Citrus Sinensis ID: 046386

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61

SSSSSKSTDTEPEKKRRPVNIYRTLIHLFFLMAGQSRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGVSQVQLNYLATASDLGKLFGWLSGLALMYFPLWVVLFMAAFMGFFGYGLQWLVISHVISLPYILVFFLCLLSGLSITWFNTVCFVLCIQNFPANRALALSLTVSFNGVSAAIYALAGNAINPSSHALYLLLNALIPLITSLAALIPILRQPSLDPLPPEGVKRDSFIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGGALFLLMFPLCIPGIVYARDWFKRTIHSSFRLDGSGFLLIDVDDLELHKELLMREAEASNNGKELDQPLLSTDDISMTYSLTRTKSFEKGGCCETIIGKDQLAMLGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQSLGESSRTTTLLTLYSSFSFFGRLLSAAPDYMRAKVYFARTGWLTIALLPTPVAFCLLATSGNAVALQAGTSLIGLSSGFIFAAAVSITSELFGPNSVGVNHNILITNIPIGSLVYGFLAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTFVLWGCVSVVGLAASVLLFLRTRHAYDCFERKRLSSTQLY

ccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccHHHHHccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

ccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHcccHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccHEEEEHHHHHccccHHHHHHHHHHHHcccccccccEEEEEHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHEHHHHHccccccHHHccccccccccccccccccccccccccHccccccccccccccHHccccHHHHHHHHHHHHcccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHEEEEEEEHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

ssssskstdtepekkrrpvnIYRTLIHLFFLMAGQSRKWMILVATIWIQAftgtnfdfsayssdlksVLGVSQVQLNYLATASDLGKLFGWLSGLALMYFPLWVVLFMAAFMGFFGYGLQWLVISHVISLPYILVFFLCLLSGLSITWFNTVCFVLCIQNFPANRALALSLTVSFNGVSAAIYALAGNAINPSSHALYLLLNALIPLITSLAALipilrqpsldplppegvkrdsFIFLILNIIAILTGVYLLLFGahssdltvsRLLFGGALFLLMFPLCIPGIVYARDWfkrtihssfrldgsgfllidvdDLELHKELLMREAEAsnngkeldqpllstddismtysltrtksfekggccetiIGKDQLAMLGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQSlgessrttTLLTLYSSFSFFGRLLSAAPDYMRAKVYFARTGWLTIALLPTPVAFCLLATSGNAVALQAGTSLIGLSSGFIFAAAVSITselfgpnsvgvnhnilitnipigslVYGFLAAIVYdsnvssgigignVVSDSVVCMGRHCYFLTFVLWGCVSVVGLAASVLLFLRTRHaydcferkrlsstqly

ssssskstdtepekkrrpvniyRTLIHLFFLMAGQSRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGVSQVQLNYLATASDLGKLFGWLSGLALMYFPLWVVLFMAAFMGFFGYGLQWLVISHVISLPYILVFFLCLLSGLSITWFNTVCFVLCIQNFPANRALALSLTVSFNGVSAAIYALAGNAINPSSHALYLLLNALIPLITSLAALIPILRQPSLDPLPPEGVKRDSFIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGGALFLLMFPLCIPGIVYARDWFKRTIHSsfrldgsgflLIDVDDLELHKELLMREAeasnngkeldqpllstddISMTYSLtrtksfekggcCETIIGKDQLAMLGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQSLGESSRTTTLLTLYSSFSFFGRLLSAAPDYMRAKVYFARTGWLTIALLPTPVAFCLLATSGNAVALQAGTSLIGLSSGFIFAAAVSITSELFGPNSVGVNHNILITNIPIGSLVYGFLAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTFVLWGCVSVVGLAASVLLFLRTrhaydcferkrlsstqly

sssssksTDTEPEKKRRPVNIYRTLIHLFFLMAGQSRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGVSQVQLNYLATASDLGKLFGWLSGLALMYFPLWVVLfmaafmgffgYGLQWLVISHVISLPYILVFFLCLLSGLSITWFNTVCFVLCIQNFPANRALALSLTVSFNGVSAAIYALAGNAINPSSHAlylllnaliplitslAALIPILRQPSLDPLPPEGVKRDSfiflilniiailTGVYLLLFGAHSSDLTVSRllfggalfllmfplCIPGIVYARDWFKRTIHSSFRLDGSGFLLIDVDDLELHKELLMREAEASNNGKELDQPLLSTDDISMTYSLTRTKSFEKGGCCETIIGKDQLAMLGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQslgessrtttlltlyssfsffGRLLSAAPDYMRAKVYFARTGWLTIALLPTPVAFCLLATSGNAVALQAGTSLIGLSSGFIFAAAVSITSELFGPNSVGVNHNILITNIPIGSLVYGFLAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTFVLWGCvsvvglaasvllflRTRHAYDCFERKRLSSTQLY

******************VNIYRTLIHLFFLMAGQSRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGVSQVQLNYLATASDLGKLFGWLSGLALMYFPLWVVLFMAAFMGFFGYGLQWLVISHVISLPYILVFFLCLLSGLSITWFNTVCFVLCIQNFPANRALALSLTVSFNGVSAAIYALAGNAINPSSHALYLLLNALIPLITSLAALIPILRQPSLDPLPPEGVKRDSFIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGGALFLLMFPLCIPGIVYARDWFKRTIHSSFRLDGSGFLLIDVDDLELHKELL**********************ISMTYSLTRTKSFEKGGCCETIIGKDQLAMLGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQSLGESSRTTTLLTLYSSFSFFGRLLSAAPDYMRAKVYFARTGWLTIALLPTPVAFCLLATSGNAVALQAGTSLIGLSSGFIFAAAVSITSELFGPNSVGVNHNILITNIPIGSLVYGFLAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTFVLWGCVSVVGLAASVLLFLRTRHAYDCFE**********

****************************FFLMAGQSRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGVSQVQLNYLATASDLGKLFGWLSGLALMYFPLWVVLFMAAFMGFFGYGLQWLVISHVISLPYILVFFLCLLSGLSITWFNTVCFVLCIQNFPANRALALSLTVSFNGVSAAIYALAGNAINPSSHALYLLLNALIPLITSLAALIPILRQPSLDPL****VKRDSFIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGGALFLLMFPLCIPGIVYARDWFKRTIH*******SGFLLIDVDDLEL*********************************************************LGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQSLGESSRTTTLLTLYSSFSFFGRLLSAAPDYMRAKVYFARTGWLTIALLPTPVAFCLLATSGNAVALQAGTSLIGLSSGFIFAAAVSITSELFGPNSVGVNHNILITNIPIGSLVYGFLAAIVYDSNVS*********SDSVVCMGRHCYFLTFVLWGCVSVVGLAASVLLFLRTRHAYDCFE**********

***************RRPVNIYRTLIHLFFLMAGQSRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGVSQVQLNYLATASDLGKLFGWLSGLALMYFPLWVVLFMAAFMGFFGYGLQWLVISHVISLPYILVFFLCLLSGLSITWFNTVCFVLCIQNFPANRALALSLTVSFNGVSAAIYALAGNAINPSSHALYLLLNALIPLITSLAALIPILRQPSLDPLPPEGVKRDSFIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGGALFLLMFPLCIPGIVYARDWFKRTIHSSFRLDGSGFLLIDVDDLELHKELLMREAEASNNGKELDQPLLSTDDISMTYSLTRTKSFEKGGCCETIIGKDQLAMLGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQSLGESSRTTTLLTLYSSFSFFGRLLSAAPDYMRAKVYFARTGWLTIALLPTPVAFCLLATSGNAVALQAGTSLIGLSSGFIFAAAVSITSELFGPNSVGVNHNILITNIPIGSLVYGFLAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTFVLWGCVSVVGLAASVLLFLRTRHAYDCFERK********

****************RPVNIYRTLIHLFFLMAGQSRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGVSQVQLNYLATASDLGKLFGWLSGLALMYFPLWVVLFMAAFMGFFGYGLQWLVISHVISLPYILVFFLCLLSGLSITWFNTVCFVLCIQNFPANRALALSLTVSFNGVSAAIYALAGNAINPSSHALYLLLNALIPLITSLAALIPILRQPS*********KRDSFIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGGALFLLMFPLCIPGIVYARDWFKR***************************************************SMTYSLTRTKSFEKGGCCETIIGKDQLAMLGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQSLGESSRTTTLLTLYSSFSFFGRLLSAAPDYMRAKVYFARTGWLTIALLPTPVAFCLLATSGNAVALQAGTSLIGLSSGFIFAAAVSITSELFGPNSVGVNHNILITNIPIGSLVYGFLAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTFVLWGCVSVVGLAASVLLFLRTRHAYDCFERKRLS*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		609	2.2.26 [Sep-21-2011]
Q6CGU8		486	Probable transporter MCH1	yes	no	0.284	0.355	0.318	3e-08

>sp\|Q6CGU8\|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1	Back alignment and function desciption

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 103/198 (52%), Gaps = 25/198 (12%)

Query: 391 WLYYIAY-FCGGAIGLVYSNNLGQIAQSL----GESSRTTTLLTLYSSFSFFGRLLSA-A 444
           WL+ + + F GG   + + NN+G I  ++     +S   +T ++L+++FS   RL+   +
Sbjct: 275 WLFLLCFVFIGGPFEM-FQNNMGAILDTVTVENADSPSFSTHVSLFATFSTVSRLVVGFS 333

Query: 445 PDYMRAKVYFARTGWLTIALLPTPVAFC--LLATSG------NAVALQAGTSLIGLSSGF 496
            + M + V  +R   L++  L   VA C  L+  SG      NA      T + G S G 
Sbjct: 334 SEAMESHV--SRPVLLSVIAL---VAACIHLMVPSGIFTVFDNAKYFSVVTIVNGFSYGS 388

