNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKTLSPAHLINKLL  263 (446)
T ss_pred             cCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCChHHHHHHHH
Confidence            54  78999999999999999999999999999752  11111    111122234689999999999988 48999999


Q ss_pred             hcCCcc-------------------cccc-cCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhc
Q 046373          233 FLDPKC-------------------YELV-DHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAI  292 (364)
Q Consensus       233 ~~~~~~-------------------~~~~-d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~  292 (364)
                      .++.+.                   ++.. +..|+||||+|+..|+.+++++|+++   +       ..|.||||+|+..
T Consensus       264 ~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~---~-------~~~~t~L~~A~~~  333 (446)
T PHA02946        264 STSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDN---D-------IICEDAMYYAVLS  333 (446)
T ss_pred             hCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHC---C-------CccccHHHHHHHh
Confidence            987642                   1111 23577999999999999999999997   3       3579999999999


Q ss_pred             CCcceeehhhhcccCCcccccccCCCchhHHhhhcccceeec
Q 046373          293 RPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSRELTLS  334 (364)
Q Consensus       293 ~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~~  334 (364)
                      ++  ...+.+|+.+|++++.+ ..|.||+|+|...+....++
T Consensus       334 ~~--~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~  372 (446)
T PHA02946        334 EY--ETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILS  372 (446)
T ss_pred             CH--HHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHH
Confidence            99  66677777999999886 57999999997666665543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.2e-43  Score=334.02  Aligned_cols=306  Identities=17%  Similarity=0.140  Sum_probs=263.8

Q ss_pred             CChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHH
Q 046373            6 IYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHL   85 (364)
Q Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~   85 (364)
                      ..+.++.|+..|+.+++++|++.| .+....+..|.||||+|  ++.|+.+++++|++.    +++++..+..|.||||+
T Consensus       145 ~~~~l~~~i~~~~~~i~k~Ll~~G-advn~~d~~G~TpLh~A--a~~G~~~iv~~LL~~----Gad~n~~~~~g~t~L~~  217 (682)
T PHA02876        145 YMKLIKERIQQDELLIAEMLLEGG-ADVNAKDIYCITPIHYA--AERGNAKMVNLLLSY----GADVNIIALDDLSVLEC  217 (682)
T ss_pred             hhHHHHHHHHCCcHHHHHHHHhCC-CCCCCCCCCCCCHHHHH--HHCCCHHHHHHHHHC----CCCcCccCCCCCCHHHH
Confidence            345788999999999999999998 77778888999999999  999999999999996    88889999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhhHH------------------------HhHhhhcCCCCCCcHHHHHHHcCCH-HHHHHHHhcC
Q 046373           86 AAKFGHSNIVSFLIERAKLA------------------------AWQMMRMTNNEKNTALHEAVCHGNV-QVVKILTKQD  140 (364)
Q Consensus        86 A~~~~~~~~v~~Ll~~~~~~------------------------~~~~~~~~~~~g~t~l~~a~~~~~~-e~v~~Ll~~~  140 (364)
                      |+..++.+++++|++.+...                        .+..++..+..|.||||+|+..++. +++++|++.|
T Consensus       218 A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~g  297 (682)
T PHA02876        218 AVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG  297 (682)
T ss_pred             HHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCC
Confidence            99999999999988765431                        0112455677899999999999986 6999999999


Q ss_pred             CCCCCCCCcCCchHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCCChHHHHHHh--------hhhhcchhhhhhhccCC
Q 046373          141 PDYPYSENKYGKTSLYMAAEGR-YSEMVIELLENCTSVSHEGPNGKTALHAAAMH--------FYFENDQTAADIADKDR  211 (364)
Q Consensus       141 ~~~~~~~~~~~~t~l~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~--------~~~~~~~~~~~~~~~~~  211 (364)
                      ++++ ..+..|.||||+|+..| ..++++.|+..|++++..+..|.||||+|+..        .+++.+...  ...+..
T Consensus       298 adin-~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi--n~~d~~  374 (682)
T PHA02876        298 ADVN-AKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANV--NARDYC  374 (682)
T ss_pred             CCCC-CcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC--ccCCCC
Confidence            9876 67888999999999999 59999999999999999999999999999874        222222211  123457


Q ss_pred             CchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCC-HHHHHHHHhCcccccccccCCCCCCcHHHHHH
Q 046373          212 KMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFK-LHELKILLKNPLARSLIYEGDNNGNTPLHVLA  290 (364)
Q Consensus       212 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~-~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~  290 (364)
                      |.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..++ ..+++.|++.   |+++|.+|..|+||||+|+
T Consensus       375 G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~---gadin~~d~~G~TpLh~Aa  450 (682)
T PHA02876        375 DKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFALCGTNPYMSVKTLIDR---GANVNSKNKDLSTPLHYAC  450 (682)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHcCCHHHHHHHHHhC---CCCCCcCCCCCChHHHHHH
Confidence            99999999999999999999999999 57789999999999998766 4568889988   9999999999999999999


Q ss_pred             hcCCcceeehhhhcccCCcccccccCCCchhHHhhh
Q 046373          291 AIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIY  326 (364)
Q Consensus       291 ~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~  326 (364)
                      ..+. ....+.+|++.|++++.+|..|.||+++|+.
T Consensus       451 ~~~~-~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~  485 (682)
T PHA02876        451 KKNC-KLDVIEMLLDNGADVNAINIQNQYPLLIALE  485 (682)
T ss_pred             HhCC-cHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            9773 1566778889999999999999999999964

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.3e-41  Score=312.53  Aligned_cols=282  Identities=19%  Similarity=0.173  Sum_probs=219.9

Q ss_pred             HHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHh---cCCChHHHHHHHhcCCccccccCCCCCcHHHHHH
Q 046373           11 FNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKR---KNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAA   87 (364)
Q Consensus        11 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~   87 (364)
                      +.++..+++++|++|++.| .+....+..|.||||+|  +..+   +.+++++|++.    +++++..+..|.||||+|+
T Consensus        19 ~~~~~~~~~~~v~~Ll~~g-a~vn~~~~~g~t~Lh~a--~~~~~~~~~~iv~~Ll~~----Gadin~~~~~g~TpLh~A~   91 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAG-ADVNFRGEYGKTPLHLY--LHYSSEKVKDIVRLLLEA----GADVNAPERCGFTPLHLYL   91 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcC-CCcccCCCCCCCHHHHH--HHhcCCChHHHHHHHHHC----CCCCCCCCCCCCCHHHHHH
Confidence            5678999999999999998 77778888999999999  9988   88888888886    8999999999999999999


Q ss_pred             HcC-CHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHH--HcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcC--
Q 046373           88 KFG-HSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAV--CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGR--  162 (364)
Q Consensus        88 ~~~-~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~--~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~--  162 (364)
                      ..| +.+++++|+++|++     ++..+..|.||||+|+  ..++.+++++|++.|++++ ..+..|.||||+|+..+  
T Consensus        92 ~~~~~~~iv~lLl~~ga~-----in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-~~d~~g~tpL~~a~~~~~~  165 (471)
T PHA03095         92 YNATTLDVIKLLIKAGAD-----VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLYGMTPLAVLLKSRNA  165 (471)
T ss_pred             HcCCcHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCC
Confidence            999 59999999999976     7888999999999999  5568999999999999976 77888999999998876  


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCChHHHHHHh---------hhhhcchhhhhhhccCCCchHHHHHHhcCCH--HHHHHH
Q 046373          163 YSEMVIELLENCTSVSHEGPNGKTALHAAAMH---------FYFENDQTAADIADKDRKMTALHLAAGQGHA--RTVETI  231 (364)
Q Consensus       163 ~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~---------~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~--~~~~~L  231 (364)
                      +.+++++|++.|++++..+..|.||||+++..         .+++.+.  .....+..|.||||.|+..|+.  .+++.|
T Consensus       166 ~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~--~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~l  243 (471)
T PHA03095        166 NVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGC--DPAATDMLGNTPLHSMATGSSCKRSLVLPL  243 (471)
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCC--CCcccCCCCCCHHHHHHhcCCchHHHHHHH
Confidence            58999999999999988888888888887753         1111111  1112234566777777766653  456666


Q ss_pred             HhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCccc
Q 046373          232 LFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYG  311 (364)
Q Consensus       232 l~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~  311 (364)
                      ++.|.+ ++..|..|+||||+|+..|+.+++++|++.   |++++.+|..|.||||+|+..++  ...+.++++.+++++
T Consensus       244 l~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~---gad~n~~~~~g~tpl~~A~~~~~--~~~v~~LL~~~~~~~  317 (471)
T PHA03095        244 LIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIAL---GADINAVSSDGNTPLSLMVRNNN--GRAVRAALAKNPSAE  317 (471)
T ss_pred             HHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCC--HHHHHHHHHhCCCHH
Confidence            666666 466666677777777777777777777766   66677777777777777777776  445555556666654


Q ss_pred             cc
Q 046373          312 AV  313 (364)
Q Consensus       312 ~~  313 (364)
                      ..
T Consensus       318 ~~  319 (471)
T PHA03095        318 TV  319 (471)
T ss_pred             HH
Confidence            33

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-41  Score=314.66  Aligned_cols=268  Identities=21%  Similarity=0.229  Sum_probs=213.9

Q ss_pred             CChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHH-----HHHHHHhcCCChHHHHHHHhcCCccccccCCCCC
Q 046373            6 IYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHI-----NIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGD   80 (364)
Q Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-----A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~   80 (364)
                      ..++||.|+..|+.++|++|++.| .+....+..+.||||+     |  +..++.+++++|++.    +++++..+..|.
T Consensus        35 ~~t~L~~A~~~~~~~ivk~Ll~~g-~~~~~~~~~~~t~L~~~~~~~a--~~~~~~~iv~~Ll~~----ga~i~~~d~~g~  107 (480)
T PHA03100         35 PVLPLYLAKEARNIDVVKILLDNG-ADINSSTKNNSTPLHYLSNIKY--NLTDVKEIVKLLLEY----GANVNAPDNNGI  107 (480)
T ss_pred             cchhhhhhhccCCHHHHHHHHHcC-CCCCCccccCcCHHHHHHHHHH--HhhchHHHHHHHHHC----CCCCCCCCCCCC
Confidence            346777777777777777777776 5555556567777777     7  777777777777765    666677777777


Q ss_pred             cHHHHHH--HcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCCCCCCcCCchHHH
Q 046373           81 TPLHLAA--KFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHG--NVQVVKILTKQDPDYPYSENKYGKTSLY  156 (364)
Q Consensus        81 t~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~--~~e~v~~Ll~~~~~~~~~~~~~~~t~l~  156 (364)
                      ||||+|+  ..|+.+++++|+++|++     ++..+..|.||||+|+..+  +.+++++|+++|++++ ..+..|.||||
T Consensus       108 tpL~~A~~~~~~~~~iv~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din-~~d~~g~tpL~  181 (480)
T PHA03100        108 TPLLYAISKKSNSYSIVEYLLDNGAN-----VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN-AKNRYGYTPLH  181 (480)
T ss_pred             chhhHHHhcccChHHHHHHHHHcCCC-----CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcc-cccCCCCCHHH
Confidence            7777777  77777777777777755     5666777777777777777  7777777777777755 45556777777


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCC--HHHHHHHHhc
Q 046373          157 MAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGH--ARTVETILFL  234 (364)
Q Consensus       157 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~--~~~~~~Ll~~  234 (364)
                      +|+..|+.+++++|+++|++++..+..|.++++.                      .||||.|+..|+  .+++++|+++
T Consensus       182 ~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~----------------------~t~l~~a~~~~~~~~~iv~~Ll~~  239 (480)
T PHA03100        182 IAVEKGNIDVIKFLLDNGADINAGDIETLLFTIF----------------------ETPLHIAACYNEITLEVVNYLLSY  239 (480)
T ss_pred             HHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHH----------------------HhHHHHHHHhCcCcHHHHHHHHHc
Confidence            7777777777777777777777777666666654                      799999999999  9999999999


Q ss_pred             CCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccc
Q 046373          235 DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVN  314 (364)
Q Consensus       235 ~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n  314 (364)
                      |++ ++.+|..|.||||+|+..++.+++++|++.   |++++.+|..|.||||+|++.++  ...+.+|+++|++++..+
T Consensus       240 g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~---gad~n~~d~~g~tpl~~A~~~~~--~~iv~~Ll~~g~~i~~i~  313 (480)
T PHA03100        240 GVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDL---GANPNLVNKYGDTPLHIAILNNN--KEIFKLLLNNGPSIKTII  313 (480)
T ss_pred             CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCcHHHHHHHhCC--HHHHHHHHhcCCCHHHHH
Confidence            998 588999999999999999999999999998   89999999999999999999999  677778888999876544

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=7.1e-42  Score=305.88  Aligned_cols=300  Identities=25%  Similarity=0.268  Sum_probs=255.2

Q ss_pred             CChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHH
Q 046373            6 IYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHL   85 (364)
Q Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~   85 (364)
                      .+.+||.|++.+..+.|+.|++.| .+....+..+.+|+|+|  +..+..++++.|+++    +.+++..|+.|.||||.
T Consensus        88 ~n~~l~~a~~~~~~~~i~~Lls~g-ad~~~~n~~~~aplh~A--~~~~~~s~L~~Ll~~----~~dvnl~de~~~TpLh~  160 (929)
T KOG0510|consen   88 DNTPLHAAVEYNQGDKIQVLLSYG-ADTPLRNLNKNAPLHLA--ADSGNYSCLKLLLDY----GADVNLEDENGFTPLHL  160 (929)
T ss_pred             cCchhHHHhhcchHHHHHHHHhcC-CCCChhhhhccCchhhc--cccchHHHHHHHHHh----cCCccccccCCCchhhH
Confidence            457899999999999999999998 77778888999999999  999999999999987    78999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHh-----cCCCCCCCCCcCCchHHHHHHh
Q 046373           86 AAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK-----QDPDYPYSENKYGKTSLYMAAE  160 (364)
Q Consensus        86 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~-----~~~~~~~~~~~~~~t~l~~A~~  160 (364)
                      ||..++.|..+.|++.+++     +...+..|.+|+|.|+++|..|+.+.++.     .+..++ ..+..+.||||.|+.
T Consensus       161 A~~~~~~E~~k~Li~~~a~-----~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in-~~~n~~~~pLhlAve  234 (929)
T KOG0510|consen  161 AARKNKVEAKKELINKGAD-----PCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHIN-FDNNEKATPLHLAVE  234 (929)
T ss_pred             HHhcChHHHHHHHHhcCCC-----CCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccc-cccCCCCcchhhhhh
Confidence            9999999988999999977     67778899999999999999999999988     344444 556678999999999


Q ss_pred             cCCHHHHHHHHHcCCC---------------CCCCCCCCCChHHHHHHhhhhhcchhhhhh-----hccCCCchHHHHHH
Q 046373          161 GRYSEMVIELLENCTS---------------VSHEGPNGKTALHAAAMHFYFENDQTAADI-----ADKDRKMTALHLAA  220 (364)
Q Consensus       161 ~~~~~~v~~Ll~~~~~---------------~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~-----~~~~~~~t~L~~a~  220 (364)
                      .|+.++++.++++|..               ++..|.+|.||||+|++.+..+....+...     ....++.||||.|+
T Consensus       235 ~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA  314 (929)
T KOG0510|consen  235 GGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAA  314 (929)
T ss_pred             cCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHH
Confidence            9999999999998743               355778899999999998555544333222     12257889999999


Q ss_pred             hcCCHHHHHHHHh-cCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccc---cCCCCCCcHHHHHHhcCCcc
Q 046373          221 GQGHARTVETILF-LDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIY---EGDNNGNTPLHVLAAIRPKE  296 (364)
Q Consensus       221 ~~~~~~~~~~Ll~-~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~---~~d~~g~t~L~~A~~~~~~~  296 (364)
                      ++|+.+.++.|++ .+....+..|..|.||||.|+.+|+..+++.|+++   |++..   ..|++|+||||.|+..|+  
T Consensus       315 ~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~---GA~~~~~~e~D~dg~TaLH~Aa~~g~--  389 (929)
T KOG0510|consen  315 IYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK---GALFLNMSEADSDGNTALHLAAKYGN--  389 (929)
T ss_pred             HcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhc---ChhhhcccccccCCchhhhHHHHhcc--
Confidence            9999999999998 44444677788899999999999999999999998   77665   568999999999999999  


Q ss_pred             eeehhhhcccCCcccccccCCCchhHH
Q 046373          297 FFKIKVRYDAGGNYGAVNKQNVSVTDV  323 (364)
Q Consensus       297 ~~~~~ll~~~~~~~~~~n~~g~t~l~~  323 (364)
                      ..++.+|+.+|++++.+|..|.|++++
T Consensus       390 ~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  390 TSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHHHHHHcCCceeeccccccccccc
Confidence            778888889999999999999999996

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.5e-40  Score=300.33  Aligned_cols=273  Identities=14%  Similarity=0.100  Sum_probs=228.7

Q ss_pred             CCCChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhc--CCChHHHHHHHhcCCccccc-cCCCCC
Q 046373            4 ISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRK--NGSTKFIGEMLKKCPSLLLQ-VNAKGD   80 (364)
Q Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~--~~~~~~l~~~l~~~~~~~~~-~~~~g~   80 (364)
                      ....+|||+|++.|+.++++.|++.| .+....+..|.||||+|  +..+.  .+++++|++.    +++++. .|..|.
T Consensus        70 ~~G~TpLh~Aa~~g~~eiv~lLL~~G-Adin~~d~~g~TpLh~A--~~~~~~~~e~v~lLl~~----Gadin~~~d~~g~  142 (446)
T PHA02946         70 DDGNYPLHIASKINNNRIVAMLLTHG-ADPNACDKQHKTPLYYL--SGTDDEVIERINLLVQY----GAKINNSVDEEGC  142 (446)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCCCCCCCCHHHHH--HHcCCchHHHHHHHHHc----CCCcccccCCCCC
Confidence            34678999999999999999999998 77778888999999999  77653  5778888875    777774 688999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCCCCCCcCCchHHHHH
Q 046373           81 TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHG--NVQVVKILTKQDPDYPYSENKYGKTSLYMA  158 (364)
Q Consensus        81 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~--~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A  158 (364)
                      |||| |+..++.+++++|++.+++     ++..|..|.||||+|+..+  +.+++++|++.|++++ ..|..|.||||+|
T Consensus       143 tpL~-aa~~~~~~vv~~Ll~~gad-----~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin-~~d~~G~TpLH~A  215 (446)
T PHA02946        143 GPLL-ACTDPSERVFKKIMSIGFE-----ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS-KPDHDGNTPLHIV  215 (446)
T ss_pred             cHHH-HHHCCChHHHHHHHhcccc-----ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHH
Confidence            9997 6677999999999999976     7888999999999998765  4799999999999976 7788999999999


Q ss_pred             HhcC--CHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhh--------hhhcchh----------------h---hhhhcc
Q 046373          159 AEGR--YSEMVIELLENCTSVSHEGPNGKTALHAAAMHF--------YFENDQT----------------A---ADIADK  209 (364)
Q Consensus       159 ~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~--------~~~~~~~----------------~---~~~~~~  209 (364)
                      +..+  +.+++++|++ |++++.++..|.||||+|+...        ++.....                .   ......
T Consensus       216 a~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~  294 (446)
T PHA02946        216 CSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGK  294 (446)
T ss_pred             HHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCc
Confidence            9986  7899999995 8999999999999999999761        2222110                0   001111


Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHH
Q 046373          210 DRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVL  289 (364)
Q Consensus       210 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A  289 (364)
                      ..+.||||+|+..|+.+++++|++++.        .|+||||+|+..++.++++.|+.+   ++++|.. ..|.||||+|
T Consensus       295 ~~~~TpLh~Aa~~g~~eivk~Ll~~~~--------~~~t~L~~A~~~~~~~~v~~Ll~~---ga~~n~~-~~G~t~l~~a  362 (446)
T PHA02946        295 QYDSTDFKMAVEVGSIRCVKYLLDNDI--------ICEDAMYYAVLSEYETMVDYLLFN---HFSVDSV-VNGHTCMSEC  362 (446)
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHCCC--------ccccHHHHHHHhCHHHHHHHHHHC---CCCCCCc-cccccHHHHH
Confidence            357799999999999999999999764        368999999999999999999998   8999985 5899999999


Q ss_pred             HhcCCcceeehhhh
Q 046373          290 AAIRPKEFFKIKVR  303 (364)
Q Consensus       290 ~~~~~~~~~~~~ll  303 (364)
                      ++.++.++...++.
T Consensus       363 ~~~~~~~~~~~ll~  376 (446)
T PHA02946        363 VRLNNPVILSKLML  376 (446)
T ss_pred             HHcCCHHHHHHHHh
Confidence            99999555554444

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.7e-40  Score=307.46  Aligned_cols=299  Identities=16%  Similarity=0.104  Sum_probs=219.4

Q ss_pred             HhcCChHHhhhccCChhHHHhhh-hccCCchHHHHHHHHH--hcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcC
Q 046373           14 AAAGDAETFKRNTTSDEIESLLT-AQTKNTILHINIISQK--RKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFG   90 (364)
Q Consensus        14 ~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~   90 (364)
                      ...++++++++|++.|.++.... +..|.||||+|  +..  ++.+++++|++.    +++++..|..|.||||+|+..|
T Consensus       150 ~~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A--~~n~~~~~eIVklLLe~----GADVN~kD~~G~TPLH~Aa~~g  223 (764)
T PHA02716        150 TRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAY--LGNMYVDIDILEWLCNN----GVNVNLQNNHLITPLHTYLITG  223 (764)
T ss_pred             ccCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHH--HHhccCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcC
Confidence            35689999999999874555555 67899999998  644  456889999886    8999999999999999999999


Q ss_pred             C--HHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHH---HcCCHHHHHHHHhcCCCCCCCCCcCCchHHH---HHHhcC
Q 046373           91 H--SNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAV---CHGNVQVVKILTKQDPDYPYSENKYGKTSLY---MAAEGR  162 (364)
Q Consensus        91 ~--~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~---~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~---~A~~~~  162 (364)
                      +  .++|++|+++|++     ++.++..|.||||+|+   ..++.|+++.|++.+.... .  ....++++   .|+..|
T Consensus       224 ~~~~eIVklLLe~GAD-----VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~-~--~~~~~~L~~~i~AA~~g  295 (764)
T PHA02716        224 NVCASVIKKIIELGGD-----MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNK-V--KNIPMILHSYITLARNI  295 (764)
T ss_pred             CCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc-c--ccchhhhHHHHHHHHcC
Confidence            5  4899999999987     7888999999999875   3467777777776532211 1  11112233   366777


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCChHHHHHHh---------hhhhcchhhhhhhccCCCchHHHHHHh------------
Q 046373          163 YSEMVIELLENCTSVSHEGPNGKTALHAAAMH---------FYFENDQTAADIADKDRKMTALHLAAG------------  221 (364)
Q Consensus       163 ~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~---------~~~~~~~~~~~~~~~~~~~t~L~~a~~------------  221 (364)
                      +.+++++|++.|++++.++..|.||||+|+..         .+++.+...  ...+..|.||||.|+.            
T Consensus       296 ~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI--N~kD~~G~TPLH~A~~~lav~~~ld~~~  373 (764)
T PHA02716        296 DISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL--NEPDNIGNTVLHTYLSMLSVVNILDPET  373 (764)
T ss_pred             CHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC--ccCCCCCCCHHHHHHHhhhhhccccccc
Confidence            77888888888887777777788888776532         223322211  1233467788877654            


Q ss_pred             --cCCHHHHHHHHhcCCcccccccCCCCcHHHHHH----HcCCHHHHHHHHhCcc-------------------------
Q 046373          222 --QGHARTVETILFLDPKCYELVDHRGWNFLHYAM----VSFKLHELKILLKNPL-------------------------  270 (364)
Q Consensus       222 --~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~----~~~~~~~~~~ll~~~~-------------------------  270 (364)
                        .++.+++++|+++|++ ++.+|..|+||||.++    ..+..+++++|++...                         
T Consensus       374 ~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh  452 (764)
T PHA02716        374 DNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHH  452 (764)
T ss_pred             cccChHHHHHHHHHCCCC-CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHH
Confidence              3677888888888887 5778888888888322    2355677777665310                         


Q ss_pred             ---------------------------------cccccccCCCCCCcHHHHHHhcCCccee---ehhhhcccCCcccccc
Q 046373          271 ---------------------------------ARSLIYEGDNNGNTPLHVLAAIRPKEFF---KIKVRYDAGGNYGAVN  314 (364)
Q Consensus       271 ---------------------------------~~~~i~~~d~~g~t~L~~A~~~~~~~~~---~~~ll~~~~~~~~~~n  314 (364)
                                                       .+.++|..|..|+||||+|+..|+.+..   .+.+|++.|++++.+|
T Consensus       453 ~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d  532 (764)
T PHA02716        453 IIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPT  532 (764)
T ss_pred             HHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccC
Confidence                                             0234566788999999999999984433   4588889999999999


Q ss_pred             cCCCchhHHhhhccc
Q 046373          315 KQNVSVTDVLIYGSR  329 (364)
Q Consensus       315 ~~g~t~l~~a~~~~~  329 (364)
                      .+|+||||+|..+++
T Consensus       533 ~~G~TPLh~A~~~g~  547 (764)
T PHA02716        533 KNGVTPLMLTMRNNR  547 (764)
T ss_pred             CCCCCHHHHHHHcCC
Confidence            999999999987665

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6e-40  Score=303.75  Aligned_cols=269  Identities=19%  Similarity=0.166  Sum_probs=240.4

Q ss_pred             hcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHH-----HHHc
Q 046373           15 AAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHL-----AAKF   89 (364)
Q Consensus        15 ~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~-----A~~~   89 (364)
                      .....++++++++.+.. ....+..+.||||.|  +..++.+++++|++.    +.+++..+..+.||||+     |+..
T Consensus        11 ~~~~~~~~~~~~~~~~~-~~~~~~~~~t~L~~A--~~~~~~~ivk~Ll~~----g~~~~~~~~~~~t~L~~~~~~~a~~~   83 (480)
T PHA03100         11 RIIKVKNIKYIIMEDDL-NDYSYKKPVLPLYLA--KEARNIDVVKILLDN----GADINSSTKNNSTPLHYLSNIKYNLT   83 (480)
T ss_pred             hHHHHHHHHHHHhcCcc-chhhhcccchhhhhh--hccCCHHHHHHHHHc----CCCCCCccccCcCHHHHHHHHHHHhh
Confidence            33455778888887633 345666999999999  999999999999986    88889999999999999     9999


Q ss_pred             CCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHH--HcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcC--CHH
Q 046373           90 GHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAV--CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGR--YSE  165 (364)
Q Consensus        90 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~--~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~--~~~  165 (364)
                      ++.+++++|++.|++     ++..+..|.||||+|+  ..|+.+++++|+++|+++. ..+..|.||||+|+..+  +.+
T Consensus        84 ~~~~iv~~Ll~~ga~-----i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~  157 (480)
T PHA03100         84 DVKEIVKLLLEYGAN-----VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN-IKNSDGENLLHLYLESNKIDLK  157 (480)
T ss_pred             chHHHHHHHHHCCCC-----CCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCChHH
Confidence            999999999999976     6788999999999999  9999999999999999976 67788999999999999  999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCC
Q 046373          166 MVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHR  245 (364)
Q Consensus       166 ~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~  245 (364)
                      ++++|+++|++++.++.                            .|.||||.|+..|+.+++++|+++|+++ +..+..
T Consensus       158 iv~~Ll~~g~din~~d~----------------------------~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~  208 (480)
T PHA03100        158 ILKLLIDKGVDINAKNR----------------------------YGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIE  208 (480)
T ss_pred             HHHHHHHCCCCcccccC----------------------------CCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCC
Confidence            99999999999875544                            5778888899999999999999999984 667777


Q ss_pred             C------CcHHHHHHHcCC--HHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCC
Q 046373          246 G------WNFLHYAMVSFK--LHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQN  317 (364)
Q Consensus       246 g------~t~l~~a~~~~~--~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g  317 (364)
                      |      .||+|+|+..++  .+++++|++.   |++++.+|..|.||||+|+..++  ...+.+|++.|++++.+|..|
T Consensus       209 ~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~---g~din~~d~~g~TpL~~A~~~~~--~~iv~~Ll~~gad~n~~d~~g  283 (480)
T PHA03100        209 TLLFTIFETPLHIAACYNEITLEVVNYLLSY---GVPINIKDVYGFTPLHYAVYNNN--PEFVKYLLDLGANPNLVNKYG  283 (480)
T ss_pred             CCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCCCccCCCC
Confidence            8      899999999999  9999999998   89999999999999999999999  667777889999999999999


Q ss_pred             CchhHHhhhcccc
Q 046373          318 VSVTDVLIYGSRE  330 (364)
Q Consensus       318 ~t~l~~a~~~~~~  330 (364)
                      .||+++|+..+..
T Consensus       284 ~tpl~~A~~~~~~  296 (480)
T PHA03100        284 DTPLHIAILNNNK  296 (480)
T ss_pred             CcHHHHHHHhCCH
Confidence            9999999765443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-39  Score=294.93  Aligned_cols=276  Identities=18%  Similarity=0.154  Sum_probs=208.5

Q ss_pred             CCChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHH-------------------H
Q 046373            5 SIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEM-------------------L   65 (364)
Q Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~-------------------l   65 (364)
                      ...+|||.|++.|+.++|++|++.| .+....+..|.||||.|  +..|+.+++++|++.                   +
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~Ll~~G-a~~n~~~~~~~t~L~~A--~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~l  110 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELFIKHG-ADINHINTKIPHPLLTA--IKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTI  110 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHH
Confidence            3468999999999999999999998 66667777899999999  999999999999874                   1


Q ss_pred             hcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 046373           66 KKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPY  145 (364)
Q Consensus        66 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~  145 (364)
                      ...+.+++..+..|.||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..|+.+++++|+++|++++ 
T Consensus       111 l~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad-----~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n-  184 (434)
T PHA02874        111 LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-----VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN-  184 (434)
T ss_pred             HHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC-----CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-
Confidence            123445666777777888888877777777777777765     56667777788888877777778888777777654 


Q ss_pred             CCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCH
Q 046373          146 SENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHA  225 (364)
Q Consensus       146 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~  225 (364)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+.                            .|.||||.|+..+. 
T Consensus       185 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~----------------------------~g~TpL~~A~~~~~-  235 (434)
T PHA02874        185 VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCK----------------------------NGFTPLHNAIIHNR-  235 (434)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCC----------------------------CCCCHHHHHHHCCh-
Confidence            5566777788888877777788888877777665554                            45566666665544 


Q ss_pred             HHHHHHHhcCCcccccccCCCCcHHHHHHHcC-CHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhc
Q 046373          226 RTVETILFLDPKCYELVDHRGWNFLHYAMVSF-KLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRY  304 (364)
Q Consensus       226 ~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~-~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~  304 (364)
                      +.+++|+ .+++ ++..|..|+||||+|+..+ +.+++++|+++   +++++.+|..|.||||+|+++++. ...+..++
T Consensus       236 ~~i~~Ll-~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~---gad~n~~d~~g~TpL~~A~~~~~~-~~~ik~ll  309 (434)
T PHA02874        236 SAIELLI-NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLYH---KADISIKDNKGENPIDTAFKYINK-DPVIKDII  309 (434)
T ss_pred             HHHHHHH-cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHC---cCCCCCCCCCCCCHHHHHHHhCCc-cHHHHHHH
Confidence            4556666 4666 5778899999999999875 78999999998   899999999999999999988742 33445566


Q ss_pred             ccCCcccccccCC-CchhHHh
Q 046373          305 DAGGNYGAVNKQN-VSVTDVL  324 (364)
Q Consensus       305 ~~~~~~~~~n~~g-~t~l~~a  324 (364)
                      ..++..+..+..+ .+++..+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~  330 (434)
T PHA02874        310 ANAVLIKEADKLKDSDFLEHI  330 (434)
T ss_pred             HhcCchhhccccchhHHHHHH
Confidence            7776654444444 4455555

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=6e-40  Score=293.60  Aligned_cols=304  Identities=20%  Similarity=0.195  Sum_probs=261.8

Q ss_pred             ChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHH
Q 046373            7 YPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLA   86 (364)
Q Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A   86 (364)
                      ..++|.|+..+.+      +++. ......|..+.+|||+|  ++.+..+.+++|++.    |++....+..+.+|+|+|
T Consensus        62 d~~~~~~~~~~y~------~~~~-~~~~a~D~~~n~~l~~a--~~~~~~~~i~~Lls~----gad~~~~n~~~~aplh~A  128 (929)
T KOG0510|consen   62 DTELHHASARNYI------LSKL-AISYAKDSADNTPLHAA--VEYNQGDKIQVLLSY----GADTPLRNLNKNAPLHLA  128 (929)
T ss_pred             hhHHHHHHhhcch------hhhh-hhhhhhhcccCchhHHH--hhcchHHHHHHHHhc----CCCCChhhhhccCchhhc
Confidence            3566777777755      3333 33446677999999999  999999999999997    899999999999999999


Q ss_pred             HHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHH
Q 046373           87 AKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEM  166 (364)
Q Consensus        87 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~  166 (364)
                      +..++.++++.|++.+.+     ++..|..|.||||.||..++.|..+.|++.+++.. ..+..|.+|+|.|+++|..++
T Consensus       129 ~~~~~~s~L~~Ll~~~~d-----vnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~-K~~~~~~~~iH~aa~s~s~e~  202 (929)
T KOG0510|consen  129 ADSGNYSCLKLLLDYGAD-----VNLEDENGFTPLHLAARKNKVEAKKELINKGADPC-KSDIDGNFPIHEAARSGSKEC  202 (929)
T ss_pred             cccchHHHHHHHHHhcCC-----ccccccCCCchhhHHHhcChHHHHHHHHhcCCCCC-cccCcCCchHHHHHHhcchhh
Confidence            999999999999999966     78899999999999999999998899999999955 888899999999999999999


Q ss_pred             HHHHHH-----cCCCCCCCCCCCCChHHHHHHhhhhhc-------chhhh-------------hhhccCCCchHHHHHHh
Q 046373          167 VIELLE-----NCTSVSHEGPNGKTALHAAAMHFYFEN-------DQTAA-------------DIADKDRKMTALHLAAG  221 (364)
Q Consensus       167 v~~Ll~-----~~~~~~~~~~~~~~~l~~a~~~~~~~~-------~~~~~-------------~~~~~~~~~t~L~~a~~  221 (364)
                      .+.++.     .+..+|..+..+.+|||.|+..+.++.       .....             ....+..|.||||+|++
T Consensus       203 mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r  282 (929)
T KOG0510|consen  203 MEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAAR  282 (929)
T ss_pred             hhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHH
Confidence            999998     678899999999999999998722221       11111             11233578999999999


Q ss_pred             cCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehh
Q 046373          222 QGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIK  301 (364)
Q Consensus       222 ~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~  301 (364)
                      +|+.+.++.|+.+|++ ++.++.++.||||.|+.+|+..+++.|++ ...-..+|..|..|.||||+|++.|+  -.++.
T Consensus       283 ~G~~~svd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~rllne~D~~g~tpLHlaa~~gH--~~v~q  358 (929)
T KOG0510|consen  283 QGGPESVDNLLGFGAS-INSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTRLLNESDLHGMTPLHLAAKSGH--DRVVQ  358 (929)
T ss_pred             cCChhHHHHHHHcCCc-ccccCCCCCCchHHHHHcccHHHHHHHHh-CcCccccccccccCCCchhhhhhcCH--HHHHH
Confidence            9999999999999999 68899999999999999999999999999 33466789999999999999999999  88888


Q ss_pred             hhcccCCccc---ccccCCCchhHHhhhcccceee
Q 046373          302 VRYDAGGNYG---AVNKQNVSVTDVLIYGSRELTL  333 (364)
Q Consensus       302 ll~~~~~~~~---~~n~~g~t~l~~a~~~~~~~~~  333 (364)
                      +|++.|+++.   ..|..|.||||.|+..+....+
T Consensus       359 lLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av  393 (929)
T KOG0510|consen  359 LLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAV  393 (929)
T ss_pred             HHHhcChhhhcccccccCCchhhhHHHHhccHHHH
Confidence            8999999976   5599999999999766655544

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-38  Score=290.01  Aligned_cols=314  Identities=12%  Similarity=0.030  Sum_probs=219.2

Q ss_pred             CCCChhHHHHHhcC---ChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHh--cCCChHHHHHHHhcCCccccccCCC
Q 046373            4 ISIYPNFFNAAAAG---DAETFKRNTTSDEIESLLTAQTKNTILHINIISQKR--KNGSTKFIGEMLKKCPSLLLQVNAK   78 (364)
Q Consensus         4 ~~~~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~   78 (364)
                      ....++||+|+..|   +.++|++|+++| ++...+|..|.||||+|  +..+  +.+++++|++.  -.++..+..+..
T Consensus        39 ~~G~TaLh~A~~~~~~~~~eivklLLs~G-Adin~kD~~G~TPLh~A--a~~~~~~~eIv~~Ll~~--~~~~~~~~~~~~  113 (672)
T PHA02730         39 RRGNNALHCYVSNKCDTDIKIVRLLLSRG-VERLCRNNEGLTPLGVY--SKRKYVKSQIVHLLISS--YSNASNELTSNI  113 (672)
T ss_pred             CCCCcHHHHHHHcCCcCcHHHHHHHHhCC-CCCcccCCCCCChHHHH--HHcCCCcHHHHHHHHhc--CCCCCccccccc
Confidence            35679999999997   599999999998 88888999999999999  8866  78999999985  113344667777


Q ss_pred             CCcHHHHHHH--cCCHHHHHHHHHHh-hHHHhHhhhcCC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-------CCC
Q 046373           79 GDTPLHLAAK--FGHSNIVSFLIERA-KLAAWQMMRMTN-NEKNTALHEAVCHGNVQVVKILTKQDPDYP-------YSE  147 (364)
Q Consensus        79 g~t~L~~A~~--~~~~~~v~~Ll~~~-~~~~~~~~~~~~-~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~-------~~~  147 (364)
                      +.+|||.++.  +++.++|++|++.+ .++.. ..+..+ ..|.+|++++...+++|+|++|+++|+++.       ...
T Consensus       114 ~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~-~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~  192 (672)
T PHA02730        114 NDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSK-NTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYD  192 (672)
T ss_pred             CCchHHHHHHhcCCcHHHHHHHHHhcCCChhh-hhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccccccc
Confidence            8899999998  88999999999744 33211 111111 378999999999999999999999999974       122


Q ss_pred             CcCCchHHHHHH------hcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHh---------hhhh--------------
Q 046373          148 NKYGKTSLYMAA------EGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH---------FYFE--------------  198 (364)
Q Consensus       148 ~~~~~t~l~~A~------~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~---------~~~~--------------  198 (364)
                      +..+.|.||+++      ..++.+++++|+++|++++.++..|.||||++...         .+++              
T Consensus       193 ~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~  272 (672)
T PHA02730        193 SDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQP  272 (672)
T ss_pred             CCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccch
Confidence            334456666554      34679999999999999999999999999952221         2222              


Q ss_pred             ------------------cchhhhhh-------------------hccCCCch---------------------HHHHHH
Q 046373          199 ------------------NDQTAADI-------------------ADKDRKMT---------------------ALHLAA  220 (364)
Q Consensus       199 ------------------~~~~~~~~-------------------~~~~~~~t---------------------~L~~a~  220 (364)
                                        .+... ..                   .....+.+                     .||.-.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~  351 (672)
T PHA02730        273 YIRGVLADYLNKRFRVTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYL  351 (672)
T ss_pred             hhhhhHHHhhhhhhhcccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHH
Confidence                              00000 00                   00111211                     455545


Q ss_pred             hcC---CHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCC----HHHHHHHHhCccccc--ccccCCCCCCcHHHH--H
Q 046373          221 GQG---HARTVETILFLDPKCYELVDHRGWNFLHYAMVSFK----LHELKILLKNPLARS--LIYEGDNNGNTPLHV--L  289 (364)
Q Consensus       221 ~~~---~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~----~~~~~~ll~~~~~~~--~i~~~d~~g~t~L~~--A  289 (364)
                      ..+   +.+++++|+++|++ ++. +..|+||||+|+..++    .++++.|+++   |+  ++|.+|..|.||||.  +
T Consensus       352 ~~~~~v~ieIvelLIs~GAd-IN~-k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~---Ga~~dIN~kd~~G~T~Lh~~i~  426 (672)
T PHA02730        352 HYGDMVSIPILRCMLDNGAT-MDK-TTDNNYPLHDYFVNNNNIVDVNVVRFIVEN---NGHMAINHVSNNGRLCMYGLIL  426 (672)
T ss_pred             hcCCcCcHHHHHHHHHCCCC-CCc-CCCCCcHHHHHHHHcCCcchHHHHHHHHHc---CCCccccccccCCCchHhHHHH
Confidence            534   57778888888877 354 3677788887777664    6778887776   54  577777777787773  2


Q ss_pred             Hh-cC----Ccce---eehhhhcccCCcccccccCCCchhHHhhhccc
Q 046373          290 AA-IR----PKEF---FKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSR  329 (364)
Q Consensus       290 ~~-~~----~~~~---~~~~ll~~~~~~~~~~n~~g~t~l~~a~~~~~  329 (364)
                      +. .+    ..+.   ..+.+|+.+|++++.+|..|+||||+|+..+.
T Consensus       427 a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~  474 (672)
T PHA02730        427 SRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNN  474 (672)
T ss_pred             HHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCC
Confidence            22 21    1111   23677777777777778888888887755443

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.3e-39  Score=294.95  Aligned_cols=266  Identities=18%  Similarity=0.116  Sum_probs=166.6

Q ss_pred             cCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCC
Q 046373           39 TKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKN  118 (364)
Q Consensus        39 ~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~  118 (364)
                      .+.||||+|  ++.|+.+++++|++.    +.+++..|..|.||||+||..|+.++++.|++.+...     .  ...+.
T Consensus        36 ~~~tPLh~A--~~~g~~e~vk~Ll~~----gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~-----~--~~~~~  102 (477)
T PHA02878         36 IPFIPLHQA--VEARNLDVVKSLLTR----GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC-----S--VFYTL  102 (477)
T ss_pred             cCcchHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcc-----c--cccch
Confidence            445566666  566666666665553    4555555555666666666666666666665554321     1  13445


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhc--CCHHHHHHHHHcCCCCCCCCCC-CCChHHHHHHhh
Q 046373          119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG--RYSEMVIELLENCTSVSHEGPN-GKTALHAAAMHF  195 (364)
Q Consensus       119 t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~--~~~~~v~~Ll~~~~~~~~~~~~-~~~~l~~a~~~~  195 (364)
                      ++++.|+..++.+++++|+..+.......+   ...+......  ...+++++|+++|++++..+.. |.||||+|+...
T Consensus       103 ~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~  179 (477)
T PHA02878        103 VAIKDAFNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENK  179 (477)
T ss_pred             hhHHHHHHcCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCC
Confidence            555655555555555555544322110000   0001110011  1123555555555555555555 555555555542


Q ss_pred             hhhcchhhhh-----hhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHc-CCHHHHHHHHhCc
Q 046373          196 YFENDQTAAD-----IADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVS-FKLHELKILLKNP  269 (364)
Q Consensus       196 ~~~~~~~~~~-----~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~-~~~~~~~~ll~~~  269 (364)
                      ..+....+..     ...+..|.||||.|+..|+.+++++|+++|++ ++.+|..|+||||+|+.. ++.++++.|+++ 
T Consensus       180 ~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~-  257 (477)
T PHA02878        180 DQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLEH-  257 (477)
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHc-
Confidence            2221111111     11223678888899999999999999999998 588899999999999975 689999999998 


Q ss_pred             ccccccccCCC-CCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhhhcc
Q 046373          270 LARSLIYEGDN-NGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGS  328 (364)
Q Consensus       270 ~~~~~i~~~d~-~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~~~  328 (364)
                        |++++.++. .|.||||+|  .++  ...+.+|++.|++++.+|..|.|||++|+...
T Consensus       258 --gadvn~~~~~~g~TpLh~A--~~~--~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        258 --GVDVNAKSYILGLTALHSS--IKS--ERKLKLLLEYGADINSLNSYKLTPLSSAVKQY  311 (477)
T ss_pred             --CCCCCccCCCCCCCHHHHH--ccC--HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHc
Confidence              899998886 799999999  344  44577888999999999999999999997643

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.2e-38  Score=296.42  Aligned_cols=297  Identities=14%  Similarity=0.099  Sum_probs=224.9

Q ss_pred             CCChhHHHHHh--cCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcC--CChHHHHHHHhcCCccccccCCCCC
Q 046373            5 SIYPNFFNAAA--AGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKN--GSTKFIGEMLKKCPSLLLQVNAKGD   80 (364)
Q Consensus         5 ~~~~~l~~A~~--~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~g~   80 (364)
                      ...++||.|+.  .++.+++++|++.| .+....+..|.||||+|  ++.|+.  +++++|++.    |++++.+|..|+
T Consensus       176 ~G~TpLH~A~~n~~~~~eIVklLLe~G-ADVN~kD~~G~TPLH~A--a~~g~~~~eIVklLLe~----GADVN~kD~~G~  248 (764)
T PHA02716        176 TGYGILHAYLGNMYVDIDILEWLCNNG-VNVNLQNNHLITPLHTY--LITGNVCASVIKKIIEL----GGDMDMKCVNGM  248 (764)
T ss_pred             CCCcHHHHHHHhccCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHH--HHcCCCCHHHHHHHHHc----CCCCCCCCCCCC
Confidence            45689998864  46899999999998 77888888999999999  999865  789999986    899999999999


Q ss_pred             cHHHHHH-------------------------------------HcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHH
Q 046373           81 TPLHLAA-------------------------------------KFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHE  123 (364)
Q Consensus        81 t~L~~A~-------------------------------------~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~  123 (364)
                      ||||.|+                                     ..|+.+++++|+++|++     ++.+|..|.||||+
T Consensus       249 TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd-----IN~kD~~G~TPLH~  323 (764)
T PHA02716        249 SPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK-----LHYKDSAGRTCLHQ  323 (764)
T ss_pred             CHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc-----eeccCCCCCCHHHH
Confidence            9999763                                     34667788888888765     67788999999998


Q ss_pred             HHH--cCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHh--------------cCCHHHHHHHHHcCCCCCCCCCCCCCh
Q 046373          124 AVC--HGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE--------------GRYSEMVIELLENCTSVSHEGPNGKTA  187 (364)
Q Consensus       124 a~~--~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~--------------~~~~~~v~~Ll~~~~~~~~~~~~~~~~  187 (364)
                      |+.  .++.+++++|++.|++++ ..|..|.||||+|+.              .++.+++++|+++|++++.++..|.||
T Consensus       324 Aaa~~~~~~eIVklLLe~GADIN-~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TP  402 (764)
T PHA02716        324 YILRHNISTDIIKLLHEYGNDLN-EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTP  402 (764)
T ss_pred             HHHHhCCCchHHHHHHHcCCCCc-cCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCCh
Confidence            764  457899999999999876 678889999998865              367899999999999999999999999


Q ss_pred             HHHHHH-h----------hhhhcchhh------hhhhccCCCchH--HHHHHhcCCHH------------------HHHH
Q 046373          188 LHAAAM-H----------FYFENDQTA------ADIADKDRKMTA--LHLAAGQGHAR------------------TVET  230 (364)
Q Consensus       188 l~~a~~-~----------~~~~~~~~~------~~~~~~~~~~t~--L~~a~~~~~~~------------------~~~~  230 (364)
                      ||.++. .          .+++.....      ........+.+|  +|.++..+..+                  ++..
T Consensus       403 Lh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~  482 (764)
T PHA02716        403 LTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHC  482 (764)
T ss_pred             HHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHH
Confidence            984321 1          222211000      000000122233  45555443322                  2222


Q ss_pred             HHhcCCcccccccCCCCcHHHHHHHcCCH-----HHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCc---ceeehhh
Q 046373          231 ILFLDPKCYELVDHRGWNFLHYAMVSFKL-----HELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPK---EFFKIKV  302 (364)
Q Consensus       231 Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~-----~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~---~~~~~~l  302 (364)
                      ++..+.+ ++..|..|+||||+|+..|+.     +.+++|++.   |+++|.+|+.|+||||+|++.|+.   +...+.+
T Consensus       483 ~ii~~~n-vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~---GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~  558 (764)
T PHA02716        483 AIIERYN-NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSI---QYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKN  558 (764)
T ss_pred             HHHhhcc-ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC---CCCCcccCCCCCCHHHHHHHcCCccccHHHHHHH
Confidence            3333333 466788999999999999876     455999998   999999999999999999999984   2267788


Q ss_pred             hcccCCcccccccCCCchhHHh
Q 046373          303 RYDAGGNYGAVNKQNVSVTDVL  324 (364)
Q Consensus       303 l~~~~~~~~~~n~~g~t~l~~a  324 (364)
                      ++++|++++..      .+++|
T Consensus       559 LL~~ga~~~~~------~l~~~  574 (764)
T PHA02716        559 ILDKRPNVDIV------IIFLD  574 (764)
T ss_pred             HHhcCCCcchH------HHHHH
Confidence            88999998666      36666

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-38  Score=294.80  Aligned_cols=255  Identities=15%  Similarity=0.076  Sum_probs=223.2

Q ss_pred             CCChhHHHHHhcC---ChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHh-cCCChHHHHHHHhcCCccccccCCCCC
Q 046373            5 SIYPNFFNAAAAG---DAETFKRNTTSDEIESLLTAQTKNTILHINIISQKR-KNGSTKFIGEMLKKCPSLLLQVNAKGD   80 (364)
Q Consensus         5 ~~~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~g~   80 (364)
                      ...++||.|+..|   +.++++.|++.| .+....+..|.||||+|  +..+ ..+++++|++.    +++++..+..|.
T Consensus        46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~G-adin~~~~~g~TpLh~A--~~~~~~~~iv~lLl~~----ga~in~~~~~g~  118 (471)
T PHA03095         46 YGKTPLHLYLHYSSEKVKDIVRLLLEAG-ADVNAPERCGFTPLHLY--LYNATTLDVIKLLIKA----GADVNAKDKVGR  118 (471)
T ss_pred             CCCCHHHHHHHhcCCChHHHHHHHHHCC-CCCCCCCCCCCCHHHHH--HHcCCcHHHHHHHHHc----CCCCCCCCCCCC
Confidence            3568999999999   999999999998 77777888999999999  9999 58999999986    889999999999


Q ss_pred             cHHHHHH--HcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCCCCCCcCCchHHH
Q 046373           81 TPLHLAA--KFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHG--NVQVVKILTKQDPDYPYSENKYGKTSLY  156 (364)
Q Consensus        81 t~L~~A~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~--~~e~v~~Ll~~~~~~~~~~~~~~~t~l~  156 (364)
                      ||||+|+  ..++.+++++|++.|++     ++..+..|.||||+|+..+  +.+++++|+++|+++... +..|.||||
T Consensus       119 tpLh~a~~~~~~~~~iv~~Ll~~gad-----~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~Lh  192 (471)
T PHA03095        119 TPLHVYLSGFNINPKVIRLLLRKGAD-----VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-DDRFRSLLH  192 (471)
T ss_pred             CHHHHHhhCCcCCHHHHHHHHHcCCC-----CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc-CCCCCCHHH
Confidence            9999999  55688999999999976     7888999999999998876  689999999999998744 889999999


Q ss_pred             HHHhc--CCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhh---------hhhcchhhhhhhccCCCchHHHHHHhcCCH
Q 046373          157 MAAEG--RYSEMVIELLENCTSVSHEGPNGKTALHAAAMHF---------YFENDQTAADIADKDRKMTALHLAAGQGHA  225 (364)
Q Consensus       157 ~A~~~--~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~---------~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~  225 (364)
                      +|+..  ++.++++.|++.|++++.++..|.||||+|+...         +++.....  ...+..|.||||+|+..|+.
T Consensus       193 ~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~di--n~~d~~g~TpLh~A~~~~~~  270 (471)
T PHA03095        193 HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISI--NARNRYGQTPLHYAAVFNNP  270 (471)
T ss_pred             HHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCH
Confidence            99875  6789999999999999999999999999999752         22222111  12235899999999999999


Q ss_pred             HHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccC
Q 046373          226 RTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEG  278 (364)
Q Consensus       226 ~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~  278 (364)
                      +++++|+++|++ ++..|..|+||||+|+..++.++++.|++.   +.+++..
T Consensus       271 ~~v~~LL~~gad-~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~---~~~~~~~  319 (471)
T PHA03095        271 RACRRLIALGAD-INAVSSDGNTPLSLMVRNNNGRAVRAALAK---NPSAETV  319 (471)
T ss_pred             HHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCCHHHHHHHHHh---CCCHHHH
Confidence            999999999999 588999999999999999999999999997   5555443

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.8e-38  Score=284.15  Aligned_cols=241  Identities=18%  Similarity=0.167  Sum_probs=166.3

Q ss_pred             CCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCc
Q 046373           40 KNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT  119 (364)
Q Consensus        40 g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t  119 (364)
                      .+++||.|  +..|+.+++++|++.    +.+++..+..|.||||+|+..|+.+++++|+++|+.     ++..+..+.|
T Consensus         2 ~~~~L~~A--~~~g~~~iv~~Ll~~----g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-----~~~~~~~~~t   70 (413)
T PHA02875          2 DQVALCDA--ILFGELDIARRLLDI----GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI-----PDVKYPDIES   70 (413)
T ss_pred             CchHHHHH--HHhCCHHHHHHHHHC----CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-----ccccCCCccc
Confidence            35667777  777777777777764    566666666777777777777777777777777754     3445566777


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhc
Q 046373          120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEN  199 (364)
Q Consensus       120 ~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~  199 (364)
                      |||.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.|++++..+.                 
T Consensus        71 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~-----------------  133 (413)
T PHA02875         71 ELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNT-----------------  133 (413)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC-----------------
Confidence            777777777777777777777665545555677777777777777777777777777664443                 


Q ss_pred             chhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCC
Q 046373          200 DQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGD  279 (364)
Q Consensus       200 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d  279 (364)
                                 .|.||||.|+..|+.+++++|++++++ ++..|..|+||||+|+..|+.+++++|++.   |++++..+
T Consensus       134 -----------~g~tpLh~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~---ga~~n~~~  198 (413)
T PHA02875        134 -----------DKFSPLHLAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDS---GANIDYFG  198 (413)
T ss_pred             -----------CCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCcCC
Confidence                       355666666667777777777777776 466677777777777777777777777776   67777776


Q ss_pred             CCCC-cHHHHHHhcCCcceeehhhhcccCCccccc---ccCCCchhHHhh
Q 046373          280 NNGN-TPLHVLAAIRPKEFFKIKVRYDAGGNYGAV---NKQNVSVTDVLI  325 (364)
Q Consensus       280 ~~g~-t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~---n~~g~t~l~~a~  325 (364)
                      ..|. ||+|+|+..++  ...+.+|+++|++++..   +..|.||++++.
T Consensus       199 ~~~~~t~l~~A~~~~~--~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~  246 (413)
T PHA02875        199 KNGCVAALCYAIENNK--IDIVRLFIKRGADCNIMFMIEGEECTILDMIC  246 (413)
T ss_pred             CCCCchHHHHHHHcCC--HHHHHHHHHCCcCcchHhhcCCCchHHHHHHH
Confidence            6653 66777777777  55556666777776543   556677777664

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-37  Score=291.38  Aligned_cols=308  Identities=15%  Similarity=0.044  Sum_probs=214.5

Q ss_pred             CCCChhHHHHHhc---CChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCC
Q 046373            4 ISIYPNFFNAAAA---GDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGD   80 (364)
Q Consensus         4 ~~~~~~l~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~   80 (364)
                      ....++||.|+..   |+.++|++|++.| .+....+..|.||||+|  +..|+.++++.+++.+...+...+..+  ..
T Consensus        30 ~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~g-a~v~~~~~~g~TpL~~A--a~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~  104 (661)
T PHA02917         30 QFKNNALHAYLFNEHCNNVEVVKLLLDSG-TNPLHKNWRQLTPLEEY--TNSRHVKVNKDIAMALLEATGYSNIND--FN  104 (661)
T ss_pred             CCCCcHHHHHHHhhhcCcHHHHHHHHHCC-CCccccCCCCCCHHHHH--HHcCChhHHHHHHHHHHhccCCCCCCC--cc
Confidence            3457899997555   8899999999998 77777888999999999  999987766544443321111122222  23


Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHH--HcCCHHHHHHHHhcCCCCCCC--CCcCC-----
Q 046373           81 TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAV--CHGNVQVVKILTKQDPDYPYS--ENKYG-----  151 (364)
Q Consensus        81 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~--~~~~~e~v~~Ll~~~~~~~~~--~~~~~-----  151 (364)
                      ++++.|+.+++.++|++|+++|++     ++.+|..|.||||.++  ..|+.+++++|+++|++++..  .+..|     
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gad-----in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~  179 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFD-----LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDD  179 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCC-----CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccc
Confidence            566778888888888888888876     6777888888888543  457888888888888876521  11223     


Q ss_pred             ------chHHHHHHh-----------cCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhh--cchhhh--------
Q 046373          152 ------KTSLYMAAE-----------GRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE--NDQTAA--------  204 (364)
Q Consensus       152 ------~t~l~~A~~-----------~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~--~~~~~~--------  204 (364)
                            .||||+|+.           +++.+++++|+++|++++..+..|.||||+|+.....+  ..+.+.        
T Consensus       180 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~~~~  259 (661)
T PHA02917        180 YQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDNTAY  259 (661)
T ss_pred             ccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCccccc
Confidence                  588888875           45788888888888888888888888888888652210  000000        


Q ss_pred             -------------------------------------hhhc------------------------cCCCchHHHH---HH
Q 046373          205 -------------------------------------DIAD------------------------KDRKMTALHL---AA  220 (364)
Q Consensus       205 -------------------------------------~~~~------------------------~~~~~t~L~~---a~  220 (364)
                                                           ....                        ...+.+++|.   ++
T Consensus       260 ~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  339 (661)
T PHA02917        260 SYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYM  339 (661)
T ss_pred             ccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHH
Confidence                                                 0000                        0011112222   22


Q ss_pred             hcCC--HHHHHHHHhcCCccc-----------------------------ccccCCCCcHHHHHHHcC------------
Q 046373          221 GQGH--ARTVETILFLDPKCY-----------------------------ELVDHRGWNFLHYAMVSF------------  257 (364)
Q Consensus       221 ~~~~--~~~~~~Ll~~~~~~~-----------------------------~~~d~~g~t~l~~a~~~~------------  257 (364)
                      ..|.  .+++++|+++|+++.                             ...+..|.||||.|+.++            
T Consensus       340 ~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~  419 (661)
T PHA02917        340 TFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYK  419 (661)
T ss_pred             HcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhh
Confidence            3444  447777777766521                             113446899999987543            


Q ss_pred             -----------CHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhhh
Q 046373          258 -----------KLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIY  326 (364)
Q Consensus       258 -----------~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~  326 (364)
                                 ..++++.|+++   |+++|.+|..|.||||+|+..++  ...+.+|+++|++++.+|..|+|||++|..
T Consensus       420 ~~~~~~~~~~~~~~~v~~Ll~~---GAdIN~kd~~G~TpLh~Aa~~~~--~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~  494 (661)
T PHA02917        420 KGLCDMSYACPILSTINICLPY---LKDINMIDKRGETLLHKAVRYNK--QSLVSLLLESGSDVNIRSNNGYTCIAIAIN  494 (661)
T ss_pred             hccchhhhhhhhHHHHHHHHHC---CCCCCCCCCCCcCHHHHHHHcCC--HHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence                       25567888887   89999999999999999999988  667778889999999999999999999974

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.8e-38  Score=289.33  Aligned_cols=271  Identities=14%  Similarity=0.108  Sum_probs=194.6

Q ss_pred             HHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHH--hcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcC
Q 046373           13 AAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQK--RKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFG   90 (364)
Q Consensus        13 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~   90 (364)
                      .....++++|++|++.| ++.+.. ..|.|+||.+  +..  ++.+++++|++.    |++++..+ .+.||||.|+.++
T Consensus        10 ~~~~~~~~~v~~LL~~G-advN~~-~~g~t~l~~~--~~~~~~~~~iv~~Ll~~----GAdvn~~~-~~~tpL~~a~~~~   80 (494)
T PHA02989         10 YSDTVDKNALEFLLRTG-FDVNEE-YRGNSILLLY--LKRKDVKIKIVKLLIDN----GADVNYKG-YIETPLCAVLRNR   80 (494)
T ss_pred             cCCcCcHHHHHHHHHcC-CCcccc-cCCCCHHHHH--HhcCCCChHHHHHHHHc----CCCccCCC-CCCCcHHHHHhcc
Confidence            34568999999999998 777666 4799999876  443  367999999997    88888876 5789999998765


Q ss_pred             ------CHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhc
Q 046373           91 ------HSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCH---GNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG  161 (364)
Q Consensus        91 ------~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~---~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~  161 (364)
                            +.+++++|+++|++     ++.++..|.||||.|+..   ++.+++++|+++|++++...+..|.||||+|+..
T Consensus        81 ~~~~~~~~~iv~~Ll~~Gad-----in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~  155 (494)
T PHA02989         81 EITSNKIKKIVKLLLKFGAD-----INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLES  155 (494)
T ss_pred             CcchhhHHHHHHHHHHCCCC-----CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHh
Confidence                  46899999999987     788999999999988765   6899999999999998457888999999998764


Q ss_pred             --CCHHHHHHHHHcCCCCCC-CCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcc
Q 046373          162 --RYSEMVIELLENCTSVSH-EGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKC  238 (364)
Q Consensus       162 --~~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~  238 (364)
                        ++.+++++|+++|++++. .+..|.||||.|+..                        ++..++.+++++|+++|++ 
T Consensus       156 ~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~------------------------~~~~~~~~iv~~Ll~~Ga~-  210 (494)
T PHA02989        156 FSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRN------------------------DIDVISIKVIKYLIKKGVN-  210 (494)
T ss_pred             ccCCHHHHHHHHHcCCCccccccccCCChHHHHHhc------------------------ccccccHHHHHHHHhCCCC-
Confidence              589999999999999887 456666666655432                        0112355666666666665 


Q ss_pred             cccccCCCCcHHHHHHHcC------CHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccc
Q 046373          239 YELVDHRGWNFLHYAMVSF------KLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGA  312 (364)
Q Consensus       239 ~~~~d~~g~t~l~~a~~~~------~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~  312 (364)
                      ++..+..+.|++|.++..+      ..+++++|+.    ++++|.+|..|.||||+|+..++  ...+.+|++.|++++.
T Consensus       211 vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~----~advn~~d~~G~TpL~~Aa~~~~--~~~v~~LL~~Gadin~  284 (494)
T PHA02989        211 IETNNNGSESVLESFLDNNKILSKKEFKVLNFILK----YIKINKKDKKGFNPLLISAKVDN--YEAFNYLLKLGDDIYN  284 (494)
T ss_pred             ccccCCccccHHHHHHHhchhhcccchHHHHHHHh----CCCCCCCCCCCCCHHHHHHHhcC--HHHHHHHHHcCCCccc
Confidence            3555555666666554432      2344444433    45566666666666666666666  4444555566666666


Q ss_pred             cccCCCchhHHhhhcc
Q 046373          313 VNKQNVSVTDVLIYGS  328 (364)
Q Consensus       313 ~n~~g~t~l~~a~~~~  328 (364)
                      +|..|+||||+|+..+
T Consensus       285 ~d~~G~TpL~~A~~~~  300 (494)
T PHA02989        285 VSKDGDTVLTYAIKHG  300 (494)
T ss_pred             cCCCCCCHHHHHHHcC
Confidence            6666666666664433

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5e-38  Score=264.89  Aligned_cols=236  Identities=21%  Similarity=0.154  Sum_probs=199.3

Q ss_pred             cCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHH
Q 046373           16 AGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIV   95 (364)
Q Consensus        16 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v   95 (364)
                      .++.+++++|++.+ .  ...|.+|.||||+|  +..|+.+++++|++.    +++.+..  +|.||||+|+..|+.+++
T Consensus         9 ~~~~~~~~~Lis~~-a--~~~D~~G~TpLh~A--a~~g~~eiv~~Ll~~----ga~~n~~--d~~TpLh~Aa~~g~~eiV   77 (284)
T PHA02791          9 WKSKQLKSFLSSKD-A--FKADVHGHSALYYA--IADNNVRLVCTLLNA----GALKNLL--ENEFPLHQAATLEDTKIV   77 (284)
T ss_pred             cCHHHHHHHHHhCC-C--CCCCCCCCcHHHHH--HHcCCHHHHHHHHHC----cCCCcCC--CCCCHHHHHHHCCCHHHH
Confidence            57889999999987 3  35677999999999  999999999999885    5555554  478999999999999999


Q ss_pred             HHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCC-chHHHHHHhcCCHHHHHHHHHcC
Q 046373           96 SFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYG-KTSLYMAAEGRYSEMVIELLENC  174 (364)
Q Consensus        96 ~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~-~t~l~~A~~~~~~~~v~~Ll~~~  174 (364)
                      ++|+++|++     ++..+..|.||||+|+..|+.+++++|+++|++++ ..+..| .||||+|+..|+.+++++|++++
T Consensus        78 ~lLL~~Gad-----vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin-~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~  151 (284)
T PHA02791         78 KILLFSGMD-----DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFLSEI  151 (284)
T ss_pred             HHHHHCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCCCCcHHHHHHHHcCCHHHHHHHHhcC
Confidence            999999876     67889999999999999999999999999999876 455556 58999999999999999999986


Q ss_pred             CCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcH-HHHH
Q 046373          175 TSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNF-LHYA  253 (364)
Q Consensus       175 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~-l~~a  253 (364)
                      .+..                             ....|.||||+|+..|+.+++++|+++|++ ++..|..|.|| ||+|
T Consensus       152 ~~~~-----------------------------d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~t~~L~~A  201 (284)
T PHA02791        152 PSTF-----------------------------DLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLA  201 (284)
T ss_pred             Cccc-----------------------------ccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCChHHHHH
Confidence            4321                             111478999999999999999999999998 57788888877 9999


Q ss_pred             HHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcc
Q 046373          254 MVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNY  310 (364)
Q Consensus       254 ~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~  310 (364)
                      +..|+.++++.|+++   |+++|.+|..| |+|      ++.|  .+++|+++.++.
T Consensus       202 a~~~~~e~v~lLl~~---Ga~in~~~~~~-~~l------~~~e--~~~~ll~~~~~~  246 (284)
T PHA02791        202 IDNKDLEMLQALFKY---DINIYSVNLEN-VLL------DDAE--IAKMIIEKHVEY  246 (284)
T ss_pred             HHcCCHHHHHHHHHC---CCCCccCcccC-ccC------CCHH--HHHHHHHhhhhh
Confidence            999999999999998   99999999854 666      6644  556666887774

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.7e-37  Score=260.45  Aligned_cols=222  Identities=17%  Similarity=0.174  Sum_probs=191.5

Q ss_pred             hcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHH
Q 046373           53 RKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQV  132 (364)
Q Consensus        53 ~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~  132 (364)
                      ++.+++++|+++    +.  +..|.+|.||||+|+..|+.+++++|++.+++     .+..  ++.||||+|+..|+.++
T Consensus        10 ~~~~~~~~Lis~----~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~-----~n~~--d~~TpLh~Aa~~g~~ei   76 (284)
T PHA02791         10 KSKQLKSFLSSK----DA--FKADVHGHSALYYAIADNNVRLVCTLLNAGAL-----KNLL--ENEFPLHQAATLEDTKI   76 (284)
T ss_pred             CHHHHHHHHHhC----CC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCC-----CcCC--CCCCHHHHHHHCCCHHH
Confidence            456777888774    33  46788999999999999999999999999865     3333  47899999999999999


Q ss_pred             HHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCC
Q 046373          133 VKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRK  212 (364)
Q Consensus       133 v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~  212 (364)
                      +++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..                           .+
T Consensus        77 V~lLL~~Gadvn-~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~---------------------------g~  128 (284)
T PHA02791         77 VKILLFSGMDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKT---------------------------GW  128 (284)
T ss_pred             HHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCC---------------------------CC
Confidence            999999999876 67889999999999999999999999999988654432                           23


Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCccccccc-CCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcH-HHHHH
Q 046373          213 MTALHLAAGQGHARTVETILFLDPKCYELVD-HRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTP-LHVLA  290 (364)
Q Consensus       213 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~-L~~A~  290 (364)
                      .||||.|+..|+.+++++|++++++.   .| ..|+||||+|+..|+.++++.|+++   |++++.+|..|.|| ||+|+
T Consensus       129 ~TpL~~Aa~~g~~eivk~LL~~~~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~---gAd~n~~d~~g~t~~L~~Aa  202 (284)
T PHA02791        129 KTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDY---MTSTNTNNSLLFIPDIKLAI  202 (284)
T ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCcc---cccccCccHHHHHHHcCCHHHHHHHHHC---CCCCCcccCCCCChHHHHHH
Confidence            58999999999999999999987653   23 3589999999999999999999998   99999999999987 99999


Q ss_pred             hcCCcceeehhhhcccCCcccccccCCCchhHHh
Q 046373          291 AIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVL  324 (364)
Q Consensus       291 ~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a  324 (364)
                      ..|+  ...+.+|+++|++++.+|..| ++++.|
T Consensus       203 ~~~~--~e~v~lLl~~Ga~in~~~~~~-~~l~~~  233 (284)
T PHA02791        203 DNKD--LEMLQALFKYDINIYSVNLEN-VLLDDA  233 (284)
T ss_pred             HcCC--HHHHHHHHHCCCCCccCcccC-ccCCCH
Confidence            9999  777788889999999999954 777554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.7e-37  Score=277.65  Aligned_cols=242  Identities=16%  Similarity=0.145  Sum_probs=214.1

Q ss_pred             ChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHH
Q 046373            7 YPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLA   86 (364)
Q Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A   86 (364)
                      ..+|+.|++.|+++++++|++.| ++....+..|.||||+|  +..++.+++++|++.    +.+.+..+..+.||||.|
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g-~~~n~~~~~g~tpL~~A--~~~~~~~~v~~Ll~~----ga~~~~~~~~~~t~L~~A   75 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIG-INPNFEIYDGISPIKLA--MKFRDSEAIKLLMKH----GAIPDVKYPDIESELHDA   75 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCC-CCCCccCCCCCCHHHHH--HHcCCHHHHHHHHhC----CCCccccCCCcccHHHHH
Confidence            35899999999999999999998 77777777999999999  999999999999986    777788888999999999


Q ss_pred             HHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHH
Q 046373           87 AKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEM  166 (364)
Q Consensus        87 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~  166 (364)
                      +..|+.+++++|++.+...    .+..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.++
T Consensus        76 ~~~g~~~~v~~Ll~~~~~~----~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~-~~~~~g~tpLh~A~~~~~~~~  150 (413)
T PHA02875         76 VEEGDVKAVEELLDLGKFA----DDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD-IPNTDKFSPLHLAVMMGDIKG  150 (413)
T ss_pred             HHCCCHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999998642    24456789999999999999999999999999976 677889999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCC
Q 046373          167 VIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRG  246 (364)
Q Consensus       167 v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g  246 (364)
                      +++|+++|++++.++.                            .|.||||.|+..|+.+++++|+++|+++ +..+..|
T Consensus       151 v~~Ll~~g~~~~~~d~----------------------------~g~TpL~~A~~~g~~eiv~~Ll~~ga~~-n~~~~~~  201 (413)
T PHA02875        151 IELLIDHKACLDIEDC----------------------------CGCTPLIIAMAKGDIAICKMLLDSGANI-DYFGKNG  201 (413)
T ss_pred             HHHHHhcCCCCCCCCC----------------------------CCCCHHHHHHHcCCHHHHHHHHhCCCCC-CcCCCCC
Confidence            9999999998876554                            5778888888899999999999999995 6667665


Q ss_pred             -CcHHHHHHHcCCHHHHHHHHhCcccccccccC---CCCCCcHHHHHHhc
Q 046373          247 -WNFLHYAMVSFKLHELKILLKNPLARSLIYEG---DNNGNTPLHVLAAI  292 (364)
Q Consensus       247 -~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~---d~~g~t~L~~A~~~  292 (364)
                       .||+|+|+..++.+++++|+++   |++++..   +..+.||++++...
T Consensus       202 ~~t~l~~A~~~~~~~iv~~Ll~~---gad~n~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        202 CVAALCYAIENNKIDIVRLFIKR---GADCNIMFMIEGEECTILDMICNM  248 (413)
T ss_pred             CchHHHHHHHcCCHHHHHHHHHC---CcCcchHhhcCCCchHHHHHHHhh
Confidence             5899999999999999999998   8887765   56789999987654

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.9e-37  Score=225.73  Aligned_cols=208  Identities=24%  Similarity=0.227  Sum_probs=142.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHH
Q 046373           79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTN-NEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYM  157 (364)
Q Consensus        79 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~  157 (364)
                      +.++.+.++......-++.++++.+.   . ++.++ .+|+||||+||..|+.+++.+|++.....+...|..|+||||+
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~k---S-L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhi   78 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPK---S-LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHI   78 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChh---h-hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhh
Confidence            34556666666655566666665542   1 33333 3777777777777777777777753322233456677777777


Q ss_pred             HHhcCCHHHHHHHHHc-CCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCC
Q 046373          158 AAEGRYSEMVIELLEN-CTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDP  236 (364)
Q Consensus       158 A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~  236 (364)
                      |+..|+.++|+.|+.+ |+++|..+.                            .|+|+||+|+..|+.+++++|+++|+
T Consensus        79 a~s~g~~evVk~Ll~r~~advna~tn----------------------------~G~T~LHyAagK~r~eIaqlLle~ga  130 (226)
T KOG4412|consen   79 AASNGNDEVVKELLNRSGADVNATTN----------------------------GGQTCLHYAAGKGRLEIAQLLLEKGA  130 (226)
T ss_pred             hhhcCcHHHHHHHhcCCCCCcceecC----------------------------CCcceehhhhcCChhhHHHHHHhcCC
Confidence            7777777777777776 666654332                            56677777777777777777777776


Q ss_pred             cccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccC
Q 046373          237 KCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQ  316 (364)
Q Consensus       237 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~  316 (364)
                      . ++.+|..|.||||-|+.-|.++++++|+..   ++.+|.+|+.|+||||.|..-++  .....+|.++|++....|++
T Consensus       131 ~-i~~kD~~~qtplHRAAavGklkvie~Li~~---~a~~n~qDk~G~TpL~~al~e~~--~d~a~lLV~~gAd~~~edke  204 (226)
T KOG4412|consen  131 L-IRIKDKQGQTPLHRAAAVGKLKVIEYLISQ---GAPLNTQDKYGFTPLHHALAEGH--PDVAVLLVRAGADTDREDKE  204 (226)
T ss_pred             C-CcccccccCchhHHHHhccchhhHHHHHhc---CCCCCcccccCccHHHHHHhccC--chHHHHHHHhccceeecccc
Confidence            6 466777777777777777777777777776   67777777777777777766666  55556666777777777777


Q ss_pred             CCchhHHhh
Q 046373          317 NVSVTDVLI  325 (364)
Q Consensus       317 g~t~l~~a~  325 (364)
                      | ||+..|+
T Consensus       205 ~-t~~~~a~  212 (226)
T KOG4412|consen  205 G-TALRIAC  212 (226)
T ss_pred             C-chHHHHH
Confidence            7 7777765

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=4.4e-38  Score=298.08  Aligned_cols=319  Identities=23%  Similarity=0.251  Sum_probs=259.7

Q ss_pred             CCCCCCChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCC
Q 046373            1 MNPISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGD   80 (364)
Q Consensus         1 m~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~   80 (364)
                      +++....+++|.|+..+.+++++.++.+| .+....+..|.+|||.|  +..|+.+++.+++..    ++..+..+..|.
T Consensus       204 a~~~~~~tpl~~a~~~nri~~~eLll~~g-adv~a~d~~gl~~lh~a--~~~g~~~i~~~l~~~----ga~~~~~~vr~~  276 (1143)
T KOG4177|consen  204 ASALNGFTPLHIACKKNRIKVVELLLKHG-ADVSAKDESGLTPLHVA--AFMGHLDIVKLLLQH----GASVNVSTVRGE  276 (1143)
T ss_pred             ccccCCCCchhhhccccccceeeeeeecc-CcCCcccccCccHHHHH--HhccchhHHHHHHhc----ccccCccccccc
Confidence            45667778899999999999999888888 77777888899999999  999999999988886    778888888899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhhHH----------------------------------------------------Hh-
Q 046373           81 TPLHLAAKFGHSNIVSFLIERAKLA----------------------------------------------------AW-  107 (364)
Q Consensus        81 t~L~~A~~~~~~~~v~~Ll~~~~~~----------------------------------------------------~~-  107 (364)
                      ||+|.|+..+..+++++|+++|+++                                                    .. 
T Consensus       277 tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~  356 (1143)
T KOG4177|consen  277 TPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEV  356 (1143)
T ss_pred             CcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHH
Confidence            9999999999999999998887760                                                    00 


Q ss_pred             --------HhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 046373          108 --------QMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH  179 (364)
Q Consensus       108 --------~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  179 (364)
                              ..-......+.||+|.|+.+|..+.+++++..|.+ .+..+..|.||||.|+.+++.++++.+++.|++++.
T Consensus       357 ~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~-~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~  435 (1143)
T KOG4177|consen  357 AGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGAD-PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNA  435 (1143)
T ss_pred             HHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCC-cccCCCCCcceeeehhhccCcceEEEEeccCCChhh
Confidence                    11123456678888888888889999999999888 457888899999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHhh-hhhcchhhhhh-----hccCCCchHHHHHHhcCCHHHHHHHHhc-------------------
Q 046373          180 EGPNGKTALHAAAMHF-YFENDQTAADI-----ADKDRKMTALHLAAGQGHARTVETILFL-------------------  234 (364)
Q Consensus       180 ~~~~~~~~l~~a~~~~-~~~~~~~~~~~-----~~~~~~~t~L~~a~~~~~~~~~~~Ll~~-------------------  234 (364)
                      .+..|.|++|.|+... +.+........     .....|.||||+|+..|+.+++..|++.                   
T Consensus       436 ~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~  515 (1143)
T KOG4177|consen  436 KAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAA  515 (1143)
T ss_pred             HhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhh
Confidence            9999999999988875 44433222222     1224677777777777777776666654                   


Q ss_pred             --------------CCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeeh
Q 046373          235 --------------DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKI  300 (364)
Q Consensus       235 --------------~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~  300 (364)
                                    |.+ ++.++..|+||||.|+.+|+..+|++|+++   +++++.+++.|+||||.|+..|+  ..++
T Consensus       516 ~~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~---gAdv~ak~~~G~TPLH~Aa~~G~--~~i~  589 (1143)
T KOG4177|consen  516 DEDTVKVAKILLEHGAN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLEH---GADVNAKDKLGYTPLHQAAQQGH--NDIA  589 (1143)
T ss_pred             hhhhHHHHHHHhhcCCc-eehhcccccchHHHHHhcCCchHHHHhhhC---CccccccCCCCCChhhHHHHcCh--HHHH
Confidence                          333 345777889999999999999999999999   99999999999999999999998  8888


Q ss_pred             hhhcccCCcccccccCCCchhHHhhhcccceee
Q 046373          301 KVRYDAGGNYGAVNKQNVSVTDVLIYGSRELTL  333 (364)
Q Consensus       301 ~ll~~~~~~~~~~n~~g~t~l~~a~~~~~~~~~  333 (364)
                      .+|+++|+++|..+-+|.|||++|.+.+.-...
T Consensus       590 ~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~  622 (1143)
T KOG4177|consen  590 ELLLKHGASVNAADLDGFTPLHIAVRLGYLSVV  622 (1143)
T ss_pred             HHHHHcCCCCCcccccCcchhHHHHHhcccchh
Confidence            888899999999999999999999766655443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-36  Score=225.22  Aligned_cols=207  Identities=25%  Similarity=0.292  Sum_probs=164.9

Q ss_pred             chHHHHHHHHHhcCCChHHHHHHHhcCCccccccCC-CCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcH
Q 046373           42 TILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNA-KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA  120 (364)
Q Consensus        42 t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~  120 (364)
                      ++.+.+  +......-++.+++   +.+..++.++. +|+||||+||..|+.+++++|+....    ..++.+|..|+||
T Consensus         5 ~~~~~~--~~~~~~~kveel~~---s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~n----v~~ddkDdaGWtP   75 (226)
T KOG4412|consen    5 SLGKAI--CENCEEFKVEELIQ---SDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPN----VKPDDKDDAGWTP   75 (226)
T ss_pred             chHHHH--HhhchHHHHHHHHh---cChhhhhccccccCCceeeeeeecCchhHHHHHHhcCC----CCCCCccccCCch
Confidence            444444  44444444444444   44434454444 89999999999999999999996332    2267778889999


Q ss_pred             HHHHHHcCCHHHHHHHHhc-CCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhc
Q 046373          121 LHEAVCHGNVQVVKILTKQ-DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEN  199 (364)
Q Consensus       121 l~~a~~~~~~e~v~~Ll~~-~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~  199 (364)
                      ||+|+..|+.|+|+.|+.+ +++++ ..+..|.||||||+..|+.+++++|+++|+.++.+|.                 
T Consensus        76 lhia~s~g~~evVk~Ll~r~~advn-a~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~-----------------  137 (226)
T KOG4412|consen   76 LHIAASNGNDEVVKELLNRSGADVN-ATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDK-----------------  137 (226)
T ss_pred             hhhhhhcCcHHHHHHHhcCCCCCcc-eecCCCcceehhhhcCChhhHHHHHHhcCCCCccccc-----------------
Confidence            9999999999999999988 77765 6777899999999999999999999999988876665                 


Q ss_pred             chhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCC
Q 046373          200 DQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGD  279 (364)
Q Consensus       200 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d  279 (364)
                                 .++||||.|+.-|..+++++|+..++. ++..|..|+||||.|..-++.+....|++.   |++++..|
T Consensus       138 -----------~~qtplHRAAavGklkvie~Li~~~a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~~---gAd~~~ed  202 (226)
T KOG4412|consen  138 -----------QGQTPLHRAAAVGKLKVIEYLISQGAP-LNTQDKYGFTPLHHALAEGHPDVAVLLVRA---GADTDRED  202 (226)
T ss_pred             -----------ccCchhHHHHhccchhhHHHHHhcCCC-CCcccccCccHHHHHHhccCchHHHHHHHh---ccceeecc
Confidence                       678888888889999999999998866 688999999999999888899999999988   89999999


Q ss_pred             CCCCcHHHHHHh
Q 046373          280 NNGNTPLHVLAA  291 (364)
Q Consensus       280 ~~g~t~L~~A~~  291 (364)
                      +.| ||+..|.-
T Consensus       203 ke~-t~~~~a~~  213 (226)
T KOG4412|consen  203 KEG-TALRIACN  213 (226)
T ss_pred             ccC-chHHHHHH
Confidence            988 98876643

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.7e-36  Score=275.02  Aligned_cols=258  Identities=14%  Similarity=0.103  Sum_probs=209.8

Q ss_pred             CChhHHHHHhc--CChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHh------cCCChHHHHHHHhcCCccccccCC
Q 046373            6 IYPNFFNAAAA--GDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKR------KNGSTKFIGEMLKKCPSLLLQVNA   77 (364)
Q Consensus         6 ~~~~l~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~------~~~~~~~l~~~l~~~~~~~~~~~~   77 (364)
                      ..++|+.++..  ++.++|+.|++.| ++....+ .+.||||.|  +..+      ..+++++|++.    |++++..|.
T Consensus        35 g~t~l~~~~~~~~~~~~iv~~Ll~~G-Advn~~~-~~~tpL~~a--~~~~~~~~~~~~~iv~~Ll~~----Gadin~~d~  106 (494)
T PHA02989         35 GNSILLLYLKRKDVKIKIVKLLIDNG-ADVNYKG-YIETPLCAV--LRNREITSNKIKKIVKLLLKF----GADINLKTF  106 (494)
T ss_pred             CCCHHHHHHhcCCCChHHHHHHHHcC-CCccCCC-CCCCcHHHH--HhccCcchhhHHHHHHHHHHC----CCCCCCCCC
Confidence            45677655544  3789999999998 7666665 679999998  7654      45678888876    899999999


Q ss_pred             CCCcHHHHHHHc---CCHHHHHHHHHHhhHHHhHhh-hcCCCCCCcHHHHHHHc--CCHHHHHHHHhcCCCCCCCCCcCC
Q 046373           78 KGDTPLHLAAKF---GHSNIVSFLIERAKLAAWQMM-RMTNNEKNTALHEAVCH--GNVQVVKILTKQDPDYPYSENKYG  151 (364)
Q Consensus        78 ~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~-~~~~~~g~t~l~~a~~~--~~~e~v~~Ll~~~~~~~~~~~~~~  151 (364)
                      .|.||||.|+..   ++.+++++|+++|++     + +..+..|.||||+|+..  ++.+++++|+++|+++....+..|
T Consensus       107 ~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gad-----in~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g  181 (494)
T PHA02989        107 NGVSPIVCFIYNSNINNCDMLRFLLSKGIN-----VNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYG  181 (494)
T ss_pred             CCCcHHHHHHHhcccCcHHHHHHHHHCCCC-----cccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccC
Confidence            999999998766   678999999999987     6 67889999999998765  589999999999999875467789


Q ss_pred             chHHHHHHhcC----CHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHH
Q 046373          152 KTSLYMAAEGR----YSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHART  227 (364)
Q Consensus       152 ~t~l~~A~~~~----~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~  227 (364)
                      .||||+|+..+    +.+++++|++.|++++..+..+.++++.++...                      .+...+..++
T Consensus       182 ~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~----------------------~~~~~~~~~i  239 (494)
T PHA02989        182 LTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNN----------------------KILSKKEFKV  239 (494)
T ss_pred             CChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhc----------------------hhhcccchHH
Confidence            99999998764    899999999999999999888888888765420                      1223455677


Q ss_pred             HHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhh
Q 046373          228 VETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVR  303 (364)
Q Consensus       228 ~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll  303 (364)
                      +++|+. +++ ++.+|..|+||||+|+..++.+++++|++.   |++++.+|..|.||||+|++.++.+++..++.
T Consensus       240 l~~l~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~---Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~  310 (494)
T PHA02989        240 LNFILK-YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLKL---GDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQ  310 (494)
T ss_pred             HHHHHh-CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            776665 566 688888999999999999999999999987   88999999999999999999998555444443

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.3e-36  Score=275.49  Aligned_cols=278  Identities=17%  Similarity=0.133  Sum_probs=200.2

Q ss_pred             ChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHc-----CCH
Q 046373           18 DAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKF-----GHS   92 (364)
Q Consensus        18 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~-----~~~   92 (364)
                      +++.|+.|++.+..  ... ..+.|+++.++....++.+++++|+++    |++++..|..|.||||.|+.+     ++.
T Consensus        17 ~~~~v~~ll~~~~~--~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~----Gadvn~~d~~g~TpL~~~~~n~~~~~~~~   89 (489)
T PHA02798         17 KLSTVKLLIKSCNP--NEI-VNEYSIFQKYLQRDSPSTDIVKLFINL----GANVNGLDNEYSTPLCTILSNIKDYKHML   89 (489)
T ss_pred             cHHHHHHHHhcCCh--hhh-cccchHHHHHHhCCCCCHHHHHHHHHC----CCCCCCCCCCCCChHHHHHHhHHhHHhHH
Confidence            67899999986522  222 367788776622344577889999886    889999999999999998864     668


Q ss_pred             HHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcC---CHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCC---HHH
Q 046373           93 NIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHG---NVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRY---SEM  166 (364)
Q Consensus        93 ~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~---~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~---~~~  166 (364)
                      +++++|+++|++     ++..+..|.||||+|+..+   +.+++++|+++|++++ ..+..|.||||+|+..++   .++
T Consensus        90 ~iv~~Ll~~Gad-----iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~tpL~~a~~~~~~~~~~v  163 (489)
T PHA02798         90 DIVKILIENGAD-----INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT-LLDKDGFTMLQVYLQSNHHIDIEI  163 (489)
T ss_pred             HHHHHHHHCCCC-----CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCcchHHH
Confidence            999999999976     7888999999999999875   7899999999999976 788889999999999987   999


Q ss_pred             HHHHHHcCCCCCCCC-CCCCChHHHHHHh-----------hhhhcchhhhhhhccCCCchHHH-------HHHhcCCHHH
Q 046373          167 VIELLENCTSVSHEG-PNGKTALHAAAMH-----------FYFENDQTAADIADKDRKMTALH-------LAAGQGHART  227 (364)
Q Consensus       167 v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~-----------~~~~~~~~~~~~~~~~~~~t~L~-------~a~~~~~~~~  227 (364)
                      +++|++.|++++..+ ..|.||+|.++..           .+++.+....  .....+.++++       .+...+..++
T Consensus       164 v~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~--~~~~~~~~~~~~~l~~l~~~~~~~~~~i  241 (489)
T PHA02798        164 IKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIIN--KENKSHKKKFMEYLNSLLYDNKRFKKNI  241 (489)
T ss_pred             HHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcc--cCCccccchHHHHHHHHHhhcccchHHH
Confidence            999999999998875 4677888876643           1222211110  01123344443       1334455666


Q ss_pred             HHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccC
Q 046373          228 VETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAG  307 (364)
Q Consensus       228 ~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~  307 (364)
                      +.+|+. +.+ ++.+|..|+||||+|+..++.+++++|++.   |++++.+|..|.||||+|++.++  ...+..+++.+
T Consensus       242 ~~~l~~-~~d-vN~~d~~G~TPL~~A~~~~~~~~v~~LL~~---GAdin~~d~~G~TpL~~A~~~~~--~~iv~~lL~~~  314 (489)
T PHA02798        242 LDFIFS-YID-INQVDELGFNPLYYSVSHNNRKIFEYLLQL---GGDINIITELGNTCLFTAFENES--KFIFNSILNKK  314 (489)
T ss_pred             HHHHHh-cCC-CCCcCcCCccHHHHHHHcCcHHHHHHHHHc---CCcccccCCCCCcHHHHHHHcCc--HHHHHHHHccC
Confidence            666554 344 566777777777777777777777777776   77777777777777777777776  44555555666


Q ss_pred             CcccccccCC
Q 046373          308 GNYGAVNKQN  317 (364)
Q Consensus       308 ~~~~~~n~~g  317 (364)
                      ++++..+...
T Consensus       315 ~~~~~i~~~~  324 (489)
T PHA02798        315 PNKNTISYTY  324 (489)
T ss_pred             CCHHHHHHHH
Confidence            6665444433

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-35  Score=273.67  Aligned_cols=249  Identities=14%  Similarity=0.083  Sum_probs=210.3

Q ss_pred             HHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHH-----hcCCChHHHHHHHhcCCccccccCCCCCcHHHHH
Q 046373           12 NAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQK-----RKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLA   86 (364)
Q Consensus        12 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A   86 (364)
                      .+...++.++|++|++.| .+....+..|.||||.|  +..     +..+++++|++.    |++++..|..|.||||+|
T Consensus        44 l~~~~~~~~iv~~Ll~~G-advn~~d~~g~TpL~~~--~~n~~~~~~~~~iv~~Ll~~----GadiN~~d~~G~TpLh~a  116 (489)
T PHA02798         44 LQRDSPSTDIVKLFINLG-ANVNGLDNEYSTPLCTI--LSNIKDYKHMLDIVKILIEN----GADINKKNSDGETPLYCL  116 (489)
T ss_pred             HhCCCCCHHHHHHHHHCC-CCCCCCCCCCCChHHHH--HHhHHhHHhHHHHHHHHHHC----CCCCCCCCCCcCcHHHHH
Confidence            344556899999999998 77777888999999998  653     667889999886    899999999999999999


Q ss_pred             HHcC---CHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCC---HHHHHHHHhcCCCCCCCCCcCCchHHHHHHh
Q 046373           87 AKFG---HSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGN---VQVVKILTKQDPDYPYSENKYGKTSLYMAAE  160 (364)
Q Consensus        87 ~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~---~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  160 (364)
                      +.++   +.+++++|+++|++     ++..+..|.||||+|+..++   .+++++|+++|++++...+..|.||+|.++.
T Consensus       117 ~~~~~~~~~~iv~~Ll~~Gad-----vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~  191 (489)
T PHA02798        117 LSNGYINNLEILLFMIENGAD-----TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFK  191 (489)
T ss_pred             HHcCCcChHHHHHHHHHcCCC-----ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHH
Confidence            9986   68999999999987     78899999999999999987   9999999999999875556678999999876


Q ss_pred             c----CCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHh-------------hhhhcchhhhhhhccCCCchHHHHHHhcC
Q 046373          161 G----RYSEMVIELLENCTSVSHEGPNGKTALHAAAMH-------------FYFENDQTAADIADKDRKMTALHLAAGQG  223 (364)
Q Consensus       161 ~----~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~-------------~~~~~~~~~~~~~~~~~~~t~L~~a~~~~  223 (364)
                      .    ++.+++++|+++|++++..+..+.++++.....             .++...  ......+..|.||||.|+..|
T Consensus       192 ~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~--~dvN~~d~~G~TPL~~A~~~~  269 (489)
T PHA02798        192 YNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSY--IDINQVDELGFNPLYYSVSHN  269 (489)
T ss_pred             hccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhc--CCCCCcCcCCccHHHHHHHcC
Confidence            4    479999999999999999999999887732221             111111  111223457999999999999


Q ss_pred             CHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccC
Q 046373          224 HARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEG  278 (364)
Q Consensus       224 ~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~  278 (364)
                      +.+++++|+++|++ ++..|..|+||||+|+..++.++++.|+++   +.+++..
T Consensus       270 ~~~~v~~LL~~GAd-in~~d~~G~TpL~~A~~~~~~~iv~~lL~~---~~~~~~i  320 (489)
T PHA02798        270 NRKIFEYLLQLGGD-INIITELGNTCLFTAFENESKFIFNSILNK---KPNKNTI  320 (489)
T ss_pred             cHHHHHHHHHcCCc-ccccCCCCCcHHHHHHHcCcHHHHHHHHcc---CCCHHHH
Confidence            99999999999999 588999999999999999999999999997   6666544

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.6e-35  Score=270.44  Aligned_cols=239  Identities=20%  Similarity=0.203  Sum_probs=193.9

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCC
Q 046373           72 LLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYG  151 (364)
Q Consensus        72 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~  151 (364)
                      .+..+..+.||||.|+..|+.++|++|++.|++     ++..+..|.||||+|+..|+.++++.|++.+.....   ..+
T Consensus        30 ~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gad-----vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~---~~~  101 (477)
T PHA02878         30 STSASLIPFIPLHQAVEARNLDVVKSLLTRGHN-----VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV---FYT  101 (477)
T ss_pred             cCcccccCcchHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc---ccc
Confidence            344556789999999999999999999999976     788899999999999999999999999998765432   457