Query: 497 IFAAAVSITSELFGPNSVGVNHNILITNIPIGSLVYGFLAAIVYDSNVSSGIGIGNVVSD 556
            F    +I ++++G  ++G      I  + +GSL YG L A VYD+  +S +G+G++   
Sbjct: 389 SFTLVPTIVTKVWGIANLGTIWGSFILALAVGSLGYGLLFAKVYDA--ASEVGVGSM--- 443

Query: 557 SVVCMGRHCYFLTFVLWG 574
           S VC G HCY LTFV+ G
Sbjct: 444 SQVCSGVHCYGLTFVITG 461

Probable transporter.
Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		609
224074599		562	predicted protein [Populus trichocarpa]	0.921	0.998	0.772	0.0
224139150		549	predicted protein [Populus trichocarpa]	0.899	0.998	0.772	0.0
225427667		570	PREDICTED: uncharacterized protein LOC10	0.934	0.998	0.751	0.0
297804206		572	hypothetical protein ARALYDRAFT_492916 [	0.932	0.993	0.737	0.0
42573579		570	major facilitator protein [Arabidopsis t	0.929	0.992	0.719	0.0
56236086		570	At5g45275 [Arabidopsis thaliana] gi\|5679	0.929	0.992	0.717	0.0
21536488		572	unknown [Arabidopsis thaliana]	0.931	0.991	0.741	0.0
297791223		570	hypothetical protein ARALYDRAFT_494458 [	0.929	0.992	0.726	0.0
18415316		572	major facilitator protein [Arabidopsis t	0.931	0.991	0.737	0.0
357484531		573	hypothetical protein MTR_5g026350 [Medic	0.929	0.987	0.708	0.0

>gi\|224074599\|ref\|XP_002304396.1\| predicted protein [Populus trichocarpa] gi\|222841828\|gb\|EEE79375.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/579 (77%), Positives = 506/579 (87%), Gaps = 18/579 (3%)

Query: 32  MAGQSRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGVSQVQLNYLATASDLGKLFGW 91
           MAG+SRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLG+SQVQLNYLA ASDLGK+FGW
Sbjct: 1   MAGESRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGISQVQLNYLAVASDLGKVFGW 60

Query: 92  LSGLALMYFPLWVVLFMAAFMGFFGYGLQWLVISHVISLPYILVFFLCLLSGLSITWFNT 151
            SGLALMYFPLWVVLFMAAFMGFF YGLQWLVI +VISLPYILVF LCLL+G SI WFNT
Sbjct: 61  SSGLALMYFPLWVVLFMAAFMGFFSYGLQWLVIRNVISLPYILVFLLCLLAGCSICWFNT 120

Query: 152 VCFVLCIQNFPANRALALSLTVSFNGVSAAIYALAGNAINPSSHALYLLLNALIPLITSL 211
           VCFVLCI+NF ANR LALSLT++FNGVSAA+Y LAGNAI  SS+A+YLLLNA IPLI+S+
Sbjct: 121 VCFVLCIKNFSANRPLALSLTIAFNGVSAALYTLAGNAIGSSSNAIYLLLNASIPLISSI 180

Query: 212 AALIPILRQPSLDPLPPEGVKRDSFIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGG 271
           AALIPILRQPSLDPLPP+GV+RDS IFLILN ++ILTG+YLLLFG++SSD T +RLLFGG
Sbjct: 181 AALIPILRQPSLDPLPPDGVRRDSIIFLILNFLSILTGIYLLLFGSNSSDETRARLLFGG 240

Query: 272 ALFLLMFPLCIPGIVYARDWFKRTIHSSFRLDGSGFLLIDVDDLELHKELLMREAEASNN 331
           A+FLL+FPLCIPGIVYAR+WF RTIHSSF L GSGF+L+DV+DLELHKELL REA    N
Sbjct: 241 AIFLLIFPLCIPGIVYAREWFHRTIHSSFSLHGSGFMLVDVEDLELHKELLTREASYHEN 300

Query: 332 GKELDQPLLSTDDISMTYSLTRTKS-FEKGGCCETIIGKDQLAMLGEEHSARLLVLRLDF 390
                            Y  TR KS  EK GCC+T++ KD+L MLGEEH A LLV RLDF
Sbjct: 301 --------------ETVYGNTRQKSGGEKDGCCDTMVKKDRLEMLGEEHPAWLLVRRLDF 346

Query: 391 WLYYIAYFCGGAIGLVYSNNLGQIAQSLGESSRTTTLLTLYSSFSFFGRLLSAAPDYMRA 450
           WLYYIAYFCGG IGLVYSNNLGQIA+S+G+SS TTTL+TLYSSFSFFGRLLSAAPDY+RA
Sbjct: 347 WLYYIAYFCGGTIGLVYSNNLGQIAESVGQSSNTTTLVTLYSSFSFFGRLLSAAPDYIRA 406

Query: 451 KVYFARTGWLTIALLPTPVAFCLLATSGNAVALQAGTSLIGLSSGFIFAAAVSITSELFG 510
           K+YFARTGWLTIAL+PTP+AF LLA SGN +AL  GT+L+GLSSGFIFAAAVSITSELFG
Sbjct: 407 KIYFARTGWLTIALVPTPIAFFLLAASGNGLALHIGTALVGLSSGFIFAAAVSITSELFG 466

Query: 511 PNSVGVNHNILITNIPIGSLVYGFLAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTF 570
           PNS+GVNHNILITNIP+GSLVYG LAA+VYDS+ SS +   N+++DS VCMGR CY+LTF
Sbjct: 467 PNSIGVNHNILITNIPLGSLVYGVLAAVVYDSHASSSL---NIITDSAVCMGRQCYYLTF 523

Query: 571 VLWGCVSVVGLAASVLLFLRTRHAYDCFERKRLSSTQLY 609
           + WGC+SV+GL +S+LLFLRTRHAYD FE KR+S++ LY
Sbjct: 524 LWWGCLSVLGLTSSLLLFLRTRHAYDQFEVKRISTSLLY 562

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224139150\|ref\|XP_002326780.1\| predicted protein [Populus trichocarpa] gi\|222834102\|gb\|EEE72579.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225427667\|ref\|XP_002274370.1\| PREDICTED: uncharacterized protein LOC100263024 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297804206\|ref\|XP_002869987.1\| hypothetical protein ARALYDRAFT_492916 [Arabidopsis lyrata subsp. lyrata] gi\|297315823\|gb\|EFH46246.1\| hypothetical protein ARALYDRAFT_492916 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|42573579\|ref\|NP_974886.1\| major facilitator protein [Arabidopsis thaliana] gi\|332007841\|gb\|AED95224.1\| major facilitator protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|56236086\|gb\|AAV84499.1\| At5g45275 [Arabidopsis thaliana] gi\|56790236\|gb\|AAW30035.1\| At5g45275 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|21536488\|gb\|AAM60820.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297791223\|ref\|XP_002863496.1\| hypothetical protein ARALYDRAFT_494458 [Arabidopsis lyrata subsp. lyrata] gi\|297309331\|gb\|EFH39755.1\| hypothetical protein ARALYDRAFT_494458 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|18415316\|ref\|NP_567588.1\| major facilitator protein [Arabidopsis thaliana] gi\|24030181\|gb\|AAN41272.1\| unknown protein [Arabidopsis thaliana] gi\|332658784\|gb\|AEE84184.1\| major facilitator protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357484531\|ref\|XP_003612553.1\| hypothetical protein MTR_5g026350 [Medicago truncatula] gi\|355513888\|gb\|AES95511.1\| hypothetical protein MTR_5g026350 [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		609
TAIR\|locus:2140386		572	AT4G19450 "AT4G19450" [Arabido	0.929	0.989	0.629	9.4e-185
TAIR\|locus:1006230550		570	AT5G45275 "AT5G45275" [Arabido	0.929	0.992	0.616	1.6e-182
TAIR\|locus:2206169		582	NFD4 "NUCLEAR FUSION DEFECTIVE	0.467	0.489	0.525	2.6e-143
TAIR\|locus:2084183		551	AT3G01630 [Arabidopsis thalian	0.379	0.419	0.569	5.9e-120
TAIR\|locus:2065730		500	AT2G30300 "AT2G30300" [Arabido	0.353	0.43	0.331	2.6e-53
TAIR\|locus:2059829		546	AT2G16660 [Arabidopsis thalian	0.249	0.278	0.393	1.7e-47
TAIR\|locus:2116855		567	AT4G34950 [Arabidopsis thalian	0.259	0.278	0.397	3.5e-46
TAIR\|locus:2198938		561	AT1G80530 "AT1G80530" [Arabido	0.251	0.272	0.350	1.5e-34
TAIR\|locus:2078643		584	AT3G01930 [Arabidopsis thalian	0.264	0.275	0.314	2.1e-30
TAIR\|locus:2159752		540	AT5G50520 [Arabidopsis thalian	0.256	0.288	0.316	1.7e-29

TAIR\|locus:2140386 AT4G19450 "AT4G19450" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1792 (635.9 bits), Expect = 9.4e-185, P = 9.4e-185
 Identities = 362/575 (62%), Positives = 411/575 (71%)

Query:    32 MAGQSRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGVSQVQLNYLATASDLGKLFGW 91
             MAGQSRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLG+SQVQLNYLA ASDLGK+FGW
Sbjct:     1 MAGQSRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGISQVQLNYLAVASDLGKVFGW 60

Query:    92 LSGLALMYFPLWVVLXXXXXXXXXXYGLQWLVISHVISLPYILVFFLCLLSGLSITWFNT 151
              SGLALMYFPLW VL          YG+QWLVI+H ISLPYI+VF  CLL+GLSI WFNT
Sbjct:    61 SSGLALMYFPLWTVLFAAAFMGFVGYGVQWLVITHFISLPYIMVFLCCLLAGLSICWFNT 120

Query:   152 VCFVLCIQNFPANRALALSLTVSFNGVSAAIYALAGNAINPSSHAXXXXXXXXXXXXXXX 211
             VCFVLCI NFPANR+LALSLTVSFNGVSAA+Y LA NAINP+S                 
Sbjct:   121 VCFVLCISNFPANRSLALSLTVSFNGVSAALYTLAYNAINPTSPELYLLLNALIPLIVSF 180