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC------C-CChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCC
Q 046373          152 KTSLYMAAEGRYSEMVIELLENCTSVSHEGPN------G-KTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGH  224 (364)
Q Consensus       152 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~------~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~  224 (364)
                      .+|++.|+..++.+++++|+..+.+.......      . ...+..-+...+++.+... .......|.||||.|+..|+
T Consensus       102 ~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~  180 (477)
T PHA02878        102 LVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKD  180 (477)
T ss_pred             hhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCC
Confidence            89999999999999999999886442211100      0 0001111223444443322 22222349999999999999


Q ss_pred             HHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhc-CCcceeehhhh
Q 046373          225 ARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAI-RPKEFFKIKVR  303 (364)
Q Consensus       225 ~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~-~~~~~~~~~ll  303 (364)
                      .+++++|+++|++ ++..|..|+||||+|+..++.++++.|++.   |++++.+|..|.||||+|+.. ++  ...+.+|
T Consensus       181 ~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~---ga~in~~d~~g~TpLh~A~~~~~~--~~iv~~L  254 (477)
T PHA02878        181 QRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLEN---GASTDARDKCGNTPLHISVGYCKD--YDILKLL  254 (477)
T ss_pred             HHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHhcCC--HHHHHHH
Confidence            9999999999998 588999999999999999999999999998   999999999999999999976 56  6777888


Q ss_pred             cccCCccccccc-CCCchhHHhh
Q 046373          304 YDAGGNYGAVNK-QNVSVTDVLI  325 (364)
Q Consensus       304 ~~~~~~~~~~n~-~g~t~l~~a~  325 (364)
                      +++|++++.++. .|.||||+|.
T Consensus       255 l~~gadvn~~~~~~g~TpLh~A~  277 (477)
T PHA02878        255 LEHGVDVNAKSYILGLTALHSSI  277 (477)
T ss_pred             HHcCCCCCccCCCCCCCHHHHHc
Confidence            899999999886 7999999994

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.5e-34  Score=269.39  Aligned_cols=286  Identities=17%  Similarity=0.134  Sum_probs=195.1

Q ss_pred             hhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCC---CC-----
Q 046373            8 PNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNA---KG-----   79 (364)
Q Consensus         8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~g-----   79 (364)
                      .+++.|+..|++++|++|++.| ++....+..|.||||+|+.+..|+.+++++|+++    |++++..|.   .|     
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~G-adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~----Ga~vn~~d~~~~~g~~~~~  179 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHG-FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN----GCSVLYEDEDDEYGYAYDD  179 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcC-CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHc----CCCcccccccccccccccc
Confidence            4456677777888888888877 7677777788888885521346788888888876    666654432   23     


Q ss_pred             ------CcHHHHHHH-----------cCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCH--HHHHHHHhcC
Q 046373           80 ------DTPLHLAAK-----------FGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV--QVVKILTKQD  140 (364)
Q Consensus        80 ------~t~L~~A~~-----------~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~--e~v~~Ll~~~  140 (364)
                            .||||+|+.           .++.++|++|+++|++     ++..+..|.||||+|+..|+.  |++++|++ |
T Consensus       180 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-----vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g  253 (661)
T PHA02917        180 YQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-----PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-G  253 (661)
T ss_pred             ccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-----cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-C
Confidence                  488888875           4577888888888866     677778888888888887764  67777764 5


Q ss_pred             CCCCC---CCCcCCchHHHHHH----------------------------------------------------------
Q 046373          141 PDYPY---SENKYGKTSLYMAA----------------------------------------------------------  159 (364)
Q Consensus       141 ~~~~~---~~~~~~~t~l~~A~----------------------------------------------------------  159 (364)
                      +++..   ..+..+.+|+++|+                                                          
T Consensus       254 ~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (661)
T PHA02917        254 IDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQH  333 (661)
T ss_pred             CcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHH
Confidence            43321   12223333333333                                                          


Q ss_pred             ------hcCC--HHHHHHHHHcCCCCCCCCCCCCChHHHH---HHhhhhhcchhhhhhhccCCCchHHHHHHhcC-----
Q 046373          160 ------EGRY--SEMVIELLENCTSVSHEGPNGKTALHAA---AMHFYFENDQTAADIADKDRKMTALHLAAGQG-----  223 (364)
Q Consensus       160 ------~~~~--~~~v~~Ll~~~~~~~~~~~~~~~~l~~a---~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~-----  223 (364)
                            ..|.  .+++++|++.|++++.++..|+++....   +...++........ .....|.||||.|++.+     
T Consensus       334 ~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~-~~~~~G~TpL~~a~~~~~~~~~  412 (661)
T PHA02917        334 ILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAV-NHLDDGEIPIGHLCKSNYGCYN  412 (661)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCcc-ccCCCCCChhHHHHHhcccchh
Confidence                  1222  3355555555555555555555532110   00122221111111 12336999999987533     


Q ss_pred             ------------------CHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcH
Q 046373          224 ------------------HARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTP  285 (364)
Q Consensus       224 ------------------~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~  285 (364)
                                        ..+++++|+.+|++ ++.+|..|+||||+|+..++.+++++|++.   |++++.+|..|.||
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAd-IN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~---GAdin~~d~~G~T~  488 (661)
T PHA02917        413 FYTYTYKKGLCDMSYACPILSTINICLPYLKD-INMIDKRGETLLHKAVRYNKQSLVSLLLES---GSDVNIRSNNGYTC  488 (661)
T ss_pred             hhhhhhhhccchhhhhhhhHHHHHHHHHCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHC---cCCCCCCCCCCCCH
Confidence                              35678999999999 688999999999999999999999999998   99999999999999


Q ss_pred             HHHHHh-cCCcceeehhhhcccCCccc
Q 046373          286 LHVLAA-IRPKEFFKIKVRYDAGGNYG  311 (364)
Q Consensus       286 L~~A~~-~~~~~~~~~~ll~~~~~~~~  311 (364)
                      ||+|+. .++  ...+.+++.+|++++
T Consensus       489 L~~A~~~~~~--~~iv~~LL~~ga~i~  513 (661)
T PHA02917        489 IAIAINESRN--IELLKMLLCHKPTLD  513 (661)
T ss_pred             HHHHHHhCCC--HHHHHHHHHcCCChh
Confidence            999996 567  566677778888865

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1e-34  Score=245.24  Aligned_cols=217  Identities=26%  Similarity=0.302  Sum_probs=163.7

Q ss_pred             hHHHHHhcCChHHhhhccCChh---H-HHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCc-----cccccCCCC
Q 046373            9 NFFNAAAAGDAETFKRNTTSDE---I-ESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPS-----LLLQVNAKG   79 (364)
Q Consensus         9 ~l~~A~~~g~~~~v~~ll~~~~---~-~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~g   79 (364)
                      ..+.|++.|.+..+..|+-...   + +......+|.|||-+|  +++|+.+++++|+++....+.     .++-...+|
T Consensus         7 ~~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~ia--aRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Ieg   84 (615)
T KOG0508|consen    7 VVINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIA--ARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEG   84 (615)
T ss_pred             HHHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeee--hhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCC
Confidence            3457888888888887776521   1 1124445778888888  888888888888886532221     234444567


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHH
Q 046373           80 DTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAA  159 (364)
Q Consensus        80 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  159 (364)
                      -+||+.|+..||+++|+.|++++++     ++.......|||.-||.-|+.+++++|+++|++.. ..|+.|.|.||+||
T Consensus        85 appLWaAsaAGHl~vVk~L~~~ga~-----VN~tT~TNStPLraACfDG~leivKyLvE~gad~~-IanrhGhTcLmIa~  158 (615)
T KOG0508|consen   85 APPLWAASAAGHLEVVKLLLRRGAS-----VNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPE-IANRHGHTCLMIAC  158 (615)
T ss_pred             CchhhHHhccCcHHHHHHHHHhcCc-----cccccccCCccHHHHHhcchhHHHHHHHHcCCCCc-ccccCCCeeEEeee
Confidence            7888888888888888888888866     56666667788888888888888888888888855 78888888888888


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhh----hccCCCchHHHHHHhcCCHHHHHHHHh
Q 046373          160 EGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADI----ADKDRKMTALHLAAGQGHARTVETILF  233 (364)
Q Consensus       160 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~----~~~~~~~t~L~~a~~~~~~~~~~~Ll~  233 (364)
                      -.|+.+++++|++.|+|+|.++..|.|+||.++....++..+.+...    ..+..|.|||..|+..|+.++|++|+.
T Consensus       159 ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  159 YKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             ccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            88888888888888888888888888888888877555555444332    233568888888888888888888884

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=2e-33  Score=254.16  Aligned_cols=109  Identities=14%  Similarity=0.032  Sum_probs=94.5

Q ss_pred             CchHHHHHHhcCCHHHHHHHHhcCCcccccccCCC--CcHHHHHHHcCCHH---HHHHHHhCcccccccccCCCCCCcHH
Q 046373          212 KMTALHLAAGQGHARTVETILFLDPKCYELVDHRG--WNFLHYAMVSFKLH---ELKILLKNPLARSLIYEGDNNGNTPL  286 (364)
Q Consensus       212 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g--~t~l~~a~~~~~~~---~~~~ll~~~~~~~~i~~~d~~g~t~L  286 (364)
                      ...+++.|+..|+.+++++|+++|++ ++..|..|  .||||.|......+   +++.++++   |+++|.+|..|.|||
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~---GADIN~kD~~G~TPL  414 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY---IDDINKIDKHGRSIL  414 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc---CCccccccccCcchH
Confidence            45678899999999999999999999 57777764  69999988776643   46777777   899999999999999


Q ss_pred             HHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhhh
Q 046373          287 HVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIY  326 (364)
Q Consensus       287 ~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~  326 (364)
                      |+|+..++  ...+.+|+++|++++.+|..|+||+++|..
T Consensus       415 h~Aa~~~n--~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        415 YYCIESHS--VSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHHcCC--HHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            99999999  666778889999999999999999999964

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=6.7e-35  Score=276.57  Aligned_cols=301  Identities=24%  Similarity=0.241  Sum_probs=255.1

Q ss_pred             CChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHH
Q 046373            6 IYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHL   85 (364)
Q Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~   85 (364)
                      ..+++|.+++.+..++..++++.+ .........|.+|+|.|  +++|..++++.+++.    +.+.+..+..|.||||.
T Consensus       341 g~t~lHlaa~~~~~~~~~~l~~~~-~~~~~a~~k~~~pl~la--~~~g~~~~v~Lll~~----ga~~~~~gk~gvTplh~  413 (1143)
T KOG4177|consen  341 GYTPLHLAAKEGQVEVAGALLEHG-AQRRQAEEKGFTPLHLA--VKSGRVSVVELLLEA----GADPNSAGKNGVTPLHV  413 (1143)
T ss_pred             CcccccHhhhhhhHHHHHHhhccc-cccCcccccCCcchhhh--cccCchhHHHhhhhc----cCCcccCCCCCcceeee
Confidence            457888888888888777777776 33445555888999999  899999998888886    77788888889999999


Q ss_pred             HHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCH
Q 046373           86 AAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHG-NVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYS  164 (364)
Q Consensus        86 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~-~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~  164 (364)
                      |+..++..+++.+++.++.     .+.++..|.||+|+|+..| ..+....+.+.+.+.+ .....|.||||.|+..|+.
T Consensus       414 aa~~~~~~~v~l~l~~gA~-----~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n-~~s~~G~T~Lhlaaq~Gh~  487 (1143)
T KOG4177|consen  414 AAHYGNPRVVKLLLKRGAS-----PNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPN-AVSKQGFTPLHLAAQEGHT  487 (1143)
T ss_pred             hhhccCcceEEEEeccCCC-----hhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcc-hhccccCcchhhhhccCCc
Confidence            9999999999999988876     5777888999999999998 7888888888888866 6667799999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhh-----hhccCCCchHHHHHHhcCCHHHHHHHHhcCCccc
Q 046373          165 EMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAAD-----IADKDRKMTALHLAAGQGHARTVETILFLDPKCY  239 (364)
Q Consensus       165 ~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~-----~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~  239 (364)
                      ++++.|++.++..+.....+-+++|.+..............     ......+.||||.|+.+|+..+|++|+++|++ +
T Consensus       488 ~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd-v  566 (1143)
T KOG4177|consen  488 EVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD-V  566 (1143)
T ss_pred             hHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcc-c
Confidence            99999999998888888889999999888744433332221     12335788999999999999999999999999 5


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCc-----ccccc
Q 046373          240 ELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGN-----YGAVN  314 (364)
Q Consensus       240 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~-----~~~~n  314 (364)
                      +.++..|+||||.|+..|+.++++.|+++   |+++|..|.+|.|||++|+..|+  +....+++..++.     +...+
T Consensus       567 ~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~---GA~vna~d~~g~TpL~iA~~lg~--~~~~k~l~~~~~~~~~~~~~~e~  641 (1143)
T KOG4177|consen  567 NAKDKLGYTPLHQAAQQGHNDIAELLLKH---GASVNAADLDGFTPLHIAVRLGY--LSVVKLLKVVTATPAATDPVKEN  641 (1143)
T ss_pred             cccCCCCCChhhHHHHcChHHHHHHHHHc---CCCCCcccccCcchhHHHHHhcc--cchhhHHHhccCccccccchhhh
Confidence            88999999999999999999999999999   99999999999999999999999  6666666677777     77889


Q ss_pred             cCCCchhHHhh
Q 046373          315 KQNVSVTDVLI  325 (364)
Q Consensus       315 ~~g~t~l~~a~  325 (364)
                      ..|.+|.+++.
T Consensus       642 ~~g~~p~~v~e  652 (1143)
T KOG4177|consen  642 RKGAVPEDVAE  652 (1143)
T ss_pred             hcccChhhHHH
Confidence            99999999993

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=8.1e-34  Score=249.44  Aligned_cols=210  Identities=24%  Similarity=0.238  Sum_probs=189.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHH-hhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHH
Q 046373           79 GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYM  157 (364)
Q Consensus        79 g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~  157 (364)
                      ..+.++.|++.|..+.|+.|++. +..     ++..|.+|.|+||+|+.+++.+++++|+++|++++..-...+.||||+
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~-----v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHW  118 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGES-----VNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHW  118 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcC-----CCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchH
Confidence            45788999999999999999998 654     788899999999999999999999999999999987766889999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCc
Q 046373          158 AAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPK  237 (364)
Q Consensus       158 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~  237 (364)
                      |+++|+..+|.+|+++|++++.+|.                            .|.+|||.|+..|+.-++-+|+.++.+
T Consensus       119 Aar~G~~~vv~lLlqhGAdpt~~D~----------------------------~G~~~lHla~~~~~~~~vayll~~~~d  170 (600)
T KOG0509|consen  119 AARNGHISVVDLLLQHGADPTLKDK----------------------------QGLTPLHLAAQFGHTALVAYLLSKGAD  170 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCCCceecC----------------------------CCCcHHHHHHHhCchHHHHHHHHhccc
Confidence            9999999999999999999988777                            566777788888999999999999988


Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCC-CCCCcHHHHHHhcCCcceeehhhhcccCCcccccccC
Q 046373          238 CYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGD-NNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQ  316 (364)
Q Consensus       238 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d-~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~  316 (364)
                       ++.+|.+|+||||+|+..|....+..|++.   ++.++..| ..|+||||+|+..|+....+  ++.+.|++.+.+|.+
T Consensus       171 -~d~~D~~grTpLmwAaykg~~~~v~~LL~f---~a~~~~~d~~~g~TpLHwa~~~gN~~~v~--Ll~~g~~~~d~~~~~  244 (600)
T KOG0509|consen  171 -IDLRDNNGRTPLMWAAYKGFALFVRRLLKF---GASLLLTDDNHGNTPLHWAVVGGNLTAVK--LLLEGGADLDKTNTN  244 (600)
T ss_pred             -CCCcCCCCCCHHHHHHHhcccHHHHHHHHh---cccccccccccCCchHHHHHhcCCcceEe--hhhhcCCcccccccC
Confidence             699999999999999999998878889987   88888888 89999999999999955555  777999999999999


Q ss_pred             CCchhHHhhhc
Q 046373          317 NVSVTDVLIYG  327 (364)
Q Consensus       317 g~t~l~~a~~~  327 (364)
                      |+||+++|...
T Consensus       245 g~tp~~LA~~~  255 (600)
T KOG0509|consen  245 GKTPFDLAQER  255 (600)
T ss_pred             CCCHHHHHHHh
Confidence            99999999655

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.1e-32  Score=249.12  Aligned_cols=287  Identities=16%  Similarity=0.164  Sum_probs=219.3

Q ss_pred             HHhhhccCCh-hHHHhhhhccCCchHHHHHHHHHh---cCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcC--CHH
Q 046373           20 ETFKRNTTSD-EIESLLTAQTKNTILHINIISQKR---KNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFG--HSN   93 (364)
Q Consensus        20 ~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~--~~~   93 (364)
                      ..++..++.- +++ ..+|..|.||||+|  +..+   +.+++++|+++    |++++..|..|+||||+|+..+  +.+
T Consensus        21 ~~~~~~~~~~~~in-~~kd~~G~TaLh~A--~~~~~~~~~eivklLLs~----GAdin~kD~~G~TPLh~Aa~~~~~~~e   93 (672)
T PHA02730         21 KKIKLEIETCHNLS-KHIDRRGNNALHCY--VSNKCDTDIKIVRLLLSR----GVERLCRNNEGLTPLGVYSKRKYVKSQ   93 (672)
T ss_pred             HHHHHHHHHhcchh-hhcCCCCCcHHHHH--HHcCCcCcHHHHHHHHhC----CCCCcccCCCCCChHHHHHHcCCCcHH
Confidence            3455555553 232 25666899999999  9887   48999999987    9999999999999999999977  799


Q ss_pred             HHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHH--cCCHHHHHHHHh-cCCCCCCCCC----cCCchHHHHHHhcCCHHH
Q 046373           94 IVSFLIERAKLAAWQMMRMTNNEKNTALHEAVC--HGNVQVVKILTK-QDPDYPYSEN----KYGKTSLYMAAEGRYSEM  166 (364)
Q Consensus        94 ~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~--~~~~e~v~~Ll~-~~~~~~~~~~----~~~~t~l~~A~~~~~~~~  166 (364)
                      +|++|++.|+..   ..+..+..+.+||+.++.  +++.+++++|++ .+.+.....+    ..|.+|++++...++.++
T Consensus        94 Iv~~Ll~~~~~~---~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eI  170 (672)
T PHA02730         94 IVHLLISSYSNA---SNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEV  170 (672)
T ss_pred             HHHHHHhcCCCC---CcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHH
Confidence            999999997541   134466678999999988  889999999997 4455442222    368999999999999999


Q ss_pred             HHHHHHcCCCCC-------CCCCCCC-ChHHHHHHh-------------hhhhcchhhhhhhccCCCchHHHH--HHhcC
Q 046373          167 VIELLENCTSVS-------HEGPNGK-TALHAAAMH-------------FYFENDQTAADIADKDRKMTALHL--AAGQG  223 (364)
Q Consensus       167 v~~Ll~~~~~~~-------~~~~~~~-~~l~~a~~~-------------~~~~~~~~~~~~~~~~~~~t~L~~--a~~~~  223 (364)
                      |++|+++|++++       ..+..+. |.|+++...             .++..+...  ...+..|.||||.  +...|
T Consensus       171 vklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI--N~kd~~G~TpLh~~~~~~~~  248 (672)
T PHA02730        171 LLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI--HGRDEGGSLPIQYYWSCSTI  248 (672)
T ss_pred             HHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCcc
Confidence            999999999985       1333344 556644433             344443222  2234589999984  56677


Q ss_pred             CHHHHHHHHh--------------------------------cCCccccc--------------------ccCCCCc---
Q 046373          224 HARTVETILF--------------------------------LDPKCYEL--------------------VDHRGWN---  248 (364)
Q Consensus       224 ~~~~~~~Ll~--------------------------------~~~~~~~~--------------------~d~~g~t---  248 (364)
                      +.|++++|++                                +|.|. ..                    .+..|.+   
T Consensus       249 ~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~  327 (672)
T PHA02730        249 DIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYI  327 (672)
T ss_pred             cHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcch-HHHHHHhhccCcchhhhhccccccccccchhH
Confidence            8999999999                                56663 23                    4566655   


Q ss_pred             ------------------HHHHHHHcC---CHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCC--cceeehhhhcc
Q 046373          249 ------------------FLHYAMVSF---KLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRP--KEFFKIKVRYD  305 (364)
Q Consensus       249 ------------------~l~~a~~~~---~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~--~~~~~~~ll~~  305 (364)
                                        .||.-..++   +.++++.|+++   |+++|.. ..|.||||+|+..++  .+...+.+|+.
T Consensus       328 ~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~---GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs  403 (672)
T PHA02730        328 IDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDN---GATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVE  403 (672)
T ss_pred             HHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHC---CCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHH
Confidence                              777777765   58999999999   9999985 789999999998875  34667777778


Q ss_pred             cCC--cccccccCCCchhHH
Q 046373          306 AGG--NYGAVNKQNVSVTDV  323 (364)
Q Consensus       306 ~~~--~~~~~n~~g~t~l~~  323 (364)
                      +|+  +++.+|..|+||||.
T Consensus       404 ~Ga~~dIN~kd~~G~T~Lh~  423 (672)
T PHA02730        404 NNGHMAINHVSNNGRLCMYG  423 (672)
T ss_pred             cCCCccccccccCCCchHhH
Confidence            887  688999999999985

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-32  Score=232.30  Aligned_cols=177  Identities=23%  Similarity=0.216  Sum_probs=126.0

Q ss_pred             CCChhHHHHHhcCChHHhhhccCChhHHHh--------hhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccC
Q 046373            5 SIYPNFFNAAAAGDAETFKRNTTSDEIESL--------LTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVN   76 (364)
Q Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~--------~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~   76 (364)
                      +..+||..|+++|+.++|++|+++...++.        -...+|-+||..|  +..|+.++++.|++.    ++++|...
T Consensus        41 ~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaA--saAGHl~vVk~L~~~----ga~VN~tT  114 (615)
T KOG0508|consen   41 NGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAA--SAAGHLEVVKLLLRR----GASVNDTT  114 (615)
T ss_pred             CCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHH--hccCcHHHHHHHHHh----cCcccccc
Confidence            344677777777888888777774212111        2223566677777  777777777777776    67777777


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHH
Q 046373           77 AKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLY  156 (364)
Q Consensus        77 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~  156 (364)
                      ..+.|||-.||.-|++++|++|++++++     +++.++.|.|.||+||..|+.+++++|++.|++++ ..+..|.|+||
T Consensus       115 ~TNStPLraACfDG~leivKyLvE~gad-----~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn-~ks~kGNTALH  188 (615)
T KOG0508|consen  115 RTNSTPLRAACFDGHLEIVKYLVEHGAD-----PEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN-AKSYKGNTALH  188 (615)
T ss_pred             ccCCccHHHHHhcchhHHHHHHHHcCCC-----CcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc-hhcccCchHHH
Confidence            7777777777777777777777777766     67777777777777777777777777777777766 66667777777


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHh
Q 046373          157 MAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH  194 (364)
Q Consensus       157 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~  194 (364)
                      .|+..|+.+++++|+.+|+.+..... |.|||-.|...
T Consensus       189 ~caEsG~vdivq~Ll~~ga~i~~d~~-GmtPL~~Aa~t  225 (615)
T KOG0508|consen  189 DCAESGSVDIVQLLLKHGAKIDVDGH-GMTPLLLAAVT  225 (615)
T ss_pred             hhhhcccHHHHHHHHhCCceeeecCC-CCchHHHHhhh
Confidence            77777777777777777766654433 77777776654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1.3e-31  Score=235.56  Aligned_cols=209  Identities=25%  Similarity=0.254  Sum_probs=178.7

Q ss_pred             CchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCC-CCCCc
Q 046373           41 NTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTN-NEKNT  119 (364)
Q Consensus        41 ~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-~~g~t  119 (364)
                      ..-++.|  ++.|..+.++.+++.   .+..++..|.+|.|+||+|+.+++.+++++|++++++     ++... .-+.|
T Consensus        45 ~~~~v~A--~q~G~l~~v~~lve~---~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gad-----vn~~gG~l~st  114 (600)
T KOG0509|consen   45 LDDIVKA--TQYGELETVKELVES---EGESVNNPDREGVTLLHWAAINNRLDVARYLISHGAD-----VNAIGGVLGST  114 (600)
T ss_pred             hhhhhhH--hhcchHHHHHHHHhh---cCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCC-----ccccCCCCCCC
Confidence            4457788  888888888888873   2677888899999999999999999999999999987     56555 67889


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhc
Q 046373          120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEN  199 (364)
Q Consensus       120 ~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~  199 (364)
                      |||+|+++|+..++.+|+++|++.. ..|.+|.+|+|.|++.++.-.+-+|+..|++++.+|.                 
T Consensus       115 PLHWAar~G~~~vv~lLlqhGAdpt-~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~-----------------  176 (600)
T KOG0509|consen  115 PLHWAARNGHISVVDLLLQHGADPT-LKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDN-----------------  176 (600)
T ss_pred             cchHHHHcCcHHHHHHHHHcCCCCc-eecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCC-----------------
Confidence            9999999999999999999999965 8899999999999999999999999999999887776                 


Q ss_pred             chhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCccccccc-CCCCcHHHHHHHcCCHHHHHHHHhCcccccccccC
Q 046373          200 DQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVD-HRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEG  278 (364)
Q Consensus       200 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~  278 (364)
                                 .|+||||+|+.+|....+..|++-++.. ..+| ..|.||||+|+..|+..++..+++-   +.+.+.+
T Consensus       177 -----------~grTpLmwAaykg~~~~v~~LL~f~a~~-~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g---~~~~d~~  241 (600)
T KOG0509|consen  177 -----------NGRTPLMWAAYKGFALFVRRLLKFGASL-LLTDDNHGNTPLHWAVVGGNLTAVKLLLEG---GADLDKT  241 (600)
T ss_pred             -----------CCCCHHHHHHHhcccHHHHHHHHhcccc-cccccccCCchHHHHHhcCCcceEehhhhc---CCccccc
Confidence                       5667777777788877788899988884 5555 8899999999999999999955554   7888888


Q ss_pred             CCCCCcHHHHHHhc
Q 046373          279 DNNGNTPLHVLAAI  292 (364)
Q Consensus       279 d~~g~t~L~~A~~~  292 (364)
                      |.+|.||+.+|.+.
T Consensus       242 ~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  242 NTNGKTPFDLAQER  255 (600)
T ss_pred             ccCCCCHHHHHHHh
Confidence            99999999999877

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.8e-29  Score=203.90  Aligned_cols=182  Identities=15%  Similarity=0.109  Sum_probs=136.0

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCCCCCCcCC
Q 046373           74 QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHG--NVQVVKILTKQDPDYPYSENKYG  151 (364)
Q Consensus        74 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~--~~e~v~~Ll~~~~~~~~~~~~~~  151 (364)
                      .....+.||||+|+..|+.++|+.|++..        +..+..|.||||+|+..+  +.+++++|+++|++++...+..|
T Consensus        16 ~~~~~~~~pL~~A~~~~~~~~vk~Li~~~--------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g   87 (209)
T PHA02859         16 YLFYRYCNPLFYYVEKDDIEGVKKWIKFV--------NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNN   87 (209)
T ss_pred             HHhhccCcHHHHHHHhCcHHHHHHHHHhh--------hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCC
Confidence            33456688888888888888888888642        446778888888888754  78888888888888764434578


Q ss_pred             chHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHH
Q 046373          152 KTSLYMAAEG---RYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTV  228 (364)
Q Consensus       152 ~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~  228 (364)
                      .||||+|+..   ++.+++++|+++|++++.++..|.||||.|+.                          ...++.+++
T Consensus        88 ~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~--------------------------~~~~~~~iv  141 (209)
T PHA02859         88 LSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMC--------------------------NFNVRINVI  141 (209)
T ss_pred             CCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH--------------------------hccCCHHHH
Confidence            8888887653   46888888888888888777655555554431                          113577888


Q ss_pred             HHHHhcCCcccccccCCCCcHHHH-HHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcC
Q 046373          229 ETILFLDPKCYELVDHRGWNFLHY-AMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIR  293 (364)
Q Consensus       229 ~~Ll~~~~~~~~~~d~~g~t~l~~-a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~  293 (364)
                      ++|+++|++ ++.+|..|.||||. |+..++.+++++|+++   |++++.+|..|.||||+|..++
T Consensus       142 ~~Li~~gad-in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~---Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        142 KLLIDSGVS-FLNKDFDNNNILYSYILFHSDKKIFDFLTSL---GIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHcCCC-cccccCCCCcHHHHHHHhcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHhhhh
Confidence            888888887 46778888888885 4566778888888887   7888888888888888887654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.3e-29  Score=229.56  Aligned_cols=286  Identities=13%  Similarity=0.081  Sum_probs=214.3

Q ss_pred             ChhH-HHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHH-HhcCCChHHHHHHHhcCCc--------------
Q 046373            7 YPNF-FNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQ-KRKNGSTKFIGEMLKKCPS--------------   70 (364)
Q Consensus         7 ~~~l-~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~~~l~~~l~~~~~--------------   70 (364)
                      ..++ ..|...|++|+|++|+++| ++....+..+.+|+|+|  +. .++.|++++|++.    |+              
T Consensus        72 ~~~~~~~~s~n~~lElvk~LI~~G-AdvN~~~n~~~~~l~ya--~~~~~~~eivk~Ll~~----Gad~~~~~~~g~~~~~  144 (631)
T PHA02792         72 FDIFEYLCSDNIDIELLKLLISKG-LEINSIKNGINIVEKYA--TTSNPNVDVFKLLLDK----GIPTCSNIQYGYKIII  144 (631)
T ss_pred             ccHHHHHHHhcccHHHHHHHHHcC-CCcccccCCCCcceeEe--ecCCCChHHHHHHHHC----CCCcccccccCcchhh
Confidence            3455 4578889999999999998 88877776788999999  76 5999999999986    22              


Q ss_pred             ----------------------cccccCCCCCcHHHHHHHcC-------CHHHHHHHHHHhhHHHhHhhhcCCCCCCcHH
Q 046373           71 ----------------------LLLQVNAKGDTPLHLAAKFG-------HSNIVSFLIERAKLAAWQMMRMTNNEKNTAL  121 (364)
Q Consensus        71 ----------------------~~~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l  121 (364)
                                            .++..|..|.||||+|+.++       +.++++.|+++|+.     ++..|..|.|||
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~-----~~~~d~~g~t~l  219 (631)
T PHA02792        145 EQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE-----MRYYTYREHTTL  219 (631)
T ss_pred             hhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC-----cCccCCCCChHH
Confidence                                  23456677999999999999       89999999999977     677888999999


Q ss_pred             HHHHHcC--CHHHHHHHHhcCCCCCC------------------CCCc-------CC-----------------------
Q 046373          122 HEAVCHG--NVQVVKILTKQDPDYPY------------------SENK-------YG-----------------------  151 (364)
Q Consensus       122 ~~a~~~~--~~e~v~~Ll~~~~~~~~------------------~~~~-------~~-----------------------  151 (364)
                      |+|+.+.  +.|++++|++..-+...                  ..|.       .|                       
T Consensus       220 ~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~  299 (631)
T PHA02792        220 YYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSIL  299 (631)
T ss_pred             HHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHH
Confidence            9999999  88999999874221000                  0000       01                       


Q ss_pred             -------chHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCChHHHHHHh-------hhhhcchhhhhhhccCCCchH
Q 046373          152 -------KTSLYMAAEGR--YSEMVIELLENCTSVSHEGPNGKTALHAAAMH-------FYFENDQTAADIADKDRKMTA  215 (364)
Q Consensus       152 -------~t~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~-------~~~~~~~~~~~~~~~~~~~t~  215 (364)
                             +-.||....++  +.+++++|+++|++..  .......++.|+..       .+++.+...........+.||
T Consensus       300 ~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~Tp  377 (631)
T PHA02792        300 KRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMP  377 (631)
T ss_pred             HHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhH
Confidence                   12244444555  6889999999999875  22244567777655       444444333222222235799


Q ss_pred             HHHHHhcCCH---HHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHh-
Q 046373          216 LHLAAGQGHA---RTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA-  291 (364)
Q Consensus       216 L~~a~~~~~~---~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~-  291 (364)
                      ||.|+.....   +++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++   |++++.+|..|.||||+|+. 
T Consensus       378 Lh~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~---GADIN~kD~~G~TpL~~A~~~  453 (631)
T PHA02792        378 LFPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDN---GADINITTKYGSTCIGICVIL  453 (631)
T ss_pred             HHHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHH
Confidence            9998876654   468889999999 688999999999999999999999999998   99999999999999999976 


Q ss_pred             --cCCcc-----eeehhhhcccCCcc
Q 046373          292 --IRPKE-----FFKIKVRYDAGGNY  310 (364)
Q Consensus       292 --~~~~~-----~~~~~ll~~~~~~~  310 (364)
                        .+..+     ...+.+++++|.++
T Consensus       454 ~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        454 AHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             HhcccHHHHHHHHHHHHHHHhcCCCh
Confidence              22211     23466667888764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=201.11  Aligned_cols=177  Identities=18%  Similarity=0.174  Sum_probs=149.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCChHHHH
Q 046373          114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGR--YSEMVIELLENCTSVSHEGPNGKTALHAA  191 (364)
Q Consensus       114 ~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a  191 (364)
                      .+.+.||||+|+..|+.++++.|++..    ...+..|.||||+|+..+  +.+++++|+++|++++..+.         
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~---------   84 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTR---------   84 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCC---------
Confidence            456799999999999999999999763    246778999999999854  89999999999999987653         


Q ss_pred             HHhhhhhcchhhhhhhccCCCchHHHHHHh---cCCHHHHHHHHhcCCcccccccCCCCcHHHHHHH--cCCHHHHHHHH
Q 046373          192 AMHFYFENDQTAADIADKDRKMTALHLAAG---QGHARTVETILFLDPKCYELVDHRGWNFLHYAMV--SFKLHELKILL  266 (364)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~---~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~--~~~~~~~~~ll  266 (364)
                                        ..|.||||+|+.   .++.+++++|+++|++ ++.+|..|.||||+|+.  .++.+++++|+
T Consensus        85 ------------------~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li  145 (209)
T PHA02859         85 ------------------DNNLSALHHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLI  145 (209)
T ss_pred             ------------------CCCCCHHHHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHH
Confidence                              134555555543   2478999999999999 58899999999999986  46899999999


Q ss_pred             hCcccccccccCCCCCCcHHHH-HHhcCCcceeehhhhcccCCcccccccCCCchhHHhhhc
Q 046373          267 KNPLARSLIYEGDNNGNTPLHV-LAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYG  327 (364)
Q Consensus       267 ~~~~~~~~i~~~d~~g~t~L~~-A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~~  327 (364)
                      +.   |++++.+|..|.||||. |+..++  ...+.+|+++|++++.+|..|+||+++|.++
T Consensus       146 ~~---gadin~~d~~g~t~Lh~~a~~~~~--~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        146 DS---GVSFLNKDFDNNNILYSYILFHSD--KKIFDFLTSLGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             Hc---CCCcccccCCCCcHHHHHHHhcCC--HHHHHHHHHcCCCCCCCCCCCCCHHHHHhhh
Confidence            98   99999999999999996 555666  6666788899999999999999999999754

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=214.77  Aligned_cols=226  Identities=12%  Similarity=0.049  Sum_probs=185.8

Q ss_pred             CChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHH-hHhhhcCCCCCCcHHHHHHH--cCCHHH
Q 046373           56 GSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAA-WQMMRMTNNEKNTALHEAVC--HGNVQV  132 (364)
Q Consensus        56 ~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~~~g~t~l~~a~~--~~~~e~  132 (364)
                      +-+..|.+.+...+++++..+.+|     +|+..+..+++++|+.++++.. ...+-..+.+++|+||+++.  .|+.++
T Consensus        59 ~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~ei  133 (437)
T PHA02795         59 DPVDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDI  133 (437)
T ss_pred             CHHHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHH
Confidence            345555565555588888888777     8999999999999999998732 11111577789999999999  899999


Q ss_pred             HHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCC
Q 046373          133 VKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRK  212 (364)
Q Consensus       133 v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~  212 (364)
                      +++|+++|++++.   ..+.||+|.|+..++.+++++|+++|++...   .+.++++.+                   .+
T Consensus       134 V~~LI~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n---~~~~~l~~~-------------------~~  188 (437)
T PHA02795        134 VDFMVDHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDEN---DVKLDLYKI-------------------IQ  188 (437)
T ss_pred             HHHHHHCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccc---cccchhhhh-------------------hc
Confidence            9999999999863   3458999999999999999999999985421   223343321                   36


Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhc
Q 046373          213 MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAI  292 (364)
Q Consensus       213 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~  292 (364)
                      .+++|.|+..++.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++   |++++.+|..|.||||+|+..
T Consensus       189 ~t~l~~a~~~~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~---GAdIN~~d~~G~TpLh~Aa~~  264 (437)
T PHA02795        189 YTRGFLVDEPTVLEIYKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLLEN---GANVNAVMSNGYTCLDVAVDR  264 (437)
T ss_pred             cchhHHHHhcCHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHc
Confidence            6999999999999999999999999 688999999999999999999999999998   999999999999999999999


Q ss_pred             CCc------ceeehhhhcccCCccccccc
Q 046373          293 RPK------EFFKIKVRYDAGGNYGAVNK  315 (364)
Q Consensus       293 ~~~------~~~~~~ll~~~~~~~~~~n~  315 (364)
                      |+.      ....+.+|+++|++++....
T Consensus       265 g~~~~~~~~~~eIvelLL~~gadI~~~~~  293 (437)
T PHA02795        265 GSVIARRETHLKILEILLREPLSIDCIKL  293 (437)
T ss_pred             CCcccccccHHHHHHHHHhCCCCCCchhH
Confidence            952      13566778899998755443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.2e-27  Score=207.63  Aligned_cols=188  Identities=15%  Similarity=0.060  Sum_probs=149.6

Q ss_pred             HHHHHHHhcCCChHHHHHHHhcCCcccc------ccCCCCCcHHHHHHH--cCCHHHHHHHHHHhhHHHhHhhhcCCCCC
Q 046373           46 INIISQKRKNGSTKFIGEMLKKCPSLLL------QVNAKGDTPLHLAAK--FGHSNIVSFLIERAKLAAWQMMRMTNNEK  117 (364)
Q Consensus        46 ~A~~~~~~~~~~~~~l~~~l~~~~~~~~------~~~~~g~t~L~~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g  117 (364)
                      +|  +..+..|++++|+.+    +++++      ..+..++|+||+++.  .|+.++|++|+++|++     ++.  ..+
T Consensus        83 ~~--~~~~~k~~~~~l~s~----~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GAD-----In~--~~~  149 (437)
T PHA02795         83 LF--AYITYKDIISALVSK----NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAV-----IYK--IEC  149 (437)
T ss_pred             HH--hhcchHHHHHHHHhc----ccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCC-----CCC--CCC
Confidence            77  888888999998886    66656      667778899999998  7889999999999976     443  345


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCC-----CcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHH
Q 046373          118 NTALHEAVCHGNVQVVKILTKQDPDYPYSE-----NKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA  192 (364)
Q Consensus       118 ~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~-----~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~  192 (364)
                      .||+|.|+..++.+++++|+++|++.....     +..+.|++|.|...++.+++++|+++|++++.++.          
T Consensus       150 ~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~----------  219 (437)
T PHA02795        150 LNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDA----------  219 (437)
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCC----------
Confidence            789999999999999999999887433222     12467888888888889999999999988876655          


Q ss_pred             HhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCC--------HHHHHH
Q 046373          193 MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFK--------LHELKI  264 (364)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~--------~~~~~~  264 (364)
                                        .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+        .++++.
T Consensus       220 ------------------~G~TpLh~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvel  280 (437)
T PHA02795        220 ------------------GGRTLLYRAIYAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEI  280 (437)
T ss_pred             ------------------CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHH
Confidence                              566777788888888999999998888 57888889999999988874        588888


Q ss_pred             HHhCcccccccccC
Q 046373          265 LLKNPLARSLIYEG  278 (364)
Q Consensus       265 ll~~~~~~~~i~~~  278 (364)
                      |+++   +++++..
T Consensus       281 LL~~---gadI~~~  291 (437)
T PHA02795        281 LLRE---PLSIDCI  291 (437)
T ss_pred             HHhC---CCCCCch
Confidence            8887   6666554

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=1.1e-27  Score=183.36  Aligned_cols=240  Identities=18%  Similarity=0.155  Sum_probs=205.4

Q ss_pred             hhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCC
Q 046373           35 LTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTN  114 (364)
Q Consensus        35 ~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  114 (364)
                      ..+..|.+.+-.+  .+.++.++......   -++..+...+.+|+++++.|+-+++...+...+.++..     .+..+
T Consensus        57 ~~~~lge~~~~~~--~~s~nsd~~v~s~~---~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~r-----gnevs  126 (296)
T KOG0502|consen   57 LRNALGESLLTVA--VRSGNSDVAVQSAQ---LDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGAR-----GNEVS  126 (296)
T ss_pred             HHHhcCCcccchh--hhcCCcHHHHHhhc---cCCCCCCCCCchhhhhhhhcCCCCCcceeeeeeccccc-----CCccc
Confidence            4555888888888  88888888776655   34566677788899999999999999999999998876     57778


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHh
Q 046373          115 NEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH  194 (364)
Q Consensus       115 ~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~  194 (364)
                      ..+.+|+.+++...+.+.+..+.+.-   .+..|+.|.|||.||+..|++.+|++|++.|+++....+            
T Consensus       127 ~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk------------  191 (296)
T KOG0502|consen  127 LMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGK------------  191 (296)
T ss_pred             cccCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhh------------
Confidence            89999999999888877777666543   337889999999999999999999999999999864332            


Q ss_pred             hhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccc
Q 046373          195 FYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSL  274 (364)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  274 (364)
                                      ...++|.+|++.|..++|+.|+..+.+ +|..|.+|-|||-||+..++.++++.|+..   |++
T Consensus       192 ----------------~resALsLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~s---GAd  251 (296)
T KOG0502|consen  192 ----------------YRESALSLATRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLNS---GAD  251 (296)
T ss_pred             ----------------hhhhhHhHHhcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHhc---CCC
Confidence                            567899999999999999999999999 689999999999999999999999999998   999


Q ss_pred             cccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhH
Q 046373          275 IYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTD  322 (364)
Q Consensus       275 i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~  322 (364)
                      ++..+..|.+++.+|+..|+  . ++...+++.+...-+|..-++|+|
T Consensus       252 ~t~e~dsGy~~mdlAValGy--r-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  252 VTQEDDSGYWIMDLAVALGY--R-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             cccccccCCcHHHHHHHhhh--H-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            99999999999999999998  3 566666777776677777777764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.94  E-value=9.7e-27  Score=207.79  Aligned_cols=251  Identities=27%  Similarity=0.326  Sum_probs=195.1

Q ss_pred             ChhHHHHHhcCChHHhhhccCChh------------HHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccc
Q 046373            7 YPNFFNAAAAGDAETFKRNTTSDE------------IESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQ   74 (364)
Q Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~   74 (364)
                      ...+..|++.||++.+..+++...            .+....|.+|.|.||.|  +..|+.++++.|++.    ...++.
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha--~Lng~~~is~llle~----ea~ldl   77 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHA--VLNGQNQISKLLLDY----EALLDL   77 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHH--HhcCchHHHHHHhcc----hhhhhh
Confidence            456889999999999999999721            22346677888888888  888888888888875    566666


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchH
Q 046373           75 VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTS  154 (364)
Q Consensus        75 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~  154 (364)
                      .|..|.+|||+|+..|+.++++.++.++..     .+.....|.||||.|++.|+.+++.+|++++++ +...+.++.|+
T Consensus        78 ~d~kg~~plhlaaw~g~~e~vkmll~q~d~-----~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~  151 (854)
T KOG0507|consen   78 CDTKGILPLHLAAWNGNLEIVKMLLLQTDI-----LNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKETV  151 (854)
T ss_pred             hhccCcceEEehhhcCcchHHHHHHhcccC-----CCcccccCcCccchhhhhcchHHHHHHHhcCCC-ccccCcccccH
Confidence            777888888888888888888888887743     677778888888888888888888888888887 44777778888


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhc
Q 046373          155 LYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFL  234 (364)
Q Consensus       155 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~  234 (364)
                      +..|++-|..++++.|++.........                 .   .........+.+|||.|+++|+.++++.|+..
T Consensus       152 ldlA~qfgr~~Vvq~ll~~~~~~~~~~-----------------~---~~~~~~~~~~~~plHlaakngh~~~~~~ll~a  211 (854)
T KOG0507|consen  152 LDLASRFGRAEVVQMLLQKKFPVQSSL-----------------R---VGDIKRPFPAIYPLHLAAKNGHVECMQALLEA  211 (854)
T ss_pred             HHHHHHhhhhHHHHHHhhhccchhhcc-----------------c---CCCCCCCCCCcCCcchhhhcchHHHHHHHHhc
Confidence            888888888888888887632221100                 0   01222334677889999999999999999999


Q ss_pred             CCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCC
Q 046373          235 DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRP  294 (364)
Q Consensus       235 ~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~  294 (364)
                      |.+ +|.....| |+||.|+.+|..+++..|++.   |.+.+.++.+|.|+|.+....-.
T Consensus       212 g~d-in~~t~~g-talheaalcgk~evvr~ll~~---gin~h~~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  212 GFD-INYTTEDG-TALHEAALCGKAEVVRFLLEI---GINTHIKNQHGQTALDIIIDLQE  266 (854)
T ss_pred             CCC-cccccccc-hhhhhHhhcCcchhhhHHHhh---ccccccccccchHHHHHHHhcch
Confidence            988 46555555 899999999999999999987   88888889999999988766543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=1.1e-26  Score=177.84  Aligned_cols=233  Identities=20%  Similarity=0.186  Sum_probs=197.2

Q ss_pred             hhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHH
Q 046373            8 PNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAA   87 (364)
Q Consensus         8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~   87 (364)
                      +.+-.+.+.|+-++.+....-.+-.....+.+|+++++.|  +-.++...++..+..    +.-.|+.+..+++|+.+++
T Consensus        64 ~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~--ap~~s~~k~sttltN----~~rgnevs~~p~s~~slsV  137 (296)
T KOG0502|consen   64 SLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVA--APCGSVDKVSTTLTN----GARGNEVSLMPWSPLSLSV  137 (296)
T ss_pred             cccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhc--CCCCCcceeeeeecc----cccCCccccccCChhhHHH
Confidence            3445577777777776655543222335566899999999  999999999888876    6777888999999999999


Q ss_pred             HcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHH
Q 046373           88 KFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMV  167 (364)
Q Consensus        88 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v  167 (364)
                      .+.+.+++..+.++.       ++..|..|.|||.+|+..|++++|++|++.|++.. ...+...++|++|++.|..++|
T Consensus       138 hql~L~~~~~~~~n~-------VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~-~lgk~resALsLAt~ggytdiV  209 (296)
T KOG0502|consen  138 HQLHLDVVDLLVNNK-------VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPD-ALGKYRESALSLATRGGYTDIV  209 (296)
T ss_pred             HHHHHHHHHHHhhcc-------ccCccccCchHhHHHHhcCchHHHHHHHHcCCChh-hhhhhhhhhHhHHhcCChHHHH
Confidence            999999988887765       78999999999999999999999999999999954 6667788999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCC
Q 046373          168 IELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGW  247 (364)
Q Consensus       168 ~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~  247 (364)
                      ++|+..+.++|+.|.                            +|.|||-+|++.++.++++.|+..|++ ++..+..|+
T Consensus       210 ~lLL~r~vdVNvyDw----------------------------NGgTpLlyAvrgnhvkcve~Ll~sGAd-~t~e~dsGy  260 (296)
T KOG0502|consen  210 ELLLTREVDVNVYDW----------------------------NGGTPLLYAVRGNHVKCVESLLNSGAD-VTQEDDSGY  260 (296)
T ss_pred             HHHHhcCCCcceecc----------------------------CCCceeeeeecCChHHHHHHHHhcCCC-cccccccCC
Confidence            999999999998776                            566777788888999999999999999 588999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHH
Q 046373          248 NFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLH  287 (364)
Q Consensus       248 t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~  287 (364)
                      +++..|+..|+. +++.++++   ..+.+.+|+.-.||+|
T Consensus       261 ~~mdlAValGyr-~Vqqvie~---h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  261 WIMDLAVALGYR-IVQQVIEK---HALKLCQDSEKRTPLH  296 (296)
T ss_pred             cHHHHHHHhhhH-HHHHHHHH---HHHHHhhcccCCCCCC
Confidence            999999999987 77888876   6667777777777765

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.93  E-value=4.5e-26  Score=203.56  Aligned_cols=242  Identities=22%  Similarity=0.164  Sum_probs=200.5

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHh---------cCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCC
Q 046373           44 LHINIISQKRKNGSTKFIGEMLK---------KCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTN  114 (364)
Q Consensus        44 L~~A~~~~~~~~~~~~~l~~~l~---------~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  114 (364)
                      |.-|  ++.|+.+.+..+++.-.         ...+..+..|.+|+|.||.|+.+|+.+++++|++..+.     ++..+
T Consensus         7 l~~a--~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~-----ldl~d   79 (854)
T KOG0507|consen    7 LIDA--CKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL-----LDLCD   79 (854)
T ss_pred             HHHh--hhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh-----hhhhh
Confidence            5567  88888998888887521         12345678888999999999999999999999998876     67778


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHh
Q 046373          115 NEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH  194 (364)
Q Consensus       115 ~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~  194 (364)
                      ..|.+|||+|++.|+.|++++++.++.. .+..+..|.||||.|++.|+.+++.+|+.+|+++-.++..           
T Consensus        80 ~kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns-----------  147 (854)
T KOG0507|consen   80 TKGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNS-----------  147 (854)
T ss_pred             ccCcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcc-----------
Confidence            9999999999999999999999999854 4477888999999999999999999999999998766664           


Q ss_pred             hhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcc-------cccccCCCCcHHHHHHHcCCHHHHHHHHh
Q 046373          195 FYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKC-------YELVDHRGWNFLHYAMVSFKLHELKILLK  267 (364)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~-------~~~~d~~g~t~l~~a~~~~~~~~~~~ll~  267 (364)
                                       +.|+|-.|++.|..++++.|+...-+.       -..++..+-+|+|.|+.+|+.++++.|++
T Consensus       148 -----------------~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~  210 (854)
T KOG0507|consen  148 -----------------KETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLE  210 (854)
T ss_pred             -----------------cccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHh
Confidence                             455555666666666666666541000       01245667899999999999999999999


Q ss_pred             CcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhhhc
Q 046373          268 NPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYG  327 (364)
Q Consensus       268 ~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~~  327 (364)
                      .   |.++|.....| |+||.|+.+|.  ..++.+|++.|.+..++|.+|+|+|++..--
T Consensus       211 a---g~din~~t~~g-talheaalcgk--~evvr~ll~~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  211 A---GFDINYTTEDG-TALHEAALCGK--AEVVRFLLEIGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             c---CCCcccccccc-hhhhhHhhcCc--chhhhHHHhhccccccccccchHHHHHHHhc
Confidence            8   99999888776 99999999999  7777788899999999999999999998543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=1.6e-25  Score=216.78  Aligned_cols=256  Identities=16%  Similarity=0.035  Sum_probs=160.5

Q ss_pred             CCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHH-HHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCC
Q 046373           40 KNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLH-LAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKN  118 (364)
Q Consensus        40 g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~  118 (364)
                      +...|+.|  ++.|+.+.++.+++.  ..+.++|..|..|.|||| .|+.+++.++++.|++.+.         .+..|.
T Consensus        17 ~~~~~l~A--~~~g~~~~v~~lL~~--~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~---------~~~~G~   83 (743)
T TIGR00870        17 EEKAFLPA--AERGDLASVYRDLEE--PKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC---------RGAVGD   83 (743)
T ss_pred             HHHHHHHH--HHcCCHHHHHHHhcc--ccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC---------CCCcCh
Confidence            34556666  666666666555542  113445555666666666 5555556666666666552         344566


Q ss_pred             cHHHHHHHcC---CHHHHHHHHhcCCC---------CCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 046373          119 TALHEAVCHG---NVQVVKILTKQDPD---------YPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKT  186 (364)
Q Consensus       119 t~l~~a~~~~---~~e~v~~Ll~~~~~---------~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  186 (364)
                      ||||.|+..+   ...+++.+...+..         ........|.||||+|+..|+.+++++|+++|++++.++.....
T Consensus        84 T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~  163 (743)
T TIGR00870        84 TLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFF  163 (743)
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchh
Confidence            6666665521   12223333332211         01122346899999999999999999999999998865432210


Q ss_pred             hHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCC--------
Q 046373          187 ALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFK--------  258 (364)
Q Consensus       187 ~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~--------  258 (364)
                      .           .   .........|.+|||.|+..|+.+++++|++++++ ++..|..|+||||+|+..+.        
T Consensus       164 ~-----------~---~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~~~~~~~~~~l  228 (743)
T TIGR00870       164 V-----------K---SQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLLHLLVMENEFKAEYEEL  228 (743)
T ss_pred             h-----------c---CCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhhhhhhHHHHHH
Confidence            0           0   00011123689999999999999999999999998 58899999999999999872        


Q ss_pred             -HHHHHHHHhCccccccc----ccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhh
Q 046373          259 -LHELKILLKNPLARSLI----YEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLI  325 (364)
Q Consensus       259 -~~~~~~ll~~~~~~~~i----~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~  325 (364)
                       ..+.+.+++.+....+.    +..|..|.||||+|+..|+.++...++  +.+.........+..+.+.+.
T Consensus       229 ~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL--~~~~~~kk~~a~~~~~~~~~~  298 (743)
T TIGR00870       229 SCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKL--AIKYKQKKFVAWPNGQQLLSL  298 (743)
T ss_pred             HHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHH--HHHHhcceeeccCcchHhHhh
Confidence             23445555543333333    667899999999999999955555444  433333233444455555543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=1.8e-25  Score=216.53  Aligned_cols=253  Identities=19%  Similarity=0.141  Sum_probs=177.5

Q ss_pred             ChhHHHHHhcCChHHhhhccCCh-hHHHhhhhccCCchHH-HHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHH
Q 046373            7 YPNFFNAAAAGDAETFKRNTTSD-EIESLLTAQTKNTILH-INIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLH   84 (364)
Q Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~   84 (364)
                      +..|+.|++.||++.++.+++.+ +.+.+..|..|.|||| .|  +..++.++++.|++.    +.    .+..|.||||
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A--~~~~~~eiv~lLl~~----g~----~~~~G~T~Lh   87 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAA--IENENLELTELLLNL----SC----RGAVGDTLLH   87 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHH--HhcChHHHHHHHHhC----CC----CCCcChHHHH
Confidence            46899999999999999999982 2666677889999999 77  888999999999884    33    5778999999


Q ss_pred             HHHHcCCHH----HHHHHHHHhhHHH-----hHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCC--------
Q 046373           85 LAAKFGHSN----IVSFLIERAKLAA-----WQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSE--------  147 (364)
Q Consensus        85 ~A~~~~~~~----~v~~Ll~~~~~~~-----~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~--------  147 (364)
                      .|+.. ..+    ++..+...+....     ..........|.||||+|+..|+.+++++|+++|++++...        
T Consensus        88 ~A~~~-~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~  166 (743)
T TIGR00870        88 AISLE-YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKS  166 (743)
T ss_pred             HHHhc-cHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcC
Confidence            99873 333    3333333332100     00011123569999999999999999999999999876321        


Q ss_pred             -----CcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhc
Q 046373          148 -----NKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQ  222 (364)
Q Consensus       148 -----~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~  222 (364)
                           ...|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+......            ...+.+      
T Consensus       167 ~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~------------~~~~~l------  228 (743)
T TIGR00870       167 QGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFK------------AEYEEL------  228 (743)
T ss_pred             CCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhh------------HHHHHH------
Confidence                 135899999999999999999999999999988888888887776531000            001111      


Q ss_pred             CCHHHHHHHHhc---CCcc---cccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhc
Q 046373          223 GHARTVETILFL---DPKC---YELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAI  292 (364)
Q Consensus       223 ~~~~~~~~Ll~~---~~~~---~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~  292 (364)
                       ...+.+++++.   ..+.   .+..|.+|.||||+|+..|+.++++.+++.   +............|.+.+...
T Consensus       229 -~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~---~~~~kk~~a~~~~~~~~~~~~  300 (743)
T TIGR00870       229 -SCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI---KYKQKKFVAWPNGQQLLSLYW  300 (743)
T ss_pred             -HHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH---HHhcceeeccCcchHhHhhhc
Confidence             11233334433   3221   144688899999999999999999999985   222222233455566555443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=4.2e-24  Score=208.08  Aligned_cols=168  Identities=22%  Similarity=0.248  Sum_probs=73.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhh
Q 046373          117 KNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFY  196 (364)
Q Consensus       117 g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  196 (364)
                      +.++|+.|+..|+.++++.|++.|.+++ ..|..|.||||+|+..|+.+++++|+++|++++.++.+|.||||.|+....
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~  603 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPD-IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKH  603 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCC
Confidence            3445555555555555555555555533 444455555555555555555555555555544433321111111110000


Q ss_pred             hhcchhhh---hhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCccccc
Q 046373          197 FENDQTAA---DIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARS  273 (364)
Q Consensus       197 ~~~~~~~~---~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~  273 (364)
                      .+....+.   .......+.++||.|+..|+.+++++|+++|++ ++..|..|+||||+|+..|+.+++++|+++   |+
T Consensus       604 ~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~---GA  679 (823)
T PLN03192        604 HKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLLIMN---GA  679 (823)
T ss_pred             HHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHHHHc---CC
Confidence            00000000   000001233455555555555555555555554 244455555555555555555555555544   44


Q ss_pred             ccccCCCCC-CcHHHHH
Q 046373          274 LIYEGDNNG-NTPLHVL  289 (364)
Q Consensus       274 ~i~~~d~~g-~t~L~~A  289 (364)
                      +++..|..| .||++++
T Consensus       680 dv~~~~~~g~~t~~~l~  696 (823)
T PLN03192        680 DVDKANTDDDFSPTELR  696 (823)
T ss_pred             CCCCCCCCCCCCHHHHH
Confidence            555554444 4454444

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=5.6e-24  Score=207.20  Aligned_cols=178  Identities=19%  Similarity=0.165  Sum_probs=157.4

Q ss_pred             hccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCC
Q 046373           37 AQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNE  116 (364)
Q Consensus        37 ~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  116 (364)
                      +.++.++||.|  +..|+.++++.|++.    +.+++..|..|.||||+|+..|+.+++++|+++|++     ++..|.+
T Consensus       522 ~~~~~~~L~~A--a~~g~~~~l~~Ll~~----G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-----in~~d~~  590 (823)
T PLN03192        522 DPNMASNLLTV--ASTGNAALLEELLKA----KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-----VHIRDAN  590 (823)
T ss_pred             CccchhHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-----CCCcCCC
Confidence            34667899999  999999999998875    888999999999999999999999999999999976     7888999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhh
Q 046373          117 KNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFY  196 (364)
Q Consensus       117 g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  196 (364)
                      |.||||+|+..|+.+++++|++.+....   ...+.++||.|+..|+.++++.|+++|++++.+|.              
T Consensus       591 G~TpL~~A~~~g~~~iv~~L~~~~~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~--------------  653 (823)
T PLN03192        591 GNTALWNAISAKHHKIFRILYHFASISD---PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDH--------------  653 (823)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhcCcccC---cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCC--------------
Confidence            9999999999999999999998776532   34577999999999999999999999999886554              


Q ss_pred             hhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCC-CcHHHHHHHcC
Q 046373          197 FENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRG-WNFLHYAMVSF  257 (364)
Q Consensus       197 ~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g-~t~l~~a~~~~  257 (364)
                                    .|.||||.|+..|+.+++++|+++|++ ++..+..| .||+..+....
T Consensus       654 --------------~G~TpLh~A~~~g~~~iv~~Ll~~GAd-v~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        654 --------------QGATALQVAMAEDHVDMVRLLIMNGAD-VDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             --------------CCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHHH
Confidence                          689999999999999999999999999 57778777 89988875543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.91  E-value=5.4e-25  Score=203.21  Aligned_cols=313  Identities=15%  Similarity=0.078  Sum_probs=260.1

Q ss_pred             CCCCChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcH
Q 046373            3 PISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTP   82 (364)
Q Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~   82 (364)
                      ..++.++|-.||..|+.|+|++|+.+| .+.--+|..|.+||.+|  +-.|+..+++.|+.+   ..+...+.|..+.|+
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rg-aniehrdkkgf~plIma--atagh~tvV~~llk~---ha~veaQsdrtkdt~  827 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRG-ANIEHRDKKGFVPLIMA--ATAGHITVVQDLLKA---HADVEAQSDRTKDTM  827 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhc-ccccccccccchhhhhh--cccCchHHHHHHHhh---hhhhhhhcccccCce
Confidence            346678899999999999999999998 66667778999999999  999999999999875   233345677889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CcCCchHHHHHHhc
Q 046373           83 LHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSE-NKYGKTSLYMAAEG  161 (364)
Q Consensus        83 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~-~~~~~t~l~~A~~~  161 (364)
                      |.+||..|..++|.+||..++.     -..++-...|||..|...|..++++.|+..|..++... .+.|-.||++|..+
T Consensus       828 lSlacsggr~~vvelLl~~gan-----kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmn  902 (2131)
T KOG4369|consen  828 LSLACSGGRTRVVELLLNAGAN-----KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMN  902 (2131)
T ss_pred             EEEecCCCcchHHHHHHHhhcc-----ccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhc
Confidence            9999999999999999999976     35556677899999999999999999999998876433 35688999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCC-CCChHHHHHHhhhhhcchhhhhh-----hccCCCchHHHHHHhcCCHHHHHHHHhcC
Q 046373          162 RYSEMVIELLENCTSVSHEGPN-GKTALHAAAMHFYFENDQTAADI-----ADKDRKMTALHLAAGQGHARTVETILFLD  235 (364)
Q Consensus       162 ~~~~~v~~Ll~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~~~~~-----~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~  235 (364)
                      ||...++.|++.|.++|..-.. .+|+|.+|+...+-+....+...     .+...|.|||+.++..|..++-+.|+..|
T Consensus       903 gh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~g  982 (2131)
T KOG4369|consen  903 GHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAG  982 (2131)
T ss_pred             cccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcc
Confidence            9999999999999998886654 45888888876333332222221     12247999999999999999999999999


Q ss_pred             Ccccccc--cCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCccccc
Q 046373          236 PKCYELV--DHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAV  313 (364)
Q Consensus       236 ~~~~~~~--d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~  313 (364)
                      +|. +.-  .....|+|..++..|+...+..|+..   .+.+..++++|+|+|.+|+..|.  ....-+|++++++.+..
T Consensus       983 ad~-nasPvp~T~dtalti~a~kGh~kfv~~lln~---~atv~v~NkkG~T~Lwla~~Gg~--lss~~il~~~~ad~d~q 1056 (2131)
T KOG4369|consen  983 ADT-NASPVPNTWDTALTIPANKGHTKFVPKLLNG---DATVRVPNKKGCTVLWLASAGGA--LSSCPILVSSVADADQQ 1056 (2131)
T ss_pred             ccc-ccCCCCCcCCccceeecCCCchhhhHHhhCC---ccceecccCCCCcccchhccCCc--cccchHHhhcccChhhh
Confidence            984 332  23455899999999999999999986   78899999999999999999999  88888889999999999


Q ss_pred             ccCCCchhHHhhh-ccccee
Q 046373          314 NKQNVSVTDVLIY-GSRELT  332 (364)
Q Consensus       314 n~~g~t~l~~a~~-~~~~~~  332 (364)
                      |+.-.|++..|.+ ++..+.
T Consensus      1057 dnr~~S~~maafRKgh~~iV 1076 (2131)
T KOG4369|consen 1057 DNRTNSRTMAAFRKGHFAIV 1076 (2131)
T ss_pred             hcccccccHHHHHhchhhee
Confidence            9999999999954 444444

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=2.5e-23  Score=179.84  Aligned_cols=227  Identities=20%  Similarity=0.166  Sum_probs=177.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHh
Q 046373           81 TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE  160 (364)
Q Consensus        81 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  160 (364)
                      -.+.-|+..|..+-+..|+..++.     ++..+.+|.|++|-||.-.+.+||++|+++|++++ ..|..++||+|.|+.
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~-----~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn-~~d~e~wtPlhaaas  115 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGAS-----PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVN-AQDNEGWTPLHAAAS  115 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCC-----ccccCCccchhHHHHHhcccHHHHHHHHHhcCCcc-ccccccCCcchhhcc
Confidence            456678888899999999999876     57778899999999999999999999999999987 788889999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhc-C----CHHHHHHHHhcC
Q 046373          161 GRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQ-G----HARTVETILFLD  235 (364)
Q Consensus       161 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~-~----~~~~~~~Ll~~~  235 (364)
                      .|+..++.+|+++|+++...+.+|..|+..+....-+....    ......+.+  .-+++. .    -.++-.++ ..|
T Consensus       116 cg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~----~~~~r~gi~--iea~R~~~e~~ml~D~~q~l-~~G  188 (527)
T KOG0505|consen  116 CGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLE----TEMARQGID--IEAARKAEEQTMLDDARQWL-NAG  188 (527)
T ss_pred             cccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHH----HHHHHhccc--HHHHhhhhHHHHHHHHHHHH-hcc
Confidence            99999999999999999888888888877655331111110    001112222  112111 1    11223333 355


Q ss_pred             CcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCccccccc
Q 046373          236 PKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNK  315 (364)
Q Consensus       236 ~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~  315 (364)
                      .. ....+..|.|.||.|+..|..+..++|++.   +.+++.+|..|+||||.|+.+|.  .....+|.++|++.+.++.
T Consensus       189 ~~-~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a---g~~~~~~D~dgWtPlHAAA~Wg~--~~~~elL~~~ga~~d~~t~  262 (527)
T KOG0505|consen  189 AE-LDARHARGATALHVAAANGYTEVAALLLQA---GYSVNIKDYDGWTPLHAAAHWGQ--EDACELLVEHGADMDAKTK  262 (527)
T ss_pred             cc-ccccccccchHHHHHHhhhHHHHHHHHHHh---ccCcccccccCCCcccHHHHhhh--HhHHHHHHHhhcccchhhh
Confidence            55 456666699999999999999999999998   89999999999999999999999  4444478899999999999


Q ss_pred             CCCchhHHhhh
Q 046373          316 QNVSVTDVLIY  326 (364)
Q Consensus       316 ~g~t~l~~a~~  326 (364)
                      .|+||+++|-.
T Consensus       263 ~g~~p~dv~de  273 (527)
T KOG0505|consen  263 MGETPLDVADE  273 (527)
T ss_pred             cCCCCccchhh
Confidence            99999999954

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=7.1e-23  Score=168.52  Aligned_cols=163  Identities=25%  Similarity=0.243  Sum_probs=91.8

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHc-----CCHHHHHHHHhcCCCCCCC
Q 046373           72 LLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCH-----GNVQVVKILTKQDPDYPYS  146 (364)
Q Consensus        72 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~-----~~~e~v~~Ll~~~~~~~~~  146 (364)
                      +|..|.+|+|+||||+.++++++|+.||+.+.    ++++.+++-|+||+++++..     .+.++|..|+.-| +++..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgv----C~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaK  335 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGV----CDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAK  335 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCc----ccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchh
Confidence            34455666666666666666666666666553    33555666666666665543     2445555555443 22334


Q ss_pred             CCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHH
Q 046373          147 ENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHAR  226 (364)
Q Consensus       147 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~  226 (364)
                      ....|+|+|++|+.+|+.++|+.|+..|+|+|++|.                            .|.|+|+.|++.|+.|
T Consensus       336 AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDd----------------------------DGSTALMCA~EHGhkE  387 (452)
T KOG0514|consen  336 ASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDD----------------------------DGSTALMCAAEHGHKE  387 (452)
T ss_pred             hhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccC----------------------------CccHHHhhhhhhChHH
Confidence            444566666666666666666666666666655544                            3445555555556666


Q ss_pred             HHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHh
Q 046373          227 TVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLK  267 (364)
Q Consensus       227 ~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~  267 (364)
                      +++.||......+...|.+|.|+|..|...|+.++...|-.
T Consensus       388 ivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  388 IVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             HHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHH
Confidence            66666655444455556666666666666666555544443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=9.9e-23  Score=176.12  Aligned_cols=228  Identities=23%  Similarity=0.253  Sum_probs=174.7

Q ss_pred             hhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHH
Q 046373            8 PNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAA   87 (364)
Q Consensus         8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~   87 (364)
                      -.+..|+..|+.+.++.|+..+ .+++..+.+|.|+||-+  +.-.+.++++++++.    +++++..|..++||||.|+
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~g-a~~~~~n~DglTalhq~--~id~~~e~v~~l~e~----ga~Vn~~d~e~wtPlhaaa  114 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRG-ASPNLCNVDGLTALHQA--CIDDNLEMVKFLVEN----GANVNAQDNEGWTPLHAAA  114 (527)
T ss_pred             HHHHhccccccHHHHHHHhccC-CCccccCCccchhHHHH--HhcccHHHHHHHHHh----cCCccccccccCCcchhhc
Confidence            3567888889999999998887 55666677889999999  888888888888887    8888888999999999999


Q ss_pred             HcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCC----
Q 046373           88 KFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRY----  163 (364)
Q Consensus        88 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~----  163 (364)
                      .+|+..++.+|+++|++     +...+..|..|+..|..--..+++..-....          |.+ +-.+-....    
T Consensus       115 scg~~~i~~~li~~gA~-----~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~----------gi~-iea~R~~~e~~ml  178 (527)
T KOG0505|consen  115 SCGYLNIVEYLIQHGAN-----LLAVNSDGNMPYDLAEDEATLDVLETEMARQ----------GID-IEAARKAEEQTML  178 (527)
T ss_pred             ccccHHHHHHHHHhhhh-----hhhccCCCCCccccccCcchhHHHHHHHHHh----------ccc-HHHHhhhhHHHHH
Confidence            99999999999998876     5667777888877665444444444333221          111 111111111    


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCccccccc
Q 046373          164 SEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVD  243 (364)
Q Consensus       164 ~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d  243 (364)
                      .++-.|+. .|...++++.                            .|.|.||.|+.+|..++.++|++++.+ ++.+|
T Consensus       179 ~D~~q~l~-~G~~~d~~~~----------------------------rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D  228 (527)
T KOG0505|consen  179 DDARQWLN-AGAELDARHA----------------------------RGATALHVAAANGYTEVAALLLQAGYS-VNIKD  228 (527)
T ss_pred             HHHHHHHh-cccccccccc----------------------------ccchHHHHHHhhhHHHHHHHHHHhccC-ccccc
Confidence            12333333 5555433222                            488999999999999999999999999 58899


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHh
Q 046373          244 HRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA  291 (364)
Q Consensus       244 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~  291 (364)
                      .+||||||.|+.+|..+++++|+++   +++++.....|.||+.+|..
T Consensus       229 ~dgWtPlHAAA~Wg~~~~~elL~~~---ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  229 YDGWTPLHAAAHWGQEDACELLVEH---GADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             ccCCCcccHHHHhhhHhHHHHHHHh---hcccchhhhcCCCCccchhh
Confidence            9999999999999999999999998   99999999999999998866

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.88  E-value=3.3e-23  Score=191.56  Aligned_cols=282  Identities=20%  Similarity=0.168  Sum_probs=246.2

Q ss_pred             CChhHHHHHhcCChHHhhhccCChhHHH-hhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHH
Q 046373            6 IYPNFFNAAAAGDAETFKRNTTSDEIES-LLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLH   84 (364)
Q Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~   84 (364)
                      ...+|+.|+-.|++.+|+.|+... ++. ...|.++.|+|.+|  |..|+.++++.|+..    ++.-..++-..+|||.
T Consensus       790 gf~plImaatagh~tvV~~llk~h-a~veaQsdrtkdt~lSla--csggr~~vvelLl~~----gankehrnvsDytPls  862 (2131)
T KOG4369|consen  790 GFVPLIMAATAGHITVVQDLLKAH-ADVEAQSDRTKDTMLSLA--CSGGRTRVVELLLNA----GANKEHRNVSDYTPLS  862 (2131)
T ss_pred             cchhhhhhcccCchHHHHHHHhhh-hhhhhhcccccCceEEEe--cCCCcchHHHHHHHh----hccccccchhhcCchh
Confidence            456899999999999999999986 322 35667999999999  999999999999997    6666677888899999


Q ss_pred             HHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCH
Q 046373           85 LAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYS  164 (364)
Q Consensus        85 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~  164 (364)
                      +|...|..++|..|+.+|+..+   ...-.+.|.+||+.|.++|+.+..+.|++.|.+++.....+-.|+|.+|+..|+.
T Consensus       863 la~Sggy~~iI~~llS~GseIn---SrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~  939 (2131)
T KOG4369|consen  863 LARSGGYTKIIHALLSSGSEIN---SRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRP  939 (2131)
T ss_pred             hhcCcchHHHHHHHhhcccccc---cccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcc
Confidence            9999999999999999997621   2334567899999999999999999999999999877777889999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhc-------cCCCchHHHHHHhcCCHHHHHHHHhcCCc
Q 046373          165 EMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIAD-------KDRKMTALHLAAGQGHARTVETILFLDPK  237 (364)
Q Consensus       165 ~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~-------~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~  237 (364)
                      +++.+|+...+++..+.+.|.|||.-++..++++.+..++....       .....|+|.+++..|+..+++.|+...+.
T Consensus       940 evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at 1019 (2131)
T KOG4369|consen  940 EVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT 1019 (2131)
T ss_pred             hHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc
Confidence            99999999999999999999999999999877666555444322       24567889999999999999999987666


Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehh
Q 046373          238 CYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIK  301 (364)
Q Consensus       238 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~  301 (364)
                       +.+++.+|.|+|..|+..|.+..+..|+++   +++++..|..-.|++.-|.+.|+.+++...
T Consensus      1020 -v~v~NkkG~T~Lwla~~Gg~lss~~il~~~---~ad~d~qdnr~~S~~maafRKgh~~iVk~m 1079 (2131)
T KOG4369|consen 1020 -VRVPNKKGCTVLWLASAGGALSSCPILVSS---VADADQQDNRTNSRTMAAFRKGHFAIVKKM 1079 (2131)
T ss_pred             -eecccCCCCcccchhccCCccccchHHhhc---ccChhhhhcccccccHHHHHhchhheeccc
Confidence             678899999999999999999999999998   999999999999999999999996665543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=2.5e-22  Score=165.30  Aligned_cols=166  Identities=25%  Similarity=0.251  Sum_probs=140.7

Q ss_pred             hhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhc-----CCHHHHHHHHHcCCCCCCCCCC
Q 046373          109 MMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG-----RYSEMVIELLENCTSVSHEGPN  183 (364)
Q Consensus       109 ~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~-----~~~~~v~~Ll~~~~~~~~~~~~  183 (364)
                      .++..|.+|+|+|||++.++++++|+.|++.|.......++-|.||+++++..     .+..+|.-|...| ++|.+   
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaK---  335 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAK---  335 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchh---
Confidence            36778888999999999999999999999887766667888889998888743     3467788887776 44321   


Q ss_pred             CCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHH
Q 046373          184 GKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELK  263 (364)
Q Consensus       184 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~  263 (364)
                                              -...|+|+|++|+..|+.++++.||.-|+| +|..|.+|.|+|++|+..|+.|+++
T Consensus       336 ------------------------AsQ~gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivk  390 (452)
T KOG0514|consen  336 ------------------------ASQHGQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVK  390 (452)
T ss_pred             ------------------------hhhhcchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHH
Confidence                                    223799999999999999999999999999 7999999999999999999999999


Q ss_pred             HHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcc
Q 046373          264 ILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYD  305 (364)
Q Consensus       264 ~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~  305 (364)
                      .|+..  +.+++...|.+|.|+|.+|.+.|+.|+..+++-+.
T Consensus       391 lLLA~--p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  391 LLLAV--PSCDISLTDVDGSTALSIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             HHhcc--CcccceeecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence            99987  58999999999999999999999988877776543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.9e-21  Score=152.75  Aligned_cols=147  Identities=15%  Similarity=0.124  Sum_probs=125.5

Q ss_pred             HHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHH---HHHHHHHhhHHHh
Q 046373           31 IESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNI---VSFLIERAKLAAW  107 (364)
Q Consensus        31 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~---v~~Ll~~~~~~~~  107 (364)
                      ++....+.++.++||.|  ++.|+.+.+..+++.+...+..++..|..|+||||+|+..|+.+.   +++|++.+++   
T Consensus        11 ~~~~~~~~~~~~~l~~a--~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad---   85 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRI--CRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD---   85 (166)
T ss_pred             hHHhhhccCCCcHHHHH--HHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC---
Confidence            55556677889999999  999998666555554545578888999999999999999998654   8999999976   


Q ss_pred             HhhhcCC-CCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 046373          108 QMMRMTN-NEKNTALHEAVCHGNVQVVKILTK-QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK  185 (364)
Q Consensus       108 ~~~~~~~-~~g~t~l~~a~~~~~~e~v~~Ll~-~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  185 (364)
                        ++..+ ..|.||||+|+..++.+++++|+. .++++. ..+..|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus        86 --in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~-~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         86 --INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG-AINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             --CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence              67777 589999999999999999999995 788865 6788999999999999999999999999999988887664

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=2.6e-20  Score=146.31  Aligned_cols=141  Identities=13%  Similarity=0.130  Sum_probs=82.1

Q ss_pred             ccccccCCCCCcHHHHHHHcCCH----HHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHH---HHHHHhcCCC
Q 046373           70 SLLLQVNAKGDTPLHLAAKFGHS----NIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQV---VKILTKQDPD  142 (364)
Q Consensus        70 ~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~---v~~Ll~~~~~  142 (364)
                      .+++..+.++.++||.|+..|+.    +++++|++.+..     ++..|..|.||||+|+..|+.+.   +++|++.|++
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-----~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad   85 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL-----LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD   85 (166)
T ss_pred             hHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-----hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC
Confidence            34445556666677777777766    444455555543     45556667777777776665433   5666666666


Q ss_pred             CCCCCC-cCCchHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHH
Q 046373          143 YPYSEN-KYGKTSLYMAAEGRYSEMVIELLE-NCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAA  220 (364)
Q Consensus       143 ~~~~~~-~~~~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~  220 (364)
                      ++ ..+ ..|.||||+|+..++.+++++|++ .|++++..+.                            .|.||||+|+
T Consensus        86 in-~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~----------------------------~g~tpL~~A~  136 (166)
T PHA02743         86 IN-ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINY----------------------------QHETAYHIAY  136 (166)
T ss_pred             CC-CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCC----------------------------CCCCHHHHHH
Confidence            54 333 356666666666666666666663 5665544332                            3455555555


Q ss_pred             hcCCHHHHHHHHhcCCcccccccCC
Q 046373          221 GQGHARTVETILFLDPKCYELVDHR  245 (364)
Q Consensus       221 ~~~~~~~~~~Ll~~~~~~~~~~d~~  245 (364)
                      ..++.+++++|++++++ ++.++..
T Consensus       137 ~~~~~~iv~~Ll~~ga~-~~~~~~~  160 (166)
T PHA02743        137 KMRDRRMMEILRANGAV-CDDPLSI  160 (166)
T ss_pred             HcCCHHHHHHHHHcCCC-CCCcccC
Confidence            55666666666666655 2434433

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=1.8e-20  Score=147.98  Aligned_cols=134  Identities=19%  Similarity=0.152  Sum_probs=111.8

Q ss_pred             hhhccCCchHHHHHHHHHhcCCChHHHHHHH--hcCCccccccCCCCCcHHHHHHHcCC----HHHHHHHHHHhhHHHhH
Q 046373           35 LTAQTKNTILHINIISQKRKNGSTKFIGEML--KKCPSLLLQVNAKGDTPLHLAAKFGH----SNIVSFLIERAKLAAWQ  108 (364)
Q Consensus        35 ~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l--~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~  108 (364)
                      ..+..|.||||+|  ++.|+.++++.|+..+  ...+.+++..|..|.||||+|+..|+    .+++++|++.+++    
T Consensus        16 ~~~~~g~t~Lh~A--a~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad----   89 (169)
T PHA02741         16 EKNSEGENFFHEA--ARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD----   89 (169)
T ss_pred             ccccCCCCHHHHH--HHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC----
Confidence            3455899999999  9999999999887643  12356788889999999999999998    5888999998876    


Q ss_pred             hhhcCCC-CCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCC
Q 046373          109 MMRMTNN-EKNTALHEAVCHGNVQVVKILTKQ-DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTS  176 (364)
Q Consensus       109 ~~~~~~~-~g~t~l~~a~~~~~~e~v~~Ll~~-~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~  176 (364)
                       ++.++. .|.||||+|+..++.+++++|++. +.++. ..+..|.|||++|+..++.+++++|++.++.
T Consensus        90 -in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~-~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         90 -INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH-FCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             -CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence             666674 899999999999999999999974 77755 6788899999999999999999999987644

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=9.8e-20  Score=143.75  Aligned_cols=137  Identities=15%  Similarity=0.177  Sum_probs=112.6

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHh-hHHHhHhhhcCCCCCCcHHHHHHHcCC----HHHHHHHHhcCCCCCCC
Q 046373           72 LLQVNAKGDTPLHLAAKFGHSNIVSFLIERA-KLAAWQMMRMTNNEKNTALHEAVCHGN----VQVVKILTKQDPDYPYS  146 (364)
Q Consensus        72 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~g~t~l~~a~~~~~----~e~v~~Ll~~~~~~~~~  146 (364)
                      ++..+..|.||||+|+..|+.++++.|+... .......++..|..|.||||+|+..|+    .+++++|++.|++++ .
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin-~   92 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN-A   92 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC-C
Confidence            4556789999999999999999999986532 001113378889999999999999998    589999999999977 4


Q ss_pred             CC-cCCchHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCC
Q 046373          147 EN-KYGKTSLYMAAEGRYSEMVIELLE-NCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGH  224 (364)
Q Consensus       147 ~~-~~~~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~  224 (364)
                      .+ ..|.||||+|+..++.+++++|+. .|++++..+.                            .|.||||.|+..++
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~----------------------------~g~tpL~~A~~~~~  144 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA----------------------------DNKSPFELAIDNED  144 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC----------------------------CCCCHHHHHHHCCC
Confidence            45 489999999999999999999997 5888876554                            56777788888889


Q ss_pred             HHHHHHHHhcCCc
Q 046373          225 ARTVETILFLDPK  237 (364)
Q Consensus       225 ~~~~~~Ll~~~~~  237 (364)
                      .+++++|++.++.
T Consensus       145 ~~iv~~L~~~~~~  157 (169)
T PHA02741        145 VAMMQILREIVAT  157 (169)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999986543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=2.8e-19  Score=151.03  Aligned_cols=158  Identities=13%  Similarity=0.105  Sum_probs=92.2

Q ss_pred             hhcCCCCCCcH-HHHHHHcCCHHHHHHHHhcCCCCCCC---CCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 046373          110 MRMTNNEKNTA-LHEAVCHGNVQVVKILTKQDPDYPYS---ENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK  185 (364)
Q Consensus       110 ~~~~~~~g~t~-l~~a~~~~~~e~v~~Ll~~~~~~~~~---~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  185 (364)
                      +..+|..|.|+ ||.|+..|+.+++++|+++|++++..   .+..|.||||+|+..++.+++++|+++|++++..+.   
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~---  101 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAE---  101 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccC---
Confidence            44455555544 44555556677777777777665532   134567777777777777777777777776653211   


Q ss_pred             ChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHH
Q 046373          186 TALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKIL  265 (364)
Q Consensus       186 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~l  265 (364)
                                              ..|.||||.|+..++.+++++|+++|++ ++..|..|.||||+|+..++.+++..+
T Consensus       102 ------------------------~~g~TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~  156 (300)
T PHA02884        102 ------------------------EAKITPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMI  156 (300)
T ss_pred             ------------------------CCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHh
Confidence                                    1355666666666777777777777766 356666777777777766666554333


Q ss_pred             HhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCC
Q 046373          266 LKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGG  308 (364)
Q Consensus       266 l~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~  308 (364)
                      ..     .   ..+..+.+|++++.   +  ...+.+|+.+++
T Consensus       157 ~~-----~---~~~~~~~~~~~~~~---n--~ei~~~Lish~v  186 (300)
T PHA02884        157 CD-----N---EISNFYKHPKKILI---N--FDILKILVSHFI  186 (300)
T ss_pred             cC-----C---cccccccChhhhhc---c--HHHHHHHHHHHH
Confidence            32     1   12445566666542   2  333344444544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.4e-19  Score=152.85  Aligned_cols=157  Identities=14%  Similarity=0.028  Sum_probs=112.9

Q ss_pred             ccccCCCCCc-HHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcC----CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 046373           72 LLQVNAKGDT-PLHLAAKFGHSNIVSFLIERAKLAAWQMMRMT----NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYS  146 (364)
Q Consensus        72 ~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~  146 (364)
                      +..+|..|+| +||.|+..|+.+++++|+++|++     ++..    +..|.||||+|+..++.+++++|+++|++++..
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAd-----iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~   99 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGAD-----PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRY   99 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCC-----ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcc
Confidence            3445666655 56667777889999999999976     4554    458999999999999999999999999987743


Q ss_pred             CCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHH
Q 046373          147 ENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHAR  226 (364)
Q Consensus       147 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~  226 (364)
                      .+..|.||||+|+..++.+++++|++.|++++..+..|.||+|+|+...................+.+|++.+   ++.+
T Consensus       100 ~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~n~e  176 (300)
T PHA02884        100 AEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNEISNFYKHPKKIL---INFD  176 (300)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCcccccccChhhhh---ccHH
Confidence            4567899999999999999999999999999988888888888877642111111111111223445565543   3567


Q ss_pred             HHHHHHhcCC
Q 046373          227 TVETILFLDP  236 (364)
Q Consensus       227 ~~~~Ll~~~~  236 (364)
                      +++.|+.+..
T Consensus       177 i~~~Lish~v  186 (300)
T PHA02884        177 ILKILVSHFI  186 (300)
T ss_pred             HHHHHHHHHH
Confidence            7777776654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=7.7e-20  Score=142.40  Aligned_cols=66  Identities=18%  Similarity=0.194  Sum_probs=31.3

Q ss_pred             CCCCCCcHHHHHHHcCCH---HHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHH-cCCCCC
Q 046373          113 TNNEKNTALHEAVCHGNV---QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE-NCTSVS  178 (364)
Q Consensus       113 ~~~~g~t~l~~a~~~~~~---e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~-~~~~~~  178 (364)
                      .+..|.||||+|+..|+.   +++++|++.|++++...+..|.||||+|+..++.+++++|+. .|++++
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n  120 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME  120 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc
Confidence            344555555555555443   234455555554442112345555555555555555555554 244443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=2.4e-20  Score=145.29  Aligned_cols=136  Identities=21%  Similarity=0.193  Sum_probs=110.2

Q ss_pred             HhhhhccCCchHHHHHHHHHhcCCChHHHHHH--H-hcCCccccccCCCCCcHHHHHHHcCCH---HHHHHHHHHhhHHH
Q 046373           33 SLLTAQTKNTILHINIISQKRKNGSTKFIGEM--L-KKCPSLLLQVNAKGDTPLHLAAKFGHS---NIVSFLIERAKLAA  106 (364)
Q Consensus        33 ~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~--l-~~~~~~~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~~~~~~  106 (364)
                      ....+.+|.||||+|  ++.|+  +++.+...  . ...+..+...|..|.||||+|+..|+.   +++++|++.|++  
T Consensus        10 ~~~~d~~g~tpLh~A--~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad--   83 (154)
T PHA02736         10 ASEPDIEGENILHYL--CRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD--   83 (154)
T ss_pred             HHhcCCCCCCHHHHH--HHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC--
Confidence            445667899999999  99986  33333221  0 111223456788999999999999987   468999999976  


Q ss_pred             hHhhhcCC-CCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCC
Q 046373          107 WQMMRMTN-NEKNTALHEAVCHGNVQVVKILTKQ-DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS  178 (364)
Q Consensus       107 ~~~~~~~~-~~g~t~l~~a~~~~~~e~v~~Ll~~-~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~  178 (364)
                         ++.++ ..|.||||+|+..++.+++++|+.+ +.+++ ..+..|.||||+|+..|+.+++++|++.|++++
T Consensus        84 ---in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n-~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         84 ---INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME-ILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             ---ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc-cccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence               67777 4899999999999999999999985 77765 788899999999999999999999999998765

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=1.1e-19  Score=134.39  Aligned_cols=144  Identities=24%  Similarity=0.175  Sum_probs=127.8

Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHH
Q 046373          152 KTSLYMAAEGRYSEMVIELLENCTS-VSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVET  230 (364)
Q Consensus       152 ~t~l~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~  230 (364)
                      ...+-+|+..+....|+.|++..++ +|.+|.                            .+.||||.|+.+|+.++++.
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~----------------------------D~YTpLHRAaYn~h~div~~  115 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDE----------------------------DEYTPLHRAAYNGHLDIVHE  115 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhcccccccccc----------------------------ccccHHHHHHhcCchHHHHH
Confidence            3457789999999999999987655 454444                            57788888999999999999


Q ss_pred             HHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcc
Q 046373          231 ILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNY  310 (364)
Q Consensus       231 Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~  310 (364)
                      |+..|++ .+.+...|+||||.||.+++.+++-.|+++   |+++|+......||||+|+..++.......+|.+.+..+
T Consensus       116 ll~~gAn-~~a~T~~GWTPLhSAckWnN~~va~~LLqh---gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~p  191 (228)
T KOG0512|consen  116 LLLSGAN-KEAKTNEGWTPLHSACKWNNFEVAGRLLQH---GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHP  191 (228)
T ss_pred             HHHccCC-cccccccCccchhhhhcccchhHHHHHHhc---cCcccccccccchhhHHhhcccchHHHHHHHhhccccCh
Confidence            9999999 478899999999999999999999999999   999999999999999999999997777778888999999


Q ss_pred             cccccCCCchhHHhhhc
Q 046373          311 GAVNKQNVSVTDVLIYG  327 (364)
Q Consensus       311 ~~~n~~g~t~l~~a~~~  327 (364)
                      ..++..+.||+++|.+.
T Consensus       192 g~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  192 GLKNNLEETAFDIARRT  208 (228)
T ss_pred             hhhcCccchHHHHHHHh
Confidence            99999999999999876

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=6.6e-19  Score=130.36  Aligned_cols=139  Identities=24%  Similarity=0.195  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHH
Q 046373           43 ILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALH  122 (364)
Q Consensus        43 ~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~  122 (364)
                      .+-+|  +..+....|+.|++   .....+|.+|.+|+||||-|+.+|+.+||+.|+..|++     ...+...|+||||
T Consensus        66 l~lwa--ae~nrl~eV~~lL~---e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-----~~a~T~~GWTPLh  135 (228)
T KOG0512|consen   66 LLLWA--AEKNRLTEVQRLLS---EKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-----KEAKTNEGWTPLH  135 (228)
T ss_pred             HHHHH--HhhccHHHHHHHHH---hccccccccccccccHHHHHHhcCchHHHHHHHHccCC-----cccccccCccchh
Confidence            57788  88888888888876   44677899999999999999999999999999999987     6778889999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCC-HHHHHHHHH-cCCCCCCCCCCCCChHHHHH
Q 046373          123 EAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRY-SEMVIELLE-NCTSVSHEGPNGKTALHAAA  192 (364)
Q Consensus       123 ~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~-~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~  192 (364)
                      .||.+++.+++-+|+++|++++ .......||||.|+...+ ...+.+|+. .+..+...+..+.||+..|-
T Consensus       136 SAckWnN~~va~~LLqhgaDVn-A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  136 SACKWNNFEVAGRLLQHGADVN-AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             hhhcccchhHHHHHHhccCccc-ccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHH
Confidence            9999999999999999999987 455557899999998766 456666654 45665555555555555443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.75  E-value=9.6e-18  Score=152.54  Aligned_cols=238  Identities=21%  Similarity=0.228  Sum_probs=177.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhHH----HhHhhhcCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCCCC----CC
Q 046373           79 GDTPLHLAAKFGHSNIVSFLIERAKLA----AWQMMRMTNNEKNTALHEAVCH---GNVQVVKILTKQDPDYPY----SE  147 (364)
Q Consensus        79 g~t~L~~A~~~~~~~~v~~Ll~~~~~~----~~~~~~~~~~~g~t~l~~a~~~---~~~e~v~~Ll~~~~~~~~----~~  147 (364)
                      .+.++..|...+..+....++......    .-..++.+...|.|.||.|..+   ++.++++.|++..+.+.+    ..
T Consensus       101 d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~e  180 (782)
T KOG3676|consen  101 DRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSE  180 (782)
T ss_pred             chhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhH
Confidence            347888888888888777777655321    0122455677899999999885   356899999987664321    23


Q ss_pred             CcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcc------hhhhhhhccCCCchHHHHHHh
Q 046373          148 NKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEND------QTAADIADKDRKMTALHLAAG  221 (364)
Q Consensus       148 ~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~t~L~~a~~  221 (364)
                      ...|.||||.|+.+.+.++|++|++.|+|++.+..           ...+...      +........+.|+.||..|+-
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~-----------G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC  249 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARAC-----------GAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAAC  249 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhh-----------ccccCcccccccccccCCcceeeeccCchHHHHH
Confidence            34799999999999999999999999999876432           1111110      011112223578999999999


Q ss_pred             cCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccc--cccCCCCCCcHHHHHHhcCCcceee
Q 046373          222 QGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSL--IYEGDNNGNTPLHVLAAIRPKEFFK  299 (364)
Q Consensus       222 ~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~--i~~~d~~g~t~L~~A~~~~~~~~~~  299 (364)
                      .++.+++++|+++++| ++..|..|+|.||..+..-..++...++++   +++  ...+|..|-|||.+|++-|..+++.
T Consensus       250 ~nq~eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~---ga~~l~~v~N~qgLTPLtLAaklGk~emf~  325 (782)
T KOG3676|consen  250 TNQPEIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALEL---GANALEHVRNNQGLTPLTLAAKLGKKEMFQ  325 (782)
T ss_pred             cCCHHHHHHHHhcCCC-CCccccCCChHHHHHHHHHHHHHHHHHHhc---CCCccccccccCCCChHHHHHHhhhHHHHH
Confidence            9999999999999999 589999999999999999889999999998   666  8899999999999999999976665


Q ss_pred             hhhhcccC------------Cccccccc--CCCchhHHhhhcccce
Q 046373          300 IKVRYDAG------------GNYGAVNK--QNVSVTDVLIYGSREL  331 (364)
Q Consensus       300 ~~ll~~~~------------~~~~~~n~--~g~t~l~~a~~~~~~~  331 (364)
                      ..+..++-            -+.+..|.  +-.|+|.+.+++.++.
T Consensus       326 ~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg~~~e  371 (782)
T KOG3676|consen  326 HILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYGIKNE  371 (782)
T ss_pred             HHHHhhcccceeecccccccccchhcccccchhhhhhhhhcCCcHH
Confidence            55544211            12333333  4588999998884443

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.73  E-value=3.1e-17  Score=115.15  Aligned_cols=89  Identities=39%  Similarity=0.542  Sum_probs=77.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcC
Q 046373           83 LHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGR  162 (364)
Q Consensus        83 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~  162 (364)
                      ||+|+..|+.+++++|++.+..     ++.    |.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+.+|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-----~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-----INL----GNTALHYAAENGNLEIVKLLLENGADIN-SQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-----TTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTSSBHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-----CCC----CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCCCCCCHHHHHHHcC
Confidence            7999999999999999997754     222    8899999999999999999999999876 67788999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCC
Q 046373          163 YSEMVIELLENCTSVSHEG  181 (364)
Q Consensus       163 ~~~~v~~Ll~~~~~~~~~~  181 (364)
                      +.+++++|+++|++++.+|
T Consensus        71 ~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   71 NLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHHHHTTT-TTSS-
T ss_pred             CHHHHHHHHHcCCCCCCcC
Confidence            9999999999999988764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=8.6e-18  Score=134.72  Aligned_cols=159  Identities=23%  Similarity=0.200  Sum_probs=127.1

Q ss_pred             hHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHH
Q 046373            9 NFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAK   88 (364)
Q Consensus         9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~   88 (364)
                      .++--|+.|+--.|+..++..+-+.+..|..|.+|||||  ++-|+..+++.|+..    ++-+|..+.-..||||+|+.
T Consensus         3 dif~wcregna~qvrlwld~tehdln~gddhgfsplhwa--akegh~aivemll~r----garvn~tnmgddtplhlaaa   76 (448)
T KOG0195|consen    3 DIFGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWA--AKEGHVAIVEMLLSR----GARVNSTNMGDDTPLHLAAA   76 (448)
T ss_pred             hhhhhhhcCCeEEEEEEecCcccccccccccCcchhhhh--hhcccHHHHHHHHhc----ccccccccCCCCcchhhhhh
Confidence            345568888888888888875455555666999999999  999999999999887    88888888888999999999


Q ss_pred             cCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHH
Q 046373           89 FGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVI  168 (364)
Q Consensus        89 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~  168 (364)
                      +|+.++|+.|++..++     ++..+..|.|||||||-.|...+.+-|+..|+.+. ..++.|.|||..|--.-...+.+
T Consensus        77 hghrdivqkll~~kad-----vnavnehgntplhyacfwgydqiaedli~~ga~v~-icnk~g~tpldkakp~l~~~l~e  150 (448)
T KOG0195|consen   77 HGHRDIVQKLLSRKAD-----VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN-ICNKKGMTPLDKAKPMLKNTLLE  150 (448)
T ss_pred             cccHHHHHHHHHHhcc-----cchhhccCCCchhhhhhhcHHHHHHHHHhccceee-ecccCCCCchhhhchHHHHHHHH
Confidence            9999999999998876     78889999999999999999999999999998876 77888999998873222112222


Q ss_pred             HHHHcCCCCCC
Q 046373          169 ELLENCTSVSH  179 (364)
Q Consensus       169 ~Ll~~~~~~~~  179 (364)
                      .--++|-+++.
T Consensus       151 ~aek~gq~~nr  161 (448)
T KOG0195|consen  151 IAEKHGQSPNR  161 (448)
T ss_pred             HHHHhCCCCCc
Confidence            22345655553

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.72  E-value=6.8e-17  Score=147.09  Aligned_cols=197  Identities=21%  Similarity=0.208  Sum_probs=146.7

Q ss_pred             chHHHHHHHHHhcCCChHHHHHHHhcC-----CccccccCCCCCcHHHHHHHcC---CHHHHHHHHHHhhHHHhHhhhcC
Q 046373           42 TILHINIISQKRKNGSTKFIGEMLKKC-----PSLLLQVNAKGDTPLHLAAKFG---HSNIVSFLIERAKLAAWQMMRMT  113 (364)
Q Consensus        42 t~L~~A~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~~  113 (364)
                      .++..|  ...+..+.++.+.......     .-.++.+...|.|.||.|..+.   +.++++.|++..+.-........
T Consensus       103 ~~~~~~--~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~e  180 (782)
T KOG3676|consen  103 DALFIA--DSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSE  180 (782)
T ss_pred             hhhhhc--cccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhH
Confidence            455666  6666666665555432111     2345666778999999999854   46899999998765333334445


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC--------C--------------CcCCchHHHHHHhcCCHHHHHHHH
Q 046373          114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYS--------E--------------NKYGKTSLYMAAEGRYSEMVIELL  171 (364)
Q Consensus       114 ~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~--------~--------------~~~~~t~l~~A~~~~~~~~v~~Ll  171 (364)
                      .+.|.||||+|+.+.+.++|++|++.|++++..        .              -..|+.||.+|+..+..+++++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            678999999999999999999999999886431        1              124789999999999999999999


Q ss_pred             HcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcc-cccccCCCCcHH
Q 046373          172 ENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKC-YELVDHRGWNFL  250 (364)
Q Consensus       172 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~-~~~~d~~g~t~l  250 (364)
                      ++|+|++.+|..|+|.||..+..                            -..++...++++++.. ...++..|-|||
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~----------------------------~~~~My~~~L~~ga~~l~~v~N~qgLTPL  312 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIH----------------------------FVTEMYDLALELGANALEHVRNNQGLTPL  312 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHH----------------------------HHHHHHHHHHhcCCCccccccccCCCChH
Confidence            99999999999777777766543                            3456677777777662 245677788888


Q ss_pred             HHHHHcCCHHHHHHHHhC
Q 046373          251 HYAMVSFKLHELKILLKN  268 (364)
Q Consensus       251 ~~a~~~~~~~~~~~ll~~  268 (364)
                      ..|+..|+.++.+.+++.
T Consensus       313 tLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  313 TLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHhhhHHHHHHHHHh
Confidence            888888888888888876

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=6.6e-18  Score=135.37  Aligned_cols=119  Identities=31%  Similarity=0.369  Sum_probs=111.0

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 046373           69 PSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSEN  148 (364)
Q Consensus        69 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~  148 (364)
                      ..+.|.-|..|++|||+|+..|+..+++.|+..|+.     ++..+....||||+|+..|+-++|+.|++..++++ ..+
T Consensus        24 ehdln~gddhgfsplhwaakegh~aivemll~rgar-----vn~tnmgddtplhlaaahghrdivqkll~~kadvn-avn   97 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-----VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVN-AVN   97 (448)
T ss_pred             ccccccccccCcchhhhhhhcccHHHHHHHHhcccc-----cccccCCCCcchhhhhhcccHHHHHHHHHHhcccc-hhh
Confidence            556788889999999999999999999999999987     78888888999999999999999999999999987 788


Q ss_pred             cCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHH
Q 046373          149 KYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM  193 (364)
Q Consensus       149 ~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~  193 (364)
                      ..|.|||||||.-|.-.+.+-|+..|+.+++.++.|.||+..|--
T Consensus        98 ehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   98 EHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             ccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            889999999999999999999999999999999999999987653

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=1.1e-15  Score=114.77  Aligned_cols=102  Identities=32%  Similarity=0.484  Sum_probs=72.3

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchH
Q 046373           75 VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTS  154 (364)
Q Consensus        75 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~  154 (364)
                      .|..|.||||+|+..++.+++++|++.+..     ....+..|.||+|.|+..++.+++++|++.++... ..+..+.||
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~-----~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~   76 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD-----VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN-ARDKDGNTP   76 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC-----CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCH
Confidence            345677777777777777777777777754     35566677777777777777777777777776543 445667778


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 046373          155 LYMAAEGRYSEMVIELLENCTSVSHEGP  182 (364)
Q Consensus       155 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~  182 (364)
                      +|+|+..++.+++++|++.+.+.+..+.
T Consensus        77 l~~a~~~~~~~~~~~L~~~~~~~~~~~~  104 (126)
T cd00204          77 LHLAARNGNLDVVKLLLKHGADVNARDK  104 (126)
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCCcccCC
Confidence            8887777777777777777755544333

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=1.3e-16  Score=111.99  Aligned_cols=89  Identities=33%  Similarity=0.402  Sum_probs=78.7

Q ss_pred             HHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCc
Q 046373          216 LHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPK  295 (364)
Q Consensus       216 L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~  295 (364)
                      ||.|++.|+.+++++|++.+.+. +.    |+||||+|+..|+.+++++|++.   +++++.+|..|+||||+|+..++ 
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~-   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLEN---GADINSQDKNGNTALHYAAENGN-   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHHT---TTCTT-BSTTSSBHHHHHHHTTH-
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHHh---cccccccCCCCCCHHHHHHHcCC-
Confidence            79999999999999999988763 33    89999999999999999999998   89999999999999999999999 


Q ss_pred             ceeehhhhcccCCcccccc
Q 046373          296 EFFKIKVRYDAGGNYGAVN  314 (364)
Q Consensus       296 ~~~~~~ll~~~~~~~~~~n  314 (364)
                       ...+.+|+++|++++.+|
T Consensus        72 -~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   72 -LEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             -HHHHHHHHHTTT-TTSS-
T ss_pred             -HHHHHHHHHcCCCCCCcC
Confidence             667788889999998775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.68  E-value=4.6e-16  Score=116.78  Aligned_cols=123  Identities=35%  Similarity=0.450  Sum_probs=109.8

Q ss_pred             hccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCC
Q 046373           37 AQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNE  116 (364)
Q Consensus        37 ~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  116 (364)
                      +..|.||||+|  +..++.++++++++.    +...+..+..|.||||.|+..++.+++++|++.++.     ++..+..
T Consensus         4 ~~~g~t~l~~a--~~~~~~~~i~~li~~----~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-----~~~~~~~   72 (126)
T cd00204           4 DEDGRTPLHLA--ASNGHLEVVKLLLEN----GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-----VNARDKD   72 (126)
T ss_pred             CcCCCCHHHHH--HHcCcHHHHHHHHHc----CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----ccccCCC
Confidence            35899999999  999999999999986    555578888999999999999999999999999864     5667788


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHH
Q 046373          117 KNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELL  171 (364)
Q Consensus       117 g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll  171 (364)
                      +.||+|+|+..++.+++++|++++.... ..+..+.||+++|...++.+++++|+
T Consensus        73 ~~~~l~~a~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          73 GNTPLHLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999999999987755 56788999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.58  E-value=4.1e-15  Score=98.28  Aligned_cols=103  Identities=15%  Similarity=0.153  Sum_probs=88.0

Q ss_pred             hhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHH
Q 046373            8 PNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAA   87 (364)
Q Consensus         8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~   87 (364)
                      ..+.+++++|.++.||.....+ .+.+..- .|.+|||+|  +-+|+.++++|++..    +++++.+|..|-|||..|+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g-~nVn~~~-ggR~plhyA--AD~GQl~ilefli~i----GA~i~~kDKygITPLLsAv   75 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEG-LNVNEIY-GGRTPLHYA--ADYGQLSILEFLISI----GANIQDKDKYGITPLLSAV   75 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcc-ccHHHHh-CCcccchHh--hhcchHHHHHHHHHh----ccccCCccccCCcHHHHHH
Confidence            4678999999999999988887 6555554 899999999  999999999999987    8999999999999999999


Q ss_pred             HcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHH
Q 046373           88 KFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHE  123 (364)
Q Consensus        88 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~  123 (364)
                      ..||.++|++|++.|++     -.....+|.+.+..
T Consensus        76 wEGH~~cVklLL~~GAd-----rt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   76 WEGHRDCVKLLLQNGAD-----RTIHAPDGTALIEA  106 (117)
T ss_pred             HHhhHHHHHHHHHcCcc-----cceeCCCchhHHhh
Confidence            99999999999999986     34555667665543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.54  E-value=3.9e-14  Score=93.73  Aligned_cols=102  Identities=22%  Similarity=0.251  Sum_probs=88.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhc
Q 046373           82 PLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG  161 (364)
Q Consensus        82 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~  161 (364)
                      -+.+++++|.++-|+..+..+.+     ++. -..|++|||+|+-.|..+++.+|+..|+++. ..|+.|-|||-.|+..
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~n-----Vn~-~~ggR~plhyAAD~GQl~ilefli~iGA~i~-~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLN-----VNE-IYGGRTPLHYAADYGQLSILEFLISIGANIQ-DKDKYGITPLLSAVWE   77 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcccc-----HHH-HhCCcccchHhhhcchHHHHHHHHHhccccC-CccccCCcHHHHHHHH
Confidence            46788999999999998888844     222 2378999999999999999999999999977 7899999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCChHHH
Q 046373          162 RYSEMVIELLENCTSVSHEGPNGKTALHA  190 (364)
Q Consensus       162 ~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~  190 (364)
                      ||.+||++|++.|++-.+..++|.+.+..
T Consensus        78 GH~~cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   78 GHRDCVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             hhHHHHHHHHHcCcccceeCCCchhHHhh
Confidence            99999999999999988888887766544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.49  E-value=1.3e-12  Score=109.05  Aligned_cols=126  Identities=25%  Similarity=0.244  Sum_probs=81.9

Q ss_pred             CCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCC--
Q 046373          147 ENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGH--  224 (364)
Q Consensus       147 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~--  224 (364)
                      .+..+.++++.++..+..+++++++..|++++.++..|                            .||||+|+..++  
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g----------------------------~t~l~~a~~~~~~~  120 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADG----------------------------DTPLHLAALNGNPP  120 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCC----------------------------CcHHHHHHhcCCcc
Confidence            34446677777777777777777777777766555533                            334444444444  


Q ss_pred             ---HHHHHHHHhcCC--cccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceee
Q 046373          225 ---ARTVETILFLDP--KCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFK  299 (364)
Q Consensus       225 ---~~~~~~Ll~~~~--~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~  299 (364)
                         .+++++|++.++  +..+..|..|+||||+|+..|+.++++.+++.   +++++.++..|.|+++.|+..++  ...
T Consensus       121 ~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~---~~~~~~~~~~g~t~l~~a~~~~~--~~~  195 (235)
T COG0666         121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA---GADPNSRNSYGVTALDPAAKNGR--IEL  195 (235)
T ss_pred             cchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhc---CCCCcccccCCCcchhhhcccch--HHH
Confidence               777777777777  44555677777777777777777777777776   67777777777777777777777  444


Q ss_pred             hhhhcc
Q 046373          300 IKVRYD  305 (364)
Q Consensus       300 ~~ll~~  305 (364)
                      +..+..
T Consensus       196 ~~~l~~  201 (235)
T COG0666         196 VKLLLD  201 (235)
T ss_pred             HHHHHh
Confidence            444444

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.46  E-value=8.9e-13  Score=109.94  Aligned_cols=134  Identities=28%  Similarity=0.334  Sum_probs=117.8

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCC-----HHHHHHHHhcCC--
Q 046373           69 PSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGN-----VQVVKILTKQDP--  141 (364)
Q Consensus        69 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~-----~e~v~~Ll~~~~--  141 (364)
                      .......+..+.++++.++..+..+++++++..+.+     ++..+..|.||||+|+..++     .++++.|++.+.  
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~  137 (235)
T COG0666          63 DRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGAD-----VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADL  137 (235)
T ss_pred             ccccccCCccccCHHHHHHHcCcHHHHHHHHHcCCC-----cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCC
Confidence            344455667789999999999999999999999976     68889999999999999999     999999999999  


Q ss_pred             CCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHh
Q 046373          142 DYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAG  221 (364)
Q Consensus       142 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~  221 (364)
                      ......+..|.||||+|+..|+.++++.|++.|++++.++.                            .+.|+++.|+.
T Consensus       138 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~----------------------------~g~t~l~~a~~  189 (235)
T COG0666         138 DVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNS----------------------------YGVTALDPAAK  189 (235)
T ss_pred             CCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCccccc----------------------------CCCcchhhhcc
Confidence            66767899999999999999999999999999998876533                            67788888888


Q ss_pred             cCCHHHHHHHHhcC
Q 046373          222 QGHARTVETILFLD  235 (364)
Q Consensus       222 ~~~~~~~~~Ll~~~  235 (364)
                      .++.+++..+++.+
T Consensus       190 ~~~~~~~~~l~~~~  203 (235)
T COG0666         190 NGRIELVKLLLDKG  203 (235)
T ss_pred             cchHHHHHHHHhcC
Confidence            88889988888765

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.43  E-value=1.6e-13  Score=86.14  Aligned_cols=56  Identities=29%  Similarity=0.320  Sum_probs=28.4

Q ss_pred             HHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHH
Q 046373          231 ILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVL  289 (364)
Q Consensus       231 Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A  289 (364)
                      |+++++..++..|..|+||||+|+..|+.+++++|++.   +++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~---g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQN---GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHC---T--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHC---cCCCCCCcCCCCCHHHhC
Confidence            45666444677788888888888888888888888866   888888888888888876

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.40  E-value=9.8e-13  Score=82.23  Aligned_cols=54  Identities=33%  Similarity=0.450  Sum_probs=28.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHH
Q 046373          117 KNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELL  171 (364)
Q Consensus       117 g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll  171 (364)
                      |.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din-~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN-AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            4556666666666666666666655544 33555666666666666666666553

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.39  E-value=1e-12  Score=82.11  Aligned_cols=54  Identities=39%  Similarity=0.615  Sum_probs=37.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHH
Q 046373           79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT  137 (364)
Q Consensus        79 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll  137 (364)
                      |.||||+|+..|+.+++++|++.+.+     ++..|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-----in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-----INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-----TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            56788888888888888888877755     6666778888888888888888888775

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=5e-12  Score=120.44  Aligned_cols=105  Identities=26%  Similarity=0.268  Sum_probs=91.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhc
Q 046373           82 PLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG  161 (364)
Q Consensus        82 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~  161 (364)
                      .|+.|+..|+.++++.|++.+++     ++..|..|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+..
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad-----in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD-----PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-LLDKDGKTPLELAEEN  158 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-----CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHC
Confidence            58889999999999999999876     67888999999999999999999999999999876 7788899999999999


Q ss_pred             CCHHHHHHHHHc-------CCCCCCCCCCCCChHHHHH
Q 046373          162 RYSEMVIELLEN-------CTSVSHEGPNGKTALHAAA  192 (364)
Q Consensus       162 ~~~~~v~~Ll~~-------~~~~~~~~~~~~~~l~~a~  192 (364)
                      ++.+++++|+++       |++.+..+..|.+|+..+.
T Consensus       159 g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        159 GFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999999988       7888877777776665544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=5.2e-13  Score=115.85  Aligned_cols=119  Identities=25%  Similarity=0.146  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHH
Q 046373           43 ILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALH  122 (364)
Q Consensus        43 ~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~  122 (364)
                      .|--|  +.-|..++|+-++..    -.+....++.|-|+||-|+..||.+||++|++.|++     ++..|.+|+||||
T Consensus       553 LLLDa--aLeGEldlVq~~i~e----v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan-----VNa~DSdGWTPLH  621 (752)
T KOG0515|consen  553 LLLDA--ALEGELDLVQRIIYE----VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN-----VNAADSDGWTPLH  621 (752)
T ss_pred             HHHhh--hhcchHHHHHHHHHh----hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc-----ccCccCCCCchhh
Confidence            34455  666777887777664    455667788899999999999999999999999877     7888999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHH--hcCCHHHHHHHHH
Q 046373          123 EAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAA--EGRYSEMVIELLE  172 (364)
Q Consensus       123 ~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~--~~~~~~~v~~Ll~  172 (364)
                      +|+..++..+++.|++.|+.+....-.++.|+..-|-  ..|..+|.++|..
T Consensus       622 CAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  622 CAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999999999988877665566788877763  4577888888875

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.34  E-value=1.4e-12  Score=81.95  Aligned_cols=56  Identities=36%  Similarity=0.430  Sum_probs=26.4

Q ss_pred             HHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHH
Q 046373          136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAA  191 (364)
Q Consensus       136 Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a  191 (364)
                      |+++++......|..|.||||+|+.+|+.+++++|++.|++++.++..|.||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            34555333446777777888888888888888888877778777777777777765

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.34  E-value=3.5e-12  Score=121.51  Aligned_cols=105  Identities=18%  Similarity=0.070  Sum_probs=94.2

Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcC
Q 046373          214 TALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIR  293 (364)
Q Consensus       214 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~  293 (364)
                      ..|+.|+..|+.+.++.|+++|++ ++..|..|+||||+|+..|+.+++++|++.   |++++.+|..|.||||+|+..+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~---Gadvn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEF---GADPTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHCC
Confidence            468899999999999999999998 588899999999999999999999999998   9999999999999999999999


Q ss_pred             Ccceeehhhhccc-------CCcccccccCCCchhHHh
Q 046373          294 PKEFFKIKVRYDA-------GGNYGAVNKQNVSVTDVL  324 (364)
Q Consensus       294 ~~~~~~~~ll~~~-------~~~~~~~n~~g~t~l~~a  324 (364)
                      +  ...+.+|+.+       |++.+..+..|.+|+..+
T Consensus       160 ~--~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        160 F--REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             c--HHHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            9  4555555556       888888899898887766

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=3.6e-12  Score=110.75  Aligned_cols=119  Identities=26%  Similarity=0.226  Sum_probs=94.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHh
Q 046373           81 TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE  160 (364)
Q Consensus        81 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  160 (364)
                      -.|.-|+..|.+++|+.++..-.+     ....+.+|.|+||-|+-.|+.+||++|++.|++++ ..|.+|+||||+|+.
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~D-----pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSdGWTPLHCAAS  625 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTD-----PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSDGWTPLHCAAS  625 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcC-----CCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCCCCchhhhhhh
Confidence            345668999999999999987754     67788899999999999999999999999999987 889999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCC-CCCCChHHHHHHh--hhhhcchhhhh
Q 046373          161 GRYSEMVIELLENCTSVSHEG-PNGKTALHAAAMH--FYFENDQTAAD  205 (364)
Q Consensus       161 ~~~~~~v~~Ll~~~~~~~~~~-~~~~~~l~~a~~~--~~~~~~~~~~~  205 (364)
                      .++.-+++.|++.|+.+.... .++.|+...+-..  ++..+.+++..
T Consensus       626 CNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  626 CNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             cCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            999999999999997765533 3455665543322  44444444433

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.29  E-value=5.7e-11  Score=95.85  Aligned_cols=109  Identities=20%  Similarity=0.212  Sum_probs=74.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHH
Q 046373           80 DTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAA  159 (364)
Q Consensus        80 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  159 (364)
                      ..||.-++..|+.+-...|+..-..     .+..|..|.|+|.-|+..|+.+++++|++.|++++...+..+.||||+|+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~-----vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQ-----VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhh-----hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence            4567777777777766666665332     56667777777777777777777777777777777666667777777777


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHH
Q 046373          160 EGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM  193 (364)
Q Consensus       160 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~  193 (364)
                      .+|+.++.++|++.|+.....+.-|+|+-..|+.
T Consensus        88 LSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAF  121 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAF  121 (396)
T ss_pred             HcCCchHHHHHHhccCccccccchhhhHHHHHHH
Confidence            7777777777777777666666655555555544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.29  E-value=7.9e-12  Score=100.71  Aligned_cols=120  Identities=18%  Similarity=0.163  Sum_probs=99.3

Q ss_pred             ChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccc-cCCCCCcHHHH
Q 046373            7 YPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQ-VNAKGDTPLHL   85 (364)
Q Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~g~t~L~~   85 (364)
                      .++|..++.+||.+....|++.- -..+..|..|.|+|..|  ++.|+.+.++.+++.    ++++|. .+..++||||.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~v-r~vn~~D~sGMs~LahA--aykGnl~~v~lll~~----gaDvN~~qhg~~YTpLmF   85 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTV-RQVNQRDPSGMSVLAHA--AYKGNLTLVELLLEL----GADVNDKQHGTLYTPLMF   85 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHh-hhhhccCCCcccHHHHH--HhcCcHHHHHHHHHh----CCCcCcccccccccHHHH
Confidence            46889999999999999988874 33567777999999999  999999999999887    776665 45678899999


Q ss_pred             HHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 046373           86 AAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK  138 (364)
Q Consensus        86 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~  138 (364)
                      |+..|+.++.+.|++.|+.     ....++-|+|+-.+|+--|+.+||..+-.
T Consensus        86 AALSGn~dvcrllldaGa~-----~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   86 AALSGNQDVCRLLLDAGAR-----MYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HHHcCCchHHHHHHhccCc-----cccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            9999999999999998876     56667888999999999998888877643

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.95  E-value=3.3e-10  Score=103.88  Aligned_cols=95  Identities=19%  Similarity=0.098  Sum_probs=82.8

Q ss_pred             HHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCC-CCCcHHHHHHhcCCcceeehhhhcc
Q 046373          227 TVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDN-NGNTPLHVLAAIRPKEFFKIKVRYD  305 (364)
Q Consensus       227 ~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~-~g~t~L~~A~~~~~~~~~~~~ll~~  305 (364)
                      +--++-+++..-.+.+|..|+|+||+++..+..++++||+++   |.+++.+|+ .|+||||-|+.+|+  +.++-+|+.
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh---Gidv~vqD~ESG~taLHRaiyyG~--idca~lLL~  107 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQH---GIDVFVQDEESGYTALHRAIYYGN--IDCASLLLS  107 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhc---CceeeeccccccchHhhHhhhhch--HHHHHHHHh
Confidence            444555666555678899999999999999999999999998   999999995 79999999999999  888888889


Q ss_pred             cCCcccccccCCCchhHHhhh
Q 046373          306 AGGNYGAVNKQNVSVTDVLIY  326 (364)
Q Consensus       306 ~~~~~~~~n~~g~t~l~~a~~  326 (364)
                      +|+.+.++|++|.+||+..++
T Consensus       108 ~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  108 KGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             cCCceEEecccCCCHHHHHhh
Confidence            999999999999999999866

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.76  E-value=1.1e-08  Score=94.11  Aligned_cols=84  Identities=20%  Similarity=0.161  Sum_probs=70.4

Q ss_pred             hhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHH
Q 046373          110 MRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALH  189 (364)
Q Consensus       110 ~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~  189 (364)
                      .+++|..|+|+||+++..+..++++||+++|.++.......|.||||-|+.+|+.+|+-.|+.+|...-+.|++|.+||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            56778888888888888888888888888888877555567888888888888888888888888888888888888888


Q ss_pred             HHHH
Q 046373          190 AAAM  193 (364)
Q Consensus       190 ~a~~  193 (364)
                      +.++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8776

>PF13606 Ank_3: Ankyrin repeat

Probab=98.72  E-value=2e-08  Score=53.57  Aligned_cols=28  Identities=39%  Similarity=0.442  Sum_probs=17.8

Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCCCC
Q 046373          151 GKTSLYMAAEGRYSEMVIELLENCTSVS  178 (364)
Q Consensus       151 ~~t~l~~A~~~~~~~~v~~Ll~~~~~~~  178 (364)
                      |+||||+|+..|+.+++++|+++|+++|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5666666666666666666666666654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.71  E-value=2e-08  Score=88.62  Aligned_cols=101  Identities=25%  Similarity=0.370  Sum_probs=87.5

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 046373           69 PSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSEN  148 (364)
Q Consensus        69 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~  148 (364)
                      +..+-..+.+..+.||+|+..|+-++|+|++++++.   .+++..+..|.|+||.|+..++-.+.++|++.|+.+. ..|
T Consensus       889 gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~---elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~-ktd  964 (1004)
T KOG0782|consen  889 GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS---ELLDMADETGETALHKAACQRNRAVCQLLVDAGASLR-KTD  964 (1004)
T ss_pred             CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH---HHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhhe-ecc
Confidence            556677788889999999999999999999999976   4467778899999999999999999999999999865 788


Q ss_pred             cCCchHHHHHHhcCCHHHHHHHHHc
Q 046373          149 KYGKTSLYMAAEGRYSEMVIELLEN  173 (364)
Q Consensus       149 ~~~~t~l~~A~~~~~~~~v~~Ll~~  173 (364)
                      ..|.||-.-|-+.|+.+...+|-..
T Consensus       965 ~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  965 SKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             cCCCChHHHHHhcCCchHHHHHhhh
Confidence            8899999999999999998888653

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.68  E-value=4.7e-08  Score=86.39  Aligned_cols=118  Identities=19%  Similarity=0.262  Sum_probs=61.1

Q ss_pred             HHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHc
Q 046373           10 FFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKF   89 (364)
Q Consensus        10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~   89 (364)
                      +..|+..+|+--+......| -+-..++.+..+.||+|  ++.|+.++++|++++  -.+..++..|+.|.|+||-|+..
T Consensus       870 il~av~~~D~~klqE~h~~g-g~ll~~~~~~~sllh~a--~~tg~~eivkyildh--~p~elld~~de~get~lhkaa~~  944 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNG-GSLLIQGPDHCSLLHYA--AKTGNGEIVKYILDH--GPSELLDMADETGETALHKAACQ  944 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcC-CceEeeCcchhhHHHHH--HhcCChHHHHHHHhc--CCHHHHHHHhhhhhHHHHHHHHh
Confidence            44555555544444444444 22334444555555555  555555555555553  22234444555555555555555


Q ss_pred             CCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHH
Q 046373           90 GHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT  137 (364)
Q Consensus        90 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll  137 (364)
                      ++..+.++|++.|+.     +...|..|.||-..|-+.|+.++..+|-
T Consensus       945 ~~r~vc~~lvdagas-----l~ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  945 RNRAVCQLLVDAGAS-----LRKTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             cchHHHHHHHhcchh-----heecccCCCChHHHHHhcCCchHHHHHh
Confidence            555555555555544     4445555555555555555555555554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.63  E-value=6.1e-08  Score=53.32  Aligned_cols=31  Identities=26%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 046373          151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEG  181 (364)
Q Consensus       151 ~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~  181 (364)
                      |.||||+|+..|+.+++++|+++|++++.++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            6677777777777777777777776666544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.61  E-value=6.7e-08  Score=51.52  Aligned_cols=27  Identities=41%  Similarity=0.615  Sum_probs=17.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 046373          117 KNTALHEAVCHGNVQVVKILTKQDPDY  143 (364)
Q Consensus       117 g~t~l~~a~~~~~~e~v~~Ll~~~~~~  143 (364)
                      |+||||+|+..|+.|++++|+++|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            566666666666666666666666554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.61  E-value=4.3e-08  Score=85.19  Aligned_cols=91  Identities=25%  Similarity=0.230  Sum_probs=69.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhCcccccccccCC-CCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHh-hh
Q 046373          249 FLHYAMVSFKLHELKILLKNPLARSLIYEGD-NNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVL-IY  326 (364)
Q Consensus       249 ~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d-~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a-~~  326 (364)
                      -||..+..++.+..-.|+..   |+++|..+ ..|.||||+|++.|+  ...+.+|+--|+|+...|.+|.||++|| ..
T Consensus       136 QLhasvRt~nlet~LRll~l---GA~~N~~hpekg~TpLHvAAk~Gq--~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~  210 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSL---GAQANFFHPEKGNTPLHVAAKAGQ--ILQAELLAVYGADPGAQDSSGMTPVDYARQG  210 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHc---ccccCCCCcccCCchhHHHHhccc--hhhhhHHhhccCCCCCCCCCCCcHHHHHHhc
Confidence            57888888888877777776   78887776 368888888888888  7777777777888888888888888888 66


Q ss_pred             cccceeeccccchHHhhh
Q 046373          327 GSRELTLSNVNFQEEVRN  344 (364)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~  344 (364)
                      |+.++.-..+.+.-++-+
T Consensus       211 gH~~laeRl~e~~y~vtD  228 (669)
T KOG0818|consen  211 GHHELAERLVEIQYELTD  228 (669)
T ss_pred             CchHHHHHHHHHHHHHHH
Confidence            666666666666665543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.56  E-value=3.5e-07  Score=85.21  Aligned_cols=118  Identities=18%  Similarity=0.095  Sum_probs=59.0

Q ss_pred             HHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCC
Q 046373           50 SQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGN  129 (364)
Q Consensus        50 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~  129 (364)
                      +..|+.-.++..++......-++|+.|.-|.++|++|+.+.+.+++++|+++...       .     ..+|.+|+..|.
T Consensus        33 ~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~-------~-----gdALL~aI~~~~  100 (822)
T KOG3609|consen   33 HENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE-------E-----GDALLLAIAVGS  100 (822)
T ss_pred             HHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc-------c-----chHHHHHHHHHH
Confidence            5555555555544432222334455555555555555555555555555554421       1     124555555555


Q ss_pred             HHHHHHHHhcCCCC---------CCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 046373          130 VQVVKILTKQDPDY---------PYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH  179 (364)
Q Consensus       130 ~e~v~~Ll~~~~~~---------~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  179 (364)
                      .++|+.++.+....         +...-..+.||+.+|+..++++|++.|++.|+.+..
T Consensus       101 v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  101 VPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            55555555542221         111222345666666666666666666666655433

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.51  E-value=5.1e-08  Score=84.37  Aligned_cols=122  Identities=16%  Similarity=0.166  Sum_probs=91.3

Q ss_pred             HHHHHhcCChHHhhhccCChhHHHh----hhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHH
Q 046373           10 FFNAAAAGDAETFKRNTTSDEIESL----LTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHL   85 (364)
Q Consensus        10 l~~A~~~g~~~~v~~ll~~~~~~~~----~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~   85 (364)
                      |..-.-..|.+.+.+--... +++.    .+..++...+.+|  ++.|+...++-+.-.    +.++++.|.+.+|+||.
T Consensus       473 Lvs~fNFHNYD~L~h~~~~K-~DPRR~~~~~~~~~~i~~~~a--a~~GD~~alrRf~l~----g~D~~~~DyD~RTaLHv  545 (622)
T KOG0506|consen  473 LVSKFNFHNYDSLRHPDNRK-IDPRREGGPRENDTVINVMYA--AKNGDLSALRRFALQ----GMDLETKDYDDRTALHV  545 (622)
T ss_pred             HHHHhcccCchhhccccccc-CCcccccCcccccchhhhhhh--hhcCCHHHHHHHHHh----cccccccccccchhhee
Confidence            33333444555554443321 2221    3334566788899  999998887765443    88899999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 046373           86 AAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPD  142 (364)
Q Consensus        86 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~  142 (364)
                      |+..|+.+++++|++.-..    +++.+|.+|+|||.-|...++.+++++|.+....
T Consensus       546 AAaEG~v~v~kfl~~~~kv----~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  546 AAAEGHVEVVKFLLNACKV----DPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQYP  598 (622)
T ss_pred             ecccCceeHHHHHHHHHcC----CCChhhccCCCcchHhHhcCcHHHHHHHHHHhcc
Confidence            9999999999999997543    3788999999999999999999999999886443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.50  E-value=6.8e-07  Score=77.94  Aligned_cols=88  Identities=19%  Similarity=0.163  Sum_probs=77.4

Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHH
Q 046373          153 TSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETIL  232 (364)
Q Consensus       153 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll  232 (364)
                      .-||.+++.|+.++.--|+..|+++|..+.                           +.|.||||.|++.|+.--+++|+
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hp---------------------------ekg~TpLHvAAk~Gq~~Q~ElL~  187 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHP---------------------------EKGNTPLHVAAKAGQILQAELLA  187 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCc---------------------------ccCCchhHHHHhccchhhhhHHh
Confidence            348999999999999999999999886554                           36899999999999999999999


Q ss_pred             hcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          233 FLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       233 ~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                      -.|+|+ ...|.+|.||+.+|-..|+-++.+.|++.
T Consensus       188 vYGAD~-~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  188 VYGADP-GAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             hccCCC-CCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            999994 88999999999999999998877766653

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.47  E-value=2.5e-07  Score=50.83  Aligned_cols=31  Identities=35%  Similarity=0.334  Sum_probs=15.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCcccccccccCC
Q 046373          246 GWNFLHYAMVSFKLHELKILLKNPLARSLIYEGD  279 (364)
Q Consensus       246 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d  279 (364)
                      |+||||+|+..++.+++++|+++   |++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~---ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKH---GADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHT---TSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHC---cCCCCCCC
Confidence            45555555555555555555554   44444443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.46  E-value=8.2e-07  Score=82.83  Aligned_cols=130  Identities=16%  Similarity=0.135  Sum_probs=104.0

Q ss_pred             ChhHHHHHhcCChHHhhhccCCh---hHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHH
Q 046373            7 YPNFFNAAAAGDAETFKRNTTSD---EIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPL   83 (364)
Q Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L   83 (364)
                      +..+..|+..||+-.|++.++..   ..+.++.|.-|.++|+.|  +...+.++.++|+++    +..      . ..+|
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~ia--i~nenle~~eLLl~~----~~~------~-gdAL   92 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIA--IDNENLELQELLLDT----SSE------E-GDAL   92 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecc--cccccHHHHHHHhcC----ccc------c-chHH
Confidence            45788999999999999999874   255678999999999999  999999999999885    211      1 3699


Q ss_pred             HHHHHcCCHHHHHHHHHHhhHHHhHh-----hhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCc
Q 046373           84 HLAAKFGHSNIVSFLIERAKLAAWQM-----MRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENK  149 (364)
Q Consensus        84 ~~A~~~~~~~~v~~Ll~~~~~~~~~~-----~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~  149 (364)
                      .+|+..|..+.|+.++.+.....+..     ....-..+.||+.+||..++.||++.|+++|..++..-+.
T Consensus        93 L~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~  163 (822)
T KOG3609|consen   93 LLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDI  163 (822)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCccc
Confidence            99999999999999999865421111     1123345789999999999999999999999987755443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.40  E-value=3.3e-07  Score=79.48  Aligned_cols=94  Identities=26%  Similarity=0.240  Sum_probs=83.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHH
Q 046373           77 AKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLY  156 (364)
Q Consensus        77 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~  156 (364)
                      .++.-++++|+..|+...++.+.-.+.+     +...|++.+|+||.|+..|+.+++++|++.-...+...|+.|.|||.
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D-----~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlD  578 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMD-----LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLD  578 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhccc-----ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcch
Confidence            3456789999999999999998888866     88899999999999999999999999999766656789999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCC
Q 046373          157 MAAEGRYSEMVIELLENCT  175 (364)
Q Consensus       157 ~A~~~~~~~~v~~Ll~~~~  175 (364)
                      -|..-+|.+++++|-+...
T Consensus       579 dA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  579 DAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HhHhcCcHHHHHHHHHHhc
Confidence            9999999999999987653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.32  E-value=1.4e-06  Score=76.97  Aligned_cols=87  Identities=29%  Similarity=0.380  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHH
Q 046373           43 ILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALH  122 (364)
Q Consensus        43 ~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~  122 (364)
                      |+|++  +.....+..+..+..  +-...++..|..|.||||+|+..|+.+.++.|+..+++     ...++..|++|||
T Consensus        23 ~lh~~--~~~~~~~sl~~el~~--~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-----v~~kN~~gWs~L~   93 (560)
T KOG0522|consen   23 PLHWA--VVTTDSDSLEQELLA--KVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-----VSIKNNEGWSPLH   93 (560)
T ss_pred             ccchh--hhccchhhHHHHHhh--hhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-----ccccccccccHHH
Confidence            35555  555544444443332  12334555555566666666666666666666665554     4555556666666


Q ss_pred             HHHHcCCHHHHHHHHh
Q 046373          123 EAVCHGNVQVVKILTK  138 (364)
Q Consensus       123 ~a~~~~~~e~v~~Ll~  138 (364)
                      .|+..|+.+++..++.
T Consensus        94 EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   94 EAVSTGNEQIITEVLR  109 (560)
T ss_pred             HHHHcCCHHHHHHHHH
Confidence            6666666555554443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.29  E-value=3.3e-07  Score=80.71  Aligned_cols=79  Identities=23%  Similarity=0.258  Sum_probs=43.9

Q ss_pred             HHHHHHhcCCHHHHHHHHhcC-CcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcC
Q 046373          215 ALHLAAGQGHARTVETILFLD-PKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIR  293 (364)
Q Consensus       215 ~L~~a~~~~~~~~~~~Ll~~~-~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~  293 (364)
                      |+|.++.....+-+..++... ...+..+|..|+||||.|+..|+.+.++.|+..   ++++..+|..|++|||.|+..|
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a---~Adv~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA---GADVSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc---CCCccccccccccHHHHHHHcC
Confidence            356655554444333333221 222444555666666666666666666666665   6666666666666666666666


Q ss_pred             Ccc
Q 046373          294 PKE  296 (364)
Q Consensus       294 ~~~  296 (364)
                      +.+
T Consensus       100 ~~q  102 (560)
T KOG0522|consen  100 NEQ  102 (560)
T ss_pred             CHH
Confidence            633

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.29  E-value=2.7e-06  Score=75.74  Aligned_cols=93  Identities=22%  Similarity=0.210  Sum_probs=78.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhc
Q 046373           82 PLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG  161 (364)
Q Consensus        82 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~  161 (364)
                      -|.-|+...+...+-+||.+|.... ......+.+|.|+||+|+..|++.+.++|+=+|.++. ..|..|.|+|+||-+.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e-~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~-~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREE-VNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM-ARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchh-hhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce-ecccCCchhhhhHhhc
Confidence            4667888888888889999886521 1123345678999999999999999999999999865 8899999999999999


Q ss_pred             CCHHHHHHHHHcCCC
Q 046373          162 RYSEMVIELLENCTS  176 (364)
Q Consensus       162 ~~~~~v~~Ll~~~~~  176 (364)
                      |..+|+..|+++|..
T Consensus       705 ~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  705 GSQECIDVLLQYGCP  719 (749)
T ss_pred             ccHHHHHHHHHcCCC
Confidence            999999999999954

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.23  E-value=1.4e-06  Score=77.47  Aligned_cols=66  Identities=24%  Similarity=0.218  Sum_probs=48.7

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 046373           72 LLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPD  142 (364)
Q Consensus        72 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~  142 (364)
                      ...-+.+|.|+||+||..|+..+.++|+-++.+     ....|..|.|+|.||-+.|.-||+..|+++|..
T Consensus       654 ~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-----v~~rda~g~t~l~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  654 ETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-----VMARDAHGRTALFYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             ccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-----ceecccCCchhhhhHhhcccHHHHHHHHHcCCC
Confidence            334455677777777777777777777777765     566777777888777777777777777777664

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.16  E-value=3.6e-06  Score=71.21  Aligned_cols=56  Identities=21%  Similarity=0.321  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhH
Q 046373           43 ILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKL  104 (364)
Q Consensus        43 ~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  104 (364)
                      -|+.|  ++.|..+.+++|++.    +.++|..|....+||.+|+.+||.++|++|+++|+.
T Consensus        39 elcea--cR~GD~d~v~~LVet----gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   39 ELCEA--CRAGDVDRVRYLVET----GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHH--hhcccHHHHHHHHHh----CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            48899  999999999999997    899999999999999999999999999999999984

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.08  E-value=1.1e-05  Score=61.79  Aligned_cols=68  Identities=26%  Similarity=0.201  Sum_probs=46.8

Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 046373           70 SLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDP  141 (364)
Q Consensus        70 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~  141 (364)
                      .++|..|..|+|+++.|+..|+.+.+.||+.+|...    +...|..+.++..+|-+.|..++++.|.+...
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~----vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF----VGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCccc----ccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            356667777777777777777777777777777321    55667777777777777777777777776533

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.95  E-value=3.2e-05  Score=65.61  Aligned_cols=57  Identities=23%  Similarity=0.259  Sum_probs=34.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 046373           82 PLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDY  143 (364)
Q Consensus        82 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~  143 (364)
                      -|..||..|+.+.|++|++.|.+     ++..|....+||.+|+..|+..++++|+++|+-.
T Consensus        39 elceacR~GD~d~v~~LVetgvn-----VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVN-----VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCC-----cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            45566666666666666665543     5556666666666666666666666666666543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.94  E-value=9.4e-06  Score=77.86  Aligned_cols=75  Identities=23%  Similarity=0.230  Sum_probs=47.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHh
Q 046373          245 RGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVL  324 (364)
Q Consensus       245 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a  324 (364)
                      .|.|++|.|+.++...+++.|++.   ++++|..|..|+||||.+...|+  .....+++.+|++.+..+..|.+|+++|
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~---ga~vn~~d~~g~~plh~~~~~g~--~~~~~~ll~~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQN---GADVNALDSKGRTPLHHATASGH--TSIACLLLKRGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhc---CCcchhhhccCCCcchhhhhhcc--cchhhhhccccccccccCccCcchhhHH
Confidence            455666666666666666666665   66666666666666666666666  4455555556666666666666666666

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.90  E-value=1.1e-05  Score=77.55  Aligned_cols=90  Identities=23%  Similarity=0.222  Sum_probs=79.5

Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHH
Q 046373          210 DRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVL  289 (364)
Q Consensus       210 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A  289 (364)
                      ..|.++||.|+..+..-++++|++.|++ ++..|..|+||+|.+...|+......++++   +++.+..+..|.+||++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~---~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKR---GADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhccc---cccccccCccCcchhhHH
Confidence            3678999999999999999999999999 799999999999999999999999999997   999999999999999999


Q ss_pred             HhcCCcceeehhhh
Q 046373          290 AAIRPKEFFKIKVR  303 (364)
Q Consensus       290 ~~~~~~~~~~~~ll  303 (364)
                      ....+.+..-++.+
T Consensus       730 ~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  730 MEAANADIVLLLRL  743 (785)
T ss_pred             hhhccccHHHHHhh
Confidence            88865333333333

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.82  E-value=6.9e-05  Score=57.55  Aligned_cols=81  Identities=19%  Similarity=0.153  Sum_probs=67.3

Q ss_pred             hhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCC--CCCCh
Q 046373          110 MRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGP--NGKTA  187 (364)
Q Consensus       110 ~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~--~~~~~  187 (364)
                      ++..|..|+|+++.|+..|+.+.+.||+.+|.......|..+.+.+.+|-+.|..++++.|.+.--+-...+.  .+.++
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss~~e~l   84 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSSRDEAL   84 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccCCCCCcc
Confidence            7889999999999999999999999999999766778999999999999999999999999987544433333  33444


Q ss_pred             HHH
Q 046373          188 LHA  190 (364)
Q Consensus       188 l~~  190 (364)
                      +++
T Consensus        85 fyC   87 (223)
T KOG2384|consen   85 FYC   87 (223)
T ss_pred             chh
Confidence            444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.61  E-value=6.9e-05  Score=71.94  Aligned_cols=101  Identities=19%  Similarity=0.066  Sum_probs=75.4

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHH-hhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCc
Q 046373           71 LLLQVNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENK  149 (364)
Q Consensus        71 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~  149 (364)
                      ........|++.+|+++..+..-++..+++- +..     ....|..|.-.+|+|+. +..+..-+++.....-...+|.
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~-----~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~~ai~i~D~  639 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG-----DLELDRDGQGVIHFCAA-LGYEWAFLPISADGVAIDIRDR  639 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccC-----chhhcccCCChhhHhhh-cCCceeEEEEeecccccccccC
Confidence            3455667889999999999998888888885 433     45567777888888554 4556555555543333447888


Q ss_pred             CCchHHHHHHhcCCHHHHHHHHHcCCCC
Q 046373          150 YGKTSLYMAAEGRYSEMVIELLENCTSV  177 (364)
Q Consensus       150 ~~~t~l~~A~~~~~~~~v~~Ll~~~~~~  177 (364)
                      .|+||||+|+..|+..++..|.+.|++.
T Consensus       640 ~G~tpL~wAa~~G~e~l~a~l~~lga~~  667 (975)
T KOG0520|consen  640 NGWTPLHWAAFRGREKLVASLIELGADP  667 (975)
T ss_pred             CCCcccchHhhcCHHHHHHHHHHhcccc
Confidence            9999999999999999999999887554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.47  E-value=7.7e-05  Score=71.62  Aligned_cols=128  Identities=18%  Similarity=0.093  Sum_probs=95.4

Q ss_pred             hhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHH-HHhhHHHhHhhhcC
Q 046373           35 LTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLI-ERAKLAAWQMMRMT  113 (364)
Q Consensus        35 ~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~  113 (364)
                      .....|++.+|++  +..+....++.+++.   .+......|.+|...+|. |..++.+..-+++ -.+..     ++++
T Consensus       569 ~~~~r~~lllhL~--a~~lyawLie~~~e~---~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~a-----i~i~  637 (975)
T KOG0520|consen  569 SVNFRDMLLLHLL--AELLYAWLIEKVIEW---AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVA-----IDIR  637 (975)
T ss_pred             cCCCcchHHHHHH--HHHhHHHHHHHHhcc---cccCchhhcccCCChhhH-hhhcCCceeEEEEeecccc-----cccc
Confidence            4556889999999  999988888888773   134455667777888888 4455555544443 33322     7889


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC-----CCCcCCchHHHHHHhcCCHHHHHHHHHc
Q 046373          114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPY-----SENKYGKTSLYMAAEGRYSEMVIELLEN  173 (364)
Q Consensus       114 ~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~-----~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  173 (364)
                      |..|+||||+|+..|+..++..|++-|..-..     .....|.|+-..|-..|+..+.-+|.+.
T Consensus       638 D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  638 DRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999999999999976554222     2233688999999999999988888765

>smart00248 ANK ankyrin repeats

Probab=96.81  E-value=0.0027  Score=32.69  Aligned_cols=26  Identities=38%  Similarity=0.455  Sum_probs=14.4

Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCC
Q 046373          151 GKTSLYMAAEGRYSEMVIELLENCTS  176 (364)
Q Consensus       151 ~~t~l~~A~~~~~~~~v~~Ll~~~~~  176 (364)
                      |.||+++|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44555555555555555555555543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.53  E-value=0.038  Score=42.82  Aligned_cols=141  Identities=12%  Similarity=0.075  Sum_probs=80.7

Q ss_pred             ChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHH
Q 046373            7 YPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLA   86 (364)
Q Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A   86 (364)
                      +-.|.-|++.|-+.+++++-+.. .  ... ...++.+..|  |+..+.|++.|+-+.+.-         .+-.+.+.+|
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L-~--~~~-~~~q~LFElA--C~~qkydiV~WI~qnL~i---------~~~~~iFdIA  111 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDL-E--NER-YLNQELFELA--CEEQKYDIVKWIGQNLHI---------YNPEDIFDIA  111 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHh-h--cch-hHHHHHHHHH--HHHccccHHHHHhhccCC---------CCchhhhhhh
Confidence            34566777777777777665543 1  111 2556777777  788888888887553211         1223556667


Q ss_pred             HHcCCHHHHH----HHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcC
Q 046373           87 AKFGHSNIVS----FLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGR  162 (364)
Q Consensus        87 ~~~~~~~~v~----~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~  162 (364)
                      ...++.++..    +++++......  . ....--..-|..|+..|-...+.-.+++|.++.       .++|..|+.++
T Consensus       112 ~~~kDlsLyslGY~l~~~~~~~~~~--~-d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-------~~vls~Av~yn  181 (192)
T PF03158_consen  112 FAKKDLSLYSLGYKLLFNRMMSEHN--E-DPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-------IIVLSQAVKYN  181 (192)
T ss_pred             hhccchhHHHHHHHHHHhhcccccc--c-CHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-------HHHHHHHHHhh
Confidence            7777665411    11111100000  0 000000123567788888887777777777653       37888888888


Q ss_pred             CHHHHHHHHH
Q 046373          163 YSEMVIELLE  172 (364)
Q Consensus       163 ~~~~v~~Ll~  172 (364)
                      +..++.+++.
T Consensus       182 hRkIL~yfi~  191 (192)
T PF03158_consen  182 HRKILDYFIR  191 (192)
T ss_pred             HHHHHHHhhc
Confidence            8888877764

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=96.51  E-value=0.0058  Score=31.34  Aligned_cols=25  Identities=40%  Similarity=0.557  Sum_probs=14.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCC
Q 046373          117 KNTALHEAVCHGNVQVVKILTKQDP  141 (364)
Q Consensus       117 g~t~l~~a~~~~~~e~v~~Ll~~~~  141 (364)
                      |.||+|+|+..++.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4556666666666666666665544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.19  E-value=0.0034  Score=55.69  Aligned_cols=42  Identities=17%  Similarity=0.029  Sum_probs=26.2

Q ss_pred             CCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhh
Q 046373          282 GNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLI  325 (364)
Q Consensus       282 g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~  325 (364)
                      -.|+||+|+..|.  ..++..+++.|+|+..+|..|+||++++.
T Consensus       430 tsT~LH~aa~qg~--~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGA--RKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcch--HHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3456666666666  55555555666666666666666666654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.17  E-value=0.009  Score=53.15  Aligned_cols=65  Identities=18%  Similarity=0.128  Sum_probs=52.1

Q ss_pred             CHHHHHHHHhcCCCCCC-----CCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHH
Q 046373          129 NVQVVKILTKQDPDYPY-----SENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM  193 (364)
Q Consensus       129 ~~e~v~~Ll~~~~~~~~-----~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~  193 (364)
                      -+..+.+|.+++.+.+.     ..+....|+||+|+..|...+|.+|++.|.|+...|..|+||...+..
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccccc
Confidence            46677788887665432     223346799999999999999999999999999999999999887653

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.07  E-value=0.059  Score=41.77  Aligned_cols=137  Identities=15%  Similarity=0.094  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHH
Q 046373           43 ILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALH  122 (364)
Q Consensus        43 ~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~  122 (364)
                      .|..|  ++++...++++..+.+...       -..+++.+-.||...+.++|+|+-++-          .-.+-.+.+.
T Consensus        49 Ll~HA--Vk~nmL~ILqkyke~L~~~-------~~~~q~LFElAC~~qkydiV~WI~qnL----------~i~~~~~iFd  109 (192)
T PF03158_consen   49 LLYHA--VKYNMLSILQKYKEDLENE-------RYLNQELFELACEEQKYDIVKWIGQNL----------HIYNPEDIFD  109 (192)
T ss_pred             HHHHH--HHcCcHHHHHHHHHHhhcc-------hhHHHHHHHHHHHHccccHHHHHhhcc----------CCCCchhhhh
Confidence            45555  6666666666666543211       123456667777777777777774332          1223345566


Q ss_pred             HHHHcCCHHHHH----HHHhcCCCCCCCCCc--CCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhh
Q 046373          123 EAVCHGNVQVVK----ILTKQDPDYPYSENK--YGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFY  196 (364)
Q Consensus       123 ~a~~~~~~e~v~----~Ll~~~~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  196 (364)
                      .|....+.++..    ++.++..+. ...|.  --..-|..|+..|-...+.-.++.|-++                   
T Consensus       110 IA~~~kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~-------------------  169 (192)
T PF03158_consen  110 IAFAKKDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNV-------------------  169 (192)
T ss_pred             hhhhccchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc-------------------
Confidence            677666666533    122221111 00000  0012255667777777666666666543                   


Q ss_pred             hhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHh
Q 046373          197 FENDQTAADIADKDRKMTALHLAAGQGHARTVETILF  233 (364)
Q Consensus       197 ~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~  233 (364)
                                     ..++|..|++.++..++.+++.
T Consensus       170 ---------------~~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  170 ---------------DIIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             ---------------cHHHHHHHHHhhHHHHHHHhhc
Confidence                           2367778888888888777764

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.55  E-value=0.062  Score=43.04  Aligned_cols=95  Identities=14%  Similarity=0.176  Sum_probs=66.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHc--CCHHHHHHHHhcCCCCC---CCCCcCCchH
Q 046373           80 DTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCH--GNVQVVKILTKQDPDYP---YSENKYGKTS  154 (364)
Q Consensus        80 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~--~~~e~v~~Ll~~~~~~~---~~~~~~~~t~  154 (364)
                      .+++.+|+.++..+++.+|+.+.....+.......  +.--+.|+...  .+..++++++++|...+   ...-..|.|-
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~--~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEK--ELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhcCc--chhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            57899999889999999999876431111111111  22234454443  36788999999875432   2334579999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCC
Q 046373          155 LYMAAEGRYSEMVIELLENCTS  176 (364)
Q Consensus       155 l~~A~~~~~~~~v~~Ll~~~~~  176 (364)
                      |.-|+.+++.+++.+|+++|+-
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCcc
Confidence            9999999999999999999974

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.62  E-value=0.13  Score=41.28  Aligned_cols=122  Identities=12%  Similarity=0.104  Sum_probs=83.6

Q ss_pred             hHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHH
Q 046373            9 NFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAK   88 (364)
Q Consensus         9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~   88 (364)
                      .|-.|++.-+++.+..+.... .       .-.+++-+|  ..++..+++-+|+....-...++-... .+..-+-++..
T Consensus       156 sledAV~AsN~~~i~~~VtdK-k-------dA~~Am~~s--i~~~K~dva~~lls~f~ft~~dv~~~~-~~~ydieY~LS  224 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK-K-------DAHQAMWLS--IGNAKEDVALYLLSKFNFTKQDVASME-KELYDIEYLLS  224 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch-H-------HHHHHHHHH--hcccHHHHHHHHHhhcceecchhhhcC-cchhhHHHHHh
Confidence            456788888888887776653 1       335678888  888888999999885432222222211 13334455544


Q ss_pred             cC--CHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 046373           89 FG--HSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPD  142 (364)
Q Consensus        89 ~~--~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~  142 (364)
                      ..  +..++++++++|......- -..-..|.|.|.-|+++++.|++..|+++|+.
T Consensus       225 ~h~a~~kvL~~Fi~~Glv~vN~~-F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  225 EHSASYKVLEYFINRGLVDVNKK-FQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hcCCcHHHHHHHHhccccccchh-hhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            43  5779999999986432221 22345799999999999999999999999974

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.49  E-value=0.19  Score=33.37  Aligned_cols=45  Identities=27%  Similarity=0.360  Sum_probs=21.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHc
Q 046373          121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN  173 (364)
Q Consensus       121 l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~  173 (364)
                      +..|+..|+.|+++.+++.+..        ....+..|+...+-++++||++.
T Consensus        10 l~~Ai~GGN~eII~~c~~~~~~--------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen   10 LEYAIIGGNFEIINICLKKNKP--------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHhCCCHHHHHHHHHHhcc--------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            4455555555555555543210        12345555555555555555553

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.95  E-value=0.39  Score=31.89  Aligned_cols=48  Identities=21%  Similarity=0.279  Sum_probs=38.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 046373           80 DTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQ  139 (364)
Q Consensus        80 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~  139 (364)
                      ...+..|+..|+.|+++.+++.+..         +   ...+..|+...+.++++||++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~---------~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP---------D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc---------H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            3567899999999999999876522         1   3468899999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=89.76  E-value=13  Score=32.53  Aligned_cols=124  Identities=7%  Similarity=0.026  Sum_probs=55.9

Q ss_pred             hHHHHHhcCChHHhhhccCC--hhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHH
Q 046373            9 NFFNAAAAGDAETFKRNTTS--DEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLA   86 (364)
Q Consensus         9 ~l~~A~~~g~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A   86 (364)
                      .+..+.+.++.+....+++.  +.+.....+..|.-.+-..  ...+..+....+++.+. +....-..+..|...+..+
T Consensus        24 ~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~--l~~~~~~~~~~i~~~~~-~~~~~l~~~~~g~~vlqkl  100 (322)
T cd07920          24 FLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKL--FEHGTEEQRLQLLEKIL-GHVVRLSLDMYGCRVIQKL  100 (322)
T ss_pred             HHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHH--HHhCCHHHHHHHHHHHH-HHHHHHcccchhHHHHHHH
Confidence            34445555555555555554  1132335555566666555  55555555555544432 1111123444555555555


Q ss_pred             HHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHH
Q 046373           87 AKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT  137 (364)
Q Consensus        87 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll  137 (364)
                      ...+..+-...+++.-...  ...-..|..|...+..+....+.+..+.++
T Consensus       101 l~~~~~~~~~~i~~~l~~~--~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~  149 (322)
T cd07920         101 LESISEEQISLLVKELRGH--VVELVKDQNGNHVIQKCIEKFPPEDLQFII  149 (322)
T ss_pred             HHhcCHHHHHHHHHHHHHC--HHHHhhcccccHHHHHHHHhCCHHHHHHHH
Confidence            5554433333333322111  112234555555555555555444444433

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	364
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-12
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-10
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-06
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-05
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		9e-10
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-09
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-05
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-08
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-08
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-08
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-05
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-08
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-04
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-08
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-08
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		5e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		7e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-06
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		7e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		6e-04
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-04
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-07
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		5e-07
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		6e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-06
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-06
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		7e-06
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-05
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		3e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-05
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		3e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		4e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-05
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		5e-05
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		5e-05
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		5e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		5e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		5e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		6e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		8e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-04
1uoh_A	226	Human Gankyrin Length = 226		1e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		3e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		5e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		5e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		6e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		8e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
           G TPLHLAA+ GH  +V  L+E     A   +   +    T LH A  +G+++VVK+L +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE-----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
              D   +++K G+T L++AA   + E+V  LLE    V+ +  NG+T LH AA + + E
Sbjct: 57  AGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 6/119 (5%)
Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
           T LH A  +G+++VVK+L +   D   +++K G+T L++AA   + E+V  LLE    V+
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 179 HEGPNGKTALHAAAMHFYFEND----QTAADIADKDRK-MTALHLAAGQGHARTVETIL 232
            +  NG+T LH AA + + E      +  AD+  KD+   T LHLAA  GH   V+ +L
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEND----QTAADI 206
           G+T L++AA   + E+V  LLE    V+ +  NG+T LH AA + + E      +  AD+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 207 ADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKIL 265
             KD+   T LHLAA  GH   V+ +L          D  G   LH A  +  L  +K+L
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLL 120
Query: 266 LK 267
           L+
Sbjct: 121 LE 122

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 183 NGKTALHAAAMHFYFEND----QTAADIADKDRK-MTALHLAAGQGHARTVETILFLDPK 237
           NG+T LH AA + + E      +  AD+  KD+   T LHLAA  GH   V+ +L     
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 238 CYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEF 297
                D  G   LH A  +  L  +K+LL+   A + +   D NG TPLH+  A R    
Sbjct: 61  VNA-KDKNGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHL--AARNGHL 114
Query: 298 FKIKVRYDAG 307
             +K+  +AG
Sbjct: 115 EVVKLLLEAG 124

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 120/274 (43%), Gaps = 43/274 (15%)
Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIE-RAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
           N K +TPLH+AA+ GH+ +  +L++ +AK+ A         +  T LH A   G+  +VK
Sbjct: 44  NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA------KDDQTPLHCAARIGHTNMVK 97
Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
           +L + + + P      G T L++AA   + E V+ LLE   S +     G T LH AA +
Sbjct: 98  LLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 156
Query: 195 -------FYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGW 247
                     E D  A   A     +T LH+A    H   ++ +  L P+         W
Sbjct: 157 GKVRVAELLLERD--AHPNAAGKNGLTPLHVAV---HHNNLDIVKLLLPRGGS-PHSPAW 210
Query: 248 NFLHYAMVSFKLHELKILLKNPLARSLI-YEGDNN-----GNTPLHVLAAIRPKEFFKIK 301
           N      ++ K +++++      ARSL+ Y G  N     G TPLH+ A     E   + 
Sbjct: 211 NGYTPLHIAAKQNQVEV------ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Query: 302 VRYDAGGNYG----------AVNKQNVSVTDVLI 325
           +   A GN G             + +V V DVLI
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
           ++ G TPLHLAA+ GH  +V  L+ +            +++  T LH A  +G+ +VVK+
Sbjct: 34  DSDGKTPLHLAAENGHKEVVKLLLSQG-----ADPNAKDSDGKTPLHLAAENGHKEVVKL 88
Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHF 195
           L  Q  D P +++  GKT L++AAE  + E+V  LL      +    +G+T L  A  H 
Sbjct: 89  LLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHG 147
Query: 196 YFE 198
             E
Sbjct: 148 NEE 150

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 155 LYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE------NDQTAADIAD 208
           L  AAE    + V +LLEN   V+    +GKT LH AA + + E      +     +  D
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 209 KDRKMTALHLAAGQGHARTVETILF--LDPKCYELVDHRGWNFLHYAMVSFKLHELKILL 266
            D K T LHLAA  GH   V+ +L    DP      D  G   LH A  +     +K+LL
Sbjct: 68  SDGK-TPLHLAAENGHKEVVKLLLSQGADPNAK---DSDGKTPLHLAAENGHKEVVKLLL 123
Query: 267 KNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKI 300
                 +     D++G TPL +      +E  K+
Sbjct: 124 SQGADPNT---SDSDGRTPLDLAREHGNEEVVKL 154

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 13/195 (6%)
Query: 61  IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
           + E+L   PSLLLQ +  G  PLH +  F    I SFL+  +K+    +    ++   T 
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGWTP 75
Query: 121 LHEAVCHGNVQVVKILTKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
            H A   GN++VVK L  +   PD     N+ G T L++A   ++ E+   L+EN  SV 
Sbjct: 76  FHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASVR 134
Query: 179 HEGPNGKTALHAAA-------MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETI 231
            +    +  LH AA       +       ++A +  DK +  T L  A  +GH      +
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLL 193
Query: 232 LFLDPKCYELVDHRG 246
           +      Y+LVD++G
Sbjct: 194 VEKYGAEYDLVDNKG 208

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 13/195 (6%)
Query: 61  IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
           + E+L   PSLLLQ +  G  PLH +  F    I SFL+  +K+    +    ++   T 
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGWTP 75
Query: 121 LHEAVCHGNVQVVKILTKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
            H A   GN++VVK L  +   PD     N+ G T L++A   ++ E+   L+EN  SV 
Sbjct: 76  FHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASVR 134
Query: 179 HEGPNGKTALHAAA-------MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETI 231
            +    +  LH AA       +       ++A +  DK +  T L  A  +GH      +
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLL 193
Query: 232 LFLDPKCYELVDHRG 246
           +      Y+LVD++G
Sbjct: 194 VEKYGAEYDLVDNKG 208

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 13/195 (6%)
Query: 61  IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
           + E+L   PSLLLQ +  G  PLH +  F    I SFL+  +K+    +    ++   T 
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGWTP 75
Query: 121 LHEAVCHGNVQVVKILTKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
            H A   GN++VVK L  +   PD     N+ G T L++A   ++ E+   L+EN  SV 
Sbjct: 76  FHIACSVGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASVR 134
Query: 179 HEGPNGKTALHAAA-------MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETI 231
            +    +  LH AA       +       ++A +  DK +  T L  A  +GH      +
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLL 193
Query: 232 LFLDPKCYELVDHRG 246
           +      Y+LVD++G
Sbjct: 194 VEKYGAEYDLVDNKG 208

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 74  QVNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
            VNA+   G TPLHLAA FGH  IV  L++  A + A   + +      T LH A   G+
Sbjct: 39  DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGV------TPLHLAARRGH 92
Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
           +++V++L K   D   S++ +G T L++AA+  + E+V  LL+N   V+ +   GKTA 
Sbjct: 93  LEIVEVLLKNGADVNASDS-HGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAF 150

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
           L EA   G    V+IL     D   + +  G T L++AA   + E+V  LL+N   V+ +
Sbjct: 18  LLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADI-ADKDRKMTALHLAAGQGHARTVETIL 232
              G T LH AA   + E  +      AD+ A      T LHLAA +GH   VE +L
Sbjct: 77  DSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL 133

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 78  KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
           +G TPLHLAA  GH  IV  L++         +   + +  T LH A  +G++++V++L 
Sbjct: 46  QGSTPLHLAAWIGHPEIVEVLLKHGA-----DVNARDTDGWTPLHLAADNGHLEIVEVLL 100
Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
           K   D   +++ YG T L++AA+  + E+V  LL++   V+ +   GKTA 
Sbjct: 101 KYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
           L EA   G    V+IL     D    +++ G T L++AA   + E+V  LL++   V+  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQ-GSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDR-KMTALHLAAGQGHARTVETIL 232
             +G T LH AA + + E  +      AD+  +D   +T LHLAA +GH   VE +L
Sbjct: 77  DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 9/117 (7%)
Query: 74  QVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
            VNA+   GDTPLHLAA+ GH  IV  L++    A    +  +    +T LH A   G++
Sbjct: 39  DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG--ADVNALDFSG---STPLHLAAKRGHL 93
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
           ++V++L K   D   +++  G T L++AA+  + E+V  LL+    V+ +   GKTA
Sbjct: 94  EIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTA 149

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
           L EA   G    V+IL     D   +E+ YG T L++AA   + E+V  LL+N   V+  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADI-ADKDRKMTALHLAAGQGHARTVETIL 232
             +G T LH AA   + E  +      AD+ AD     T LHLAA  GH   VE +L
Sbjct: 77  DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLL 133

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 8/113 (7%)
Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
           +A G TPLHLAA +GH  IV  L++  A + A  +M       +T LH A   G++++V+
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM------GSTPLHLAALIGHLEIVE 97
Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
           +L K   D   + + +G T L++AA   + E+V  LL++   V+ +   GKTA
Sbjct: 98  VLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
           ++ G TPLH AA+ GH  +V  LI +        +   +++  T LH A  +G+ +VVK+
Sbjct: 34  DSDGRTPLHHAAENGHKEVVKLLISKG-----ADVNAKDSDGRTPLHHAAENGHKEVVKL 88
Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHF 195
           L  +  D   +++  G+T L+ AAE  + E+V  L+     V+    +G+T L  A  H 
Sbjct: 89  LISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHG 147
Query: 196 YFE 198
             E
Sbjct: 148 NEE 150

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 123 EAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGP 182
           EA  +GN   VK L +   D   S++  G+T L+ AAE  + E+V  L+     V+ +  
Sbjct: 10  EAAENGNKDRVKDLIENGADVNASDSD-GRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 183 NGKTALHAAAMHFYFENDQ----TAADIADKDRK-MTALHLAAGQGHARTVETIL 232
           +G+T LH AA + + E  +      AD+  KD    T LH AA  GH   V+ ++
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 11/118 (9%)
Query: 74  QVNAKGD---TPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
            VNA+ D   TPLHLAA  GH  IV  L++  A + A   M       +T LH A  +G+
Sbjct: 39  DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM------GDTPLHLAALYGH 92
Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
           +++V++L K   D   ++  YG T L++AA+  + E+V  LL+    V+ +   GKTA
Sbjct: 93  LEIVEVLLKNGADVNATDT-YGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTA 149

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
           L EA   G    V+IL     D   +E+  GKT L++AA   + E+V  LL++   V+  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDR-KMTALHLAAGQGHARTVETIL 232
              G T LH AA++ + E  +      AD+   D    T LHLAA  GH   VE +L
Sbjct: 77  DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLL 133

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
           ++ G TPLH AA+ GH  IV  L+ +            +++  T LH A  +G+ ++VK+
Sbjct: 34  DSDGRTPLHYAAENGHKEIVKLLLSKG-----ADPNAKDSDGRTPLHYAAENGHKEIVKL 88
Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHF 195
           L  +  D P +++  G+T L+ AAE  + E+V  LL      +    +G+T L  A  H 
Sbjct: 89  LLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHG 147
Query: 196 YFE 198
             E
Sbjct: 148 NEE 150

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 123 EAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGP 182
           EA  +GN   VK L +   D P + +  G+T L+ AAE  + E+V  LL      + +  
Sbjct: 10  EAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 183 NGKTALHAAAMHFYFENDQ----TAADIADKDRK-MTALHLAAGQGHARTVETIL 232
           +G+T LH AA + + E  +      AD   KD    T LH AA  GH   V+ +L
Sbjct: 69  DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 123

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
           ++ G TPLH AAK GH  IV  LI +        +   +++  T LH A   G+ ++VK+
Sbjct: 34  DSDGRTPLHYAAKEGHKEIVKLLISKG-----ADVNAKDSDGRTPLHYAAKEGHKEIVKL 88
Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
           L  +  D   +++  G+T L+ AA+  + E+V  L+     V+    +G+T L  A  H
Sbjct: 89  LISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREH 146

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
Query: 155 LYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQ----TAADIADKD 210
           L  AAE    + V +L+EN   V+    +G+T LH AA   + E  +      AD+  KD
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 211 RK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNP 269
               T LH AA +GH   V+ +L          D  G   LHYA        +K+L+   
Sbjct: 68  SDGRTPLHYAAKEGHKEIVK-LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 270 LARSLIYEGDNNGNTPLHVLAAIRPKEFFKI 300
              + +   D++G TPL +      +E  K+
Sbjct: 127 ---ADVNTSDSDGRTPLDLAREHGNEEIVKL 154

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 26/172 (15%)
Query: 65  LKKCPSLLLQVNA---KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTAL 121
           L K P+  L VN     G +PLH+AA  G ++++  L++    A  +     N ++   L
Sbjct: 69  LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGAR-----NADQAVPL 123
Query: 122 HEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEG 181
           H A   G+ QVVK L   +   P  ++  G T L  A  G + E+V  LL++  S++   
Sbjct: 124 HLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 182 PNGKTALHAAAM--HFYF---------------ENDQTAADIADKDRKMTAL 216
             G TALH A +  H +                +  +TA D A+++ K+  L
Sbjct: 183 NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMEL 234

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 79  GDTPLHLAAKFGHSNIVSFLIE-RAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
           G TPLHLAAK GH  IV  L++  A + AW      +N   T LH A  +G++++V++L 
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGADVNAW------DNYGATPLHLAADNGHLEIVEVLL 100
Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
           K   D   +++  G T L++AA   + E+V  LL+    V+ +   GKTA 
Sbjct: 101 KHGADVN-AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 9/117 (7%)
Query: 74  QVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
            VNAK   G TPLHLAA+ GH  IV  L     L A   +   + +  T LH A   G++
Sbjct: 39  DVNAKDKDGYTPLHLAAREGHLEIVEVL-----LKAGADVNAKDKDGYTPLHLAAREGHL 93
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
           ++V++L K   D   +++K G T L++AA   + E+V  LL+    V+ +   GKTA
Sbjct: 94  EIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTA 149

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 203 AADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHE 261
            AD+  KD+   T LHLAA +GH   VE +L          D  G+  LH A     L  
Sbjct: 37  GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEI 95
Query: 262 LKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVT 321
           +++LLK   A + +   D +G TPLH+  A R      ++V   AG +  A +K   +  
Sbjct: 96  VEVLLK---AGADVNAKDKDGYTPLHL--AAREGHLEIVEVLLKAGADVNAQDKFGKTAF 150
Query: 322 DVLIYGSRE 330
           D+ I    E
Sbjct: 151 DISIDNGNE 159

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
           G TPLHLAA+ GH  +V  L+E     A   +   +    T LH A  +G+++VVK+L +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE-----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
              D   +++K G+T L++AA   + E+V  LLE
Sbjct: 57  AGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
           T LH A  +G+++VVK+L +   D   +++K G+T L++AA   + E+V  LLE    V+
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 179 HEGPNGKTALHAAAMHFYFE 198
            +  NG+T LH AA + + E
Sbjct: 63  AKDKNGRTPLHLAARNGHLE 82

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEND----QTAADI 206
           G+T L++AA   + E+V  LLE    V+ +  NG+T LH AA + + E      +  AD+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 207 ADKDRK-MTALHLAAGQGHARTVETIL 232
             KD+   T LHLAA  GH   V+ +L
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
           +A G TPLHLAA +GH  IV  L++         +   +   +T LH A   G++++V++
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGA-----DVNAIDIXGSTPLHLAALIGHLEIVEV 98
Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
           L K   D   + + +G T L++AA   + E+V  LL++   V+ +   GKTA
Sbjct: 99  LLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 9/116 (7%)
Query: 74  QVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
            VNAK   G TPLHLAA+ GH  IV  L     L A   +   + +  T LH A   G++
Sbjct: 27  DVNAKDKDGYTPLHLAAREGHLEIVEVL-----LKAGADVNAKDKDGYTPLHLAAREGHL 81
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKT 186
           ++V++L K   D   +++K G T L++AA   + E+V  LL+    V+ +   GKT
Sbjct: 82  EIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 204 ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHEL 262
           AD+  KD+   T LHLAA +GH   VE +L          D  G+  LH A     L  +
Sbjct: 26  ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIV 84
Query: 263 KILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTD 322
           ++LLK   A + +   D +G TPLH+  A R      ++V   AG +  A +K   +  D
Sbjct: 85  EVLLK---AGADVNAKDKDGYTPLHL--AAREGHLEIVEVLLKAGADVNAQDKFGKTPFD 139
Query: 323 VLIYGSRE 330
           + I    E
Sbjct: 140 LAIREGHE 147

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 9/116 (7%)
Query: 74  QVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
            VNAK   G TPLHLAA+ GH  IV  L     L A   +   + +  T LH A   G++
Sbjct: 27  DVNAKDKDGYTPLHLAAREGHLEIVEVL-----LKAGADVNAKDKDGYTPLHLAAREGHL 81
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKT 186
           ++V++L K   D   +++K G T L++AA   + E+V  LL+    V+ +   GKT
Sbjct: 82  EIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 204 ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHEL 262
           AD+  KD+   T LHLAA +GH   VE +L          D  G+  LH A     L  +
Sbjct: 26  ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIV 84
Query: 263 KILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTD 322
           ++LLK   A + +   D +G TPLH+  A R      ++V   AG +  A +K   +  D
Sbjct: 85  EVLLK---AGADVNAKDKDGYTPLHL--AAREGHLEIVEVLLKAGADVNAQDKFGKTPFD 139
Query: 323 VLIYGSRE 330
           + I    E
Sbjct: 140 LAIDNGNE 147

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AADI 206
           GK  L  AA G+  E+ I L+ N   V+    NG T LH AA +   E  +      AD+
Sbjct: 7   GKKLLEAAAAGQDDEVRI-LMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV 65
Query: 207 ADKDRK-MTALHLAAGQGHARTVETIL--FLDPKCYELVDHRGWNFLHYAMVSFKLHELK 263
              D   +T LHLAA  GH   VE +L    D   Y   D  GW  LH A +S +L  ++
Sbjct: 66  NASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY---DRAGWTPLHLAALSGQLEIVE 122
Query: 264 ILLK 267
           +LLK
Sbjct: 123 VLLK 126

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
           G TPLH+AA  GH  IV  L+          +   +    T LH A   G++++V++L K
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLLRNGA-----DVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
              D   +++  G T LY+AA   + E+V  LL++   V+ +   GKTA 
Sbjct: 90  YGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAF 138

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
           L EA   G    V+IL     D   + + YG+T L+MAA   + E+V  LL N   V+  
Sbjct: 6   LLEAARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDRK-MTALHLAAGQGHARTVETIL 232
             NG T LH AA   + E  +      AD+  KD   +T L+LAA  GH   VE +L
Sbjct: 65  DTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 79  GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
           G TPLHLAA  GH  IV  L++  A + A  +  +      T LH A   G++++V++L 
Sbjct: 47  GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGI------TPLHLAAATGHLEIVEVLL 100
Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
           K   D    +N  G T L++AA+  + E+V  LL++   V+ +   GKTA
Sbjct: 101 KHGADVNAYDND-GHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTA 149

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
           L EA   G    V+IL     D   ++N  G T L++AA   + E+V  LL+N   V+  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDND-GYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDRK-MTALHLAAGQGHARTVETIL 232
              G T LH AA   + E  +      AD+   D    T LHLAA  GH   VE +L
Sbjct: 77  DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL 133

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 8/111 (7%)
Query: 79  GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
           G TPLHLAA FGH  IV  L++  A + A   + +      T LH A   G+++VV++L 
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV------TPLHLAADRGHLEVVEVLL 100
Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
           K   D   +++  G T L++AA   + E+V  LL++   V+ +   GKTA 
Sbjct: 101 KNGADVNANDHN-GFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AADI 206
           GK  L  A  G+  E+ I L+ N   V+     G T LH AA   + E  +      AD+
Sbjct: 15  GKKLLEAARAGQDDEVRI-LMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV 73
Query: 207 -ADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKIL 265
            AD    +T LHLAA +GH   VE +L  +       DH G+  LH A     L  +++L
Sbjct: 74  NADDSLGVTPLHLAADRGHLEVVE-VLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVL 132
Query: 266 LK 267
           LK
Sbjct: 133 LK 134

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
           G TPLHLAA  GH  IV  L++         +  ++    T LH A   G++++V++L K
Sbjct: 47  GTTPLHLAAYSGHLEIVEVLLKHGA-----DVDASDVFGYTPLHLAAYWGHLEIVEVLLK 101
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
              D    ++  G T L++AA+  Y E+V  LL++   V+ +   GKTA 
Sbjct: 102 NGADVNAMDSD-GMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
           L EA   G    V+IL     D   ++N  G T L++AA   + E+V  LL++   V   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAADNT-GTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDRK-MTALHLAAGQGHARTVETIL 232
              G T LH AA   + E  +      AD+   D   MT LHLAA  G+   VE +L
Sbjct: 77  DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 79  GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
           G TPLHLAA +GH  IV  L++  A + A+  +       +T LH A   G++++V++L 
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL------GSTPLHLAAHFGHLEIVEVLL 100
Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
           K   D    ++  G T L++AA   + E+V  LL+    V+ +   GKTA 
Sbjct: 101 KNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
           L EA   G    V+IL     D   ++   G T L++AA   + E+V  LL+N   V+  
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAAD-VVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADI-ADKDRKMTALHLAAGQGHARTVETIL 232
              G T LH AA   + E  +      AD+ A  D  +T LHLAA +GH   VE +L
Sbjct: 77  DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLL 133

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 32/159 (20%)
Query: 65  LKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKL-------AAWQMM------- 110
           L K  +L+   +A+G T LHLAAK GH  +V +L+   ++         W  M       
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 111 ---------------RMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL 155
                           + +NE+N  LH A   G V + +IL     D  ++ N +G + L
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPL 181
Query: 156 YMAA-EGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM 193
           ++AA E RY + V+  L   + V+ +   G+T L  A++
Sbjct: 182 HIAARENRY-DCVVLFLSRDSDVTLKNKEGETPLQCASL 219

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 78  KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
           KG+TPLHLAA + H  IV  L++         +   +N+ +T LH A   G++++V++L 
Sbjct: 46  KGNTPLHLAADYDHLEIVEVLLKHGA-----DVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
           K   D   +++K+GKT+  ++ +   +E + E+L+
Sbjct: 101 KHGADV-NAQDKFGKTAFDISID-NGNEDLAEILQ 133

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
           +A G TPLHLAA  GH  IV  L++         +   ++   T L  A   G++++V++
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNG-----ADVNAVDHAGMTPLRLAALFGHLEIVEV 98
Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
           L K   D   + +  G T L++AA   + E+V  LL+N   V+ +   GKTA
Sbjct: 99  LLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
           G +PLHLAA++GH +    L+ RA ++     ++      T LH A   G+  +V++L K
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKV----DRTPLHMAASEGHANIVEVLLK 88
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
              D   +++    T+L+ A E  + E+V  L++    V  +    KTA 
Sbjct: 89  HGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 137

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
           G TPLHL    GH  I+  L++ A       +  ++    T LH A   G++++V++L K
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAA-----DVNASDKSGWTPLHLAAYRGHLEIVEVLLK 101
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
              D    + + G T L++AAE  + E+V  LL+    V+ +   GKTA 
Sbjct: 102 YGADVNAMDYQ-GYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
           V+  G TPLHLAA  GH  IV  L++  A + A  +         T LH A   G++++V
Sbjct: 43  VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGF------TPLHLAAMTGHLEIV 96
Query: 134 KILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
           ++L K   D   + +  G T L++AA+  + E+V  LL+    V+ +   GKTA 
Sbjct: 97  EVLLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
           L EA   G    V+IL     D    +N  G T L++AA   + E+V  LL++   V   
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNT-GLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 181 GPNGKTALHAAAMHFYFENDQT----AADIADKDRK-MTALHLAAGQGHARTVETIL 232
              G T LH AAM  + E  +      AD+   D    T LHLAA +GH   VE +L
Sbjct: 77  DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 10  FFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILH-------INIISQKRKNGSTKFIG 62
              AA AGD ET K+  T   +        ++T LH       ++++    ++G+     
Sbjct: 16  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA----- 70
Query: 63  EMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
                       V+AK   G  PLH A  +GH  +   L++        ++ + +  K T
Sbjct: 71  -----------DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG-----AVVNVADLWKFT 114
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG 161
            LHEA   G  ++ K+L +   D P  +N+ G T L +  +G
Sbjct: 115 PLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDG 155

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 10  FFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILH-------INIISQKRKNGSTKFIG 62
              AA AGD ET K+  T   +        ++T LH       ++++    ++G+     
Sbjct: 12  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA----- 66
Query: 63  EMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
                       V+AK   G  PLH A  +GH  +   L++        ++ + +  K T
Sbjct: 67  -----------DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG-----AVVNVADLWKFT 110
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG 161
            LHEA   G  ++ K+L +   D P  +N+ G T L +  +G
Sbjct: 111 PLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDG 151

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 78  KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQ-MMRMTNNEKNTALHEAVCHGNVQVVKIL 136
           +G+TPLHLA + G    V  L +         +++ TN   +T LH A  HG + +V++L
Sbjct: 74  RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 133
Query: 137 TKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
                D    E   G+T+L++A + +  ++V  LL+
Sbjct: 134 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 32/162 (19%)
Query: 10  FFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILH-------INIISQKRKNGSTKFIG 62
              AA AGD ET K+  T   +        ++T LH       ++++    ++G+     
Sbjct: 14  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA----- 68
Query: 63  EMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
                       V+AK   G  PLH A  +GH  +   L++        ++ + +  K T
Sbjct: 69  -----------DVHAKDKGGLVPLHNACSYGHYEVAELLVKHG-----AVVNVADLWKFT 112
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG 161
            LHEA   G  ++ K+L +   D P  +N+ G T L +  +G
Sbjct: 113 PLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDG 153

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 61  IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA 120
           I + + +  SL  Q +  G+T LHLAA++  S+    L+E +  A  Q     +N   T 
Sbjct: 4   ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQ-----DNMGRTP 58
Query: 121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE 180
           LH AV      V +IL +       +    G T L +AA      M+ +L+ +   V+  
Sbjct: 59  LHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAV 118
Query: 181 GPNGKTALH 189
              GK+ALH
Sbjct: 119 DDLGKSALH 127

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKN---TALHEAVCHGNVQ 131
           ++  G TPLHLAA+ GH  IV  L++             N E N   T LH A   G+++
Sbjct: 43  LDEDGLTPLHLAAQLGHLEIVEVLLKYGA--------DVNAEDNFGITPLHLAAIRGHLE 94
Query: 132 VVKILTKQDPDYPYSENKYGKTSLYMAAE 160
           +V++L K   D   +++K+GKT+  ++ +
Sbjct: 95  IVEVLLKHGADV-NAQDKFGKTAFDISID 122

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 10/150 (6%)
Query: 49  ISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQ 108
           I Q    G    + E L+K  +L+ + + +G TPL  A+ FG    V FL+E      W 
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE------WG 59
Query: 109 M-MRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDY-PYSENKYGKTSLYMAAEGRYSEM 166
               +   E+ +AL  A   G   +V +L ++D D   Y  N  G T L  A  G + + 
Sbjct: 60  ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVRGNHVKC 117
Query: 167 VIELLENCTSVSHEGPNGKTALHAAAMHFY 196
           V  LL     ++ E  +G T +  A    Y
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAVALGY 147

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
           G TPLHLAA  GH  IV  L++         +  T N   T LH A    ++++V++L K
Sbjct: 47  GHTPLHLAAMLGHLEIVEVLLKNGA-----DVNATGNTGRTPLHLAAWADHLEIVEVLLK 101
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
              D   +++K+GKT+  ++ +   +E + E+L+
Sbjct: 102 HGADVN-AQDKFGKTAFDISID-NGNEDLAEILQ 133

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 10/178 (5%)
Query: 60  FIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
            I + + +  SL  Q +  G+T LHLAA++  S+    L+E +  A  Q     +N   T
Sbjct: 38  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-----DNMGRT 92
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH 179
            LH AV      V +IL +       +    G T L +AA      M+ +L+ +   V+ 
Sbjct: 93  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152
Query: 180 EGPNGKTALH-AAAMHFYFENDQTAADIADKD----RKMTALHLAAGQGHARTVETIL 232
               GK+ALH AAA++          + A+KD    R+ T L LAA +G   T + +L
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 60  FIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
            I + + +  SL  Q +  G+T LHLAA++  S+    L+E +  A  Q     +N   T
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-----DNMGRT 60
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH 179
            LH AV      V +IL +       +    G T L +AA      M+ +L+ +   V+ 
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120
Query: 180 EGPNGKTALH 189
               GK+ALH
Sbjct: 121 VDDLGKSALH 130

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 10/178 (5%)
Query: 60  FIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
            I + + +  SL  Q +  G+T LHLAA++  S+    L+E +  A  Q     +N   T
Sbjct: 39  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-----DNMGRT 93
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH 179
            LH AV      V +IL +       +    G T L +AA      M+ +L+ +   V+ 
Sbjct: 94  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 153
Query: 180 EGPNGKTALH-AAAMHFYFENDQTAADIADKD----RKMTALHLAAGQGHARTVETIL 232
               GK+ALH AAA++          + A+KD    R+ T L LAA +G   T + +L
Sbjct: 154 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 211

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 78  KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQ-MMRMTNNEKNTALHEAVCHGNVQVVKIL 136
           +G+TPLHLA + G    V  L +         +++ TN   +T LH A  HG + +V++L
Sbjct: 77  RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136
Query: 137 TKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
                D    E   G+T+L++A + +  ++V  LL+
Sbjct: 137 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 10/150 (6%)
Query: 49  ISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQ 108
           I Q    G    + E L+K  +L+ + + +G TPL  A+ FG    V FL+E      W 
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE------WG 59
Query: 109 M-MRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDY-PYSENKYGKTSLYMAAEGRYSEM 166
               +   E+ +AL  A   G   +V +L ++D D   Y  N  G T L  A  G + + 
Sbjct: 60  ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVHGNHVKC 117
Query: 167 VIELLENCTSVSHEGPNGKTALHAAAMHFY 196
           V  LL     ++ E  +G T +  A    Y
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAVALGY 147

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 44/158 (27%)
Query: 45  HINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKL 104
           H++++ Q  K G+           PSL   ++ +G + +HLAA+FGH++IV++LI + + 
Sbjct: 88  HLSMVVQLMKYGAD----------PSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 105 A-----------AWQMMR----------MTNN---------EKNTALHEAVCHGNVQVVK 134
                        W   R          +T N          KNTALH AV  GN  V+ 
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
           +L +   +   ++N  G+++L +A + +   M+  L E
Sbjct: 195 LLLEAGANVD-AQNIKGESALDLAKQRKNVWMINHLQE 231

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 46/223 (20%)
Query: 70  SLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA----LHEAV 125
           SL  + +    T LH A   GH+ IV FL++         + +  N+K+ A    LH A 
Sbjct: 31  SLATRTDQDSRTALHWACSAGHTEIVEFLLQ---------LGVPVNDKDDAGWSPLHIAA 81
Query: 126 CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
             G  ++VK L  +   +  + N+ G T L+ AA     E+ + LLE   +     P+ K
Sbjct: 82  SAGRDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-----PDAK 135
Query: 186 TALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHR 245
                   H+                  TA+H AA +G+ + V  +LF       + D  
Sbjct: 136 D-------HY----------------DATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTE 171
Query: 246 GWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
           G   LH A    ++ E K L+    +   IY  +    TPL V
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGAS---IYIENKEEKTPLQV 211

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 200 DQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKL 259
           D++ A   D+D + TALH A   GH   VE +L L     +  D  GW+ LH A  + + 
Sbjct: 29  DKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRD 86
Query: 260 HELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKI----------KVRYDAGGN 309
             +K LL   +  + +   + NG TPLH  A+    E   +          K  YDA   
Sbjct: 87  EIVKALL---VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143
Query: 310 YGAVNKQNVSVTDVLIY 326
           + A  K N+ +  +L++
Sbjct: 144 HRAAAKGNLKMVHILLF 160

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 46/223 (20%)
Query: 70  SLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA----LHEAV 125
           SL  + +    T LH A   GH+ IV FL++         + +  N+K+ A    LH A 
Sbjct: 31  SLATRTDQDSRTALHWACSAGHTEIVEFLLQ---------LGVPVNDKDDAGWSPLHIAA 81
Query: 126 CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
             G  ++VK L  +   +  + N+ G T L+ AA     E+ + LLE   +     P+ K
Sbjct: 82  SAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-----PDAK 135
Query: 186 TALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHR 245
                   H+                  TA+H AA +G+ + V  +LF       + D  
Sbjct: 136 D-------HY----------------DATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTE 171
Query: 246 GWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
           G   LH A    ++ E K L+    +   IY  +    TPL V
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGAS---IYIENKEEKTPLQV 211

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 200 DQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKL 259
           D++ A   D+D + TALH A   GH   VE +L L     +  D  GW+ LH A  +   
Sbjct: 29  DKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGXD 86
Query: 260 HELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKI----------KVRYDAGGN 309
             +K LL   +  + +   + NG TPLH  A+    E   +          K  YDA   
Sbjct: 87  EIVKALL---VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143
Query: 310 YGAVNKQNVSVTDVLIY 326
           + A  K N+ +  +L++
Sbjct: 144 HRAAAKGNLKMVHILLF 160

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 46/223 (20%)
Query: 70  SLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA----LHEAV 125
           SL  + +    T LH A   GH+ IV FL++         + +  N+K+ A    LH A 
Sbjct: 32  SLATRTDQDSRTALHWACSAGHTEIVEFLLQ---------LGVPVNDKDDAGWSPLHIAA 82
Query: 126 CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
             G  ++VK L  +      + N+ G T L+ AA     E+ + LLE   +     P+ K
Sbjct: 83  SAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-----PDAK 136
Query: 186 TALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHR 245
                   H+                + TA+H AA +G+ + +  +L+       + D  
Sbjct: 137 D-------HY----------------EATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTE 172
Query: 246 GWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
           G   LH A    ++ E K+L+    +   IY  +    TPL V
Sbjct: 173 GNTPLHLACDEERVEEAKLLVSQGAS---IYIENKEEKTPLQV 212

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 17/112 (15%)
Query: 34  LLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAK---GDTPLHLAAKFG 90
           +  ++  NT LH        KNG  + + ++L K       VNA+   G+TPLHLAAK G
Sbjct: 3   MWGSKDGNTPLH-----NAAKNGHAEEVKKLLSKGA----DVNARSKDGNTPLHLAAKNG 53
Query: 91  HSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPD 142
           H+ IV  L     LA    +   + + NT  H A  +G+ ++VK+L  +  D
Sbjct: 54  HAEIVKLL-----LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
           G+TPLH AAK GH+  V  L+ +        +   + + NT LH A  +G+ ++VK+L  
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKG-----ADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
           +  D   + +K G T  ++A +  + E +++LL+
Sbjct: 64  KGADV-NARSKDGNTPEHLAKKNGHHE-IVKLLD 95

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 46/223 (20%)
Query: 70  SLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA----LHEAV 125
           SL  + +    T LH A   GH+ IV FL++         + +  N+K+ A    LH A 
Sbjct: 31  SLATRTDQDSRTALHWACSAGHTEIVEFLLQ---------LGVPVNDKDDAGWSPLHIAA 81
Query: 126 CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
             G  ++VK L  +      + N+ G T L+ AA     E+ + LLE   +     P+ K
Sbjct: 82  SAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-----PDAK 135
Query: 186 TALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHR 245
                   H+                + TA+H AA +G+ + +  +L+       + D  
Sbjct: 136 D-------HY----------------EATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTE 171
Query: 246 GWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
           G   LH A    ++ E K+L+    +   IY  +    TPL V
Sbjct: 172 GNTPLHLACDEERVEEAKLLVSQGAS---IYIENKEEKTPLQV 211