Query:   212 AALIPILRQPSLDPLPPEGVKRDSXXXXXXXXXXXXTGVYLLLFGAHSSDLTVSRXXXXX 271
              A+IPILRQP  +PLPP+GV+RDS             GVYLLLFG++SSDLT +R     
Sbjct:   181 TAIIPILRQPPFEPLPPDGVRRDSLMFLLLNILAALNGVYLLLFGSNSSDLTSARLLFGG 240

Query:   272 XXXXXXXXXCIPGIVYARDWFKRTIHSSFRLDGSGFLLIDVDDLELHKELLMREAEASNN 331
                      CIPG+V AR+W+ RTIH+SFRL+GSGF+L+D D+LELHK +L  EA  +  
Sbjct:   241 AILLLVFPLCIPGLVIARNWYNRTIHTSFRLEGSGFILVDPDELELHKGMLAHEA--NRE 298

Query:   332 GKELDQPLLSTDDI-SMTYSLTRTKSFEKGGCCETIIGKDQLAMLGEEHSARLLVLRLDF 390
             G +L    LS D + +   S+   +      CC+ +I +DQL  LG EHS  LL+ R DF
Sbjct:   299 GYQL----LSDDVVQNPVKSVAVEEEDSDESCCKKLITRDQLEGLGIEHSLSLLLTRSDF 354

Query:   391 WLYYIAYFCGGAIGLVYSNNLGQIAQXXXXXXXXXXXXXXXXXXXXXGRLLSAAPDYMRA 450
             WLYYI YFCGG IGLVYSNNLGQIAQ                     GRLLSA PDY+RA
Sbjct:   355 WLYYITYFCGGTIGLVYSNNLGQIAQSLGQSSNTTTLVTLYSAFSFFGRLLSATPDYIRA 414

Query:   451 KVYFARTGWLTIALLPTPVAFCLLATSGNAVALQAGTSLIGLSSGFIFAAAVSITSELFG 510
             KVYFARTGWL IALLPTP A  LLA+SG A ALQAGT+L+GLSSGFIFAAAVSITSELFG
Sbjct:   415 KVYFARTGWLAIALLPTPFALFLLASSGTASALQAGTALMGLSSGFIFAAAVSITSELFG 474

Query:   511 PNSVGVNHNILITNIPIGSLVYGFLAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTF 570
             PNSVGVNHNILITNIPIGSL+YGFLAA+VYDS+  +G    ++ S+SVVCMGR CY+LTF
Sbjct:   475 PNSVGVNHNILITNIPIGSLIYGFLAALVYDSHGFTGTK--SMTSESVVCMGRDCYYLTF 532

Query:   571 VLWGCXXXXXXXXXXXXXXRTRHAYDCFERKRLSS 605
             V WGC              RTR AY  FE+ R+SS
Sbjct:   533 VWWGCLSLLGLGSSLVLFIRTRRAYQRFEQARISS 567

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:1006230550 AT5G45275 "AT5G45275" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2206169 NFD4 "NUCLEAR FUSION DEFECTIVE 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2084183 AT3G01630 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2065730 AT2G30300 "AT2G30300" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_III000303	hypothetical protein (562 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		609
pfam06813		248	pfam06813, Nodulin-like, Nodulin-like	3e-92
TIGR00890		377	TIGR00890, 2A0111, oxalate/formate antiporter fami	3e-07

>gnl\|CDD\|219187 pfam06813, Nodulin-like, Nodulin-like	Back alignment and domain information

 Score =  283 bits (727), Expect = 3e-92
 Identities = 120/252 (47%), Positives = 155/252 (61%), Gaps = 11/252 (4%)

Query: 38  KWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGVSQVQLNYLATASDLGKLFGWLSGLAL 97
           +W+ LVA IWIQ+F G N+DFS YSS LKS LG SQVQLN L  A DLGK FGWLSGLA 
Sbjct: 1   RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60

Query: 98  MYFPLWVVLFMAAFMGFFGYGLQWLVISHVIS-LPYILVFFLCLLSGLSITWFNTVCFVL 156
            Y P WVVL + A MGF GYG+QWL ++  I  LPY L+     L+G SI WFNT   V 
Sbjct: 61  EYLPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVT 120

Query: 157 CIQNFPANRALALSLTVSFNGVSAAIYALAGNAINPSSHALYLLLNALIPLITSLAALIP 216
           CI+NFP +R + L +   + G+SAAIY     AI  +  +  LLLNAL+PL+ SL AL  
Sbjct: 121 CIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYF 180

Query: 217 ILRQPSLDPLPPEGVKR-DSFIFLILNIIAILTGVYLLLF--GAHSSDLTVSRLLFGGA- 272
           I   P        G +R +S +FL+ N++++   VYL+     + S DL+ +     GA 
Sbjct: 181 IRPCP-----GKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAI 235

Query: 273 -LFLLMFPLCIP 283
            + LL+ PL +P
Sbjct: 236 MVLLLLVPLAVP 247

This family represents a conserved region within plant nodulin-like proteins. Length = 248