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 74  QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
           + +  GDTPLH+A   G+   V  L+   +    + + + NN + T LH AV      VV
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVV 62
Query: 134 KILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCT--SVSHEGPN--GKTALH 189
           ++L       P + +++G+T+ ++A E R    +  LL++    ++  E  N  G TALH
Sbjct: 63  RLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 190 AA 191
            A
Sbjct: 122 VA 123

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 74  QVNAKGD---TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
            VNA  D   TPLHLAAK GH  IV  L++         +  +++   T LH A   G++
Sbjct: 39  DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-----DVNASDSWGRTPLHLAATVGHL 93
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMA 158
           ++V++L +   D   +++K+GKT+  ++
Sbjct: 94  EIVEVLLEYGADV-NAQDKFGKTAFDIS 120

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 10/178 (5%)
Query: 60  FIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
            I + + +  SL  Q +  G T LHLAA +  S+    L+E +  A  Q     +N   T
Sbjct: 38  VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQ-----DNMGRT 92
Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH 179
            LH AV      V +IL +       +    G T L +AA      M+ +L+ +   V+ 
Sbjct: 93  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152
Query: 180 EGPNGKTALH-AAAMHFYFENDQTAADIADKD----RKMTALHLAAGQGHARTVETIL 232
               GK+ALH AAA++          + A+KD    R+ T L LAA +G   T + +L
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 51  QKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMM 110
           +  ++ + + I ++L +   L   ++  G+T LHLAA+F  ++    L++    A  Q  
Sbjct: 23  ENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQ-- 80
Query: 111 RMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIEL 170
              +N   T LH AV    + V +IL +       +    G T L +AA      MV +L
Sbjct: 81  ---DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 137
Query: 171 LENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADI---------ADKDRKMTALHLAAG 221
           +     ++    +GKTALH AA      N+  A +I         A  D+  T L LAA 
Sbjct: 138 ITADADINAADNSGKTALHWAAA----VNNTEAVNILLMHHANRDAQDDKDETPLFLAAR 193
Query: 222 QG 223
           +G
Sbjct: 194 EG 195

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 74  QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
           Q  A G+T LH+AA + +      L+E A    ++ M     E  TALH AV + NV +V
Sbjct: 32  QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLV 91
Query: 134 KILTKQDPDY------------PYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEG 181
           + L  +                P++   YG+  L  AA     E+V  L+E+   +  + 
Sbjct: 92  RALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQD 151
Query: 182 PNGKTALH 189
             G T LH
Sbjct: 152 SLGNTVLH 159

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 74  QVNAKGD---TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
            VNA  D   TPLHLAAK GH  IV  L++         +  ++    T LH A   G++
Sbjct: 39  DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-----DVNASDIWGRTPLHLAATVGHL 93
Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAE 160
           ++V++L +   D   +++K+GKT+  ++ +
Sbjct: 94  EIVEVLLEYGADV-NAQDKFGKTAFDISID 122

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 11/91 (12%)
Query: 74  QVNAKGD---TPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
            VNA  D   TPLHLAAK GH  IV  L++  A + A  +         T LH A   G+
Sbjct: 39  DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW------GRTPLHLAATVGH 92
Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAE 160
           +++V++L +   D   +++K+GKT+  ++ +
Sbjct: 93  LEIVEVLLEYGADV-NAQDKFGKTAFDISID 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	364
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-31
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-30
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-32
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-28
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-31
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-25
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-26
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-30
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-24
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-29
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-29
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-22
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-29
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-27
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-27
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-26
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-24
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-18
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-24
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-09
2rfa_A	232	Transient receptor potential cation channel subfa	1e-23
2rfa_A	232	Transient receptor potential cation channel subfa	1e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-18
2etb_A	256	Transient receptor potential cation channel subfam	3e-20
2etb_A	256	Transient receptor potential cation channel subfam	8e-14
2etb_A	256	Transient receptor potential cation channel subfam	9e-14
2etb_A	256	Transient receptor potential cation channel subfam	6e-08
2etb_A	256	Transient receptor potential cation channel subfam	5e-07
2pnn_A	273	Transient receptor potential cation channel subfa	4e-20
2pnn_A	273	Transient receptor potential cation channel subfa	6e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-20
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  127 bits (322), Expect = 2e-33
 Identities = 71/237 (29%), Positives = 101/237 (42%), Gaps = 36/237 (15%)

Query: 71  LLLQ----VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALH 122
           LLL+     N     G TPLH+AA+ GH   V  L+E+ A  A          +  T LH
Sbjct: 98  LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLH 151

Query: 123 EAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGP 182
            A  +G V+V ++L ++D   P +  K G T L++A      ++V  LL    S      
Sbjct: 152 VAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 210

Query: 183 NGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETILFL 234
           NG T LH AA     E    A            +  + +T LHLAA +GHA  V   L L
Sbjct: 211 NGYTPLHIAAKQNQVE---VARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA--LLL 265

Query: 235 DPKCY-ELVDHRGWNFLHYAMVSFKLHE--LKILLKNPLARSLIYEGDNNGNTPLHV 288
             +    L +  G   LH    + + H     +L+K+     ++      G TPLHV
Sbjct: 266 SKQANGNLGNKSGLTPLHLV--AQEGHVPVADVLIKH---GVMVDATTRMGYTPLHV 317

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  121 bits (307), Expect = 3e-31
 Identities = 69/233 (29%), Positives = 96/233 (41%), Gaps = 31/233 (13%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
                  G TPLH+A+  GH  IV  L++R A          +N +  T LH A   G+ 
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNV------SNVKVETPLHMAARAGHT 60

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHA 190
           +V K L +       ++ K  +T L+ AA   ++ MV  LLEN  + +     G T LH 
Sbjct: 61  EVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 119

Query: 191 AAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELV 242
           AA   + E   T        A  A   +K  T LH+AA  G  R  E +L  D       
Sbjct: 120 AAREGHVE---TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAA 175

Query: 243 DHRGWNFLHYAMVSFKLHE--LKILLKNPLARSLIYEGDNNGNTPLHVLAAIR 293
              G   LH A      +   +K+LL         +    NG TPLH +AA +
Sbjct: 176 GKNGLTPLHVA--VHHNNLDIVKLLLPR---GGSPHSPAWNGYTPLH-IAAKQ 222

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  120 bits (303), Expect = 1e-30
 Identities = 51/232 (21%), Positives = 84/232 (36%), Gaps = 35/232 (15%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
            ++    G TPLH+AAK     +   L++      A       + +  T LH A   G+ 
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA------ESVQGVTPLHLAAQEGHA 258

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHA 190
           ++V +L  +  +     NK G T L++ A+  +  +   L+++   V      G T LH 
Sbjct: 259 EMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 317

Query: 191 AAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETILFL----DPKC 238
           A+ +   +            AD+  K +   + LH AA QGH   V   L L     P  
Sbjct: 318 ASHYGNIK---LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT--LLLKNGASP-- 370

Query: 239 YELVDHRGWNFLHYAMVSFKLHE--LKILLKNPLARSLIYEGDNNGNTPLHV 288
              V   G   L  A      +     +L       S +   D +  +    
Sbjct: 371 -NEVSSDGTTPLAIA--KRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPET 419

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  116 bits (293), Expect = 6e-31
 Identities = 51/222 (22%), Positives = 79/222 (35%), Gaps = 46/222 (20%)

Query: 37  AQTKN--TILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAK---GDTPLHLAAKFGH 91
             T++  + LH+ II     +       E++++    L  +N +     TPLHLA     
Sbjct: 3   QLTEDGDSFLHLAII-----HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 57

Query: 92  SNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSE--- 147
             I   L+               +   NT LH A   G +  V +LT+            
Sbjct: 58  PEIAEALLGAGCDPEL------RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111

Query: 148 --NKYGKTSLYMAAEGRYSEMVIELLENCTSVSH-------EGPNGKTALHAAAMHFYFE 198
             N  G T L++A+   Y  +V ELL     VS        E  NG+TALH A      +
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIV-ELL-----VSLGADVNAQEPCNGRTALHLAVDL---Q 162

Query: 199 NDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETIL 232
           N           AD+     +  +   L  G+   R  + + 
Sbjct: 163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG 204

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  100 bits (251), Expect = 7e-25
 Identities = 51/240 (21%), Positives = 76/240 (31%), Gaps = 68/240 (28%)

Query: 74  QVNAKGDTPLHLAAKFGHSN----IVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHG 128
           Q+   GD+ LHLA           ++  +    A L         NN + T LH AV   
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF------QNNLQQTPLHLAVITN 56

Query: 129 NVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGP------ 182
             ++ + L     D P   +  G T L++A E      V  L ++CT+            
Sbjct: 57  QPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY 115

Query: 183 NGKTALHAAAMHFYFENDQTA-------ADIADKDRK--MTALHLAAGQGHARTVETILF 233
           NG T LH A++H Y              AD+  ++     TALHLA    +   V     
Sbjct: 116 NGHTCLHLASIHGYLG---IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL--- 169

Query: 234 LDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIR 293
                  L+   G +                          +      G +P   L   R
Sbjct: 170 -------LLKC-GAD--------------------------VNRVTYQGYSPYQ-LTWGR 194

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 99.2 bits (248), Expect = 1e-24
 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 15/167 (8%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
              +   G+TPLHLA + G    V  L +         +++ TN   +T LH A  HG +
Sbjct: 71  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHA 190
            +V++L     D    E   G+T+L++A + +  ++V  LL+    V+     G +    
Sbjct: 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190

Query: 191 AAMHFYFENDQTA-------ADIADKDRKM-TALHLAAGQGHARTVE 229
                                +      +                 E
Sbjct: 191 TWGRPSTR---IQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 85.3 bits (212), Expect = 2e-19
 Identities = 35/164 (21%), Positives = 54/164 (32%), Gaps = 25/164 (15%)

Query: 41  NTILHINIISQKRKNGSTKFIGEMLKKC--PSLLLQVNAK---GDTPLHLAAKFGHSNIV 95
           NT LH+       + G    +G + + C  P L   + A    G T LHLA+  G+  IV
Sbjct: 79  NTPLHLAC-----EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133

Query: 96  SFLIER-----AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKY 150
             L+       A+               TALH AV   N  +V +L K   D        
Sbjct: 134 ELLVSLGADVNAQ---------EPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQ 183

Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
           G +   +      + +  +L +         P  +         
Sbjct: 184 GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  118 bits (298), Expect = 2e-30
 Identities = 43/227 (18%), Positives = 76/227 (33%), Gaps = 30/227 (13%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
                      +H+AA+ G ++ V  LIE              N    TALH A   G V
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI------QNRFGCTALHLACKFGCV 66

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHA 190
              K L      +      +G+  +++A     +++V   L     V      G+     
Sbjct: 67  DTAKYLASVGEVH---SLWHGQKPIHLAVMANKTDLV-VAL-----VEGAKERGQMPESL 117

Query: 191 AAMHFYFENDQTAADIADKDRKMTALHLAA--GQGHARTVETILFL--DPKCYELVDHRG 246
                  E ++  + +     + TALH     G  +   ++ ++ L   P      D   
Sbjct: 118 LNECDEREVNEIGSHVKHCKGQ-TALHWCVGLGPEYLEMIKILVQLGASP---TAKDKAD 173

Query: 247 WNFLHYAMVSFKLHELKILLKNPLARS--LIYEGDNNGNTPLHVLAA 291
              L  AM       L +++    ++S   +   +  GN+ LH  A 
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAI 219

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  105 bits (264), Expect = 9e-26
 Identities = 41/247 (16%), Positives = 78/247 (31%), Gaps = 48/247 (19%)

Query: 71  LLLQVNAK-GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGN 129
            L++   + G  P  L  +     +                 + + +  TALH  V  G 
Sbjct: 102 ALVEGAKERGQMPESLLNECDEREVNEIGSH-----------VKHCKGQTALHWCVGLGP 150

Query: 130 --VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH------EG 181
             ++++KIL +     P +++K  +T L  A E R  E + +L+ +              
Sbjct: 151 EYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREAL-DLMMDTVPSKSSLRLDYAN 208

Query: 182 PNGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETIL- 232
             G + LH A +  + +    A        D+  +D +    L+L+         + +L 
Sbjct: 209 KQGNSHLHWAILINWED---VAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQ 265

Query: 233 -FLDPKCYELVDHRGWN----------FLHYAMVSFKLHELKILLKNPLARSLIYEGDNN 281
                       H G            F+  A    K   L++L +       +    N 
Sbjct: 266 KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK---LDEVVRSLNT 322

Query: 282 GNTPLHV 288
           G      
Sbjct: 323 GAGGAVK 329

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  101 bits (253), Expect = 3e-24
 Identities = 33/234 (14%), Positives = 67/234 (28%), Gaps = 45/234 (19%)

Query: 71  LLLQ----VNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHE 123
           +L+Q      AK    +TPL  A +F +   +  +++     +   +   N + N+ LH 
Sbjct: 158 ILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217

Query: 124 AVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE---NCTSVSHE 180
           A+      V     +   D    E+      LY++       +  ELL+        +  
Sbjct: 218 AILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP 276

Query: 181 GPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILF----LDP 236
             NG T L                   D+   +  +  AA       ++ +      +  
Sbjct: 277 YHNGTTVLP------------------DRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVR 318

Query: 237 KCYELVDHRGWNFLHYAMVSFKLHE--LKILLKNPLARSLIYEGDNNGNTPLHV 288
                  + G           K      ++ L      + +     +      V
Sbjct: 319 S-----LNTGAGGAVKR--KKKAAPAVKRMKLAP---SAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 87.2 bits (217), Expect = 2e-19
 Identities = 21/169 (12%), Positives = 46/169 (27%), Gaps = 33/169 (19%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           ++     G++ LH A      ++    +E    +         +NE    L+ +V    V
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM------EDNEHTVPLYLSVRAAMV 257

Query: 131 QVVKILTKQDPDY------------PYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
            + K L ++   +               +       +  AA+    E++  L E    V 
Sbjct: 258 LLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVV 317

Query: 179 HEGPNGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLA 219
                G                          A +  + R    +  ++
Sbjct: 318 RSLNTGAGGAVKRKKK---AAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 77.2 bits (191), Expect = 5e-16
 Identities = 32/216 (14%), Positives = 62/216 (28%), Gaps = 49/216 (22%)

Query: 146 SENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTA-- 203
             +      +++AA    ++ V  L+E   S + +   G TALH A      +   TA  
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVD---TAKY 71

Query: 204 -----ADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDH---RGWNFLHYAMV 255
                   +    +   +HLA        V            LV+    RG         
Sbjct: 72  LASVGEVHSLWHGQ-KPIHLAVMANKTDLVVA----------LVEGAKERGQMPESLLNE 120

Query: 256 SFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRY--------DAG 307
             +    +I           +     G T LH        E+ ++ ++          A 
Sbjct: 121 CDEREVNEI---------GSHVKHCKGQTALH-WCVGLGPEYLEM-IKILVQLGASPTAK 169

Query: 308 GNYG------AVNKQNVSVTDVLIYGSRELTLSNVN 337
                     A+  +N    D+++      +   ++
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD 205

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  114 bits (287), Expect = 6e-30
 Identities = 53/234 (22%), Positives = 93/234 (39%), Gaps = 41/234 (17%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
              +     +PLH AA+ GH +I   L++  A +         + ++ T L EA  + ++
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT------CSEDQRTPLMEAAENNHL 57

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPN------- 183
           + VK L K        ++  G T L++AA+  + E+V + L     +S+   +       
Sbjct: 58  EAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVV-QYL-----LSNGQMDVNCQDDG 110

Query: 184 GKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETILFLD 235
           G T +  A  + + +            +DI  +D +    LH AA  G     E  + L 
Sbjct: 111 GWTPMIWATEYKHVD---LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE--ILLA 165

Query: 236 PKCY-ELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
            KC    V+  G + LH A    +   + + L      S +   +  G TPL  
Sbjct: 166 AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR---DSDVTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 98.3 bits (246), Expect = 3e-24
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 31/172 (18%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER------AKLAAWQMMRMTNNEKNTALHEAV 125
           V+ K   G T LHLAAK GH  +V +L+         +          ++   T +  A 
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ----------DDGGWTPMIWAT 119

Query: 126 CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
            + +V +VK+L  +  D     +      L+ AA     ++   LL     +     +G 
Sbjct: 120 EYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD 178

Query: 186 TALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVE 229
           + LH AA    ++            +D+  K+++  T L  A+      +  
Sbjct: 179 SPLHIAARENRYD---CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSAL 227

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 72.4 bits (179), Expect = 6e-15
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 11/103 (10%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           +N +    +  LH AA  G  +I   L+     L A       N   ++ LH A      
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA------VNIHGDSPLHIAARENRY 190

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
             V +   +D D    +NK G+T L  A+        +++ + 
Sbjct: 191 DCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 60.1 bits (147), Expect = 1e-10
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           ++A    GD+PLH+AA+    + V   + R + +         N E  T L  A  +  V
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL------KNKEGETPLQCASLNSQV 223

Query: 131 QVVKILTKQDPD 142
                ++K   D
Sbjct: 224 WSALQMSKALQD 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  112 bits (284), Expect = 1e-29
 Identities = 57/244 (23%), Positives = 90/244 (36%), Gaps = 53/244 (21%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-----AKLAAWQMMRMTNNEKNTALHEAVC 126
                  GDTPLH+A   G+   V  L+        +L         NN + T LH AV 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI------YNNLRQTPLHLAVI 55

Query: 127 HGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN----CTSVSHEGP 182
                VV++L       P + +++G+T+ ++A E R    +  LL++       +     
Sbjct: 56  TTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 114

Query: 183 NGKTALHAAAMHFYFENDQTA-------ADIADKDRK--MTALHLAAGQGHARTVETILF 233
           +G TALH A      E   T        ADI   D K   + L  A        V+    
Sbjct: 115 DGLTALHVAVNTECQE---TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL--- 168

Query: 234 LDPKCYELVDH---------RGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNT 284
                  L+ H          G + LH A     L  ++ L+++    +     + + +T
Sbjct: 169 -------LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS---GADSSLKNCHNDT 218

Query: 285 PLHV 288
           PL V
Sbjct: 219 PLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 97.9 bits (245), Expect = 6e-24
 Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 23/170 (13%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKN----TALHEAVCH 127
             A    G T  HLA +      +  L++ A      +       +N    TALH AV  
Sbjct: 72  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-----EARNYDGLTALHVAVNT 126

Query: 128 GNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
              + V++L ++  D    + K G++ L  A E     MV  LL++  +V+ +  +G +A
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 186

Query: 188 LHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVE 229
           LH+A+                  AD + K+    T L +A  +     + 
Sbjct: 187 LHSASGRGLLP---LVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 74.8 bits (185), Expect = 1e-15
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 12/104 (11%)

Query: 75  VNAK----GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
           ++A     G +PL  A +    ++V  L++  A + A           ++ALH A   G 
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA------QMYSGSSALHSASGRGL 195

Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
           + +V+ L +   D    +N +  T L +A   R  +++      
Sbjct: 196 LPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  113 bits (286), Expect = 2e-29
 Identities = 54/248 (21%), Positives = 81/248 (32%), Gaps = 46/248 (18%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
           V   GDT LHLA    H   + FL+  +  A  + + + N+   TALH A   G    V+
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFS--AGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS----------HEGPNG 184
            L            + G T+L++A   R       LL+   S             +    
Sbjct: 63  KLYAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 185 KTALHAAAMHFYFENDQTA--------ADIADKDRK-MTALHLAAGQGHARTVETILFLD 235
            T+   AA+      +             +  ++    T LH+A     A  V       
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRL----- 176

Query: 236 PKCYELVDH----------RGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTP 285
                L D            G   LH A+ +     L++LLK     +        G TP
Sbjct: 177 -----LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTP 228

Query: 286 LHVLAAIR 293
           L   A +R
Sbjct: 229 LG-SALLR 235

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  109 bits (276), Expect = 5e-28
 Identities = 48/246 (19%), Positives = 79/246 (32%), Gaps = 44/246 (17%)

Query: 74  QVNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
            ++ +   G T LHLAA  G ++ V  L    A +             +TALH A     
Sbjct: 37  YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV------AERGGHTALHLACRVRA 90

Query: 130 VQVVKILTKQ---------DPDYPYSENKYGKTS----LYMAAEGRYSEMVIELLENCTS 176
                +L +          D     S++    TS       +     +E      +    
Sbjct: 91  HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ 150

Query: 177 VSHEGPNGKTALHAAAMHFYFENDQTA-------ADI--ADKDRKMTALHLAAGQGHART 227
           +  E  +G T LH A +H   E            AD+   +     T LHLA     A  
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAE---MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207

Query: 228 VETILFL--DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTP 285
           +E +L    DP       + G   L  A++       ++L  +    +   E   +  +P
Sbjct: 208 LELLLKAGADP---TARMYGGRTPLGSALLRPNPILARLLRAH---GAPEPEDGGDKLSP 261

Query: 286 LHVLAA 291
               + 
Sbjct: 262 CS-SSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 89.5 bits (223), Expect = 1e-20
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           + A+   G TPLH+A     + +V  L +  A L              T LH AV     
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK-----PEPTCGRTPLHLAVEAQAA 205

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHA 190
            V+++L K   D P +    G+T L  A       +   L  +      +G +  +   +
Sbjct: 206 SVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSS 264

Query: 191 AAMH 194
           +   
Sbjct: 265 SGSD 268

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 88.0 bits (219), Expect = 4e-20
 Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 19/165 (11%)

Query: 78  KGDTPLHLAAKFGHSN-IVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
               P  + ++    N       +   +L A       N + +T LH AV H + ++V++
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEA------ENYDGHTPLHVAVIHKDAEMVRL 176

Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHF 195
           L     D    E   G+T L++A E + + ++  LL+     +     G+T L +A +  
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236

Query: 196 YFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETIL 232
                  A       A   +     ++    +     +   +   
Sbjct: 237 NPI---LARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGD 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 78.4 bits (194), Expect = 1e-16
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 16/111 (14%)

Query: 71  LLLQ----VNAK----GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTAL 121
           LL      +N      G TPLHLA +   ++++  L++  A   A            T L
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA------RMYGGRTPL 229

Query: 122 HEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
             A+   N  + ++L          +     +    +     S+   E  E
Sbjct: 230 GSALLRPNPILARLLRAHGAP-EPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 10/70 (14%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
             A+   G TPL  A    +  +   L    A             +K +    +    + 
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE------DGGDKLSPCSSSGSDSDS 271

Query: 131 QVVKILTKQD 140
                  + D
Sbjct: 272 DNRDEGDEYD 281

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  112 bits (282), Expect = 2e-29
 Identities = 45/224 (20%), Positives = 76/224 (33%), Gaps = 25/224 (11%)

Query: 79  GDTPLHLAAKFGHSNIV-SFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
            + PLH A        V   L  + + L         + +    LH +V     ++   L
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQ------KDQDGRIPLHWSVSFQAHEITSFL 55

Query: 137 TKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTS--VSHEGPNGKTALHAAA 192
             +  + +     +  G T  ++A      E+V  L +      ++     G T LH A 
Sbjct: 56  LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115

Query: 193 MHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDH 244
              +FE    +       A +  KD+     LH AA  G  + +E +  L        D 
Sbjct: 116 GKKWFE---VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172

Query: 245 RGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
           +GW  L +A+         +L++   A       DN G     V
Sbjct: 173 QGWTPLFHALAEGHGDAAVLLVEKYGAE--YDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 92.1 bits (230), Expect = 5e-22
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 17/159 (10%)

Query: 75  VNAK------GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHG 128
           VN        G TP H+A   G+  +V  L +R        +    N+  T LH AV   
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD---LNKITNQGVTCLHLAVGKK 118

Query: 129 NVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTS-VSHEGPNGKTA 187
             +V + L +        ++K+ +  L+ AA     +++  L     S V+ +   G T 
Sbjct: 119 WFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177

Query: 188 LHAAAMHFYFEN-----DQTAADIADKDRK-MTALHLAA 220
           L  A    + +      ++  A+    D K   A  +A 
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 66.3 bits (163), Expect = 8e-13
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 15/102 (14%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIE--RAKLAAWQMMRMTNNEKNTALHEAVCHGN 129
           V  K      PLH AA  G   ++  L    ++ +         + +  T L  A+  G+
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW------QDKQGWTPLFHALAEGH 186

Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELL 171
                +L ++        +  G  +  +A      E V +  
Sbjct: 187 GDAAVLLVEKYGAEYDLVDNKGAKAEDVALN----EQVKKFF 224

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  113 bits (285), Expect = 3e-29
 Identities = 50/248 (20%), Positives = 80/248 (32%), Gaps = 54/248 (21%)

Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
             + +  L  A +    ++V  L+E  A +              T LH AV      +V+
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNF-----QEEEGGWTPLHNAVQMSREDIVE 56

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
           +L +   D P    K G T   +AA     +++   L     V+     G TA   AA++
Sbjct: 57  LLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 115

Query: 195 FYFE--------------NDQTAADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCY 239
              +                +T  D     +   TAL  AA +GH   ++          
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI--------- 166

Query: 240 ELVDHRG----------WNFLHYAMVSFKLHELKILLKNPLARSLIYEG------DNNGN 283
            L+D  G           N L +A       +  +     +   L+  G         G 
Sbjct: 167 -LLDEMGADVNACDNMGRNALIHA--LLSSDDSDVE---AITHLLLDHGADVNVRGERGK 220

Query: 284 TPLHVLAA 291
           TPL  LA 
Sbjct: 221 TPLI-LAV 227

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  108 bits (273), Expect = 2e-27
 Identities = 47/246 (19%), Positives = 81/246 (32%), Gaps = 78/246 (31%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
              +   G TP  LAA  G   ++   + + A +         +    TA  EA  +G V
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE------CDFYGFTAFMEAAVYGKV 118

Query: 131 QVVKILTKQ---------DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEG 181
           + +K L K+           +      K G T+L  AAE  + E++ ++L     +   G
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL-KIL-----LDEMG 172

Query: 182 PN-------GKTALHAAAMHFYFENDQTAADI-----ADKDRK----MTALHLAAGQGHA 225
            +       G+ AL  A +     + +    +     AD + +     T L LA  + H 
Sbjct: 173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232

Query: 226 RTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTP 285
             V+           L++                               I + D++G T 
Sbjct: 233 GLVQR----------LLEQEHIE--------------------------INDTDSDGKTA 256

Query: 286 LHVLAA 291
           L  LA 
Sbjct: 257 LL-LAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 77.5 bits (192), Expect = 2e-16
 Identities = 35/177 (19%), Positives = 55/177 (31%), Gaps = 50/177 (28%)

Query: 67  KCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIER------AKLAAWQMMRMTNNEKNTA 120
           K      ++   G T L  AA+ GH  ++  L++       A           +N    A
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC----------DNMGRNA 185

Query: 121 LHEAVCHGNV----QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTS 176
           L  A+   +      +  +L     D      + GKT L +A E ++  +V  LL     
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLL----- 239

Query: 177 VSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRK-MTALHLAAGQGHARTVETIL 232
              E                        +I D D    TAL LA      +  E + 
Sbjct: 240 -EQEH----------------------IEINDTDSDGKTALLLAVELKLKKIAELLC 273

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 14/107 (13%)

Query: 75  VNAK---GDTPLHLAAKFGHSN----IVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVC 126
           VNA    G   L  A      +    I   L++  A +              T L  AV 
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV------RGERGKTPLILAVE 228

Query: 127 HGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
             ++ +V+ L +Q+       +  GKT+L +A E +  ++   L + 
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 58.6 bits (143), Expect = 5e-10
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 19/92 (20%)

Query: 54  KNGSTKFIGEMLKKCPSLLLQ----VNAK---GDTPLHLAAKFGHSNIVSFLIER--AKL 104
            +     +  +      LLL     VN +   G TPL LA +  H  +V  L+E+   ++
Sbjct: 191 LSSDDSDVEAITH----LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246

Query: 105 AAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
                   T+++  TAL  AV     ++ ++L
Sbjct: 247 ND------TDSDGKTALLLAVELKLKKIAELL 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  112 bits (284), Expect = 4e-29
 Identities = 41/225 (18%), Positives = 69/225 (30%), Gaps = 31/225 (13%)

Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
           +AK      L    G    +   + +  K            +       A   G+ + V 
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKV-------KFDDGAVFLAACSSGDTEEVL 57

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
            L ++  D     N  G T+L+ A      +MV  L+EN  +++     G   LHAAA  
Sbjct: 58  RLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC 116

Query: 195 FYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRG 246
            Y +    A       A +   + +  T L +A  +     ++  +       E      
Sbjct: 117 GYLD---IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEE 173

Query: 247 WNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
              +            + L               +G T LHV AA
Sbjct: 174 ERIMLRDAR-------QWLNSG---HINDVRHAKSGGTALHV-AA 207

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  111 bits (281), Expect = 1e-28
 Identities = 52/224 (23%), Positives = 88/224 (39%), Gaps = 28/224 (12%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           +N     G T LH A    + ++V FL+E  A +         +NE    LH A   G +
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFLVENGANINQ------PDNEGWIPLHAAASCGYL 119

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHA 190
            + + L  Q      + N  G T L +A E    E++ +       V+ +G + + A   
Sbjct: 120 DIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELL-QNE-----VNRQGVDIEAARKE 172

Query: 191 AAMHFYFENDQT----AADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCY-ELVDH 244
                  +  Q       +     +   TALH+AA +G+   ++  L +  +    + D+
Sbjct: 173 EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK--LLIQARYDVNIKDY 230

Query: 245 RGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
            GW  LH A    K    +IL++N L    +   +  G T   V
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVEN-LCD--MEAVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 91.0 bits (227), Expect = 4e-21
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 23/163 (14%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
           VN++GDTPL +A +     ++   + R              +   A  E          +
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQNEVNRQ-----------GVDIEAARKEEERIMLRDARQ 183

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
            L     +      K G T+L++AA   Y+E++  L++    V+ +  +G T LHAAA  
Sbjct: 184 WLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW 242

Query: 195 FYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVE 229
              E             D+   ++   TA  +A         E
Sbjct: 243 GKEE---ACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEE 282

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 74.1 bits (183), Expect = 3e-15
 Identities = 34/191 (17%), Positives = 60/191 (31%), Gaps = 33/191 (17%)

Query: 110 MRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIE 169
           M+M + ++          G+   ++    +       +   G   L   + G   E V+ 
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKK-TKVKFDDGAVFLAACSSGDT-EEVLR 58

Query: 170 LLENCTSVSHEGPNGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAG 221
           LLE    +++   +G TALH A      +N           A+I   D +    LH AA 
Sbjct: 59  LLERGADINYANVDGLTALHQAC---IDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS 115

Query: 222 QGHARTVETILFL-----DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIY 276
            G+    E   +L            V+  G   L  A    +  E        L ++ + 
Sbjct: 116 CGYLDIAE---YLISQGAHV---GAVNSEGDTPLDIA--EEEAME-------ELLQNEVN 160

Query: 277 EGDNNGNTPLH 287
               +      
Sbjct: 161 RQGVDIEAARK 171

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 72.5 bits (179), Expect = 1e-14
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 27/164 (16%)

Query: 31  IESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQ----VNAK---GDTPL 83
           +++ +  Q  +       I   RK      + +  +     L             G T L
Sbjct: 155 LQNEVNRQGVD-------IEAARKEEERIMLRDARQ----WLNSGHINDVRHAKSGGTAL 203

Query: 84  HLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPD 142
           H+AA  G++ ++  LI+    +         + +  T LH A   G  +  +IL +   D
Sbjct: 204 HVAAAKGYTEVLKLLIQARYDVNI------KDYDGWTPLHAAAHWGKEEACRILVENLCD 257

Query: 143 YPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKT 186
              + NK G+T+  +A E      + EL +    +  E    K+
Sbjct: 258 -MEAVNKVGQTAFDVADEDILGY-LEELQKKQNLLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.4 bits (137), Expect = 3e-09
 Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 34/159 (21%)

Query: 147 ENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTA--- 203
            +   K +  +         +   +        +  +G   L A +      + +     
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSG----DTEEVLRL 59

Query: 204 ----ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDH---------RGWNF 249
               ADI   +   +TALH A    +   V+           LV++          GW  
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMVKF----------LVENGANINQPDNEGWIP 109

Query: 250 LHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
           LH A     L   + L+      + +   ++ G+TPL +
Sbjct: 110 LHAAASCGYLDIAEYLISQ---GAHVGAVNSEGDTPLDI 145

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  111 bits (281), Expect = 4e-29
 Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 30/233 (12%)

Query: 74  QVNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
            +          +  A ++G       L+E    +         + E  T LH A  +  
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQ------PDKENVTLLHWAAINNR 54

Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALH 189
           + +VK    +             T L+ A    +  MV++L++     S     G + +H
Sbjct: 55  IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIH 114

Query: 190 AAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHAR-TVETILFLDPKCYE 240
            AA   +               D+   D+  MT L  AA + H+      +L  +     
Sbjct: 115 LAAQFGHTS---IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171

Query: 241 LVDHRGWNFLHYAMVSFKLHE--LKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
              +     LH+A      +   + +LL+     + +   +  G + L  LA 
Sbjct: 172 GDKYHKNTALHWA--VLAGNTTVISLLLEA---GANVDAQNIKGESALD-LAK 218

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 98.3 bits (246), Expect = 4e-24
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 35/178 (19%)

Query: 75  VNAK----GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
           V+        TPLH A + GH ++V  L++  A  +        + E  + +H A   G+
Sbjct: 68  VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL------IDGEGCSCIHLAAQFGH 121

Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH-------EGP 182
             +V  L  +  D     ++ G T L  AA   +S     LL     ++        +  
Sbjct: 122 TSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLL-----LTFNVSVNLGDKY 175

Query: 183 NGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETIL 232
           +  TALH A +                 A++  ++ K  +AL LA  + +   +  + 
Sbjct: 176 HKNTALHWAVLAGNTT---VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 75.2 bits (186), Expect = 7e-16
 Identities = 41/162 (25%), Positives = 56/162 (34%), Gaps = 31/162 (19%)

Query: 148 NKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTA---- 203
           + Y    +  A +    E   EL+E    V        T LH AA++   +         
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRID---LVKYYI 62

Query: 204 ---ADI--ADKDRKMTALHLAAGQGHARTVETILFL-----DPKCYELVDHRGWNFLHYA 253
              A +     D   T LH A  QGH   V     L     DP    L+D  G + +H A
Sbjct: 63  SKGAIVDQLGGDLNSTPLHWATRQGHLSMVV---QLMKYGADP---SLIDGEGCSCIHLA 116

Query: 254 MVSFKLHE--LKILLKNPLARSLIYEGDNNGNTPLHVLAAIR 293
             +   H   +  L+        +   D NG TPL   AA R
Sbjct: 117 --AQFGHTSIVAYLIAK---GQDVDMMDQNGMTPLM-WAAYR 152

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 73.2 bits (181), Expect = 3e-15
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 11/104 (10%)

Query: 75  VNAK---GDTPLHLAAKFGHS-NIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
           V+     G TPL  AA   HS +    L+     +            KNTALH AV  GN
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL-----GDKYHKNTALHWAVLAGN 189

Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
             V+ +L +   +   ++N  G+++L +A + +   M+  L E 
Sbjct: 190 TTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVWMINHLQEA 232

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  110 bits (278), Expect = 3e-28
 Identities = 46/235 (19%), Positives = 75/235 (31%), Gaps = 46/235 (19%)

Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
                +P+H AA  GH   +  LI +   +           +  + LHEA   G++  VK
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI------ITADHVSPLHEACLGGHLSCVK 109

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
           IL K              T L+ A      + V  LL++  SV  E  +  + +H AA  
Sbjct: 110 ILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARR 167

Query: 195 FYFENDQTA-------ADIADKDRKM-TALHLAAGQGHARTVETILFLDPKCYELVDH-- 244
            + E             +I  K   + T L+LA        V+           L++   
Sbjct: 168 GHVE---CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK----------LLESGA 214

Query: 245 ------RGWNFLHYAMVSFKLHE--LKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
                    + LH         E    +L+      +     +  G  P+  L  
Sbjct: 215 DVNQGKGQDSPLHAV--VRTASEELACLLMDF---GADTQAKNAEGKRPVE-LVP 263

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  107 bits (271), Expect = 2e-27
 Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 35/208 (16%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           VN       +PLH A   GH + V  L++  A++           + +T L  A   G+ 
Sbjct: 85  VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG------VTADWHTPLFNACVSGSW 138

Query: 131 QVVKILTKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
             V +L +                + ++ AA   + E V  L+    ++ H+  +  T L
Sbjct: 139 DCVNLLLQHGASVQ----PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL 194

Query: 189 HAAAMHFYFENDQTA-------ADI-ADKDRKMTALHLAAGQGHARTVETILFL--DPKC 238
           + A  +                AD+   K +  + LH             ++    D   
Sbjct: 195 YLACENQQRA---CVKKLLESGADVNQGKGQD-SPLHAVVRTASEELACLLMDFGADT-- 248

Query: 239 YELVDHRGWNFLHYAMVSFKLHELKILL 266
            +  +  G   +       +    ++ L
Sbjct: 249 -QAKNAEGKRPVELV--PPESPLAQLFL 273

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 94.5 bits (236), Expect = 2e-22
 Identities = 37/230 (16%), Positives = 67/230 (29%), Gaps = 49/230 (21%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
           G  P       G   + + L+  A                + +HEA  HG+   ++ L  
Sbjct: 33  GSKPAGPRDFPGIRLLSNPLMGDAV------------SDWSPMHEAAIHGHQLSLRNLIS 80

Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
           Q             + L+ A  G +   V  LL++   V+    +  T L  A +   ++
Sbjct: 81  QGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD 139

Query: 199 NDQTA-------ADIADKDRKMTALHLAAGQGHARTVETILFL-----DPKCYELVDHRG 246
                       A +  +    + +H AA +GH   V     L     +    +      
Sbjct: 140 ---CVNLLLQHGASVQPESDLASPIHEAARRGHVECVN---SLIAYGGNI---DHKISHL 190

Query: 247 WNFLHYAMVSFKLHELKILLKNPLARSLIYEG-----DNNGNTPLHVLAA 291
              L+ A                  + L+  G         ++PLH    
Sbjct: 191 GTPLYLA--CENQQ-RAC------VKKLLESGADVNQGKGQDSPLH-AVV 230

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.3 bits (207), Expect = 2e-18
 Identities = 30/223 (13%), Positives = 66/223 (29%), Gaps = 46/223 (20%)

Query: 85  LAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDY 143
           + +   H +  S L+ R + +A+    +    + +         G   +   L       
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMAS-MDGKQGGMDGSKPAGPRDFPGIRLLSNPLMG----- 54

Query: 144 PYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTA 203
              +     + ++ AA   +   +  L+    +V+    +  + LH A +  +       
Sbjct: 55  ---DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLS---CV 108

Query: 204 -------ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDH--------RGW 247
                  A +        T L  A   G    V            L+ H           
Sbjct: 109 KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL----------LLQHGASVQPESDLA 158

Query: 248 NFLHYAMVSFKLHE--LKILLKNPLARSLIYEGDNNGNTPLHV 288
           + +H A  + + H   +  L+        I    ++  TPL++
Sbjct: 159 SPIHEA--ARRGHVECVNSLIAY---GGNIDHKISHLGTPLYL 196

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.7 bits (125), Expect = 9e-08
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 9/68 (13%)

Query: 74  QVNAK--GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
            VN     D+PLH   +     +   L++  A   A       N E    +        +
Sbjct: 215 DVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQA------KNAEGKRPVELVPPESPL 268

Query: 131 QVVKILTK 138
             + +  +
Sbjct: 269 AQLFLERE 276

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  107 bits (271), Expect = 2e-27
 Identities = 42/261 (16%), Positives = 78/261 (29%), Gaps = 50/261 (19%)

Query: 42  TILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSFL 98
            +  IN          +K +   L                G +  + A    +  +V  L
Sbjct: 3   DLSRIN-------TWKSKQLKSFLSSK-----DTFKADVHGHSASYYAIADNNVRLVCTL 50

Query: 99  IER-AKLAAWQMMRMTNNEKN--TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL 155
           +   A            N       LH+A    + ++VKIL     D     +  G T+L
Sbjct: 51  LNAGALK----------NLLENEFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTAL 99

Query: 156 YMAAEGRYSEMVIELLENCTSVSHEGPNG-KTALHAAAMHFYFEN-----DQTAADIADK 209
           Y A +    + V   ++    +   G  G KT+ + A M            +  +     
Sbjct: 100 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA 159

Query: 210 DRKMTALHLAAGQGHARTVETILFLDPKCY-ELVDHRGW-NFLHYAMVSFKLHELKILLK 267
              ++ +H+    GH   +   L LD        +   +   +  A+ +  +  L+ L K
Sbjct: 160 I-LLSCIHITIKNGHVDMMI--LLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK 216

Query: 268 NPLARSLIYEGDNNGNTPLHV 288
                      D N  +    
Sbjct: 217 Y----------DINIYSANLE 227

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  105 bits (264), Expect = 2e-26
 Identities = 37/230 (16%), Positives = 71/230 (30%), Gaps = 44/230 (19%)

Query: 75  VNAK-GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQV 132
            N    + PLH AA    + IV  L+      +        +++ NTAL+ AV  GN+Q 
Sbjct: 57  KNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQ------FDDKGNTALYYAVDSGNMQT 110

Query: 133 VKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA 192
           VK+  K++    +      KTS Y A       +V   L    S   +     + +H   
Sbjct: 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-FDLAILLSCIHITI 169

Query: 193 MHFYFENDQTA-------ADI--ADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVD 243
            + + +                  +    +  + LA        ++           L  
Sbjct: 170 KNGHVD---MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQA----------LFK 216

Query: 244 HRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEG------DNNGNTPLH 287
           +          +     E  +L    +A+ +I +           +  + 
Sbjct: 217 YD-------INIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 67.2 bits (165), Expect = 7e-13
 Identities = 12/118 (10%), Positives = 39/118 (33%), Gaps = 14/118 (11%)

Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
            A   + +H+  K GH +++  L++              +      +  A+ + ++++++
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTSTNT-----NNSLLFIPDIKLAIDNKDIEMLQ 212

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA 192
            L K D +          ++         +E+   ++E       +       +    
Sbjct: 213 ALFKYDIN--------IYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNN 262

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  109 bits (275), Expect = 3e-27
 Identities = 49/278 (17%), Positives = 92/278 (33%), Gaps = 54/278 (19%)

Query: 75  VNAKGD---TPLHLAAKFGHS-NIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
               G+     L  AA+ G+   +++ L        A      ++  K+T LH A  +  
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA------SDGRKSTPLHLAAGYNR 70

Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALH 189
           V++V++L +   D  ++++K G   L+ A    + E+   LL++   V+       T LH
Sbjct: 71  VRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129

Query: 190 AAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYEL 241
            AA     E            AD    +    +A+ +A        +             
Sbjct: 130 EAASKNRVE---VCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLT------------ 174

Query: 242 VDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIK 301
            + +G + L  A     L ++K  L   +     ++   +  T LH  A        K  
Sbjct: 175 YEFKGHSLLQAA-READLAKVKKTLALEII---NFKQPQSHETALH-CAVASLHPKRKQV 229

Query: 302 VRY--------DAGGNYG------AVNKQNVSVTDVLI 325
                      +            A  + +  V +VL 
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 89.9 bits (224), Expect = 2e-20
 Identities = 41/242 (16%), Positives = 80/242 (33%), Gaps = 57/242 (23%)

Query: 71  LLLQ----VNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHE 123
           LLL            G + + +A        +++                   K  +L +
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF-----------------KGHSLLQ 184

Query: 124 AVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYS---EMVIELLENCTSVSHE 180
           A    ++  VK     +    + + +  +T+L+ A    +    ++   LL    +V+ +
Sbjct: 185 AAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK 243

Query: 181 GPNGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETIL 232
             +  T LH AA   + +            A +   D    TALH AA  GH +T   +L
Sbjct: 244 NKDFMTPLHVAAERAHND---VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300

Query: 233 FL--DPKCYELVDHRGWNFLHYAMVSFKLHEL-KILLKNPLARSLIYEGDNNGNTPLHVL 289
               DP    ++  +G+            +E  + +L        +   D +    L   
Sbjct: 301 SYGSDP---SIISLQGFTAAQMG------NEAVQQILSEST---PMRTSDVDY--RLL-E 345

Query: 290 AA 291
           A+
Sbjct: 346 AS 347

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 77.9 bits (193), Expect = 3e-16
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 18/124 (14%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           VN K     TPLH+AA+  H++++  L +  AK+ A       ++   TALH A   G++
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA------LDSLGQTALHRAALAGHL 293

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHA 190
           Q  ++L     D P   +  G T+  M       E V ++L   T +     +    L  
Sbjct: 294 QTCRLLLSYGSD-PSIISLQGFTAAQMGN-----EAVQQILSESTPM--RTSDVDYRLLE 345

Query: 191 AAMH 194
           A+  
Sbjct: 346 ASKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.3 bits (137), Expect = 4e-09
 Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 21/142 (14%)

Query: 161 GRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTA-------ADIADKD-RK 212
           G + +  ++L +        G   K  L  AA       ++          +    D RK
Sbjct: 1   GEFGKSALDLADPSAKAVLTGEYKKDELLEAA--RSGNEEKLMALLTPLNVNCHASDGRK 58

Query: 213 MTALHLAAGQGHARTVETILFL--DPKCYELVDHRGWNFLHYAMVSFKLHEL-KILLKNP 269
            T LHLAAG    R V+ +L    D       D  G   LH A  S+  +E+ ++LLK+ 
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHGADV---HAKDKGGLVPLHNA-CSYGHYEVTELLLKH- 113

Query: 270 LARSLIYEGDNNGNTPLHVLAA 291
              + +   D    TPLH  AA
Sbjct: 114 --GACVNAMDLWQFTPLH-EAA 132

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  105 bits (264), Expect = 6e-27
 Identities = 52/234 (22%), Positives = 79/234 (33%), Gaps = 67/234 (28%)

Query: 76  NAK---GDTPLHLAAKFGHSNIVSFLIER-----AKLAAWQMMRMTNNEKNTALHEAVCH 127
           N     G+T LHLAA++  S+    L+E       +          +N   T LH AV  
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ----------DNMGRTPLHAAVSA 68

Query: 128 GNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
               V +IL +       +    G T L +AA      M+ +L+ +   V+     GK+A
Sbjct: 69  DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128

Query: 188 LHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCY 239
           LH AA     +    A       A+   ++ +  T L LAA +G   T +          
Sbjct: 129 LHWAAAVNNVD---AAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV--------- 176

Query: 240 ELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIR 293
            L+DH   N                              D+    P  + A  R
Sbjct: 177 -LLDH-FAN--------------------------RDITDHMDRLPRDI-AQER 201

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 75.1 bits (186), Expect = 6e-16
 Identities = 43/172 (25%), Positives = 65/172 (37%), Gaps = 15/172 (8%)

Query: 128 GNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
               V+     Q        ++ G+T+L++AA    S+    LLE     + +   G+T 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 188 LHAAAMHFYFEN-----DQTAADIADKDRK-MTALHLAAGQGHARTVETILFL--DPKCY 239
           LHAA                A D+  +     T L LAA       +E ++    D    
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV--- 118

Query: 240 ELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
             VD  G + LH+A     +    +LLKN    +     +N   TPL  LAA
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVLLKN---GANKDMQNNREETPLF-LAA 166

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  108 bits (271), Expect = 1e-26
 Identities = 37/243 (15%), Positives = 72/243 (29%), Gaps = 46/243 (18%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
              P       G+  +  F     ++           E    LH     G+  + + +T+
Sbjct: 61  SLYPNPQGYGNGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTE-AAGSYAITEPITR 114

Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTS--------VSHEGPNGKTALHA 190
           +  +    + ++ +T L+  A    +E   +L+ +           V+    +  T L  
Sbjct: 115 ESVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 172

Query: 191 AAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCY--- 239
           A +                 AD    ++   +ALH AA       +     L+       
Sbjct: 173 AVLARRRR---LVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMV--YMLNSTKLKGD 227

Query: 240 -ELVDHRGWNFLHYAMVSFKLHE-----LKILLK-----NPLARSLIYEGDNNGNTPLHV 288
            E +D  G   L     +           K+L++     +    +        G T LH 
Sbjct: 228 IEELDRNGMTALMIV--AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH- 284

Query: 289 LAA 291
            AA
Sbjct: 285 YAA 287

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  103 bits (260), Expect = 3e-25
 Identities = 49/250 (19%), Positives = 84/250 (33%), Gaps = 52/250 (20%)

Query: 75  VNAK--GDTPLHLAAKFGHSNIVSFLIERAKLAAWQM---MRMTNNEKNTALHEAVCHGN 129
           +       T LH  A    +     LI             +   + ++NT L  AV    
Sbjct: 119 IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR 178

Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTS---VSHEGPNGKT 186
            ++V  L K   D P   NK  +++L+ AA  R   M++ +L +      +     NG T
Sbjct: 179 RRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT 237

Query: 187 ALHAAAMHFYFENDQTA-------ADI-----ADKDRK----MTALHLAAGQGHARTVET 230
           AL   A +   +   +A       A +     A KD +     TALH AA   +   V+ 
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 297

Query: 231 ILFLDPKCYELVDHRG----------WNFLHYAMVSFKLHE--LKILLKNPLARSLIYEG 278
                     LV  +G             +  A  + +     +  L++     + +   
Sbjct: 298 ----------LVGEKGSNKDKQDEDGKTPIMLA--AQEGRIEVVMYLIQQ---GASVEAV 342

Query: 279 DNNGNTPLHV 288
           D   +T   +
Sbjct: 343 DATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 26/177 (14%), Positives = 47/177 (26%), Gaps = 27/177 (15%)

Query: 127 HGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKT 186
           + +V +  +  ++     +      + SL  A+   Y +     L++             
Sbjct: 13  NASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQH---------YSLY 63

Query: 187 ALHAAAMHFYFE----NDQTAADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYEL 241
                  +        N        + + +    LH  A  G     E           +
Sbjct: 64  PNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITE--PITRESVNII 120

Query: 242 VDHRGWNFLHYAMVSFKLH-ELKILLKNPLARSLIYEG------DNNGNTPLHVLAA 291
                   LH+   +     E    L    A+  I  G      D + NTPL  LA 
Sbjct: 121 DPRHNRTVLHWI--ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM-LAV 174

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
            + +   G TP+ LAA+ G   +V +LI++ A + A       +   +TA   A  + + 
Sbjct: 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA------VDATDHTARQLAQANNHH 359

Query: 131 QVVKILTKQDPD 142
            +V I  +  P+
Sbjct: 360 NIVDIFDRCRPE 371

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  102 bits (258), Expect = 1e-26
 Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 19/163 (11%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
               +H  A  G    ++  IE+   +        T+ E  T L  A  HG + VV+ L 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINH------TDEEGFTPLMWAAAHGQIAVVEFLL 56

Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYF 197
           +   D P    K  +++L +A    Y+++V  LL+    V+    NG T L  A    + 
Sbjct: 57  QNGAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHV 115

Query: 198 ENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETIL 232
           +            AD   +      ++ LA   G+    + I 
Sbjct: 116 K---CVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 92.8 bits (232), Expect = 6e-23
 Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 11/124 (8%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           +N     G TPL  AA  G   +V FL++  A              + +AL  A   G  
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL------LGKGRESALSLACSKGYT 82

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHA 190
            +VK+L     D     +  G T L  A  G + + V  LLE+    + E  +G  ++  
Sbjct: 83  DIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 141

Query: 191 AAMH 194
           A   
Sbjct: 142 AVAL 145

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 75.1 bits (186), Expect = 2e-16
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 15/111 (13%)

Query: 71  LLLQ----VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALH 122
            LLQ            ++ L LA   G+++IV  L++    +         +    T L 
Sbjct: 54  FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE------YDWNGGTPLL 107

Query: 123 EAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
            AV   +V+ VK+L +   D P  E   G  S+ +A    Y  +   +  +
Sbjct: 108 YAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 65.9 bits (162), Expect = 4e-13
 Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 39/158 (24%)

Query: 151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTA------- 203
              S++  A       +   +E    ++H    G T L  AA H                
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIA---VVEFLLQNG 59

Query: 204 ADI--ADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDH---------RGWNFLHY 252
           AD     K R  +AL LA  +G+   V+           L+D           G   L Y
Sbjct: 60  ADPQLLGKGR-ESALSLACSKGYTDIVKM----------LLDCGVDVNEYDWNGGTPLLY 108

Query: 253 AMVSFKLHE--LKILLKNPLARSLIYEGDNNGNTPLHV 288
           A      H   +K+LL++    +      ++G   + +
Sbjct: 109 A--VHGNHVKCVKMLLES---GADPTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 59.3 bits (145), Expect = 7e-11
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 10/72 (13%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           VN     G TPL  A    H   V  L+E  A            +    ++  AV  G  
Sbjct: 95  VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI------ETDSGYNSMDLAVALGYR 148

Query: 131 QVVKILTKQDPD 142
            V +++      
Sbjct: 149 SVQQVIESHLLK 160

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 52.8 bits (128), Expect = 1e-08
 Identities = 30/124 (24%), Positives = 40/124 (32%), Gaps = 30/124 (24%)

Query: 183 NGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETILFL 234
               ++H  A                    I   D +  T L  AA  G    VE   FL
Sbjct: 2   ANSLSVHQLAAQ---GEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVE---FL 55

Query: 235 -----DPKCYELVDHRGWNFLHYAMVSFKLHE--LKILLKNPLARSLIYEGDNNGNTPLH 287
                DP   +L+     + L  A    K +   +K+LL        + E D NG TPL 
Sbjct: 56  LQNGADP---QLLGKGRESALSLA--CSKGYTDIVKMLLDC---GVDVNEYDWNGGTPLL 107

Query: 288 VLAA 291
             A 
Sbjct: 108 -YAV 110

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  105 bits (264), Expect = 1e-26
 Identities = 52/256 (20%), Positives = 83/256 (32%), Gaps = 62/256 (24%)

Query: 75  VNAK---GDTPLHLAAKFG-------------HSNIVSFLIER-AKLAAWQMMRMTNNEK 117
           VN +   G TPL +A+  G                ++S  I + A L        T+   
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN-----QTDRTG 57

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSV 177
            TALH A  +      K L +   D    ++  G+T L+ A       +  ++L     +
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVF-QIL-----I 110

Query: 178 SHEGPN-------GKTALHAAAMHFYFENDQTA-------ADI--ADKDRKMTALHLAAG 221
            +   +       G T L  AA                  AD+   D   K +ALH AA 
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEG---MLEDLINSHADVNAVDDLGK-SALHWAAA 166

Query: 222 QGHARTVETIL----FLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYE 277
             +      +L      D +     ++R    L  A         K+LL +    +    
Sbjct: 167 VNNVDAAVVLLKNGANKDMQ-----NNREETPLFLAAREGSYETAKVLLDH---FANRDI 218

Query: 278 GDNNGNTPLHVLAAIR 293
            D+    P  + A  R
Sbjct: 219 TDHMDRLPRDI-AQER 233

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 94.5 bits (236), Expect = 1e-22
 Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 31/172 (18%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER------AKLAAWQMMRMTNNEKNTALHEAV 125
            N +   G TPLH A       +   LI        A+           ++  T L  A 
Sbjct: 83  ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR----------MHDGTTPLILAA 132

Query: 126 CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
                 +++ L     D   + +  GK++L+ AA     +  + LL+N  +   +    +
Sbjct: 133 RLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE 191

Query: 186 TALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVE 229
           T L  AA    +E   TA       A+    D        +A  + H   V 
Sbjct: 192 TPLFLAAREGSYE---TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 240

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 71.0 bits (175), Expect = 3e-14
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           VNA    G + LH AA   + +    L++  A           NN + T L  A   G+ 
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM------QNNREETPLFLAAREGSY 203

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELL 171
           +  K+L     +     +   +    +A E  + ++V  LL
Sbjct: 204 ETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIV-RLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
            + +    +TPL LAA+ G       L++  A          T++        A    + 
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI------TDHMDRLPRDIAQERMHH 236

Query: 131 QVVKILTKQDPD 142
            +V++L  +   
Sbjct: 237 DIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 25/140 (17%), Positives = 39/140 (27%), Gaps = 58/140 (41%)

Query: 181 GPNGKTALHAAAMHFYFENDQTA-----------------ADIA---DKDRKMTALHLAA 220
           GP+G T L  A+          +                 A +    D+  + TALHLAA
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE-TALHLAA 65

Query: 221 GQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDN 280
               +   +           L++    +                              DN
Sbjct: 66  RYSRSDAAKR----------LLEA-SAD--------------------------ANIQDN 88

Query: 281 NGNTPLHVLAAIRPKEFFKI 300
            G TPLH   +   +  F+I
Sbjct: 89  MGRTPLHAAVSADAQGVFQI 108

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  102 bits (257), Expect = 4e-26
 Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 21/170 (12%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           V+     G+TPL++A       I   LI+R A +         N+  ++    A   G  
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL------QNSISDSPYLYAGAQGRT 85

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN-CTSVSHEGPNGKTALH 189
           +++  + K         N+YG  +L  AAE  + + V  LLE+    +  +   G TAL 
Sbjct: 86  EILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI 145

Query: 190 AAAMHFYFENDQTA---------ADIADKDRK-MTALHLAAGQGHARTVE 229
            A                     AD + KD    TA+  A  +G+    +
Sbjct: 146 EAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISK 195

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 96.4 bits (241), Expect = 9e-24
 Identities = 38/237 (16%), Positives = 74/237 (31%), Gaps = 70/237 (29%)

Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
             +    L  A +     +   L +   ++         + E NT L+ AV + ++++ K
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDE------VDTEGNTPLNIAVHNNDIEIAK 56

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPN-------GKTA 187
            L  +  D    +N    +    A     +E++   +     + H  P+       G  A
Sbjct: 57  ALIDRGAD-INLQNSISDSPYLYAGAQGRTEIL-AYM-----LKHATPDLNKHNRYGGNA 109

Query: 188 LHAAAMHFYFEN-----DQTAADIADKDRK-MTALHLAA-----GQGHARTVETILFLDP 236
           L  AA   + +N     +    DI  ++    TAL  A       Q +   V+       
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL------ 163

Query: 237 KCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIR 293
               L+++ G +                              DN+G T +   A  +
Sbjct: 164 ----LMEN-GAD--------------------------QSIKDNSGRTAMD-YANQK 188

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 17/108 (15%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIE--RAKLAAWQMMRMTNNEKNTALHEAVC--- 126
           +N     G   L  AA+ GH + V  L+E  R  +         N+   TAL EAV    
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF------QNDFGYTALIEAVGLRE 152

Query: 127 --HGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
                  +VK+L +   D    ++  G+T++  A +  Y+E+   L +
Sbjct: 153 GNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 48.6 bits (117), Expect = 6e-07
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 15/75 (20%)

Query: 75  VNAK---GDTPLHLAAKF-----GHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAV 125
           ++ +   G T L  A         + +IV  L+E  A  +        +N   TA+  A 
Sbjct: 133 IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI------KDNSGRTAMDYAN 186

Query: 126 CHGNVQVVKILTKQD 140
             G  ++ KIL + +
Sbjct: 187 QKGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.7 bits (94), Expect = 6e-04
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 15/67 (22%)

Query: 41  NTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQ----VNAK---GDTPLHLAAKFGHSN 93
            T L   +  ++          +++K    LL++     + K   G T +  A + G++ 
Sbjct: 141 YTALIEAVGLREGNQLYQ----DIVK----LLMENGADQSIKDNSGRTAMDYANQKGYTE 192

Query: 94  IVSFLIE 100
           I   L +
Sbjct: 193 ISKILAQ 199

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  103 bits (258), Expect = 7e-26
 Identities = 40/221 (18%), Positives = 72/221 (32%), Gaps = 26/221 (11%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
           V ++ +TP   AA+      +S L+E   + A       +    TAL      G+ + V+
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLEDRDVDA------VDENGRTALLFVAGLGSDKCVR 94

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
           +L +   D  + + + G T+L+MAA     E+V  L+E    +  E   G TAL  A   
Sbjct: 95  LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 154

Query: 195 FYFENDQT----AADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFL 250
                          I  +   +  +       +A   E I+            +G +  
Sbjct: 155 LKTTPKGNPMQFGRRIGLEK--VINVLEGQVFEYAEVDE-IV--------EKRGKGKDVE 203

Query: 251 HYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
           +            +   +    +     D      L    A
Sbjct: 204 YLVRWKDGGDCEWVKGVH---VAEDVAKDY--EDGLEYAVA 239

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 97.7 bits (244), Expect = 7e-24
 Identities = 42/228 (18%), Positives = 70/228 (30%), Gaps = 39/228 (17%)

Query: 74  QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
           +   +G     +  K GHS         A            +E  T    A    + Q +
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD--------VVSEYETPWWTAARKADEQAL 61

Query: 134 KILTKQ-DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH-EGPNGKTALHAA 191
             L +  D D   + ++ G+T+L   A     + V  L E    + H +   G TALH A
Sbjct: 62  SQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118

Query: 192 AMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVD 243
           A +   E            ADI  +D + +TAL LA            +    +    + 
Sbjct: 119 AGYVRPE---VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR----IG 171

Query: 244 HRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
                 +    V       +I+ K              G    +++  
Sbjct: 172 LEKVINVLEGQVFEYAEVDEIVEK-----------RGKGKDVEYLVRW 208

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 69.2 bits (170), Expect = 8e-14
 Identities = 20/153 (13%), Positives = 36/153 (23%), Gaps = 50/153 (32%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQ 131
           +  +   G T L LA +   +      ++          R    EK   + E       +
Sbjct: 137 IEVEDERGLTALELAREILKTTPKGNPMQFG--------RRIGLEKVINVLEGQVFEYAE 188

Query: 132 VVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAA 191
           V +I+ K            GK   Y+       +       +                  
Sbjct: 189 VDEIVEK---------RGKGKDVEYLVRWKDGGDCEWVKGVH------------------ 221

Query: 192 AMHFYFENDQTAADIADKDRKMTALHLAAGQGH 224
                       A+   KD +   L  A  +  
Sbjct: 222 -----------VAEDVAKDYE-DGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 27/126 (21%)

Query: 178 SHEGPNGKTALHAAAMHFYFENDQTA---------ADIADKDRKMTALHLAAGQGHARTV 228
           S     G             ++  +          AD+  +    T    AA +   + +
Sbjct: 9   SRTAGEGAMEYLIEW-----KDGHSPSWVPSSYIAADVVSEYE--TPWWTAARKADEQAL 61

Query: 229 ETILFLDPKCYELVDHRGWNFLHYAMVSFKLHE--LKILLKNPLARSLIYEGD-NNGNTP 285
                L+ +  + VD  G   L +   +    +  +++L +     + +   D   G T 
Sbjct: 62  S--QLLEDRDVDAVDENGRTALLFV--AGLGSDKCVRLLAEA---GADLDHRDMRGGLTA 114

Query: 286 LHVLAA 291
           LH +AA
Sbjct: 115 LH-MAA 119

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  101 bits (254), Expect = 2e-25
 Identities = 35/222 (15%), Positives = 66/222 (29%), Gaps = 33/222 (14%)

Query: 79  GDTPLHLAAKFGHSNIVSFLI-ERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
           G   +  A           L  E   +          +  +T   +    G   ++    
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIY------ITDMSDTNWWKGTSKGRTGLIPSNY 65

Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYF 197
             +      + +     L+ AA+      + E L+N   V+     G TAL+ A    + 
Sbjct: 66  VAE------QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119

Query: 198 EN-----DQTAADIADKDRK-MTALHLAAGQGHARTVETILFL-----DPKCYELVDHRG 246
           +       Q   ++  +++   TALH AA +G+A  V+    L          +L +   
Sbjct: 120 DIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQ---LLLAKGART---DLRNIEK 173

Query: 247 WNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
                 A  +     LK        R+L    +         
Sbjct: 174 KLAFDMATNAACASLLKKKQGTDAVRTLS---NAEDYLDDED 212

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 81.5 bits (202), Expect = 3e-18
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 12/125 (9%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER--AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
           VN     G T L+ A   GH +IV  L  +   +L         N   +TALH A   G 
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ------QNKLGDTALHAAAWKGY 152

Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALH 189
             +V++L  +        N   K +  MA     + ++ +        +           
Sbjct: 153 ADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDE 211

Query: 190 AAAMH 194
            + + 
Sbjct: 212 DSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 77.3 bits (191), Expect = 9e-17
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 144 PYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTA 203
           P    K G+  ++ A          EL      + +      T               + 
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 204 ADIADKDRKMTALHLAAGQGHARTVETILFLDPKCY-ELVDHRGWNFLHYAMVSFKLHE- 261
                 +     LH AA +G+   +     LD +     +D  G   L++A      H+ 
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLSWLR--ECLDNRVGVNGLDKAGSTALYWA--CHGGHKD 120

Query: 262 -LKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
            +++L   P     + + +  G+T LH  AA
Sbjct: 121 IVEMLFTQPNIE--LNQQNKLGDTALH-AAA 148

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 7/66 (10%), Positives = 17/66 (25%), Gaps = 14/66 (21%)

Query: 71  LLLQ----VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALH 122
           LLL      + +         +A     ++++       A          +N E      
Sbjct: 158 LLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL------SNAEDYLDDE 211

Query: 123 EAVCHG 128
           ++    
Sbjct: 212 DSDLEH 217

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 99.4 bits (249), Expect = 2e-25
 Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 21/164 (12%)

Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
            +     L  AA+ G  + V  L+   A + A       +    T LH A  +G++++V+
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGADVNA------EDASGWTPLHLAAFNGHLEIVE 64

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
           +L K   D   + +  G T L +AA   + E+V  LL+N   V+     G T LH AAM 
Sbjct: 65  VLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF 123

Query: 195 FYFENDQTA-------ADI--ADKDRKMTALHLAAGQGHARTVE 229
            + E            AD+   DK  K TA  ++   G+    E
Sbjct: 124 GHLE---IVEVLLKNGADVNAQDKFGK-TAFDISIDNGNEDLAE 163

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 71.6 bits (177), Expect = 4e-15
 Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 12/101 (11%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           VNA    G TPL LAA FGH  IV  L++  A + A       + E +T LH A   G++
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA------NDMEGHTPLHLAAMFGHL 126

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELL 171
           ++V++L K   D   +++K+GKT+  ++ +    ++  E+L
Sbjct: 127 EIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLA-EIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.8 bits (141), Expect = 2e-10
 Identities = 42/181 (23%), Positives = 61/181 (33%), Gaps = 69/181 (38%)

Query: 114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
            ++    L EA   G    V+IL     D   +E+  G T L++AA   + E+V E+L  
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIV-EVL-- 66

Query: 174 CTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRK-MTALHLAAGQGHARTVETIL 232
              + +                        AD+   D   MT L LAA  GH   VE   
Sbjct: 67  ---LKNG-----------------------ADVNAVDHAGMTPLRLAALFGHLEIVEV-- 98

Query: 233 FLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAI 292
                   L+ + G +                          +   D  G+TPLH LAA+
Sbjct: 99  --------LLKN-GAD--------------------------VNANDMEGHTPLH-LAAM 122

Query: 293 R 293
            
Sbjct: 123 F 123

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.3 bits (101), Expect = 5e-05
 Identities = 29/121 (23%), Positives = 37/121 (30%), Gaps = 49/121 (40%)

Query: 179 HEGPNGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVET 230
           H G +    L  AA       D          AD+  +D    T LHLAA  GH   VE 
Sbjct: 9   HHGSDLGKKLLEAA---RAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV 65

Query: 231 ILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLA 290
                     L+ + G +                          +   D+ G TPL  LA
Sbjct: 66  ----------LLKN-GAD--------------------------VNAVDHAGMTPLR-LA 87

Query: 291 A 291
           A
Sbjct: 88  A 88

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 98.2 bits (246), Expect = 4e-25
 Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
               L  AA+ G  + V  L+   A           +    + LH A  +G+    ++L 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT-------DWLGTSPLHLAAQYGHFSTTEVLL 54

Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYF 197
           +       +  K  +T L+MAA   ++ +V  LL++   V+ +     TALH A  H + 
Sbjct: 55  RAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113

Query: 198 ENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVE 229
           E            AD+  + +   TA  ++   G+    E
Sbjct: 114 E---VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 80.5 bits (200), Expect = 1e-18
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 18/127 (14%)

Query: 75  VNAK--GDTPLHLAAKFGHSNIVSFLIER-----AKLAAWQMMRMTNNEKNTALHEAVCH 127
                 G +PLHLAA++GH +    L+       A+               T LH A   
Sbjct: 28  FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR----------TKVDRTPLHMAASE 77

Query: 128 GNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
           G+  +V++L K   D   +++    T+L+ A E  + E+V  L++    V  +    KTA
Sbjct: 78  GHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA 136

Query: 188 LHAAAMH 194
              +  +
Sbjct: 137 FDISIDN 143

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.0 bits (183), Expect = 3e-16
 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 12/102 (11%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
            +A+     TPLH+AA  GH+NIV  L++  A + A       +  K TALH A  H + 
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA------KDMLKMTALHWATEHNHQ 113

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
           +VV++L K   D  ++++K+ KT+  ++ +    ++  E+L+
Sbjct: 114 EVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLA-EILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 56.2 bits (137), Expect = 6e-10
 Identities = 31/177 (17%), Positives = 49/177 (27%), Gaps = 70/177 (39%)

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSV 177
              L EA   G    V+IL      +  + +  G + L++AA+  +     E+L     +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTT-EVL-----L 54

Query: 178 SHEGPNGKTALHAAAMHFYFENDQTAADIADKDRK-MTALHLAAGQGHARTVETILFLDP 236
                                          + +   T LH+AA +GHA  VE       
Sbjct: 55  RA-----------------------GVSRDARTKVDRTPLHMAASEGHANIVEV------ 85

Query: 237 KCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIR 293
               L+ H G +                          +   D    T LH  A   
Sbjct: 86  ----LLKH-GAD--------------------------VNAKDMLKMTALH-WATEH 110

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =   99 bits (249), Expect = 7e-25
 Identities = 54/218 (24%), Positives = 84/218 (38%), Gaps = 17/218 (7%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
                +LA       +   ++   +          T+ +  TALH A   G+ ++V+ L 
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATR------TDQDSRTALHWACSAGHTEIVEFLL 60

Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYF 197
           +        ++  G + L++AA     E+V  LL     V+    NG T LH AA     
Sbjct: 61  QLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119

Query: 198 ENDQT----AADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHY 252
           E         A+   KD    TA+H AA +G+ + V  +LF         D  G   LH 
Sbjct: 120 EIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI-QDTEGNTPLHL 178

Query: 253 AMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLA 290
           A    ++ E K L+      + IY  +    TPL V  
Sbjct: 179 ACDEERVEEAKFLVTQ---GASIYIENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 89.9 bits (223), Expect = 3e-21
 Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 25/192 (13%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-----AKLAAWQMMRMTNNEKNTALHEAVC 126
                    T LH A   GH+ IV FL++       K          ++   + LH A  
Sbjct: 33  ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK----------DDAGWSPLHIAAS 82

Query: 127 HGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKT 186
            G  ++VK L  +      + N+ G T L+ AA     E+ + LLE   +   +     T
Sbjct: 83  AGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT 141

Query: 187 ALHAAAMHFYFENDQT----AADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYEL 241
           A+H AA     +         A    +D +  T LHLA  +      + ++      Y  
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI- 200

Query: 242 VDHRGWNFLHYA 253
            +      L  A
Sbjct: 201 ENKEEKTPLQVA 212

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 66.0 bits (161), Expect = 9e-13
 Identities = 37/170 (21%), Positives = 61/170 (35%), Gaps = 15/170 (8%)

Query: 148 NKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTA---- 203
                    +A  G+  E+   +L + +  +    + +TALH A    + E         
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTE---IVEFLL 60

Query: 204 ---ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKL 259
                + DKD    + LH+AA  G    V+ +L         V+  G   LHYA    + 
Sbjct: 61  QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRH 119

Query: 260 HELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGN 309
               +LL+     +     D+   T +H  AA    +   I + Y A  N
Sbjct: 120 EIAVMLLEG---GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 97.9 bits (245), Expect = 1e-24
 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 20/164 (12%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIER--AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
               +H  A  G  + +   + +    +         +    T L  A   G ++ V+ L
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNK------PDERGFTPLIWASAFGEIETVRFL 55

Query: 137 TKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFY 196
            +   D P+   K  +++L +A+ G Y+++V  LLE    ++    NG T L  A    +
Sbjct: 56  LEWGAD-PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNH 114

Query: 197 FENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETIL 232
            +            AD+  +     T + LA   G+ +  + I 
Sbjct: 115 VK---CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 11/124 (8%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           VN     G TPL  A+ FG    V FL+E  A             E+ +AL  A   G  
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI------LAKERESALSLASTGGYT 82

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHA 190
            +V +L ++D D     +  G T L  A  G + + V  LL     ++ E  +G T +  
Sbjct: 83  DIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDL 141

Query: 191 AAMH 194
           A   
Sbjct: 142 AVAL 145

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 91.3 bits (228), Expect = 3e-22
 Identities = 30/183 (16%), Positives = 60/183 (32%), Gaps = 29/183 (15%)

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSV 177
           + ++H+    G +  +K   ++  +     ++ G T L  A+     E V  LLE     
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 178 SHEGPNGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVE 229
                  ++AL  A+   Y +             DI   D    T L  A    H + VE
Sbjct: 63  HILAKERESALSLASTGGYTD---IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 230 TILFL-----DPKCYELVDHRGWNFLHYAMVSFKLHE--LKILLKNPLARSLIYEGDNNG 282
               L     D          G+  +  A      +    +++  + + +  +++ +   
Sbjct: 120 ---ALLARGADL---TTEADSGYTPMDLA--VALGYRKVQQVIENH-ILK--LFQSNLVP 168

Query: 283 NTP 285
             P
Sbjct: 169 ADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 65.1 bits (160), Expect = 6e-13
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 15/91 (16%)

Query: 71  LLLQ----VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALH 122
           LLL+    +N     G TPL  A +  H   V  L+ R A L          +   T + 
Sbjct: 87  LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT------EADSGYTPMD 140

Query: 123 EAVCHGNVQVVKILTKQDPDYPYSENKYGKT 153
            AV  G  +V +++        +  N     
Sbjct: 141 LAVALGYRKVQQVIENHILK-LFQSNLVPAD 170

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 97.5 bits (244), Expect = 2e-24
 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 20/160 (12%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           +N     G +PLH A + G S +V  LI R A++         N   +T LH A  HG+ 
Sbjct: 32  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV------MNRGDDTPLHLAASHGHR 85

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHA 190
            +V+ L +   D   + N++G   L+ A      ++  +L+ N   VS     G+  +  
Sbjct: 86  DIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDK 144

Query: 191 AAMHFYFENDQTA----ADIADKDRKMTALHLAAGQGHAR 226
           A         + A     ++               +G  R
Sbjct: 145 AKAPLRELLRERAEKMGQNLNRIP-----YKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 96.7 bits (242), Expect = 3e-24
 Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 16/159 (10%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
               +    + G++  V   ++  +      +   ++   + LH A   G   VV++L  
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTE----NDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60

Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
           +        N+   T L++AA   + ++V +LL+    ++    +G   LH A      +
Sbjct: 61  RGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119

Query: 199 NDQTA-------ADIADKDRK-MTALHLAAGQGHARTVE 229
               A       A ++  ++     +  A         E
Sbjct: 120 ---VAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRE 155

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 79.8 bits (198), Expect = 5e-18
 Identities = 34/187 (18%), Positives = 54/187 (28%), Gaps = 31/187 (16%)

Query: 114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
           + E    +      GN   V++      +     + +G + L+ A     S +V  L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 174 CTSVSHEGPNGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHA 225
              ++       T LH AA H + +            ADI   +      LH A   G  
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRD---IVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118

Query: 226 RTVETILFL-----DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDN 280
           +  E    L           + +  G   +  A     L EL       L       G N
Sbjct: 119 QVAE---DLVANGALV---SICNKYGEMPVDKA--KAPLREL-------LRERAEKMGQN 163

Query: 281 NGNTPLH 287
               P  
Sbjct: 164 LNRIPYK 170

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 95.9 bits (240), Expect = 3e-24
 Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 20/161 (12%)

Query: 78  KGDTPLHLAAKFGHSNIVSFLIER--AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
           +    L  AA  G    V  L+ R      A       N    TAL      G+  +   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDA------LNRFGKTALQVM-MFGSTAIALE 53

Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHF 195
           L KQ    P  ++  G + ++ AA   + + +  L+E+   V+     G   +H A    
Sbjct: 54  LLKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 112

Query: 196 YFENDQTA------ADIADKDRK-MTALHLAAGQGHARTVE 229
           +             +D+  +D + +T L LA  +G    V+
Sbjct: 113 HTA---VVSFLAAESDLHRRDARGLTPLELALQRGAQDLVD 150

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 71.3 bits (176), Expect = 3e-15
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 24/118 (20%)

Query: 71  LLLQ----VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALH 122
            LL+     N +   G +P+H AA+ G  + +  L+E  A +         +      +H
Sbjct: 53  ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV------PDGTGALPIH 106

Query: 123 EAVCHGNVQVVKILTKQ-DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH 179
            AV  G+  VV  L  + D       +  G T L +A +    ++V ++L       H
Sbjct: 107 LAVQEGHTAVVSFLAAESDLH---RRDARGLTPLELALQRGAQDLV-DIL-----QGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 67.8 bits (167), Expect = 5e-14
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 59/186 (31%)

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSV 177
              L  A   G+VQ V+ L  ++  +P + N++GKT+L +   G  + + +ELL+     
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQ---- 57

Query: 178 SHEGPNGKTALHAAAMHFYFENDQTAADIADKDRK-MTALHLAAGQGHARTVETILFLDP 236
                 G                   A    +D    + +H AA  G   T++       
Sbjct: 58  ------G-------------------ASPNVQDTSGTSPVHDAARTGFLDTLKV------ 86

Query: 237 KCYELVDHR---------GWNFLHYAMVSFKLHE--LKILLKNPLARSLIYEGDNNGNTP 285
               LV+H          G   +H A    + H   +  L     +   ++  D  G TP
Sbjct: 87  ----LVEHGADVNVPDGTGALPIHLA--VQEGHTAVVSFLAAE--SD--LHRRDARGLTP 136

Query: 286 LHVLAA 291
           L  LA 
Sbjct: 137 LE-LAL 141

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 95.9 bits (240), Expect = 4e-24
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 15/159 (9%)

Query: 78  KGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
                L  AA  G    ++ L++    + A       N    TAL      GN ++ + L
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNA------QNGFGRTALQVM-KLGNPEIARRL 56

Query: 137 TKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFY 196
             +  + P  +++ G   ++ AA   + + +  LLE    V+ E   G   LH AA   +
Sbjct: 57  LLRGAN-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115

Query: 197 FEN-----DQTAADIADKDRK-MTALHLAAGQGHARTVE 229
                     TA+++  ++ K  TA  LA   G    V 
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 79.3 bits (197), Expect = 5e-18
 Identities = 37/185 (20%), Positives = 65/185 (35%), Gaps = 50/185 (27%)

Query: 112 MTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELL 171
           M        L  A   G+++ +  L + + +   ++N +G+T+L +   G   E+   LL
Sbjct: 1   MAEPW-GNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLG-NPEIARRLL 57

Query: 172 ENCTSVSHEGPNGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQG 223
               +   +   G   +H AA   + +   T        AD+  +D +    LHLAA +G
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLD---TLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114

Query: 224 HARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGN 283
           H R VE           LV H   N                          +   ++ G+
Sbjct: 115 HLRVVEF----------LVKHTASN--------------------------VGHRNHKGD 138

Query: 284 TPLHV 288
           T   +
Sbjct: 139 TACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 73.2 bits (181), Expect = 9e-16
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 10/103 (9%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
            + K   G   +H AA+ G  + +  L+E  A +         +NE N  LH A   G++
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI------EDNEGNLPLHLAAKEGHL 116

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
           +VV+ L K         N  G T+  +A     +E+V  +  N
Sbjct: 117 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 95.5 bits (239), Expect = 6e-24
 Identities = 40/169 (23%), Positives = 61/169 (36%), Gaps = 29/169 (17%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIE------RAKLAAWQMMRMTNNEKNTALHEAVCHG 128
            N++ D  L  AAK G    V  L        R               ++T LH A  + 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI----------EGRQSTPLHFAAGYN 53

Query: 129 NVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
            V VV+ L +   D  ++++K G   L+ A    + E+   L+++   V+       T L
Sbjct: 54  RVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL 112

Query: 189 HAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVE 229
           H AA    +E            AD   K+R   T L L    G     +
Sbjct: 113 HEAAAKGKYE---ICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQD 157

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 207 ADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKIL 265
           A  + +    L  AA  G   TV+ +  +       ++ R    LH+A    ++  ++ L
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 266 LKNPLARSLIYEGDNNGNTPLHVLAA 291
           L++    + ++  D  G  PLH  A 
Sbjct: 62  LQH---GADVHAKDKGGLVPLH-NAC 83

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 96.3 bits (241), Expect = 7e-24
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 30/173 (17%)

Query: 73  LQVNAK---GDTPLHLAAKFGHSNIVSFLIER-----AKLAAWQMMRMTNNEKNTALHEA 124
              N +     TPL +A   G  N +  L+E       K          + E +TAL  A
Sbjct: 26  FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK----------DIEGSTALIWA 75

Query: 125 VCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNG 184
           V +  + + + L  +  +   +++  GKT L  +    YSEM   LLE+  +V+     G
Sbjct: 76  VKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134

Query: 185 KTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVE 229
           +T L  A+ +   E            ADI+ +D   +TA   A   G    ++
Sbjct: 135 ETPLIVASKYGRSE---IVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 92.8 bits (232), Expect = 1e-22
 Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 61/226 (26%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
           ++  G+    +  +   +  + FL    +          ++   T L  A   G    + 
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRN-YR----------DSYNRTPLMVACMLGMENAID 52

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
            L +        ++  G T+L  A +     +  +LL   ++V+ +  +GKT L  + + 
Sbjct: 53  KLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF 111

Query: 195 FYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRG 246
            Y E    +       A++ D++ +  T L +A+  G +  V+           L++  G
Sbjct: 112 GYSE---MSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK----------LLEL-G 157

Query: 247 WNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAI 292
            +                          I   D  G T     A I
Sbjct: 158 AD--------------------------ISARDLTGLTAEA-SARI 176

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 69.3 bits (171), Expect = 3e-14
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 20/105 (19%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-----AKLAAWQMMRMTNNEKNTALHEAVC 126
           VN K   G TPL  +  FG+S +  FL+E       +          N E  T L  A  
Sbjct: 94  VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDR----------NLEGETPLIVASK 143

Query: 127 HGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELL 171
           +G  ++VK L +   D   + +  G T+   A      E++ ++ 
Sbjct: 144 YGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVI-KIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 54.3 bits (132), Expect = 5e-09
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 8/112 (7%)

Query: 183 NGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCY-EL 241
           NG+            +N     +  D   + T L +A   G    ++    ++     E 
Sbjct: 7   NGEIVEKIKDEKSINQNLDFLRNYRDSYNR-TPLMVACMLGMENAID--KLVENFDKLED 63

Query: 242 VDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIR 293
            D  G   L +A+ + +L   + LL      S +   D +G TPL   + I 
Sbjct: 64  KDIEGSTALIWAVKNNRLGIAEKLLSK---GSNVNTKDFSGKTPLM-WSIIF 111

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 96.9 bits (242), Expect = 1e-23
 Identities = 43/214 (20%), Positives = 77/214 (35%), Gaps = 43/214 (20%)

Query: 54  KNGSTKFIGEMLKKCPSLLLQ----VNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAA 106
           K    + + +       LL      V+ +   G+T LH+AA + +      L+E A    
Sbjct: 12  KENDVQALSK-------LLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 107 WQMMRMTNNEKNTALHEAVCHGNVQVVKIL------------TKQDPDYPYSENKYGKTS 154
           ++ M     E  TALH AV + NV +V+ L                   P++   YG+  
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124

Query: 155 LYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE---------------- 198
           L  AA     E+V  L+E+   +  +   G T LH   +                     
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184

Query: 199 NDQTAADIADKDRKMTALHLAAGQGHARTVETIL 232
           + ++   + +     T   LA  +G+    + ++
Sbjct: 185 HLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHLM 217

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 93.3 bits (233), Expect = 6e-23
 Identities = 38/169 (22%), Positives = 57/169 (33%), Gaps = 24/169 (14%)

Query: 74  QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
           +   +G     +  K GHS         A            +E  T    A    + Q +
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV--------VSEYETPWWTAARKADEQAL 60

Query: 134 KILTKQ-DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPN-GKTALHAA 191
             L +  D D   + ++ G+T+L   A     + V  L E    + H     G TALH A
Sbjct: 61  SQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117

Query: 192 AMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETIL 232
           A +   E            ADI  +D + +TAL LA            +
Sbjct: 118 AGYVRPE---VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 163

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 91.4 bits (228), Expect = 3e-22
 Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
           V ++ +TP   AA+      +S L+E   + A       +    TAL      G+ + V+
Sbjct: 40  VVSEYETPWWTAARKADEQALSQLLEDRDVDA------VDENGRTALLFVAGLGSDKCVR 93

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
           +L +   D  + + + G T+L+MAA     E+V  L+E    +  E   G TAL  A   
Sbjct: 94  LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 153

Query: 195 FYFENDQT----AADIADKD 210
                          I  + 
Sbjct: 154 LKTTPKGNPMQFGRRIGLEK 173

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 94.2 bits (235), Expect = 1e-22
 Identities = 34/234 (14%), Positives = 70/234 (29%), Gaps = 34/234 (14%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
           G   L    +       S  I    ++         N      L ++   G   +V+ + 
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKF-------NPLPLALLLDSSLEGEFDLVQRII 57

Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYF 197
            +  D P   N  G T+L+ A    ++E+V  L++   +V+    +G T LH AA     
Sbjct: 58  YEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV 116

Query: 198 ENDQTA-------ADIADKDRK----MTALHLAAGQGHARTVETILFLDPKCYELVDHRG 246
           +            A +                   +G+ +  + +  +  K   +++   
Sbjct: 117 Q---VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM-GIMNKGV 172

Query: 247 WNFLHYAMVSFKL-------HELKILLKNPLARSLIY---EGDNNGNTPLHVLA 290
              L                  + I+ +        +     D  G  P ++L 
Sbjct: 173 IYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 226

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 87.7 bits (218), Expect = 2e-20
 Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 24/165 (14%)

Query: 75  VNAK--GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQ 131
           V         L  ++  G  ++V  +I      +        N+E  TALH AVC G+ +
Sbjct: 31  VKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL------PNDEGITALHNAVCAGHTE 84

Query: 132 VVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSV---SHEGPNGKTAL 188
           +VK L +   +   + +  G T L+ AA     ++   L+E+  +V   ++         
Sbjct: 85  IVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 143

Query: 189 HAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHA 225
                  Y +    +         +   ++  + AL     Q   
Sbjct: 144 CEEMEEGYTQ---CSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD 185

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 87.7 bits (218), Expect = 3e-20
 Identities = 28/222 (12%), Positives = 54/222 (24%), Gaps = 31/222 (13%)

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSV 177
             +L         +                N      L  ++     ++V  ++      
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63

Query: 178 SHEGPNGKTALHAAAMHFYFENDQTA-------ADI--ADKDRKMTALHLAAGQGHARTV 228
           S     G TALH A    + E             ++  AD D   T LH AA   + +  
Sbjct: 64  SLPNDEGITALHNAVCAGHTE---IVKFLVQFGVNVNAADSDGW-TPLHCAASCNNVQVC 119

Query: 229 ETILFL-----DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGN 283
           +   FL             D +        M        + L      +  +   +    
Sbjct: 120 K---FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV---QEKMGIMNKGVI 173

Query: 284 TPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLI 325
             L         E     +    G     +++++    +   
Sbjct: 174 YALWDYEPQNDDE-----LPMKEGDCMTIIHREDEDEIEWWW 210

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 78.4 bits (194), Expect = 5e-17
 Identities = 30/160 (18%), Positives = 46/160 (28%), Gaps = 16/160 (10%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
            +     G T LH A   GH+ IV FL++    + A       +++  T LH A    NV
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA------ADSDGWTPLHCAASCNNV 116

Query: 131 QVVKILTKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL 188
           QV K L +           +           E  Y++    L      +         AL
Sbjct: 117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176

Query: 189 HAAAMHFYFE-NDQTAADIADKDRK---MTALHLAAGQGH 224
                    E   +    +    R+         A     
Sbjct: 177 WDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 25/121 (20%)

Query: 183 NGKTALHAAAMHFYFENDQTA-------ADIADKDRKMTALHLAAGQGHARTVETILFL- 234
            G+ +L            +T          +      +  L  ++ +G    V+    + 
Sbjct: 4   TGQVSLPPGKRT---NLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQ---RII 57

Query: 235 ----DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLA 290
               DP    L +  G   LH A+ +     +K L++       +   D++G TPLH  A
Sbjct: 58  YEVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQF---GVNVNAADSDGWTPLH-CA 110

Query: 291 A 291
           A
Sbjct: 111 A 111

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 89.8 bits (224), Expect = 7e-22
 Identities = 24/164 (14%), Positives = 48/164 (29%), Gaps = 30/164 (18%)

Query: 78  KGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
                L  AA  G    V  L+E  A   A       N+     +      G+ +V ++L
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPNA------PNSYGRRPIQVM-MMGSARVAELL 63

Query: 137 TKQ--DPDYPYSENKYGKTS-LYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM 193
                +P+     +    T  ++ AA   + + ++ L      +      G+  +  A  
Sbjct: 64  LLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE- 119

Query: 194 HFYFENDQTAADI--------ADKDRKMTALHLAAGQGHARTVE 229
               E      D+                   + A +G +   +
Sbjct: 120 ----ELGHR--DVARYLRAAAGGTRGS-NHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 77.5 bits (192), Expect = 2e-17
 Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 27/141 (19%)

Query: 74  QVNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
             NA    G  P+ +    G + +   L+   A+                 +H+A   G 
Sbjct: 37  NPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNC-----ADPATLTRPVHDAAREGF 90

Query: 130 VQVVKILTKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
           +  + +L +     D     + +G+  + +A E  + ++   L             G   
Sbjct: 91  LDTLVVLHRAGARLD---VRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-----RGSNH 142

Query: 188 LHAAAMHFYFENDQTAADIAD 208
               A           +DI D
Sbjct: 143 ARIDAAE-------GPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 71.4 bits (176), Expect = 3e-15
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 18/130 (13%)

Query: 114 NNEKNTALHEAVCHGNVQVVKILTKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELL 171
                  L  A   G V+ V+ L +   +P+   + N YG+  + +   G  + +   LL
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMMMG-SARVAELLL 64

Query: 172 ENCTSVSHEGPNGKT-ALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQ 222
            +    +   P   T  +H AA   + +   T        A +  +D      + LA   
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLD---TLVVLHRAGARLDVRDAWGRLPVDLAEEL 121

Query: 223 GHARTVETIL 232
           GH      + 
Sbjct: 122 GHRDVARYLR 131

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 59.8 bits (146), Expect = 4e-11
 Identities = 28/158 (17%), Positives = 46/158 (29%), Gaps = 30/158 (18%)

Query: 147 ENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTA--- 203
             +     L  AA     E V  LLE   + +     G+  +    M     + + A   
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG----SARVAELL 63

Query: 204 ----ADI--ADKDRKMTALHLAAGQGHARTVETILFL--DPKCYELVDHRGWNFLHYAMV 255
               A+   AD       +H AA +G   T+  +          ++ D  G   +  A  
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL---DVRDAWGRLPVDLA-- 118

Query: 256 SFKLHE--LKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
               H    + L            G   G+    + AA
Sbjct: 119 EELGHRDVARYLRAA--------AGGTRGSNHARIDAA 148

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 17/70 (24%)

Query: 71  LLLQ----VNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHE 123
           +L +    ++ +   G  P+ LA + GH ++  +L   A               +     
Sbjct: 96  VLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA----------GGTRGSNHARI 145

Query: 124 AVCHGNVQVV 133
               G   + 
Sbjct: 146 DAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 38.6 bits (91), Expect = 8e-04
 Identities = 21/124 (16%), Positives = 33/124 (26%), Gaps = 43/124 (34%)

Query: 203 AADIADKDRKMTALHLAAGQGHARTVETILFL--DPKCYELVDHRGWNFLHYAMVSFKLH 260
           AA  + +      L  AA +G    V  +L    +P      +  G   +   M      
Sbjct: 4   AAGSSMEP-SADWLATAAARGRVEEVRALLEAGANP---NAPNSYGRRPIQVMM---MGS 56

Query: 261 E--LKILLKN--------------PL-----------ARSLIYEG------DNNGNTPLH 287
               ++LL +              P+              L   G      D  G  P+ 
Sbjct: 57  ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVD 116

Query: 288 VLAA 291
            LA 
Sbjct: 117 -LAE 119

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 86.7 bits (216), Expect = 4e-21
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
           + +  D     A K G  + V   + +   +        T       LH A   G ++++
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR------TLEGGRKPLHYAADCGQLEIL 56

Query: 134 KILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA 192
           + L  +  D   + +K+  T L  A    +   V  LL      + +GP+G TA  A  
Sbjct: 57  EFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.3 bits (106), Expect = 5e-06
 Identities = 22/123 (17%), Positives = 31/123 (25%), Gaps = 29/123 (23%)

Query: 181 GPNGKTALHAAAMH-------FYFENDQTAADIADKDRK-MTALHLAAGQGHARTVETIL 232
           G         A  +        Y        D+          LH AA  G    +E   
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKG---EDVNRTLEGGRKPLHYAADCGQLEILE--- 57

Query: 233 FL-----DPKCYELVDHRGWNFLHYAMVSFKLHE--LKILLKNPLARSLIYEGDNNGNTP 285
           FL     D       D      L  A   ++ H   +K+LL      +       +G T 
Sbjct: 58  FLLLKGADI---NAPDKHHITPLLSA--VYEGHVSCVKLLLSK---GADKTVKGPDGLTA 109

Query: 286 LHV 288
              
Sbjct: 110 FEA 112

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 88.1 bits (219), Expect = 1e-20
 Identities = 33/169 (19%), Positives = 54/169 (31%), Gaps = 16/169 (9%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
            +     G T LH A    + +IV FLI   A + +       ++   T LH A    + 
Sbjct: 47  PSQPNEEGITALHNAICGANYSIVDFLITAGANVNS------PDSHGWTPLHCAASCNDT 100

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGR--YSEMVIELLENCTSVSHEGPNGKTAL 188
            +   L +       +    G T+       R  Y++    L +   S+         AL
Sbjct: 101 VICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160

Query: 189 HAAAMHFYFE---NDQTAADIADKDRK-MTALHLAAGQGHARTVETILF 233
              +  F  E    +  +  +  +D    T    AA  G    V    F
Sbjct: 161 WDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF 209

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 83.1 bits (206), Expect = 1e-18
 Identities = 33/233 (14%), Positives = 63/233 (27%), Gaps = 66/233 (28%)

Query: 74  QVNAK------GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVC 126
                          L  AA  G   +V   ++     +        N E  TALH A+C
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ------PNEEGITALHNAIC 63

Query: 127 HGNVQVVKILTKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPN- 183
             N  +V  L     + +   S + +G T L+ AA    + + + L+++  ++     + 
Sbjct: 64  GANYSIVDFLITAGANVN---SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120

Query: 184 GKTALHAAAMHF--------YFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLD 235
           G TA      +         Y  + + +  + +    + AL   + +             
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGA-VYALWDYSAEFGD---------- 169

Query: 236 PKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
                                    EL            +   D    T    
Sbjct: 170 -------------------------ELSFREG---ESVTVLRRDGPEETDWWW 194

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 87.9 bits (218), Expect = 3e-20
 Identities = 45/240 (18%), Positives = 75/240 (31%), Gaps = 74/240 (30%)

Query: 76  NAKGDTPLHLAA---KFGHSNIVSFLIERAKLAAWQM------MRMTNNEKNTALHEAVC 126
            + G T L  A    + G +  +  L++  K +                + ++ALH A+ 
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE 99

Query: 127 HGNVQVVKILTKQ------------DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN- 173
             ++Q VK+L +                +  +   +G+  L +AA  +  ++V  LLEN 
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159

Query: 174 --CTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETI 231
               S+      G T LHA  M             AD   + +AL +    G  +     
Sbjct: 160 HQPASLEATDSLGNTVLHALVMI------------ADNSPENSALVIHMYDGLLQMG--- 204

Query: 232 LFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
                                            L        L    ++ G TPL  LAA
Sbjct: 205 -------------------------------ARLCPTV---QLEEISNHQGLTPLK-LAA 229

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 69.8 bits (171), Expect = 8e-14
 Identities = 38/195 (19%), Positives = 58/195 (29%), Gaps = 37/195 (18%)

Query: 119 TALHEAVCHGNVQVVKIL-------TKQDPDYPYSENKYGKTSLYMAAEGRYS--EMVIE 169
             L   V  G  + +  L       +K   D  Y+E   GKT L  A           I 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 170 LLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVE 229
            L                L         +    A    +  +  +ALH+A  +   + V+
Sbjct: 64  PL----------------LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVK 107

Query: 230 ------------TILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYE 277
                              K      + G   L  A  + +   +  LL+NP   + +  
Sbjct: 108 LLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA 167

Query: 278 GDNNGNTPLHVLAAI 292
            D+ GNT LH L  I
Sbjct: 168 TDSLGNTVLHALVMI 182

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 69.4 bits (170), Expect = 9e-14
 Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 22/128 (17%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAA--------------WQMMRMTNNEKNTALHEA 124
           G+ PL LAA     ++V++L+E     A                +M   N+ +N+AL   
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195

Query: 125 VCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNG 184
           +  G +Q+   L           N  G T L +AA+    E+   +L+          +G
Sbjct: 196 MYDGLLQMGARLCPTVQL-EEISNHQGLTPLKLAAKEGKIEIFRHILQR-------EFSG 247

Query: 185 KTALHAAA 192
             A H   
Sbjct: 248 AAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 41  NTILHINIISQKRKNGSTKF----------IGEMLKKCPSLLLQVNAKGDTPLHLAAKFG 90
           NT+LH  ++       ++            +G  L     L    N +G TPL LAAK G
Sbjct: 173 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 232

Query: 91  HSNIVSFLIER 101
              I   +++R
Sbjct: 233 KIEIFRHILQR 243

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 10/65 (15%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
           N+  ++ L +    G   + + L    +L       ++N++  T L  A   G +++ + 
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQL-----EEISNHQGLTPLKLAAKEGKIEIFRH 239

Query: 136 LTKQD 140
           + +++
Sbjct: 240 ILQRE 244

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 87.9 bits (218), Expect = 4e-20
 Identities = 51/279 (18%), Positives = 85/279 (30%), Gaps = 55/279 (19%)

Query: 42  TILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAK----GDTPLHLA---AKFGHSNI 94
             +       +      + +   L++    L     K    G T L  A      G ++ 
Sbjct: 15  RSIFD--AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 95  VSFLIERA------KLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQ--------- 139
           ++ L++ A      K         +  +  TALH A+   N+ +V +L +          
Sbjct: 73  IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAAN 132

Query: 140 ----DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN---CTSVSHEGPNGKTALHAAA 192
                         +G+  L +AA      +V  LL+N      +S     G T LHA  
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV 192

Query: 193 MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHY 252
                  D T    +     M    L  G          L    K  E+ + +G   L  
Sbjct: 193 EVADNTVDNTKFVTS-----MYNEILILGAK--------LHPTLKLEEITNRKGLTPLAL 239

Query: 253 AMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
           A  S K+  L  +L+           + +     H  AA
Sbjct: 240 AASSGKIGVLAYILQR----------EIHEPECRH-AAA 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 81.8 bits (202), Expect = 6e-18
 Identities = 49/257 (19%), Positives = 81/257 (31%), Gaps = 46/257 (17%)

Query: 11  FNAAAAGDAETFKR--NTTSDEIESLLTAQTKN-----TILHINIISQKRKNGST-KFIG 62
           F+A A  + +  +          + L  ++ K+     T L   +++       T   + 
Sbjct: 18  FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLL 77

Query: 63  EMLKKCPSLLLQVNA-------KGDTPLHLAAKFGHSNIVSFLIER-----AK----LAA 106
           ++ +K  SL   VNA       KG T LH+A +  +  +V+ L+E      A        
Sbjct: 78  DVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK 137

Query: 107 WQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDY--PYSENKYGKTSLYMAAEG--- 161
               R         L  A C   + +VK L +         + +  G T L+   E    
Sbjct: 138 KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADN 197

Query: 162 ------RYSEMVIELLENCTSVSHEGP-------NGKTALHAAAMHFYFENDQTAADIAD 208
                   + M  E+L     +             G T L  AA           A I  
Sbjct: 198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG---VLAYILQ 254

Query: 209 KDRK-MTALHLAAGQGH 224
           ++       H AA   H
Sbjct: 255 REIHEPECRHAAAHHHH 271

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 89.2 bits (221), Expect = 6e-20
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 26/221 (11%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
           + A+      LAA+ GH ++++ L E    A  ++M M   E   A   A  +G++ V+ 
Sbjct: 124 IQAENYQAFRLAAENGHLHVLNRLCEL---APTEIMAMIQAENYHAFRLAAENGHLHVLN 180

Query: 135 ILTKQDPDYPYSE-NKYGKTSLYMAAEGR-YSEMVIELLENCTSVSHEGPNGKTALHAAA 192
            L +  P    +        +   AA GR +  ++  LL+    +++   +         
Sbjct: 181 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV 240

Query: 193 MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHY 252
             F       A  +        A  L+   G    V           +    +G+  L  
Sbjct: 241 NPFI------ARHVNRLKEMHDAFKLSNPDGVFDLVT----------KSECLQGFYMLRN 284

Query: 253 AM---VSFKLHELKILLKNPLARSL--IYEGDNNGNTPLHV 288
            +       L +++ LL  P  ++L        + N  L +
Sbjct: 285 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 325

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 67.7 bits (165), Expect = 9e-13
 Identities = 32/189 (16%), Positives = 52/189 (27%), Gaps = 39/189 (20%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHE-AVCHGNVQVV 133
           + A+      LAA+ GH ++++ L E A     +   M   E   A    AV  G+  V+
Sbjct: 159 IQAENYHAFRLAAENGHLHVLNRLCELA---PTEATAMIQAENYYAFRWAAVGRGHHNVI 215

Query: 134 KILTKQDPDYPYSENK-----------------YGKTSLYMAAEGRYSEMVIELLENCTS 176
             L        Y+E                        ++ A +    + V +L+     
Sbjct: 216 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTK--- 272

Query: 177 VSHEGPNGKTALHAAA------------MHFYFENDQTAADIADKDRK-MTALHLAAGQG 223
              E   G   L                        +  A  A         L LA   G
Sbjct: 273 --SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG 330

Query: 224 HARTVETIL 232
           +      +L
Sbjct: 331 NQGACALLL 339

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 7/100 (7%)

Query: 77  AKGDTPLHLAAKFGHSNI---VSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
            +G   L    +     +   + FL+    + A         + N  L  A+  GN    
Sbjct: 276 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC 335

Query: 134 KILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
            +L         ++      + Y+   G   ++    LE+
Sbjct: 336 ALLLSIPSVLALTK----ANNYYINETGGRLDLRAVALEH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 7/62 (11%), Positives = 18/62 (29%), Gaps = 8/62 (12%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
           +    +  L LA + G+    + L+    +            K    +     G + +  
Sbjct: 315 IPGDANELLRLALRLGNQGACALLLSIPSV--------LALTKANNYYINETGGRLDLRA 366

Query: 135 IL 136
           + 
Sbjct: 367 VA 368

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 83.6 bits (208), Expect = 9e-20
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
           N +G+T LH+A+  G    V +L++  +           ++   T LHEA  HG+++VV+
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNV------KDHAGWTPLHEACNHGHLKVVE 60

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
           +L +       +      + L+ AA+  + ++V  LL    S +     G   +      
Sbjct: 61  LLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 77.8 bits (193), Expect = 8e-18
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 12/128 (9%)

Query: 113 TNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
           TN+   T LH A   G++  V+ L +   D P  ++  G T L+ A    + ++V  LL+
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 173 NCTSVSHEGPNGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGH 224
           +   V+  G    + LH AA + + +            A     +   +  +     +  
Sbjct: 65  HKALVNTTGYQNDSPLHDAAKNGHVD---IVKLLLSYGASRNAVNIFGLRPVDYTDDESM 121

Query: 225 ARTVETIL 232
              +    
Sbjct: 122 KSLLLLPE 129

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 75.5 bits (187), Expect = 5e-17
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 15/111 (13%)

Query: 71  LLLQ----VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALH 122
            LLQ     N K   G TPLH A   GH  +V  L++  A +        T  + ++ LH
Sbjct: 28  YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT------TGYQNDSPLH 81

Query: 123 EAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
           +A  +G+V +VK+L         + N +G   +    +     +++   +N
Sbjct: 82  DAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 57.0 bits (139), Expect = 2e-10
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 14/78 (17%)

Query: 71  LLLQ----VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALH 122
           LLLQ    VN      D+PLH AAK GH +IV  L+   A   A       N      + 
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA------VNIFGLRPVD 114

Query: 123 EAVCHGNVQVVKILTKQD 140
                    ++ +  K +
Sbjct: 115 YTDDESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 48.2 bits (116), Expect = 3e-07
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 19/95 (20%)

Query: 204 ADIADKDRKMTALHLAAGQGHARTVETILFL-----DPKCYELVDHRGWNFLHYAMVSFK 258
            D     R  T LH+A+ +G   +VE   +L     DP    + DH GW  LH A     
Sbjct: 2   IDPFTNHRGETLLHIASIKGDIPSVE---YLLQNGSDP---NVKDHAGWTPLHEA--CNH 53

Query: 259 LHE--LKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
            H   +++LL++   ++L+       ++PLH  AA
Sbjct: 54  GHLKVVELLLQH---KALVNTTGYQNDSPLH-DAA 84

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 80.9 bits (201), Expect = 5e-19
 Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 12/119 (10%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
           G TPLHLAA+ GH  +V  L+E  A + A       +    T LH A  +G+++VVK+L 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNA------KDKNGRTPLHLAARNGHLEVVKLLL 55

Query: 138 KQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
           +   D +   +++K G+T L++AA   + E+V  LLE    V+ +  NG+T LH AA +
Sbjct: 56  EAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 111

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 71.6 bits (177), Expect = 1e-15
 Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 11/103 (10%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           VNAK   G TPLHLAA+ GH  +V  L+E  A + A       +    T LH A  +G++
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA------KDKNGRTPLHLAARNGHL 81

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
           +VVK+L +   D   +++K G+T L++AA   + E+V  LLE 
Sbjct: 82  EVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 55.8 bits (136), Expect = 5e-10
 Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 71/176 (40%)

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSV 177
            T LH A  +G+++VVK+L +   D   +++K G+T L++AA   + E+V +LL     +
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVV-KLL-----L 55

Query: 178 SHEGPNGKTALHAAAMHFYFENDQTAADI--ADKDRKMTALHLAAGQGHARTVETILFLD 235
                                     AD+   DK+ + T LHLAA  GH   V+      
Sbjct: 56  EAG-----------------------ADVNAKDKNGR-TPLHLAARNGHLEVVKL----- 86

Query: 236 PKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
                L++  G +                          +   D NG TPLH LAA
Sbjct: 87  -----LLEA-GAD--------------------------VNAKDKNGRTPLH-LAA 109

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 78.6 bits (195), Expect = 5e-18
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 17/127 (13%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           ++      D  L  AA  G    V  L+E  A   A       N      +      G+ 
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA------LNRFGRRPIQVM-MMGSA 57

Query: 131 QVVKILTKQ--DPDYPYSENKYGKTS-LYMAAEGRYSEMVIELLENCTSVSHEGPNGKTA 187
           QV ++L     +P+     +    T  ++ AA   + + ++ L      +      G+  
Sbjct: 58  QVAELLLLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114

Query: 188 LHAAAMH 194
           +  A   
Sbjct: 115 VDLAEEQ 121

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 66.7 bits (164), Expect = 9e-14
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 11/104 (10%)

Query: 74  QVNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGN 129
             NA    G  P+ +    G + +   L+   A+                 +H+A   G 
Sbjct: 37  DPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC-----ADPATLTRPVHDAAREGF 90

Query: 130 VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
           +  + +L +         + +G+  + +A E  + ++   L   
Sbjct: 91  LDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 62.1 bits (152), Expect = 4e-12
 Identities = 31/180 (17%), Positives = 48/180 (26%), Gaps = 71/180 (39%)

Query: 114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
               +  L  A   G V+ V+ L +   D P + N++G+  + +   G     V ELL  
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMMGSAQ--VAELL-- 63

Query: 174 CTSVSHEGPNGKTALHAAAMHFYFENDQTAADI--ADKDRKMTALHLAAGQGHARTVETI 231
              + H                        A+   AD       +H AA +G   T+   
Sbjct: 64  ---LLHG-----------------------AEPNCADPATLTRPVHDAAREGFLDTLVV- 96

Query: 232 LFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
                    L    G                            +   D  G  P+  LA 
Sbjct: 97  ---------LHRA-GAR--------------------------LDVCDAWGRLPVD-LAE 119

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 54.8 bits (133), Expect = 1e-09
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 15/81 (18%)

Query: 71  LLLQ----VNAK---GDT-PLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTAL 121
           LLL      N       T P+H AA+ G  + +  L    A+L         +      +
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV------CDAWGRLPV 115

Query: 122 HEAVCHGNVQVVKILTKQDPD 142
             A   G+  + + L     D
Sbjct: 116 DLAEEQGHRDIARYLHAATGD 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 77.0 bits (191), Expect = 2e-17
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
            +     L  AA+ G  + V  L+   A + A       +    T L+ A  HG++++V+
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMANGADVNA------KDEYGLTPLYLATAHGHLEIVE 64

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
           +L K   D   + +  G T L++AA   + E+   LL++   V+ +   GKTA   +  +
Sbjct: 65  VLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN 123

Query: 195 FYFE 198
              +
Sbjct: 124 GNED 127

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 68.2 bits (168), Expect = 3e-14
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 12/101 (11%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           VNAK   G TPL+LA   GH  IV  L++  A + A       +    T LH A   G++
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA------VDAIGFTPLHLAAFIGHL 93

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELL 171
           ++ ++L K   D   +++K+GKT+  ++      ++  E+L
Sbjct: 94  EIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLA-EIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 55.9 bits (136), Expect = 6e-10
 Identities = 36/179 (20%), Positives = 55/179 (30%), Gaps = 69/179 (38%)

Query: 114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
            ++    L EA   G    V+IL     D   ++++YG T LY+A    + E+V E+L  
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIV-EVL-- 66

Query: 174 CTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDR-KMTALHLAAGQGHARTVETIL 232
              + +                        AD+   D    T LHLAA  GH    E   
Sbjct: 67  ---LKNG-----------------------ADVNAVDAIGFTPLHLAAFIGHLEIAEV-- 98

Query: 233 FLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
                   L+ H G +                          +   D  G T    ++ 
Sbjct: 99  --------LLKH-GAD--------------------------VNAQDKFGKTAFD-ISI 121

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 28/121 (23%), Positives = 37/121 (30%), Gaps = 49/121 (40%)

Query: 179 HEGPNGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVET 230
           H G +    L  AA     +            AD+  KD   +T L+LA   GH   VE 
Sbjct: 9   HHGSDLGKKLLEAARAGQDD---EVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEV 65

Query: 231 ILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLA 290
                     L+ + G +                          +   D  G TPLH LA
Sbjct: 66  ----------LLKN-GAD--------------------------VNAVDAIGFTPLH-LA 87

Query: 291 A 291
           A
Sbjct: 88  A 88

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 75.9 bits (188), Expect = 3e-17
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 9/117 (7%)

Query: 75  VNAK-GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQV 132
             +K G+TPLH AAK GH+  V  L+ + A + A       + + NT LH A  +G+ ++
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA------RSKDGNTPLHLAAKNGHAEI 57

Query: 133 VKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALH 189
           VK+L  +  D   + +K G T  ++A +  + E+V  L      V+          H
Sbjct: 58  VKLLLAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 60.9 bits (149), Expect = 6e-12
 Identities = 32/175 (18%), Positives = 56/175 (32%), Gaps = 68/175 (38%)

Query: 114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
           + + NT LH A  +G+ + VK L  +  D   + +K G T L++AA+  ++E+V +LL  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIV-KLL-- 61

Query: 174 CTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRK-MTALHLAAGQGHARTVETIL 232
              ++                         AD+  + +   T  HLA   GH   V+   
Sbjct: 62  ---LAKG-----------------------ADVNARSKDGNTPEHLAKKNGHHEIVKL-- 93

Query: 233 FLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLH 287
                   L    G +                          +       +   H
Sbjct: 94  --------LDAK-GAD--------------------------VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 45.8 bits (110), Expect = 1e-06
 Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 20/95 (21%)

Query: 204 ADIADKDRKMTALHLAAGQGHARTVETILFL-----DPKCYELVDHRGWNFLHYAMVSFK 258
                KD   T LH AA  GHA  V+    L     D          G   LH A  +  
Sbjct: 2   HMWGSKDGN-TPLHNAAKNGHAEEVK---KLLSKGADV---NARSKDGNTPLHLA--AKN 52

Query: 259 LHE--LKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
            H   +K+LL      + +     +GNTP H LA 
Sbjct: 53  GHAEIVKLLLAK---GADVNARSKDGNTPEH-LAK 83

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 77.5 bits (191), Expect = 2e-16
 Identities = 40/253 (15%), Positives = 81/253 (32%), Gaps = 48/253 (18%)

Query: 11  FNAAAAGDAETFKRNTTSDEIESLLT------------AQTKNTILHINIISQKR-KNGS 57
           F+  + G  +  +       +  LLT              T  T L   +++    +N +
Sbjct: 10  FDIVSRGSPDGLE-----GLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 58  TKFIGEMLKKCPSLLLQVNA-------KGDTPLHLAAKFGHSNIVSFLI-------ERAK 103
              + ++ +K  ++   +N+       +G T LH+A +    + V  L+        +A+
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 104 LAAWQMMRMTNNEKN--TALHEAVCHGNVQVVKILTKQDPDY--PYSENKYGKTSLYMAA 159
              +Q              L  A C     +V  LT+          ++  G T L+   
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 160 EGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLA 219
               ++   E  +  T +          L   A       D     + + D   + L +A
Sbjct: 185 A--IADNTRENTKFVTKM------YDLLLIKCA---KLFPDTNLEALLNNDGL-SPLMMA 232

Query: 220 AGQGHARTVETIL 232
           A  G     + I+
Sbjct: 233 AKTGKIGIFQHII 245

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 70.2 bits (172), Expect = 5e-14
 Identities = 37/184 (20%), Positives = 59/184 (32%), Gaps = 40/184 (21%)

Query: 150 YGKTSLYMAAEGRYSEMVIELLE-------NCTSVSHEGPN-GKTALHAAAMHFYFENDQ 201
           + +  L+        + +  LL          T      P+ GKT L  A ++     + 
Sbjct: 4   FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND 63

Query: 202 TA------------------ADIADKDRK-MTALHLAAGQGHARTVE------------- 229
           T                   +   D   +  TALH+A  +     VE             
Sbjct: 64  TIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123

Query: 230 TILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVL 289
              F  PK      + G   L  A  + + H +  L +N   ++ +   D+ GNT LH L
Sbjct: 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183

Query: 290 AAIR 293
            AI 
Sbjct: 184 VAIA 187

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 69.4 bits (170), Expect = 9e-14
 Identities = 42/251 (16%), Positives = 69/251 (27%), Gaps = 64/251 (25%)

Query: 81  TPLHLAAKFG----HSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAV---CHGNVQV 132
             L      G       ++SFL+    +L   +    +  +  T L +A+     G    
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGK--TCLPKALLNLSAGRNDT 64

Query: 133 VKILTKQDPDYPY----------SENKYGKTSLYMAAEGRYSEMVIELLEN--------- 173
           + IL                        G+T+L++A E R    V  L+E          
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 174 -----CTSVSHEGPNGKTALHAAAMHFYFE-------NDQTAADIADKDRK-MTALHLAA 220
                          G+  L  AA             N    AD+  +D +  T LH   
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 221 GQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDN 280
                    T        Y+L+  +                           +L    +N
Sbjct: 185 AIADNTRENTKFVTK--MYDLLLIKCAKLFP-------------------DTNLEALLNN 223

Query: 281 NGNTPLHVLAA 291
           +G +PL  +AA
Sbjct: 224 DGLSPLM-MAA 233

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 21/126 (16%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGN--------- 129
           G+ PL LAA     +IV +L E     A   +R  ++  NT LH  V   +         
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQA--DLRRQDSRGNTVLHALVAIADNTRENTKFV 197

Query: 130 VQVVKILTKQDPD------YPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPN 183
            ++  +L  +              N  G + L MAA+     +   ++    +       
Sbjct: 198 TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD----AA 253

Query: 184 GKTALH 189
                H
Sbjct: 254 AHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 10/71 (14%)

Query: 41  NTILHINIISQKRKNGSTKFIGEM----------LKKCPSLLLQVNAKGDTPLHLAAKFG 90
           NT+LH  +        +TKF+ +M          L    +L   +N  G +PL +AAK G
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236

Query: 91  HSNIVSFLIER 101
              I   +I R
Sbjct: 237 KIGIFQHIIRR 247

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 71.8 bits (177), Expect = 6e-16
 Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
           + +     L  AA+ G  + V  L+   A +AA       +   +T LH A  +G+++VV
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILMANGADVAA------KDKNGSTPLHLAARNGHLEVV 73

Query: 134 KILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
           K+L +   D   +++K+GKT+  ++ +    + + E+L+
Sbjct: 74  KLLLEAGAD-VXAQDKFGKTAFDISIDNGNED-LAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 11/114 (9%)

Query: 86  AAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYP 144
            +   H +  S L+ R + +          ++    L EA   G    V+IL     D  
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM---------GSDLGKKLLEAARAGQDDEVRILMANGAD-V 50

Query: 145 YSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
            +++K G T L++AA   + E+V  LLE    V  +   GKTA   +  +   +
Sbjct: 51  AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNED 104

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 70.1 bits (173), Expect = 2e-15
 Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 8/96 (8%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
           G TPLHLAA+ GH  +V  L+E  A + A       +    T LH A  +G+++VVK+L 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNA------KDKNGRTPLHLAARNGHLEVVKLLL 55

Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
           +   D   +++K G+T L++AA   + E+V  LLE 
Sbjct: 56  EAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 57.0 bits (139), Expect = 8e-11
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 10/66 (15%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
           VNAK   G TPLHLAA+ GH  +V  L+E  A + A       +    T LH A  +G++
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA------KDKNGRTPLHLAARNGHL 81

Query: 131 QVVKIL 136
           +VVK+L
Sbjct: 82  EVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 33/117 (28%), Positives = 43/117 (36%), Gaps = 49/117 (41%)

Query: 183 NGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAGQGHARTVETILFL 234
           NG+T LH AA + + E            AD+  KD+   T LHLAA  GH   V+     
Sbjct: 1   NGRTPLHLAARNGHLE---VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL---- 53

Query: 235 DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA 291
                 L++  G +                          +   D NG TPLH LAA
Sbjct: 54  ------LLEA-GAD--------------------------VNAKDKNGRTPLH-LAA 76

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.0 bits (95), Expect = 7e-05
 Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 3/29 (10%)

Query: 75  VNAK---GDTPLHLAAKFGHSNIVSFLIE 100
           VNAK   G TPLHLAA+ GH  +V  L+E
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.8 bits (173), Expect = 6e-14
 Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 40/222 (18%)

Query: 63  EMLKKCPSLLLQVNAKGD----TPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEK 117
           E+    P+  L +N   D    TPLH      +  +V  L++  +           +N  
Sbjct: 111 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY------GDNMG 164

Query: 118 NTALHEAVCHGN---VQVVKILTKQDPDYPYSENKYGKTSLYMAAEGR-----------Y 163
            + L +AV   N       + L          E+   +T L+                 Y
Sbjct: 165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY 224

Query: 164 SEMVIELL-ENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKM--------- 213
            ++++  + +        G N K +          ++     D+      M         
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD 284

Query: 214 TALHLAAGQGHARTVETILFL--DPKCYELVDHRGWNFLHYA 253
           T L++AA  G+   V+ +L    DP    + +  G   + + 
Sbjct: 285 TCLNIAARLGNISIVDALLDYGADP---FIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 69.7 bits (170), Expect = 2e-13
 Identities = 30/247 (12%), Positives = 69/247 (27%), Gaps = 27/247 (10%)

Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQ-VVK 134
             K +  L          + + L   +               N           +Q V  
Sbjct: 60  KMKLEAFLQRLLFPEIQEMPTSLNNDSS-----NRNSEGGSSNQQQQHVSFDSLLQEVND 114

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
                  +     +++G T L+        E+V  L+++ ++  +    G++ L  A   
Sbjct: 115 AFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS 174

Query: 195 FYFENDQT--------AADIADKDRK-MTALHLAAGQGHART------------VETILF 233
               +  T           +  +D    T LH                      +  I+ 
Sbjct: 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234

Query: 234 LDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIR 293
              +  +   +   +  +      K   L+ L    +  +++   D+NG+T L++ A + 
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294

Query: 294 PKEFFKI 300
                  
Sbjct: 295 NISIVDA 301

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 22/170 (12%), Positives = 48/170 (28%), Gaps = 27/170 (15%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV---- 130
            +  G++ L  A K  ++                 + + ++   T LH  +    +    
Sbjct: 160 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLY-PCLILEDSMNRTILHHIIITSGMTGCS 218

Query: 131 --------QVVKILTKQDPDYPYSENKYGKTSLYMAAEGR---YSEMVIELLENCTSVSH 179
                    ++  + K+      S     ++        R     E +         ++ 
Sbjct: 219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 278

Query: 180 EGPNGKTALHAAAMHFYFENDQTA-------ADIADKDRK-MTALHLAAG 221
           +  NG T L+ AA      N           AD    ++  +  +   AG
Sbjct: 279 QDSNGDTCLNIAARL---GNISIVDALLDYGADPFIANKSGLRPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 10/148 (6%)

Query: 55  NGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSN--------IVSFLIERAKLAA 106
           N  +     +L      L+  ++   T LH                  +  L+       
Sbjct: 177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 236

Query: 107 WQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPY--SENKYGKTSLYMAAEGRYS 164
            + ++   NEK +  ++        +++ L  +        +++  G T L +AA     
Sbjct: 237 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 296

Query: 165 EMVIELLENCTSVSHEGPNGKTALHAAA 192
            +V  LL+          +G   +   A
Sbjct: 297 SIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 50.4 bits (120), Expect = 4e-07
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 8/126 (6%)

Query: 41  NTILHINIISQKRKNGST------KFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNI 94
            TILH  II+      S         +   + K  +  +Q                  + 
Sbjct: 202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261

Query: 95  VSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTS 154
           +   ++   + A  M+   ++  +T L+ A   GN+ +V  L     D P+  NK G   
Sbjct: 262 ILENLDLKWIIA-NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRP 319

Query: 155 LYMAAE 160
           +   A 
Sbjct: 320 VDFGAG 325

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 19/172 (11%), Positives = 41/172 (23%), Gaps = 19/172 (11%)

Query: 116 EKNTALHEAVCHGNVQVVKILTKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
            +   +  A   G  +    L ++  +      ++      L    +    ++ + L+  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 174 CTSVSHEGPNGKTALHAAAMHFYFENDQTA----------ADIADKDRK-MTALHLAAGQ 222
              +      G T           +   T           ADI    +     +      
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 223 GHARTVETILFLDPKCYE------LVDHRGWNFLHYAMVSFKLHELKILLKN 268
                 E I        +      + D  G   L +     K   LK++   
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 27/200 (13%), Positives = 61/200 (30%), Gaps = 53/200 (26%)

Query: 2   NPISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTA-------QTKNTILHINIISQKRK 54
           N +S Y     AA  G  E F           L            K+ IL+  +     +
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLE---------LFEKGYEDKESVLKSNILYDVL-----R 47

Query: 55  NGSTKFIGEMLKKCPSLLLQ----VNAK---GDTPLHLAAKFGHSNIVS------FLIER 101
           N + +   ++       L+     + ++   G T      + G ++I          +E+
Sbjct: 48  NNNDEARYKISM----FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK 103

Query: 102 -AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK-------ILTKQDPDYPYSENKYGKT 153
            A + A              + + + +  V   +       I ++        ++K+G T
Sbjct: 104 GADITA------LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDKWGLT 156

Query: 154 SLYMAAEGRYSEMVIELLEN 173
           +L      +    +  + + 
Sbjct: 157 ALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 17/156 (10%), Positives = 28/156 (17%), Gaps = 45/156 (28%)

Query: 146 SENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAAD 205
           S       ++  AA     E  +EL E            K+ +                 
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKES--VLKSNIL---------------- 42

Query: 206 IADKDRKMTALHLAAGQGHARTVETILFL-----DPKCYELVDHRGWNFLHYAMVSFKLH 260
                     L     +   +      FL     D K        G              
Sbjct: 43  -------YDVLRNNNDEARYKISM---FLINKGADIKS---RTKEGTTLFFPL--FQGGG 87

Query: 261 ELKILLKNPLARSLIYEG------DNNGNTPLHVLA 290
              I     L +  + +G             +    
Sbjct: 88  N-DITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 13/91 (14%)

Query: 207 ADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILL 266
           ++   +   +  AA  G           +    +       N L+       L       
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFL--ELFEKGYEDKESVLKSNILYDV-----LRNNNDEA 53

Query: 267 KNPLARSLIYEG------DNNGNTPLHVLAA 291
           +  ++  LI +G         G T    L  
Sbjct: 54  RYKISMFLINKGADIKSRTKEGTTLFFPLFQ 84

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 14/106 (13%)

Query: 76  NAKGDTPLHLAAKFGHSN---IVSFLIERAKLAAWQM--MRMTNNEKNTALHEAVCHGNV 130
            A  +  LHLA K  +     +V F+I            +     + NTALH A  +   
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDFII-------QNGGHLDAKAADGNTALHYAALYNQP 220

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTS 176
             +K+L K       + N+ G+T+L +A +  + E   ELLE   +
Sbjct: 221 DCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECE-ELLEQAQA 264

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 68  CPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAW--QMMRMTNNEKNTALHEAV 125
            P       A  +  LHLA K    N  S  +            +     + NTALH A 
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVA--NQASLPL--VDFIIQNGGHLDAKAADGNTALHYAA 234

Query: 126 CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENC 174
            +     +K+L K       + N+ G+T+L +A +  + E   ELLE  
Sbjct: 235 LYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECE-ELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 214 TALHLAAGQGHARTVETILFLDPKCYEL--VDHRGWNFLHYAMVSFKLHELKILLKNPLA 271
             LHLA    +  ++  + F+      L      G   LHYA +  +   LK+LLK    
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG--- 248

Query: 272 RSLIYEGDNNGNTPLHV 288
           R+L+   +  G T L +
Sbjct: 249 RALVGTVNEAGETALDI 265

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 26/171 (15%)

Query: 101 RAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKY-----GKTSL 155
            AK    +  R     +   L  A+C+ ++  V        D+             +  L
Sbjct: 136 MAKYVEHRFAR-RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVL 194

Query: 156 YMA---AEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTA--------- 203
           ++A   A      +V  +++N   +  +  +G TALH AA++     +Q           
Sbjct: 195 HLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALY-----NQPDCLKLLLKGR 249

Query: 204 ADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDH--RGWNFLH 251
           A +   +    TAL +A  + H    E +       +    H    W    
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVIST 300

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 30/187 (16%), Positives = 57/187 (30%), Gaps = 19/187 (10%)

Query: 108 QMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSEN----KYGKTSLYMAAEGRY 163
            + +   N     + E           +      D    ++    KY +           
Sbjct: 71  LLAKNIGNAGFNEIMECCLPSED---PVKPNPGSDMIARKDYITAKYMERRYARKKHADT 127

Query: 164 SEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQG 223
           +  +  L E   +    G     A            +         +   TALHLA    
Sbjct: 128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGH-------EPDETALHLAVRSV 180

Query: 224 HARTVETILFL--DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNN 281
              ++  + FL  +    +    +G   LHY  ++     LK+LL+    ++ I   + +
Sbjct: 181 DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG---KASIEIANES 237

Query: 282 GNTPLHV 288
           G TPL +
Sbjct: 238 GETPLDI 244

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 41  NTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIE 100
            T LH+   + +  + ++  I + L +    L +   KG T LH      ++  +  L+ 
Sbjct: 170 ETALHL---AVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226

Query: 101 R-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
             A +         N    T L  A    +    ++LT+
Sbjct: 227 GKASIEI------ANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 24/117 (20%)

Query: 151 GKTSLYMA---AEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTA---- 203
            +T+L++A    +     +V  L++N  ++  +   G TALH   +      D       
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT-----DNAECLKL 223

Query: 204 -----ADIADKDR-KMTALHLAAGQGHARTVETILFLDPKCYELVDHR----GWNFL 250
                A I   +    T L +A    H    E  L           H      W  L
Sbjct: 224 LLRGKASIEIANESGETPLDIAKRLKHEHCEE--LLTQALSGRFNSHVHVEYEWRLL 278

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 2/119 (1%)

Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
            AK  +            ++    +   L     +   +    TALH AV   +   + I
Sbjct: 128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 187

Query: 136 --LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA 192
                Q+      +   G T+L+       +E +  LL    S+     +G+T L  A 
Sbjct: 188 VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 58/440 (13%), Positives = 129/440 (29%), Gaps = 133/440 (30%)

Query: 8   PNFFNAAAAGDAETFKRNT-TSDEIESLLTAQTK--NTILHINIISQKRKNGSTKFIGEM 64
             F +     D +   ++  + +EI+ ++ ++     T+     +  K++    KF+ E+
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 65  LKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKL-------AAWQMMRMTNNEK 117
           L+     L+       +P+    +        ++ +R +L       A + + R+   + 
Sbjct: 87  LRINYKFLM-------SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL---QP 136

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKY---------GKTSLYMAAE-------- 160
              L +A           L +  P       K          GKT +  A +        
Sbjct: 137 YLKLRQA-----------LLELRP------AKNVLIDGVLGSGKTWV--ALDVCLSYKVQ 177

Query: 161 ------------GRYS--EMVIELLEN-CTSVSHEGPNGKTALHAAAMHFYFENDQTAAD 205
                          +  E V+E+L+     +     +         +  +    +    
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 206 IADKDRKMTALHLAAGQGHARTVETILFLDPKCYELV---DHRGWNFL------HYAMV- 255
           +  K  +   L L     + +  +     +  C  L+     +  +FL      H ++  
Sbjct: 238 LKSKPYENCLLVLL----NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 256 ---SFKLHE-LKILLK----------------NPLARSLIYEGDNNG-NTP---LHV--- 288
              +    E   +LLK                NP   S+I E   +G  T     HV   
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 289 ---------LAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVT-DVL-IYGSRELTLSNVN 337
                    L  + P E+   +  +D      +V   +  +   +L +     +    + 
Sbjct: 354 KLTTIIESSLNVLEPAEY---RKMFDR----LSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 338 FQEEVRNLS---KDNGRGQY 354
              ++   S   K       
Sbjct: 407 VVNKLHKYSLVEKQPKESTI 426

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 78  KGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
              TPL  A          FL++  A +         ++     LH A   G+  +  + 
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQ------ADSAGRGPLHHATILGHTGLACLF 287

Query: 137 TKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
            K+  D   + +  G+  L +A E   +++V  LL        E   G+
Sbjct: 288 LKRGAD-LGARDSEGRDPLTIAMETANADIV-TLLRLAKMREAEAAQGQ 334

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 74  QVNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQV 132
           Q ++ G  PLH A   GH+ +    ++R A L A       ++E    L  A+   N  +
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGA------RDSEGRDPLTIAMETANADI 316

Query: 133 VKIL 136
           V +L
Sbjct: 317 VTLL 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	364
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.72
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.67

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3e-51  Score=374.33  Aligned_cols=302  Identities=25%  Similarity=0.266  Sum_probs=170.7

Q ss_pred             CCChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHH
Q 046373            5 SIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLH   84 (364)
Q Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~   84 (364)
                      ...++||.|+..|++++|++|++.+ .+....+..|.||||+|  +..|+.+++++|++.    +.+++..+..|.||||
T Consensus        13 ~g~t~L~~Aa~~g~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~   85 (437)
T 1n11_A           13 SGLTPLHVASFMGHLPIVKNLLQRG-ASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLH   85 (437)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTT-CCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHhC----CCCCCCCCCCCCCHHH
Confidence            3457888888888888888888876 55556666788888888  888888888888876    6777777788888888


Q ss_pred             HHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCH
Q 046373           85 LAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYS  164 (364)
Q Consensus        85 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~  164 (364)
                      +|+..|+.++|++|++++++     ++..+..|.||||+|+..|+.+++++|++.+.+.. ..+..|.||||+|+..|+.
T Consensus        86 ~A~~~g~~~~v~~Ll~~ga~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~  159 (437)
T 1n11_A           86 CAARIGHTNMVKLLLENNAN-----PNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKV  159 (437)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC-----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHHhCCCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHHHHHcCCH
Confidence            88888888888888887765     34455555555555555555555555555554433 3334445555555555555


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCChHHHHHHh---------------------------------hhhhcchhhhhh-----
Q 046373          165 EMVIELLENCTSVSHEGPNGKTALHAAAMH---------------------------------FYFENDQTAADI-----  206 (364)
Q Consensus       165 ~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~---------------------------------~~~~~~~~~~~~-----  206 (364)
                      +++++|++.|++++..+..|.||||+|+..                                 ..++....+...     
T Consensus       160 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  239 (437)
T 1n11_A          160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN  239 (437)
T ss_dssp             HHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            555555555554444444444444444443                                 111111111110     


Q ss_pred             hccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHH
Q 046373          207 ADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPL  286 (364)
Q Consensus       207 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L  286 (364)
                      .....|.||||.|+..|+.+++++|++++++ .+..+..|+||||+|+..|+.+++++|+++   +++++.+|..|.|||
T Consensus       240 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L  315 (437)
T 1n11_A          240 AESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH---GVMVDATTRMGYTPL  315 (437)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH---TCCTTCCCSSCCCHH
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CccCCCCCCCCCCHH
Confidence            1112344555555555555555555555444 234444444444444444444444444444   444555555555555


Q ss_pred             HHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhh
Q 046373          287 HVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLI  325 (364)
Q Consensus       287 ~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~  325 (364)
                      |+|+..|+  ...+.+|+++|++++.+|..|+||||+|+
T Consensus       316 ~~A~~~g~--~~~v~~Ll~~gad~n~~~~~g~t~L~~A~  352 (437)
T 1n11_A          316 HVASHYGN--IKLVKFLLQHQADVNAKTKLGYSPLHQAA  352 (437)
T ss_dssp             HHHHHSSC--SHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHcCc--HHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence            55555555  33444444455555555555555555553

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.7e-51  Score=373.05  Aligned_cols=276  Identities=23%  Similarity=0.218  Sum_probs=199.4

Q ss_pred             HHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhh
Q 046373           31 IESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMM  110 (364)
Q Consensus        31 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  110 (364)
                      .+....+..|.||||+|  +..|+.+++++|++.    +.+++..+..|.||||+|+..|+.+++++|++++++     +
T Consensus         5 ~~~~~~~~~g~t~L~~A--a~~g~~~~v~~Ll~~----g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----~   73 (437)
T 1n11_A            5 ISGGGGGESGLTPLHVA--SFMGHLPIVKNLLQR----GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-----V   73 (437)
T ss_dssp             ----------CCHHHHH--HHHTCHHHHHHHHHT----TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-----S
T ss_pred             CCccccCCCCCCHHHHH--HHCCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-----C
Confidence            44556677999999999  999999999999986    788899999999999999999999999999999976     7


Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHH
Q 046373          111 RMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHA  190 (364)
Q Consensus       111 ~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~  190 (364)
                      +..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++.+++.+..+..|.||||+
T Consensus        74 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~  152 (437)
T 1n11_A           74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN-LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV  152 (437)
T ss_dssp             SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHH
Confidence            8889999999999999999999999999999866 678889999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhcchhhhhh-----hccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHH
Q 046373          191 AAMHFYFENDQTAADI-----ADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKIL  265 (364)
Q Consensus       191 a~~~~~~~~~~~~~~~-----~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~l  265 (364)
                      |+....++....+...     .....|.||||.|+..|+.+++++|++++.++ +..+..|.||||+|+..++.+++++|
T Consensus       153 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~L  231 (437)
T 1n11_A          153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSL  231 (437)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9988444433333221     11235667777777777777777777666653 44455555555555555555555555


Q ss_pred             HhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHh
Q 046373          266 LKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVL  324 (364)
Q Consensus       266 l~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a  324 (364)
                      ++.   +++++.++..|.||||+|+..|+  ...+.+|+++|++++..|..|+||||+|
T Consensus       232 l~~---g~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  285 (437)
T 1n11_A          232 LQY---GGSANAESVQGVTPLHLAAQEGH--AEMVALLLSKQANGNLGNKSGLTPLHLV  285 (437)
T ss_dssp             HHT---TCCTTCCCTTCCCHHHHHHHTTC--HHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred             HHc---CCCCCCCCCCCCCHHHHHHHCCC--HHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence            554   44455555555555555555554  3333333444444444444444444444

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2e-44  Score=310.23  Aligned_cols=264  Identities=19%  Similarity=0.153  Sum_probs=234.0

Q ss_pred             CChhHHHHHhcCChHHhhhccCChhHHHhhh-hccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHH
Q 046373            6 IYPNFFNAAAAGDAETFKRNTTSDEIESLLT-AQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLH   84 (364)
Q Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~   84 (364)
                      ..++|+.|++.|++++|++|++.+ .+.... +..|.||||+|  +..|+.+++++|++.    +.+++..+..|.||||
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~   77 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNA--VQMSREDIVELLLRH----GADPVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHH
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCcHHHHH--HHcCCHHHHHHHHHc----CCCCcccCCCCCCHHH
Confidence            357899999999999999999987 444433 66899999999  999999999999986    7888899999999999


Q ss_pred             HHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCC---------CcCCchHH
Q 046373           85 LAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSE---------NKYGKTSL  155 (364)
Q Consensus        85 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~---------~~~~~t~l  155 (364)
                      +|+..|+.+++++|++++++     ++..+..|.||||+|+..|+.+++++|+++++++....         +..|.|||
T Consensus        78 ~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L  152 (285)
T 1wdy_A           78 LAAIAGSVKLLKLFLSKGAD-----VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL  152 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-----TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC-----CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence            99999999999999999876     67889999999999999999999999999998876332         66799999


Q ss_pred             HHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCC----HHHHHH
Q 046373          156 YMAAEGRYSEMVIELLEN-CTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGH----ARTVET  230 (364)
Q Consensus       156 ~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~----~~~~~~  230 (364)
                      |+|+..|+.+++++|++. |++++..+..                            |.||||.|+..++    .+++++
T Consensus       153 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~----------------------------g~t~l~~a~~~~~~~~~~~i~~~  204 (285)
T 1wdy_A          153 MDAAEKGHVEVLKILLDEMGADVNACDNM----------------------------GRNALIHALLSSDDSDVEAITHL  204 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTSCCCTTCCCTT----------------------------SCCHHHHHHHCSCTTTHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhcCCCCCccCCC----------------------------CCCHHHHHHHccccchHHHHHHH
Confidence            999999999999999997 8888776654                            5566666666666    899999


Q ss_pred             HHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcc
Q 046373          231 ILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNY  310 (364)
Q Consensus       231 Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~  310 (364)
                      |+++|.+ ++.++..|+||||+|+..++.+++++|++.  .+++++.+|..|.||||+|++.++  ...+.+|+++|+++
T Consensus       205 Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~g~~~~~~~~~g~t~l~~A~~~~~--~~i~~~Ll~~Ga~~  279 (285)
T 1wdy_A          205 LLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVELKL--KKIAELLCKRGAST  279 (285)
T ss_dssp             HHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHS--SSCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHHSSCS
T ss_pred             HHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhc--cCCCccccCCCCCcHHHHHHHcCc--HHHHHHHHHcCCCC
Confidence            9999998 588899999999999999999999999983  289999999999999999999999  67778888999999


Q ss_pred             cccc
Q 046373          311 GAVN  314 (364)
Q Consensus       311 ~~~n  314 (364)
                      +.+|
T Consensus       280 ~~~d  283 (285)
T 1wdy_A          280 DCGD  283 (285)
T ss_dssp             CCSS
T ss_pred             Cccc
Confidence            8776

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.8e-44  Score=319.92  Aligned_cols=278  Identities=19%  Similarity=0.167  Sum_probs=241.0

Q ss_pred             HHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhh
Q 046373           31 IESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMM  110 (364)
Q Consensus        31 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  110 (364)
                      .+....+..+.++||.|  ++.|+.+.++.++.   ..+.+++..|..|.||||+|+..|+.+++++|++++++     +
T Consensus        15 ~~~~~~~~~~~~~L~~A--~~~g~~~~v~~ll~---~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~   84 (351)
T 3utm_A           15 AKAVLTGEYKKDELLEA--ARSGNEEKLMALLT---PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-----V   84 (351)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTCHHHHHHHCC---TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----T
T ss_pred             eeeeeeccccchhHHHH--HHcCCHHHHHHHHH---hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----C
Confidence            55556677889999999  99999988888866   45777888899999999999999999999999999876     6


Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHH
Q 046373          111 RMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHA  190 (364)
Q Consensus       111 ~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~  190 (364)
                      +..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.+|+++
T Consensus        85 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~  163 (351)
T 3utm_A           85 HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM  163 (351)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHH
Confidence            7888999999999999999999999999998866 677889999999999999999999999999999999999999988


Q ss_pred             HHHhhhhhcc--------------------------hhhhhhhccCCCchHHHHHHhc---CCHHHHHHHHhcCCccccc
Q 046373          191 AAMHFYFEND--------------------------QTAADIADKDRKMTALHLAAGQ---GHARTVETILFLDPKCYEL  241 (364)
Q Consensus       191 a~~~~~~~~~--------------------------~~~~~~~~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~  241 (364)
                      ++.....+..                          ...........+.||||.|+..   +..+++++|++++.+ ++.
T Consensus       164 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~  242 (351)
T 3utm_A          164 APTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNE  242 (351)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTC
T ss_pred             HhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCC
Confidence            7543111110                          0011122345788999999999   568999999999999 588


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchh
Q 046373          242 VDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVT  321 (364)
Q Consensus       242 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l  321 (364)
                      ++..|+||||+|+..|+.+++++|+++   |++++.+|..|.||||+|+..|+  ...+.+|+++|++++.+|..|+||+
T Consensus       243 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~n~~d~~g~t~L~~A~~~~~--~~~v~~Ll~~gad~~~~~~~g~tal  317 (351)
T 3utm_A          243 KNKDFMTPLHVAAERAHNDVMEVLHKH---GAKMNALDSLGQTALHRAALAGH--LQTCRLLLSYGSDPSIISLQGFTAA  317 (351)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTC--HHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCc--HHHHHHHHHcCCCCCCcCCCCCChh
Confidence            999999999999999999999999998   99999999999999999999999  7778888899999999999999999


Q ss_pred             HHhh
Q 046373          322 DVLI  325 (364)
Q Consensus       322 ~~a~  325 (364)
                      ++|.
T Consensus       318 ~~a~  321 (351)
T 3utm_A          318 QMGN  321 (351)
T ss_dssp             HHSC
T ss_pred             hhhh
Confidence            9994

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.1e-43  Score=313.14  Aligned_cols=282  Identities=19%  Similarity=0.138  Sum_probs=237.2

Q ss_pred             ChhHHHHHhcCChHHhhhccCChhHHHhhhh-ccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHH
Q 046373            7 YPNFFNAAAAGDAETFKRNTTSDEIESLLTA-QTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHL   85 (364)
Q Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~   85 (364)
                      .++|+.|++.|++++|++|++.| .+.+..+ ..|.||||+|  +..|+.+++++|+++    +++++..+..+.++++.
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~G-advn~~~~~~g~TpLh~A--~~~g~~~iv~~Ll~~----ga~~~~~~~~~~~~~~~   98 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNA--VQMSREDIVELLLRH----GADPVLRKKNGATPFIL   98 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCcCHHHHH--HHcCCHHHHHHHHHc----CCchhhhccCCCchhHH
Confidence            46899999999999999999988 7666444 4599999999  999999999999997    88899999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC---------CCCcCCchHHH
Q 046373           86 AAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPY---------SENKYGKTSLY  156 (364)
Q Consensus        86 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~---------~~~~~~~t~l~  156 (364)
                      ++..+...++..+++.+.+     ++..+..|.||||+|+..|+.+++++|+++|++++.         ..+..|.||||
T Consensus        99 ~~~~~~~~~~~~~~~~~~~-----~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~  173 (337)
T 4g8k_A           99 AAIAGSVKLLKLFLSKGAD-----VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  173 (337)
T ss_dssp             HHHHTCHHHHHHHHTTTCC-----TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred             HHhcccchhhHHhhhccch-----hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Confidence            9999999999999998866     788899999999999999999999999999887642         23446899999


Q ss_pred             HHHhcCCHHHHHHHHH-cCCCCCCCCCCCCChHHHHHHh-----------hhhhcchhhhhhhccCCCchHHHHHHhcCC
Q 046373          157 MAAEGRYSEMVIELLE-NCTSVSHEGPNGKTALHAAAMH-----------FYFENDQTAADIADKDRKMTALHLAAGQGH  224 (364)
Q Consensus       157 ~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~-----------~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~  224 (364)
                      +|+..|+.+++++|++ .|++++..+..|.|+++.++..           .+++.+...  ......|.||||.|+..|+
T Consensus       174 ~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~--n~~d~~g~t~L~~a~~~~~  251 (337)
T 4g8k_A          174 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV--NVRGERGKTPLILAVEKKH  251 (337)
T ss_dssp             HHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT--TCCCGGGCCHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHhhh
Confidence            9999999999999996 5999999999999999987754           222222111  1123468899999999999


Q ss_pred             HHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhc
Q 046373          225 ARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRY  304 (364)
Q Consensus       225 ~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~  304 (364)
                      .++++.|++.....++.+|..|+||||+|+..|+.+++++|+++   |+++|.     .+|||+|++.++  ..++.+|+
T Consensus       252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~---GAd~n~-----~~~L~~A~~~~~--~~iv~~Ll  321 (337)
T 4g8k_A          252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR---GASTDC-----GDLVMTARRNYD--HSLVKVLL  321 (337)
T ss_dssp             HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT---SCSSTT-----CCHHHHHHHTTC--HHHHHHHH
T ss_pred             hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCC-----CCHHHHHHHcCC--HHHHHHHH
Confidence            99999999864433688899999999999999999999999988   777754     469999999998  56677778


Q ss_pred             ccCCcccc
Q 046373          305 DAGGNYGA  312 (364)
Q Consensus       305 ~~~~~~~~  312 (364)
                      ++||+++.
T Consensus       322 ~~GA~~d~  329 (337)
T 4g8k_A          322 SHGAKEDF  329 (337)
T ss_dssp             HTTCCC--
T ss_pred             HCcCCCCC
Confidence            88988754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.2e-42  Score=295.14  Aligned_cols=255  Identities=18%  Similarity=0.149  Sum_probs=226.4

Q ss_pred             ccCCchHHHHHHHHHhcCCChHHHHHHHhcCCcccccc-CCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCC
Q 046373           38 QTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQV-NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNE  116 (364)
Q Consensus        38 ~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  116 (364)
                      .+|.|+||.|  ++.|+.+++++|++.    +.+++.. +..|.||||+|+..|+.+++++|++++++     ++..+..
T Consensus         3 ~~g~~~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~   71 (285)
T 1wdy_A            3 VEDNHLLIKA--VQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-----PVLRKKN   71 (285)
T ss_dssp             HHHHHHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTT
T ss_pred             cccchHHHHH--HHcCCHHHHHHHHHc----CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CcccCCC
Confidence            3688999999  999999999999985    5667766 78899999999999999999999999876     6788999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhh
Q 046373          117 KNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFY  196 (364)
Q Consensus       117 g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  196 (364)
                      |.||||+|+..|+.+++++|+++|+++. ..+..|.||||+|+..|+.+++++|++.|++++..+.....          
T Consensus        72 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~----------  140 (285)
T 1wdy_A           72 GATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED----------  140 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHH----------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHH----------
Confidence            9999999999999999999999999876 67888999999999999999999999999998766542210          


Q ss_pred             hhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhc-CCcccccccCCCCcHHHHHHHcCC----HHHHHHHHhCccc
Q 046373          197 FENDQTAADIADKDRKMTALHLAAGQGHARTVETILFL-DPKCYELVDHRGWNFLHYAMVSFK----LHELKILLKNPLA  271 (364)
Q Consensus       197 ~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~d~~g~t~l~~a~~~~~----~~~~~~ll~~~~~  271 (364)
                              .......+.||||.|+..|+.+++++|++. +.+ ++..|..|+||||+|+..++    .+++++|++.   
T Consensus       141 --------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~---  208 (285)
T 1wdy_A          141 --------QERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---  208 (285)
T ss_dssp             --------HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT---
T ss_pred             --------HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHHc---
Confidence                    111234788999999999999999999988 666 68889999999999999999    9999999998   


Q ss_pred             ccccccCCCCCCcHHHHHHhcCCcceeehhhhcc-cCCcccccccCCCchhHHhhhcc
Q 046373          272 RSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYD-AGGNYGAVNKQNVSVTDVLIYGS  328 (364)
Q Consensus       272 ~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~-~~~~~~~~n~~g~t~l~~a~~~~  328 (364)
                      +++++.+|..|.||||+|+..++  ...+.+|++ .|++++.+|..|+||||+|+..+
T Consensus       209 g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~  264 (285)
T 1wdy_A          209 GADVNVRGERGKTPLILAVEKKH--LGLVQRLLEQEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             TCCSSCCCTTSCCHHHHHHHTTC--HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCCCCcCCCCCcHHHHHHHcCC--HHHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence            89999999999999999999999  666777777 89999999999999999997654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.3e-42  Score=294.45  Aligned_cols=244  Identities=20%  Similarity=0.175  Sum_probs=193.0

Q ss_pred             cCCchHHHHHHHHHhcCCChHHHHHHHhc-------CCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhh
Q 046373           39 TKNTILHINIISQKRKNGSTKFIGEMLKK-------CPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMR  111 (364)
Q Consensus        39 ~g~t~L~~A~~~~~~~~~~~~~l~~~l~~-------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  111 (364)
                      .|.|+||+|  +..|+.+.+..++..-..       ....++..|..|+||||+|+..|+.+++++|++.+.+     ++
T Consensus        14 ~~~~~lH~A--a~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-----~~   86 (285)
T 3d9h_A           14 LVPRGSHMA--SMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-----VN   86 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-----SC
T ss_pred             HHHHHHHHH--hhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-----CC
Confidence            889999999  999997666665543111       1233567788999999999999999999999999865     77


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHH
Q 046373          112 MTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAA  191 (364)
Q Consensus       112 ~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a  191 (364)
                      ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++.|++++..           
T Consensus        87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-----------  154 (285)
T 3d9h_A           87 IITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-----------  154 (285)
T ss_dssp             EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-----------
T ss_pred             CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCC-----------
Confidence            889999999999999999999999999998866 77888999999999999999999999999886522           


Q ss_pred             HHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCccc
Q 046373          192 AMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLA  271 (364)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~  271 (364)
                                        ..|.||||.|+..|+.+++++|++++++ ++..|..|+||||+|+..++.+++++|++.   
T Consensus       155 ------------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---  212 (285)
T 3d9h_A          155 ------------------SDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLES---  212 (285)
T ss_dssp             ------------------CTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHT---
T ss_pred             ------------------CCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHC---
Confidence                              2478899999999999999999999998 578899999999999999999999999998   


Q ss_pred             ccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhhh
Q 046373          272 RSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIY  326 (364)
Q Consensus       272 ~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~  326 (364)
                      +++++. +..|.||||+|+..++  ...+.+|+++|++++.+|..|+||+|+|+.
T Consensus       213 ga~~~~-~~~g~t~L~~A~~~~~--~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~  264 (285)
T 3d9h_A          213 GADVNQ-GKGQDSPLHAVVRTAS--EELACLLMDFGADTQAKNAEGKRPVELVPP  264 (285)
T ss_dssp             TCCTTC-CBTTBCHHHHHHHTTC--HHHHHHHHHTTCCTTCCCTTSCCGGGGSCT
T ss_pred             CCCCCC-CCCCCCHHHHHHHcCC--HHHHHHHHHCCCCCCCcCCCCCCHHHHhcC
Confidence            888885 8889999999999999  666777778999999999999999999983

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.6e-42  Score=294.33  Aligned_cols=256  Identities=15%  Similarity=0.099  Sum_probs=199.7

Q ss_pred             CCChhHHHHHhcCChHHhhhccCChhH----------HHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccc
Q 046373            5 SIYPNFFNAAAAGDAETFKRNTTSDEI----------ESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQ   74 (364)
Q Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~----------~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~   74 (364)
                      ...++||+|+..|+.+.+..++..++.          .....+..|.||||+|  +..|+.+++++|++.    +.+++.
T Consensus        14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~A--a~~g~~~~v~~Ll~~----g~~~~~   87 (285)
T 3d9h_A           14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEA--AIHGHQLSLRNLISQ----GWAVNI   87 (285)
T ss_dssp             ----------------------------CCSEECCCCTTCSSSCCSCCHHHHH--HHTTCHHHHHHHHHT----TCCSCE
T ss_pred             HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHH--HHcCCHHHHHHHHHC----CCCCCC
Confidence            356899999999998777775443211          1235677999999999  999999999999985    788999


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchH
Q 046373           75 VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTS  154 (364)
Q Consensus        75 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~  154 (364)
                      .|.+|.||||+|+..|+.+++++|++++++     ++..+..|.||||+|+..|+.+++++|+++++++.  .+..|.||
T Consensus        88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~  160 (285)
T 3d9h_A           88 ITADHVSPLHEACLGGHLSCVKILLKHGAQ-----VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASP  160 (285)
T ss_dssp             ECTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCH
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCH
Confidence            999999999999999999999999999866     78889999999999999999999999999999865  34459999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhc
Q 046373          155 LYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFL  234 (364)
Q Consensus       155 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~  234 (364)
                      ||+|+..|+.+++++|++.|++++..+.                            .|.||||.|+..|+.+++++|+++
T Consensus       161 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~----------------------------~g~t~L~~A~~~~~~~~v~~Ll~~  212 (285)
T 3d9h_A          161 IHEAARRGHVECVNSLIAYGGNIDHKIS----------------------------HLGTPLYLACENQQRACVKKLLES  212 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCBT----------------------------TTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCC----------------------------CCCCHHHHHHHcCcHHHHHHHHHC
Confidence            9999999999999999999999876554                            577888889999999999999999


Q ss_pred             CCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhccc-CCcc
Q 046373          235 DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDA-GGNY  310 (364)
Q Consensus       235 ~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~-~~~~  310 (364)
                      ++++ + .+..|+||||+|+..++.+++++|+++   |++++.+|..|.||||+|+..    ...+.+|++. |+++
T Consensus       213 ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l~~A~~~----~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          213 GADV-N-QGKGQDSPLHAVVRTASEELACLLMDF---GADTQAKNAEGKRPVELVPPE----SPLAQLFLEREGASL  280 (285)
T ss_dssp             TCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGSCTT----SHHHHHHHHHC----
T ss_pred             CCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHhcCc----cHHHHHHHHhhccCC
Confidence            9984 5 488999999999999999999999998   999999999999999999943    2344444454 6665

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-41  Score=304.19  Aligned_cols=268  Identities=16%  Similarity=0.144  Sum_probs=221.8

Q ss_pred             CCChhHHHHHhcCChHHhhhccCChhHHHhhhh-ccCCchHHHHHHHHHhcCCChHHHHHH----HhcCCccccccCCCC
Q 046373            5 SIYPNFFNAAAAGDAETFKRNTTSDEIESLLTA-QTKNTILHINIISQKRKNGSTKFIGEM----LKKCPSLLLQVNAKG   79 (364)
Q Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~~~l~~~----l~~~~~~~~~~~~~g   79 (364)
                      ...++||.|+..| .+++++|+..+ +  ...+ ..|.||||+|  +..|+.+++++|+..    +...+.+++..|..|
T Consensus        93 ~g~t~L~~Aa~~~-~~~~~~L~~~~-~--n~~d~~~g~t~Lh~A--a~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g  166 (373)
T 2fo1_E           93 ESPIKLHTEAAGS-YAITEPITRES-V--NIIDPRHNRTVLHWI--ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE  166 (373)
T ss_dssp             -CCCHHHHHHHSS-SCCCSCCSTTT-T--TTCCCSSCCCHHHHH--HCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTS
T ss_pred             CCccHHHHHhcCC-chHHHHhcccc-c--cccCCcCCCCHHHHH--HHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCC
Confidence            3467899999854 58888887654 3  3344 5899999999  999999999988742    224578889999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcC---CCCCCCCCcCCchHHH
Q 046373           80 DTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQD---PDYPYSENKYGKTSLY  156 (364)
Q Consensus        80 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~---~~~~~~~~~~~~t~l~  156 (364)
                      .||||+|+..|+.++|++|+++|++     ++..+..|.||||+|+..|+.+++++|++.+   .+++ ..+..|.||||
T Consensus       167 ~TpL~~A~~~g~~~iv~~Ll~~ga~-----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~d~~g~t~L~  240 (373)
T 2fo1_E          167 NTPLMLAVLARRRRLVAYLMKAGAD-----PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-ELDRNGMTALM  240 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-----SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS-CCCTTSCCHHH
T ss_pred             CCHHHHHHHcChHHHHHHHHHCCCC-----CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh-hcCCCCCCHHH
Confidence            9999999999999999999999876     6778889999999999999999999999876   4544 67788999999


Q ss_pred             HHHhcC---CHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHh
Q 046373          157 MAAEGR---YSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILF  233 (364)
Q Consensus       157 ~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~  233 (364)
                      +|+..+   +.+++++|++.|++++..+..                    .....+..|.||||.|+..|+.+++++|++
T Consensus       241 ~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~--------------------~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  300 (373)
T 2fo1_E          241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAA--------------------RKDSEKYKGRTALHYAAQVSNMPIVKYLVG  300 (373)
T ss_dssp             HHHHSCSTTHHHHHHHHHHHTCCSSCCSGG--------------------GTSSSSCCCCCTHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHhCCcchHHHHHHHHHCCCCccccccc--------------------ccCcccccCCCHHHHHHHhCCHHHHHHHHH
Confidence            999887   899999999999888753320                    011133478999999999999999999998


Q ss_pred             cCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCc
Q 046373          234 LDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGN  309 (364)
Q Consensus       234 ~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~  309 (364)
                      ++...++..|..|+||||+|+..|+.+++++|+++   |++++.+|..|.||||+|+..|+  ..++.+|++++++
T Consensus       301 ~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~---gad~~~~d~~g~t~l~~A~~~g~--~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          301 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNH--HNIVDIFDRCRPE  371 (373)
T ss_dssp             HSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTC--HHHHHHHHTTC--
T ss_pred             hcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccCCCCCCCCHHHHHHHcCC--HHHHHHHHhcCcc
Confidence            87434788999999999999999999999999998   99999999999999999999999  6667777777765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.1e-41  Score=297.68  Aligned_cols=296  Identities=20%  Similarity=0.147  Sum_probs=236.1

Q ss_pred             ChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHH
Q 046373            7 YPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLA   86 (364)
Q Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A   86 (364)
                      .++|+.|++.|+.+.|++++...+.+....+..|.||||+|  +..|+.+++++|++.    +.+++..|..|.||||+|
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A   98 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA--AGYNRVRIVQLLLQH----GADVHAKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHH
T ss_pred             chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCCCccCCCCCcHHHHH
Confidence            46899999999999999999986576777788999999999  999999999999986    888999999999999999


Q ss_pred             HHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHH--------
Q 046373           87 AKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMA--------  158 (364)
Q Consensus        87 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A--------  158 (364)
                      +..|+.+++++|++++++     ++..+..|.||||+|+..|+.+++++|+++|++.. ..+..|.||+++|        
T Consensus        99 ~~~g~~~iv~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~~a~~~~~~~~  172 (351)
T 3utm_A           99 CSYGHYEVTELLLKHGAC-----VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRER  172 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCSSHHHHHH
T ss_pred             HHCCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchHHHhhhhhHHH
Confidence            999999999999999876     78889999999999999999999999999999865 6677788887664        


Q ss_pred             -------------HhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHh---hhhhcchhhhh-----hhccCCCchHHH
Q 046373          159 -------------AEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH---FYFENDQTAAD-----IADKDRKMTALH  217 (364)
Q Consensus       159 -------------~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~~~~-----~~~~~~~~t~L~  217 (364)
                                   +..+..+.++.++..+......+..|.||||+|+..   ...+....+..     ...+..|.||||
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  252 (351)
T 3utm_A          173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLH  252 (351)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             HHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHH
Confidence                         456667777777777666666778899999999876   21222211111     123357899999


Q ss_pred             HHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcce
Q 046373          218 LAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEF  297 (364)
Q Consensus       218 ~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~  297 (364)
                      +|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++   |++++.+|..|.||+|+|    .  .
T Consensus       253 ~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~~~~g~tal~~a----~--~  322 (351)
T 3utm_A          253 VAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSY---GSDPSIISLQGFTAAQMG----N--E  322 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHS----C--H
T ss_pred             HHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCCCcCCCCCChhhhh----h--H
Confidence            99999999999999999999 588999999999999999999999999998   999999999999999998    3  3


Q ss_pred             eehhhhcccCCcccccccCCCchhHHhhhc
Q 046373          298 FKIKVRYDAGGNYGAVNKQNVSVTDVLIYG  327 (364)
Q Consensus       298 ~~~~ll~~~~~~~~~~n~~g~t~l~~a~~~  327 (364)
                      ....+|.+.+..   ....+.+++..|+..
T Consensus       323 ~~~~~l~~~~~~---~~~~~~~~l~~A~~~  349 (351)
T 3utm_A          323 AVQQILSESTPM---RTSDVDYRLLEASKA  349 (351)
T ss_dssp             HHHHHHHHC---------------------
T ss_pred             HHHHHHHhcccc---ccCcceeehhhhhcc
Confidence            344555555543   245667777777543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2e-40  Score=292.40  Aligned_cols=272  Identities=19%  Similarity=0.129  Sum_probs=234.5

Q ss_pred             hhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCC-CCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCC
Q 046373           36 TAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNA-KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTN  114 (364)
Q Consensus        36 ~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  114 (364)
                      ...+|.|+||.|  ++.|+.+++++|++.    +++++..+. .|+||||+|+..|+.++|++|+++|+.     ++..+
T Consensus        21 ~~~~~~t~L~~A--v~~g~~~~V~~LL~~----Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-----~~~~~   89 (337)
T 4g8k_A           21 AAVEDNHLLIKA--VQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-----PVLRK   89 (337)
T ss_dssp             CHHHHHHHHHHH--HHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCC
T ss_pred             CCCCCChHHHHH--HHcCCHHHHHHHHHC----CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-----hhhhc
Confidence            344678999999  999999999999997    888888775 489999999999999999999999976     68889


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCC----------CCCC
Q 046373          115 NEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHE----------GPNG  184 (364)
Q Consensus       115 ~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~----------~~~~  184 (364)
                      ..+.++++.++..+..+++..++..+.+++ ..+..|.||+++|+..|+.+++++|++.|++++..          +..|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g  168 (337)
T 4g8k_A           90 KNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG  168 (337)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCS
T ss_pred             cCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCC
Confidence            999999999999999999999999999876 78889999999999999999999999999988764          4468


Q ss_pred             CChHHHHHHhhhhhcchhhhhh------hccCCCchHHHHHHhcCC----HHHHHHHHhcCCcccccccCCCCcHHHHHH
Q 046373          185 KTALHAAAMHFYFENDQTAADI------ADKDRKMTALHLAAGQGH----ARTVETILFLDPKCYELVDHRGWNFLHYAM  254 (364)
Q Consensus       185 ~~~l~~a~~~~~~~~~~~~~~~------~~~~~~~t~L~~a~~~~~----~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~  254 (364)
                      .||||+|+.....+....+...      ..+..|.|+++.++..+.    .+++++|+++|++ ++.+|..|+||||+|+
T Consensus       169 ~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~  247 (337)
T 4g8k_A          169 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAV  247 (337)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHH
T ss_pred             CcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHH
Confidence            8999999998555554444321      233578899988775433    4688999999999 5889999999999999


Q ss_pred             HcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhhhccc
Q 046373          255 VSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSR  329 (364)
Q Consensus       255 ~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~~~~  329 (364)
                      ..++.++++.|++.  .+++++.+|..|.||||+|++.|+  ..++.+|+++|++++.     .+||++|+.++.
T Consensus       248 ~~~~~~~v~~Ll~~--~~~~vn~~d~~G~TpL~~A~~~g~--~~iv~~Ll~~GAd~n~-----~~~L~~A~~~~~  313 (337)
T 4g8k_A          248 EKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVELKL--KKIAELLCKRGASTDC-----GDLVMTARRNYD  313 (337)
T ss_dssp             HTTCHHHHHHHHTS--TTCCTTCBCTTSCBHHHHHHHTTC--HHHHHHHHTTSCSSTT-----CCHHHHHHHTTC
T ss_pred             HhhhhHHHHHHHHh--cCCcccCcCCCCCCHHHHHHHcCC--HHHHHHHHHCCCCCCC-----CCHHHHHHHcCC
Confidence            99999999999985  378999999999999999999999  6677788899998754     569999976553

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.5e-41  Score=282.33  Aligned_cols=226  Identities=21%  Similarity=0.176  Sum_probs=159.0

Q ss_pred             HhhhhccCCchHHHHHHHHHh-------------cCCChHHHHHHHhcCCccc-cccCCCCCcHHHHHHHcCCHHHHHHH
Q 046373           33 SLLTAQTKNTILHINIISQKR-------------KNGSTKFIGEMLKKCPSLL-LQVNAKGDTPLHLAAKFGHSNIVSFL   98 (364)
Q Consensus        33 ~~~~~~~g~t~L~~A~~~~~~-------------~~~~~~~l~~~l~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L   98 (364)
                      .+.++.+|.||||+|  +..|             +.+++++|++.    +.++ +..|..|.||||+|+..|+.+++++|
T Consensus         3 vn~~d~~g~tpL~~A--~~~g~~~~~~~~~~~~~~~~~v~~Ll~~----g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~L   76 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIA--SCSGGGLETGNSEEEEDAPAVISDFIYQ----GASLHNQTDRTGETALHLAARYSRSDAAKRL   76 (253)
T ss_dssp             -------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCCCcHHHHH--HhccccccccchhhcCCChHHHHHHHHc----cCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Confidence            345667899999999  8876             78888888775    4444 44578889999999999999999999


Q ss_pred             HHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCC
Q 046373           99 IERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS  178 (364)
Q Consensus        99 l~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~  178 (364)
                      ++++++     ++..+..|.||||+|+..|+.+++++|++.++......+..|.||||+|+..++.+++++|++.|++++
T Consensus        77 l~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  151 (253)
T 1yyh_A           77 LEASAD-----ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN  151 (253)
T ss_dssp             HHTTCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT
T ss_pred             HHcCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC
Confidence            988865     677788889999999999999999999988874445777788899999999999999999999888877


Q ss_pred             CCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCC
Q 046373          179 HEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFK  258 (364)
Q Consensus       179 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~  258 (364)
                      ..+.                            .|.||||+|+..|+.+++++|+++|++ ++..|..|+||||+|+..|+
T Consensus       152 ~~d~----------------------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~  202 (253)
T 1yyh_A          152 AVDD----------------------------LGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGS  202 (253)
T ss_dssp             CBCT----------------------------TSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC
T ss_pred             CcCC----------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCC
Confidence            5544                            467777788888888999999988888 57788889999999999999


Q ss_pred             HHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehh
Q 046373          259 LHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIK  301 (364)
Q Consensus       259 ~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~  301 (364)
                      .+++++|+++   |++++.+|..|.||||+|++.|+.++..++
T Consensus       203 ~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l  242 (253)
T 1yyh_A          203 YETAKVLLDH---FANRDITDHMDRLPRDIAQERMHHDIVRLL  242 (253)
T ss_dssp             HHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHc---CCCccccccCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999988   888888888899999999999984444433

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-41  Score=303.87  Aligned_cols=246  Identities=20%  Similarity=0.189  Sum_probs=193.7

Q ss_pred             hhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccC-CCCCcHHHHHHHcCCHHHHHHHH--------HHhhHHH
Q 046373           36 TAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVN-AKGDTPLHLAAKFGHSNIVSFLI--------ERAKLAA  106 (364)
Q Consensus        36 ~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll--------~~~~~~~  106 (364)
                      .+..|.||||+|  +..+ .+++++|..      ..++..| ..|.||||+|+..|+.+++++|+        +.|++  
T Consensus        90 ~~~~g~t~L~~A--a~~~-~~~~~~L~~------~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~--  158 (373)
T 2fo1_E           90 PEPESPIKLHTE--AAGS-YAITEPITR------ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD--  158 (373)
T ss_dssp             ----CCCHHHHH--HHSS-SCCCSCCST------TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC--
T ss_pred             CCCCCccHHHHH--hcCC-chHHHHhcc------ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC--
Confidence            345778888888  7744 467666643      3456666 67888888888888887777766        44433  


Q ss_pred             hHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcC---CCCCCCCCC
Q 046373          107 WQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENC---TSVSHEGPN  183 (364)
Q Consensus       107 ~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~  183 (364)
                         ++..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++.+   ++++..+. 
T Consensus       159 ---vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~-  233 (373)
T 2fo1_E          159 ---VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-  233 (373)
T ss_dssp             ---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT-
T ss_pred             ---CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC-
Confidence               67777888888888888888888888888887765 56677888888888888888888888776   55554444 


Q ss_pred             CCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcC---CHHHHHHHHhcCCccccc--------ccCCCCcHHHH
Q 046373          184 GKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQG---HARTVETILFLDPKCYEL--------VDHRGWNFLHY  252 (364)
Q Consensus       184 ~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~---~~~~~~~Ll~~~~~~~~~--------~d~~g~t~l~~  252 (364)
                                                 .|.||||+|+..+   +.+++++|+++++++ +.        .|..|+||||+
T Consensus       234 ---------------------------~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~d~~g~t~Lh~  285 (373)
T 2fo1_E          234 ---------------------------NGMTALMIVAHNEGRDQVASAKLLVEKGAKV-DYDGAARKDSEKYKGRTALHY  285 (373)
T ss_dssp             ---------------------------TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS-SCCSGGGTSSSSCCCCCTHHH
T ss_pred             ---------------------------CCCCHHHHHHHhCCcchHHHHHHHHHCCCCc-ccccccccCcccccCCCHHHH
Confidence                                       5667777777776   899999999999884 43        56789999999


Q ss_pred             HHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhhhccc
Q 046373          253 AMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSR  329 (364)
Q Consensus       253 a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~~~~  329 (364)
                      |+..|+.+++++|++.  .+++++.+|..|.||||+|+..|+  ..++.+|+++|++++.+|..|+|||++|+..+.
T Consensus       286 A~~~g~~~~v~~Ll~~--~~~~~n~~d~~g~TpL~~A~~~g~--~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~  358 (373)
T 2fo1_E          286 AAQVSNMPIVKYLVGE--KGSNKDKQDEDGKTPIMLAAQEGR--IEVVMYLIQQGASVEAVDATDHTARQLAQANNH  358 (373)
T ss_dssp             HHSSCCHHHHHHHHHH--SCCCTTCCCTTCCCHHHHHHHHTC--HHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHh--cCCCccCcCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC
Confidence            9999999999999986  248999999999999999999999  677778889999999999999999999976554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.7e-41  Score=302.39  Aligned_cols=252  Identities=16%  Similarity=0.119  Sum_probs=209.1

Q ss_pred             HHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhh
Q 046373           31 IESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMM  110 (364)
Q Consensus        31 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  110 (364)
                      ++....|.+|.||||+|  +..|+.+++++|++.    +.+++..|..|.||||+|+..|+.++|++|+++++.      
T Consensus        11 ~~~~~~d~~g~t~L~~A--a~~g~~~~v~~Ll~~----g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------   78 (364)
T 3ljn_A           11 LNRIKSDDENMEKIHVA--ARKGQTDEVRRLIET----GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV------   78 (364)
T ss_dssp             -----CCHHHHHHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC------
T ss_pred             CCccccCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC------
Confidence            33445667899999999  999999999999986    788899999999999999999999999999999863      


Q ss_pred             hcCCCCCCcHHHHHHHcCCHHHHHHHHhc----CCCCCC----------------CCCcCCchHHHHHHhcC--CHHHHH
Q 046373          111 RMTNNEKNTALHEAVCHGNVQVVKILTKQ----DPDYPY----------------SENKYGKTSLYMAAEGR--YSEMVI  168 (364)
Q Consensus       111 ~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~----~~~~~~----------------~~~~~~~t~l~~A~~~~--~~~~v~  168 (364)
                       ..+..|.||||+|+..|+.+++++|++.    +.+...                ..+..|.||||+|+..|  +.++++
T Consensus        79 -~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~  157 (364)
T 3ljn_A           79 -HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIK  157 (364)
T ss_dssp             -CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHH
T ss_pred             -ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHH
Confidence             3345799999999999999999999998    555331                16667999999999999  999999


Q ss_pred             HHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcc----cccccC
Q 046373          169 ELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKC----YELVDH  244 (364)
Q Consensus       169 ~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~----~~~~d~  244 (364)
                      +|++.|++++..+.                            .|.||||+|+..|+.+++++|++++++.    ++..|.
T Consensus       158 ~Ll~~ga~~~~~d~----------------------------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~  209 (364)
T 3ljn_A          158 ILVQLGASPTAKDK----------------------------ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK  209 (364)
T ss_dssp             HHHHHTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT
T ss_pred             HHHHcCCCCcccCC----------------------------CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCC
Confidence            99999999876655                            4677778888889999999999988773    477888


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccc------------
Q 046373          245 RGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGA------------  312 (364)
Q Consensus       245 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~------------  312 (364)
                      .|+||||+|+..|+.+++++|+++   |++++.+|..|.||||+|++.|+  ..++.+|+++|++++.            
T Consensus       210 ~g~t~L~~A~~~g~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  284 (364)
T 3ljn_A          210 QGNSHLHWAILINWEDVAMRFVEM---GIDVNMEDNEHTVPLYLSVRAAM--VLLTKELLQKTDVFLIQACPYHNGTTVL  284 (364)
T ss_dssp             TCCCTTHHHHTTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHHHHTCC--HHHHHHHHHHSCHHHHHTCTTBSSSSBC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHhCh--HHHHHHHHHcCCchhhhcCcccCccccc
Confidence            999999999999999999999998   89999999999999999999999  6666666677766433            


Q ss_pred             cccCCCchhHHhhhcc
Q 046373          313 VNKQNVSVTDVLIYGS  328 (364)
Q Consensus       313 ~n~~g~t~l~~a~~~~  328 (364)
                      .+..|++|++.|+...
T Consensus       285 ~~~~~~~~l~~aa~~~  300 (364)
T 3ljn_A          285 PDRVVWLDFVPAAADP  300 (364)
T ss_dssp             GGGCCCCTTSCSSCCH
T ss_pred             ccccccccchhhhhcc
Confidence            5667888888885444

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.5e-40  Score=279.19  Aligned_cols=230  Identities=20%  Similarity=0.150  Sum_probs=170.0

Q ss_pred             hhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCC
Q 046373           35 LTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTN  114 (364)
Q Consensus        35 ~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  114 (364)
                      ..|.+|.||||+|  ++.|+.+++++|++.+...+.+++..|..|.||||+|+..|+.+++++|++.+++     ++..+
T Consensus         4 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~   76 (241)
T 1k1a_A            4 RADEDGDTPLHIA--VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-----PMALD   76 (241)
T ss_dssp             ---CTTCCHHHHH--HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCC
T ss_pred             ccCCCCCcHHHHH--HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-----ccccC
Confidence            3456788888888  8888888888887766666777777788888888888888888888888887765     56667


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCC----CCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHH
Q 046373          115 NEKNTALHEAVCHGNVQVVKILTKQDP----DYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHA  190 (364)
Q Consensus       115 ~~g~t~l~~a~~~~~~e~v~~Ll~~~~----~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~  190 (364)
                      ..|.||||+|+..|+.+++++|++.++    ++. ..+..|.||||+|+..++.+++++|++.|++++..+.        
T Consensus        77 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~--------  147 (241)
T 1k1a_A           77 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI--------  147 (241)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc--------
Confidence            778888888888888888888888776    333 5566778888888888888888888888777654331        


Q ss_pred             HHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcc
Q 046373          191 AAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPL  270 (364)
Q Consensus       191 a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~  270 (364)
                                         ..|.||||.|+..|+.+++++|+++|++ ++..|..|+||||+|+..++.+++++|+++  
T Consensus       148 -------------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--  205 (241)
T 1k1a_A          148 -------------------KSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRS--  205 (241)
T ss_dssp             -------------------TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT--
T ss_pred             -------------------cCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhc--
Confidence                               2466777777777888888888888777 466777788888888888888888888876  


Q ss_pred             cccccccCCCCCCcHHHHHHhcCCcceeehhhhcc
Q 046373          271 ARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYD  305 (364)
Q Consensus       271 ~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~  305 (364)
                       |++++.+|..|.||||+|+..++  ...+..|.+
T Consensus       206 -ga~~~~~~~~g~tpl~~A~~~~~--~~i~~~l~~  237 (241)
T 1k1a_A          206 -GADSSLKNCHNDTPLMVARSRRV--IDILRGKAT  237 (241)
T ss_dssp             -TCCTTCCCTTSCCTTTTCSSHHH--HHHHTC---
T ss_pred             -CCCCCCcCCCCCCHHHHHHhcCc--HHHHhhhcc
Confidence             77788788888888888887777  444444433

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=4.1e-40  Score=283.00  Aligned_cols=248  Identities=21%  Similarity=0.139  Sum_probs=178.0

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCC
Q 046373           72 LLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYG  151 (364)
Q Consensus        72 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~  151 (364)
                      ++..|..|.||||+|+..|+.++|++|++.++..  ..++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g   78 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH--EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGG   78 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS--GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTS
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc--ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCC
Confidence            3567788888888888888888888888887642  1256677888888888888888888888888888865 667778


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCCCCC-------------CCCCChHHHHHHhhhhh------cchhhhhhhccCCC
Q 046373          152 KTSLYMAAEGRYSEMVIELLENCTSVSHEG-------------PNGKTALHAAAMHFYFE------NDQTAADIADKDRK  212 (364)
Q Consensus       152 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~-------------~~~~~~l~~a~~~~~~~------~~~~~~~~~~~~~~  212 (364)
                      .||||+|+..|+.+++++|++.|++.....             ..+.++++.+.......      .............|
T Consensus        79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (282)
T 1oy3_D           79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (282)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence            888888888888888888888876543221             22334444433321000      00011112234579


Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCcccccccC-CCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHh
Q 046373          213 MTALHLAAGQGHARTVETILFLDPKCYELVDH-RGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA  291 (364)
Q Consensus       213 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~-~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~  291 (364)
                      .||||.|+..|+.+++++|+++|+++ +..+. .|+||||+|+..|+.+++++|+++   |++++.+|..|.||||+|+.
T Consensus       159 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~  234 (282)
T 1oy3_D          159 HTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGSALL  234 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHT
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHc---CCCCcccccCCCCHHHHHHH
Confidence            99999999999999999999999994 66664 599999999999999999999998   99999999999999999999


Q ss_pred             cCCcceeehhhhcccCCcccccccCCCchhHHhhhcc
Q 046373          292 IRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGS  328 (364)
Q Consensus       292 ~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~~~  328 (364)
                      .++  ..++.+|+++|++++.+|..|.||+++|....
T Consensus       235 ~~~--~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          235 RPN--PILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             SSC--HHHHHHHHHTTCCCCCCC--------------
T ss_pred             cCC--cHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            999  77778888999999999999999999996544

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.9e-40  Score=279.37  Aligned_cols=221  Identities=22%  Similarity=0.187  Sum_probs=167.0

Q ss_pred             cccccCCCCCcHHHHHHHcC-------------CHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHH
Q 046373           71 LLLQVNAKGDTPLHLAAKFG-------------HSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT  137 (364)
Q Consensus        71 ~~~~~~~~g~t~L~~A~~~~-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll  137 (364)
                      +++.+|.+|+||||+|+..|             +.+++++|++.++..    ....+..|.||||+|+..|+.+++++|+
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   77 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL----HNQTDRTGETALHLAARYSRSDAAKRLL   77 (253)
T ss_dssp             ------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc----ccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            46778999999999999987             899999999999763    3456889999999999999999999999


Q ss_pred             hcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHH
Q 046373          138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCT-SVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTAL  216 (364)
Q Consensus       138 ~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L  216 (364)
                      ++|++++ ..+..|.||||+|+..|+.+++++|++.+. +++..+.                            .|.|||
T Consensus        78 ~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----------------------------~g~t~L  128 (253)
T 1yyh_A           78 EASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH----------------------------DGTTPL  128 (253)
T ss_dssp             HTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT----------------------------TCCCHH
T ss_pred             HcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC----------------------------CCCcHH
Confidence            9999976 678889999999999999999999999986 6655444                            577788


Q ss_pred             HHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcc
Q 046373          217 HLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKE  296 (364)
Q Consensus       217 ~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~  296 (364)
                      |.|+..|+.+++++|++++++ ++..|..|+||||+|+..|+.+++++|++.   |++++.+|..|.||||+|+..|+  
T Consensus       129 ~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpL~~A~~~~~--  202 (253)
T 1yyh_A          129 ILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKN---GANKDMQNNREETPLFLAAREGS--  202 (253)
T ss_dssp             HHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTC--
T ss_pred             HHHHHcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCC--
Confidence            888888999999999999998 588999999999999999999999999998   99999999999999999999999  


Q ss_pred             eeehhhhcccCCcccccccCCCchhHHhhhcccc
Q 046373          297 FFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSRE  330 (364)
Q Consensus       297 ~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~~~~~  330 (364)
                      ..++.+|+++|++++.+|..|+||+++|+..+..
T Consensus       203 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~  236 (253)
T 1yyh_A          203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHH  236 (253)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHHcCCCccccccCCCCHHHHHHHcCCH
Confidence            6777888899999999999999999999655544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.9e-39  Score=271.78  Aligned_cols=220  Identities=22%  Similarity=0.241  Sum_probs=179.8

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcC
Q 046373           71 LLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKY  150 (364)
Q Consensus        71 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~  150 (364)
                      +++..|..|.||||+|+..|+.+++++|++++.+     ++..+..|.||||+|+..|+.+++++|+++|.++. ..+..
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~   76 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-----IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-PKDAE   76 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-CCCTT
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-----cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCC
Confidence            4566778888888888888888888888888765     67777888888888888888888888888888765 56777


Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHH
Q 046373          151 GKTSLYMAAEGRYSEMVIELLENC-TSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVE  229 (364)
Q Consensus       151 ~~t~l~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~  229 (364)
                      |.||||+|+..|+.+++++|++.| .+++..+.                            .|.||||.|+..|+.++++
T Consensus        77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~----------------------------~g~t~L~~A~~~~~~~~~~  128 (237)
T 3b7b_A           77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD----------------------------GGWTPMIWATEYKHVDLVK  128 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCC----------------------------CCCCHHHHHHHcCCHHHHH
Confidence            888888888888888888888887 56554433                            4667777788888888888


Q ss_pred             HHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCc
Q 046373          230 TILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGN  309 (364)
Q Consensus       230 ~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~  309 (364)
                      +|+++|++ ++..+..|.||||+|+..|+.+++++|++.   +++++.+|..|.||||+|++.++  ...+.+|+++|++
T Consensus       129 ~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~gad  202 (237)
T 3b7b_A          129 LLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAA---KCDLHAVNIHGDSPLHIAARENR--YDCVVLFLSRDSD  202 (237)
T ss_dssp             HHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHTTC--HHHHHHHHTTTCC
T ss_pred             HHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHhCC--HhHHHHHHHcCCC
Confidence            88888887 477788888888888888888888888887   78888888888888888888888  6666777788888


Q ss_pred             ccccccCCCchhHHhhhcccc
Q 046373          310 YGAVNKQNVSVTDVLIYGSRE  330 (364)
Q Consensus       310 ~~~~n~~g~t~l~~a~~~~~~  330 (364)
                      ++.+|..|+||+|+|+..+..
T Consensus       203 ~~~~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          203 VTLKNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             TTCCCTTSCCHHHHSCTTCHH
T ss_pred             CCccCCCCCCHHHHHHHHHHH
Confidence            888888888888888665543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.5e-39  Score=272.29  Aligned_cols=217  Identities=22%  Similarity=0.235  Sum_probs=199.1

Q ss_pred             hhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCC
Q 046373           35 LTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTN  114 (364)
Q Consensus        35 ~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  114 (364)
                      ..+.+|.||||+|  +..|+.+++++|++.    +.+++..+..|.||||+|+..|+.+++++|++.++.     ++..+
T Consensus         6 ~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~   74 (237)
T 3b7b_A            6 MEHQNKRSPLHAA--AEAGHVDICHMLVQA----GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-----VDPKD   74 (237)
T ss_dssp             CSSCCSCCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-----CCCCC
T ss_pred             cccCCCCCHHHHH--HHcCcHHHHHHHHHc----CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-----CCCCC
Confidence            4567999999999  999999999999986    788899999999999999999999999999999865     67788


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHh
Q 046373          115 NEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH  194 (364)
Q Consensus       115 ~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~  194 (364)
                      ..|.||||+|+..|+.+++++|++.++......+..|.||||+|+..++.+++++|++.|++++.++.            
T Consensus        75 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~------------  142 (237)
T 3b7b_A           75 AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN------------  142 (237)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT------------
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCC------------
Confidence            99999999999999999999999998544557788899999999999999999999999999876654            


Q ss_pred             hhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccc
Q 046373          195 FYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSL  274 (364)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  274 (364)
                                      .|.||||.|+..|+.+++++|++++++ ++..|..|.||||+|+..++.+++++|+++   |++
T Consensus       143 ----------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---gad  202 (237)
T 3b7b_A          143 ----------------EENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSR---DSD  202 (237)
T ss_dssp             ----------------TSCCHHHHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT---TCC
T ss_pred             ----------------CCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc---CCC
Confidence                            567788888888999999999999998 578899999999999999999999999998   999


Q ss_pred             cccCCCCCCcHHHHHHhcCC
Q 046373          275 IYEGDNNGNTPLHVLAAIRP  294 (364)
Q Consensus       275 i~~~d~~g~t~L~~A~~~~~  294 (364)
                      ++.+|..|.||||+|+..++
T Consensus       203 ~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          203 VTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             TTCCCTTSCCHHHHSCTTCH
T ss_pred             CCccCCCCCCHHHHHHHHHH
Confidence            99999999999999999998

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.8e-39  Score=270.54  Aligned_cols=223  Identities=22%  Similarity=0.239  Sum_probs=192.4

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCC
Q 046373           72 LLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYG  151 (364)
Q Consensus        72 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~  151 (364)
                      ++..|.+|.||||+|+..|+.+++++|++.... ....++..+..|.||||+|+..|+.+++++|++.|+++. ..+..|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g   79 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQ-GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHG   79 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHh-cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCC
Confidence            356789999999999999999999999984211 012377888999999999999999999999999999866 678889


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCC----CCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHH
Q 046373          152 KTSLYMAAEGRYSEMVIELLENCT----SVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHART  227 (364)
Q Consensus       152 ~t~l~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~  227 (364)
                      .||||+|+..++.+++++|++.+.    +++..+                            ..|.||||.|+..|+.++
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~----------------------------~~g~t~L~~A~~~~~~~~  131 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN----------------------------YDGLTALHVAVNTECQET  131 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCC----------------------------TTSCCHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccccccC----------------------------cCCCcHHHHHHHcCCHHH
Confidence            999999999999999999999987    443333                            367888899999999999


Q ss_pred             HHHHHhcCCccccccc-CCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhccc
Q 046373          228 VETILFLDPKCYELVD-HRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDA  306 (364)
Q Consensus       228 ~~~Ll~~~~~~~~~~d-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~  306 (364)
                      +++|++++.++ +..+ ..|.||||+|+..++.+++++|++.   |++++.+|..|.||||+|+..++  ...+.+|+++
T Consensus       132 ~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~  205 (241)
T 1k1a_A          132 VQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGL--LPLVRTLVRS  205 (241)
T ss_dssp             HHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTC--HHHHHHHHHT
T ss_pred             HHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCC--HHHHHHHHhc
Confidence            99999999984 6666 7899999999999999999999998   89999999999999999999999  6677788899


Q ss_pred             CCcccccccCCCchhHHhhhcccc
Q 046373          307 GGNYGAVNKQNVSVTDVLIYGSRE  330 (364)
Q Consensus       307 ~~~~~~~n~~g~t~l~~a~~~~~~  330 (364)
                      |++++.+|..|+||+|+|+..+..
T Consensus       206 ga~~~~~~~~g~tpl~~A~~~~~~  229 (241)
T 1k1a_A          206 GADSSLKNCHNDTPLMVARSRRVI  229 (241)
T ss_dssp             TCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHhcCcH
Confidence            999999999999999999655443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.1e-40  Score=297.23  Aligned_cols=258  Identities=19%  Similarity=0.161  Sum_probs=218.3

Q ss_pred             ChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHH
Q 046373            7 YPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLA   86 (364)
Q Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A   86 (364)
                      .++||.|+..|++++|++|++.+ .+....+..|.||||+|  +..|+.+++++|++.    +.  +..+.+|.||||+|
T Consensus        21 ~t~L~~Aa~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~--~~~~~~g~t~L~~A   91 (364)
T 3ljn_A           21 MEKIHVAARKGQTDEVRRLIETG-VSPTIQNRFGCTALHLA--CKFGCVDTAKYLASV----GE--VHSLWHGQKPIHLA   91 (364)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHH--HHHCCHHHHHHHHHH----CC--CCCCBTTBCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCcHHHHH--HHcCCHHHHHHHHHC----CC--CccccCCCCHHHHH
Confidence            57999999999999999999997 77778888999999999  999999999999996    44  33345799999999