>gnl\|CDD\|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		609
PTZ00207		591	hypothetical protein; Provisional	100.0
PF06813		250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	100.0
TIGR00890		377	2A0111 Oxalate/Formate Antiporter.	99.87
KOG2504		509	consensus Monocarboxylate transporter [Carbohydrat	99.85
TIGR00892		455	2A0113 monocarboxylate transporter 1.	99.77
PLN00028		476	nitrate transmembrane transporter; Provisional	99.73
PRK11551		406	putative 3-hydroxyphenylpropionic transporter MhpT	99.72
TIGR00893		399	2A0114 d-galactonate transporter.	99.69
PRK09556		467	uhpT sugar phosphate antiporter; Reviewed	99.69
PRK03699		394	putative transporter; Provisional	99.68
PRK11273		452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.67
PRK11663		434	regulatory protein UhpC; Provisional	99.66
PRK09705		393	cynX putative cyanate transporter; Provisional	99.61
PRK03545		390	putative arabinose transporter; Provisional	99.58
PRK12307		426	putative sialic acid transporter; Provisional	99.55
TIGR00879		481	SP MFS transporter, sugar porter (SP) family. This	99.55
TIGR00895		398	2A0115 benzoate transport.	99.53
TIGR00891		405	2A0112 putative sialic acid transporter.	99.53
PRK05122		399	major facilitator superfamily transporter; Provisi	99.52
TIGR02332		412	HpaX 4-hydroxyphenylacetate permease. This protein	99.51
TIGR00712		438	glpT glycerol-3-phosphate transporter. This model	99.49
TIGR00897		402	2A0118 polyol permease family. This family of prot	99.48
TIGR00881		379	2A0104 phosphoglycerate transporter family protein	99.48
cd06174		352	MFS The Major Facilitator Superfamily (MFS) is a l	99.46
PRK12382		392	putative transporter; Provisional	99.46
PRK15034		462	nitrate/nitrite transport protein NarU; Provisiona	99.45
TIGR00894		465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.44
PRK11646		400	multidrug resistance protein MdtH; Provisional	99.43
TIGR00898		505	2A0119 cation transport protein.	99.42
PRK03893		496	putative sialic acid transporter; Provisional	99.41
TIGR01299		742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.4
TIGR00896		355	CynX cyanate transporter. This family of proteins	99.39
TIGR00885		410	fucP L-fucose:H+ symporter permease. This family d	99.39
PRK10091		382	MFS transport protein AraJ; Provisional	99.37
PF07690		352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.35
PRK09874		408	drug efflux system protein MdtG; Provisional	99.35
TIGR00900		365	2A0121 H+ Antiporter protein.	99.35
PRK10213		394	nepI ribonucleoside transporter; Reviewed	99.35
PRK09528		420	lacY galactoside permease; Reviewed	99.35
TIGR00903		368	2A0129 major facilitator 4 family protein. This fa	99.33
TIGR00710		385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.32
PRK03633		381	putative MFS family transporter protein; Provision	99.32
PRK10504		471	putative transporter; Provisional	99.31
TIGR00889		418	2A0110 nucleoside transporter. This family of prot	99.29
PRK10489		417	enterobactin exporter EntS; Provisional	99.29
PRK10054		395	putative transporter; Provisional	99.27
TIGR00886		366	2A0108 nitrite extrusion protein (nitrite facilita	99.26
PRK11652		394	emrD multidrug resistance protein D; Provisional	99.26
PRK15402		406	multidrug efflux system translocase MdfA; Provisio	99.24
TIGR00899		375	2A0120 sugar efflux transporter. This family of pr	99.22
TIGR00887		502	2A0109 phosphate:H+ symporter. This model represen	99.21
TIGR00711		485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.19
PRK10077		479	xylE D-xylose transporter XylE; Provisional	99.19
PRK11043		401	putative transporter; Provisional	99.19
TIGR00902		382	2A0127 phenyl proprionate permease family protein.	99.18
PRK09952		438	shikimate transporter; Provisional	99.17
TIGR00883		394	2A0106 metabolite-proton symporter. This model rep	99.15
PRK10473		392	multidrug efflux system protein MdtL; Provisional	99.15
PRK10406		432	alpha-ketoglutarate transporter; Provisional	99.14
PRK14995		495	methyl viologen resistance protein SmvA; Provision	99.12
PRK15075		434	citrate-proton symporter; Provisional	99.12
PRK10642		490	proline/glycine betaine transporter; Provisional	99.1
TIGR00882		396	2A0105 oligosaccharide:H+ symporter.	99.1
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.09
PRK10133		438	L-fucose transporter; Provisional	99.08
COG2223		417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.04
PRK11128		382	putative 3-phenylpropionic acid transporter; Provi	99.03
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.01
PRK11010		491	ampG muropeptide transporter; Validated	98.98
PRK11102		377	bicyclomycin/multidrug efflux system; Provisional	98.97
PRK11902		402	ampG muropeptide transporter; Reviewed	98.95
COG2271		448	UhpC Sugar phosphate permease [Carbohydrate transp	98.9
KOG2532		466	consensus Permease of the major facilitator superf	98.88
PRK15011		393	sugar efflux transporter B; Provisional	98.85
PRK15403		413	multidrug efflux system protein MdtM; Provisional	98.77
TIGR00901		356	2A0125 AmpG-related permease.	98.76
TIGR00792		437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.74
COG0738		422	FucP Fucose permease [Carbohydrate transport and m	98.64
TIGR02718		390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.62
KOG2533		495	consensus Permease of the major facilitator superf	98.59
PRK09584		500	tppB putative tripeptide transporter permease; Rev	98.58
PRK11195		393	lysophospholipid transporter LplT; Provisional	98.55
COG2814		394	AraJ Arabinose efflux permease [Carbohydrate trans	98.52
TIGR01272		310	gluP glucose/galactose transporter. Disruption of	98.49
TIGR00710		385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.46
PRK10504		471	putative transporter; Provisional	98.45
PRK10213		394	nepI ribonucleoside transporter; Reviewed	98.43
PRK09669		444	putative symporter YagG; Provisional	98.42
PRK09848		448	glucuronide transporter; Provisional	98.36
TIGR00924		475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.34
cd06174		352	MFS The Major Facilitator Superfamily (MFS) is a l	98.29
PF07690		352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.27
PF03825		400	Nuc_H_symport: Nucleoside H+ symporter	98.26
PRK10091		382	MFS transport protein AraJ; Provisional	98.25
PRK11663		434	regulatory protein UhpC; Provisional	98.24
TIGR00900		365	2A0121 H+ Antiporter protein.	98.23
TIGR00924		475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.22
PRK10054		395	putative transporter; Provisional	98.18
PRK11102		377	bicyclomycin/multidrug efflux system; Provisional	98.16
PRK15402		406	multidrug efflux system translocase MdfA; Provisio	98.14
PRK03699		394	putative transporter; Provisional	98.13
PRK15403		413	multidrug efflux system protein MdtM; Provisional	98.13
TIGR00880		141	2_A_01_02 Multidrug resistance protein.	98.12
PRK10207		489	dipeptide/tripeptide permease B; Provisional	98.12
TIGR01299		742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.11
TIGR00893		399	2A0114 d-galactonate transporter.	98.11
PRK09874		408	drug efflux system protein MdtG; Provisional	98.07
PRK11043		401	putative transporter; Provisional	98.06
PRK03545		390	putative arabinose transporter; Provisional	98.05
PRK11652		394	emrD multidrug resistance protein D; Provisional	98.04
TIGR00895		398	2A0115 benzoate transport.	98.04
TIGR00892		455	2A0113 monocarboxylate transporter 1.	98.04
PRK10473		392	multidrug efflux system protein MdtL; Provisional	98.03
TIGR02332		412	HpaX 4-hydroxyphenylacetate permease. This protein	98.0
TIGR00711		485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.0
TIGR00891		405	2A0112 putative sialic acid transporter.	97.99
PF13347		428	MFS_2: MFS/sugar transport protein	97.99
TIGR00805		633	oat sodium-independent organic anion transporter.	97.96
PRK10429		473	melibiose:sodium symporter; Provisional	97.95
TIGR00788		468	fbt folate/biopterin transporter. The only functio	97.94
TIGR00806		511	rfc RFC reduced folate carrier. Proteins of the RF	97.93
PRK09584		500	tppB putative tripeptide transporter permease; Rev	97.93
TIGR00712		438	glpT glycerol-3-phosphate transporter. This model	97.92
TIGR00886		366	2A0108 nitrite extrusion protein (nitrite facilita	97.91
TIGR00881		379	2A0104 phosphoglycerate transporter family protein	97.91
TIGR00890		377	2A0111 Oxalate/Formate Antiporter.	97.91
PRK11551		406	putative 3-hydroxyphenylpropionic transporter MhpT	97.91
KOG0569		485	consensus Permease of the major facilitator superf	97.88
PF06609		599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.87
COG2807		395	CynX Cyanate permease [Inorganic ion transport and	97.87
PF05977		524	MFS_3: Transmembrane secretion effector; InterPro:	97.86
PF06609		599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.84
KOG2563		480	consensus Permease of the major facilitator superf	97.83
PRK14995		495	methyl viologen resistance protein SmvA; Provision	97.82
TIGR00879		481	SP MFS transporter, sugar porter (SP) family. This	97.82
PRK03893		496	putative sialic acid transporter; Provisional	97.8
PRK15462		493	dipeptide/tripeptide permease D; Provisional	97.78
PF01306		412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.75
PRK12307		426	putative sialic acid transporter; Provisional	97.73
PRK11195		393	lysophospholipid transporter LplT; Provisional	97.72
PRK11646		400	multidrug resistance protein MdtH; Provisional	97.72
PF11700		477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.71
PRK10489		417	enterobactin exporter EntS; Provisional	97.71
PRK09528		420	lacY galactoside permease; Reviewed	97.71
PRK09705		393	cynX putative cyanate transporter; Provisional	97.67
PRK09556		467	uhpT sugar phosphate antiporter; Reviewed	97.65
KOG0254		513	consensus Predicted transporter (major facilitator	97.63
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.59
TIGR00882		396	2A0105 oligosaccharide:H+ symporter.	97.56
PRK10207		489	dipeptide/tripeptide permease B; Provisional	97.55
PRK12382		392	putative transporter; Provisional	97.54
PTZ00207		591	hypothetical protein; Provisional	97.53
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.52
PRK11273		452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.5
PRK11010		491	ampG muropeptide transporter; Validated	97.5
COG2814		394	AraJ Arabinose efflux permease [Carbohydrate trans	97.42
TIGR00897		402	2A0118 polyol permease family. This family of prot	97.41
PLN00028		476	nitrate transmembrane transporter; Provisional	97.39
TIGR00899		375	2A0120 sugar efflux transporter. This family of pr	97.37
PRK03633		381	putative MFS family transporter protein; Provision	97.35
PRK15462		493	dipeptide/tripeptide permease D; Provisional	97.32
TIGR00889		418	2A0110 nucleoside transporter. This family of prot	97.29
TIGR00901		356	2A0125 AmpG-related permease.	97.28
TIGR00896		355	CynX cyanate transporter. This family of proteins	97.28
TIGR00898		505	2A0119 cation transport protein.	97.28
TIGR00894		465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.25
TIGR01301		477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.24
PRK15034		462	nitrate/nitrite transport protein NarU; Provisiona	97.22
PRK10077		479	xylE D-xylose transporter XylE; Provisional	97.21
PF00083		451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.15
KOG3764		464	consensus Vesicular amine transporter [Intracellul	97.13
TIGR00887		502	2A0109 phosphate:H+ symporter. This model represen	97.13
TIGR00903		368	2A0129 major facilitator 4 family protein. This fa	97.11
PRK10642		490	proline/glycine betaine transporter; Provisional	97.05
PRK05122		399	major facilitator superfamily transporter; Provisi	96.96
TIGR00805		633	oat sodium-independent organic anion transporter.	96.94
PRK15011		393	sugar efflux transporter B; Provisional	96.94
TIGR01301		477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.91
PRK11128		382	putative 3-phenylpropionic acid transporter; Provi	96.87
KOG0255		521	consensus Synaptic vesicle transporter SVOP and re	96.83
PRK09952		438	shikimate transporter; Provisional	96.78
TIGR00883		394	2A0106 metabolite-proton symporter. This model rep	96.73
TIGR00902		382	2A0127 phenyl proprionate permease family protein.	96.73
KOG2533		495	consensus Permease of the major facilitator superf	96.59
TIGR02718		390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.55
TIGR00880		141	2_A_01_02 Multidrug resistance protein.	96.48
PF05977		524	MFS_3: Transmembrane secretion effector; InterPro:	96.45
TIGR00792		437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.41
PRK11462		460	putative transporter; Provisional	96.4
PRK11902		402	ampG muropeptide transporter; Reviewed	96.4
COG2271		448	UhpC Sugar phosphate permease [Carbohydrate transp	96.36
KOG3764		464	consensus Vesicular amine transporter [Intracellul	96.32
KOG0253		528	consensus Synaptic vesicle transporter SV2 (major	96.3
PF03092		433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.29
TIGR00926		654	2A1704 Peptide:H+ symporter (also transports b-lac	96.26
PRK10406		432	alpha-ketoglutarate transporter; Provisional	96.25
TIGR00885		410	fucP L-fucose:H+ symporter permease. This family d	96.2
COG3104		498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.16
PF03825		400	Nuc_H_symport: Nucleoside H+ symporter	96.15
KOG0255		521	consensus Synaptic vesicle transporter SVOP and re	95.72
PRK15075		434	citrate-proton symporter; Provisional	95.71
TIGR00806		511	rfc RFC reduced folate carrier. Proteins of the RF	95.68
KOG0252		538	consensus Inorganic phosphate transporter [Inorgan	95.58
KOG4686		459	consensus Predicted sugar transporter [Carbohydrat	95.43
KOG0254		513	consensus Predicted transporter (major facilitator	94.85
TIGR00788		468	fbt folate/biopterin transporter. The only functio	94.78
PRK09669		444	putative symporter YagG; Provisional	94.65
PF03209		403	PUCC: PUCC protein; InterPro: IPR004896 This prote	94.29
KOG2504		509	consensus Monocarboxylate transporter [Carbohydrat	94.29
KOG2615		451	consensus Permease of the major facilitator superf	94.26
PRK10133		438	L-fucose transporter; Provisional	94.25
PRK09848		448	glucuronide transporter; Provisional	94.15
COG2807		395	CynX Cyanate permease [Inorganic ion transport and	94.04
COG2270		438	Permeases of the major facilitator superfamily [Ge	93.35
PF13347		428	MFS_2: MFS/sugar transport protein	93.11
COG2211		467	MelB Na+/melibiose symporter and related transport	91.58
PRK10429		473	melibiose:sodium symporter; Provisional	90.25
KOG2532		466	consensus Permease of the major facilitator superf	89.85
PF00854		372	PTR2: POT family; InterPro: IPR000109 This entry r	89.69
KOG0252		538	consensus Inorganic phosphate transporter [Inorgan	89.14
TIGR01272		310	gluP glucose/galactose transporter. Disruption of	87.93
PF05978		156	UNC-93: Ion channel regulatory protein UNC-93; Int	87.41
TIGR00939		437	2a57 Equilibrative Nucleoside Transporter (ENT).	86.81
PRK11462		460	putative transporter; Provisional	84.72
KOG2325		488	consensus Predicted transporter/transmembrane prot	83.72
PF11700		477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	83.32
KOG1330		493	consensus Sugar transporter/spinster transmembrane	83.3
KOG3098		461	consensus Uncharacterized conserved protein [Funct	83.07
PF00083		451	Sugar_tr: Sugar (and other) transporter; InterPro:	82.88
COG0477		338	ProP Permeases of the major facilitator superfamil	82.57
COG0738		422	FucP Fucose permease [Carbohydrate transport and m	80.78
PF03209		403	PUCC: PUCC protein; InterPro: IPR004896 This prote	80.76