Q ss_pred             HHcCCHHHHHHHHHHhhHHHhHhhhc-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCCCCC
Q 046373           87 AKFGHSNIVSFLIERAKLAAWQMMRM-----------------TNNEKNTALHEAVCHG--NVQVVKILTKQDPDYPYSE  147 (364)
Q Consensus        87 ~~~~~~~~v~~Ll~~~~~~~~~~~~~-----------------~~~~g~t~l~~a~~~~--~~e~v~~Ll~~~~~~~~~~  147 (364)
                      +..|+.+++++|++.+... ...++.                 .+..|.||||+|+..|  +.+++++|++.|++++ ..
T Consensus        92 ~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~-~~  169 (364)
T 3ljn_A           92 VMANKTDLVVALVEGAKER-GQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT-AK  169 (364)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-TCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT-CC
T ss_pred             HHcCCHHHHHHHHHhcccc-CCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc-cc
Confidence            9999999999999994321 011222                 7788999999999999  9999999999999976 77


Q ss_pred             CcCCchHHHHHHhcCCHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhc
Q 046373          148 NKYGKTSLYMAAEGRYSEMVIELLENCTS-----VSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQ  222 (364)
Q Consensus       148 ~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~  222 (364)
                      +..|.||||+|+..|+.+++++|++.|++     ++..+.                            .|.||||+|+..
T Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~----------------------------~g~t~L~~A~~~  221 (364)
T 3ljn_A          170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK----------------------------QGNSHLHWAILI  221 (364)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT----------------------------TCCCTTHHHHTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCC----------------------------CCCcHHHHHHHc
Confidence            88899999999999999999999999988     554443                            577888888999


Q ss_pred             CCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCccccccccc------------CCCCCCcHHHHHH
Q 046373          223 GHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYE------------GDNNGNTPLHVLA  290 (364)
Q Consensus       223 ~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~------------~d~~g~t~L~~A~  290 (364)
                      |+.+++++|+++|++ ++..|..|+||||+|+..|+.+++++|+++   +++++.            .+..++||++.|+
T Consensus       222 g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa  297 (364)
T 3ljn_A          222 NWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQK---TDVFLIQACPYHNGTTVLPDRVVWLDFVPAA  297 (364)
T ss_dssp             TCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHH---SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSS
T ss_pred             CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHc---CCchhhhcCcccCcccccccccccccchhhh
Confidence            999999999999999 588999999999999999999999999997   433322            4567899999999


Q ss_pred             hcCCcceeehhhhcccCCc
Q 046373          291 AIRPKEFFKIKVRYDAGGN  309 (364)
Q Consensus       291 ~~~~~~~~~~~ll~~~~~~  309 (364)
                      ..++  ...+..|+..+++
T Consensus       298 ~~~~--~~~v~~ll~~~~~  314 (364)
T 3ljn_A          298 ADPS--KQEVLQLLQEKLD  314 (364)
T ss_dssp             CCHH--HHHHHHHHHHHHH
T ss_pred             hccC--HHHHHHHHHHHHH
Confidence            9987  3344444445554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.4e-39  Score=270.05  Aligned_cols=225  Identities=24%  Similarity=0.272  Sum_probs=144.7

Q ss_pred             cCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCC
Q 046373           39 TKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKN  118 (364)
Q Consensus        39 ~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~  118 (364)
                      .+.+|||.|  ++.|+.+.++++++.   .+...+..+..|.||||+|+..|+.+++++|++.+.+     ++..+..|.
T Consensus         5 ~~~~~l~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~   74 (231)
T 3aji_A            5 VSNIMICNL--AYSGKLDELKERILA---DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-----VNDKDDAGW   74 (231)
T ss_dssp             CSSSHHHHH--HHHTCHHHHHHHHHH---CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----SCCCCTTSC
T ss_pred             cccchHHHH--HHhCCHHHHHHHHHh---chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-----CCCcCCCCC
Confidence            456666666  666666666666652   3344555666667777777777777777777766644     455666667


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhh
Q 046373          119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE  198 (364)
Q Consensus       119 t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~  198 (364)
                      ||||+|+..|+.+++++|+++++++. ..+..|.||||+|+..++.+++++|++.|++++..+.                
T Consensus        75 t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----------------  137 (231)
T 3aji_A           75 SPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH----------------  137 (231)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------------
T ss_pred             CHHHHHHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------------
Confidence            77777777777777777776666654 4555666777777777777777777776666654433                


Q ss_pred             cchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccC
Q 046373          199 NDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEG  278 (364)
Q Consensus       199 ~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~  278 (364)
                                  .+.||||.|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|+++   |++++.+
T Consensus       138 ------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~  201 (231)
T 3aji_A          138 ------------YDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQ---GASIYIE  201 (231)
T ss_dssp             ------------TSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCC
T ss_pred             ------------CCCcHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCCC
Confidence                        345555666666666777777766666 355666677777777777777777777766   6666666


Q ss_pred             CCCCCcHHHHHHhcCCcceeehhhhcccCC
Q 046373          279 DNNGNTPLHVLAAIRPKEFFKIKVRYDAGG  308 (364)
Q Consensus       279 d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~  308 (364)
                      |..|.||||+|+..++  .....+|.+.|+
T Consensus       202 ~~~g~t~l~~A~~~~~--~~i~~lL~~~~a  229 (231)
T 3aji_A          202 NKEEKTPLQVAKGGLG--LILKRLAEGEEA  229 (231)
T ss_dssp             CTTSCCHHHHSCHHHH--HHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHhhHH--HHHHHHHccccc
Confidence            6677777777766666  444444444443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.4e-39  Score=270.05  Aligned_cols=213  Identities=23%  Similarity=0.198  Sum_probs=145.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHH
Q 046373           78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYM  157 (364)
Q Consensus        78 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~  157 (364)
                      .+.+|||.|+..|+.+++++|++.+...    .+..+..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~   79 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSL----ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHI   79 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGG----GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhh----hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-CcCCCCCCHHHH
Confidence            4567777777777777777777665432    45566677777777777777777777777776654 556667777777


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCc
Q 046373          158 AAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPK  237 (364)
Q Consensus       158 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~  237 (364)
                      |+..|+.+++++|++.|++++..+.                            .|.||||.|+..|+.+++++|++++.+
T Consensus        80 A~~~~~~~~v~~Ll~~g~~~~~~~~----------------------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~  131 (231)
T 3aji_A           80 AASAGXDEIVKALLVKGAHVNAVNQ----------------------------NGCTPLHYAASKNRHEIAVMLLEGGAN  131 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCHHHHHHHHHHcCCCCCCCCC----------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            7777777777777777776654443                            355566666666777777777777766


Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCC
Q 046373          238 CYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQN  317 (364)
Q Consensus       238 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g  317 (364)
                       ++..+..|.||||+|+..|+.+++++|++.   +++++.+|..|.||||+|+..++  ...+.+|+++|++++.+|..|
T Consensus       132 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~ga~~~~~~~~g  205 (231)
T 3aji_A          132 -PDAKDHYDATAMHRAAAKGNLKMVHILLFY---KASTNIQDTEGNTPLHLACDEER--VEEAKFLVTQGASIYIENKEE  205 (231)
T ss_dssp             -TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTCCSCCCCTTS
T ss_pred             -CCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---CCCccccCCCCCCHHHHHHHCCC--HHHHHHHHHCCCCCCCCCCCC
Confidence             355666777777777777777777777776   66777777777777777777777  555566666777777777777


Q ss_pred             CchhHHhhhccc
Q 046373          318 VSVTDVLIYGSR  329 (364)
Q Consensus       318 ~t~l~~a~~~~~  329 (364)
                      +||+++|..++.
T Consensus       206 ~t~l~~A~~~~~  217 (231)
T 3aji_A          206 KTPLQVAKGGLG  217 (231)
T ss_dssp             CCHHHHSCHHHH
T ss_pred             CCHHHHHHhhHH
Confidence            777777754443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.9e-38  Score=263.98  Aligned_cols=210  Identities=19%  Similarity=0.148  Sum_probs=171.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCcCCchHHH
Q 046373           79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQD--PDYPYSENKYGKTSLY  156 (364)
Q Consensus        79 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~--~~~~~~~~~~~~t~l~  156 (364)
                      |.||||+|+..|+.+++++|++.++..    ....+..|.||||+|+..|+.+++++|++++  +++....+..|.||||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~   77 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSL----LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH   77 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGG----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccc----cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHH
Confidence            678999999999999999998888653    4457888899999999999999999999888  4444336678889999


Q ss_pred             HHHhcCCHHHHHHHHHcC--CCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhc
Q 046373          157 MAAEGRYSEMVIELLENC--TSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFL  234 (364)
Q Consensus       157 ~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~  234 (364)
                      +|+..|+.+++++|++.|  ++++..+.                            .|.||||.|+..|+.+++++|+++
T Consensus        78 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~----------------------------~g~t~L~~A~~~~~~~~~~~Ll~~  129 (228)
T 2dzn_A           78 IACSVGNLEVVKSLYDRPLKPDLNKITN----------------------------QGVTCLHLAVGKKWFEVSQFLIEN  129 (228)
T ss_dssp             HHHHHCCHHHHHHHHSSSSCCCTTCCCT----------------------------TCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHhCCCCcccccCCc----------------------------CCCCHHHHHHHcCCHhHHHHHHHc
Confidence            999999999999999888  55554433                            467777888888888999999988


Q ss_pred             CCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccc-cccccCCCCCCcHHHHHHhcCCcceeehhhhc-ccCCcccc
Q 046373          235 DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLAR-SLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRY-DAGGNYGA  312 (364)
Q Consensus       235 ~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~-~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~-~~~~~~~~  312 (364)
                      |.+ ++..|..|+||||+|+..|+.+++++|++.   + ++++.+|..|.||||+|+..++  ...+.+|+ +.|++++.
T Consensus       130 g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~d~~g~t~L~~A~~~~~--~~~v~~Ll~~~ga~~~~  203 (228)
T 2dzn_A          130 GAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGL---GKSAVNWQDKQGWTPLFHALAEGH--GDAAVLLVEKYGAEYDL  203 (228)
T ss_dssp             TCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHTT---TCCCSCCCCTTSCCHHHHHHHTTC--HHHHHHHHHHHCCCSCC
T ss_pred             CCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhc---CcccccCcCCCCCCHHHHHHHcCC--HHHHHHHHHhcCCCCCc
Confidence            888 577888899999999999999999999887   6 8888888889999999999988  56666666 77888888


Q ss_pred             cccCCCchhHHhhh
Q 046373          313 VNKQNVSVTDVLIY  326 (364)
Q Consensus       313 ~n~~g~t~l~~a~~  326 (364)
                      +|..|+||+++|..
T Consensus       204 ~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          204 VDNKGAKAEDVALN  217 (228)
T ss_dssp             BCTTSCBGGGGCSS
T ss_pred             cCCCCCcHHHHHHH
Confidence            99999999999854

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.9e-39  Score=275.77  Aligned_cols=220  Identities=22%  Similarity=0.168  Sum_probs=162.9

Q ss_pred             hhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCC
Q 046373           36 TAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNN  115 (364)
Q Consensus        36 ~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  115 (364)
                      .+.+|.||||+|  ++.|+.+++++|++. ......++..+..|.||||+|+..|+.+++++|+++|++     ++..+.
T Consensus         5 ~d~~g~t~L~~A--~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~   76 (282)
T 1oy3_D            5 VTEDGDTALHLA--VIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-----VLVAER   76 (282)
T ss_dssp             CCTTCCCHHHHH--HHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----SSCCCT
T ss_pred             cCCCCCcHHHHH--HHcCCHHHHHHHHhc-CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCC
Confidence            345777777777  777777777777764 111222666777777777777777777777777777755     566677


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCC----------------------------------------------CCCCCc
Q 046373          116 EKNTALHEAVCHGNVQVVKILTKQDPDY----------------------------------------------PYSENK  149 (364)
Q Consensus       116 ~g~t~l~~a~~~~~~e~v~~Ll~~~~~~----------------------------------------------~~~~~~  149 (364)
                      .|.||||+|+..|+.+++++|+++++..                                              ....+.
T Consensus        77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (282)
T 1oy3_D           77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY  156 (282)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCT
T ss_pred             CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCC
Confidence            7777777777777777777777765441                                              225567


Q ss_pred             CCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHH
Q 046373          150 YGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVE  229 (364)
Q Consensus       150 ~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~  229 (364)
                      .|.||||+|+..|+.+++++|+++|++++..+.                           ..|.||||+|+..|+.++++
T Consensus       157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---------------------------~~g~tpL~~A~~~~~~~~v~  209 (282)
T 1oy3_D          157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP---------------------------TCGRTPLHLAVEAQAASVLE  209 (282)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT---------------------------TTCCCHHHHHHHTTCHHHHH
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---------------------------CCCcCHHHHHHHcCCHHHHH
Confidence            899999999999999999999999988875442                           14889999999999999999


Q ss_pred             HHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCC
Q 046373          230 TILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRP  294 (364)
Q Consensus       230 ~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~  294 (364)
                      +|+++|++ ++.+|..|+||||+|+..++.+++++|+++   |++++.+|..|.|||++|....+
T Consensus       210 ~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          210 LLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAH---GAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHT---TCCCCCCC---------------
T ss_pred             HHHHcCCC-CcccccCCCCHHHHHHHcCCcHHHHHHHHc---CCCcCcCCCcccccccccCCccc
Confidence            99999999 588999999999999999999999999998   99999999999999999988765

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.2e-39  Score=272.35  Aligned_cols=220  Identities=20%  Similarity=0.211  Sum_probs=133.5

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHh---HhhhcCCCCCCcHHHHHHHcCCH-HHHHHHHhcCCCCCCCCCcC
Q 046373           75 VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAW---QMMRMTNNEKNTALHEAVCHGNV-QVVKILTKQDPDYPYSENKY  150 (364)
Q Consensus        75 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~---~~~~~~~~~g~t~l~~a~~~~~~-e~v~~Ll~~~~~~~~~~~~~  150 (364)
                      +|..+.+||+.|+..|+.++|++|++.++.+..   ..++..+..|.|||+.|+..+.. .++++|++.|++++ ..+..
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn-~~d~~   85 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN-VTSQD   85 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTT-CCCTT
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-CcCCC
Confidence            345556777777777777777777776654211   12344566677777777766654 46777777777765 56667


Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHH
Q 046373          151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVET  230 (364)
Q Consensus       151 ~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~  230 (364)
                      |.||||+|+..|+.+++++|++.|++++..+.                            .|.||++.|+..++.+++++
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~----------------------------~g~t~l~~a~~~~~~~~~~~  137 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANAGARNA----------------------------DQAVPLHLACQQGHFQVVKC  137 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCT----------------------------TCCCHHHHHHHHTCHHHHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCC----------------------------CCCCccccccccChHHHHHH
Confidence            77777777777777777777777777665444                            35556666666677777777


Q ss_pred             HHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcc
Q 046373          231 ILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNY  310 (364)
Q Consensus       231 Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~  310 (364)
                      |++++++ ++.+|..|+||||+|+..|+.+++++|++.   |+++|.++..|.||||+|+..|+  ..++.+|+++|+++
T Consensus       138 Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~---gadvn~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~Gad~  211 (269)
T 4b93_B          138 LLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQH---GASINASNNKGNTALHEAVIEKH--VFVVELLLLHGASV  211 (269)
T ss_dssp             HHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHT---TCCTTCBCTTSCBHHHHHHHTTC--HHHHHHHHHTTCCS
T ss_pred             HHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCccccCCCcHHHHHHHcCC--HHHHHHHHHCCCCC
Confidence            7777777 466777777777777777777777777776   77777777777777777777777  55556666777777


Q ss_pred             cccccCCCchhHHhhhccc
Q 046373          311 GAVNKQNVSVTDVLIYGSR  329 (364)
Q Consensus       311 ~~~n~~g~t~l~~a~~~~~  329 (364)
                      +.+|..|+||||+|+.++.
T Consensus       212 ~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          212 QVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             CCCCTTSCCSGGGSCTTCH
T ss_pred             CCcCCCCCCHHHHHHhCCc
Confidence            7777777777777765443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7e-38  Score=260.59  Aligned_cols=214  Identities=27%  Similarity=0.296  Sum_probs=187.3

Q ss_pred             CCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhc-CCCCCC
Q 046373           40 KNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRM-TNNEKN  118 (364)
Q Consensus        40 g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-~~~~g~  118 (364)
                      |.||||+|  ++.|+.+++++|++.   .+...+..|..|.||||+|+..|+.+++++|++.++..   .+.. .+..|.
T Consensus         2 g~t~L~~A--~~~g~~~~v~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~~~g~   73 (228)
T 2dzn_A            2 SNYPLHQA--CMENEFFKVQELLHS---KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV---NLDDYPDDSGW   73 (228)
T ss_dssp             -CCHHHHH--HHTTCHHHHHHHHHH---CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTC---CGGGCCCTTSC
T ss_pred             CccHHHHH--HHhCCHHHHHHHHhc---CccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccc---cccccCCCCCC
Confidence            78999999  999999999999884   34445558999999999999999999999999998431   1344 788999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhh
Q 046373          119 TALHEAVCHGNVQVVKILTKQD--PDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFY  196 (364)
Q Consensus       119 t~l~~a~~~~~~e~v~~Ll~~~--~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  196 (364)
                      ||||+|+..|+.+++++|++++  +++. ..+..|.||||+|+..++.+++++|++.|++++.++.              
T Consensus        74 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~--------------  138 (228)
T 2dzn_A           74 TPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK--------------  138 (228)
T ss_dssp             CHHHHHHHHCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT--------------
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCC--------------
Confidence            9999999999999999999998  6654 6778899999999999999999999999999876654              


Q ss_pred             hhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHH-hCccccccc
Q 046373          197 FENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILL-KNPLARSLI  275 (364)
Q Consensus       197 ~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll-~~~~~~~~i  275 (364)
                                    .|.||||.|+..|+.+++++|++++...++..|..|+||||+|+..++.+++++|+ +.   |+++
T Consensus       139 --------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~---ga~~  201 (228)
T 2dzn_A          139 --------------FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY---GAEY  201 (228)
T ss_dssp             --------------TSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---CCCS
T ss_pred             --------------CCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---CCCC
Confidence                          57778888888999999999999994447889999999999999999999999999 76   8999


Q ss_pred             ccCCCCCCcHHHHHHhcC
Q 046373          276 YEGDNNGNTPLHVLAAIR  293 (364)
Q Consensus       276 ~~~d~~g~t~L~~A~~~~  293 (364)
                      +.+|..|.||||+|+..+
T Consensus       202 ~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          202 DLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             CCBCTTSCBGGGGCSSTT
T ss_pred             CccCCCCCcHHHHHHHHH
Confidence            999999999999997653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.9e-39  Score=272.86  Aligned_cols=211  Identities=22%  Similarity=0.243  Sum_probs=140.8

Q ss_pred             ChhHHHHHhcCChHHhhhccCChhHH-------HhhhhccCCchHHHHHHHHHhcCC-ChHHHHHHHhcCCccccccCCC
Q 046373            7 YPNFFNAAAAGDAETFKRNTTSDEIE-------SLLTAQTKNTILHINIISQKRKNG-STKFIGEMLKKCPSLLLQVNAK   78 (364)
Q Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~-------~~~~~~~g~t~L~~A~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~   78 (364)
                      .++|+.||..|++++|++|++.+..+       ....+..|.||||.|  +..+..+ ++++|++.    +.+++..|.+
T Consensus        12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a--~~~~~~~~~v~~Ll~~----Gadvn~~d~~   85 (269)
T 4b93_B           12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQC--PKCAPAQKRLAKVPAS----GLGVNVTSQD   85 (269)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTCC------------------------------------------C----CCCTTCCCTT
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHH--HHhCCHHHHHHHHHHC----CCCCCCcCCC
Confidence            36899999999999999999986221       124455677888888  7665543 55666553    7777888888


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHH
Q 046373           79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMA  158 (364)
Q Consensus        79 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A  158 (364)
                      |+||||+|+..|+.++|++|++.+++     ++..+..|.||+|+|+..++.+++++|++.|++++ ..|..|.||||+|
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~-----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n-~~d~~g~TpL~~A  159 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGAN-----AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN-KKDLSGNTPLIYA  159 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCC-----cCccCCCCCCccccccccChHHHHHHHHHCCCCCC-CCCCCCCCHHHHH
Confidence            88888888888888888888887765     56677778888888888888888888888877755 5677788888888


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcc
Q 046373          159 AEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKC  238 (364)
Q Consensus       159 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~  238 (364)
                      +..|+.+++++|++.|++++..+.                            .|.||||+|+..|+.+++++|+++|++ 
T Consensus       160 ~~~g~~~~v~~Ll~~gadvn~~~~----------------------------~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-  210 (269)
T 4b93_B          160 CSGGHHELVALLLQHGASINASNN----------------------------KGNTALHEAVIEKHVFVVELLLLHGAS-  210 (269)
T ss_dssp             HHTTCGGGHHHHHHTTCCTTCBCT----------------------------TSCBHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             HHCCCHHHHHHHHHCCCCCCcccc----------------------------CCCcHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            888888888888888877765443                            466677777777788888888888777 


Q ss_pred             cccccCCCCcHHHHHHHcCC
Q 046373          239 YELVDHRGWNFLHYAMVSFK  258 (364)
Q Consensus       239 ~~~~d~~g~t~l~~a~~~~~  258 (364)
                      ++.+|..|+||||+|+..++
T Consensus       211 ~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          211 VQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             SCCCCTTSCCSGGGSCTTCH
T ss_pred             CCCcCCCCCCHHHHHHhCCc
Confidence            47777788888888876654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4e-37  Score=255.16  Aligned_cols=214  Identities=20%  Similarity=0.158  Sum_probs=124.2

Q ss_pred             hcCCChHHHHHHHhcCCccccc-cCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHH
Q 046373           53 RKNGSTKFIGEMLKKCPSLLLQ-VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQ  131 (364)
Q Consensus        53 ~~~~~~~~l~~~l~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e  131 (364)
                      |+.+++++|++.    +.+++. .|..|.||||+|+..|+.+++++|++++++     ++..+..|.||||+|+..|+.+
T Consensus         2 g~~~~i~~Ll~~----g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~   72 (223)
T 2f8y_A            2 DAPAVISDFIYQ----GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-----ANIQDNMGRTPLHAAVSADAQG   72 (223)
T ss_dssp             ---CCEETTEET----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CcHHHHHHHHHc----CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCCHH
Confidence            445555555442    333332 355666666666666666666666666544     4555566666666666666666


Q ss_pred             HHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCC
Q 046373          132 VVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDR  211 (364)
Q Consensus       132 ~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~  211 (364)
                      ++++|++.++......+..|.||||+|+..++.+++++|++.|++++..+.                            .
T Consensus        73 ~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----------------------------~  124 (223)
T 2f8y_A           73 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD----------------------------L  124 (223)
T ss_dssp             HHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT----------------------------T
T ss_pred             HHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCC----------------------------C
Confidence            666666665533335555566666666666666666666666665543332                            3


Q ss_pred             CchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHh
Q 046373          212 KMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAA  291 (364)
Q Consensus       212 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~  291 (364)
                      |.||||.|+..|+.+++++|++++++ ++..|..|.||||+|+..++.+++++|+++   +++++.+|..|.||||+|++
T Consensus       125 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~  200 (223)
T 2f8y_A          125 GKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQE  200 (223)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHc---CCCCccccccCCCHHHHHHH
Confidence            45555555566666666666666655 355566666666666666666666666665   56666666666666666666


Q ss_pred             cCCcceeehhhhcccCCc
Q 046373          292 IRPKEFFKIKVRYDAGGN  309 (364)
Q Consensus       292 ~~~~~~~~~~ll~~~~~~  309 (364)
                      .++  ..++.+|++.|+.
T Consensus       201 ~~~--~~i~~~L~~~g~~  216 (223)
T 2f8y_A          201 RMH--HDIVRLLDEYNLV  216 (223)
T ss_dssp             TTC--HHHHHHHHHTTCS
T ss_pred             hcc--hHHHHHHHHcCCC
Confidence            666  4444445555554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.5e-38  Score=271.88  Aligned_cols=253  Identities=19%  Similarity=0.134  Sum_probs=210.0

Q ss_pred             HHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCH
Q 046373           13 AAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHS   92 (364)
Q Consensus        13 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~   92 (364)
                      +++..+.+.+..++..++  ....+..|.||||+|  +..|+.+++++|++.    +.+++..  +|.||||+|+..|+.
T Consensus         6 ~i~~~~~~~v~~lL~~~~--~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~--~g~t~L~~A~~~g~~   75 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSKD--TFKADVHGHSASYYA--IADNNVRLVCTLLNA----GALKNLL--ENEFPLHQAATLEDT   75 (285)
T ss_dssp             TGGGCCHHHHHHHHHSTT--TTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TGGGSCC--TTCCHHHHHTTSSSC
T ss_pred             HHHhcCHHHHHHHHHhCC--CCccCCCCCCHHHHH--HHcCCHHHHHHHHhC----CCCCCCC--CCCCHHHHHHHcCCH
Confidence            455666666666665542  456777999999999  999999999999986    6777766  489999999999999


Q ss_pred             HHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCC-chHHHHHHhcCCHHHHHHHH
Q 046373           93 NIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYG-KTSLYMAAEGRYSEMVIELL  171 (364)
Q Consensus        93 ~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~-~t~l~~A~~~~~~~~v~~Ll  171 (364)
                      +++++|+++|++     ++..+..|.||||+|+..|+.+++++|+++|++++ ..+..| .||||+|+..|+.+++++|+
T Consensus        76 ~~v~~Ll~~ga~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~~~~~v~~Ll  149 (285)
T 3kea_A           76 KIVKILLFSGLD-----DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFL  149 (285)
T ss_dssp             HHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCC-----CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999876     67888999999999999999999999999999866 667777 79999999999999999999


Q ss_pred             HcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcH-H
Q 046373          172 ENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNF-L  250 (364)
Q Consensus       172 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~-l  250 (364)
                      ++|++..                             ....|.||||.|+..|+.+++++|+++|++ ++..|..|+|| |
T Consensus       150 ~~g~~~~-----------------------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L  199 (285)
T 3kea_A          150 SEIPSTF-----------------------------DLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDI  199 (285)
T ss_dssp             TTSCTTC-----------------------------CCSTHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTH
T ss_pred             hCCCccc-----------------------------cccCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHH
Confidence            9987642                             111578999999999999999999999988 58889999997 9


Q ss_pred             HHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhh
Q 046373          251 HYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLI  325 (364)
Q Consensus       251 ~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~  325 (364)
                      |+|+..++.+++++|+++   |++++.+|.       .|+..++  ...+.+|+++|++++..+.  ...++.+.
T Consensus       200 ~~A~~~~~~~~v~~Ll~~---gad~~~~~~-------~a~~~~~--~~iv~~Ll~~g~~~~~~~~--~~~~~~~~  260 (285)
T 3kea_A          200 KLAIDNKDIEMLQALFKY---DINIYSANL-------ENVLLDD--AEIAKMIIEKHVEYKSDSY--TKDLDIVK  260 (285)
T ss_dssp             HHHHHHTCHHHHHHHTTS---CBCSTTTTG-------GGGTTTC--HHHHHHHHHHHHHHTTCTT--TTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHc---CCCCCCCCh-------hhhhcCC--HHHHHHHHHcCCCCCCccc--cchHHHHh
Confidence            999999999999999998   899988873       4566788  7777888899998754443  33444443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.9e-37  Score=257.97  Aligned_cols=229  Identities=19%  Similarity=0.175  Sum_probs=183.2

Q ss_pred             hccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCC
Q 046373           37 AQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNE  116 (364)
Q Consensus        37 ~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  116 (364)
                      +..|.++||.|  ++.|+.+++++|++.    +.+++..+..|.||||+|+..|+.+++++|+++++..    ....+..
T Consensus         6 d~~~~~~l~~A--~~~g~~~~~~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~----~~~~~~~   75 (240)
T 3eu9_A            6 DDYSTWDIVKA--TQYGIYERCRELVEA----GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV----DQLGGDL   75 (240)
T ss_dssp             SCGGGCCHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----TCCBTTT
T ss_pred             ccccchHHHHH--HHcCChHHHHHHHHc----CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc----hhhcCCc
Confidence            44788899999  999999999998885    6778888888999999999999999999999988652    2233455


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhh
Q 046373          117 KNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFY  196 (364)
Q Consensus       117 g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  196 (364)
                      |.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|++.|++++..+..             
T Consensus        76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-------------  141 (240)
T 3eu9_A           76 NSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN-------------  141 (240)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-------------
T ss_pred             CCChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCC-------------
Confidence            8899999999999999999999888865 66778899999999999999999999999888766654             


Q ss_pred             hhcchhhhhhhccCCCchHHHHHHhcCC-HHHHHHHHhcCCcccccccC-CCCcHHHHHHHcCCHHHHHHHHhCcccccc
Q 046373          197 FENDQTAADIADKDRKMTALHLAAGQGH-ARTVETILFLDPKCYELVDH-RGWNFLHYAMVSFKLHELKILLKNPLARSL  274 (364)
Q Consensus       197 ~~~~~~~~~~~~~~~~~t~L~~a~~~~~-~~~~~~Ll~~~~~~~~~~d~-~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  274 (364)
                                     |.||||.|+..+. .+++++|++.+.+ ++..+. .|.||||+|+..++.+++++|+++   |++
T Consensus       142 ---------------g~t~l~~a~~~~~~~~~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~  202 (240)
T 3eu9_A          142 ---------------GMTPLMWAAYRTHSVDPTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEA---GAN  202 (240)
T ss_dssp             ---------------SCCHHHHHHHHCCSSTTHHHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH---TCC
T ss_pred             ---------------CCcHHHHHHHhCChHHHHHHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHc---CCC
Confidence                           4455555553333 6788888888888 455665 788999999999999999988887   888


Q ss_pred             cccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcc
Q 046373          275 IYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNY  310 (364)
Q Consensus       275 i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~  310 (364)
                      ++.+|..|.||||+|++.++  ...+.+|++++++.
T Consensus       203 ~~~~~~~g~t~l~~A~~~~~--~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          203 VDAQNIKGESALDLAKQRKN--VWMINHLQEARQAK  236 (240)
T ss_dssp             TTCBCTTSCBHHHHHHHTTC--HHHHHHHHHHC---
T ss_pred             CCCcCCCCCCHHHHHHHcCc--HHHHHHHHHhhhcc
Confidence            88888888999999999888  66666666777664

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.7e-37  Score=266.27  Aligned_cols=236  Identities=21%  Similarity=0.177  Sum_probs=160.7

Q ss_pred             cCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCC
Q 046373           39 TKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKN  118 (364)
Q Consensus        39 ~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~  118 (364)
                      .|.||||+|  +..|+.+++++|++.    +.+++..|..|.||||+|+..|+.+++++|+++|++     ++..+..|.
T Consensus        39 ~~~t~l~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~~g~  107 (299)
T 1s70_B           39 DDGAVFLAA--CSSGDTEEVLRLLER----GADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-----INQPDNEGW  107 (299)
T ss_dssp             CHHHHHHHH--HHHTCHHHHHHHHHH----CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSC
T ss_pred             CCccHHHHH--HHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCC
Confidence            445666666  666666666666654    555666666666666666666666666666666544     455566666


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCChHHHHHHhhhh
Q 046373          119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN-CTSVSHEGPNGKTALHAAAMHFYF  197 (364)
Q Consensus       119 t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~  197 (364)
                      ||||+|+..|+.+++++|+++|+++. ..+..|.||||+|+..++.+++++++.. +.+++.                  
T Consensus       108 tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~------------------  168 (299)
T 1s70_B          108 IPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA------------------  168 (299)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHH------------------
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchh------------------
Confidence            66666666666666666666666544 4455566666666666666666655542 222110                  


Q ss_pred             hcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCccccccccc
Q 046373          198 ENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYE  277 (364)
Q Consensus       198 ~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~  277 (364)
                               .. ..+.++++        ..+..++..+.......+..|.||||+|+..|+.+++++|++.   +++++.
T Consensus       169 ---------~~-~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~d~~~  227 (299)
T 1s70_B          169 ---------AR-KEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RYDVNI  227 (299)
T ss_dssp             ---------HH-HHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT---TCCTTC
T ss_pred             ---------hh-hhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc---CCCCCC
Confidence                     00 01112222        2344455555554455678899999999999999999999998   899999


Q ss_pred             CCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhhhc
Q 046373          278 GDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYG  327 (364)
Q Consensus       278 ~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~~  327 (364)
                      +|..|.||||+|+..|+  ...+.+|+++|++++.+|..|+||+|+|...
T Consensus       228 ~d~~g~tpL~~A~~~~~--~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          228 KDYDGWTPLHAAAHWGK--EEACRILVENLCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             CCTTCCCHHHHHHHTTC--HHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred             cCCCCCcHHHHHHhcCC--HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence            99999999999999999  6677788899999999999999999999653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.2e-36  Score=252.24  Aligned_cols=211  Identities=19%  Similarity=0.177  Sum_probs=189.4

Q ss_pred             CChHHhhhccCChhHHHh-hhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHH
Q 046373           17 GDAETFKRNTTSDEIESL-LTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIV   95 (364)
Q Consensus        17 g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v   95 (364)
                      |+++++++|++.+ .+.. ..+..|.||||+|  +..|+.+++++|++.    +.+++..+..|.||||+|+..|+.+++
T Consensus         2 g~~~~i~~Ll~~g-~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v   74 (223)
T 2f8y_A            2 DAPAVISDFIYQG-ASLHNQTDRTGETALHLA--ARYSRSDAAKRLLEA----SADANIQDNMGRTPLHAAVSADAQGVF   74 (223)
T ss_dssp             ---CCEETTEETT-CCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHcC-CCcccccCCCCCchHHHH--HHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            7889999999998 4443 4467999999999  999999999999986    788899999999999999999999999


Q ss_pred             HHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCC
Q 046373           96 SFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCT  175 (364)
Q Consensus        96 ~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~  175 (364)
                      ++|++.++..    ++..+..|.||||+|+..++.+++++|++++++++ ..+..|.||||+|+..++.+++++|++.|+
T Consensus        75 ~~Ll~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  149 (223)
T 2f8y_A           75 QILIRNRATD----LDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGA  149 (223)
T ss_dssp             HHHHHBTTSC----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHcCCCC----cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999988632    67788999999999999999999999999999876 678889999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHH
Q 046373          176 SVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMV  255 (364)
Q Consensus       176 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~  255 (364)
                      +++..+.                            .|.||||.|+..|+.+++++|++++++ ++.+|..|.||+++|+.
T Consensus       150 ~~~~~~~----------------------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~  200 (223)
T 2f8y_A          150 NKDMQNN----------------------------REETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQE  200 (223)
T ss_dssp             CTTCCCT----------------------------TCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred             CCCCcCC----------------------------CCcCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHH
Confidence            9876655                            567788888889999999999999998 58889999999999999


Q ss_pred             cCCHHHHHHHHhC
Q 046373          256 SFKLHELKILLKN  268 (364)
Q Consensus       256 ~~~~~~~~~ll~~  268 (364)
                      .++.+++++|+++
T Consensus       201 ~~~~~i~~~L~~~  213 (223)
T 2f8y_A          201 RMHHDIVRLLDEY  213 (223)
T ss_dssp             TTCHHHHHHHHHT
T ss_pred             hcchHHHHHHHHc
Confidence            9999999999998

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.9e-36  Score=252.63  Aligned_cols=220  Identities=21%  Similarity=0.219  Sum_probs=198.0

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCC
Q 046373           72 LLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYG  151 (364)
Q Consensus        72 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~  151 (364)
                      ++..|..|.|||+.|+..|+.+++++|++.+.+     ++..+..|.||||+|+..|+.+++++|++++++.....+..|
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~   76 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD-----VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLN   76 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTT
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCC-----cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcC
Confidence            355688899999999999999999999999865     678889999999999999999999999999999887777779


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHH
Q 046373          152 KTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETI  231 (364)
Q Consensus       152 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~L  231 (364)
                      .||||+|+..|+.+++++|++.|++++..+.                            .+.||||.|+..|+.+++++|
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------------------------~g~t~l~~A~~~~~~~~~~~L  128 (240)
T 3eu9_A           77 STPLHWATRQGHLSMVVQLMKYGADPSLIDG----------------------------EGCSCIHLAAQFGHTSIVAYL  128 (240)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHH
T ss_pred             CChhHHHHHcCCHHHHHHHHHcCCCCcccCC----------------------------CCCCHHHHHHHcCHHHHHHHH
Confidence            9999999999999999999999999876554                            567888888889999999999


Q ss_pred             HhcCCcccccccCCCCcHHHHHHHcCC-HHHHHHHHhCcccccccccCCC-CCCcHHHHHHhcCCcceeehhhhcccCCc
Q 046373          232 LFLDPKCYELVDHRGWNFLHYAMVSFK-LHELKILLKNPLARSLIYEGDN-NGNTPLHVLAAIRPKEFFKIKVRYDAGGN  309 (364)
Q Consensus       232 l~~~~~~~~~~d~~g~t~l~~a~~~~~-~~~~~~ll~~~~~~~~i~~~d~-~g~t~L~~A~~~~~~~~~~~~ll~~~~~~  309 (364)
                      ++++.+ ++..+..|.||||+|+..++ .+++++|++.   +++++..+. .|.||||+|+..++  ...+.+|+++|++
T Consensus       129 l~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~---~~~~~~~~~~~g~t~L~~A~~~~~--~~~v~~Ll~~g~~  202 (240)
T 3eu9_A          129 IAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF---NVSVNLGDKYHKNTALHWAVLAGN--TTVISLLLEAGAN  202 (240)
T ss_dssp             HHTTCC-TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT---TCCTTCCCTTTCCCHHHHHHHHTC--HHHHHHHHHHTCC
T ss_pred             HhcCCC-ccccCCCCCcHHHHHHHhCChHHHHHHHHhc---CCCcchhhccCCCcHHHHHHHcCC--HHHHHHHHHcCCC
Confidence            999998 57889999999999997766 7899999998   899999987 89999999999999  6677788889999


Q ss_pred             ccccccCCCchhHHhhhcccc
Q 046373          310 YGAVNKQNVSVTDVLIYGSRE  330 (364)
Q Consensus       310 ~~~~n~~g~t~l~~a~~~~~~  330 (364)
                      ++.+|..|+||+++|+..+..
T Consensus       203 ~~~~~~~g~t~l~~A~~~~~~  223 (240)
T 3eu9_A          203 VDAQNIKGESALDLAKQRKNV  223 (240)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCH
T ss_pred             CCCcCCCCCCHHHHHHHcCcH
Confidence            999999999999999765543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.3e-38  Score=273.56  Aligned_cols=235  Identities=21%  Similarity=0.198  Sum_probs=197.7

Q ss_pred             ChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHH
Q 046373            7 YPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLA   86 (364)
Q Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A   86 (364)
                      .++|+.|+..|++++|++|++.+ .+....+..|.||||+|  +..|+.+++++|++.    +.+++..|..|.||||+|
T Consensus        41 ~t~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----ga~~~~~~~~g~tpL~~A  113 (299)
T 1s70_B           41 GAVFLAACSSGDTEEVLRLLERG-ADINYANVDGLTALHQA--CIDDNVDMVKFLVEN----GANINQPDNEGWIPLHAA  113 (299)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHC-CCTTCBCTTCCBHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHH--HHcCCHHHHHHHHHC----CCCCCCCCCCCCcHHHHH
Confidence            46899999999999999999998 77888888999999999  999999999999986    888999999999999999


Q ss_pred             HHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHH
Q 046373           87 AKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEM  166 (364)
Q Consensus        87 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~  166 (364)
                      +..|+.+++++|++++++     ++..+..|.||||+|+..++.+++++++..........+..+.++++        ..
T Consensus       114 ~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~  180 (299)
T 1s70_B          114 ASCGYLDIAEYLISQGAH-----VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RD  180 (299)
T ss_dssp             HHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HH
T ss_pred             HHcCCHHHHHHHHhCCCC-----CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HH
Confidence            999999999999999976     67889999999999999999999999887533211111111222222        23


Q ss_pred             HHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCC
Q 046373          167 VIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRG  246 (364)
Q Consensus       167 v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g  246 (364)
                      +..++..+....                           ......|.||||.|+..|+.+++++|+++|++ ++..|..|
T Consensus       181 ~~~~l~~~~~~~---------------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g  232 (299)
T 1s70_B          181 ARQWLNSGHIND---------------------------VRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDG  232 (299)
T ss_dssp             HHHHHHHTCCCC---------------------------CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTC
T ss_pred             HHHHHhccCcch---------------------------hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCC
Confidence            444555543321                           11223688999999999999999999999998 58899999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhc
Q 046373          247 WNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAI  292 (364)
Q Consensus       247 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~  292 (364)
                      +||||+|+..|+.+++++|+++   |++++.+|..|.||||+|.+.
T Consensus       233 ~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          233 WTPLHAAAHWGKEEACRILVEN---LCDMEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCTTTSCCSG
T ss_pred             CcHHHHHHhcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHH
Confidence            9999999999999999999998   999999999999999999653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=7.7e-37  Score=255.66  Aligned_cols=221  Identities=21%  Similarity=0.152  Sum_probs=130.3

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchH
Q 046373           75 VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTS  154 (364)
Q Consensus        75 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~  154 (364)
                      .|.+|.||||+|+..|+.+++++|++.+... ...++..+..|.||||+|+..|+.+++++|+++|+++. ..+..|.||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~   81 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGD-LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTP   81 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhcc-HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCH
Confidence            4555666666666666666666665554320 01244555566666666666666666666666665544 455556666


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhc
Q 046373          155 LYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFL  234 (364)
Q Consensus       155 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~  234 (364)
                      ||+|+..|+.+++++|++.|+++.....                      .......|.||||+|+..|+.+++++|+++
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  139 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSI----------------------LKATNYNGHTCLHLASIHGYLGIVELLVSL  139 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCG----------------------GGCCCTTCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHH----------------------hhccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            6666666666666666666654321110                      111223466677777777777777777777


Q ss_pred             CCcccccccC-CCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCccc--
Q 046373          235 DPKCYELVDH-RGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYG--  311 (364)
Q Consensus       235 ~~~~~~~~d~-~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~--  311 (364)
                      |++ ++..+. .|+||||+|+..|+.+++++|+++   |++++.+|..|.||||+|+..++  ...+.+|+++|++..  
T Consensus       140 g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~--~~~~~~Ll~~ga~~~~~  213 (236)
T 1ikn_D          140 GAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKC---GADVNRVTYQGYSPYQLTWGRPS--TRIQQQLGQLTLENLQM  213 (236)
T ss_dssp             TCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT---TCCSCCCCTTCCCGGGGCTTSSC--HHHHHHHHTTSCGGGSS
T ss_pred             CCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCcccCCCCCHHHHHHccCc--hHHHHHHHHcchhhhhc
Confidence            666 355555 677777777777777777777776   66677777777777777777776  455555566666543  


Q ss_pred             ccccCCCchhHHhh
Q 046373          312 AVNKQNVSVTDVLI  325 (364)
Q Consensus       312 ~~n~~g~t~l~~a~  325 (364)
                      ..+..|.|+++.+.
T Consensus       214 ~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          214 LPESEDEESYDTES  227 (236)
T ss_dssp             CCCCCTTTCCCCC-
T ss_pred             CCccchHHHHhhhc
Confidence            66666777766653

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=7.7e-36  Score=256.40  Aligned_cols=201  Identities=16%  Similarity=0.143  Sum_probs=181.4

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcC
Q 046373           71 LLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKY  150 (364)
Q Consensus        71 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~  150 (364)
                      +++..|..|.||||+|+..|+.+++++|++++++     ++..  +|.||||+|+..|+.+++++|+++|++++ ..+..
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~   94 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-----KNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDS-QFDDK   94 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-----GSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTT-CCCTT
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-----CCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCC
Confidence            4788999999999999999999999999999976     4444  59999999999999999999999999976 67888


Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCC-chHHHHHHhcCCHHHHH
Q 046373          151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRK-MTALHLAAGQGHARTVE  229 (364)
Q Consensus       151 ~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~t~L~~a~~~~~~~~~~  229 (364)
                      |.||||+|+..|+.+++++|+++|++++..+.                            .| .||||.|+..|+.++++
T Consensus        95 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~----------------------------~g~~t~L~~A~~~~~~~~v~  146 (285)
T 3kea_A           95 GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK----------------------------TGWKTSFYHAVMLNDVSIVS  146 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS----------------------------SGGGSHHHHHHHTTCHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCccCC----------------------------CCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999999999988765444                            45 68899999999999999


Q ss_pred             HHHhcCCcccccccC-CCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcH-HHHHHhcCCcceeehhhhcccC
Q 046373          230 TILFLDPKCYELVDH-RGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTP-LHVLAAIRPKEFFKIKVRYDAG  307 (364)
Q Consensus       230 ~Ll~~~~~~~~~~d~-~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~-L~~A~~~~~~~~~~~~ll~~~~  307 (364)
                      +|++++++.   .+. .|+||||+|+..|+.+++++|+++   |++++.+|..|.|| ||+|+..++  ...+.+|+++|
T Consensus       147 ~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t~~L~~A~~~~~--~~~v~~Ll~~g  218 (285)
T 3kea_A          147 YFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDY---MTSTNTNNSLLFIPDIKLAIDNKD--IEMLQALFKYD  218 (285)
T ss_dssp             HHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHHHH---HHHTCTTCCCBCCTTHHHHHHHTC--HHHHHHHTTSC
T ss_pred             HHHhCCCcc---ccccCCccHHHHHHHcChHHHHHHHHHc---CCCCCcccCCCCChHHHHHHHcCC--HHHHHHHHHcC
Confidence            999999875   233 899999999999999999999998   99999999999998 999999999  77778888999


Q ss_pred             Cccccccc
Q 046373          308 GNYGAVNK  315 (364)
Q Consensus       308 ~~~~~~n~  315 (364)
                      ++++.+|.
T Consensus       219 ad~~~~~~  226 (285)
T 3kea_A          219 INIYSANL  226 (285)
T ss_dssp             BCSTTTTG
T ss_pred             CCCCCCCh
Confidence            99988874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.8e-36  Score=253.47  Aligned_cols=221  Identities=20%  Similarity=0.146  Sum_probs=187.3

Q ss_pred             hhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCC
Q 046373           35 LTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTN  114 (364)
Q Consensus        35 ~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  114 (364)
                      ..+.+|.||||+|  +..|+.+++++|++.....+.+++..+..|.||||+|+..|+.+++++|+++|++     ++..+
T Consensus         3 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~   75 (236)
T 1ikn_D            3 QLTEDGDSFLHLA--IIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-----PELRD   75 (236)
T ss_dssp             ----CCCCTTHHH--HHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-----SCCCC
T ss_pred             cCCCCCCchhHHH--HHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCcC
Confidence            3566999999999  9999999999999875555567899999999999999999999999999999876     78889


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCC-----CCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHH
Q 046373          115 NEKNTALHEAVCHGNVQVVKILTKQDPDY-----PYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALH  189 (364)
Q Consensus       115 ~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~-----~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~  189 (364)
                      ..|.||||+|+..|+.+++++|++.+.+.     ....+..|.||||+|+..|+.+++++|++.|++++..+.       
T Consensus        76 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-------  148 (236)
T 1ikn_D           76 FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP-------  148 (236)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-------
Confidence            99999999999999999999999998642     345677899999999999999999999999999875543       


Q ss_pred             HHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCc
Q 046373          190 AAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNP  269 (364)
Q Consensus       190 ~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~  269 (364)
                                          ..|.||||+|+..|+.+++++|+++|++ ++..|..|+||||+|+..++.+++++|+++ 
T Consensus       149 --------------------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~-  206 (236)
T 1ikn_D          149 --------------------CNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-  206 (236)
T ss_dssp             --------------------TTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT-
T ss_pred             --------------------CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHc-
Confidence                                1577888899999999999999999998 588999999999999999999999999998 


Q ss_pred             ccccccc--cCCCCCCcHHHHHHhcC
Q 046373          270 LARSLIY--EGDNNGNTPLHVLAAIR  293 (364)
Q Consensus       270 ~~~~~i~--~~d~~g~t~L~~A~~~~  293 (364)
                        |++..  .++..|.||.+.+....
T Consensus       207 --ga~~~~~~~~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          207 --TLENLQMLPESEDEESYDTESEFT  230 (236)
T ss_dssp             --SCGGGSSCCCCCTTTCCCCC----
T ss_pred             --chhhhhcCCccchHHHHhhhcccc
Confidence              66555  77888999887665543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=5.4e-36  Score=262.39  Aligned_cols=260  Identities=14%  Similarity=0.075  Sum_probs=193.0

Q ss_pred             ccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhc-----
Q 046373           38 QTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRM-----  112 (364)
Q Consensus        38 ~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-----  112 (364)
                      ....+|+|..      ..+++++|++.    +.+++..+..|.|+++     |+.++|++|+++|.++....+..     
T Consensus        21 ~~~~~~~~~~------~~dlv~~ll~~----ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~   85 (327)
T 1sw6_A           21 DRTAGPIITF------THDLTSDFLSS----PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNND   85 (327)
T ss_dssp             ----CCEEEC------CTTCCCSTTTS----SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------
T ss_pred             cccccchhhh------cCchHHHHhhC----CcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcc
Confidence            3556666654      56788888875    8899999999999987     89999999999997642211100     


Q ss_pred             -------CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 046373          113 -------TNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK  185 (364)
Q Consensus       113 -------~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  185 (364)
                             ......+..|.|+..+..+++++|++.|.+++...+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~  165 (327)
T 1sw6_A           86 SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE  165 (327)
T ss_dssp             ------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCC
T ss_pred             cccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence                   1111223357778778889999999999998754888999999999999999999999999999999999999


Q ss_pred             ChHHHHHHhhh----------hhcchhhhhhhccCCCchHHHHHHh----cCCHHHHHHHHhc-----------------
Q 046373          186 TALHAAAMHFY----------FENDQTAADIADKDRKMTALHLAAG----QGHARTVETILFL-----------------  234 (364)
Q Consensus       186 ~~l~~a~~~~~----------~~~~~~~~~~~~~~~~~t~L~~a~~----~~~~~~~~~Ll~~-----------------  234 (364)
                      ||||+|+....          ++..... ....+..|.||||+|+.    .|+.+++++|++.                 
T Consensus       166 TpLh~A~~~g~~~~~~~~~~ll~~~~~~-~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~  244 (327)
T 1sw6_A          166 SCLVKAVKSVNNYDSGTFEALLDYLYPC-LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT  244 (327)
T ss_dssp             CHHHHHHHSSHHHHTTCHHHHHHHHGGG-GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-
T ss_pred             CHHHHHHHhcccccHHHHHHHHHhhhcc-ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhh
Confidence            99999998532          2222111 22234689999999999    9999999999987                 


Q ss_pred             ---CCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCccc
Q 046373          235 ---DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYG  311 (364)
Q Consensus       235 ---~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~  311 (364)
                         +.+ ++..+..|+||||+|+.      +++|++.     +++.+|..|+||||+|++.|+  ..++.+|+++|++++
T Consensus       245 ~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~-----~~n~~d~~G~TpLh~A~~~g~--~~~v~~Ll~~Gad~~  310 (327)
T 1sw6_A          245 NEKESK-PNDKNGERKDSILENLD------LKWIIAN-----MLNAQDSNGDTCLNIAARLGN--ISIVDALLDYGADPF  310 (327)
T ss_dssp             ----------------CHHHHHCS------HHHHHHH-----TTTCCCTTSCCHHHHHHHHCC--HHHHHHHHHTTCCTT
T ss_pred             hcccCC-cccccccCCChhHHHHH------HHHHHHh-----CCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHcCCCCc
Confidence               566 57789999999999986      7888874     589999999999999999999  677777889999999


Q ss_pred             ccccCCCchhHHhhhc
Q 046373          312 AVNKQNVSVTDVLIYG  327 (364)
Q Consensus       312 ~~n~~g~t~l~~a~~~  327 (364)
                      .+|..|+||||+|+..
T Consensus       311 ~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          311 IANKSGLRPVDFGAGL  326 (327)
T ss_dssp             CCCTTSCCGGGGTCC-
T ss_pred             ccCCCCCCHHHHHHhc
Confidence            9999999999999754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=3.4e-34  Score=244.97  Aligned_cols=220  Identities=20%  Similarity=0.201  Sum_probs=168.8

Q ss_pred             HhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCcccc----ccCCCCCcHHHHHHHc---CCHHHHHHHHHHhhHH
Q 046373           33 SLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLL----QVNAKGDTPLHLAAKF---GHSNIVSFLIERAKLA  105 (364)
Q Consensus        33 ~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~  105 (364)
                      ....+..|.||||+|  ++.|+.++++.|++.....+..++    ..|..|.||||+|+..   |+.+++++|++.++..
T Consensus         6 ~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDA--VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             -----CCCHHHHHHH--HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             CCCCCcccchHHHHH--HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            345667999999999  999999999999987655555554    4578999999999987   9999999999998752


Q ss_pred             Hh--Hhhh----cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCc--------------CCchHHHHHHhcCCHH
Q 046373          106 AW--QMMR----MTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENK--------------YGKTSLYMAAEGRYSE  165 (364)
Q Consensus       106 ~~--~~~~----~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~--------------~~~t~l~~A~~~~~~~  165 (364)
                      ..  ..++    ..+..|.||||+|+..|+.+++++|+++|++++ ..+.              .|.||||+|+..|+.+
T Consensus        84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  162 (273)
T 2pnn_A           84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA  162 (273)
T ss_dssp             TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred             cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence            11  1122    256789999999999999999999999999976 4443              7999999999999999


Q ss_pred             HHHHHHH---cCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCC---------HHHHHHHHh
Q 046373          166 MVIELLE---NCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGH---------ARTVETILF  233 (364)
Q Consensus       166 ~v~~Ll~---~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~---------~~~~~~Ll~  233 (364)
                      ++++|++   .|++++.++..|.||||+|+                            ..|+         .+++++|++
T Consensus       163 ~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~----------------------------~~~~~~~~~~~~~~~~v~~Ll~  214 (273)
T 2pnn_A          163 IVKFLLQNSWQPADISARDSVGNTVLHALV----------------------------EVADNTVDNTKFVTSMYNEILI  214 (273)
T ss_dssp             HHHHHHHCSSCCCCTTCCCTTSCCHHHHHH----------------------------HHCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCCceeeCCCCCcHHHHHH----------------------------HccCcchhHHHHHHHHHHHHHH
Confidence            9999999   99999988776655555554                            4444         689999999


Q ss_pred             cCCccc------ccccCCCCcHHHHHHHcCCHHHHHHHHhCccccc-ccccCCCCCCcHH
Q 046373          234 LDPKCY------ELVDHRGWNFLHYAMVSFKLHELKILLKNPLARS-LIYEGDNNGNTPL  286 (364)
Q Consensus       234 ~~~~~~------~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~-~i~~~d~~g~t~L  286 (364)
                      +|++..      +.+|..|+||||+|+..|+.+++++|+++   |+ +.......+.+|-
T Consensus       215 ~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~---ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          215 LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR---EIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH---HTC-------------
T ss_pred             hhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC---CCCCchhhhhhhhhcc
Confidence            998842      25789999999999999999999999998   66 6666666666554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.5e-34  Score=243.38  Aligned_cols=199  Identities=21%  Similarity=0.177  Sum_probs=167.1

Q ss_pred             cCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccc----cCCCCCcHHHHHHHc---CCHHHHHHHHHHhhHHHhHh--
Q 046373           39 TKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQ----VNAKGDTPLHLAAKF---GHSNIVSFLIERAKLAAWQM--  109 (364)
Q Consensus        39 ~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~--  109 (364)
                      .|.||||+|  +..|+.+.++.+++.+...+.+++.    .|..|.||||+|+..   |+.+++++|++.++......  
T Consensus         1 ~G~t~L~~A--~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSV--VSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHHH--HHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            478999999  9999999887777665555788887    899999999999999   99999999999997631100  


Q ss_pred             ----hhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcC-------------CchHHHHHHhcCCHHHHHHHHH
Q 046373          110 ----MRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKY-------------GKTSLYMAAEGRYSEMVIELLE  172 (364)
Q Consensus       110 ----~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~-------------~~t~l~~A~~~~~~~~v~~Ll~  172 (364)
                          ....+..|.||||+|+..|+.+++++|+++|++++ ..+..             |.||||+|+..|+.+++++|++
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  157 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE  157 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                01234679999999999999999999999999976 44443             9999999999999999999999


Q ss_pred             ---cCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHh--cCCHH-------HHHHHHhcCCccc-
Q 046373          173 ---NCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAG--QGHAR-------TVETILFLDPKCY-  239 (364)
Q Consensus       173 ---~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~--~~~~~-------~~~~Ll~~~~~~~-  239 (364)
                         .|++++.++..|.|||                            |+|+.  .++.+       ++++|+++|+++. 
T Consensus       158 ~~~~ga~~n~~d~~g~TpL----------------------------h~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  209 (256)
T 2etb_A          158 NPHQPASLEATDSLGNTVL----------------------------HALVMIADNSPENSALVIHMYDGLLQMGARLCP  209 (256)
T ss_dssp             CSSCCCCTTCCCTTSCCHH----------------------------HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             ccccCCCcCccCCCCCCHH----------------------------HHHHHcccCCchhhHHHHHHHHHHHHcCCCccc
Confidence               9999988777555555                            55554  55666       9999999998842 


Q ss_pred             -----ccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          240 -----ELVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       240 -----~~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                           +.+|..|+||||+|+..|+.+++++|+++
T Consensus       210 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  243 (256)
T 2etb_A          210 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR  243 (256)
T ss_dssp             TCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence                 77899999999999999999999999997

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.4e-34  Score=247.36  Aligned_cols=233  Identities=15%  Similarity=0.044  Sum_probs=174.7

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhh----cCCCCCCcHHHHHHHc---CCHHHHHHHHhcCC
Q 046373           69 PSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMR----MTNNEKNTALHEAVCH---GNVQVVKILTKQDP  141 (364)
Q Consensus        69 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~~~g~t~l~~a~~~---~~~e~v~~Ll~~~~  141 (364)
                      ++..+..|..|.||||.|+..|+.++|+.|++.+..... .++    ..+..|.||||+|+..   |+.+++++|++.|+
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga   81 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKK-RLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR   81 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCC-CTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhccc-ccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence            344566788999999999999999999999987643111 111    3478999999999987   99999999999875


Q ss_pred             CCC----------CCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCC
Q 046373          142 DYP----------YSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDR  211 (364)
Q Consensus       142 ~~~----------~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~  211 (364)
                      +..          ...+..|.||||+|+..|+.+++++|+++|++++..+..+..           ..   .........
T Consensus        82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~-----------~~---~~~~~~~~~  147 (273)
T 2pnn_A           82 KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF-----------KK---TKGRPGFYF  147 (273)
T ss_dssp             HTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGG-----------SS---CSSSCCCCS
T ss_pred             cccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccc-----------cc---ccccccccC
Confidence            421          124568999999999999999999999999999887764310           00   001112236


Q ss_pred             CchHHHHHHhcCCHHHHHHHHh---cCCcccccccCCCCcHHHHHHHcCC---------HHHHHHHHhCcccccccc---
Q 046373          212 KMTALHLAAGQGHARTVETILF---LDPKCYELVDHRGWNFLHYAMVSFK---------LHELKILLKNPLARSLIY---  276 (364)
Q Consensus       212 ~~t~L~~a~~~~~~~~~~~Ll~---~~~~~~~~~d~~g~t~l~~a~~~~~---------~~~~~~ll~~~~~~~~i~---  276 (364)
                      |.||||+|+..|+.+++++|++   +|++ ++.+|..|+||||+|+..++         .+++++|++.   |++++   
T Consensus       148 g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~---ga~~n~~~  223 (273)
T 2pnn_A          148 GELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL---GAKLHPTL  223 (273)
T ss_dssp             CBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---HHHHCTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh---hhhccccc
Confidence            9999999999999999999999   8888 68899999999999999988         7899999997   88886   


Q ss_pred             ----cCCCCCCcHHHHHHhcCCcceeehhhhcccCC-cccccccCCCchhH
Q 046373          277 ----EGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGG-NYGAVNKQNVSVTD  322 (364)
Q Consensus       277 ----~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~-~~~~~n~~g~t~l~  322 (364)
                          .+|..|.||||+|++.|+  ..++.+|+++|+ ++......+.+|.+
T Consensus       224 ~~~~~~d~~g~TpL~~A~~~g~--~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          224 KLEEITNRKGLTPLALAASSGK--IGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             CGGGCCCTTSCCHHHHHHHTTC--HHHHHHHHHHHTC--------------
T ss_pred             ccccccCCCCCCHHHHHHHhCh--HHHHHHHHHCCCCCchhhhhhhhhccC
Confidence                489999999999999999  777778888999 77777777766644

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4.7e-33  Score=226.79  Aligned_cols=181  Identities=19%  Similarity=0.188  Sum_probs=96.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHH
Q 046373           78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYM  157 (364)
Q Consensus        78 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~  157 (364)
                      .+.||||.|+..|+.+.++.|+..+..    +++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~   78 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTY----QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNSISDSPYLY   78 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTC----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHH
Confidence            345555555555555555555554431    144455555555555555555555555555555543 344455555555


Q ss_pred             HHhcCCHHHHHHHHH-cCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCC
Q 046373          158 AAEGRYSEMVIELLE-NCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDP  236 (364)
Q Consensus       158 A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~  236 (364)
                      |+..|+.+++++|++ .+++++..+.                            .|.||||.|+..|+.+++++|++++.
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~----------------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~  130 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNR----------------------------YGGNALIPAAEKGHIDNVKLLLEDGR  130 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCT----------------------------TSCCSHHHHHHTTCHHHHHHHHHHCC
T ss_pred             HHHcCCHHHHHHHHhccCcccccccC----------------------------CCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            555555555555552 3334333222                            34444455555555555555555552


Q ss_pred             cccccccCCCCcHHHHHHHcCC-----HHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCC
Q 046373          237 KCYELVDHRGWNFLHYAMVSFK-----LHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRP  294 (364)
Q Consensus       237 ~~~~~~d~~g~t~l~~a~~~~~-----~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~  294 (364)
                      ..++..|..|+||||+|+..++     .+++++|+++   |++++.+|..|.||||+|++.|+
T Consensus       131 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~  190 (201)
T 3hra_A          131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN---GADQSIKDNSGRTAMDYANQKGY  190 (201)
T ss_dssp             CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCC
Confidence            2245555555555555555555     5555555555   55555555555555555555555

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4.9e-33  Score=226.65  Aligned_cols=192  Identities=22%  Similarity=0.228  Sum_probs=164.6

Q ss_pred             ccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCC
Q 046373           38 QTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEK  117 (364)
Q Consensus        38 ~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g  117 (364)
                      ..+.||||.|  +..|+.+.++.+++   ..+.+++..|..|.||||+|+..|+.+++++|++++++     ++..+..|
T Consensus         3 ~~~~~~L~~A--~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g   72 (201)
T 3hra_A            3 TYEVGALLEA--ANQRDTKKVKEILQ---DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-----INLQNSIS   72 (201)
T ss_dssp             CCCTTHHHHH--HHTTCHHHHHHHHT---CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTS
T ss_pred             cccccHHHHH--HHhccHHHHHHHHH---cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCC
Confidence            3688999999  99999888888876   45557888999999999999999999999999999876     67788899


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCChHHHHHHhhh
Q 046373          118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENC-TSVSHEGPNGKTALHAAAMHFY  196 (364)
Q Consensus       118 ~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~~  196 (364)
                      .||||+|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.| ++++.++..             
T Consensus        73 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~-------------  139 (201)
T 3hra_A           73 DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF-------------  139 (201)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTT-------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC-------------
Confidence            999999999999999999996655444577888999999999999999999999998 888776664             


Q ss_pred             hhcchhhhhhhccCCCchHHHHHHhcCC-----HHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          197 FENDQTAADIADKDRKMTALHLAAGQGH-----ARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       197 ~~~~~~~~~~~~~~~~~t~L~~a~~~~~-----~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                                     |.||||.|+..++     .+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++
T Consensus       140 ---------------g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          140 ---------------GYTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             ---------------SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             ---------------CCCHHHHHHHhccchhhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence                           4555556665565     8999999999988 578899999999999999999999999986

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-35  Score=259.07  Aligned_cols=227  Identities=14%  Similarity=0.078  Sum_probs=170.0

Q ss_pred             hcCChHHhhhccCChhHHHhh-----------------hhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccc-cC
Q 046373           15 AAGDAETFKRNTTSDEIESLL-----------------TAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQ-VN   76 (364)
Q Consensus        15 ~~g~~~~v~~ll~~~~~~~~~-----------------~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~   76 (364)
                      ..|++++|++|++++ +++..                 ......+.+|.|  +..+..+++++|++    .+.+++. .|
T Consensus        56 ~~g~~~~v~~Ll~~g-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~l~~----~g~dvn~~~d  128 (327)
T 1sw6_A           56 DNEQKMKLEAFLQRL-LFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS--FDSLLQEVNDAFPN----TQLNLNIPVD  128 (327)
T ss_dssp             CHHHHHHHHHHHHHH-HC-------------------------------C--HHHHHHHHHHHCTT----SCCCSCSCCS
T ss_pred             cCchhHHHHHHHHhc-cCCccccchHhhhcccccccccccCCccchhHHH--HHhhHHHHHHHHHh----cCCCcccccC
Confidence            339999999999987 43321                 011112234556  55555555554444    4788999 89


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCC---HHHHHHHHhcCCCCCCCCCcCCch
Q 046373           77 AKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGN---VQVVKILTKQDPDYPYSENKYGKT  153 (364)
Q Consensus        77 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~---~e~v~~Ll~~~~~~~~~~~~~~~t  153 (364)
                      ..|+||||+|+..|+.++|++|+++|++     ++..+..|.||||+|+..|+   .++++.|++.+.......+..|.|
T Consensus       129 ~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-----~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~t  203 (327)
T 1sw6_A          129 EHGNTPLHWLTSIANLELVKHLVKHGSN-----RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRT  203 (327)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCC
Confidence            9999999999999999999999999976     78899999999999999998   677777777763334478889999


Q ss_pred             HHHHHHh----cCCHHHHHHHHHc--------------------CCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhcc
Q 046373          154 SLYMAAE----GRYSEMVIELLEN--------------------CTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADK  209 (364)
Q Consensus       154 ~l~~A~~----~~~~~~v~~Ll~~--------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~  209 (364)
                      |||+|+.    .|+.+++++|++.                    |++++..+.                           
T Consensus       204 pLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~---------------------------  256 (327)
T 1sw6_A          204 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG---------------------------  256 (327)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------------------------------
T ss_pred             HHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccc---------------------------
Confidence            9999999    8999999999987                    555554444                           


Q ss_pred             CCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHH
Q 046373          210 DRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVL  289 (364)
Q Consensus       210 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A  289 (364)
                       .|.||||.|+.      +++|++++   ++.+|..|+||||+|+..|+.+++++|+++   |++++.+|..|.||||+|
T Consensus       257 -~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---Gad~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          257 -ERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGLRPVDFG  323 (327)
T ss_dssp             ----CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTSCCGGGGT
T ss_pred             -cCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHH
Confidence             45566666664      88889883   577899999999999999999999999998   999999999999999999


Q ss_pred             HhcC
Q 046373          290 AAIR  293 (364)
Q Consensus       290 ~~~~  293 (364)
                      ++.|
T Consensus       324 ~~~g  327 (327)
T 1sw6_A          324 AGLE  327 (327)
T ss_dssp             CC--
T ss_pred             HhcC
Confidence            8764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=8.9e-34  Score=240.02  Aligned_cols=207  Identities=20%  Similarity=0.093  Sum_probs=174.8

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHHhhHHHhHhhhc----CCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCCCCC
Q 046373           78 KGDTPLHLAAKFGHSN----IVSFLIERAKLAAWQMMRM----TNNEKNTALHEAVCH---GNVQVVKILTKQDPDYPYS  146 (364)
Q Consensus        78 ~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~----~~~~g~t~l~~a~~~---~~~e~v~~Ll~~~~~~~~~  146 (364)
                      .|+||||.|+..|+.+    ++++|++.+.+     ++.    .+..|.||||+|+..   |+.+++++|++.|++....
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-----i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~   75 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-----LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNP   75 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-----TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCS
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-----cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccch
Confidence            3789999999999997    56677777765     565    789999999999999   9999999999998765422


Q ss_pred             ----------CCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHH
Q 046373          147 ----------ENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTAL  216 (364)
Q Consensus       147 ----------~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L  216 (364)
                                .+..|.||||+|+..|+.+++++|+++|++++..+..+.++.               ........|.|||
T Consensus        76 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~---------------~~~~~~~~g~tpL  140 (256)
T 2etb_A           76 KPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQK---------------HQGTCFYFGELPL  140 (256)
T ss_dssp             SCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSC---------------CSSSCCCSCSSHH
T ss_pred             hhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccc---------------cccccccCCCCHH
Confidence                      246799999999999999999999999999998877543210               0111122499999


Q ss_pred             HHHHhcCCHHHHHHHHh---cCCcccccccCCCCcHHHHHHH--cCCHH-------HHHHHHhCccccccc-------cc
Q 046373          217 HLAAGQGHARTVETILF---LDPKCYELVDHRGWNFLHYAMV--SFKLH-------ELKILLKNPLARSLI-------YE  277 (364)
Q Consensus       217 ~~a~~~~~~~~~~~Ll~---~~~~~~~~~d~~g~t~l~~a~~--~~~~~-------~~~~ll~~~~~~~~i-------~~  277 (364)
                      |+|+..|+.+++++|++   +|++ ++.+|..|+||||+|+.  .++.+       ++++|++.   |+++       +.
T Consensus       141 ~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~---ga~~~~~~~~~~~  216 (256)
T 2etb_A          141 SLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM---GARLCPTVQLEEI  216 (256)
T ss_dssp             HHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---HHHHSTTCCGGGC
T ss_pred             HHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc---CCCcccccccccc
Confidence            99999999999999999   8888 68899999999999999  78888       99999998   8999       99


Q ss_pred             CCCCCCcHHHHHHhcCCcceeehhhhcccCCcc
Q 046373          278 GDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNY  310 (364)
Q Consensus       278 ~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~  310 (364)
                      +|..|.||||+|+..|+  ...+.+|+++|++.
T Consensus       217 ~d~~g~tpL~~A~~~g~--~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          217 SNHQGLTPLKLAAKEGK--IEIFRHILQREFSG  247 (256)
T ss_dssp             CCTTSCCHHHHHHHTTC--HHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHhCC--HHHHHHHHhCCCCC
Confidence            99999999999999999  66677777887764

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=8.1e-34  Score=223.39  Aligned_cols=162  Identities=24%  Similarity=0.324  Sum_probs=147.6

Q ss_pred             CCChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHH
Q 046373            5 SIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLH   84 (364)
Q Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~   84 (364)
                      ++.++|+.||+.|++++|++|++.| .+.+..+..|.||||+|  +..++.++++++++.    +.+++..|..|+||||
T Consensus         3 dlg~~L~~Aa~~G~~~~v~~Ll~~G-advn~~d~~g~t~l~~a--~~~~~~~~~~~ll~~----gad~~~~d~~g~TpLh   75 (169)
T 4gpm_A            3 ELGKRLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHA--AENGHKEVVKLLISK----GADVNAKDSDGRTPLH   75 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHhc----ccchhhhccCCCCHHH
Confidence            3457899999999999999999998 87888888999999999  999999999999986    8889999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCH
Q 046373           85 LAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYS  164 (364)
Q Consensus        85 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~  164 (364)
                      +|+..|+.++|++|+++|++     ++.+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.|||++|+..|+.
T Consensus        76 ~A~~~g~~~~v~~Ll~~gad-----vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~g~~  149 (169)
T 4gpm_A           76 HAAENGHKEVVKLLISKGAD-----VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDLAREHGNE  149 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHCcCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCH
Confidence            99999999999999999976     78899999999999999999999999999999976 7888999999999999999


Q ss_pred             HHHHHHHHcCCCCCC
Q 046373          165 EMVIELLENCTSVSH  179 (364)
Q Consensus       165 ~~v~~Ll~~~~~~~~  179 (364)
                      +++++|+++|++++.
T Consensus       150 ~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          150 EVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHHHHTC------
T ss_pred             HHHHHHHHCCCCcCC
Confidence            999999999998764

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.5e-32  Score=212.92  Aligned_cols=152  Identities=28%  Similarity=0.314  Sum_probs=81.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhc
Q 046373           82 PLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG  161 (364)
Q Consensus        82 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~  161 (364)
                      +|+.|+..|+.++|++|+++|++     ++..|..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gad-----vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGAD-----VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHc
Confidence            45555555555555555555543     44555555555555555555555555555555543 4444555555555555


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCccccc
Q 046373          162 RYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYEL  241 (364)
Q Consensus       162 ~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~  241 (364)
                      |+.+++++|++.|++++.++.                            .|.||||+|+..|+.+++++|+++|++ ++.
T Consensus        81 g~~~~v~~Ll~~gadvn~~d~----------------------------~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~  131 (169)
T 4gpm_A           81 GHKEVVKLLISKGADVNAKDS----------------------------DGRTPLHHAAENGHKEVVKLLISKGAD-VNT  131 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTC
T ss_pred             CCHHHHHHHHHCcCCCCCCCC----------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-ccc
Confidence            555555555555555544333                            234444444455555555555555555 344


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          242 VDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       242 ~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                      +|..|+||||+|+..|+.+++++|+++
T Consensus       132 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~  158 (169)
T 4gpm_A          132 SDSDGRTPLDLAREHGNEEVVKLLEKQ  158 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            555555555555555555555555554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.2e-32  Score=233.61  Aligned_cols=200  Identities=20%  Similarity=0.225  Sum_probs=166.6

Q ss_pred             ccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccC----CCCCcHHHHHH---HcCCHHHHHHHHHHhhHHHh---
Q 046373           38 QTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVN----AKGDTPLHLAA---KFGHSNIVSFLIERAKLAAW---  107 (364)
Q Consensus        38 ~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~~g~t~L~~A~---~~~~~~~v~~Ll~~~~~~~~---  107 (364)
                      ..+.++||.|  ++.|+.+.++.|++.+...+..++..+    ..|.||||+|+   ..|+.+++++|++.++.+..   
T Consensus         3 ~~~~~~L~~A--~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            3 VFNRPILFDI--VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             cchHHHHHHH--HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            4678999999  999999988888886555566666555    67999999999   67999999999999875311   


Q ss_pred             ---HhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC--------------cCCchHHHHHHhcCCHHHHHHH
Q 046373          108 ---QMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSEN--------------KYGKTSLYMAAEGRYSEMVIEL  170 (364)
Q Consensus       108 ---~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~--------------~~~~t~l~~A~~~~~~~~v~~L  170 (364)
                         ......+..|.||||+|+..|+.+++++|+++|++++ ..+              ..|.||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  159 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL  159 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence               1133445589999999999999999999999999977 444              5799999999999999999999


Q ss_pred             HH---cCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCC---------HHHHHHHHhcCCcc
Q 046373          171 LE---NCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGH---------ARTVETILFLDPKC  238 (364)
Q Consensus       171 l~---~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~---------~~~~~~Ll~~~~~~  238 (364)
                      ++   .|++++.++..|.||||+|+                            ..++         .+++++|+++|+++
T Consensus       160 l~~~~~ga~~~~~d~~g~TpLh~A~----------------------------~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          160 TENGHKQADLRRQDSRGNTVLHALV----------------------------AIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             HHCSSCCCCTTCCCTTSCCHHHHHH----------------------------HHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccCCCCcccCCCCCcHHHHHH----------------------------HhccCchhHHHHHHHHHHHHHHhCccc
Confidence            99   89999988876655555554                            3333         58999999999874


Q ss_pred             c------ccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          239 Y------ELVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       239 ~------~~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                      .      +..|..|+||||+|+..|+.+++++|+++
T Consensus       212 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  247 (260)
T 3jxi_A          212 FPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR  247 (260)
T ss_dssp             CTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            2      56899999999999999999999999998

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=4.5e-32  Score=230.09  Aligned_cols=210  Identities=18%  Similarity=0.081  Sum_probs=169.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH----HhhHHHhHhhhcC----CCCCCcHHHHHH---HcCCHHHHHHHHhcCCCC-
Q 046373           76 NAKGDTPLHLAAKFGHSNIVSFLIE----RAKLAAWQMMRMT----NNEKNTALHEAV---CHGNVQVVKILTKQDPDY-  143 (364)
Q Consensus        76 ~~~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~----~~~g~t~l~~a~---~~~~~e~v~~Ll~~~~~~-  143 (364)
                      +..++|+||.|+..|+.+.++.|++    .+..     ++..    +..|.||||+|+   ..|+.+++++|++.+.+. 
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-----~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~   76 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-----LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTG   76 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-----TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-----cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccccc
Confidence            4568899999999999996555555    6654     3333    367999999999   679999999999987431 


Q ss_pred             ---------CCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCch
Q 046373          144 ---------PYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMT  214 (364)
Q Consensus       144 ---------~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t  214 (364)
                               ....+..|.||||+|+..|+.+++++|++.|++++..+..+...              ..........|.|
T Consensus        77 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~--------------~~~~~~~~~~g~t  142 (260)
T 3jxi_A           77 NMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ--------------PKDEGGYFYFGEL  142 (260)
T ss_dssp             CHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCS--------------SSCCCCSCCSCSS
T ss_pred             chHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccC--------------cccccccccCCCC
Confidence                     12345589999999999999999999999999998776422100              0000011146899


Q ss_pred             HHHHHHhcCCHHHHHHHHh---cCCcccccccCCCCcHHHHHHHcCC---------HHHHHHHHhCccccccc-------
Q 046373          215 ALHLAAGQGHARTVETILF---LDPKCYELVDHRGWNFLHYAMVSFK---------LHELKILLKNPLARSLI-------  275 (364)
Q Consensus       215 ~L~~a~~~~~~~~~~~Ll~---~~~~~~~~~d~~g~t~l~~a~~~~~---------~~~~~~ll~~~~~~~~i-------  275 (364)
                      |||+|+..|+.+++++|++   ++++ ++.+|..|+||||+|+..++         .+++++|++.   |+++       
T Consensus       143 pL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~---ga~~~~~~~~~  218 (260)
T 3jxi_A          143 PLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK---CAKLFPDTNLE  218 (260)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH---HHHHCTTCCGG
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh---Ccccccccchh
Confidence            9999999999999999999   8888 68899999999999999888         7899999997   8888       


Q ss_pred             ccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcc
Q 046373          276 YEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNY  310 (364)
Q Consensus       276 ~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~  310 (364)
                      +.+|..|.||||+|++.|+  ...+.+|+++|++.
T Consensus       219 ~~~d~~g~tpL~~A~~~g~--~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          219 ALLNNDGLSPLMMAAKTGK--IGIFQHIIRREIAD  251 (260)
T ss_dssp             GCCCTTSCCHHHHHHHTTC--HHHHHHHHHHHHHH
T ss_pred             hcccCCCCCHHHHHHHcCC--HHHHHHHHHhCCCc
Confidence            7799999999999999999  77777777888774

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=4.8e-30  Score=203.56  Aligned_cols=170  Identities=17%  Similarity=0.176  Sum_probs=118.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHH
Q 046373           79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMA  158 (364)
Q Consensus        79 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A  158 (364)
                      +.||||.|+..|+.+++++|++.+...    ++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   76 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNL----VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLA   76 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGG----GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCccc----ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHH
Confidence            357777888888888777777776542    56667777778888777777788887777777755 5666777788888


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcc
Q 046373          159 AEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKC  238 (364)
Q Consensus       159 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~  238 (364)
                      +..++.+++++|++.|++++..+.                            .|.||||+|+..|+.+++++|+++|++ 
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~~~~~~----------------------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-  127 (172)
T 3v30_A           77 STGGYTDIVGLLLERDVDINIYDW----------------------------NGGTPLLYAVRGNHVKCVEALLARGAD-  127 (172)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             HHCCCHHHHHHHHHcCCCCCCCCC----------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence            777777778877777777665444                            455666667777777777777777777 


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcH
Q 046373          239 YELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTP  285 (364)
Q Consensus       239 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~  285 (364)
                      ++.+|..|+||||+|+..++.+++++|+++   ++++..++..|.||
T Consensus       128 ~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~---~~~~~~~~~~~~~p  171 (172)
T 3v30_A          128 LTTEADSGYTPMDLAVALGYRKVQQVIENH---ILKLFQSNLVPADP  171 (172)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHH---HHHHSCC-------
T ss_pred             ccccCCCCCCHHHHHHHhCcHHHHHHHHHH---HHHHhcccCCCCCC
Confidence            466777777888888887777777777776   66666666666665

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=8.4e-30  Score=205.93  Aligned_cols=163  Identities=25%  Similarity=0.229  Sum_probs=134.1

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcC
Q 046373           71 LLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKY  150 (364)
Q Consensus        71 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~  150 (364)
                      ..+..|..|.||||+|+..|+.+++++|++.+++     ++..+..|.||||+|+..|+.+++++|+++++++. ..+..
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~  100 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-----LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFS  100 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTT
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-----cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCC
Confidence            3566788888888888888888888888888765     67778888888888888888888888888888765 66777


Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHH
Q 046373          151 GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVET  230 (364)
Q Consensus       151 ~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~  230 (364)
                      |.||||+|+..++.+++++|++.|++++.++.                            .|.||||+|+..|+.+++++
T Consensus       101 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------------------------~g~t~L~~A~~~~~~~~v~~  152 (192)
T 2rfm_A          101 GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL----------------------------EGETPLIVASKYGRSEIVKK  152 (192)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT----------------------------TCCCHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------------------------CCCCHHHHHHHcCCHHHHHH
Confidence            88888888888888888888888888776554                            46677777777888888888


Q ss_pred             HHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          231 ILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       231 Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                      |+++|++ ++.+|..|.||+|+|+..++.+++++|++.
T Consensus       153 Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          153 LLELGAD-ISARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             HHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHCCCC-CCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            8888887 577888888888888888888888888875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.8e-30  Score=221.83  Aligned_cols=191  Identities=21%  Similarity=0.180  Sum_probs=158.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHH
Q 046373           79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMA  158 (364)
Q Consensus        79 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A  158 (364)
                      ..+++|.|+..++.+.++.+++.+..   ..++..|..|.||||+|+..|+.+++++|++.|+......+..|.||||+|
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~---~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLD---YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHH---HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHh---hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence            45788889999999999998887754   336788899999999999999999999999998843457888899999999


Q ss_pred             H-----hcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHh
Q 046373          159 A-----EGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILF  233 (364)
Q Consensus       159 ~-----~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~  233 (364)
                      +     ..++.+++++|++.|...+..+.                            .|.||||+|+..|+.+++++|++
T Consensus       153 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~----------------------------~g~tpLh~A~~~g~~~~v~~Ll~  204 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLFRLGNINAKASQ----------------------------AGQTALMLAVSHGRVDVVKALLA  204 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHHHHSCTTCCCTT----------------------------TCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHcCCCccccCC----------------------------CCCCHHHHHHHcCCHHHHHHHHh
Confidence            8     66788999999998876554333                            57788888888899999999999


Q ss_pred             cCCcccccccCCCCcHHHHHHHcCCHHHHHHHHh-CcccccccccCCCCCCcHHHHHHhcCCcceeehhhhccc
Q 046373          234 LDPKCYELVDHRGWNFLHYAMVSFKLHELKILLK-NPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDA  306 (364)
Q Consensus       234 ~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~-~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~  306 (364)
                      +|++ ++..|..|+||||+|+..|+.+++++|++ .   +++++.+|..|.||||+|+..|+  ...+.+|+++
T Consensus       205 ~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~---gad~~~~d~~g~TpL~~A~~~g~--~~iv~~Ll~~  272 (276)
T 4hbd_A          205 CEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVP---SCDISLTDRDGSTALMVALDAGQ--SEIASMLYSR  272 (276)
T ss_dssp             TTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTST---TCCTTCCCTTSCCHHHHHHHHTC--HHHHHHHHHH
T ss_pred             CCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC---CCCCcCcCCCCCCHHHHHHHcCC--HHHHHHHHhc
Confidence            9988 57889999999999999999999999998 5   88899999999999999999999  4444444443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.2e-30  Score=205.51  Aligned_cols=170  Identities=19%  Similarity=0.135  Sum_probs=148.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhh
Q 046373          117 KNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFY  196 (364)
Q Consensus       117 g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  196 (364)
                      +.||||.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.|++++..+.              
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------------   67 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK--------------   67 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT--------------
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcc--------------
Confidence            468999999999999999999999886667888999999999999999999999999999876654              


Q ss_pred             hhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccc
Q 046373          197 FENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIY  276 (364)
Q Consensus       197 ~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~  276 (364)
                                    .+.||||.|+..|+.+++++|++++.+ ++..|..|+||||+|+..++.+++++|++.   +++++
T Consensus        68 --------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~  129 (172)
T 3v30_A           68 --------------ERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLAR---GADLT  129 (172)
T ss_dssp             --------------TCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTT
T ss_pred             --------------cCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCcc
Confidence                          567788888889999999999999998 588899999999999999999999999998   89999


Q ss_pred             cCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCch
Q 046373          277 EGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSV  320 (364)
Q Consensus       277 ~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~  320 (364)
                      .+|..|.||||+|+..++  ...+.+|+++|+++...|..|.||
T Consensus       130 ~~~~~g~t~l~~A~~~~~--~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          130 TEADSGYTPMDLAVALGY--RKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             CCCTTSCCHHHHHHHHTC--HHHHHHHHHHHHHHSCC-------
T ss_pred             ccCCCCCCHHHHHHHhCc--HHHHHHHHHHHHHHhcccCCCCCC
Confidence            999999999999999999  777788889999988889888887

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=2.4e-30  Score=220.98  Aligned_cols=193  Identities=17%  Similarity=0.165  Sum_probs=171.0

Q ss_pred             ccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCC
Q 046373           38 QTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEK  117 (364)
Q Consensus        38 ~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g  117 (364)
                      ....+++|.|  +..++.+.++.+++...  ...++..|..|.||||+|+..|+.+++++|++.++.    .++..+..|
T Consensus        74 ~~~~~~l~~a--~~~~~~~~~~~l~~~~~--~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~----~~~~~~~~g  145 (276)
T 4hbd_A           74 LACRSDAHPE--LVRRHLVTFRAMSARLL--DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVC----KVDKQNRAG  145 (276)
T ss_dssp             HHHSTTCCHH--HHHHHHHHHHHHCHHHH--HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCC----CTTCCCTTS
T ss_pred             HHhccCCCHH--HHHHHHHHHHHHHHHHH--hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC----cCCCCCCCC
Confidence            3567889999  99999999999887532  234788999999999999999999999999999972    278889999


Q ss_pred             CcHHHHHH-----HcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHH
Q 046373          118 NTALHEAV-----CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA  192 (364)
Q Consensus       118 ~t~l~~a~-----~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~  192 (364)
                      .||||+|+     ..++.+++++|++.|.... ..+..|.||||+|+..|+.+++++|++.|++++.++.          
T Consensus       146 ~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~----------  214 (276)
T 4hbd_A          146 YSPIMLTALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD----------  214 (276)
T ss_dssp             CCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------
T ss_pred             CCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC----------
Confidence            99999999     5688999999999997754 6778899999999999999999999999999987665          


Q ss_pred             HhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHh-cCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          193 MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILF-LDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~-~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                                        .|.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+..|+.+++++|+++
T Consensus       215 ------------------~G~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          215 ------------------DGSTALMCACEHGHKEIAGLLLAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             ------------------TSCCHHHHHHHHTCHHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             ------------------CCCCHHHHHHHCCCHHHHHHHHhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                              56777888888899999999999 7887 688999999999999999999999999986

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.5e-29  Score=204.50  Aligned_cols=162  Identities=19%  Similarity=0.143  Sum_probs=148.4

Q ss_pred             hhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcC
Q 046373           34 LLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMT  113 (364)
Q Consensus        34 ~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  113 (364)
                      ...+..|.||||+|  +..|+.+++++|++.    +.+++..+..|.||||+|+..|+.+++++|++.+++     ++..
T Consensus        29 n~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~   97 (192)
T 2rfm_A           29 NYRDSYNRTPLMVA--CMLGMENAIDKLVEN----FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-----VNTK   97 (192)
T ss_dssp             TCCCTTCCCHHHHH--HHHTCGGGHHHHHHH----HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-----TTCC
T ss_pred             hCcCCCCCCHHHHH--HHcCCHHHHHHHHHh----ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-----CCCC
Confidence            35677999999999  999999999999997    677888999999999999999999999999999876     7888


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHH
Q 046373          114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM  193 (364)
Q Consensus       114 ~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~  193 (364)
                      +..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++.           
T Consensus        98 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-----------  165 (192)
T 2rfm_A           98 DFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL-----------  165 (192)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT-----------
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-----------
Confidence            9999999999999999999999999999976 7788899999999999999999999999999876554           


Q ss_pred             hhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcC
Q 046373          194 HFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLD  235 (364)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~  235 (364)
                                       .|.|||++|+..|+.+++++|++++
T Consensus       166 -----------------~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          166 -----------------TGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             -----------------TSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----------------CCCCHHHHHHHhCcHHHHHHHHhcc
Confidence                             5778888899999999999999764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=2.6e-31  Score=220.30  Aligned_cols=197  Identities=15%  Similarity=0.011  Sum_probs=132.0

Q ss_pred             HHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCC
Q 046373           96 SFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCT  175 (364)
Q Consensus        96 ~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~  175 (364)
                      +.|+++++.+..  .+..+..+.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|++.|+
T Consensus         2 ~~ll~~~~~~~~--~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga   78 (229)
T 2vge_A            2 RSVLRKAGSPRK--ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLITAGA   78 (229)
T ss_dssp             --------CCCC--CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             eehhccCCCCcc--ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            455666554211  22334556677777777777777777777777655 566677788888888888888888888777


Q ss_pred             CCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCccccccc-CCCCcHHHHH-
Q 046373          176 SVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVD-HRGWNFLHYA-  253 (364)
Q Consensus       176 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d-~~g~t~l~~a-  253 (364)
                      +++..+.                            .|.||||+|+..|+.+++++|+++|+++ +..+ ..|+||||+| 
T Consensus        79 ~~n~~d~----------------------------~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~  129 (229)
T 2vge_A           79 NVNSPDS----------------------------HGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCD  129 (229)
T ss_dssp             CTTCCCT----------------------------TCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCC
T ss_pred             CCCCCCC----------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHH
Confidence            7765544                            4566666777777788888888877774 4454 5788888888 


Q ss_pred             -HHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCc--ccccccCCCchhHHhhhcccc
Q 046373          254 -MVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGN--YGAVNKQNVSVTDVLIYGSRE  330 (364)
Q Consensus       254 -~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~--~~~~n~~g~t~l~~a~~~~~~  330 (364)
                       +..++.+++++|++.   |++++.+|..|.||++.++....     ..+++..|++  ++.+|..|+||||+|+..+..
T Consensus       130 a~~~~~~~~v~~Ll~~---ga~~~~~~~~~~~~l~~~~~~~~-----~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~  201 (229)
T 2vge_A          130 PYREGYADCATYLADV---EQSMGLMNSGAVYALWDYSAEFG-----DELSFREGESVTVLRRDGPEETDWWWAALHGQE  201 (229)
T ss_dssp             TTSTTHHHHHHHHHHH---HHHTTTSGGGEEEESSCBCCSST-----TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEE
T ss_pred             HHhcChHHHHHHHHHc---CCCcccccCCchHHHHHHhhccc-----cccCccccccccccccCCCcccHHHHHHHcCCc
Confidence             778888888888876   77888888778888775444433     1345566776  667788888888888555444


Q ss_pred             ee
Q 046373          331 LT  332 (364)
Q Consensus       331 ~~  332 (364)
                      -.
T Consensus       202 ~~  203 (229)
T 2vge_A          202 GY  203 (229)
T ss_dssp             EE
T ss_pred             ce
Confidence            43

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=8.3e-29  Score=195.42  Aligned_cols=156  Identities=21%  Similarity=0.222  Sum_probs=118.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHH
Q 046373           78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYM  157 (364)
Q Consensus        78 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~  157 (364)
                      .|.||||.|+..|+.+++++|++.+.+     ++..+..|.||||+|+..|+.+++++|++.+++++ ..+..|.||||+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~   75 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-----INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSL   75 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-----cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCcHHHH
Confidence            467788888888888888888877754     66677778888888888888888888888777755 566677888888


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCc
Q 046373          158 AAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPK  237 (364)
Q Consensus       158 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~  237 (364)
                      |+..++.+++++|++.|++++..+.                            .|.||||.|+..|+.+++++|+++|++
T Consensus        76 A~~~~~~~~v~~Ll~~g~~~~~~~~----------------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~  127 (167)
T 3v31_A           76 ACSKGYTDIVKMLLDCGVDVNEYDW----------------------------NGGTPLLYAVHGNHVKCVKMLLESGAD  127 (167)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCHHHHHHHHHCCCCCCcCCC----------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            8888888888888888877765544                            456666677777778888888887777


Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          238 CYELVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       238 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                       ++..|..|+||+|+|+..|+.+++++|+++
T Consensus       128 -~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A          128 -PTIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             -TTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             -CCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence             466777788888888888888888888775

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=2.6e-29  Score=197.33  Aligned_cols=156  Identities=22%  Similarity=0.196  Sum_probs=119.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHH
Q 046373           78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYM  157 (364)
Q Consensus        78 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~  157 (364)
                      ...||||.|+..|+.+++++|++++.+     ++..+..|.||||+|+. |+.+++++|+++|++++ ..+..|.||||+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~   76 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVN-----VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LKDRTGFAVIHD   76 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCC-----TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCC-----ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CCCCCCCCHHHH
Confidence            345788888888888888888877754     56677778888888877 88888888888877755 566778888888


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCc
Q 046373          158 AAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPK  237 (364)
Q Consensus       158 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~  237 (364)
                      |+..|+.+++++|++.|++++.++.                            .|.||||+|+..|+.+++++|++++++
T Consensus        77 A~~~~~~~~v~~Ll~~g~~~~~~~~----------------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A           77 AARAGFLDTLQTLLEFQADVNIEDN----------------------------EGNLPLHLAAKEGHLRVVEFLVKHTAS  128 (162)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCC----------------------------CCCCHHHHHHHcCCHHHHHHHHHccCC
Confidence            8888888888888888877765544                            456667777777788888888888877


Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          238 CYELVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       238 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                      +++..+..|+||||+|+..++.+++++|+++
T Consensus       129 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A          129 NVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            6677777888888888888888888888876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=6e-30  Score=200.95  Aligned_cols=158  Identities=21%  Similarity=0.155  Sum_probs=145.6

Q ss_pred             CChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHH
Q 046373            6 IYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHL   85 (364)
Q Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~   85 (364)
                      ..++|+.|+..|+++++++|++.+ .+....+..|.||||+|  +. |+.+++++|++.    +.+++..+..|.||||+
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A--~~-~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~   76 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVM--KL-GNPEIARRLLLR----GANPDLKDRTGFAVIHD   76 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSC-CCTTCCCTTSCCHHHHC--CS-SCHHHHHHHHHT----TCCTTCCCTTSCCHHHH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCC-CCccccCccCccHHHHH--Hc-CcHHHHHHHHHc----CCCCCCCCCCCCCHHHH
Confidence            458999999999999999999987 66677788999999999  88 999999999986    78889999999999999


Q ss_pred             HHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHH
Q 046373           86 AAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSE  165 (364)
Q Consensus        86 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~  165 (364)
                      |+..|+.+++++|++++++     ++..+..|.||||+|+..|+.+++++|++++++.....+..|.|||++|+..|+.+
T Consensus        77 A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~  151 (162)
T 1ihb_A           77 AARAGFLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE  151 (162)
T ss_dssp             HHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            9999999999999999876     78889999999999999999999999999999865688889999999999999999


Q ss_pred             HHHHHHHcCCC
Q 046373          166 MVIELLENCTS  176 (364)
Q Consensus       166 ~v~~Ll~~~~~  176 (364)
                      ++++|+++|++
T Consensus       152 ~~~~Ll~~GAd  162 (162)
T 1ihb_A          152 VVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHTC--
T ss_pred             HHHHHHHhCCC
Confidence            99999999975

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1e-31  Score=222.86  Aligned_cols=192  Identities=17%  Similarity=0.134  Sum_probs=163.9

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCC
Q 046373           72 LLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYG  151 (364)
Q Consensus        72 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~  151 (364)
                      .+..+..+.||||+|+..|+.+++++|++.+++     ++..+..|.||||+|+..|+.+++++|++.|++++ ..|..|
T Consensus        14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n-~~d~~g   87 (229)
T 2vge_A           14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMND-----PSQPNEEGITALHNAICGANYSIVDFLITAGANVN-SPDSHG   87 (229)
T ss_dssp             CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTC
T ss_pred             ccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCC
Confidence            345566778899999999999999999999876     78889999999999999999999999999999976 678889


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHH--HhcCCHHHHH
Q 046373          152 KTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLA--AGQGHARTVE  229 (364)
Q Consensus       152 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a--~~~~~~~~~~  229 (364)
                      .||||+|+..|+.+++++|++.|++++..+.                           ..|.||||+|  +..|+.++++
T Consensus        88 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~---------------------------~~g~tpL~~A~a~~~~~~~~v~  140 (229)
T 2vge_A           88 WTPLHCAASCNDTVICMALVQHGAAIFATTL---------------------------SDGATAFEKCDPYREGYADCAT  140 (229)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCS---------------------------STTCCTGGGCCTTSTTHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccC---------------------------CCCCCHHHHHHHHhcChHHHHH
Confidence            9999999999999999999999999876541                           1466777777  8889999999


Q ss_pred             HHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccc--cccCCCCCCcHHHHHHhcCCcceeehhhh
Q 046373          230 TILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSL--IYEGDNNGNTPLHVLAAIRPKEFFKIKVR  303 (364)
Q Consensus       230 ~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~--i~~~d~~g~t~L~~A~~~~~~~~~~~~ll  303 (364)
                      +|+++|++ ++..|..|.||++.++.....   +.|++.   +++  ++.+|..|+||||+|++.|+.+++.-.++
T Consensus       141 ~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~~---~~ll~~---ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l  209 (229)
T 2vge_A          141 YLADVEQS-MGLMNSGAVYALWDYSAEFGD---ELSFRE---GESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF  209 (229)
T ss_dssp             HHHHHHHH-TTTSGGGEEEESSCBCCSSTT---BCCBCT---TCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred             HHHHcCCC-cccccCCchHHHHHHhhcccc---ccCccc---cccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence            99999998 577888999999876655543   445554   666  78899999999999999999888777665

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=4.5e-29  Score=196.95  Aligned_cols=160  Identities=22%  Similarity=0.207  Sum_probs=142.0

Q ss_pred             cCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCC
Q 046373           39 TKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKN  118 (364)
Q Consensus        39 ~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~  118 (364)
                      .|.||||.|  +..|+.+++++|++.    +.+++..|..|.||||+|+..|+.+++++|++++++     ++..+..|.
T Consensus         2 ~~~t~L~~A--~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~   70 (167)
T 3v31_A            2 ANSLSVHQL--AAQGEMLYLATRIEQ----ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-----PQLLGKGRE   70 (167)
T ss_dssp             TTCCCHHHH--HHTTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCC
T ss_pred             CCcchHHHH--HHCCCHHHHHHHHHc----CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-----CCCcCCCCC
Confidence            578999999  999999999999986    677889999999999999999999999999999866     677888999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhh
Q 046373          119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE  198 (364)
Q Consensus       119 t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~  198 (364)
                      ||||+|+..|+.+++++|++++++++ ..+..|.||||+|+..|+.+++++|+++|++++..+.                
T Consensus        71 t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------------  133 (167)
T 3v31_A           71 SALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD----------------  133 (167)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------------
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------------
Confidence            99999999999999999999999876 6788899999999999999999999999998876554                


Q ss_pred             cchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcc
Q 046373          199 NDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKC  238 (364)
Q Consensus       199 ~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~  238 (364)
                                  .|.|||++|+..|+.+++++|++++.+.
T Consensus       134 ------------~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          134 ------------SGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             ------------TSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ------------CCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence                        5677888888889999999999887653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=2.1e-28  Score=193.41  Aligned_cols=157  Identities=27%  Similarity=0.248  Sum_probs=108.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHH
Q 046373           77 AKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLY  156 (364)
Q Consensus        77 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~  156 (364)
                      ..+.++|+.|+..|+.++|++|++++.+     ++..+..|.||||+|+..|+.+++++|+++|+++. ..+..|.||||
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~   85 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGAD-----VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLR   85 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHH
Confidence            3455677777777777777777777654     56666777777777777777777777777776654 55666777777


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCC
Q 046373          157 MAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDP  236 (364)
Q Consensus       157 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~  236 (364)
                      +|+..|+.+++++|++.|++++..+.                            .|.||||.|+..|+.+++++|+++++
T Consensus        86 ~A~~~~~~~~~~~Ll~~g~~~~~~~~----------------------------~g~t~L~~A~~~~~~~~v~~Ll~~g~  137 (169)
T 2y1l_E           86 LAALFGHLEIVEVLLKNGADVNANDM----------------------------EGHTPLHLAAMFGHLEIVEVLLKNGA  137 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCC----------------------------CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            77777777777777777776654443                            35566666666677777777777777


Q ss_pred             cccccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          237 KCYELVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       237 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                      + ++.+|..|.||+|+|+..++.+++++|+++
T Consensus       138 ~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          138 D-VNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             C-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             C-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            6 466677777777777777777777777664

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=2.2e-28  Score=193.35  Aligned_cols=160  Identities=28%  Similarity=0.240  Sum_probs=140.7

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHH
Q 046373          113 TNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA  192 (364)
Q Consensus       113 ~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~  192 (364)
                      ....+.++|+.|+..|+.+++++|+++|.+++ ..+..|.||||+|+..|+.+++++|++.|++++..+.          
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------   78 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH----------   78 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC----------
Confidence            34567889999999999999999999999876 6788899999999999999999999999998876554          


Q ss_pred             HhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccc
Q 046373          193 MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLAR  272 (364)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~  272 (364)
                                        .|.||||.|+..|+.+++++|++++++ ++..|..|+||||+|+..++.+++++|+++   +
T Consensus        79 ------------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g  136 (169)
T 2y1l_E           79 ------------------AGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKN---G  136 (169)
T ss_dssp             ------------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---T
T ss_pred             ------------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---C
Confidence                              567788888889999999999999998 578899999999999999999999999998   8


Q ss_pred             cccccCCCCCCcHHHHHHhcCCcceeehhhhcccC
Q 046373          273 SLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAG  307 (364)
Q Consensus       273 ~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~  307 (364)
                      ++++.+|..|.||||+|++.++  ...+.+|++.|
T Consensus       137 ~~~~~~~~~g~t~l~~A~~~~~--~~~~~~L~~~G  169 (169)
T 2y1l_E          137 ADVNAQDKFGKTAFDISIDNGN--EDLAEILQKLN  169 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHTC-
T ss_pred             CCCCCcCCCCCCHHHHHHHhCC--HHHHHHHHHcC
Confidence            9999999999999999999999  55555555544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=3.9e-32  Score=240.18  Aligned_cols=234  Identities=14%  Similarity=0.027  Sum_probs=114.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCcCCchHHHH
Q 046373           80 DTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYP--YSENKYGKTSLYM  157 (364)
Q Consensus        80 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~--~~~~~~~~t~l~~  157 (364)
                      .||||+|+..|+.++|++|+++++..  ......+..|.||||+|+..|+.+++++|+++|++..  ...+.. .||||+
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~--~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~  169 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSD--EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL  169 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CC--SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcH--HHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence            35555555555555555555554310  0011122334455555555555555555555554310  011111 555555


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCC--CCCCCCChHHHHH-HhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhc
Q 046373          158 AAEGRYSEMVIELLENCTSVSH--EGPNGKTALHAAA-MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFL  234 (364)
Q Consensus       158 A~~~~~~~~v~~Ll~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~  234 (364)
                      |+..|+.+++++|+++|++++.  .+..|.||||+|+ .....+..+.+....  ..+.|||+.|+..|+.+++++|+++
T Consensus       170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g--a~~~taL~~Aa~~g~~evv~lL~~~  247 (376)
T 2aja_A          170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP--VMLAYAEIHEFEYGEKYVNPFIARH  247 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH--HHHHHHHHCTTTTTTTTHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC--CccchHHHHHHHCCCHHHHHHHHhc
Confidence            5555555555555555555443  4444555555555 443333333332211  1377899999999999999999988


Q ss_pred             CCcccccccCCCCcHHHHHHHcCC---------------------------HHHHHHHHhCccccccc--ccCCCCCCcH
Q 046373          235 DPKCYELVDHRGWNFLHYAMVSFK---------------------------LHELKILLKNPLARSLI--YEGDNNGNTP  285 (364)
Q Consensus       235 ~~~~~~~~d~~g~t~l~~a~~~~~---------------------------~~~~~~ll~~~~~~~~i--~~~d~~g~t~  285 (364)
                      +++. +..+    ++++.|+..|+                           .+.+++|++...-...+  ......+.||
T Consensus       248 ga~~-~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~  322 (376)
T 2aja_A          248 VNRL-KEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL  322 (376)
T ss_dssp             HHHH-HHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHH
T ss_pred             Cccc-cccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHH
Confidence            7763 3222    12333333332                           34455555431110111  1122356789


Q ss_pred             HHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhhhcc
Q 046373          286 LHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGS  328 (364)
Q Consensus       286 L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~~~  328 (364)
                      ||+|+..|+  ...+.+|+..|   .+++..|+|++++|..++
T Consensus       323 L~~A~~~g~--~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~  360 (376)
T 2aja_A          323 LRLALRLGN--QGACALLLSIP---SVLALTKANNYYINETGG  360 (376)
T ss_dssp             HHHHHHHTC--TTHHHHHTTSH---HHHHSCC-----------
T ss_pred             HHHHHHcCc--HHHHHHHHcCh---HHHHHHHHhccccccccc
Confidence            999999999  44555555554   467889999999984433

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1e-28  Score=197.20  Aligned_cols=165  Identities=15%  Similarity=0.110  Sum_probs=80.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHH
Q 046373           78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYM  157 (364)
Q Consensus        78 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~  157 (364)
                      ++.++||.|+..|+.+++++|++.+..    +++..+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~   78 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTEN----DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHL   78 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTS----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcc----cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCCHHHH
Confidence            344555555555555555555554321    134445555555555555555555555555555433 344445555555


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCc
Q 046373          158 AAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPK  237 (364)
Q Consensus       158 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~  237 (364)
                      |+..|+.+++++|++.|++++..+.                            .|.||||+|+..|+.+++++|+++|++
T Consensus        79 A~~~~~~~~v~~Ll~~g~~~~~~d~----------------------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~  130 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQYKADINAVNE----------------------------HGNVPLHYACFWGQDQVAEDLVANGAL  130 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCC----------------------------CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            5555555555555555554443322                            344455555555555555555555544


Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCC
Q 046373          238 CYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGD  279 (364)
Q Consensus       238 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d  279 (364)
                       ++..|..|.||+++|+..++.+++++|++.   +++++..+
T Consensus       131 -~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~---g~~~~~~~  168 (179)
T 3f6q_A          131 -VSICNKYGEMPVDKAKAPLRELLRERAEKM---GQNLNRIP  168 (179)
T ss_dssp             -SSBCCTTSCCGGGGSCHHHHHHHHHHHHHT---TCCCSCBC
T ss_pred             -cchhccCCCCcHHHHHHHHHHHHHHHHHHh---hcCcccCC
Confidence             344455555555555555555555555554   44444433

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=4.6e-28  Score=188.24  Aligned_cols=150  Identities=23%  Similarity=0.224  Sum_probs=91.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHH
Q 046373           80 DTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAA  159 (364)
Q Consensus        80 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  159 (364)
                      .|||+.|+..|+.+++++|++.+.+     ++ .+..|.||||+|+..|+.+++++|++.+++++ ..+..|.||||+|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~-----~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~   75 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAP-----FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC-----CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCC-----CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH
Confidence            3566666666666666666666643     22 35556666666666666666666666666544 45555666666666


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCccc
Q 046373          160 EGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCY  239 (364)
Q Consensus       160 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~  239 (364)
                      ..|+.+++++|+++|++++.++.                            .|.||||+|+..|+.+++++|+++|++ +
T Consensus        76 ~~~~~~~v~~Ll~~g~~~~~~~~----------------------------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~  126 (153)
T 1awc_B           76 SEGHANIVEVLLKHGADVNAKDM----------------------------LKMTALHWATEHNHQEVVELLIKYGAD-V  126 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-T
T ss_pred             HcChHHHHHHHHHcCCCCCCCCC----------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-c
Confidence            66666666666666666554433                            344555555556666666666666665 3


Q ss_pred             ccccCCCCcHHHHHHHcCCHHHHHHH
Q 046373          240 ELVDHRGWNFLHYAMVSFKLHELKIL  265 (364)
Q Consensus       240 ~~~d~~g~t~l~~a~~~~~~~~~~~l  265 (364)
                      +.+|..|+||+|+|+..|+.+++++|
T Consensus       127 ~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          127 HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            55566666666666666666666554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=2.2e-28  Score=195.28  Aligned_cols=168  Identities=20%  Similarity=0.188  Sum_probs=124.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhh
Q 046373          116 EKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHF  195 (364)
Q Consensus       116 ~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~  195 (364)
                      .+.++|+.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.|++++..+.             
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-------------   70 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR-------------   70 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC-------------
Confidence            4667788888888888888888775554456777788888888888888888888888877765544             


Q ss_pred             hhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCccccccc
Q 046373          196 YFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLI  275 (364)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i  275 (364)
                                     .|.||||.|+..|+.+++++|++++++ ++..|..|.||||+|+..++.+++++|+++   ++++
T Consensus        71 ---------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~  131 (179)
T 3f6q_A           71 ---------------GDDTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVAN---GALV  131 (179)
T ss_dssp             ---------------TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCS
T ss_pred             ---------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCc
Confidence                           456666777777788888888888777 467777888888888888888888888877   7778


Q ss_pred             ccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCC
Q 046373          276 YEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQN  317 (364)
Q Consensus       276 ~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g  317 (364)
                      +.+|..|.||||+|+..++  ...+.+|++.|++++..+..+
T Consensus       132 ~~~~~~g~tpl~~A~~~~~--~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          132 SICNKYGEMPVDKAKAPLR--ELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             SBCCTTSCCGGGGSCHHHH--HHHHHHHHHTTCCCSCBCCCC
T ss_pred             chhccCCCCcHHHHHHHHH--HHHHHHHHHhhcCcccCCccc
Confidence            8888888888888887777  566666777777776655444

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.1e-29  Score=212.40  Aligned_cols=207  Identities=14%  Similarity=0.031  Sum_probs=137.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHH
Q 046373           76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL  155 (364)
Q Consensus        76 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l  155 (364)
                      +..|.||||.|+..++.++++.|+++|.+     ++. +..|.||||.|+..|+.+++++|++.+++++ ..+..|.|||
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~-----~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L   74 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMR-----VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITAL   74 (239)
T ss_dssp             -----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCC-----ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHH
Confidence            34688999999999999999999999876     332 3678899999999999999999999988765 6778899999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcC
Q 046373          156 YMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLD  235 (364)
Q Consensus       156 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~  235 (364)
                      |+|+..|+.+++++|+++|++++.++.                            .|.||||+|+..|+.+++++|+++|
T Consensus        75 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~----------------------------~g~tpL~~A~~~~~~~~v~~Ll~~g  126 (239)
T 1ycs_B           75 HNAVCAGHTEIVKFLVQFGVNVNAADS----------------------------DGWTPLHCAASCNNVQVCKFLVESG  126 (239)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCCCT----------------------------TCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCC----------------------------CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999988876655                            4677777888888999999999999


Q ss_pred             CcccccccCCCC-cHHHHH--HHcCCHHHHHHHHhCcccccccccC---------CCCCCcHHHHHHhcCCcceeehhhh
Q 046373          236 PKCYELVDHRGW-NFLHYA--MVSFKLHELKILLKNPLARSLIYEG---------DNNGNTPLHVLAAIRPKEFFKIKVR  303 (364)
Q Consensus       236 ~~~~~~~d~~g~-t~l~~a--~~~~~~~~~~~ll~~~~~~~~i~~~---------d~~g~t~L~~A~~~~~~~~~~~~ll  303 (364)
                      ++ ++..+..|. ||+|+|  +..|+.+++++|++.   +++++..         +..+.++++++.+.|.  ...++. 
T Consensus       127 a~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~---~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~-  199 (239)
T 1ycs_B          127 AA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV---QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIH-  199 (239)
T ss_dssp             CC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH---HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECC-
T ss_pred             CC-cceecCCCCcchHHHHHHhhhccHHHHHHHHHh---hhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEE-
Confidence            88 466776665 999999  778889999999987   6666554         6668899998888887  444333 


Q ss_pred             cccCCc------ccccccCCCchhHHhh
Q 046373          304 YDAGGN------YGAVNKQNVSVTDVLI  325 (364)
Q Consensus       304 ~~~~~~------~~~~n~~g~t~l~~a~  325 (364)
                       ..+.+      ....+..|.+|..|..
T Consensus       200 -~~~~~~~~Ww~~~~~~~~G~~P~~yv~  226 (239)
T 1ycs_B          200 -REDEDEIEWWWARLNDKEGYVPRNLLG  226 (239)
T ss_dssp             -CCTTSCSSEEEEEETTEEEEEEGGGEE
T ss_pred             -ecCCCCCCEEEEEECCcEEEeehHHee
Confidence             33332      2356777888888873

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=4.5e-28  Score=188.30  Aligned_cols=149  Identities=21%  Similarity=0.207  Sum_probs=133.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhh
Q 046373          117 KNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFY  196 (364)
Q Consensus       117 g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  196 (364)
                      ..|+|+.|+..|+.+++++|++.+++..  .+..|.||||+|+..|+.+++++|++.|++++..+.              
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------------   65 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK--------------   65 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT--------------
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--------------
Confidence            3579999999999999999999998764  577899999999999999999999999998876554              


Q ss_pred             hhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccc
Q 046373          197 FENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIY  276 (364)
Q Consensus       197 ~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~  276 (364)
                                    .|.||||.|+..|+.+++++|++++++ ++..|..|+||||+|+..++.+++++|+++   |++++
T Consensus        66 --------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~  127 (153)
T 1awc_B           66 --------------VDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKY---GADVH  127 (153)
T ss_dssp             --------------TCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTT
T ss_pred             --------------CCCCHHHHHHHcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCcc
Confidence                          567788888888999999999999998 578899999999999999999999999998   89999


Q ss_pred             cCCCCCCcHHHHHHhcCCcceee
Q 046373          277 EGDNNGNTPLHVLAAIRPKEFFK  299 (364)
Q Consensus       277 ~~d~~g~t~L~~A~~~~~~~~~~  299 (364)
                      .+|..|.||||+|+..|+.++..
T Consensus       128 ~~~~~g~t~l~~A~~~~~~~i~~  150 (153)
T 1awc_B          128 TQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999955443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.9e-28  Score=192.99  Aligned_cols=159  Identities=23%  Similarity=0.195  Sum_probs=83.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHH
Q 046373          114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM  193 (364)
Q Consensus       114 ~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~  193 (364)
                      +..|.|+||.|+..|+.+++++|++.+.......+..|.||||+|+..|+.+++++|++.|++++.++.           
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----------   73 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-----------   73 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----------
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCC-----------
Confidence            344555555555555555555555543333334444455555555555555555555555555544333           


Q ss_pred             hhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCccccc
Q 046373          194 HFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARS  273 (364)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~  273 (364)
                                       .|.||||+|+..|+.+++++|++++++ ++..|..|+||||+|+..++.+++++|+++   ++
T Consensus        74 -----------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga  132 (165)
T 3twr_A           74 -----------------GGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQH---GA  132 (165)
T ss_dssp             -----------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TC
T ss_pred             -----------------CCCCHHHHHHHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CC
Confidence                             244444555555555555555555555 344555555555555555555555555555   55


Q ss_pred             ccccCCCCCCcHHHHHHhcCCcceeehhhhcccC
Q 046373          274 LIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAG  307 (364)
Q Consensus       274 ~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~  307 (364)
                      +++.+|..|.||||+|.+ ++  ..++.+|+++|
T Consensus       133 ~~~~~~~~g~t~l~~a~~-~~--~~i~~~L~~~g  163 (165)
T 3twr_A          133 DPTKKNRDGNTPLDLVKD-GD--TDIQDLLRGDA  163 (165)
T ss_dssp             CTTCCCTTSCCTGGGSCT-TC--HHHHHHHHTC-
T ss_pred             CCcccCCCCCChhHhHhc-CC--hHHHHHHhhcc
Confidence            555555555555555444 44  33444444444

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=4.5e-29  Score=196.55  Aligned_cols=161  Identities=22%  Similarity=0.317  Sum_probs=137.9

Q ss_pred             CCCCCChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCc
Q 046373            2 NPISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDT   81 (364)
Q Consensus         2 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t   81 (364)
                      ......++|+.|++.|+++++++|++.++.+....+..|.||||+|  +..|+.+++++|++.    +.+++..|..|.|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t   77 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA--AGYNRVSVVEYLLQH----GADVHAKDKGGLV   77 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHH--HHcChHHHHHHHHhc----CCCCCccCCCCCC
Confidence            3445568899999999999999999976565666677888999999  999999999999886    7888889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhc
Q 046373           82 PLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG  161 (364)
Q Consensus        82 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~  161 (364)
                      |||+|+..|+.+++++|++++++     ++..+..|.||||+|+..|+.+++++|+++|+++. ..+..|.||+++|+. 
T Consensus        78 ~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~a~~-  150 (165)
T 3twr_A           78 PLHNACSYGHYEVAELLVKHGAV-----VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-KKNRDGNTPLDLVKD-  150 (165)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCTGGGSCT-
T ss_pred             HHHHHHHcCcHHHHHHHHhCCCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCChhHhHhc-
Confidence            99999999999999999999866     67888899999999999999999999999998865 778889999999776 


Q ss_pred             CCHHHHHHHHHcCC
Q 046373          162 RYSEMVIELLENCT  175 (364)
Q Consensus       162 ~~~~~v~~Ll~~~~  175 (364)
                      ++.+++++|++.|+
T Consensus       151 ~~~~i~~~L~~~gA  164 (165)
T 3twr_A          151 GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TCHHHHHHHHTC--
T ss_pred             CChHHHHHHhhccc
Confidence            88899999998874

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=1.4e-27  Score=186.10  Aligned_cols=154  Identities=22%  Similarity=0.192  Sum_probs=125.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHH
Q 046373           79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMA  158 (364)
Q Consensus        79 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A  158 (364)
                      +.||||.|+..|+.+++++|++...    ..++..+..|.||||+ +..|+.+++++|+++|++++ ..+..|.||||+|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~----~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   75 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHREL----VHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDA   75 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTC----CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhC----cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHH
Confidence            3578888888888888888888721    1267778888888888 88888888888888888865 6677888899988


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcc
Q 046373          159 AEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKC  238 (364)
Q Consensus       159 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~  238 (364)
                      +..|+.+++++|++.|++++..+.                            .|.||||.|+..|+.+++++|+++ ++ 
T Consensus        76 ~~~~~~~~v~~Ll~~g~~~~~~~~----------------------------~g~t~L~~A~~~~~~~~v~~Ll~~-~~-  125 (156)
T 1bd8_A           76 ARTGFLDTLKVLVEHGADVNVPDG----------------------------TGALPIHLAVQEGHTAVVSFLAAE-SD-  125 (156)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCCCT----------------------------TSCCHHHHHHHHTCHHHHHHHHTT-SC-
T ss_pred             HHcCcHHHHHHHHHcCCCCCCcCC----------------------------CCCcHHHHHHHhChHHHHHHHHhc-cC-
Confidence            888888888888888888776554                            466777777788888888888888 55 


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          239 YELVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       239 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                      ++..|..|.||||+|+..|+.+++++|+++
T Consensus       126 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          126 LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            577888888999999988888888888875

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1.9e-31  Score=235.82  Aligned_cols=261  Identities=11%  Similarity=0.002  Sum_probs=163.7

Q ss_pred             CChhHHHHHhcCChHHhhhccCChhHH--HhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCc-----cccccCCC
Q 046373            6 IYPNFFNAAAAGDAETFKRNTTSDEIE--SLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPS-----LLLQVNAK   78 (364)
Q Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~   78 (364)
                      ..++||.|++.|++++|++|++.+..+  ....+..|.||||+|  ++.|+.+++++|++.    ++     +++..+  
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A--a~~G~~eiv~~Ll~~----gad~~~~~i~~~~--  163 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA--AENGHLHVLNRLCEL----APTEIMAMIQAEN--  163 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH--HHTTCHHHHHHHHHS----CTTTHHHHHSHHH--
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH--HHcCCHHHHHHHHhC----CCCccccccCCCC--
Confidence            347899999999999999999987211  012334677899999  999999999999885    42     233333  


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhc--CCCCCCcHHHHHH-HcCCHHHHHHHHhcCCCCCCCCCcCCchHH
Q 046373           79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRM--TNNEKNTALHEAV-CHGNVQVVKILTKQDPDYPYSENKYGKTSL  155 (364)
Q Consensus        79 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~--~~~~g~t~l~~a~-~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l  155 (364)
                       .||||+|+..|+.++|++|+++|++     ++.  .+..|.||||+|+ ..|+.+++++|++.|.        .|.|||
T Consensus       164 -~TpLh~Aa~~G~~eiv~~Ll~~ga~-----~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL  229 (376)
T 2aja_A          164 -YHAFRLAAENGHLHVLNRLCELAPT-----EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAE  229 (376)
T ss_dssp             -HHHHHHHHHTTCHHHHHHHHHSCGG-----GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHH
T ss_pred             -CCHHHHHHHCCCHHHHHHHHHcCCc-----cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHH
Confidence             8999999999999999999999876     333  5667899999999 9999999999998653        278999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHH---HHhcCCHHHHHHHH
Q 046373          156 YMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHL---AAGQGHARTVETIL  232 (364)
Q Consensus       156 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~---a~~~~~~~~~~~Ll  232 (364)
                      ++|+..|+.+++++|+++|++++..+.    +++.|+....++........    .+...+..   +...+..+.+++|+
T Consensus       230 ~~Aa~~g~~evv~lL~~~ga~~~~~~~----~l~~A~~~g~~~vv~~~~~~----~~~~~~~~li~~~~~~~~~~~~~Ll  301 (376)
T 2aja_A          230 IHEFEYGEKYVNPFIARHVNRLKEMHD----AFKLSNPDGVFDLVTKSECL----QGFYMLRNLIRRNDEVLLDDIRFLL  301 (376)
T ss_dssp             HCTTTTTTTTHHHHHHHHHHHHHHHHT----TTTTTSSSSCCCCSSHHHHH----HHHHHHHHHHHHCCGGGHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHhcCcccccccH----HHHHHHHCCChhhhcHHhhh----hhHHHHHHHHHcchhhHHHHHHHHH
Confidence            999999999999999998876543321    23333322222211100000    00001111   11233567788888


Q ss_pred             hcCCccc----ccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhh
Q 046373          233 FLDPKCY----ELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKV  302 (364)
Q Consensus       233 ~~~~~~~----~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~l  302 (364)
                      +.+....    ......+.||||+|+..|+.+++++|++.   +   ..++..|.|++.+|.+.|..++..+-+
T Consensus       302 ~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~---~---~v~~~~~~~~~~~~~~~~~~~~~~~~~  369 (376)
T 2aja_A          302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI---P---SVLALTKANNYYINETGGRLDLRAVAL  369 (376)
T ss_dssp             TSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS---H---HHHHSCC--------------------
T ss_pred             hChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC---h---HHHHHHHHhccccccccccccHHHHHH
Confidence            7543110    11223567899999999999999999986   2   446778999999999999976665543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.8e-28  Score=205.08  Aligned_cols=184  Identities=14%  Similarity=0.113  Sum_probs=129.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHH
Q 046373          114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM  193 (364)
Q Consensus       114 ~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~  193 (364)
                      +..|.||||.|+..++.+.++.|+++|.++..  +..+.||||+|+..|+.+++++|++.|++++.++.           
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-----------   68 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND-----------   68 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT-----------
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-----------
Confidence            34689999999999999999999999998763  46689999999999999999999999999887665           


Q ss_pred             hhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCccccc
Q 046373          194 HFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARS  273 (364)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~  273 (364)
                                       .|.||||+|+..|+.+++++|++++++ ++..|..|+||||+|+..|+.+++++|+++   ++
T Consensus        69 -----------------~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~---ga  127 (239)
T 1ycs_B           69 -----------------EGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVES---GA  127 (239)
T ss_dssp             -----------------TSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TC
T ss_pred             -----------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHc---CC
Confidence                             577788888889999999999999998 588999999999999999999999999998   99


Q ss_pred             ccccCCCCCC-cHHHHH--HhcCCcceeehhhhcccCCccccc---------ccCCCchhHHhhhcccceee
Q 046373          274 LIYEGDNNGN-TPLHVL--AAIRPKEFFKIKVRYDAGGNYGAV---------NKQNVSVTDVLIYGSRELTL  333 (364)
Q Consensus       274 ~i~~~d~~g~-t~L~~A--~~~~~~~~~~~~ll~~~~~~~~~~---------n~~g~t~l~~a~~~~~~~~~  333 (364)
                      +++.++..|. ||||+|  +..|+  ..++.+|+++|++++..         +..+.++.+++...+..+.+
T Consensus       128 ~~~~~~~~~~~t~l~~a~~~~~g~--~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i~v  197 (239)
T 1ycs_B          128 AVFAMTYSDMQTAADKCEEMEEGY--TQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTI  197 (239)
T ss_dssp             CTTCCCSSSCCCHHHHCCSSSTTC--CCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCEEEE
T ss_pred             CcceecCCCCcchHHHHHHhhhcc--HHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCCEEEE
Confidence            9999998877 999999  77788  66777788888887665         55678888888666665543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=2.9e-27  Score=184.35  Aligned_cols=154  Identities=17%  Similarity=0.201  Sum_probs=136.1

Q ss_pred             CCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCc
Q 046373           40 KNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT  119 (364)
Q Consensus        40 g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t  119 (364)
                      +.|+||+|  +..|+.+++++|++.   .+.+++..+..|.||||+ +..|+.+++++|++.|++     ++..+..|.|
T Consensus         2 ~~~~L~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t   70 (156)
T 1bd8_A            2 AGDRLSGA--AARGDVQEVRRLLHR---ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-----PNVQDTSGTS   70 (156)
T ss_dssp             HHHHHHHH--HHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-----TTCCCTTSCC
T ss_pred             cchHHHHH--HHhCCHHHHHHHHHh---hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-----CCCcCCCCCC
Confidence            46899999  999999999999883   345788889999999999 999999999999999876     6888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhc
Q 046373          120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEN  199 (364)
Q Consensus       120 ~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~  199 (364)
                      |||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++. ++++..+.                 
T Consensus        71 ~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~-----------------  131 (156)
T 1bd8_A           71 PVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA-----------------  131 (156)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT-----------------
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC-----------------
Confidence            9999999999999999999998866 6788899999999999999999999998 77765554                 


Q ss_pred             chhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhc
Q 046373          200 DQTAADIADKDRKMTALHLAAGQGHARTVETILFL  234 (364)
Q Consensus       200 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~  234 (364)
                                 .|.||||+|+..|+.+++++|+++
T Consensus       132 -----------~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          132 -----------RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             -----------TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             -----------CCCCHHHHHHHcCcHHHHHHHHhh
Confidence                       577888888889999999999875

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=6.8e-26  Score=172.22  Aligned_cols=134  Identities=16%  Similarity=0.124  Sum_probs=113.9

Q ss_pred             CccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 046373           69 PSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSEN  148 (364)
Q Consensus        69 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~  148 (364)
                      +.+++..+..|.||||+|+..|+.+++++|++++++     ++..+..|.||||+|+. ++.+++++|++++++++ ..+
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~   74 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-----PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-CAD   74 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-CCB
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-----cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-CcC
Confidence            456788888999999999999999999999998865     67788899999999999 99999999999998866 666


Q ss_pred             cC-CchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHH
Q 046373          149 KY-GKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHART  227 (364)
Q Consensus       149 ~~-~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~  227 (364)
                      .. |.||||+|+..|+.+++++|++.|++++.++.                            .|.||||+|+..++.++
T Consensus        75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~----------------------------~g~tpl~~A~~~~~~~~  126 (136)
T 1d9s_A           75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA----------------------------WGRLPVDLAEEQGHRDI  126 (136)
T ss_dssp             TTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSS----------------------------SSSCHHHHHHHHTCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC----------------------------CCCCHHHHHHHcCCHHH
Confidence            77 89999999999999999999999988876655                            56677777888888999


Q ss_pred             HHHHHhcCCc
Q 046373          228 VETILFLDPK  237 (364)
Q Consensus       228 ~~~Ll~~~~~  237 (364)
                      +++|+++|++
T Consensus       127 ~~~Ll~~Gad  136 (136)
T 1d9s_A          127 ARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHcCCC
Confidence            9999988764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=3.3e-26  Score=182.97  Aligned_cols=158  Identities=16%  Similarity=0.110  Sum_probs=117.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCC-CCCCcHHHHHHHcCCH----HHHHHHHhcCCCCCCCCCcCCch
Q 046373           79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTN-NEKNTALHEAVCHGNV----QVVKILTKQDPDYPYSENKYGKT  153 (364)
Q Consensus        79 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~----e~v~~Ll~~~~~~~~~~~~~~~t  153 (364)
                      ++++|+.|+..|+.+.++.++..+.       +..+ ..|.||||+|+..++.    +++++|+++|++++ ..+..|.|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~-------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~T   77 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY-------EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRTKEGTT   77 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS-------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCCTTCCC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc-------ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCCCCCCc
Confidence            4578888888888888888887663       2333 5688888888888864    48888888888866 66778888


Q ss_pred             HHHHHHhcCC------HHHHHHHHHcCCCCCCCCCCCC-ChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHH
Q 046373          154 SLYMAAEGRY------SEMVIELLENCTSVSHEGPNGK-TALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHAR  226 (364)
Q Consensus       154 ~l~~A~~~~~------~~~v~~Ll~~~~~~~~~~~~~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~  226 (364)
                      |||+|+..++      .+++++|+++|++++.++..|. ||||+|+..                 +.+      ..+..+
T Consensus        78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~-----------------~~~------~~~~~~  134 (186)
T 3t8k_A           78 LFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY-----------------FVD------ENEMIP  134 (186)
T ss_dssp             THHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGC-----------------CSC------HHHHHH
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHc-----------------CCC------hhhHHH
Confidence            8888888776      5778888888888888877766 666665421                 000      012346


Q ss_pred             HHHHHHh-cCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          227 TVETILF-LDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       227 ~~~~Ll~-~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                      ++++|++ +|++ ++.+|..|+||||+|+..++.++++.|.+.
T Consensus       135 iv~~Ll~~~gad-~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          135 LYKLIFSQSGLQ-LLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             HHHHHHTSTTCC-TTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            7888888 7887 577888888888888888888888888875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=1.2e-25  Score=175.15  Aligned_cols=141  Identities=16%  Similarity=0.128  Sum_probs=74.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHH
Q 046373          113 TNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA  192 (364)
Q Consensus       113 ~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~  192 (364)
                      .+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+ .|+.+++++|++.|++++.++.          
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~----------   75 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP----------   75 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT----------
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC----------
Confidence            34556666666666666666666666665544 44555666666653 5666666666666666554443          


Q ss_pred             HhhhhhcchhhhhhhccCCCch-HHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCccc
Q 046373          193 MHFYFENDQTAADIADKDRKMT-ALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLA  271 (364)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~t-~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~  271 (364)
                                        .|.| |||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++   
T Consensus        76 ------------------~g~ttpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~---  133 (156)
T 1bi7_B           76 ------------------ATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAA---  133 (156)
T ss_dssp             ------------------TTCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSC---
T ss_pred             ------------------CCCcHHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHc---
Confidence                              2333 55555555666666666666665 355566666666666666666666666665   


Q ss_pred             ccccccCCCCCCcHHH
Q 046373          272 RSLIYEGDNNGNTPLH  287 (364)
Q Consensus       272 ~~~i~~~d~~g~t~L~  287 (364)
                      |++++.++..|.||.+
T Consensus       134 ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B          134 AGGTRGSNHARIDAAE  149 (156)
T ss_dssp             C---------------
T ss_pred             CCCCCccCcCcCcccc
Confidence            6666666666666654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=9.5e-26  Score=175.65  Aligned_cols=144  Identities=18%  Similarity=0.115  Sum_probs=112.6

Q ss_pred             CCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCH
Q 046373          146 SENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHA  225 (364)
Q Consensus       146 ~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~  225 (364)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+..                            |.||||+|+ .|+.
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~----------------------------g~t~L~~A~-~~~~   57 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSY----------------------------GRRPIQVMM-MGSA   57 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSS----------------------------SCCTTTSSC-TTCH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----------------------------CCCHHHHHH-cCCH
Confidence            45667899999999999999999999999998876664                            556666664 7899


Q ss_pred             HHHHHHHhcCCcccccccCCCCc-HHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhc
Q 046373          226 RTVETILFLDPKCYELVDHRGWN-FLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRY  304 (364)
Q Consensus       226 ~~~~~Ll~~~~~~~~~~d~~g~t-~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~  304 (364)
                      +++++|++++++ ++.+|..|+| |||+|+..|+.+++++|+++   +++++.+|..|.||||+|+..++  ...+.+|+
T Consensus        58 ~~v~~Ll~~g~~-~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~--~~~v~~Ll  131 (156)
T 1bi7_B           58 RVAELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGH--RDVARYLR  131 (156)
T ss_dssp             HHHHHHHTTTCC-CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTC--HHHHHHHS
T ss_pred             HHHHHHHHcCCC-CCCcCCCCCcHHHHHHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCH--HHHHHHHH
Confidence            999999999988 5889999999 99999999999999999998   99999999999999999999999  77778888


Q ss_pred             ccCCcccccccCCCchhHHh
Q 046373          305 DAGGNYGAVNKQNVSVTDVL  324 (364)
Q Consensus       305 ~~~~~~~~~n~~g~t~l~~a  324 (364)
                      ++|++++.+|..|.||.+-+
T Consensus       132 ~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          132 AAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             SCC-----------------
T ss_pred             HcCCCCCccCcCcCcccccC
Confidence            99999999999999998744

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=1.3e-26  Score=185.27  Aligned_cols=159  Identities=13%  Similarity=0.095  Sum_probs=135.7

Q ss_pred             CChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcC----CChHHHHHHHhcCCccccccCCCCCc
Q 046373            6 IYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKN----GSTKFIGEMLKKCPSLLLQVNAKGDT   81 (364)
Q Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~g~t   81 (364)
                      .+++|+.|++.|+++.++.+++.+ .+. ..+..|.||||+|  +..++.    +++++|++.    +++++..|..|+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~-~~~-~~~~~g~T~Lh~A--~~~~~~~~~~~iv~~Ll~~----Gadvn~~d~~g~T   77 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG-YED-KESVLKSNILYDV--LRNNNDEARYKISMFLINK----GADIKSRTKEGTT   77 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS-SSC-HHHHHTTTHHHHH--TTCSCHHHHHHHHHHHHHT----TCCSSCCCTTCCC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC-ccc-ccccCCCCHHHHH--HHcCCcchHHHHHHHHHHC----CCCCCCCCCCCCc
Confidence            457899999999999999998876 322 3336899999999  988864    478888876    8999999999999


Q ss_pred             HHHHHHHcCC------HHHHHHHHHHhhHHHhHhhhcCCCCCC-cHHHHHHHcC-----CHHHHHHHHh-cCCCCCCCCC
Q 046373           82 PLHLAAKFGH------SNIVSFLIERAKLAAWQMMRMTNNEKN-TALHEAVCHG-----NVQVVKILTK-QDPDYPYSEN  148 (364)
Q Consensus        82 ~L~~A~~~~~------~~~v~~Ll~~~~~~~~~~~~~~~~~g~-t~l~~a~~~~-----~~e~v~~Ll~-~~~~~~~~~~  148 (364)
                      |||+|+..++      .+++++|+++|++     ++.+|..|. ||||+|+..+     +.+++++|++ +|++++ ..|
T Consensus        78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-----in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~-~~d  151 (186)
T 3t8k_A           78 LFFPLFQGGGNDITGTTELCKIFLEKGAD-----ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-IKD  151 (186)
T ss_dssp             THHHHHHHCTTCHHHHHHHHHHHHHTTCC-----SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT-CCC
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHCCCC-----CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc-ccC
Confidence            9999999987      5789999999977     788999999 9999999854     4579999999 899976 788


Q ss_pred             cCCchHHHHHHhcCCHHHHHHHHHcCCCCC
Q 046373          149 KYGKTSLYMAAEGRYSEMVIELLENCTSVS  178 (364)
Q Consensus       149 ~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~  178 (364)
                      ..|.||||+|+..++.+++++|.+.....+
T Consensus       152 ~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          152 KWGLTALEFVKRCQKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             TTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            899999999999999999999988654333

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=6.4e-26  Score=172.35  Aligned_cols=130  Identities=12%  Similarity=0.175  Sum_probs=120.6

Q ss_pred             hhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcC
Q 046373           34 LLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMT  113 (364)
Q Consensus        34 ~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  113 (364)
                      ...+..|.||||+|  +..|+.+++++|++.    +.+++..|..|.||||+|+. |+.+++++|++++++     ++..
T Consensus         6 ~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-----~~~~   73 (136)
T 1d9s_A            6 HMLGGSSDAGLATA--AARGQVETVRQLLEA----GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-----PNCA   73 (136)
T ss_dssp             SCCCCCCSCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-----SSCC
T ss_pred             cCCCCCCccHHHHH--HHcCCHHHHHHHHHc----CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-----CCCc
Confidence            35566899999999  999999999999986    78899999999999999999 999999999999976     7888


Q ss_pred             CCC-CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCC
Q 046373          114 NNE-KNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTS  176 (364)
Q Consensus       114 ~~~-g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~  176 (364)
                      +.. |.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++
T Consensus        74 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             BTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            888 9999999999999999999999999976 7788999999999999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=2.7e-24  Score=160.98  Aligned_cols=126  Identities=31%  Similarity=0.410  Sum_probs=117.6

Q ss_pred             cCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCC
Q 046373           39 TKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKN  118 (364)
Q Consensus        39 ~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~  118 (364)
                      +|.||||+|  +..|+.+++++|++.    +.+++..+..|.||||+|+..++.+++++|++.+.+     ++..+..|.
T Consensus         1 ~g~t~L~~A--~~~~~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~   69 (126)
T 1n0r_A            1 NGRTPLHLA--ARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGR   69 (126)
T ss_dssp             CCCCHHHHH--HHHTCHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSC
T ss_pred             CCccHHHHH--HHcCcHHHHHHHHHc----CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-----CcccCCCCC
Confidence            589999999  999999999999996    778888999999999999999999999999999876     678889999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCC
Q 046373          119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTS  176 (364)
Q Consensus       119 t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~  176 (364)
                      ||||+|+..++.+++++|+++|+++. ..+..|.|||++|+..++.+++++|+++|++
T Consensus        70 t~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           70 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999999999866 7788899999999999999999999999975

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.3e-23  Score=157.33  Aligned_cols=126  Identities=36%  Similarity=0.487  Sum_probs=114.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHH
Q 046373           78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYM  157 (364)
Q Consensus        78 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~  157 (364)
                      +|.||||+|+..|+.+++++|++++.+     ++..+..|.||||+|+..++.+++++|+++++++. ..+..|.||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~   74 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHL   74 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC-----CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCcHHHH
Confidence            589999999999999999999999865     67789999999999999999999999999999866 677889999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCc
Q 046373          158 AAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPK  237 (364)
Q Consensus       158 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~  237 (364)
                      |+..++.+++++|++.|++++.++.                            .|.|||+.|+..|+.+++++|+++|++
T Consensus        75 A~~~~~~~~~~~Ll~~g~~~~~~~~----------------------------~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           75 AARNGHLEVVKLLLEAGADVNAKDK----------------------------NGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHcChHHHHHHHHHcCCCCcccCC----------------------------CCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999876554                            577888888889999999999999875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=2.4e-24  Score=163.58  Aligned_cols=128  Identities=20%  Similarity=0.254  Sum_probs=115.2

Q ss_pred             hhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCC
Q 046373           35 LTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTN  114 (364)
Q Consensus        35 ~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  114 (364)
                      .....+.||||+|  +..|+.+++++|++.    +.+++..|..|.||||+|+..|+.+++++|++++++     ++..+
T Consensus         9 ~~~~~~~t~l~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~d   77 (136)
T 2jab_A            9 HHGSDLGKKLLEA--ARAGQDDEVRILMAN----GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-----VNAVD   77 (136)
T ss_dssp             ---CHHHHHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCC
T ss_pred             cccccccHHHHHH--HHhCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCcCC
Confidence            3445788999999  999999999999986    788899999999999999999999999999999876     77889


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcC
Q 046373          115 NEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENC  174 (364)
Q Consensus       115 ~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~  174 (364)
                      ..|.||||+|+..|+.+++++|+++|+++. ..+..|.|||++|+..++.+++++|++.|
T Consensus        78 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999999999999865 77888999999999999999999999876

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=9.3e-24  Score=160.35  Aligned_cols=127  Identities=24%  Similarity=0.259  Sum_probs=113.2

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchH
Q 046373           75 VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTS  154 (364)
Q Consensus        75 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~  154 (364)
                      ....+.||||+|+..|+.+++++|++++.+     ++..+..|.||||+|+..|+.+++++|++++++++ ..+..|.||
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~   83 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGAD-----VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTP   83 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCH
Confidence            345678999999999999999999999876     78889999999999999999999999999999876 678889999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhc
Q 046373          155 LYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFL  234 (364)
Q Consensus       155 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~  234 (364)
                      ||+|+..++.+++++|+++|++++..+.                            .|.||||+|+..|+.+++++|+++
T Consensus        84 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------------------------~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           84 LHLAAFIGHLEIAEVLLKHGADVNAQDK----------------------------FGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcCcCC----------------------------CCCCHHHHHHHCCCHHHHHHHHHc
Confidence            9999999999999999999999876554                            577888888889999999999986


Q ss_pred             C
Q 046373          235 D  235 (364)
Q Consensus       235 ~  235 (364)
                      |
T Consensus       136 G  136 (136)
T 2jab_A          136 N  136 (136)
T ss_dssp             -
T ss_pred             C
Confidence            5

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=3.5e-24  Score=171.34  Aligned_cols=141  Identities=23%  Similarity=0.215  Sum_probs=122.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHH
Q 046373           76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL  155 (364)
Q Consensus        76 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l  155 (364)
                      +..|.||||+|+..|+.+++++|++ +.+     ++..+..|.||||+|+..|+.+++++|+++|++++...+..|.|||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL  114 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD-----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL  114 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence            4467899999999999999999999 654     7888999999999999999999999999999998744448899999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhc
Q 046373          156 YMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFL  234 (364)
Q Consensus       156 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~  234 (364)
                      |+|+..|+.+++++|+++|++++.++..|.||||+|+..            .......++|+.|+..|..+++++|.++
T Consensus       115 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~------------~~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI------------LKTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH------------HHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh------------ccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999863            2223567888888888888888888754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=1.1e-23  Score=176.47  Aligned_cols=142  Identities=23%  Similarity=0.207  Sum_probs=121.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHH
Q 046373           76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL  155 (364)
Q Consensus        76 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l  155 (364)
                      +..|.||||+|+..|+.+++++|++ +.+     ++..+..|.||||+|+..|+.+++++|+++|++++...+..|.|||
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L  115 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRD-----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL  115 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCC-----TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence            3467899999999999999999999 654     7888999999999999999999999999999998755548899999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcC
Q 046373          156 YMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLD  235 (364)
Q Consensus       156 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~  235 (364)
                      |+|+..|+.+++++|+++|++++.++..|.||||+|+..            .....+.+||++|+..|+.+++++|+++.
T Consensus       116 ~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~------------~~~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          116 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI------------LKTTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH------------HTTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH------------HhccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            999999999999999999999999999999999998752            22245677888888878888887777653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=4.6e-23  Score=156.76  Aligned_cols=78  Identities=22%  Similarity=0.148  Sum_probs=35.5

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhc
Q 046373          213 MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAI  292 (364)
Q Consensus       213 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~  292 (364)
                      .||||+|+..|+.+++++|++++++ ++..|..|+||||+|+..++.+++++|++.   +++++.+|..|.||||+|+..
T Consensus        44 ~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~  119 (137)
T 3c5r_A           44 WTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSY---GASRNAVNIFGLRPVDYTDDE  119 (137)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGCCCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHhhc
Confidence            3334444444444444444444444 233444444444444444444444444444   444444444444444444444


Q ss_pred             CC
Q 046373          293 RP  294 (364)
Q Consensus       293 ~~  294 (364)
                      +.
T Consensus       120 ~~  121 (137)
T 3c5r_A          120 SM  121 (137)
T ss_dssp             HH
T ss_pred             cH
Confidence            33

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=1.9e-22  Score=153.32  Aligned_cols=114  Identities=24%  Similarity=0.263  Sum_probs=96.2

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCch
Q 046373           74 QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKT  153 (364)
Q Consensus        74 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t  153 (364)
                      ..|..|.||||+|+..|+.+++++|++.+++     ++..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t   78 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-----PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TTGYQNDS   78 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCGGGCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-CcCCCCCC
Confidence            5677889999999999999999999988865     67788889999999999999999999998888865 67778889


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHH
Q 046373          154 SLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM  193 (364)
Q Consensus       154 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~  193 (364)
                      |||+|+..++.+++++|++.|++++.++..|.||+++|+.
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~  118 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD  118 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence            9999999999999999999998888888777777766554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=2.6e-22  Score=172.86  Aligned_cols=138  Identities=21%  Similarity=0.132  Sum_probs=89.8

Q ss_pred             CchHHHHHHhcCCHHHHHHHHHcCCCCCC------CCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhc--
Q 046373          151 GKTSLYMAAEGRYSEMVIELLENCTSVSH------EGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQ--  222 (364)
Q Consensus       151 ~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~------~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~--  222 (364)
                      ..++|+.|+..|+.+.++.|++.|++++.      .+.                            .|.||||+|+..  
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~----------------------------~g~t~Lh~A~~~~~  202 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQA----------------------------PEELVLHLAVKVAN  202 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCS----------------------------CEECHHHHHHHTCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCC----------------------------CCccHHHHHHHhcc
Confidence            45677777777777777777777777665      233                            344555555544  


Q ss_pred             -CCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehh
Q 046373          223 -GHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIK  301 (364)
Q Consensus       223 -~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~  301 (364)
                       ++.+++++|+++|++ ++..|..|+||||+|+..|+.+++++|++.   |++++.+|..|.||||+|+..++  ..++.
T Consensus       203 ~~~~~iv~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---gad~~~~d~~G~TpL~~A~~~~~--~~iv~  276 (301)
T 2b0o_E          203 QASLPLVDFIIQNGGH-LDAKAADGNTALHYAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARKKHH--KECEE  276 (301)
T ss_dssp             TTTHHHHHHHHHHSSC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCCSCCCTTSCCHHHHHHHHTC--HHHHH
T ss_pred             cCcHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCC--HHHHH
Confidence             667777777777776 466677777777777777777777777776   67777777777777777777777  44555


Q ss_pred             hhcccCCcccccccCCCchhHHhhhcc
Q 046373          302 VRYDAGGNYGAVNKQNVSVTDVLIYGS  328 (364)
Q Consensus       302 ll~~~~~~~~~~n~~g~t~l~~a~~~~  328 (364)
                      +|+++|++      .|.||||+|+..+
T Consensus       277 ~Ll~~ga~------~g~tpLh~A~~~g  297 (301)
T 2b0o_E          277 LLEQAQAG------TFAFPLHVDYSWV  297 (301)
T ss_dssp             HHHHHHHH------TTSSCCC------
T ss_pred             HHHHhcCC------CCCChhHHHHhcC
Confidence            55566665      3677777775443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=6.6e-22  Score=147.30  Aligned_cols=111  Identities=23%  Similarity=0.228  Sum_probs=97.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHH
Q 046373           76 NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSL  155 (364)
Q Consensus        76 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l  155 (364)
                      +..|.||||+|+..|+.+++++|++.+.+     ++..+..|.||||+|+..|+.+++++|++++++++ ..+..|.|||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tpL   77 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-----VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPL   77 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-----TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-----cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHH
Confidence            45678999999999999999999998865     67888899999999999999999999999998866 6778899999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHH
Q 046373          156 YMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA  192 (364)
Q Consensus       156 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~  192 (364)
                      |+|+..++.+++++|+++|++++.++..|.||+++|.
T Consensus        78 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           78 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            9999999999999999999999998888888888764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=3.7e-22  Score=171.91  Aligned_cols=144  Identities=17%  Similarity=0.099  Sum_probs=118.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC-----CCcCCchHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCC
Q 046373          113 TNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYS-----ENKYGKTSLYMAAEG---RYSEMVIELLENCTSVSHEGPNG  184 (364)
Q Consensus       113 ~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~-----~~~~~~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~  184 (364)
                      ......++|+.|+..|+.+.++.|++.+++++..     .+..|.||||+|+..   ++.+++++|+++|++++.++.  
T Consensus       147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~--  224 (301)
T 2b0o_E          147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA--  224 (301)
T ss_dssp             CCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT--
T ss_pred             ccCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC--
Confidence            4455678999999999999999999999987643     577899999999987   889999999999999886655  


Q ss_pred             CChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHH
Q 046373          185 KTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKI  264 (364)
Q Consensus       185 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~  264 (364)
                                                .|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++
T Consensus       225 --------------------------~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~  277 (301)
T 2b0o_E          225 --------------------------DGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEEL  277 (301)
T ss_dssp             --------------------------TCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             --------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence                                      577788888888999999999999998 58899999999999999999999999


Q ss_pred             HHhCcccccccccCCCCCCcHHHHHHhcCC
Q 046373          265 LLKNPLARSLIYEGDNNGNTPLHVLAAIRP  294 (364)
Q Consensus       265 ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~  294 (364)
                      |++.   +++      .|.||||+|+.+|+
T Consensus       278 Ll~~---ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          278 LEQA---QAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHH---HHH------TTSSCCC-------
T ss_pred             HHHh---cCC------CCCChhHHHHhcCC
Confidence            9987   665      48899999999887

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=7.5e-22  Score=147.01  Aligned_cols=109  Identities=17%  Similarity=0.096  Sum_probs=102.3

Q ss_pred             CCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHH
Q 046373          211 RKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLA  290 (364)
Q Consensus       211 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~  290 (364)
                      .+.||||.|+..|+.+++++|++.+.+ ++..|..|+||||+|+..++.+++++|++.   +++++.+|..|.||||+|+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCcCCCCCCCHHHHHH
Confidence            578999999999999999999999988 588899999999999999999999999998   8999999999999999999


Q ss_pred             hcCCcceeehhhhcccCCcccccccCCCchhHHhh
Q 046373          291 AIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLI  325 (364)
Q Consensus       291 ~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~  325 (364)
                      ..++  ...+.+|+++|++++.+|..|+||+|+|.
T Consensus        82 ~~~~--~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGH--VSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTC--HHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             HcCC--HHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            9999  66777888899999999999999999994

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=2e-22  Score=166.38  Aligned_cols=125  Identities=23%  Similarity=0.206  Sum_probs=76.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCChHHHHH
Q 046373          114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN-CTSVSHEGPNGKTALHAAA  192 (364)
Q Consensus       114 ~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~  192 (364)
                      +..|.||||+|+..|+.+++++|++.+++++ ..+..|.||||+|+..|+.+++++|++. |++++.++.          
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~----------  138 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK----------  138 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCT----------
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCC----------
Confidence            5566667777766666666666666666644 4555666666666666666666666666 666554433          


Q ss_pred             HhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          193 MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                                        .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..+..++++.+++.
T Consensus       139 ------------------~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~  195 (222)
T 3ehr_A          139 ------------------LGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGT  195 (222)
T ss_dssp             ------------------TSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC-----
T ss_pred             ------------------CCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhcc
Confidence                              455666666666666666666666665 355666666666666666666666665554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=9.6e-23  Score=168.32  Aligned_cols=165  Identities=16%  Similarity=0.112  Sum_probs=121.6

Q ss_pred             hhHHHHHhcCChHHhhhccCChh--------------HHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCcccc
Q 046373            8 PNFFNAAAAGDAETFKRNTTSDE--------------IESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLL   73 (364)
Q Consensus         8 ~~l~~A~~~g~~~~v~~ll~~~~--------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~   73 (364)
                      ++...+++.|++..+..+.+.+-              ......+..|.||||+|  +..|+.+++++|++.    +.+++
T Consensus        27 ~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~  100 (222)
T 3ehr_A           27 TPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEA--AKRGNLSWLRECLDN----RVGVN  100 (222)
T ss_dssp             STTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHH--HHHTCHHHHHHHHHT----TCCTT
T ss_pred             CCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccc--cccCcHHHHHHHHhC----CCCcc
Confidence            34555667777776665554420              11224556788999999  999999999999885    77788


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHH-hhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCc
Q 046373           74 QVNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGK  152 (364)
Q Consensus        74 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~  152 (364)
                      ..|..|.||||+|+..|+.++|++|++. +++     ++..+..|.||||+|+..|+.+++++|+++|+++. ..+..|.
T Consensus       101 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~  174 (222)
T 3ehr_A          101 GLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-----LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD-LRNIEKK  174 (222)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-----CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-----ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCC
Confidence            8899999999999999999999999988 654     77888999999999999999999999999998866 7788899


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 046373          153 TSLYMAAEGRYSEMVIELLENCTSVSHEGPNG  184 (364)
Q Consensus       153 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  184 (364)
                      |||++|+..++.++++.|++.++.....+..+
T Consensus       175 t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          175 LAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             CHHHHCCSHHHHHHHC----------------
T ss_pred             CHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            99999999999999999999988776655543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=4.9e-22  Score=158.84  Aligned_cols=110  Identities=25%  Similarity=0.213  Sum_probs=67.7

Q ss_pred             cCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCC-CCC
Q 046373           39 TKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTN-NEK  117 (364)
Q Consensus        39 ~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~-~~g  117 (364)
                      .|.||||+|  +..|+.+++++|++     +.+++..|..|.||||+|+..|+.+++++|++++++     ++..+ ..|
T Consensus        43 ~g~t~L~~A--~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-----~~~~~~~~g  110 (183)
T 3deo_A           43 EYETPWWTA--ARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-----LDHRDMRGG  110 (183)
T ss_dssp             HHHHHHHHH--HHTTCHHHHHHHTT-----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCSSSS
T ss_pred             CCCCHHHHH--HHcCCHHHHHHHHh-----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCcCCCCCC
Confidence            556666666  66666666666655     445566666666666666666666666666666644     44444 556


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhc
Q 046373          118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEG  161 (364)
Q Consensus       118 ~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~  161 (364)
                      .||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..
T Consensus       111 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          111 LTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREI  153 (183)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHH
T ss_pred             CCHHHHHHhcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHh
Confidence            666666666666666666666666644 4555666666666554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=3e-21  Score=169.97  Aligned_cols=148  Identities=18%  Similarity=0.125  Sum_probs=73.4

Q ss_pred             CCcHHHHHHHc-CCHHHHHHHHhcCCCCCCCCC--cCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHH
Q 046373          117 KNTALHEAVCH-GNVQVVKILTKQDPDYPYSEN--KYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM  193 (364)
Q Consensus       117 g~t~l~~a~~~-~~~e~v~~Ll~~~~~~~~~~~--~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~  193 (364)
                      +.|+||.|+.. ++.+++++|++.|++++ ..+  ..|.||||+|+..|+.+++++|+++|++++..+.           
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~-----------  266 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS-----------  266 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-----------
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC-----------
Confidence            44566666666 66666666666666654 233  4566666666666666666666666666554443           


Q ss_pred             hhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCccccc
Q 046373          194 HFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARS  273 (364)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~  273 (364)
                                       .|.||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..++.+++++|+.......
T Consensus       267 -----------------~G~TpLh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~  328 (368)
T 3jue_A          267 -----------------AGRGPLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREA  328 (368)
T ss_dssp             -----------------TSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---
T ss_pred             -----------------CCCCHHHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc
Confidence                             344555555555666666666666665 35556666666666666666666666665432233


Q ss_pred             ccccCCCCCCcHHHHHHhcCC
Q 046373          274 LIYEGDNNGNTPLHVLAAIRP  294 (364)
Q Consensus       274 ~i~~~d~~g~t~L~~A~~~~~  294 (364)
                      .....+..+.|+++++..+..
T Consensus       329 ~~~~~~~~~~t~l~i~~~~~~  349 (368)
T 3jue_A          329 EAAQGQAGDETYLDIFRDFSL  349 (368)
T ss_dssp             ---------------------
T ss_pred             cccccCCCCCCHHHHHHHHHh
Confidence            333344455566665555443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=7.3e-22  Score=165.25  Aligned_cols=135  Identities=21%  Similarity=0.197  Sum_probs=84.0

Q ss_pred             hHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHH
Q 046373            9 NFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAK   88 (364)
Q Consensus         9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~   88 (364)
                      ++..++..|+.+.++.+...+ .   ..+..|.||||+|  ++.|+.+++++|++     +.+++..|..|.||||+|+.
T Consensus        18 ~~l~~~~~g~~~~~~~~~~~~-~---~~~~~g~t~L~~A--~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~   86 (244)
T 3ui2_A           18 EYLIEWKDGHSPSWVPSSYIA-A---DVVSEYETPWWTA--ARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAG   86 (244)
T ss_dssp             EEEEEESSCCCCEEEEGGGSC-H---HHHHHHHHHHHHH--HTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHHHHHH
T ss_pred             HHHHHHHcCCCcccccccccc-c---ccccCCCCHHHHH--HHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHHHHHH
Confidence            344555666666655544443 1   1223566677777  66666666666655     45566666667777777777


Q ss_pred             cCCHHHHHHHHHHhhHHHhHhhhcCC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHh
Q 046373           89 FGHSNIVSFLIERAKLAAWQMMRMTN-NEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE  160 (364)
Q Consensus        89 ~~~~~~v~~Ll~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  160 (364)
                      .|+.++|++|++++++     ++..+ ..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+.
T Consensus        87 ~g~~~~v~~Ll~~ga~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A           87 LGSDKCVRLLAEAGAD-----LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELARE  153 (244)
T ss_dssp             HTCHHHHHHHHHTTCC-----TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCC-----CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHH
Confidence            7777777777766654     44455 566677777777777777777777666654 556666666666664

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.2e-20  Score=132.96  Aligned_cols=93  Identities=37%  Similarity=0.515  Sum_probs=80.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHH
Q 046373           78 KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYM  157 (364)
Q Consensus        78 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~  157 (364)
                      +|+||||+|+..|+.+++++|++.+++     ++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~   74 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHL   74 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-----CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHH
Confidence            478999999999999999999998865     67888899999999999999999999999998866 677889999999


Q ss_pred             HHhcCCHHHHHHHHHcCCC
Q 046373          158 AAEGRYSEMVIELLENCTS  176 (364)
Q Consensus       158 A~~~~~~~~v~~Ll~~~~~  176 (364)
                      |+..|+.+++++|+++|++
T Consensus        75 A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCHHHHHHHHHcCCC
Confidence            9999999999999998864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=1.6e-20  Score=159.80  Aligned_cols=199  Identities=16%  Similarity=0.177  Sum_probs=141.4

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCC-CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCc
Q 046373           74 QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNE-KNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGK  152 (364)
Q Consensus        74 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~-g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~  152 (364)
                      ..|..+.+.++.+...|+..+.+++...-+..     ...... +....+    ....-..+++................
T Consensus        61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~-----~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l  131 (278)
T 1dcq_A           61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSE-----DPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKL  131 (278)
T ss_dssp             TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSS-----SCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHH
T ss_pred             ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChh-----hcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhh
Confidence            35677889999999999887766654332110     000111 111111    11111222333222221112222345


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhc---CCHHHHH
Q 046373          153 TSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQ---GHARTVE  229 (364)
Q Consensus       153 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~---~~~~~~~  229 (364)
                      ++|+.|+..++.+.++.+++.|++++..-.                      .......|.||||+|+..   |+.++++
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~----------------------l~~~~~~g~t~Lh~A~~~~~~~~~~~v~  189 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIP----------------------LANGHEPDETALHLAVRSVDRTSLHIVD  189 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCC----------------------CSSCSSTTCBHHHHHHHHCCTTTHHHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhcc----------------------ccccccCCCCcchHHHHhcccchHHHHH
Confidence            799999999999999999999988653210                      001123688999999998   8999999


Q ss_pred             HHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCc
Q 046373          230 TILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGN  309 (364)
Q Consensus       230 ~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~  309 (364)
                      +|+++|++ ++..|..|+||||+|+..|+.+++++|++.   |++++.+|..|.||||+|+..|+  ..++.+|+++|++
T Consensus       190 ~Ll~~ga~-in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~--~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          190 FLVQNSGN-LDKQTGKGSTALHYCCLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKH--EHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHCSC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHHHTT
T ss_pred             HHHHCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCccCCCCCHHHHHHHcCC--HHHHHHHHHcCCC
Confidence            99999999 688999999999999999999999999998   99999999999999999999999  5566666677764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=4.1e-20  Score=162.72  Aligned_cols=146  Identities=14%  Similarity=0.093  Sum_probs=111.1

Q ss_pred             CCchHHHHHHhc-CCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHH
Q 046373          150 YGKTSLYMAAEG-RYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTV  228 (364)
Q Consensus       150 ~~~t~l~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~  228 (364)
                      .+.|+||.|+.. ++.++++.|++.|++++..+.                          ...|.||||+|+..|+.+++
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~--------------------------~~~g~TpLh~Aa~~g~~~iv  251 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNG--------------------------GQDNATPLIQATAANSLLAC  251 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCT--------------------------TTTCCCHHHHHHHTTCHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCcccc--------------------------ccCCCCHHHHHHHCCCHHHH
Confidence            456899999999 999999999999999886552                          12578899999999999999


Q ss_pred             HHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcc-cC
Q 046373          229 ETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYD-AG  307 (364)
Q Consensus       229 ~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~-~~  307 (364)
                      ++|+++|++ ++..|..|+||||+|+..|+.+++++|+++   +++++.+|..|.||||+|+..++.+++.+++... ..
T Consensus       252 ~~LL~~Gad-vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~---Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~  327 (368)
T 3jue_A          252 EFLLQNGAN-VNQADSAGRGPLHHATILGHTGLACLFLKR---GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE  327 (368)
T ss_dssp             HHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred             HHHHHcCCC-CCCCCCCCCCHHHHHHHcCcHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence            999999998 688999999999999999999999999998   9999999999999999999999966555544433 23


Q ss_pred             CcccccccCCCchhHHhh
Q 046373          308 GNYGAVNKQNVSVTDVLI  325 (364)
Q Consensus       308 ~~~~~~n~~g~t~l~~a~  325 (364)
                      ++....+..+.|+++++.
T Consensus       328 ~~~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          328 AEAAQGQAGDETYLDIFR  345 (368)
T ss_dssp             ------------------
T ss_pred             ccccccCCCCCCHHHHHH
Confidence            344466777899998884

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=1.1e-20  Score=138.94  Aligned_cols=109  Identities=28%  Similarity=0.321  Sum_probs=98.4

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCch
Q 046373           74 QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKT  153 (364)
Q Consensus        74 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t  153 (364)
                      ..|.+|.||||+|+..|+.+++++|++++++     ++..+..|.||||+|+..++.+++++|+++|+++. ..+..|.|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t   77 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-----VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNT   77 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-----SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CCCTTCCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCC
Confidence            4678999999999999999999999999865     78889999999999999999999999999999876 67888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChH
Q 046373          154 SLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTAL  188 (364)
Q Consensus       154 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l  188 (364)
                      |||+|+..++.+++++|+++|++++..+..|.+|-
T Consensus        78 pl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           78 PEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999999888887763

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.81  E-value=1.3e-19  Score=154.26  Aligned_cols=130  Identities=18%  Similarity=0.085  Sum_probs=112.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHHhhHHHhHh-hhcCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCcCCchHH
Q 046373           80 DTPLHLAAKFGHSNIVSFLIERAKLAAWQM-MRMTNNEKNTALHEAVCH---GNVQVVKILTKQDPDYPYSENKYGKTSL  155 (364)
Q Consensus        80 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~~~~g~t~l~~a~~~---~~~e~v~~Ll~~~~~~~~~~~~~~~t~l  155 (364)
                      .++|+.|+..|+.+.++.+++.+.+..... ++..+..|.||||+|+..   |+.+++++|+++|++++ ..|..|.|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in-~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc-ccCCCCCCHH
Confidence            578999999999999999999987632222 444578899999999999   89999999999999976 7788899999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcC
Q 046373          156 YMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLD  235 (364)
Q Consensus       156 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~  235 (364)
                      |+|+..|+.+++++|+++|++++.++.                            .|.||||+|+..|+.+++++|++++
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~~~d~----------------------------~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIEIANE----------------------------SGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCccC----------------------------CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999999887665                            5777888888889999999999988


Q ss_pred             Ccc
Q 046373          236 PKC  238 (364)
Q Consensus       236 ~~~  238 (364)
                      ++.
T Consensus       262 a~~  264 (278)
T 1dcq_A          262 SGR  264 (278)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            864

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=4.6e-20  Score=129.97  Aligned_cols=93  Identities=29%  Similarity=0.409  Sum_probs=85.8

Q ss_pred             cCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCC
Q 046373           39 TKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKN  118 (364)
Q Consensus        39 ~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~  118 (364)
                      +|.||||+|  +..|+.+++++|++.    +.+++..|..|.||||+|+..|+.+++++|++++++     ++..+..|.
T Consensus         1 ~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-----~~~~d~~g~   69 (93)
T 1n0q_A            1 NGRTPLHLA--ARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGR   69 (93)
T ss_dssp             --CCHHHHH--HHHTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSC
T ss_pred             CCCcHHHHH--HHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCC
Confidence            489999999  999999999999986    788999999999999999999999999999999976     788899999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCC
Q 046373          119 TALHEAVCHGNVQVVKILTKQDPD  142 (364)
Q Consensus       119 t~l~~a~~~~~~e~v~~Ll~~~~~  142 (364)
                      ||||+|+..|+.+++++|+++|++
T Consensus        70 t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           70 TPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999998863

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=9.7e-20  Score=133.77  Aligned_cols=107  Identities=23%  Similarity=0.214  Sum_probs=97.7

Q ss_pred             cCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHH
Q 046373          209 KDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV  288 (364)
Q Consensus       209 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~  288 (364)
                      +..|.||||.|+..|+.+++++|++++++ ++..|..|+||||+|+..++.+++++|++.   +++++.+|..|.||||+
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK---GADVNARSKDGNTPEHL   81 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTT---TCCTTCCCTTCCCTTHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCcccCCCCCCHHHH
Confidence            45799999999999999999999999998 588899999999999999999999999998   89999999999999999


Q ss_pred             HHhcCCcceeehhhhcccCCcccccccCCCchh
Q 046373          289 LAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVT  321 (364)
Q Consensus       289 A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l  321 (364)
                      |+..++  ...+.+|+++|++++.++..|.+|-
T Consensus        82 A~~~~~--~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGH--HEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTC--HHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHCCC--HHHHHHHHHcCCCCCcCCccccccc
Confidence            999999  6677788899999999999999885

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.72  E-value=1.6e-17  Score=120.69  Aligned_cols=95  Identities=22%  Similarity=0.329  Sum_probs=77.5

Q ss_pred             ccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCc
Q 046373           70 SLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENK  149 (364)
Q Consensus        70 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~  149 (364)
                      ......|.+|.||||+|+..|+.+++++|++.+++     ++..+..|.||||+|+..|+.+++++|+++|++++ ..+.
T Consensus        15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-~~d~   88 (110)
T 2zgd_A           15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-----VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDK   88 (110)
T ss_dssp             -------CCHHHHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-cccc
Confidence            34556778889999999999999999999988865     67788889999999999999999999999988865 6777


Q ss_pred             CCchHHHHHHhcCCHHHHHHH
Q 046373          150 YGKTSLYMAAEGRYSEMVIEL  170 (364)
Q Consensus       150 ~~~t~l~~A~~~~~~~~v~~L  170 (364)
                      .|.||||+|+..|+.+++++|
T Consensus        89 ~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           89 FGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHh
Confidence            899999999999999998876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.67  E-value=3.2e-16  Score=113.75  Aligned_cols=90  Identities=23%  Similarity=0.178  Sum_probs=50.9

Q ss_pred             CCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHH
Q 046373          147 ENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHAR  226 (364)
Q Consensus       147 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~  226 (364)
                      .+..|.||||+|+..|+.+++++|++.|++++.++.                            .|.||||+|+..|+.+
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~----------------------------~g~tpLh~A~~~~~~~   71 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK----------------------------NGSTPLHLAARNGHLE   71 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------------------------TCCCHHHHHHHTTCHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCC----------------------------CCCCHHHHHHHcCCHH
Confidence            344556666666666666666666666655544333                            3445555555556666


Q ss_pred             HHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHH
Q 046373          227 TVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKIL  265 (364)
Q Consensus       227 ~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~l  265 (364)
                      ++++|+++|++ ++..|..|+||||+|+..++.+++++|
T Consensus        72 ~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           72 VVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCC-ccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            66666666555 355566666666666666666655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	364
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.001
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	3e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.001
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 6e-23
 Identities = 65/224 (29%), Positives = 93/224 (41%), Gaps = 17/224 (7%)

Query: 81  TPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQ 139
           TPLH+A+  GH  IV  L++R A          +N +  T LH A   G+ +V K L + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNV------SNVKVETPLHMAARAGHTEVAKYLLQN 55

Query: 140 DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM-----H 194
                 ++ K  +T L+ AA   ++ MV  LLEN  + +     G T LH AA       
Sbjct: 56  KAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVET 114

Query: 195 FYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAM 254
                ++ A+      +  T LH+AA  G  R  E +L  D          G   LH A+
Sbjct: 115 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAV 173

Query: 255 VSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFF 298
               L  +K+LL         +    NG TPLH+ A     E  
Sbjct: 174 HHNNLDIVKLLLPR---GGSPHSPAWNGYTPLHIAAKQNQVEVA 214

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (222), Expect = 1e-20
 Identities = 60/291 (20%), Positives = 103/291 (35%), Gaps = 49/291 (16%)

Query: 54  KNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRM 112
             G    +  +L++  S  +  N K +TPLH+AA+ GH+ +  +L++  AK+ A      
Sbjct: 9   FMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKVNA------ 61

Query: 113 TNNEKNTALHEAVCHGNVQVVKILTKQDPD------------------------------ 142
              +  T LH A   G+  +VK+L + + +                              
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 143 --YPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE-- 198
                   K G T L++AA+     +   LLE     +  G NG T LH A  H   +  
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 199 --NDQTAADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMV 255
                             T LH+AA Q         L            +G   LH A  
Sbjct: 182 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV-ARSLLQYGGSANAESVQGVTPLHLAA- 239

Query: 256 SFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDA 306
             +    +++      ++    G+ +G TPLH++A         + +++  
Sbjct: 240 --QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 288

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 6e-18
 Identities = 43/195 (22%), Positives = 74/195 (37%), Gaps = 8/195 (4%)

Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
           T LH A   G++ +VK L ++    P   N   +T L+MAA   ++E+   LL+N   V+
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 179 HEGPNGKTALHAAAMHFYFENDQT----AADIADKDRKMTALHLAAGQGHARTVETILFL 234
            +  + +T LH AA   +    +      A+              A +         L  
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 235 DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRP 294
                  +  +G+  LH A    K+   ++LL+     +       NG TPLHV      
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLER---DAHPNAAGKNGLTPLHVAVHHNN 177

Query: 295 KEFFKIKVRYDAGGN 309
            +  K+ +      +
Sbjct: 178 LDIVKLLLPRGGSPH 192

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (197), Expect = 2e-17
 Identities = 61/238 (25%), Positives = 98/238 (41%), Gaps = 17/238 (7%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
           +  KG TPLH+AAK+G   +   L+ER                 T LH AV H N+ +VK
Sbjct: 128 MTKKGFTPLHVAAKYGKVRVAELLLERDA-----HPNAAGKNGLTPLHVAVHHNNLDIVK 182

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH 194
           +L  +    P+S    G T L++AA+    E+   LL+   S + E   G T LH AA  
Sbjct: 183 LLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 241

Query: 195 FYFE------NDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWN 248
            + E      + Q   ++ +K   +T LHL A +GH    + ++              + 
Sbjct: 242 GHAEMVALLLSKQANGNLGNKS-GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG-YT 299

Query: 249 FLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDA 306
            LH A     +  +K        ++ +      G +PLH  A     +   + ++  A
Sbjct: 300 PLHVASHYGNIKLVKF---LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 354

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 2e-14
 Identities = 48/233 (20%), Positives = 82/233 (35%), Gaps = 21/233 (9%)

Query: 63  EMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNT 119
           +++K         ++    G TPLH+AAK     +   L++             + +  T
Sbjct: 179 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY-----GGSANAESVQGVT 233

Query: 120 ALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSH 179
            LH A   G+ ++V +            NK G T L++ A+  +  +   L+++   V  
Sbjct: 234 PLHLAAQEGHAEMVAL-LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 292

Query: 180 EGPNGKTALHAAAMH------FYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILF 233
               G T LH A+ +       +    Q   +   K    + LH AA QGH   V  +L 
Sbjct: 293 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL-GYSPLHQAAQQGHTDIVTLLLK 351

Query: 234 L--DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNT 284
               P     V   G   L  A     +    +L       S +   D +  +
Sbjct: 352 NGASP---NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 213 MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLAR 272
           +T LH+A+  GH   V+ +L        + + +    LH A  +      K LL+N   +
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQN---K 56

Query: 273 SLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDA 306
           + +     +  TPLH  A I      K+ +  +A
Sbjct: 57  AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 90

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 81.9 bits (201), Expect = 5e-18
 Identities = 37/220 (16%), Positives = 72/220 (32%), Gaps = 22/220 (10%)

Query: 74  QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
            + A+      LAA+ GH ++++ L E    A  ++M M   E   A   A  +G++ V+
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCEL---APTEIMAMIQAENYHAFRLAAENGHLHVL 177

Query: 134 KILTKQ--DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAA 191
             L +          + +      + A    +  ++  LL+              A    
Sbjct: 178 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-------PVMLAYAEIHE 230

Query: 192 AMHFYFENDQTAADIADKDRKM-TALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFL 250
             +     +   A   ++ ++M  A  L+   G    V        K   L        L
Sbjct: 231 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT-------KSECLQGFYMLRNL 283

Query: 251 HYAMVSFKLHELKILLKNPLARSLIYEGD--NNGNTPLHV 288
                   L +++ LL  P  ++L        + N  L +
Sbjct: 284 IRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 323

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 52.6 bits (125), Expect = 3e-08
 Identities = 31/211 (14%), Positives = 60/211 (28%), Gaps = 40/211 (18%)

Query: 54  KNGSTKFIGEMLKKCPSLLLQ-VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRM 112
           +NG    +  + +  P+ ++  + A+      LAA+ GH ++++ L E A   A  M++ 
Sbjct: 135 ENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQA 194

Query: 113 TNNEKNTALHEAVCHGNVQVVKILTKQDPD---------------------YPYSENKYG 151
            N         AV  G+  V+  L                              +  K  
Sbjct: 195 ENY--YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 252

Query: 152 KTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE----------NDQ 201
             +  ++      ++V +      S   +G      L         +             
Sbjct: 253 HDAFKLSNPDGVFDLVTK------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKA 306

Query: 202 TAADIADKDRKMTALHLAAGQGHARTVETIL 232
            A            L LA   G+      +L
Sbjct: 307 LAPTATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 50.3 bits (119), Expect = 2e-07
 Identities = 37/237 (15%), Positives = 69/237 (29%), Gaps = 35/237 (14%)

Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKN-TALHEAVCHGNVQVVK 134
           N + D  L L       N+    I   +L+      MT + K    +         QV +
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELS-----LMTLSYKEAIHIFLPGTKNMEQVRQ 63

Query: 135 ILTKQDPDY----------PYSENKYGKTSLYMAAEGRYS---EMVIELLENCTSVSHEG 181
           +L      Y           + +    +   ++AA    S   + +  LL +   V    
Sbjct: 64  LLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ 123

Query: 182 PNGKTALHAAAMHFYFE---------NDQTAADIADKDRKMTALHLAAGQGHARTVETIL 232
                A   AA + +             +  A I  ++    A  LAA  GH   +  + 
Sbjct: 124 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY--HAFRLAAENGHLHVLNRLC 181

Query: 233 FL--DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLH 287
            L        +     + F   A+     + +  LL  P    ++   + +      
Sbjct: 182 ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP---VMLAYAEIHEFEYGE 235

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.5 bits (104), Expect = 9e-06
 Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 4/122 (3%)

Query: 199 NDQTAADIADKDRK-MTALHLAAGQGHARTVETILFLDPKCYEL--VDHRGWNFLHYAMV 255
             Q  +D   K  K      +AA  G +  ++T+  L      +  +    +     A  
Sbjct: 76  AKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 135

Query: 256 SFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNK 315
           +  LH L  L +      ++            + A                      +  
Sbjct: 136 NGHLHVLNRLCELA-PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQA 194

Query: 316 QN 317
           +N
Sbjct: 195 EN 196

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 10/124 (8%), Positives = 21/124 (16%), Gaps = 22/124 (17%)

Query: 71  LLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKN------------ 118
            LL              ++G   +  F+                +  +            
Sbjct: 215 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 274

Query: 119 ------TALHEAVCHGNVQVVKILTKQDPDYPYSE----NKYGKTSLYMAAEGRYSEMVI 168
                   L        +  ++ L         +            L +A          
Sbjct: 275 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 334

Query: 169 ELLE 172
            LL 
Sbjct: 335 LLLS 338

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 5e-17
 Identities = 48/285 (16%), Positives = 92/285 (32%), Gaps = 32/285 (11%)

Query: 41  NTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIE 100
           N +L   +     +N     + ++L+   ++  Q    G TPLH A +    +IV  L+ 
Sbjct: 6   NHLLIKAV-----QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 101 RAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE 160
                      +   +                +  L           + YG T+   AA 
Sbjct: 61  ------HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114

Query: 161 GRYSEMVIELLENCTS----------VSHEGPNGKTALHAAAMHFYFEN-----DQTAAD 205
               + +  L +   +                 G TAL  AA   + E      D+  AD
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174

Query: 206 IADKDRK----MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHE 261
           +   D      +    L++       +  +L        +   RG   L  A+    L  
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234

Query: 262 LKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDA 306
           ++ LL+       I + D++G T L +   ++ K+  ++  +  A
Sbjct: 235 VQRLLEQEHIE--INDTDSDGKTALLLAVELKLKKIAELLCKRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 2e-15
 Identities = 40/226 (17%), Positives = 73/226 (32%), Gaps = 21/226 (9%)

Query: 78  KGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKIL 136
           + +  L  A +    ++V  L+E  A +              T LH AV      +V++L
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNF-----QEEEGGWTPLHNAVQMSREDIVELL 58

Query: 137 TKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFY 196
            +   D    +       L  A  G    + + L +       +       + AA     
Sbjct: 59  LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 118

Query: 197 FENDQTAADIADKDRK--------------MTALHLAAGQGHARTVETILFLDPKCYELV 242
                     A+ + +               TAL  AA +GH   ++ +L          
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178

Query: 243 DHRGWNFLHYAMVSFKLHELKILLKNPLARSL-IYEGDNNGNTPLH 287
           D+ G N L +A++S    +++ +    L     +      G TPL 
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-08
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 13  AAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLL 72
           AA  G  E  K     DE+ + + A        +        +   + I  +L    + +
Sbjct: 155 AAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212

Query: 73  LQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQV 132
                +G TPL LA +  H  +V  L+E+  +     +  T+++  TAL  AV     ++
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKI 268

Query: 133 VKIL 136
            ++L
Sbjct: 269 AELL 272

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 1e-13
 Identities = 52/235 (22%), Positives = 84/235 (35%), Gaps = 38/235 (16%)

Query: 54  KNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMT 113
            +G  + + E +    SL  + +    T LH A   GH+ IV FL++         +   
Sbjct: 12  YSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-----GVPVNDK 66

Query: 114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN 173
           ++   + LH A   G  ++VK L  +      + N+ G T L+ AA     E+ + LLE 
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGA-QVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 125

Query: 174 CTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILF 233
             +   +     TA+H AA     +                                IL 
Sbjct: 126 GANPDAKDHYEATAMHRAAAKGNLKMIH-----------------------------ILL 156

Query: 234 LDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
                  + D  G   LH A    ++ E K+L+      + IY  +    TPL V
Sbjct: 157 YYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ---GASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 1e-12
 Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 60  FIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKN 118
            I + L    + +  VN  G TPLH AA      I   L+E  A   A       ++ + 
Sbjct: 84  EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA------KDHYEA 137

Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
           TA+H A   GN++++ IL          ++  G T L++A +    E    L+    S+ 
Sbjct: 138 TAMHRAAAKGNLKMIHIL-LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY 196

Query: 179 HEGPNGKTALHAAAMH 194
            E    KT L  A   
Sbjct: 197 IENKEEKTPLQVAKGG 212

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.8 bits (164), Expect = 1e-13
 Identities = 42/248 (16%), Positives = 65/248 (26%), Gaps = 19/248 (7%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK 134
           V   GDT LHLA    H   + FL+  +  A  + + + N+   TALH A   G    V+
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFS--AGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGP----------NG 184
            L         +E        ++A   R       LL+   S   +              
Sbjct: 63  KLYAAGAGVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 185 KTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDH 244
            T+   AA+      +       +  R         G             +         
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 245 RGWNFLHYAMVSFKLHELKILLKNPLARSLIYEG------DNNGNTPLHVLAAIRPKEFF 298
              N          LH         +   L+  G         G TPL            
Sbjct: 182 ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA 241

Query: 299 KIKVRYDA 306
           ++   + A
Sbjct: 242 RLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 9e-09
 Identities = 47/249 (18%), Positives = 79/249 (31%), Gaps = 32/249 (12%)

Query: 41  NTILHINIISQKRKNGSTKFIGEMLKKC--PSLLLQVNAKGDTPLHLAAKFGHSNIVSFL 98
           +T LH+ +      +    F+  +L        L   N  G T LHLAA  G ++ V  L
Sbjct: 10  DTALHLAV-----IHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 99  IERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTS---- 154
                      + +     +TALH A          +L +  P +P   +    T     
Sbjct: 65  YAA-----GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119

Query: 155 ---------LYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE------N 199
                       +     +E      +    +  E  +G T LH A +H   E      +
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 200 DQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKL 259
                +  +     T LHLA     A  +E +L           + G   L  A++    
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNP 238

Query: 260 HELKILLKN 268
              ++L  +
Sbjct: 239 ILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 1/32 (3%)

Query: 75  VNAKGDTPLHLAAKFGHSNIVSFLIER-AKLA 105
               G TPL  A    +  +   L    A   
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 65.9 bits (159), Expect = 8e-13
 Identities = 42/236 (17%), Positives = 70/236 (29%), Gaps = 25/236 (10%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIERAK---LAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
             T LH  A    +     LI       +AA   +   + ++NT L  AV     ++V  
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 92

Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELL-----------------ENCTSVS 178
           L K   D               AA   +  MV  L                         
Sbjct: 93  LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 152

Query: 179 HEGPNGKTALHAAAMHFYFENDQTAADIADKDRK-MTALHLAAGQGHARTVETILFLDPK 237
           +EG +   +           +   AA    +  K  TALH AA   +   V+ ++     
Sbjct: 153 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 212

Query: 238 CYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIR 293
             +  D  G   +  A    ++  +  L++     + +   D   +T    LA   
Sbjct: 213 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ---GASVEAVDATDHTARQ-LAQAN 264

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.4 bits (129), Expect = 5e-09
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 55  NGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMT 113
             +   +  ++ +  S   + +  G TP+ LAA+ G   +V +LI++ A + A       
Sbjct: 197 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA------V 250

Query: 114 NNEKNTALHEAVCHGNVQVVKILTK 138
           +   +TA   A  + +  +V I  +
Sbjct: 251 DATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 53.6 bits (127), Expect = 8e-09
 Identities = 22/92 (23%), Positives = 38/92 (41%)

Query: 107 WQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEM 166
                    +  TALH A    N+ +VK L  +       +++ GKT + +AA+    E+
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 167 VIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
           V+ L++   SV        TA   A  + +  
Sbjct: 237 VMYLIQQGASVEAVDATDHTARQLAQANNHHN 268

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 13/91 (14%)

Query: 180 EGPNGKTALHAAAMHFYFEN---DQTAADIADKDRKMTALHLAAGQGHARTVETILFLDP 236
           E P     LH  A   Y       + + +I D     T LH  A    A   E ++  + 
Sbjct: 1   ESP---IKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 237 KCY-------ELVDHRGWNFLHYAMVSFKLH 260
           K           +D      L  A+++ +  
Sbjct: 58  KECIAAGADVNAMDCDENTPLMLAVLARRRR 88

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 4e-12
 Identities = 51/234 (21%), Positives = 83/234 (35%), Gaps = 15/234 (6%)

Query: 41  NTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIE 100
           N  LH               + E+L   PSLLLQ +  G  PLH +  F    I SFL+ 
Sbjct: 1   NYPLHQAC-----MENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 55

Query: 101 RAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE 160
           + +          +      +  +V +  V       +            G T L++A  
Sbjct: 56  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY-DRPLKPDLNKITNQGVTCLHLAVG 114

Query: 161 GRYSEMVIELLENCTSVSHEGPNGKTALHAAAMH-----FYFENDQTAADIADKDRK-MT 214
            ++ E+   L+EN  SV  +    +  LH AA                + +  +D++  T
Sbjct: 115 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 174

Query: 215 ALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKN 268
            L  A  +GH      ++      Y+LVD++G      A+        K  L N
Sbjct: 175 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.1 bits (149), Expect = 7e-12
 Identities = 28/218 (12%), Positives = 57/218 (26%), Gaps = 15/218 (6%)

Query: 80  DTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQ 139
           + PLH A        V  L+         ++   + +    LH +V     ++   L  +
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKP----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK 56

Query: 140 DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEN 199
             +    +                  + +        +  +                 + 
Sbjct: 57  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 116

Query: 200 DQTAADIADKDRKM---------TALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFL 250
               +    ++              LH AA  G  + +E +  L        D +GW  L
Sbjct: 117 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 176

Query: 251 HYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
            +A+         +L++   A       DN G     V
Sbjct: 177 FHALAEGHGDAAVLLVEKYGAE--YDLVDNKGAKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 7e-09
 Identities = 33/209 (15%), Positives = 61/209 (29%), Gaps = 12/209 (5%)

Query: 118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLEN---- 173
           N  LH+A        V+ L    P     +++ G+  L+ +   +  E+   LL      
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 174 -----CTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTV 228
                         +   ++    +     +     D+     +       A       V
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 229 ETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
              L  +     + D      LH A     L  +++     L +S +   D  G TPL  
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL--LCGLGKSAVNWQDKQGWTPLFH 178

Query: 289 LAAIRPKEFFKIKVRYDAGGNYGAVNKQN 317
             A    +   + V    G  Y  V+ + 
Sbjct: 179 ALAEGHGDAAVLLVE-KYGAEYDLVDNKG 206

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 5e-12
 Identities = 25/202 (12%), Positives = 58/202 (28%), Gaps = 24/202 (11%)

Query: 73  LQVNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQ 131
           + V+  G+TPLH      +  +V  L++  +       M  +   K          G  +
Sbjct: 101 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE 160

Query: 132 VVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIE----------LLENCTSVSHEG 181
            +            S N+     + + +         +          + +    +    
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 220

Query: 182 PNGKTALHAAAMHFYFE-------NDQTAADIADKDRK-MTALHLAAGQGHARTVETILF 233
              ++  +                    A  +  +D    T L++AA  G+   V+ +L 
Sbjct: 221 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 280

Query: 234 L--DPKCYELVDHRGWNFLHYA 253
              DP    + +  G   + + 
Sbjct: 281 YGADP---FIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.4 bits (150), Expect = 1e-11
 Identities = 46/300 (15%), Positives = 90/300 (30%), Gaps = 27/300 (9%)

Query: 17  GDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRK------NGSTKFIGEMLKKCPS 70
           G   TF  + TSD + S L          +N   QK K            I EM     +
Sbjct: 1   GPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNN 60

Query: 71  LLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNV 130
                N++G +           +++  + +        +    +   NT LH      N+
Sbjct: 61  DSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANL 120

Query: 131 QVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEG----PNGKT 186
           ++VK L K   +     +  G++ L  A +   +            +           +T
Sbjct: 121 ELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRT 179

Query: 187 ALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRG 246
            LH   +         AA    K      +     + +               +   +  
Sbjct: 180 ILHHIIITSGMTGCSAAA----KYYLDILMGWIVKKQNRPI------------QSGTNEK 223

Query: 247 WNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDA 306
            +  +      K   L+ L    +  +++   D+NG+T L++ A +         + Y A
Sbjct: 224 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 283

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.6 bits (122), Expect = 4e-08
 Identities = 20/140 (14%), Positives = 43/140 (30%), Gaps = 10/140 (7%)

Query: 63  EMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQM--------MRMTN 114
            +L      L+  ++   T LH           S   +                 ++   
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 220

Query: 115 NEKNTALHEAVCHGNVQVVKILTKQD--PDYPYSENKYGKTSLYMAAEGRYSEMVIELLE 172
           NEK +  ++        +++ L  +    +   +++  G T L +AA      +V  LL+
Sbjct: 221 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD 280