>PTZ00207 hypothetical protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.9e-78  Score=679.78  Aligned_cols=511  Identities=19%  Similarity=0.214  Sum_probs=407.1

Q ss_pred             cCCchHHHHHHHHHHHHhcCCccccccccHHHHHHhCCChhhhhHHHHhhhcccchhhhhhhhhhhhhHHHHHHHHHHHH
Q 046386           34 GQSRKWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGVSQVQLNYLATASDLGKLFGWLSGLALMYFPLWVVLFMAAFMG  113 (609)
Q Consensus        34 ~~~~Rw~~lvas~~v~l~~Gt~Y~fs~YS~~lk~~L~~sq~qln~I~~a~~lG~~~G~~sGll~~~~P~~~vllig~~~~  113 (609)
                      +|.+||+++++++|+++|+|+.|.|++|++++|+++|+||+|+|.++..+.....+++++|.++|++|+|.++++|.++.
T Consensus        22 ~e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~  101 (591)
T PTZ00207         22 NEPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVF  101 (591)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999988887543322233348899999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCcchhHHHHHHHHHhhcchhhhhhHHHHHHHHhcCCCCcchhhhhhhhhhhhHHHHHHHHhhhCCC
Q 046386          114 FFGYGLQWLVISHVISLPYILVFFLCLLSGLSITWFNTVCFVLCIQNFPANRALALSLTVSFNGVSAAIYALAGNAINPS  193 (609)
Q Consensus       114 ~~GY~~~~l~~~~~~~~~~~~l~~~~~l~G~g~~~~~taalvT~~kNFP~~RG~avgl~k~~~GLSaaI~s~i~~~~f~~  193 (609)
                      ++||.+.|+.+++.+..++|.++++.++.|+|++++++++++++++|||++||.++|+.+++.|++++++++++..++.+
T Consensus       102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~  181 (591)
T PTZ00207        102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD  181 (591)
T ss_pred             HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988877666789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCC---CCCcch-----------------hhHHHHHHHHHHHHHHH
Q 046386          194 SHALYLLLNALIPLITSLAALIPILRQPSLDPLPPEG---VKRDSF-----------------IFLILNIIAILTGVYLL  253 (609)
Q Consensus       194 d~~~fLllla~~p~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------------~F~~~~~i~v~l~~yl~  253 (609)
                      |.+.+++++++.+.+++++.++ ++|.|+++....++   +++++.                 .|.+++.+++++++|++
T Consensus       182 ~~~~~fl~l~vl~~vv~ll~~~-~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~  260 (591)
T PTZ00207        182 NTSAYFFFLMSFALVVGILAIV-FMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLP  260 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHh-heeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHH
Confidence            9999999999999999998855 55666554332111   122333                 68899999999999999


Q ss_pred             HHhhccC---cchhhHHHHHH-HH-HHHHhh-cccccccccccccccccccccccCCCCccccCCCchhHHHHHhhHhhh
Q 046386          254 LFGAHSS---DLTVSRLLFGG-AL-FLLMFP-LCIPGIVYARDWFKRTIHSSFRLDGSGFLLIDVDDLELHKELLMREAE  327 (609)
Q Consensus       254 v~~~~~~---~~~~~~~~~~g-~~-~ll~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (609)
                      +++++++   .....+..+.+ ++ ++++.| +++|+...     ++..+     ++       ++++|..+. .  +  
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~-----~~~~~-----~~-------~~~~~~~~~-~--~--  318 (591)
T PTZ00207        261 LQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTF-----DGKRP-----HD-------DSDGKAKEH-V--E--  318 (591)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHh-----ccCCc-----CC-------Ccccccccc-c--c--
Confidence            9999884   12233333333 34 666678 78887531     11100     00       000000000 0  0  


Q ss_pred             hccCCCCCCCCCcccccccccccccccccccCCCcccccccccchhhcccCchHHHHhhhHHHHHHHHHHHhhcccccee
Q 046386          328 ASNNGKELDQPLLSTDDISMTYSLTRTKSFEKGGCCETIIGKDQLAMLGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVY  407 (609)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Fwll~~~~~~g~g~Glm~  407 (609)
                            ++.+.             . +   +++.+.++..  |...|+.++ |++|.+++.|||++|++++||.|+|+++
T Consensus       319 ------~~~~~-------------~-~---~~~~~~~~~~--~~~~P~~~~-t~~q~l~~~d~Wll~~~~~cg~g~gl~~  372 (591)
T PTZ00207        319 ------AGEEV-------------S-A---AEDKVVETDV--DYIAPQFQE-TFIEGLKTARLWCLLWSIFCCVGAHFVI  372 (591)
T ss_pred             ------ccccc-------------c-c---cccccccccc--cCCCCCCcc-hHHHHHhchhHHHHHHHHHHhhCchhee
Confidence                  00000             0 0   0000000000  111123445 9999999999999999999999999999


Q ss_pred             ecchhHHHHHh-cCCccc--ch-hhHHHHHhhhhhhhhccchhhhhhhcc----cchhHHHHHHHHHHHHHHHHHHhcCC
Q 046386          408 SNNLGQIAQSL-GESSRT--TT-LLTLYSSFSFFGRLLSAAPDYMRAKVY----FARTGWLTIALLPTPVAFCLLATSGN  479 (609)
Q Consensus       408 I~n~g~I~~al-~~~~~~--~~-~VSl~Si~n~~GRl~~g~SD~l~~~~~----~~R~~~l~~~~~~~~~~~ll~~~~~~  479 (609)
                      |||++||+|++ |++.+.  ++ +||++|+||++||+++|+-|.+.+|++    +||+.++.+.++ |++++++++ ...
T Consensus       373 ~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~-~~~  450 (591)
T PTZ00207        373 IFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLF-LTL  450 (591)
T ss_pred             eecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHH-HHC
Confidence            99999999999 663333  44 899999999999999996555556555    899999999887 888888887 445


Q ss_pred             c-chhHHHHHHHHhhhcchhhhHHHHHHHhhCCCCchhhhhHHHhhhhhHHHHH-HHHHHHHhhccCCCCCCcCcccCCC
Q 046386          480 A-VALQAGTSLIGLSSGFIFAAAVSITSELFGPNSVGVNHNILITNIPIGSLVY-GFLAAIVYDSNVSSGIGIGNVVSDS  557 (609)
Q Consensus       480 ~-~~l~~~s~liG~~yG~~f~~~P~i~se~FG~k~fg~nyg~~~~a~~~gs~~~-~~i~g~iyD~~~~~~~~~~~~~~~~  557 (609)
                      | ..||++++++|+|||++|+++|++++|+|| ||||+|||++.++.|+|++++ .+++|++||+|++|++        +
T Consensus       451 p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~--------~  521 (591)
T PTZ00207        451 PKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLG--------Q  521 (591)
T ss_pred             CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCC--------C
Confidence            6 899999999999999999999999999999 999999999999999999999 5799999999998743        4


Q ss_pred             cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--Hhhhcc
Q 046386          558 VVCMGRHCYFLTFVLWGCVSVVGLAASVLLFLRTRHAYDCF--ERKRLS  604 (609)
Q Consensus       558 ~~C~G~~Cy~~tF~i~a~~~~~~~~~sl~l~~r~r~~y~~~--~~~~~~  604 (609)
                      ..|.|++||+.+|+|++++|++|+++++++++||||+|++.  .|+|+|
T Consensus       522 ~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~~~~~~~~~~  570 (591)
T PTZ00207        522 DVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCLKALEERRRIR  570 (591)
T ss_pred             CeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999855  555554

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins	Back alignment and domain information

>TIGR00890 2A0111 Oxalate/Formate Antiporter	Back alignment and domain information

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00892 2A0113 monocarboxylate transporter 1	Back alignment and domain information

>PLN00028 nitrate transmembrane transporter; Provisional	Back alignment and domain information

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	Back alignment and domain information

>TIGR00893 2A0114 d-galactonate transporter	Back alignment and domain information

>PRK09556 uhpT sugar phosphate antiporter; Reviewed	Back alignment and domain information

>PRK03699 putative transporter; Provisional	Back alignment and domain information

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional	Back alignment and domain information

>PRK11663 regulatory protein UhpC; Provisional	Back alignment and domain information

>PRK09705 cynX putative cyanate transporter; Provisional	Back alignment and domain information

>PRK03545 putative arabinose transporter; Provisional	Back alignment and domain information

>PRK12307 putative sialic acid transporter; Provisional	Back alignment and domain information

>TIGR00879 SP MFS transporter, sugar porter (SP) family	Back alignment and domain information

>TIGR00895 2A0115 benzoate transport	Back alignment and domain information

>TIGR00891 2A0112 putative sialic acid transporter	Back alignment and domain information

>PRK05122 major facilitator superfamily transporter; Provisional	Back alignment and domain information

>TIGR02332 HpaX 4-hydroxyphenylacetate permease	Back alignment and domain information

>TIGR00712 glpT glycerol-3-phosphate transporter	Back alignment and domain information

>TIGR00897 2A0118 polyol permease family	Back alignment and domain information

>TIGR00881 2A0104 phosphoglycerate transporter family protein	Back alignment and domain information

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>PRK12382 putative transporter; Provisional	Back alignment and domain information

>PRK15034 nitrate/nitrite transport protein NarU; Provisional	Back alignment and domain information

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter	Back alignment and domain information

>PRK11646 multidrug resistance protein MdtH; Provisional	Back alignment and domain information

>TIGR00898 2A0119 cation transport protein	Back alignment and domain information

>PRK03893 putative sialic acid transporter; Provisional	Back alignment and domain information

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2	Back alignment and domain information

>TIGR00896 CynX cyanate transporter	Back alignment and domain information

>TIGR00885 fucP L-fucose:H+ symporter permease	Back alignment and domain information

>PRK10091 MFS transport protein AraJ; Provisional	Back alignment and domain information

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms	Back alignment and domain information

>PRK09874 drug efflux system protein MdtG; Provisional	Back alignment and domain information

>TIGR00900 2A0121 H+ Antiporter protein	Back alignment and domain information

>PRK10213 nepI ribonucleoside transporter; Reviewed	Back alignment and domain information

>PRK09528 lacY galactoside permease; Reviewed	Back alignment and domain information

>TIGR00903 2A0129 major facilitator 4 family protein	Back alignment and domain information

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily	Back alignment and domain information

>PRK03633 putative MFS family transporter protein; Provisional	Back alignment and domain information

>PRK10504 putative transporter; Provisional	Back alignment and domain information

>TIGR00889 2A0110 nucleoside transporter	Back alignment and domain information

>PRK10489 enterobactin exporter EntS; Provisional	Back alignment and domain information

>PRK10054 putative transporter; Provisional	Back alignment and domain information

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)	Back alignment and domain information

>PRK11652 emrD multidrug resistance protein D; Provisional	Back alignment and domain information

>PRK15402 multidrug efflux system translocase MdfA; Provisional	Back alignment and domain information

>TIGR00899 2A0120 sugar efflux transporter	Back alignment and domain information

>TIGR00887 2A0109 phosphate:H+ symporter	Back alignment and domain information

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily	Back alignment and domain information

>PRK10077 xylE D-xylose transporter XylE; Provisional	Back alignment and domain information

>PRK11043 putative transporter; Provisional	Back alignment and domain information

>TIGR00902 2A0127 phenyl proprionate permease family protein	Back alignment and domain information

>PRK09952 shikimate transporter; Provisional	Back alignment and domain information

>TIGR00883 2A0106 metabolite-proton symporter	Back alignment and domain information

>PRK10473 multidrug efflux system protein MdtL; Provisional	Back alignment and domain information

>PRK10406 alpha-ketoglutarate transporter; Provisional	Back alignment and domain information

>PRK14995 methyl viologen resistance protein SmvA; Provisional	Back alignment and domain information

>PRK15075 citrate-proton symporter; Provisional	Back alignment and domain information

>PRK10642 proline/glycine betaine transporter; Provisional	Back alignment and domain information

>TIGR00882 2A0105 oligosaccharide:H+ symporter	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK10133 L-fucose transporter; Provisional	Back alignment and domain information

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PRK11010 ampG muropeptide transporter; Validated	Back alignment and domain information

>PRK11102 bicyclomycin/multidrug efflux system; Provisional	Back alignment and domain information

>PRK11902 ampG muropeptide transporter; Reviewed	Back alignment and domain information

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK15011 sugar efflux transporter B; Provisional	Back alignment and domain information

>PRK15403 multidrug efflux system protein MdtM; Provisional	Back alignment and domain information

>TIGR00901 2A0125 AmpG-related permease	Back alignment and domain information

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter	Back alignment and domain information

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family	Back alignment and domain information

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK09584 tppB putative tripeptide transporter permease; Reviewed	Back alignment and domain information

>PRK11195 lysophospholipid transporter LplT; Provisional	Back alignment and domain information

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01272 gluP glucose/galactose transporter	Back alignment and domain information

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily	Back alignment and domain information

>PRK10504 putative transporter; Provisional	Back alignment and domain information

>PRK10213 nepI ribonucleoside transporter; Reviewed	Back alignment and domain information

>PRK09669 putative symporter YagG; Provisional	Back alignment and domain information

>PRK09848 glucuronide transporter; Provisional	Back alignment and domain information

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial	Back alignment and domain information

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms	Back alignment and domain information

>PF03825 Nuc_H_symport: Nucleoside H+ symporter	Back alignment and domain information

>PRK10091 MFS transport protein AraJ; Provisional	Back alignment and domain information

>PRK11663 regulatory protein UhpC; Provisional	Back alignment and domain information

>TIGR00900 2A0121 H+ Antiporter protein	Back alignment and domain information

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial	Back alignment and domain information

>PRK10054 putative transporter; Provisional	Back alignment and domain information

>PRK11102 bicyclomycin/multidrug efflux system; Provisional	Back alignment and domain information

>PRK15402 multidrug efflux system translocase MdfA; Provisional	Back alignment and domain information

>PRK03699 putative transporter; Provisional	Back alignment and domain information

>PRK15403 multidrug efflux system protein MdtM; Provisional	Back alignment and domain information

>TIGR00880 2_A_01_02 Multidrug resistance protein	Back alignment and domain information

>PRK10207 dipeptide/tripeptide permease B; Provisional	Back alignment and domain information

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2	Back alignment and domain information

>TIGR00893 2A0114 d-galactonate transporter	Back alignment and domain information

>PRK09874 drug efflux system protein MdtG; Provisional	Back alignment and domain information

>PRK11043 putative transporter; Provisional	Back alignment and domain information

>PRK03545 putative arabinose transporter; Provisional	Back alignment and domain information

>PRK11652 emrD multidrug resistance protein D; Provisional	Back alignment and domain information

>TIGR00895 2A0115 benzoate transport	Back alignment and domain information

>TIGR00892 2A0113 monocarboxylate transporter 1	Back alignment and domain information

>PRK10473 multidrug efflux system protein MdtL; Provisional	Back alignment and domain information

>TIGR02332 HpaX 4-hydroxyphenylacetate permease	Back alignment and domain information

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily	Back alignment and domain information

>TIGR00891 2A0112 putative sialic acid transporter	Back alignment and domain information

>PF13347 MFS_2: MFS/sugar transport protein	Back alignment and domain information

>TIGR00805 oat sodium-independent organic anion transporter	Back alignment and domain information

>PRK10429 melibiose:sodium symporter; Provisional	Back alignment and domain information

>TIGR00788 fbt folate/biopterin transporter	Back alignment and domain information

>TIGR00806 rfc RFC reduced folate carrier	Back alignment and domain information

>PRK09584 tppB putative tripeptide transporter permease; Reviewed	Back alignment and domain information

>TIGR00712 glpT glycerol-3-phosphate transporter	Back alignment and domain information

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)	Back alignment and domain information

>TIGR00881 2A0104 phosphoglycerate transporter family protein	Back alignment and domain information

>TIGR00890 2A0111 Oxalate/Formate Antiporter	Back alignment and domain information

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	Back alignment and domain information

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins	Back alignment and domain information

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily	Back alignment and domain information

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins	Back alignment and domain information

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>PRK14995 methyl viologen resistance protein SmvA; Provisional	Back alignment and domain information

>TIGR00879 SP MFS transporter, sugar porter (SP) family	Back alignment and domain information

>PRK03893 putative sialic acid transporter; Provisional	Back alignment and domain information

>PRK15462 dipeptide/tripeptide permease D; Provisional	Back alignment and domain information

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []	Back alignment and domain information

>PRK12307 putative sialic acid transporter; Provisional	Back alignment and domain information

>PRK11195 lysophospholipid transporter LplT; Provisional	Back alignment and domain information

>PRK11646 multidrug resistance protein MdtH; Provisional	Back alignment and domain information

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions	Back alignment and domain information

>PRK10489 enterobactin exporter EntS; Provisional	Back alignment and domain information

>PRK09528 lacY galactoside permease; Reviewed	Back alignment and domain information

>PRK09705 cynX putative cyanate transporter; Provisional	Back alignment and domain information

>PRK09556 uhpT sugar phosphate antiporter; Reviewed	Back alignment and domain information

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>TIGR00882 2A0105 oligosaccharide:H+ symporter	Back alignment and domain information

>PRK10207 dipeptide/tripeptide permease B; Provisional	Back alignment and domain information

>PRK12382 putative transporter; Provisional	Back alignment and domain information

>PTZ00207 hypothetical protein; Provisional	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional	Back alignment and domain information

>PRK11010 ampG muropeptide transporter; Validated	Back alignment and domain information

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00897 2A0118 polyol permease family	Back alignment and domain information

>PLN00028 nitrate transmembrane transporter; Provisional	Back alignment and domain information

>TIGR00899 2A0120 sugar efflux transporter	Back alignment and domain information

>PRK03633 putative MFS family transporter protein; Provisional	Back alignment and domain information

>PRK15462 dipeptide/tripeptide permease D; Provisional	Back alignment and domain information

>TIGR00889 2A0110 nucleoside transporter	Back alignment and domain information

>TIGR00901 2A0125 AmpG-related permease	Back alignment and domain information

>TIGR00896 CynX cyanate transporter	Back alignment and domain information

>TIGR00898 2A0119 cation transport protein	Back alignment and domain information

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter	Back alignment and domain information

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter	Back alignment and domain information

>PRK15034 nitrate/nitrite transport protein NarU; Provisional	Back alignment and domain information

>PRK10077 xylE D-xylose transporter XylE; Provisional	Back alignment and domain information

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters	Back alignment and domain information

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR00887 2A0109 phosphate:H+ symporter	Back alignment and domain information

>TIGR00903 2A0129 major facilitator 4 family protein	Back alignment and domain information

>PRK10642 proline/glycine betaine transporter; Provisional	Back alignment and domain information