Query: 173 NCTSVSHEGPNGKTALHAAA 192
                     +G   +   A
Sbjct: 281 YGADPFIANKSGLRPVDFGA 300

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 1e-11
 Identities = 44/229 (19%), Positives = 82/229 (35%), Gaps = 12/229 (5%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
           GDTPLH+A   G+   V  L+        + + + NN + T LH AV      VV++L  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLF-QQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIEL---LENCTSVSHEGPNGKTALHAAAMHF 195
                   +      +         + +   L         +     +G TALH A    
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 196 YFENDQ-----TAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFL 250
             E  Q      A   A   +   +  + A + ++ ++  +L           + G + L
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 181

Query: 251 HYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFK 299
           H A     L  ++ L+++    +     + + +TPL V  + R  +  +
Sbjct: 182 HSASGRGLLPLVRTLVRS---GADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 6e-07
 Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 45/228 (19%)

Query: 41  NTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAK---GDTPLHLA----------- 86
           +T LHI +       G+   +  ++        +++       TPLHLA           
Sbjct: 4   DTPLHIAV-----VQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 58

Query: 87  ---------------------AKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAV 125
                                A    S      +  +       +   N +  TALH AV
Sbjct: 59  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 118

Query: 126 CHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
                + V++L ++  D    + K G++ L  A E     MV  LL++  +V+ +  +G 
Sbjct: 119 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 178

Query: 186 TALHAAAMHFYFENDQT----AADIADKDRK-MTALHLAAGQGHARTV 228
           +ALH+A+        +T     AD + K+    T L +A  +     +
Sbjct: 179 SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 60  FIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKN 118
            + ++L +  + +      G + LH A+  G   +V  L+   A  +        N   +
Sbjct: 158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL------KNCHND 211

Query: 119 TALHEAVCHGNVQVVK 134
           T L  A     + +++
Sbjct: 212 TPLMVARSRRVIDILR 227

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 1e-10
 Identities = 38/201 (18%), Positives = 67/201 (33%), Gaps = 14/201 (6%)

Query: 41  NTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAK---GDTPLHLAAKFGHSNIVSF 97
           ++ LH+ II     +       E++++    L  +N +     TPLHLA       I   
Sbjct: 3   DSFLHLAII-----HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 57

Query: 98  LIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYM 157
           L+        +  R             +    V      T        + N  G T L++
Sbjct: 58  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 117

Query: 158 AAEGRYSEMV-IELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTA----ADIADKDRK 212
           A+   Y  +V + +       + E  NG+TALH A      +         AD+     +
Sbjct: 118 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 177

Query: 213 -MTALHLAAGQGHARTVETIL 232
             +   L  G+   R  + + 
Sbjct: 178 GYSPYQLTWGRPSTRIQQQLG 198

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 82  PLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDP 141
            LHLA+  G+  IV  L+         +         TALH AV   N  +V +L K   
Sbjct: 114 CLHLASIHGYLGIVELLVSLG----ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 169

Query: 142 DYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGK 185
           D        G +   +      + +  +L +         P  +
Sbjct: 170 DV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 53  RKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRM 112
             +G    +  ++     +  Q    G T LHLA    + ++VS       L     +  
Sbjct: 119 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL-----LLKCGADVNR 173

Query: 113 TNNEKNTALHEAVCHGNVQVVKILTKQDPD 142
              +  +         + ++ + L +   +
Sbjct: 174 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 45/206 (21%), Positives = 66/206 (32%), Gaps = 16/206 (7%)

Query: 94  IVSFLIER-AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGK 152
           ++S L+ + A+L A       +    T+LH A         K L     D    +N    
Sbjct: 4   VISDLLAQGAELNA-----TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRT 58

Query: 153 TSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AADIAD 208
                 A        I L    T+++    +G T L  AA        +      ADI  
Sbjct: 59  PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA 118

Query: 209 KDRK-MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLK 267
            D    TALH AA   +   V  +L       +  D +    L  A         K LL 
Sbjct: 119 ADNSGKTALHWAAAVNNTEAVNILLM-HHANRDAQDDKDETPLFLAAREGSYEASKALLD 177

Query: 268 NPLARSLIYEGDNNGNTPLHVLAAIR 293
           N    +     D+    P   +A+ R
Sbjct: 178 N---FANREITDHMDRLPRD-VASER 199

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.4 bits (129), Expect = 2e-09
 Identities = 40/207 (19%), Positives = 73/207 (35%), Gaps = 35/207 (16%)

Query: 57  STKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLA----------- 105
           + + I ++L +   L   ++  G+T LHLAA+F  ++    L++    A           
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 60

Query: 106 ------------------AWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSE 147
                                 +    ++  T L  A       +V+ L   D D   + 
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAA 119

Query: 148 NKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----A 203
           +  GKT+L+ AA    +E V  LL +  +   +    +T L  AA    +E  +      
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 204 ADIADKDRK-MTALHLAAGQGHARTVE 229
           A+    D        +A+ + H   V 
Sbjct: 180 ANREITDHMDRLPRDVASERLHHDIVR 206

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.0 bits (123), Expect = 4e-08
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 64  MLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHE 123
            L       ++    G T LH+AA  G++ ++  LI+         + + + +  T LH 
Sbjct: 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-----RYDVNIKDYDGWTPLHA 238

Query: 124 AVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE 160
           A   G  +  +IL +   D   + NK G+T+  +A E
Sbjct: 239 AAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.6 bits (122), Expect = 5e-08
 Identities = 43/215 (20%), Positives = 73/215 (33%), Gaps = 11/215 (5%)

Query: 74  QVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVV 133
             N  G T LH A    + ++V FL+E         +   +NE    LH A   G + + 
Sbjct: 68  YANVDGLTALHQACIDDNVDMVKFLVEN-----GANINQPDNEGWIPLHAAASCGYLDIA 122

Query: 134 KILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM 193
           + L  Q        ++          E     +  E+      +       +  +   A 
Sbjct: 123 EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDAR 182

Query: 194 HFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYA 253
            +         D+       TALH+AA +G+   +  +L        + D+ GW  LH A
Sbjct: 183 QWLNSGHIN--DVRHAKSGGTALHVAAAKGYTEVL-KLLIQARYDVNIKDYDGWTPLHAA 239

Query: 254 MVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
               K    +IL++N      +   +  G T   V
Sbjct: 240 AHWGKEEACRILVEN---LCDMEAVNKVGQTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 107 WQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEM 166
                       TALH A   G  +V+K+L +   D    ++  G T L+ AA     E 
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEA 247

Query: 167 VIELLENCTSVSHEGPNGKTALHAAA 192
              L+EN   +      G+TA   A 
Sbjct: 248 CRILVENLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 8e-05
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

Query: 107 WQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEM 166
            Q           A  +      ++  +              K G T+L++AA   Y+E+
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV 214

Query: 167 VIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT----AADIADKDRK-MTALHLAA 220
           +  L++    V+ +  +G T LHAAA     E  +       D+   ++   TA  +A 
Sbjct: 215 LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 61  IGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIER-AKLAAWQMMRMTNNEKNT 119
           + ++L +    +   +  G TPLH AA +G       L+E    + A       N    T
Sbjct: 214 VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA------VNKVGQT 267

Query: 120 ALHEAVCHGNVQVVKILTKQD 140
           A   A       + ++  KQ+
Sbjct: 268 AFDVADEDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 28/188 (14%), Positives = 54/188 (28%), Gaps = 6/188 (3%)

Query: 100 ERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAA 159
           +       +       +       A   G+ + V  L ++  D     N  G T+L+ A 
Sbjct: 23  DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQAC 81

Query: 160 EGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLA 219
                +MV  L+EN  +++     G   LHAAA   Y +  +           + +    
Sbjct: 82  IDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT 141

Query: 220 AGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGD 279
                         ++      V+ +G +         ++                    
Sbjct: 142 PLDIAEEE-----AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196

Query: 280 NNGNTPLH 287
            +G T LH
Sbjct: 197 KSGGTALH 204

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 3e-07
 Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 10/159 (6%)

Query: 78  KGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILT 137
           +    L  AA  G    V  L+ R  +         N    TAL   +       +++L 
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELV----HPDALNRFGKTALQVMMFGSTAIALELLK 56

Query: 138 KQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYF 197
           +         +               +  V+        V+     G   +H A    + 
Sbjct: 57  QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD--VNVPDGTGALPIHLAVQEGHT 114

Query: 198 ENDQTAADIADKDRK----MTALHLAAGQGHARTVETIL 232
                 A  +D  R+    +T L LA  +G    V+ + 
Sbjct: 115 AVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 76  NAKGDTPLHLAAKFGHSNIVSFLIE 100
           +A+G TPL LA + G  ++V  L  
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQG 154

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (110), Expect = 3e-07
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 12/154 (7%)

Query: 81  TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQD 140
             L  AA+ G  + V  L+          +  +                +        + 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLL-------RA 56

Query: 141 PDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE-- 198
                +  K  +T L+MAA   ++ +V  LL++   V+ +     TALH A  H + E  
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 199 --NDQTAADIADKDRK-MTALHLAAGQGHARTVE 229
               +  AD+  + +   TA  ++   G+    E
Sbjct: 117 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 33/155 (21%), Positives = 50/155 (32%), Gaps = 8/155 (5%)

Query: 116 EKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCT 175
           +    L EA   G    V+IL        ++ +  G + L++AA+  +      LL    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAP--FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 176 SVSHEGPNGKTALHAAAMH-----FYFENDQTAADIADKDRKMTALHLAAGQGHARTVET 230
           S        +T LH AA               A   A    KMTALH A    H   VE 
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 231 ILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKIL 265
           ++                    ++ +      +IL
Sbjct: 119 LIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.7 bits (101), Expect = 3e-06
 Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 6/114 (5%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
            D     A K G  + V   + + +     +          A    +             
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL------L 55

Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAA 192
                  + +K+  T L  A    +   V  LL      + +GP+G TAL A  
Sbjct: 56  LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD 109

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 5e-06
 Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 13/132 (9%)

Query: 114 NNEKNTALHEAVCHGNVQVVKILTKQDPD-----YPYSENKYGKTSLYMAA---EGRYSE 165
              K  +L EAV   ++  +        D        + ++  +T+L++A    +     
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 166 MVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQT-----AADIADKDRKMTALHLAA 220
           +V  L++N  ++  +   G TALH   +    E  +      A+     +   T L +A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 221 GQGHARTVETIL 232
              H    E + 
Sbjct: 123 RLKHEHCEELLT 134

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 22/156 (14%), Positives = 47/156 (30%), Gaps = 22/156 (14%)

Query: 146 SENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGP------NGKTALHAAAMHFYFEN 199
           ++      SL  A + R    +++   +   ++ + P        +TALH A       +
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 200 -------DQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHY 252
                   Q + ++  +  K +                +L       E+ +  G   L  
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 253 AMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHV 288
           A      H  ++L +               N+ +HV
Sbjct: 121 AKRLKHEHCEELLTQA---------LSGRFNSHVHV 147

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 31/102 (30%)

Query: 68  CPSLLLQVNAKGDTPLHLAAKF---GHSNIVSFLIERAKLAAWQMMRM------------ 112
               L   +   +T LHLA +       +IV FL++ +     Q  +             
Sbjct: 34  EKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 93

Query: 113 ----------------TNNEKNTALHEAVCHGNVQVVKILTK 138
                            N    T L  A    +    ++LT+
Sbjct: 94  AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 135

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 3e-05
 Identities = 17/157 (10%), Positives = 32/157 (20%), Gaps = 11/157 (7%)

Query: 81  TPLHLAAKFGHSNIVSFLIER-----AKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKI 135
             L  AA  G    ++ L++      A+    +         N  +   +          
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 136 LTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHF 195
                     +       +L    E +    + +   N              +     H 
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 196 YFENDQTAADIADKDRKMTALHLAAGQGHARTVETIL 232
                             TA  LA   G    V  + 
Sbjct: 123 ASNVGHRNHK------GDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 45  HINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIER 101
               +    K G  + +  ++K   S +   N KGDT   LA  +G + +VS +   
Sbjct: 99  GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 5/154 (3%)

Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
             L  A   G+++ +  L + + +   ++N +G+T+L +   G        LL       
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 179 HEGPNGKTALHAAAM----HFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFL 234
            +         AA            +  A    + +     LHLAA +GH R VE ++  
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 235 DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKN 268
                   +H+G      A +  +   + ++  N
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 2e-04
 Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 4/118 (3%)

Query: 119 TALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVS 178
             L  A   G V+ V+ L +   +     +   +    M         ++ L     + +
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 179 HEGPNGKTALHAAAMHFYFENDQTAADIADKDRKM----TALHLAAGQGHARTVETIL 232
                 +    AA   F           A  D +       + LA   GH      + 
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 0.001
 Identities = 10/120 (8%), Positives = 22/120 (18%), Gaps = 6/120 (5%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTK 138
               L  AA  G    V  L+E                +   +  A     + +      
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 139 QDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE 198
                  +   +                          +      G+  +  A    + +
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHR------AGARLDVRDAWGRLPVDLAEELGHRD 116

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.004
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 79  GDTPLHLAAKFGHSNIVSFLIERA 102
           G  P+ LA + GH ++  +L   A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAAA 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	364
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.98
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.83

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-47  Score=340.11  Aligned_cols=308  Identities=21%  Similarity=0.218  Sum_probs=263.7

Q ss_pred             hhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHH
Q 046373            8 PNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAA   87 (364)
Q Consensus         8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~   87 (364)
                      +|||.||..|++++|++|+++| .+....+..|.||||+|  +..|+.+++++|+++    +++++..+..|.||||+|+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g-~~in~~d~~g~TpL~~A--~~~g~~~iv~~Ll~~----gadi~~~~~~g~t~L~~A~   74 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRG-ASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAA   74 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTT-CCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCC-CCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHC----cCCCCCCCCCCCCHHHHHH
Confidence            7999999999999999999998 77777888999999999  999999999999997    8899999999999999999


Q ss_pred             HcCCHHHHHHHHHHhhHH----------------------------HhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 046373           88 KFGHSNIVSFLIERAKLA----------------------------AWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQ  139 (364)
Q Consensus        88 ~~~~~~~v~~Ll~~~~~~----------------------------~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~  139 (364)
                      ..|+.+++++|+......                            ........+..+.++++.|+..++.+++++|+++
T Consensus        75 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~  154 (408)
T d1n11a_          75 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER  154 (408)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc
Confidence            999999999999876541                            0011244567889999999999999999999999


Q ss_pred             CCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhh---------------------
Q 046373          140 DPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFE---------------------  198 (364)
Q Consensus       140 ~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~---------------------  198 (364)
                      +.++. ..+..|.+||++|+..++.+++++|+++|++++..+..|.||++.+......+                     
T Consensus       155 ~~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t  233 (408)
T d1n11a_         155 DAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVT  233 (408)
T ss_dssp             TCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCC
Confidence            98865 67778999999999999999999999999999999999999998887651100                     


Q ss_pred             ------------cchhhh-----hhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHH
Q 046373          199 ------------NDQTAA-----DIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHE  261 (364)
Q Consensus       199 ------------~~~~~~-----~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~  261 (364)
                                  ......     .......|.||++.|+..++.+++++|+++|.+ ++..+..+.||||.++..++.++
T Consensus       234 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~~~~~~~  312 (408)
T d1n11a_         234 PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKL  312 (408)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHH
T ss_pred             HHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcccCccee
Confidence                        000000     001224677899999999999999999999988 47778889999999999999999


Q ss_pred             HHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhhhccc
Q 046373          262 LKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSR  329 (364)
Q Consensus       262 ~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~~~~  329 (364)
                      ++.+++.   ++++|.+|..|.||||+|++.|+  ...+.+|+++|++++.+|..|+||||+|+..+.
T Consensus       313 ~~~ll~~---g~~in~~d~~G~T~Lh~A~~~g~--~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~  375 (408)
T d1n11a_         313 VKFLLQH---QADVNAKTKLGYSPLHQAAQQGH--TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY  375 (408)
T ss_dssp             HHHHHHT---TCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             eeeeccc---cccccccCCCCCCHHHHHHHcCC--HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            9999997   89999999999999999999999  667788889999999999999999999976654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-38  Score=281.66  Aligned_cols=300  Identities=25%  Similarity=0.249  Sum_probs=240.9

Q ss_pred             CCCChhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHH------------------
Q 046373            4 ISIYPNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEML------------------   65 (364)
Q Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l------------------   65 (364)
                      ....+|||+|++.|+.+++++|+++| .+....+.+|.||||+|  +..|+.+++++|+...                  
T Consensus        31 ~~g~TpL~~A~~~g~~~iv~~Ll~~g-adi~~~~~~g~t~L~~A--~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  107 (408)
T d1n11a_          31 VKVETPLHMAARAGHTEVAKYLLQNK-AKVNAKAKDDQTPLHCA--ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA  107 (408)
T ss_dssp             SCCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTSCCHHHHH--HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHhhhccccccccccchhhhhh
Confidence            34568999999999999999999998 77778888999999999  9999999999988641                  


Q ss_pred             -----------hcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHH
Q 046373           66 -----------KKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK  134 (364)
Q Consensus        66 -----------~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~  134 (364)
                                 ...+......+..+.++++.|+..++.+++++|++++..     ++..+..|.+|||+|+..|+.++++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~-----~~~~~~~~~~~L~~A~~~~~~~~~~  182 (408)
T d1n11a_         108 REGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-----PNAAGKNGLTPLHVAVHHNNLDIVK  182 (408)
T ss_dssp             HHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCSSCCCHHHHHHHTTCHHHHH
T ss_pred             hhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC-----CCcCCCcCchHHHHHHHcCCHHHHH
Confidence                       112233455667788999999999999999999988865     6777888899999999999999999


Q ss_pred             HHHhcCCCCCC--------------------------------CCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 046373          135 ILTKQDPDYPY--------------------------------SENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGP  182 (364)
Q Consensus       135 ~Ll~~~~~~~~--------------------------------~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~  182 (364)
                      +|+++|++++.                                ..+..+.||+++|+..++.++++++.+.+...+..+.
T Consensus       183 ~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  262 (408)
T d1n11a_         183 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK  262 (408)
T ss_dssp             HHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT
T ss_pred             HHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccC
Confidence            99988776431                                2233566777778888888888888888888888888


Q ss_pred             CCCChHHHHHHhhhhhcchhhhhh-----hccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcC
Q 046373          183 NGKTALHAAAMHFYFENDQTAADI-----ADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSF  257 (364)
Q Consensus       183 ~~~~~l~~a~~~~~~~~~~~~~~~-----~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~  257 (364)
                      .|.+|++.++.....+....+...     .....+.||||.++..++.++++++++.|.+ ++.+|..|+||||+|+..|
T Consensus       263 ~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~-in~~d~~G~T~Lh~A~~~g  341 (408)
T d1n11a_         263 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQG  341 (408)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccccc-ccccCCCCCCHHHHHHHcC
Confidence            888888888887444443333221     2224678999999999999999999999998 6889999999999999999


Q ss_pred             CHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeeh-hhhcccCCccccccc
Q 046373          258 KLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKI-KVRYDAGGNYGAVNK  315 (364)
Q Consensus       258 ~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~-~ll~~~~~~~~~~n~  315 (364)
                      +.+++++|+++   |+++|.+|..|.||||+|++.|+.+++.+ ..+.+.+.+....|.
T Consensus       342 ~~~iv~~Ll~~---GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~  397 (408)
T d1n11a_         342 HTDIVTLLLKN---GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK  397 (408)
T ss_dssp             CHHHHHHHHHT---TCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC----
T ss_pred             CHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhcccccccccc
Confidence            99999999998   99999999999999999999999776544 344556666544444

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-37  Score=259.79  Aligned_cols=229  Identities=23%  Similarity=0.176  Sum_probs=168.7

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCc
Q 046373           73 LQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGK  152 (364)
Q Consensus        73 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~  152 (364)
                      ...+++|+||||+|+..|+.+++++|++++++.  ..++.++..|.||||+|+..|+.+++++|+++|++++ ..+..|.
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~--~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~-~~d~~g~   79 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH--EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGH   79 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS--GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCc--ccccCcCCCCCCccchHHhhccccccccccccccccc-ccccccc
Confidence            346778888888888888888888888877543  2256677788888888888888888888888887765 5677788


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC----------CCChHHHHHHh---------hhhhcchhhhhhhccCCCc
Q 046373          153 TSLYMAAEGRYSEMVIELLENCTSVSHEGPN----------GKTALHAAAMH---------FYFENDQTAADIADKDRKM  213 (364)
Q Consensus       153 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----------~~~~l~~a~~~---------~~~~~~~~~~~~~~~~~~~  213 (364)
                      ||||+|+..++.+++++|++.+.........          ..+....+...         .................|.
T Consensus        80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~  159 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence            8888888888888888887765432211110          00000000000         0011111111122345789


Q ss_pred             hHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcC
Q 046373          214 TALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIR  293 (364)
Q Consensus       214 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~  293 (364)
                      ||||+|+..++.+++++|++++.+.....+..|.||||+|+..++.+++++|+++   |++++.+|..|.||||+|+..+
T Consensus       160 TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~---gadin~~d~~g~t~L~~A~~~~  236 (255)
T d1oy3d_         160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGSALLRP  236 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHTSS
T ss_pred             ccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHCC
Confidence            9999999999999999999999987666678999999999999999999999998   8999999999999999999999


Q ss_pred             CcceeehhhhcccCCc
Q 046373          294 PKEFFKIKVRYDAGGN  309 (364)
Q Consensus       294 ~~~~~~~~ll~~~~~~  309 (364)
                      +  ...+.+|+++||+
T Consensus       237 ~--~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         237 N--PILARLLRAHGAP  250 (255)
T ss_dssp             C--HHHHHHHHHTTCC
T ss_pred             C--HHHHHHHHHcCCC
Confidence            9  6667778889996

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=249.43  Aligned_cols=206  Identities=26%  Similarity=0.311  Sum_probs=109.6

Q ss_pred             CchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcH
Q 046373           41 NTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA  120 (364)
Q Consensus        41 ~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~  120 (364)
                      .++|+.+  ++.|+.+.++.+++   ..+..++..|..|+||||+|+..|+.+++++|++.+..     ....+..+.++
T Consensus         4 ~~~~~~~--a~~G~~~~v~~~l~---~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~-----~~~~~~~~~~~   73 (223)
T d1uoha_           4 NLMVCNL--AYSGKLEELKESIL---ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-----VNDKDDAGWSP   73 (223)
T ss_dssp             SSHHHHH--HHTTCHHHHHHHHH---HCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-----SCCCCTTCCCH
T ss_pred             HHHHHHH--HHhCCHHHHHHHHH---hCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccc-----ccccccccccc
Confidence            3445555  55555555544443   23444555555555555555555555555555555433     23334445555


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcc
Q 046373          121 LHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEND  200 (364)
Q Consensus       121 l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  200 (364)
                      ++.++..++.+++++|++++++++ ..+..|.||||+|+..|+.+++++|+++|++++..+.                  
T Consensus        74 ~~~~~~~~~~~i~~~Ll~~~~d~~-~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~------------------  134 (223)
T d1uoha_          74 LHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH------------------  134 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT------------------
T ss_pred             ccccccccccchhHHHhccCceeE-eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCC------------------
Confidence            555555555555555555555433 4455555555555555555555555555555543332                  


Q ss_pred             hhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCC
Q 046373          201 QTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDN  280 (364)
Q Consensus       201 ~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~  280 (364)
                                .+.||||.|+..++.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|+++   |++++.+|.
T Consensus       135 ----------~~~t~L~~a~~~~~~~~~~~L~~~~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~---Gad~~~~d~  200 (223)
T d1uoha_         135 ----------YEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQ---GASIYIENK  200 (223)
T ss_dssp             ----------TSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCT
T ss_pred             ----------CCCccchhhhhcCCcchhhhhccccce-eeeccCCCCceeccccccCcHHHHHHHHHC---CCCCCCCCC
Confidence                      234444455555555555555555555 355555555555555555555555555554   555555555


Q ss_pred             CCCcHHHHH
Q 046373          281 NGNTPLHVL  289 (364)
Q Consensus       281 ~g~t~L~~A  289 (364)
                      .|+||||+|
T Consensus       201 ~g~tpl~~A  209 (223)
T d1uoha_         201 EEKTPLQVA  209 (223)
T ss_dssp             TSCCHHHHC
T ss_pred             CCCCHHHHH
Confidence            555555554

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-36  Score=245.57  Aligned_cols=214  Identities=23%  Similarity=0.206  Sum_probs=190.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHH
Q 046373           79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMA  158 (364)
Q Consensus        79 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A  158 (364)
                      +.+.|+.++..|+.+.|+.+++....    .++.+|..|+||||+|+..|+.+++++|+..+.... ..+..+.++++.+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~----~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~   77 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKS----LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIA   77 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGG----GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTCCCHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCC----cCcCcCCCCCCHHHHHHHhhhhcccccccccccccc-ccccccccccccc
Confidence            46889999999999999888877653    278899999999999999999999999999988765 5566789999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcc
Q 046373          159 AEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKC  238 (364)
Q Consensus       159 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~  238 (364)
                      +..++.+++++|+++|++++..+.                            .|.||||+|+..|+.+++++|+++|.+ 
T Consensus        78 ~~~~~~~i~~~Ll~~~~d~~~~d~----------------------------~g~tpL~~A~~~~~~e~~~~Ll~~g~d-  128 (223)
T d1uoha_          78 ASAGRDEIVKALLGKGAQVNAVNQ----------------------------NGCTPLHYAASKNRHEIAVMLLEGGAN-  128 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCT----------------------------TCCCHHHHHHHHTCHHHHHHHHHTTCC-
T ss_pred             ccccccchhHHHhccCceeEeeCC----------------------------CCCchhhHHHHcCCHHHHHHHHHCCCC-
Confidence            999999999999999999876655                            566778888888999999999999998 


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCC
Q 046373          239 YELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNV  318 (364)
Q Consensus       239 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~  318 (364)
                      ++..+..|.||||+|+..++.++++.|.+.   +.+++.+|..|+||||+|+..|+  ...+.+|+++|++++.+|.+|+
T Consensus       129 ~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~---~~~i~~~d~~g~TpL~~Aa~~g~--~~~v~~LL~~Gad~~~~d~~g~  203 (223)
T d1uoha_         129 PDAKDHYEATAMHRAAAKGNLKMIHILLYY---KASTNIQDTEGNTPLHLACDEER--VEEAKLLVSQGASIYIENKEEK  203 (223)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTCCCHHHHHHHTTC--HHHHHHHHHTTCCSCCCCTTSC
T ss_pred             CCCcCCCCCccchhhhhcCCcchhhhhccc---cceeeeccCCCCceeccccccCc--HHHHHHHHHCCCCCCCCCCCCC
Confidence            578899999999999999999999999987   88999999999999999999999  5556667789999999999999


Q ss_pred             chhHHhhhcccce
Q 046373          319 SVTDVLIYGSREL  331 (364)
Q Consensus       319 t~l~~a~~~~~~~  331 (364)
                      ||||+|..+..++
T Consensus       204 tpl~~A~~~~~~i  216 (223)
T d1uoha_         204 TPLQVAKGGLGLI  216 (223)
T ss_dssp             CHHHHCCTTHHHH
T ss_pred             CHHHHHHCCCHHH
Confidence            9999996555443

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-35  Score=253.87  Aligned_cols=269  Identities=19%  Similarity=0.159  Sum_probs=226.4

Q ss_pred             CChhHHHHHhcCChHHhhhccCChhHHHh-hhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHH
Q 046373            6 IYPNFFNAAAAGDAETFKRNTTSDEIESL-LTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLH   84 (364)
Q Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~   84 (364)
                      -.+.|+.|++.|++++|++|+++| .+.. ..+..|.||||+|  +..|+.+++++|++.    +......+..+.+|.+
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G-~din~~~~~~g~tpL~~A--~~~~~~eiv~~L~~~----~~~~~~~~~~~~~~~~   77 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNA--VQMSREDIVELLLRH----GADPVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCC-CCcCccCCCCCCCHHHHH--HHcCCHHHhhhhccc----cccccccccccchhhH
Confidence            357899999999999999999998 6554 4445799999999  999999999999886    6677778888999999


Q ss_pred             HHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC---------CCCcCCchHH
Q 046373           85 LAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPY---------SENKYGKTSL  155 (364)
Q Consensus        85 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~---------~~~~~~~t~l  155 (364)
                      .|+..+..+...++++....     ....+..+.++++.|+..++.+.++.++....+...         .....|.|||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  152 (285)
T d1wdya_          78 LAAIAGSVKLLKLFLSKGAD-----VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL  152 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-----TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred             HHhhcCCccccchhhhhccc-----ccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHH
Confidence            99999999999999988754     455678899999999999999999999987655332         1233689999


Q ss_pred             HHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhc
Q 046373          156 YMAAEGRYSEMVIELLEN-CTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFL  234 (364)
Q Consensus       156 ~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~  234 (364)
                      |+|+.+|+.+++++|++. |++++..+..+.+++..+..                        .+...+..+++++|+++
T Consensus       153 ~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~------------------------~~~~~~~~~i~~~Li~~  208 (285)
T d1wdya_         153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL------------------------SSDDSDVEAITHLLLDH  208 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHH------------------------CSCTTTHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccc------------------------cccchHHHHHHHHHHHC
Confidence            999999999999999975 78888888777766554332                        12223445789999999


Q ss_pred             CCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccc
Q 046373          235 DPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVN  314 (364)
Q Consensus       235 ~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n  314 (364)
                      |++ ++.++..|.||||+|+..++.+++++|++.  .+++++.+|..|.||||+|++.|+  ...+.+|+++||+++.+|
T Consensus       209 ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~--~g~din~~d~~G~TpL~~A~~~~~--~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         209 GAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ--EHIEINDTDSDGKTALLLAVELKL--KKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             TCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHS--SSCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHHHHSSCSCCSS
T ss_pred             CCC-CCccCCCCCCccchhhhcCcHHHHHHHHHc--CCCCCcCCCCCCCCHHHHHHHcCC--HHHHHHHHHCCCCCCccc
Confidence            999 588899999999999999999999999975  388999999999999999999999  667778889999998877


Q ss_pred             c
Q 046373          315 K  315 (364)
Q Consensus       315 ~  315 (364)
                      .
T Consensus       284 ~  284 (285)
T d1wdya_         284 L  284 (285)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-35  Score=241.64  Aligned_cols=227  Identities=24%  Similarity=0.236  Sum_probs=170.2

Q ss_pred             CchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcH
Q 046373           41 NTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTA  120 (364)
Q Consensus        41 ~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~  120 (364)
                      .+|||+|  +..|+.++++.|++   ..+.+++.+|.+|+||||+|+..|+.+++++|+++++++.  .....+..|.+|
T Consensus         1 n~pLh~A--~~~g~~~~v~~Ll~---~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~--~~~~~~~~~~~~   73 (229)
T d1ixva_           1 NYPLHQA--CMENEFFKVQELLH---SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN--LDDYPDDSGWTP   73 (229)
T ss_dssp             CCHHHHH--HHHTCHHHHHHHHH---HCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCC--GGGCCCTTSCCH
T ss_pred             CHhHHHH--HHcCCHHHHHHHHH---cCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccc--cccccccccccc
Confidence            3688888  88888888887766   3456777888888888888888888888888888776531  134556778888


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCC-CCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhc
Q 046373          121 LHEAVCHGNVQVVKILTKQDPDY-PYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFEN  199 (364)
Q Consensus       121 l~~a~~~~~~e~v~~Ll~~~~~~-~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~  199 (364)
                      +|+++..+..++++.++..+... ....+..+.||++.++..++.+++++|++.|.+.+..+.                 
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------------  136 (229)
T d1ixva_          74 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK-----------------  136 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-----------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCC-----------------
Confidence            88888888888888877776543 224555677888888888888888888888877654443                 


Q ss_pred             chhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCC
Q 046373          200 DQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGD  279 (364)
Q Consensus       200 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d  279 (364)
                                 .|.||||.|+..|+.+++++|++.+...++.+|..|+||||+|+..|+.+++++|++.  .|++++.+|
T Consensus       137 -----------~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~--~gad~~~~d  203 (229)
T d1ixva_         137 -----------FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK--YGAEYDLVD  203 (229)
T ss_dssp             -----------TSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH--HCCCSCCCC
T ss_pred             -----------CCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHh--cCCCCCCcC
Confidence                       4667777777778888888888887666777888888888888888888888888853  277888888


Q ss_pred             CCCCcHHHHHHhcCCcceeehhhhcccCCc
Q 046373          280 NNGNTPLHVLAAIRPKEFFKIKVRYDAGGN  309 (364)
Q Consensus       280 ~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~  309 (364)
                      ..|.||||+|+..     ....+|+++|+|
T Consensus       204 ~~g~t~l~~A~~~-----~~~~~Ll~~g~d  228 (229)
T d1ixva_         204 NKGAKAEDVALNE-----QVKKFFLNNVVD  228 (229)
T ss_dssp             TTSCCTGGGCSCH-----HHHHHHHHHCCC
T ss_pred             CCCCCHHHHHhhH-----HHHHHHHHcCCC
Confidence            8888888887642     245677777775

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=7.6e-35  Score=247.40  Aligned_cols=264  Identities=16%  Similarity=0.134  Sum_probs=202.6

Q ss_pred             hhHHHHHhcC-ChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHH----hcCCccccccCCCCCcH
Q 046373            8 PNFFNAAAAG-DAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEML----KKCPSLLLQVNAKGDTP   82 (364)
Q Consensus         8 ~~l~~A~~~g-~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l----~~~~~~~~~~~~~g~t~   82 (364)
                      +|||.+++.+ +.++++.|.+.+ ++. ..+..|.||||+|  +..|+.+++++|+...    ...|++++..|.+|+||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~-~n~-~~~~~g~T~Lh~A--~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~Tp   77 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRES-VNI-IDPRHNRTVLHWI--ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP   77 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTT-TTT-CCCSSCCCHHHHH--HCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcC-CCc-CCCCCCccHHHHH--HHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCee
Confidence            5677555555 445554554544 654 3333799999999  9999999999987652    23478899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCC--CCCCCCCcCCchHHHHHHh
Q 046373           83 LHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDP--DYPYSENKYGKTSLYMAAE  160 (364)
Q Consensus        83 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~--~~~~~~~~~~~t~l~~A~~  160 (364)
                      ||+|+..|+.++|++|+++|++     ++..+..|.|||++|+..++.++++++.....  ......+..+.++.+.+..
T Consensus        78 Lh~A~~~g~~~iv~~Ll~~Gad-----~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (277)
T d2fo1e1          78 LMLAVLARRRRLVAYLMKAGAD-----PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH  152 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-----SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred             eccccccccccccccccccccc-----cccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHh
Confidence            9999999999999999999976     67889999999999999999999998876532  1122456678899999888


Q ss_pred             cCCH---HHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCc
Q 046373          161 GRYS---EMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPK  237 (364)
Q Consensus       161 ~~~~---~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~  237 (364)
                      .+..   ..+..+.+..........                    .........+.||||.++..++.+++++++.....
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~  212 (277)
T d2fo1e1         153 NEGRDQVASAKLLVEKGAKVDYDGA--------------------ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS  212 (277)
T ss_dssp             SCSTTHHHHHHHHHHHTCCSSCCSG--------------------GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC
T ss_pred             ccccccccccccccccccccccccc--------------------ccccccccCCCCccccccccccccccccccccccc
Confidence            7653   344455544332211100                    11122335789999999999999999987765555


Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcc
Q 046373          238 CYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYD  305 (364)
Q Consensus       238 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~  305 (364)
                      ..+..|..|+||||+|+..|+.+++++|+++   |++++.+|..|.||||+|++.|+  ..++.+|.+
T Consensus       213 ~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~---gadin~~d~~G~T~L~~A~~~~~--~~iv~lL~~  275 (277)
T d2fo1e1         213 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNH--HNIVDIFDR  275 (277)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTC--HHHHHHHHT
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHcCC--HHHHHHHHH
Confidence            5678899999999999999999999999998   99999999999999999999999  444445443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.8e-35  Score=244.05  Aligned_cols=198  Identities=23%  Similarity=0.182  Sum_probs=141.7

Q ss_pred             ccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCC
Q 046373           38 QTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEK  117 (364)
Q Consensus        38 ~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g  117 (364)
                      .+|.||||+|  +++|+.+++++|+++ ......++..|..|.||||+|+..|+.+++++|+++|++     ++..+..|
T Consensus         7 ~~G~t~Lh~A--~~~~~~~~v~~Ll~~-~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-----i~~~d~~g   78 (255)
T d1oy3d_           7 EDGDTALHLA--VIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-----VLVAERGG   78 (255)
T ss_dssp             TTCCCHHHHH--HHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----SSCCCTTS
T ss_pred             cCCCCHHHHH--HHcCCHHHHHHHHHc-CCCcccccCcCCCCCCccchHHhhccccccccccccccc-----cccccccc
Confidence            3667777777  777777777777664 112233556666677777777777777777777776654     56666677


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCC----------------------------------------------CCCCCcCC
Q 046373          118 NTALHEAVCHGNVQVVKILTKQDPDY----------------------------------------------PYSENKYG  151 (364)
Q Consensus       118 ~t~l~~a~~~~~~e~v~~Ll~~~~~~----------------------------------------------~~~~~~~~  151 (364)
                      .||||+|+..++.+++++|++.....                                              ....+..|
T Consensus        79 ~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g  158 (255)
T d1oy3d_          79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (255)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             chhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccC
Confidence            77777777777777777666543221                                              11344556


Q ss_pred             chHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHH
Q 046373          152 KTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETI  231 (364)
Q Consensus       152 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~L  231 (364)
                      .||||+|+..++.+++++|++.+++.+..                           ....|.||||+|+..|+.+++++|
T Consensus       159 ~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~---------------------------~~~~g~TpL~~A~~~~~~~~v~~L  211 (255)
T d1oy3d_         159 HTPLHVAVIHKDAEMVRLLRDAGADLNKP---------------------------EPTCGRTPLHLAVEAQAASVLELL  211 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCC---------------------------CTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccccccccchhccccccccc---------------------------ccccccccccccccccHHHHHHHH
Confidence            67777777777777777777666554321                           234688999999999999999999


Q ss_pred             HhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccc
Q 046373          232 LFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSL  274 (364)
Q Consensus       232 l~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~  274 (364)
                      +++|++ ++.+|..|+||||+|+..++.+++++|+++   |++
T Consensus       212 l~~gad-in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~---Ga~  250 (255)
T d1oy3d_         212 LKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAH---GAP  250 (255)
T ss_dssp             HHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHT---TCC
T ss_pred             HHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHc---CCC
Confidence            999988 588999999999999999999999999998   664

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-33  Score=231.11  Aligned_cols=211  Identities=19%  Similarity=0.157  Sum_probs=184.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCcCCchHHHH
Q 046373           80 DTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYP--YSENKYGKTSLYM  157 (364)
Q Consensus        80 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~--~~~~~~~~t~l~~  157 (364)
                      +||||+||..|+.++|+.|++....    .++.+|.+|.||||+|+..|+.+++++|+++|+++.  ...+..|.+|+++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~----~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~   76 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPS----LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI   76 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGG----GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCC----cccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccc
Confidence            4899999999999999999987653    278899999999999999999999999999988754  3466789999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCc
Q 046373          158 AAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPK  237 (364)
Q Consensus       158 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~  237 (364)
                      ++..+..++++.++..+...+...                          ....+.++++.++..++.+++++|+..+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~  130 (229)
T d1ixva_          77 ACSVGNLEVVKSLYDRPLKPDLNK--------------------------ITNQGVTCLHLAVGKKWFEVSQFLIENGAS  130 (229)
T ss_dssp             HHHHTCHHHHHHHHSSSSCCCTTC--------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cccccccccccccccccccccccc--------------------------cccccccccccccccchhhhhhhhhhhccc
Confidence            999999999999999886654221                          223578899999999999999999999988


Q ss_pred             ccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcc-cCCcccccccC
Q 046373          238 CYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYD-AGGNYGAVNKQ  316 (364)
Q Consensus       238 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~-~~~~~~~~n~~  316 (364)
                       .+..|..|+||||+|+..|+.++++.|++.  ...+++.+|..|+||||+|+..|+  ...+.+|++ .|++++.+|.+
T Consensus       131 -~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~--~~~~in~~d~~g~TpLh~A~~~~~--~~~v~~Ll~~~gad~~~~d~~  205 (229)
T d1ixva_         131 -VRIKDKFNQIPLHRAASVGSLKLIELLCGL--GKSAVNWQDKQGWTPLFHALAEGH--GDAAVLLVEKYGAEYDLVDNK  205 (229)
T ss_dssp             -SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--TCCCSCCCCTTSCCHHHHHHHTTC--HHHHHHHHHHHCCCSCCCCTT
T ss_pred             -ccccCCCCCCccchhhhccccccccccccc--ccccccccccccCCchhhhccccc--HHHHHHHHHhcCCCCCCcCCC
Confidence             477899999999999999999999999987  246789999999999999999999  555556665 59999999999


Q ss_pred             CCchhHHhh
Q 046373          317 NVSVTDVLI  325 (364)
Q Consensus       317 g~t~l~~a~  325 (364)
                      |+||||+|+
T Consensus       206 g~t~l~~A~  214 (229)
T d1ixva_         206 GAKAEDVAL  214 (229)
T ss_dssp             SCCTGGGCS
T ss_pred             CCCHHHHHh
Confidence            999999996

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=8.4e-34  Score=242.76  Aligned_cols=235  Identities=22%  Similarity=0.134  Sum_probs=151.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHH
Q 046373           79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMA  158 (364)
Q Consensus        79 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A  158 (364)
                      +.|+|+.||..|+.++|++|+++|++     ++..|.+|.||||+|+..|+.+++++|++++.+.. ..+..+.+||++|
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gad-----vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~-~~~~~~~~~L~~a  113 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGAD-----INYANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAA  113 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCC-----TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCC-----CCccCCCCCcHHHHHHhcCCceeeeeecccccccc-ccccccccccccc
Confidence            34666666666666666666666654     55666666666666666666666666666666543 4455566666666


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcc
Q 046373          159 AEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKC  238 (364)
Q Consensus       159 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~  238 (364)
                      +..++.+++++|+++|+..+..+..+.+++++|+.....+........... ....................+...... 
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-  191 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV-DIEAARKEEERIMLRDARQWLNSGHIN-  191 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred             ccccccchhhcccccCcccccccccCccccccccccccchhcccccccccc-ccccccccccccccccchhhhcccccc-
Confidence            666666666666666666666666666666666544333332222211100 000000000001111222223333333 


Q ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCC
Q 046373          239 YELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNV  318 (364)
Q Consensus       239 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~  318 (364)
                      ....+..|.||||.|+..|+.++++.|++.   ++++|.++..|.||||+|++.|+  ..++.+|+++|++++.+|..|+
T Consensus       192 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~---g~din~~~~~g~TpL~~A~~~g~--~~iv~lLl~~Gadv~~~d~~G~  266 (291)
T d1s70b_         192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RYDVNIKDYDGWTPLHAAAHWGK--EEACRILVENLCDMEAVNKVGQ  266 (291)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHTTC--HHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cccccCCCCChhhHHHHcCChhhhcccccc---eecccccccCCCCHHHHHHHcCC--HHHHHHHHHCCCCCCCcCCCCC
Confidence            345677889999999999999999999987   88899999999999999999999  5566777789999999999999


Q ss_pred             chhHHhhh
Q 046373          319 SVTDVLIY  326 (364)
Q Consensus       319 t~l~~a~~  326 (364)
                      ||||+|.+
T Consensus       267 TaL~~A~e  274 (291)
T d1s70b_         267 TAFDVADE  274 (291)
T ss_dssp             CTTTSCCS
T ss_pred             CHHHHHHH
Confidence            99999964

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.6e-34  Score=245.93  Aligned_cols=236  Identities=20%  Similarity=0.232  Sum_probs=194.2

Q ss_pred             ccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCC
Q 046373           38 QTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEK  117 (364)
Q Consensus        38 ~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g  117 (364)
                      .++.|+|+.|  +..|+.+++++|++.    |++++..|.+|.||||+|+..|+.++|++|++++.+     ....+..+
T Consensus        38 ~~~~t~l~~A--~~~G~~~~v~~Ll~~----Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-----~~~~~~~~  106 (291)
T d1s70b_          38 FDDGAVFLAA--CSSGDTEEVLRLLER----GADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-----INQPDNEG  106 (291)
T ss_dssp             ECHHHHHHHH--HHHTCHHHHHHHHHH----CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTS
T ss_pred             CCCchHHHHH--HHcCCHHHHHHHHHC----CCCCCccCCCCCcHHHHHHhcCCceeeeeecccccc-----cccccccc
Confidence            4566999999  999999999999997    889999999999999999999999999999999865     56778889


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCChHHHHHHhhh
Q 046373          118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENC-TSVSHEGPNGKTALHAAAMHFY  196 (364)
Q Consensus       118 ~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~~  196 (364)
                      .+||+.++..++.++++.|++++.... ..+..+.+|+++|+..+..+.++.++... .++......+..+........+
T Consensus       107 ~~~L~~a~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (291)
T d1s70b_         107 WIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWL  185 (291)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhhcccccCcccc-cccccCccccccccccccchhccccccccccccccccccccccccccchhhh
Confidence            999999999999999999999998754 67788999999999999999999888643 3321111111111111111111


Q ss_pred             hhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccc
Q 046373          197 FENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIY  276 (364)
Q Consensus       197 ~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~  276 (364)
                      ...  ..........+.||||.|+..|+.+++++|+++|++ ++..+..|+||||+|+..|+.+++++|+++   |++++
T Consensus       186 ~~~--~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl~~---Gadv~  259 (291)
T d1s70b_         186 NSG--HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVEN---LCDME  259 (291)
T ss_dssp             HHT--CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTT
T ss_pred             ccc--ccccccccCCCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHHHC---CCCCC
Confidence            111  111223345789999999999999999999999998 588999999999999999999999999998   99999


Q ss_pred             cCCCCCCcHHHHHHh
Q 046373          277 EGDNNGNTPLHVLAA  291 (364)
Q Consensus       277 ~~d~~g~t~L~~A~~  291 (364)
                      .+|..|.||||+|++
T Consensus       260 ~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         260 AVNKVGQTAFDVADE  274 (291)
T ss_dssp             CCCTTSCCTTTSCCS
T ss_pred             CcCCCCCCHHHHHHH
Confidence            999999999999975

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=5.5e-33  Score=235.84  Aligned_cols=252  Identities=19%  Similarity=0.166  Sum_probs=187.3

Q ss_pred             CchHHHHHHHHHhcCCChHHHHHHHhcCCccccccC-CCCCcHHHHHHHcCCHHHHHHHHHHhhHH---HhHhhhcCCCC
Q 046373           41 NTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVN-AKGDTPLHLAAKFGHSNIVSFLIERAKLA---AWQMMRMTNNE  116 (364)
Q Consensus        41 ~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~~~~~  116 (364)
                      .||||+++ ...|+.++++.|.+.    +  ++..+ ..|+||||+|+..|+.++|++|+.+....   .+.+++.+|..
T Consensus         1 ~~p~~~~~-~~~~~~~~~~~l~~~----~--~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~   73 (277)
T d2fo1e1           1 ESPIKLHT-EAAGSYAITEPITRE----S--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD   73 (277)
T ss_dssp             CCCCHHHH-HHHSSSCCCSCCSTT----T--TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTT
T ss_pred             CChHHHHH-HhCCCHHHHHHHHhc----C--CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCC
Confidence            48999883 334555666555442    2  33444 46999999999999999999988765421   11247888999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcC---CCCCCCCCCCCChHHHHHH
Q 046373          117 KNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENC---TSVSHEGPNGKTALHAAAM  193 (364)
Q Consensus       117 g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~~~~l~~a~~  193 (364)
                      |.||||+|+..|+.+++++|+++|++++ ..+..|.||+++|+..++.++++++...+   ..++..+..+.++.+.+..
T Consensus        74 G~TpLh~A~~~g~~~iv~~Ll~~Gad~n-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (277)
T d2fo1e1          74 ENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH  152 (277)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred             CCeeeccccccccccccccccccccccc-cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHh
Confidence            9999999999999999999999999865 67888999999999999999999887654   3444555555555554433


Q ss_pred             hhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCc-------ccccccCCCCcHHHHHHHcCCHHHHHHHH
Q 046373          194 HFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPK-------CYELVDHRGWNFLHYAMVSFKLHELKILL  266 (364)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~-------~~~~~d~~g~t~l~~a~~~~~~~~~~~ll  266 (364)
                      ..                ...         ....+..+..+...       .....+..|.||||+++..++.+.++.++
T Consensus       153 ~~----------------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l  207 (277)
T d2fo1e1         153 NE----------------GRD---------QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV  207 (277)
T ss_dssp             SC----------------STT---------HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH
T ss_pred             cc----------------ccc---------ccccccccccccccccccccccccccccCCCCcccccccccccccccccc
Confidence            20                011         11222223322211       12345678999999999999999998766


Q ss_pred             hCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhhhccc
Q 046373          267 KNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLIYGSR  329 (364)
Q Consensus       267 ~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~~~~~  329 (364)
                      ..  .+.+++.+|..|.||||+|++.|+  ...+.+|+++|++++.+|.+|+||||+|+..+.
T Consensus       208 ~~--~~~~~~~~d~~g~tpL~~A~~~g~--~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         208 GE--KGSNKDKQDEDGKTPIMLAAQEGR--IEVVMYLIQQGASVEAVDATDHTARQLAQANNH  266 (277)
T ss_dssp             HH--SCCCTTCCCTTCCCHHHHHHHHTC--HHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             cc--ccccccccCCCCCCHHHHHHHcCC--HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCC
Confidence            43  277889999999999999999999  566777889999999999999999999976664

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.4e-31  Score=228.08  Aligned_cols=256  Identities=18%  Similarity=0.133  Sum_probs=213.0

Q ss_pred             cCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccC-CCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCC
Q 046373           39 TKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVN-AKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEK  117 (364)
Q Consensus        39 ~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g  117 (364)
                      ++.|+||.|  ++.|+.+++++|++.    |.+++..+ ..|+||||+|+..|+.+++++|++.+..     ....+..+
T Consensus         4 ~~~~~L~~A--i~~~~~e~vk~Ll~~----G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~-----~~~~~~~~   72 (285)
T d1wdya_           4 EDNHLLIKA--VQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-----PVLRKKNG   72 (285)
T ss_dssp             HHHHHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTC
T ss_pred             CCcHHHHHH--HHcCCHHHHHHHHHC----CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccc-----cccccccc
Confidence            568999999  999999999999986    77787655 4699999999999999999999999865     56677889


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhh
Q 046373          118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYF  197 (364)
Q Consensus       118 ~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~  197 (364)
                      .+|.++++..+..+...+.++...+.. ..+..+.++++.|+..++...+..++....+++........           
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  140 (285)
T d1wdya_          73 ATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED-----------  140 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHH-----------
T ss_pred             chhhHHHhhcCCccccchhhhhccccc-ccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhh-----------
Confidence            999999999999999999999877644 56778999999999999999999999988777654433211           


Q ss_pred             hcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcC----CHHHHHHHHhCccccc
Q 046373          198 ENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSF----KLHELKILLKNPLARS  273 (364)
Q Consensus       198 ~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~----~~~~~~~ll~~~~~~~  273 (364)
                             .......|.||||.|+..|+.+++++|+++....++..+..|.++++.+...+    ..+++++|+++   ++
T Consensus       141 -------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~---ga  210 (285)
T d1wdya_         141 -------QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH---GA  210 (285)
T ss_dssp             -------HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT---TC
T ss_pred             -------hhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHC---CC
Confidence                   11233478999999999999999999997644336888999998888776543    35688899988   89


Q ss_pred             ccccCCCCCCcHHHHHHhcCCcceeehhhhcc-cCCcccccccCCCchhHHhhhccc
Q 046373          274 LIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYD-AGGNYGAVNKQNVSVTDVLIYGSR  329 (364)
Q Consensus       274 ~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~-~~~~~~~~n~~g~t~l~~a~~~~~  329 (364)
                      +++.+|..|.||||+|++.++  ...+.++++ .|++++.+|.+|.||||+|+..+.
T Consensus       211 ~~n~~~~~g~t~L~~a~~~~~--~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~  265 (285)
T d1wdya_         211 DVNVRGERGKTPLILAVEKKH--LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL  265 (285)
T ss_dssp             CSSCCCTTSCCHHHHHHHTTC--HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCccCCCCCCccchhhhcCc--HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence            999999999999999999999  455555554 599999999999999999976543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-32  Score=222.62  Aligned_cols=198  Identities=22%  Similarity=0.170  Sum_probs=164.6

Q ss_pred             cCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCC
Q 046373           39 TKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKN  118 (364)
Q Consensus        39 ~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~  118 (364)
                      +|.||||+|  +..|+.+++..+++.+...+.+++..|.+|+||||+|+..|+.+++++|++.|++     ++..+..|.
T Consensus         1 dG~t~Lh~A--~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d-----~~~~d~~g~   73 (221)
T d1iknd_           1 DGDSFLHLA--IIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-----PELRDFRGN   73 (221)
T ss_dssp             CCCCTTHHH--HHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-----SCCCCTTCC
T ss_pred             CCChHHHHH--HHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccc-----ccccccccc
Confidence            589999999  9999988877777666666888999999999999999999999999999999876     678889999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCC-----CCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHH
Q 046373          119 TALHEAVCHGNVQVVKILTKQDPDYP-----YSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAM  193 (364)
Q Consensus       119 t~l~~a~~~~~~e~v~~Ll~~~~~~~-----~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~  193 (364)
                      |||++++..++.++++.|++.+....     ......|.||++.|+..++.+++++|+..|+.++..+            
T Consensus        74 t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~------------  141 (221)
T d1iknd_          74 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE------------  141 (221)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC------------
T ss_pred             cccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccccc------------
Confidence            99999999999999999998765432     2233457899999999999999999999987765332            


Q ss_pred             hhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCccc
Q 046373          194 HFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLA  271 (364)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~  271 (364)
                                     ...|.||||.|++.|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++....
T Consensus       142 ---------------~~~G~T~L~~A~~~g~~~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         142 ---------------PCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             ---------------TTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             ---------------ccCCCCccccccccccHHHHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence                           22578899999999999999999999998 588899999999999999999999999887433

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-31  Score=218.75  Aligned_cols=220  Identities=21%  Similarity=0.154  Sum_probs=144.1

Q ss_pred             cCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCC
Q 046373           39 TKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKN  118 (364)
Q Consensus        39 ~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~  118 (364)
                      +|.||||+|  +..|+.+++++|++.+...+.+++..|.+|+||||+|+..|+.+++++|+++++.     .+.....+.
T Consensus         2 dG~TpLh~A--~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-----~~~~~~~~~   74 (228)
T d1k1aa_           2 DGDTPLHIA--VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-----PMALDRHGQ   74 (228)
T ss_dssp             TTCCHHHHH--HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSC
T ss_pred             CCccHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccc-----ccccccccc
Confidence            577777777  7777777777777666556666777777777777777777777777777776654     455566677


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhh
Q 046373          119 TALHEAVCHGNVQVVKILTKQDPD---YPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHF  195 (364)
Q Consensus       119 t~l~~a~~~~~~e~v~~Ll~~~~~---~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~  195 (364)
                      ++++.|...++.++++.+......   ..........++++.+...........|.....+...                
T Consensus        75 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~----------------  138 (228)
T d1k1aa_          75 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA----------------  138 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC----------------
T ss_pred             cccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccccccc----------------
Confidence            777777777777776666554322   1112333455667776666666666666665543221                


Q ss_pred             hhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCccccccc
Q 046373          196 YFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLI  275 (364)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i  275 (364)
                                 .....+.++|+.|+..+...+++.+++++.+ .+.+|..|.||||+|+..|+.+++++|+++   |+++
T Consensus       139 -----------~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---Gad~  203 (228)
T d1k1aa_         139 -----------VDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRS---GADS  203 (228)
T ss_dssp             -----------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCT
T ss_pred             -----------ccccchhhHHHHHHHhhhhhhhhhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHHHC---CCCC
Confidence                       1122456677777777777777777777666 355667777777777777777777777776   6677


Q ss_pred             ccCCCCCCcHHHHHHhcCCcc
Q 046373          276 YEGDNNGNTPLHVLAAIRPKE  296 (364)
Q Consensus       276 ~~~d~~g~t~L~~A~~~~~~~  296 (364)
                      +.+|..|.||||+|+++|+.+
T Consensus       204 n~~d~~G~TpL~~A~~~~~~d  224 (228)
T d1k1aa_         204 SLKNCHNDTPLMVARSRRVID  224 (228)
T ss_dssp             TCCCTTSCCTTTTCSSHHHHH
T ss_pred             CCCCCCCCCHHHHHHhCCCcc
Confidence            777777777777777666533

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.6e-32  Score=220.95  Aligned_cols=193  Identities=22%  Similarity=0.200  Sum_probs=160.8

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCch
Q 046373           78 KGDTPLHLAAKFGHSN----IVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKT  153 (364)
Q Consensus        78 ~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t  153 (364)
                      +|.||||+|+..|+.+    +++++...+..     ++.+|.+|.||||+|+..|+.+++++|++.|+++. ..+..|.|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~-----in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-~~d~~g~t   74 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-----LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNT   74 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCC-----CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC-----cccCCCCCCcccccccccccccccccccccccccc-cccccccc
Confidence            5899999999999965    45555566644     78899999999999999999999999999999966 77888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHh
Q 046373          154 SLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILF  233 (364)
Q Consensus       154 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~  233 (364)
                      ||++|+..++.++++.|++.+........                      .......+.||||.|+..++.+++++|+.
T Consensus        75 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~  132 (221)
T d1iknd_          75 PLHLACEQGCLASVGVLTQSCTTPHLHSI----------------------LKATNYNGHTCLHLASIHGYLGIVELLVS  132 (221)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCG----------------------GGCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccccccchhhhhccccccccc----------------------ccccccccchhhhHHhhcCChhheeeecc
Confidence            99999999999999999998865432211                      12223467899999999999999999999


Q ss_pred             cCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehh
Q 046373          234 LDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIK  301 (364)
Q Consensus       234 ~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~  301 (364)
                      .+.......+.+|+||||+|+..|+.+++++|+++   |++++.+|..|.||||+|+..++.++...+
T Consensus       133 ~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~---gad~~~~~~~G~tpl~~A~~~~~~~~~~~l  197 (221)
T d1iknd_         133 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC---GADVNRVTYQGYSPYQLTWGRPSTRIQQQL  197 (221)
T ss_dssp             HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT---TCCSCCCCTTCCCGGGGCTTSSCHHHHHHH
T ss_pred             cCcccccccccCCCCccccccccccHHHHHHHHhc---CCcccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            99885444567899999999999999999999998   999999999999999999999995544433

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-30  Score=210.73  Aligned_cols=221  Identities=22%  Similarity=0.209  Sum_probs=184.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHH
Q 046373           77 AKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLY  156 (364)
Q Consensus        77 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~  156 (364)
                      ++|+||||+||..|+.++++.|++.... ...+++..|..|.||||+|+..|+.+++++|++++++.+ .....+.++++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~-~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-~~~~~~~~~~~   78 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQ-GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAAH   78 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCccCCCCCccceehhccccccccccccccccccc-ccccccccccc
Confidence            3699999999999999999999874321 112377889999999999999999999999999998866 66677899999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCC
Q 046373          157 MAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDP  236 (364)
Q Consensus       157 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~  236 (364)
                      .|...++.++++.+...........                        ........++|+.+.........+.|.....
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~  134 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDL------------------------EARNYDGLTALHVAVNTECQETVQLLLERGA  134 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCT------------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             cccccccccchhhhhhccccccccc------------------------cccccccccccccccccccchhhhhhhcccc
Confidence            9999999999988877653322111                        1122356788899998899999999998887


Q ss_pred             cccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccC
Q 046373          237 KCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQ  316 (364)
Q Consensus       237 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~  316 (364)
                      +........+.++++.|+..+...+++.+++.   +..++.+|..|.||||+|+..|+  ...+.+|+++|++++.+|.+
T Consensus       135 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~---~~~~~~~d~~g~t~L~~A~~~g~--~~~v~~Ll~~Gad~n~~d~~  209 (228)
T d1k1aa_         135 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGL--LPLVRTLVRSGADSSLKNCH  209 (228)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTC--HHHHHHHHHTTCCTTCCCTT
T ss_pred             ccccccccchhhHHHHHHHhhhhhhhhhhhhh---ccccccccccCcchHHHHHHcCC--HHHHHHHHHCCCCCCCCCCC
Confidence            76566778899999999999999999999998   88899999999999999999999  55667788999999999999


Q ss_pred             CCchhHHhhhcc
Q 046373          317 NVSVTDVLIYGS  328 (364)
Q Consensus       317 g~t~l~~a~~~~  328 (364)
                      |+||||+|+..+
T Consensus       210 G~TpL~~A~~~~  221 (228)
T d1k1aa_         210 NDTPLMVARSRR  221 (228)
T ss_dssp             SCCTTTTCSSHH
T ss_pred             CCCHHHHHHhCC
Confidence            999999996543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.9e-29  Score=204.67  Aligned_cols=202  Identities=22%  Similarity=0.221  Sum_probs=125.3

Q ss_pred             CChHHHHHHHhcCCccccc-cCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHH
Q 046373           56 GSTKFIGEMLKKCPSLLLQ-VNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVK  134 (364)
Q Consensus        56 ~~~~~l~~~l~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~  134 (364)
                      |+|++|+++    |.+++. .|.+|.||||+||.+|+.+++++|++.++.     ++..+..+.++++.++..++.....
T Consensus         3 ~~v~~Ll~~----g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-----~n~~~~~~~~~~~~~~~~~~~~~~~   73 (209)
T d1ot8a_           3 QVISDLLAQ----GAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-----ANSQDNTGRTPLHAAVAADAMGVFQ   73 (209)
T ss_dssp             HHHHHHHHH----HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHC----CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc-----ccccccccccccccccccccccccc
Confidence            445555554    555554 356666666666666666666666666544     4555666666666666666665555


Q ss_pred             HHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCch
Q 046373          135 ILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMT  214 (364)
Q Consensus       135 ~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t  214 (364)
                      ................+.++.+.+.........+.|...+++++..+.                            .+.|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~----------------------------~~~t  125 (209)
T d1ot8a_          74 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN----------------------------SGKT  125 (209)
T ss_dssp             HHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCT----------------------------TSCB
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCC----------------------------CCCC
Confidence            555444443334444555666666666666666666666655543322                            4556


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhcCC
Q 046373          215 ALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAIRP  294 (364)
Q Consensus       215 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~~~  294 (364)
                      ||+.++..+..++++.+++.+.+ ++..|..|.||||+|+..|+.++++.|+++   |++++.+|..|+||||+|+++|+
T Consensus       126 ~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~---gad~n~~d~~g~Tpl~~A~~~~~  201 (209)
T d1ot8a_         126 ALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDN---FANREITDHMDRLPRDVASERLH  201 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchhhcccCcceeeeeecccccc-ccccccccccccchhccccHHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCC
Confidence            66666666777777777777666 456677777777777777777777777776   66777777777777777777777


Q ss_pred             ccee
Q 046373          295 KEFF  298 (364)
Q Consensus       295 ~~~~  298 (364)
                      .+++
T Consensus       202 ~~iv  205 (209)
T d1ot8a_         202 HDIV  205 (209)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=2.5e-28  Score=198.00  Aligned_cols=206  Identities=21%  Similarity=0.179  Sum_probs=179.9

Q ss_pred             hHHhhhccCChhHHHhh-hhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHH
Q 046373           19 AETFKRNTTSDEIESLL-TAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSF   97 (364)
Q Consensus        19 ~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   97 (364)
                      -|+|++|+++| .+.+. .|.+|.||||+|  ++.|+.+++++|++.    +..++..+..+.++++.++..++......
T Consensus         2 ~~~v~~Ll~~g-~din~~~d~~G~t~L~~A--~~~g~~e~v~~Ll~~----g~~~n~~~~~~~~~~~~~~~~~~~~~~~~   74 (209)
T d1ot8a_           2 AQVISDLLAQG-AELNATMDKTGETSLHLA--ARFARADAAKRLLDA----GADANSQDNTGRTPLHAAVAADAMGVFQI   74 (209)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHCCCHHHHH--HHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHCC-CCcCcCcCCCCCCHHHHH--HHcCCHHHHHHHHhh----ccccccccccccccccccccccccccccc
Confidence            48999999998 77764 578999999999  999999999999986    78889999999999999999999887766


Q ss_pred             HHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCC
Q 046373           98 LIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSV  177 (364)
Q Consensus        98 Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~  177 (364)
                      ........    .......+.++.+.+.........+.|...+.++. ..+..|.||+++++..+..++++.+++.+.++
T Consensus        75 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~  149 (209)
T d1ot8a_          75 LLRNRATN----LNARMHDGTTPLILAARLAIEGMVEDLITADADIN-AADNSGKTALHWAAAVNNTEAVNILLMHHANR  149 (209)
T ss_dssp             HHTCTTCC----TTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccccccc----cccccccccccccccccccchhhhhhhhhhccccc-ccCCCCCCcchhhcccCcceeeeeeccccccc
Confidence            66554321    34455678899999999999999999999998866 67788999999999999999999999999988


Q ss_pred             CCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcC
Q 046373          178 SHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSF  257 (364)
Q Consensus       178 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~  257 (364)
                      +..+.                            .|.||||.|+..|+.+++++|+++|++ ++..|..|+||||+|+..|
T Consensus       150 ~~~d~----------------------------~g~TpL~~A~~~g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~  200 (209)
T d1ot8a_         150 DAQDD----------------------------KDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERL  200 (209)
T ss_dssp             TCCCT----------------------------TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             ccccc----------------------------ccccccchhccccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcC
Confidence            76554                            577888899999999999999999999 5889999999999999999


Q ss_pred             CHHHHHHH
Q 046373          258 KLHELKIL  265 (364)
Q Consensus       258 ~~~~~~~l  265 (364)
                      +.+++++|
T Consensus       201 ~~~iv~lL  208 (209)
T d1ot8a_         201 HHDIVRLL  208 (209)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHhhc
Confidence            99999875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=3.6e-30  Score=224.54  Aligned_cols=139  Identities=17%  Similarity=0.144  Sum_probs=111.0

Q ss_pred             hhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcC
Q 046373           34 LLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMT  113 (364)
Q Consensus        34 ~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  113 (364)
                      ..++..|.||||+|  +++|+.++++++.. +...+++++..|.+|+||||+|+.+|+.++|++|++.|++..   ....
T Consensus        84 ~~~~~~~~t~L~~A--a~~g~~~~~~~~~~-L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~---~~~~  157 (346)
T d2ajaa1          84 HKKGIKSEVICFVA--AITGCSSALDTLCL-LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI---MAMI  157 (346)
T ss_dssp             HHHTCCHHHHHHHH--HHHCCHHHHHHHTT-C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH---HHHH
T ss_pred             HhccCCCCcHHHHH--HHhCCHHHHHHHHH-HHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc---cccc
Confidence            35666889999999  99999998887643 223478899999999999999999999999999999997632   1122


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC--CCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCC
Q 046373          114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPY--SENKYGKTSLYMAAEGRYSEMVIELLENCTSVS  178 (364)
Q Consensus       114 ~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~--~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~  178 (364)
                      +..|.||||+|+..|+.+++++|++.++....  ..+..+.||++.|+.+|+.+++++|++.|++++
T Consensus       158 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         158 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             ccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence            35689999999999999999999999875321  233456788889999999999999999887653

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.5e-27  Score=179.54  Aligned_cols=153  Identities=22%  Similarity=0.209  Sum_probs=116.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHh
Q 046373           81 TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE  160 (364)
Q Consensus        81 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  160 (364)
                      +|||+|+..|+.++|++|+++|++     ++..|..|.||||+|+ .|+.+++++|+++++++. ..+..+.++++.++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d-----~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~~~~~~~~l~~~~~   75 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN-----VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LKDRTGFAVIHDAAR   75 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC-----TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-----cCccCCcccccccccc-cccccccccccccccccc-cccccCccccccccc
Confidence            678888888888888888887765     6777788888888764 677888888888877755 566677888888888


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccc
Q 046373          161 GRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYE  240 (364)
Q Consensus       161 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~  240 (364)
                      .+...+++.|++.+.+++..+.                            .+.+|++.|+..++.+++++|+++++...+
T Consensus        76 ~~~~~~~~~l~~~~~~~~~~~~----------------------------~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~  127 (156)
T d1ihba_          76 AGFLDTLQTLLEFQADVNIEDN----------------------------EGNLPLHLAAKEGHLRVVEFLVKHTASNVG  127 (156)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHHHHHSCCCTT
T ss_pred             cccccccccccccccccccccc----------------------------cccccccccccccccccccccccccccccc
Confidence            8888888888887776654443                            456677777777888888888888775567


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          241 LVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       241 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                      .+|..|+||||+|+..++.+++++|+++
T Consensus       128 ~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_         128 HRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            7788888888888888888888888775

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6e-27  Score=180.67  Aligned_cols=154  Identities=21%  Similarity=0.168  Sum_probs=141.8

Q ss_pred             hhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHH
Q 046373            8 PNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAA   87 (364)
Q Consensus         8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~   87 (364)
                      ++||.||..|++++|++|+++| .+....+..|.||||+|  + .++.+++++|++.    +.+++..+..+.++++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g-~d~n~~d~~g~TpL~~A--~-~~~~ei~~~Ll~~----~a~~~~~~~~~~~~l~~~~   74 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVM--K-LGNPEIARRLLLR----GANPDLKDRTGFAVIHDAA   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSC-CCTTCCCTTSCCHHHHC--C-SSCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC-CCcCccCCccccccccc--c-ccccccccccccc----ccccccccccCcccccccc
Confidence            6899999999999999999998 77788888999999987  6 6888999999885    7888999999999999999


Q ss_pred             HcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHH
Q 046373           88 KFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMV  167 (364)
Q Consensus        88 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v  167 (364)
                      ..++.+.++.|++.+..     .+..+..|.+|+|+|+..++.+++++|+++++......+..|.||||+|+..++.+++
T Consensus        75 ~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv  149 (156)
T d1ihba_          75 RAGFLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV  149 (156)
T ss_dssp             HHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999998865     6788999999999999999999999999999865668889999999999999999999


Q ss_pred             HHHHHcC
Q 046373          168 IELLENC  174 (364)
Q Consensus       168 ~~Ll~~~  174 (364)
                      ++|+++|
T Consensus       150 ~~Ll~~G  156 (156)
T d1ihba_         150 SLMQANG  156 (156)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhcC
Confidence            9999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=1.8e-29  Score=220.18  Aligned_cols=241  Identities=13%  Similarity=0.031  Sum_probs=153.6

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHH---HHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC-
Q 046373           71 LLLQVNAKGDTPLHLAAKFGHSNIVSF---LIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYS-  146 (364)
Q Consensus        71 ~~~~~~~~g~t~L~~A~~~~~~~~v~~---Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~-  146 (364)
                      +++..+..|.|||++|+.+|+.+++++   |++.++.     ++..+..|.||||+|+..|+.++|++|+++|++++.. 
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-----in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~  156 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-----VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM  156 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-----CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-----ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc
Confidence            345677889999999999999887766   6788865     7888999999999999999999999999999986532 


Q ss_pred             CCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHH
Q 046373          147 ENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHAR  226 (364)
Q Consensus       147 ~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~  226 (364)
                      .+..|.||||+|+..|+.++|++|++.|++...                        .. .....+.||++.|+.+|+.+
T Consensus       157 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~------------------------~~-~~~~~~~t~l~~A~~~g~~~  211 (346)
T d2ajaa1         157 IQAENYHAFRLAAENGHLHVLNRLCELAPTEAT------------------------AM-IQAENYYAFRWAAVGRGHHN  211 (346)
T ss_dssp             HSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHH------------------------HH-HHHHHHHHHHHHHSTTCCHH
T ss_pred             cccCCCChhHHHHHHhhHHHHHHHHHcCCcccc------------------------cc-cccCCCcchhhHHhhcCHHH
Confidence            234689999999999999999999999865320                        01 11124567888888999999


Q ss_pred             HHHHHHhcCCcccccccC-------CCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCC-------CCCcHHHHHHhc
Q 046373          227 TVETILFLDPKCYELVDH-------RGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDN-------NGNTPLHVLAAI  292 (364)
Q Consensus       227 ~~~~Ll~~~~~~~~~~d~-------~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~-------~g~t~L~~A~~~  292 (364)
                      ++++|+++|++. +..+.       .+.++++.+...+..+....+.... .....+..+.       .+.++++.|+..
T Consensus       212 iv~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  289 (346)
T d2ajaa1         212 VINFLLDCPVML-AYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN-PDGVFDLVTKSECLQGFYMLRNLIRRNDE  289 (346)
T ss_dssp             HHHHHTTSHHHH-HHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTS-SSSCCCCSSHHHHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHhCCCCc-chHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhc-ccccHhHHhcccccccchhhhHHHHHhcC
Confidence            999999887653 22211       1223444443333332222222110 0111111111       124567777777


Q ss_pred             CCcceeehhhhcccCCc-----ccccccCCCchhHHhhhcccceeeccccchHHhhhc
Q 046373          293 RPKEFFKIKVRYDAGGN-----YGAVNKQNVSVTDVLIYGSRELTLSNVNFQEEVRNL  345 (364)
Q Consensus       293 ~~~~~~~~~ll~~~~~~-----~~~~n~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~  345 (364)
                      +.  ...+.+|++.+..     .+..+.+|+||||+|+..+..-.++.....++|..+
T Consensus       290 ~~--ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p~v~~~  345 (346)
T d2ajaa1         290 VL--LDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLAL  345 (346)
T ss_dssp             GG--HHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHHHHHS
T ss_pred             Ch--HHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCCCcccC
Confidence            76  4444444444432     233445677777777666665555555555555543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.3e-27  Score=180.08  Aligned_cols=152  Identities=20%  Similarity=0.223  Sum_probs=135.3

Q ss_pred             hhHHHHHhcCChHHhhhccCChhHHHhhhhccCCchHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHH
Q 046373            8 PNFFNAAAAGDAETFKRNTTSDEIESLLTAQTKNTILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAA   87 (364)
Q Consensus         8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~   87 (364)
                      +.|+.||..|++++|++|++.++.+....+..|.||||+|  +. ++.+++++|++.    +.+++..+..|.+|++.++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A--~~-~~~~~v~~Ll~~----~~~~~~~~~~~~~~l~~~~   76 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM--MF-GSTAIALELLKQ----GASPNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHS--CT-TCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccc--cc-cccccccccccc----ccccccccccccccccccc
Confidence            5799999999999999999886577778888999999998  75 677888888875    6778888999999999999


Q ss_pred             HcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHH
Q 046373           88 KFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMV  167 (364)
Q Consensus        88 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v  167 (364)
                      ..++.++++++++.+.+     ++..+..|.||||+|+..|+.+++++|+ .+++++ ..|..|.||||+|+..|+.+++
T Consensus        77 ~~~~~~~~~~~l~~~~~-----~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~-~~d~~G~TpL~~A~~~g~~~iv  149 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHGAD-----VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH-RRDARGLTPLELALQRGAQDLV  149 (156)
T ss_dssp             HTTCHHHHHHHHHTTCC-----SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT-CCCTTSCCHHHHHHHSCCHHHH
T ss_pred             ccccccccccccccccc-----cccccCCCCeeecccccccccccccccc-cccccc-ccCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999865     6788899999999999999999999887 577755 7788999999999999999999


Q ss_pred             HHHHHc
Q 046373          168 IELLEN  173 (364)
Q Consensus       168 ~~Ll~~  173 (364)
                      ++|+++
T Consensus       150 ~~Ll~h  155 (156)
T d1bd8a_         150 DILQGH  155 (156)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            999975

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.7e-25  Score=171.14  Aligned_cols=152  Identities=22%  Similarity=0.215  Sum_probs=98.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHh
Q 046373           81 TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE  160 (364)
Q Consensus        81 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  160 (364)
                      +.|+.|+..|+.++|+.|++.+..    +++..|..|.||||+|+ .++.+++++|++++.+++ ..+..|.+|+++++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~----~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~-~~~~~~~~~l~~~~~   77 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELV----HPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN-VQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCC----CTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCC----CCCccCCCCCccccccc-cccccccccccccccccc-ccccccccccccccc
Confidence            346777777777777777765321    25666667777777665 366677777777666654 445556777777777


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccc
Q 046373          161 GRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYE  240 (364)
Q Consensus       161 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~  240 (364)
                      .++.++++++++.|++++.++.                            .+.||||+|+..|+.+++++|+ .+++ ++
T Consensus        78 ~~~~~~~~~~l~~~~~~n~~~~----------------------------~~~t~L~~A~~~~~~~i~~~L~-~~~~-~~  127 (156)
T d1bd8a_          78 TGFLDTLKVLVEHGADVNVPDG----------------------------TGALPIHLAVQEGHTAVVSFLA-AESD-LH  127 (156)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCT----------------------------TSCCHHHHHHHHTCHHHHHHHH-TTSC-TT
T ss_pred             cccccccccccccccccccccC----------------------------CCCeeecccccccccccccccc-cccc-cc
Confidence            7777777777777666654333                            4566667777777777776665 3454 45


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          241 LVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       241 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                      .+|..|+||||+|+..|+.+++++|+++
T Consensus       128 ~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         128 RRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            6667777777777777777777776654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=4.4e-25  Score=169.45  Aligned_cols=148  Identities=22%  Similarity=0.218  Sum_probs=83.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHh
Q 046373           81 TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE  160 (364)
Q Consensus        81 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  160 (364)
                      |||+.|+..|+.++|++|+++|++     ++ .+..|.||||+|+..++.++++.++....... ..+..+.++++.++.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~-----~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   76 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAP-----FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCC-----CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCC-----cc-cccCCCcccccccccccccccccccccccccc-ccccccccccccccc
Confidence            566666666666666666666543     22 35556666666666666666666555544433 333445556666666


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccc
Q 046373          161 GRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYE  240 (364)
Q Consensus       161 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~  240 (364)
                      ..+.++++++...+++.+.++.                            .|.||||+|+..|+.+++++|+++|++ ++
T Consensus        77 ~~~~~~~~~l~~~~~~~~~~~~----------------------------~g~T~L~~A~~~g~~~iv~~ll~~gad-~~  127 (153)
T d1awcb_          77 EGHANIVEVLLKHGADVNAKDM----------------------------LKMTALHWATEHNHQEVVELLIKYGAD-VH  127 (153)
T ss_dssp             HTCHHHHHHHHTTTCCTTCCCT----------------------------TSCCHHHHHHHTTCHHHHHHHHHTTCC-TT
T ss_pred             cccceeeecccccCCccccccc----------------------------cCchHHHhhhhcchhheeeeccccccC-Cc
Confidence            6666666666665555443332                            344555555555566666666666555 34


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHH
Q 046373          241 LVDHRGWNFLHYAMVSFKLHELKI  264 (364)
Q Consensus       241 ~~d~~g~t~l~~a~~~~~~~~~~~  264 (364)
                      .+|..|.||||+|+..|+.+++++
T Consensus       128 ~~d~~g~Tpl~~A~~~g~~eiv~l  151 (153)
T d1awcb_         128 TQSKFCKTAFDISIDNGNEDLAEI  151 (153)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHh
Confidence            556666666666666666655554

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5.8e-25  Score=168.77  Aligned_cols=148  Identities=22%  Similarity=0.216  Sum_probs=130.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhh
Q 046373          118 NTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYF  197 (364)
Q Consensus       118 ~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~  197 (364)
                      .|||+.|++.|+.+++++|+++|++..  .+..|.||||+|+..++.++++.++..........                
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~----------------   64 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART----------------   64 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC----------------
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccccccc----------------
Confidence            389999999999999999999999764  68889999999999999999999998775543222                


Q ss_pred             hcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCccccccccc
Q 046373          198 ENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYE  277 (364)
Q Consensus       198 ~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~  277 (364)
                                  ..+.++++.++...+.+.+++++.++.+ .+.+|..|+||||+|+..|+.+++++|++.   |++++.
T Consensus        65 ------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~---gad~~~  128 (153)
T d1awcb_          65 ------------KVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKY---GADVHT  128 (153)
T ss_dssp             ------------TTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTC
T ss_pred             ------------cccccccccccccccceeeecccccCCc-cccccccCchHHHhhhhcchhheeeecccc---ccCCcc
Confidence                        2566788889999999999999999998 477899999999999999999999999998   999999


Q ss_pred             CCCCCCcHHHHHHhcCCcceee
Q 046373          278 GDNNGNTPLHVLAAIRPKEFFK  299 (364)
Q Consensus       278 ~d~~g~t~L~~A~~~~~~~~~~  299 (364)
                      +|..|.||||+|+..|+.++..
T Consensus       129 ~d~~g~Tpl~~A~~~g~~eiv~  150 (153)
T d1awcb_         129 QSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999966543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.5e-25  Score=191.72  Aligned_cols=190  Identities=18%  Similarity=0.093  Sum_probs=117.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCC-------HHHHHHHHHcCCCCCCCCCCCCC
Q 046373          114 NNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRY-------SEMVIELLENCTSVSHEGPNGKT  186 (364)
Q Consensus       114 ~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~-------~~~v~~Ll~~~~~~~~~~~~~~~  186 (364)
                      |..|.||||+|+..|+.+++++|+++|+++. ..|..|.||||.|+..++       .++++++..   .+..++..|+|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~~g~t  179 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILEDSMNRT  179 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEECTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-cCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcccccCC
Confidence            7778888888888888888888888888766 667778888888887654       133444332   34555666777


Q ss_pred             hHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHH
Q 046373          187 ALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILL  266 (364)
Q Consensus       187 ~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll  266 (364)
                      |||+++......                ....+++.....++.++.+.+..+.......+.++++.+........+..+.
T Consensus       180 ~lh~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (301)
T d1sw6a_         180 ILHHIIITSGMT----------------GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD  243 (301)
T ss_dssp             HHHHHHHHHTST----------------TCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS
T ss_pred             HHHHHHHHhCcc----------------ccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHh
Confidence            777766431111                1111122112235566777666655555666677777666655544333221


Q ss_pred             hCcccccccccCCCCCCcHHHHHHhcCCcceeehhhhcccCCcccccccCCCchhHHhh
Q 046373          267 KNPLARSLIYEGDNNGNTPLHVLAAIRPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLI  325 (364)
Q Consensus       267 ~~~~~~~~i~~~d~~g~t~L~~A~~~~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~  325 (364)
                      ........+|.+|..|+||||+|++.|+  ..++.+|++.|++++++|..|+||||||+
T Consensus       244 ~~~~~~~~in~~D~~G~TpLh~A~~~g~--~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         244 LKWIIANMLNAQDSNGDTCLNIAARLGN--ISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHTTTCCCTTSCCHHHHHHHHCC--HHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             hHHHHhcCccCCCCCCCCHHHHHHHcCC--HHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            1101133488999999999999999999  77778888999999999999999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=3.5e-24  Score=156.15  Aligned_cols=107  Identities=18%  Similarity=0.114  Sum_probs=101.1

Q ss_pred             chHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCCcHHHHHHhc
Q 046373          213 MTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGNTPLHVLAAI  292 (364)
Q Consensus       213 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~t~L~~A~~~  292 (364)
                      .|||++|++.|+.+++++|+++|++ ++.++..|+||||+|+..++.++++++++.   +++++.+|..|+||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~---g~din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHS---SCTTTCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccc---cceeeecccccccchhhhhhc
Confidence            4799999999999999999999998 588999999999999999999999999998   899999999999999999999


Q ss_pred             CCcceeehhhhcccCCcccccccCCCchhHHhh
Q 046373          293 RPKEFFKIKVRYDAGGNYGAVNKQNVSVTDVLI  325 (364)
Q Consensus       293 ~~~~~~~~~ll~~~~~~~~~~n~~g~t~l~~a~  325 (364)
                      |+  ...+.+|+++|++++.+|..|+||+|+|.
T Consensus        79 ~~--~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          79 GH--VSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TC--CHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             Cc--hhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            99  66778888999999999999999999984

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-23  Score=155.22  Aligned_cols=121  Identities=15%  Similarity=0.122  Sum_probs=93.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHH
Q 046373           79 GDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMA  158 (364)
Q Consensus        79 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A  158 (364)
                      +.++||+|+..|+.++|++|+++|++     ++..+..|.||+|.|+ .|+.+++++|+++|++++......+.||||+|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad-----~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A   76 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN-----PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   76 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC-----TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc-----cccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            45788888888888888888888865     6777888888888664 68888888888888887643333345688888


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHh
Q 046373          159 AEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILF  233 (364)
Q Consensus       159 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~  233 (364)
                      +..|+.+++++|++.|++++.++.                            .|.||||+|+..|+.+++++|+.
T Consensus        77 ~~~g~~~~v~~Ll~~ga~~~~~d~----------------------------~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          77 AREGFLDTLVVLHRAGARLDVRDA----------------------------WGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHTCHHHHHHHHHHTCCSSCCCT----------------------------TCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccC----------------------------CCCCHHHHHHHcCCHHHHHHHHh
Confidence            888888888888888888776655                            46667777777788888888764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-23  Score=154.16  Aligned_cols=121  Identities=17%  Similarity=0.152  Sum_probs=95.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhh
Q 046373          117 KNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAEGRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFY  196 (364)
Q Consensus       117 g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~  196 (364)
                      +.++||+|+..|+.+++++|+++|++++ ..+..|.||+|+|+ .|+.+++++|+++|++++..+..             
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n-~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~-------------   67 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA-------------   67 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTT-------------
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccc-cccccccccccccc-ccccccccccccccccccccccc-------------
Confidence            4578888888888888888888888765 66777888888664 67888888888888887655432             


Q ss_pred             hhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHh
Q 046373          197 FENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLK  267 (364)
Q Consensus       197 ~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~  267 (364)
                                    .+.+|||.|++.|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+.
T Consensus        68 --------------~~~~~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          68 --------------TLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             --------------TCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             --------------ccccccccccccccccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                          234678888888888888888888877 57788888888888888888888888775

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.5e-24  Score=184.00  Aligned_cols=180  Identities=17%  Similarity=0.114  Sum_probs=121.7

Q ss_pred             Ccccccc-CCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCC-------HHHHHHHHhcC
Q 046373           69 PSLLLQV-NAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGN-------VQVVKILTKQD  140 (364)
Q Consensus        69 ~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~-------~e~v~~Ll~~~  140 (364)
                      +.+++.. |..|+||||+||..|+.++|++|+++|++     ++.+|..|.||||.|+..++       .++++++... 
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad-----~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~-  169 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-----RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC-  169 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG-
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh-
Confidence            3455544 88999999999999999999999999976     78899999999999998764       3555655543 


Q ss_pred             CCCCCCCCcCCchHHHHHHhcCC----HHHH--------HHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhc
Q 046373          141 PDYPYSENKYGKTSLYMAAEGRY----SEMV--------IELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIAD  208 (364)
Q Consensus       141 ~~~~~~~~~~~~t~l~~A~~~~~----~~~v--------~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~  208 (364)
                         ....|..|.||||+++..+.    ...+        .++.+.+......                           .
T Consensus       170 ---~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------------------~  219 (301)
T d1sw6a_         170 ---LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS---------------------------G  219 (301)
T ss_dssp             ---GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEE---------------------------C
T ss_pred             ---hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhc---------------------------c
Confidence               23567789999998886443    3333        3333333221110                           1


Q ss_pred             cCCCchHHHHHHhcCCHHH-----HHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhCcccccccccCCCCCC
Q 046373          209 KDRKMTALHLAAGQGHART-----VETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKNPLARSLIYEGDNNGN  283 (364)
Q Consensus       209 ~~~~~t~L~~a~~~~~~~~-----~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~i~~~d~~g~  283 (364)
                      .....++++.+........     +..++...   ++.+|..|+||||+|+..|+.+++++|++.   |++++.+|..|.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~---GAd~~~~n~~G~  293 (301)
T d1sw6a_         220 TNEKESKPNDKNGERKDSILENLDLKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIANKSGL  293 (301)
T ss_dssp             ----------------CHHHHHCSHHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCCCTTSC
T ss_pred             cccccchhHHHHhcchHHHHHHHhhHHHHhcC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCC
Confidence            1122223332222222111     12222222   467899999999999999999999999998   999999999999


Q ss_pred             cHHHHHH
Q 046373          284 TPLHVLA  290 (364)
Q Consensus       284 t~L~~A~  290 (364)
                      |||++|+
T Consensus       294 Tpl~~A~  300 (301)
T d1sw6a_         294 RPVDFGA  300 (301)
T ss_dssp             CGGGGTC
T ss_pred             CHHHHcC
Confidence            9999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=5.9e-24  Score=154.90  Aligned_cols=106  Identities=25%  Similarity=0.251  Sum_probs=98.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHH
Q 046373           80 DTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAA  159 (364)
Q Consensus        80 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~  159 (364)
                      .|||++|+..|+.++|++|+++|++     ++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-----~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din-~~d~~g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-----VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-----CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT-CCSSSCSCHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-----cccccccccccccccccccccccccccccccceee-ecccccccchhhhh
Confidence            3799999999999999999999876     78889999999999999999999999999999976 67888999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCChHHHH
Q 046373          160 EGRYSEMVIELLENCTSVSHEGPNGKTALHAA  191 (364)
Q Consensus       160 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a  191 (364)
                      .+|+.+++++|+++|++++.++.+|.||||+|
T Consensus        77 ~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          77 YEGHVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             TTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hcCchhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            99999999999999999999999999999876

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8e-23  Score=151.54  Aligned_cols=121  Identities=24%  Similarity=0.145  Sum_probs=90.8

Q ss_pred             chHHHHHHHHHhcCCChHHHHHHHhcCCccccccCCCCCcHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHH
Q 046373           42 TILHINIISQKRKNGSTKFIGEMLKKCPSLLLQVNAKGDTPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTAL  121 (364)
Q Consensus        42 t~L~~A~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l  121 (364)
                      ++|+.|  +..|+.+++++|++.    +.+++..|.+|+||||+|+..|+.+++++|++.+++     ++..|.+|.|||
T Consensus         3 ~lL~~A--~~~G~~~~v~~Ll~~----g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-----~~~~d~~g~tpL   71 (130)
T d1ycsb1           3 ALLLDS--SLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-----VNAADSDGWTPL   71 (130)
T ss_dssp             HHHHHH--HHHTCHHHHHHHTST----TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-----TTCCCTTCCCHH
T ss_pred             HHHHHH--HHcCCHHHHHHHHHc----CCCccccccccccccccccccccccccccccccccc-----cccccccCcccc
Confidence            567777  778887777777764    667777788888888888888888888888887755     677778888888


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHH--HhcCCHHHHHHHHHc
Q 046373          122 HEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMA--AEGRYSEMVIELLEN  173 (364)
Q Consensus       122 ~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A--~~~~~~~~v~~Ll~~  173 (364)
                      |+|+.+|+.+++++|+++|++++......+.||+.++  +..|+.+++++|++.
T Consensus        72 h~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          72 HCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            8888888888888888888776644444567766554  456778888888764

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-22  Score=150.27  Aligned_cols=121  Identities=23%  Similarity=0.211  Sum_probs=105.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCchHHHHHHh
Q 046373           81 TPLHLAAKFGHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGKTSLYMAAE  160 (364)
Q Consensus        81 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~t~l~~A~~  160 (364)
                      ++|+.|+..|+.++|++|+++|++     ++.+|..|.||||+|+..|+.+++++|++.+++++ ..|..|+||||+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-----~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~-~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-----PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-----CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-----ccccccccccccccccccccccccccccccccccc-cccccCcccccccch
Confidence            689999999999999999999976     78899999999999999999999999999999876 788899999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCChHHHHHHhhhhhcchhhhhhhccCCCchHHH--HHHhcCCHHHHHHHHhc
Q 046373          161 GRYSEMVIELLENCTSVSHEGPNGKTALHAAAMHFYFENDQTAADIADKDRKMTALH--LAAGQGHARTVETILFL  234 (364)
Q Consensus       161 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~t~L~--~a~~~~~~~~~~~Ll~~  234 (364)
                      +|+.+++++|+++|++++..+..                           .+.|+++  .++..|+.+++++|+..
T Consensus        77 ~g~~~~v~~Ll~~ga~v~~~~~~---------------------------~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          77 CNNVQVCKFLVESGAAVFAMTYS---------------------------DMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCSS---------------------------SCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCcccccCC---------------------------CCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99999999999999998865532                           2344433  44567889999999864

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=2.5e-21  Score=147.12  Aligned_cols=93  Identities=24%  Similarity=0.297  Sum_probs=55.8

Q ss_pred             CCCCCcHHHHHHHc---CCHHHHHHHHHHhhHHHhHhhhcCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCcCCc
Q 046373           76 NAKGDTPLHLAAKF---GHSNIVSFLIERAKLAAWQMMRMTNNEKNTALHEAVCHGNVQVVKILTKQDPDYPYSENKYGK  152 (364)
Q Consensus        76 ~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~e~v~~Ll~~~~~~~~~~~~~~~  152 (364)
                      +..|+||||+|+..   ++.++|++|+++|++     ++.++..|.||||+|+..|+.+++++|+++|++++ ..|..|.
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-----in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~  115 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-----LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE-IANESGE  115 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-----hhhhhhhhccccccccccccccccccccccCcccc-ccCCCCC
Confidence            44556666666653   345566666666544     45556666666666666666666666666666544 4555666


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcC
Q 046373          153 TSLYMAAEGRYSEMVIELLENC  174 (364)
Q Consensus       153 t~l~~A~~~~~~~~v~~Ll~~~  174 (364)
                      ||||+|+..|+.+++++|++.+
T Consensus       116 tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1         116 TPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHhC
Confidence            6666666666666666666654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=4.9e-20  Score=139.85  Aligned_cols=119  Identities=19%  Similarity=0.140  Sum_probs=71.4

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCC-----CCcCCchHHHHHHhc---CCHHHHHHHHHcCCCCCCCCCCCCChHHHHH
Q 046373          121 LHEAVCHGNVQVVKILTKQDPDYPYS-----ENKYGKTSLYMAAEG---RYSEMVIELLENCTSVSHEGPNGKTALHAAA  192 (364)
Q Consensus       121 l~~a~~~~~~e~v~~Ll~~~~~~~~~-----~~~~~~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~a~  192 (364)
                      |..|++.++...+..++..|.++...     .+..|.||||+|+..   ++.+++++|+++|++++.++.          
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~----------   79 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG----------   79 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT----------
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhh----------
Confidence            34555666666666665555443321     234566666666653   456666666666666655443          


Q ss_pred             HhhhhhcchhhhhhhccCCCchHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 046373          193 MHFYFENDQTAADIADKDRKMTALHLAAGQGHARTVETILFLDPKCYELVDHRGWNFLHYAMVSFKLHELKILLKN  268 (364)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~  268 (364)
                                        .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++.
T Consensus        80 ------------------~g~TpLh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          80 ------------------KGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             ------------------TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------------------hhccccccccccccccccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence                              345555556666666666666666666 356666666666666666666666666664