>PRK05122 major facilitator superfamily transporter; Provisional	Back alignment and domain information

>TIGR00805 oat sodium-independent organic anion transporter	Back alignment and domain information

>PRK15011 sugar efflux transporter B; Provisional	Back alignment and domain information

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter	Back alignment and domain information

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional	Back alignment and domain information

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PRK09952 shikimate transporter; Provisional	Back alignment and domain information

>TIGR00883 2A0106 metabolite-proton symporter	Back alignment and domain information

>TIGR00902 2A0127 phenyl proprionate permease family protein	Back alignment and domain information

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family	Back alignment and domain information

>TIGR00880 2_A_01_02 Multidrug resistance protein	Back alignment and domain information

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily	Back alignment and domain information

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter	Back alignment and domain information

>PRK11462 putative transporter; Provisional	Back alignment and domain information

>PRK11902 ampG muropeptide transporter; Reviewed	Back alignment and domain information

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins	Back alignment and domain information

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)	Back alignment and domain information

>PRK10406 alpha-ketoglutarate transporter; Provisional	Back alignment and domain information

>TIGR00885 fucP L-fucose:H+ symporter permease	Back alignment and domain information

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]	Back alignment and domain information

>PF03825 Nuc_H_symport: Nucleoside H+ symporter	Back alignment and domain information

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PRK15075 citrate-proton symporter; Provisional	Back alignment and domain information

>TIGR00806 rfc RFC reduced folate carrier	Back alignment and domain information

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00788 fbt folate/biopterin transporter	Back alignment and domain information

>PRK09669 putative symporter YagG; Provisional	Back alignment and domain information

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon	Back alignment and domain information

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>PRK10133 L-fucose transporter; Provisional	Back alignment and domain information

>PRK09848 glucuronide transporter; Provisional	Back alignment and domain information

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>PF13347 MFS_2: MFS/sugar transport protein	Back alignment and domain information

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10429 melibiose:sodium symporter; Provisional	Back alignment and domain information

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters	Back alignment and domain information

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR01272 gluP glucose/galactose transporter	Back alignment and domain information

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans	Back alignment and domain information

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)	Back alignment and domain information

>PRK11462 putative transporter; Provisional	Back alignment and domain information

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]	Back alignment and domain information

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions	Back alignment and domain information

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters	Back alignment and domain information

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]	Back alignment and domain information

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		609
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 79/505 (15%), Positives = 146/505 (28%), Gaps = 148/505 (29%)

Query: 38  KWMILVATIWIQAFTGTNFDFSAYSSDLKSVLGVSQVQLNYLAT-ASDLGKLFGWLSGLA 96
           K++    +         +     Y      +   +QV   Y  +      KL   L  L 
Sbjct: 92  KFL---MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 97  LMYFP-LWVVLFMAAFMGFFGYGLQWLVISHVISLPYIL-----VFFL----CLLSGLSI 146
               P   V++      G  G G  W+ +   +S          +F+L    C      +
Sbjct: 149 ----PAKNVLID-----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 147 TWFNTVCFVLCIQNFPANRALALSLTVSFNGVSAAIYALAGNAINPSSHALYLL------ 200
                + + +   N+ +    + ++ +  + + A +  L  +      + L +L      
Sbjct: 200 EMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--NCLLVLLNVQNA 256

Query: 201 --LNAL-----IPLIT-------------------------------SLAALIPILRQPS 222
              NA      I L+T                                 + L+  L    
Sbjct: 257 KAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 223 LDPLPPEGVKRDSFIFLILNIIAILTGVYLLLFG----------AHSSDLTVSRLLFGG- 271
            D LP E +  +      L+IIA      L  +               + +++ L     
Sbjct: 316 QD-LPREVLTTNP---RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 272 -ALF--LLMFP--LCIPGIVYARDWFKRTIHSSFRLDGSGFLLIDVDDL--ELHKELLMR 324
             +F  L +FP    IP I+ +  WF                  DV  +  +LHK  L+ 
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------------SDVMVVVNKLHKYSLVE 418

Query: 325 EAEASNNGKELDQPLLSTDDISMTYSLTRTKSFEKGGCCETIIGKDQLAMLGEEHSARLL 384
                   K+  +  +S   I   Y   + K   +     +I+  D   +     S  L+
Sbjct: 419 --------KQPKESTISIPSI---YLELKVKLENEYALHRSIV--DHYNIPKTFDSDDLI 465

Query: 385 VLRLD-FWLYYIAYFCGGAIGLVYSNNLGQIAQSLGESSRTTTLLTLYSSFSFFGRLLSA 443
              LD ++  +I +            +L  I        R T    ++  F F       
Sbjct: 466 PPYLDQYFYSHIGH------------HLKNIEH----PERMTLFRMVFLDFRF------- 502

Query: 444 APDYMRAKVYFARTGWLTIA-LLPT 467
               +  K+    T W     +L T
Sbjct: 503 ----LEQKIRHDSTAWNASGSILNT 523

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		609
1pw4_A		451	Glycerol-3-phosphate transporter; transmembrane, i	99.77
3o7q_A		438	L-fucose-proton symporter; transporter, multi-PASS	99.73
4aps_A		491	DI-OR tripeptide H+ symporter; transport protein,	99.42
2gfp_A		375	EMRD, multidrug resistance protein D; membrane pro	99.33
2cfq_A		417	Lactose permease; transport, transport mechanism,	99.18
2xut_A		524	Proton/peptide symporter family protein; transport	98.99
4gc0_A		491	D-xylose-proton symporter; MFS, transport protein;	98.95
4aps_A		491	DI-OR tripeptide H+ symporter; transport protein,	98.51
1pw4_A		451	Glycerol-3-phosphate transporter; transmembrane, i	98.45
2xut_A		524	Proton/peptide symporter family protein; transport	98.17
3o7q_A		438	L-fucose-proton symporter; transporter, multi-PASS	98.14
2gfp_A		375	EMRD, multidrug resistance protein D; membrane pro	98.02
2cfq_A		417	Lactose permease; transport, transport mechanism,	96.29
4gc0_A		491	D-xylose-proton symporter; MFS, transport protein;	96.24

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1	Back alignment and structure

Probab=99.77  E-value=2.7e-17  Score=175.52  Aligned_cols=405  Identities=13%  Similarity=0.001  Sum_probs=248.6

Q ss_pred             chHHHHHHHHHHHHhcC-CccccccccHHHHHHhCCChhhhhHHHHhhhcccch-hhhhhhhhhhhhHHHHHHHHHHHHH
Q 046386           37 RKWMILVATIWIQAFTG-TNFDFSAYSSDLKSVLGVSQVQLNYLATASDLGKLF-GWLSGLALMYFPLWVVLFMAAFMGF  114 (609)
Q Consensus        37 ~Rw~~lvas~~v~l~~G-t~Y~fs~YS~~lk~~L~~sq~qln~I~~a~~lG~~~-G~~sGll~~~~P~~~vllig~~~~~  114 (609)
                      .||..+.+........+ ..+.++.+-|.+.+++ +|..|...+..+..+|..+ ..+.|.+.|..++..+++++.++..
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence            35666655555554444 4577888889999999 9999999999999998844 6777999999988888888877777


Q ss_pred             HHHHHHHHHHhhcCcchhHHHHHHHHHhhcchhhhhhHHHHHHHHhcC-CCCcchhhhhhhhhhhhHHHHHHHHhhhCCC
Q 046386          115 FGYGLQWLVISHVISLPYILVFFLCLLSGLSITWFNTVCFVLCIQNFP-ANRALALSLTVSFNGVSAAIYALAGNAINPS  193 (609)
Q Consensus       115 ~GY~~~~l~~~~~~~~~~~~l~~~~~l~G~g~~~~~taalvT~~kNFP-~~RG~avgl~k~~~GLSaaI~s~i~~~~f~~  193 (609)
                      ++..+.......  ...+|.+.+..++.|.+.+..+.+......+.|| ++||.+.|+.-...+++..+...+...+.  
T Consensus       104 ~~~~~~~~~~~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~--  179 (451)
T 1pw4_A          104 AVMLFMGFVPWA--TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM--  179 (451)
T ss_dssp             HHHHHHHHCHHH--HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH--
T ss_pred             HHHHHHHhhhhc--cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            777665432111  1124566666778888888888888888999999 77999999998888888777665543211  


Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccCcchhhHHHHHHHH
Q 046386          194 SHALYLLLNALIPLITSLAALIPILRQPSLDPLPPEGVKRDSFIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGGAL  273 (609)
Q Consensus       194 d~~~fLllla~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~i~v~l~~yl~v~~~~~~~~~~~~~~~~g~~  273 (609)
                                         .     ...           +....|.....+.++.++                      +
T Consensus       180 -------------------~-----~~g-----------~w~~~f~~~~~~~~~~~~----------------------~  202 (451)
T 1pw4_A          180 -------------------A-----WFN-----------DWHAALYMPAFCAILVAL----------------------F  202 (451)
T ss_dssp             -------------------H-----HTC-----------CSTTCTHHHHHHHHHHHH----------------------H
T ss_pred             -------------------H-----Hhc-----------cHHHHHHHHHHHHHHHHH----------------------H
Confidence                               0     000           011122211111111100                      0


Q ss_pred             HHHHhhcccccccccccccccccccccccCCCCccccCCCchhHHHHHhhHhhhhccCCCCCCCCCcccccccccccccc
Q 046386          274 FLLMFPLCIPGIVYARDWFKRTIHSSFRLDGSGFLLIDVDDLELHKELLMREAEASNNGKELDQPLLSTDDISMTYSLTR  353 (609)
Q Consensus       274 ~ll~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (609)
                      ..+..    |-            .+.. .+..      ++++++.+.    +        ++.               . 
T Consensus       203 ~~~~~----~~------------~~~~-~~~~------~~~~~~~~~----~--------~~~---------------~-  231 (451)
T 1pw4_A          203 AFAMM----RD------------TPQS-CGLP------PIEEYKNDY----P--------DDY---------------N-  231 (451)
T ss_dssp             HHHHC----CC------------SSTT-TCCC------SCTTTCCC----------------------------------
T ss_pred             HHhhc----cC------------CHhh-cCCC------Chhhhcccc----c--------ccc---------------h-
Confidence            11111    10            0000 0000      000000000    0        000               0 


Q ss_pred             cccccCCCcccccccccchhhcccCchHHHHhhhHHHHHHHHHHHhhccccceeecchhHHHHH-hcCCc-ccchhhHHH
Q 046386          354 TKSFEKGGCCETIIGKDQLAMLGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQS-LGESS-RTTTLLTLY  431 (609)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Fwll~~~~~~g~g~Glm~I~n~g~I~~a-l~~~~-~~~~~VSl~  431 (609)
                      ++ .+         ++    ....+...++.++++.+|.+.+..++......++........++ ++.+. ......++.
T Consensus       232 ~~-~~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  297 (451)
T 1pw4_A          232 EK-AE---------QE----LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY  297 (451)
T ss_dssp             ---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred             hh-hh---------cc----cccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            00 00         00    00011124678899999998887766443222333444444444 34432 245677888


Q ss_pred             HHhhhhhhhhcc-chhhhhhhcccchhHHHHHHHHHHH-HHHHHHHhcC--CcchhHHHHHHHHhhhcchhhhHHHHHHH
Q 046386          432 SSFSFFGRLLSA-APDYMRAKVYFARTGWLTIALLPTP-VAFCLLATSG--NAVALQAGTSLIGLSSGFIFAAAVSITSE  507 (609)
Q Consensus       432 Si~n~~GRl~~g-~SD~l~~~~~~~R~~~l~~~~~~~~-~~~ll~~~~~--~~~~l~~~s~liG~~yG~~f~~~P~i~se  507 (609)
                      .+.+.+|+++.| ++|++.+  + +|. .+.+...+.. ++.+++...+  +...+.+...+.|++++..+....+++.|
T Consensus       298 ~~~~~~~~~~~g~l~~~~~~--~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  373 (451)
T 1pw4_A          298 EYAGIPGTLLCGWMSDKVFR--G-NRG-ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE  373 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTST--T-CHH-HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc--C-Cch-hHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            888999999988 4554310  2 222 2333222333 4444433222  33456677888999999999999999999


Q ss_pred             hhCCCCchhhhhHHHhhhhh-HHHHHHHHHHHHhhccCCCCCCcCcccCCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 046386          508 LFGPNSVGVNHNILITNIPI-GSLVYGFLAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTFVLWGCVSVVGLAASVL  586 (609)
Q Consensus       508 ~FG~k~fg~nyg~~~~a~~~-gs~~~~~i~g~iyD~~~~~~~~~~~~~~~~~~C~G~~Cy~~tF~i~a~~~~~~~~~sl~  586 (609)
                      .+..++.|+.+|+..+...+ |..+++.+.|.++|..+                     |+.+|.+.+++++++.++.++
T Consensus       374 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g---------------------~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG---------------------WDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC---------------------SHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------------cHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888 99999999999999753                     899999999988888887776


Q ss_pred             HHHHHhh
Q 046386          587 LFLRTRH  593 (609)
Q Consensus       587 l~~r~r~  593 (609)
                      +..+.++
T Consensus       433 ~~~~~~~  439 (451)
T 1pw4_A          433 VMIGEKR  439 (451)
T ss_dssp             HHHHHHH
T ss_pred             HHhhhhh
Confidence            6544433

PyMOL of 1pw4

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*	Back alignment and structure

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}	Back alignment and structure

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}	Back alignment and structure

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*	Back alignment and structure

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}	Back alignment and structure

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*	Back alignment and structure

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}	Back alignment and structure

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1	Back alignment and structure

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}	Back alignment and structure

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*	Back alignment and structure

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}	Back alignment and structure

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*	Back alignment and structure

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		609
d1pw4a_		447	Glycerol-3-phosphate transporter {Escherichia coli	99.79
d1pv7a_		417	Lactose permease {Escherichia coli [TaxId: 562]}	99.46
d1pw4a_		447	Glycerol-3-phosphate transporter {Escherichia coli	98.29
d1pv7a_		417	Lactose permease {Escherichia coli [TaxId: 562]}	96.89

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.3e-18  Score=179.86  Aligned_cols=412  Identities=13%  Similarity=0.031  Sum_probs=242.0

Q ss_pred             hHHHHHHHHHHHHhcC-CccccccccHHHHHHhCCChhhhhHHHHhhhcccch-hhhhhhhhhhhhHHHHHHHHHHHHHH
Q 046386           38 KWMILVATIWIQAFTG-TNFDFSAYSSDLKSVLGVSQVQLNYLATASDLGKLF-GWLSGLALMYFPLWVVLFMAAFMGFF  115 (609)
Q Consensus        38 Rw~~lvas~~v~l~~G-t~Y~fs~YS~~lk~~L~~sq~qln~I~~a~~lG~~~-G~~sGll~~~~P~~~vllig~~~~~~  115 (609)
                      ||..++.......+.. ....++...|.++| +|+|.+|+..+..+..+|..+ .++.|.+.|...+..++.+|.++..+
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~  101 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  101 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            7888776655444433 33567888888875 899999999999999998744 57889999999887777777766666


Q ss_pred             HHHHHHHHHhhcCcchhHHHHHHHHHhhcchhhhhhHHHHHHHHhcC-CCCcchhhhhhhhhhhhHHHHHHHHhhhCCCC
Q 046386          116 GYGLQWLVISHVISLPYILVFFLCLLSGLSITWFNTVCFVLCIQNFP-ANRALALSLTVSFNGVSAAIYALAGNAINPSS  194 (609)
Q Consensus       116 GY~~~~l~~~~~~~~~~~~l~~~~~l~G~g~~~~~taalvT~~kNFP-~~RG~avgl~k~~~GLSaaI~s~i~~~~f~~d  194 (609)
                      +..+.-.+.....  .++.++..-++.|.+.+..+.++.....++|| ++||.+.|+.-...++++.+...+.....   
T Consensus       102 ~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~---  176 (447)
T d1pw4a_         102 VMLFMGFVPWATS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM---  176 (447)
T ss_dssp             HHHHHHHCHHHHS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH---
T ss_pred             HHhhccccchhhh--hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh---
Confidence            6654433222111  23555666677788777778888888999998 56999999998888888776554432110   


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhhccCcchhhHHHHHHHHH
Q 046386          195 HALYLLLNALIPLITSLAALIPILRQPSLDPLPPEGVKRDSFIFLILNIIAILTGVYLLLFGAHSSDLTVSRLLFGGALF  274 (609)
Q Consensus       195 ~~~fLllla~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~i~v~l~~yl~v~~~~~~~~~~~~~~~~g~~~  274 (609)
                                        . .     .          .+....|.....+.+++++                       +
T Consensus       177 ------------------~-~-----~----------~~w~~~~~~~~~~~~~~~~-----------------------~  199 (447)
T d1pw4a_         177 ------------------A-W-----F----------NDWHAALYMPAFCAILVAL-----------------------F  199 (447)
T ss_dssp             ------------------H-H-----T----------CCSTTCTHHHHHHHHHHHH-----------------------H
T ss_pred             ------------------h-h-----h----------hcccccchhhhhhHHHHHH-----------------------H
Confidence                              0 0     0          0011112111111111110                       0


Q ss_pred             HHHhhcccccccccccccccccccccccCCCCccccCCCchhHHHHHhhHhhhhccCCCCCCCCCccccccccccccccc
Q 046386          275 LLMFPLCIPGIVYARDWFKRTIHSSFRLDGSGFLLIDVDDLELHKELLMREAEASNNGKELDQPLLSTDDISMTYSLTRT  354 (609)
Q Consensus       275 ll~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (609)
                      ....+-..|             +      +..   .++.++++.+.    +        ++.               . +
T Consensus       200 ~~~~~~~~~-------------~------~~~---~~~~~~~~~~~----~--------~~~---------------~-~  229 (447)
T d1pw4a_         200 AFAMMRDTP-------------Q------SCG---LPPIEEYKNDY----P--------DDY---------------N-E  229 (447)
T ss_dssp             HHHHCCCSS-------------T------TTC---CCSCTTTCCC-----------------------------------
T ss_pred             HHHhcccch-------------h------hcc---cchhhhhhhhc----c--------cch---------------h-h
Confidence            011100000             0      000   00000000000    0        000               0 0


Q ss_pred             ccccCCCcccccccccchhhcccCchHHHHhhhHHHHHHHHHHHhhccccceeecchhHHHHH-hcCCc-ccchhhHHHH
Q 046386          355 KSFEKGGCCETIIGKDQLAMLGEEHSARLLVLRLDFWLYYIAYFCGGAIGLVYSNNLGQIAQS-LGESS-RTTTLLTLYS  432 (609)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Fwll~~~~~~g~g~Glm~I~n~g~I~~a-l~~~~-~~~~~VSl~S  432 (609)
                      + .++         +    ....+...++.++++.+|.+.+..++.......+.+......+. .+.+. ......++..
T Consensus       230 ~-~~~---------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (447)
T d1pw4a_         230 K-AEQ---------E----LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE  295 (447)
T ss_dssp             --------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHH
T ss_pred             c-ccc---------c----cchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcch
Confidence            0 000         0    00112234667899999988777766433222222222222222 22222 2456788888


Q ss_pred             Hhhhhhhhhcc-chhhhhhhcccchhHHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHhhhcchhhhHHHHHHHhh
Q 046386          433 SFSFFGRLLSA-APDYMRAKVYFARTGWLTIALLPTPVAFCLLAT--SGNAVALQAGTSLIGLSSGFIFAAAVSITSELF  509 (609)
Q Consensus       433 i~n~~GRl~~g-~SD~l~~~~~~~R~~~l~~~~~~~~~~~ll~~~--~~~~~~l~~~s~liG~~yG~~f~~~P~i~se~F  509 (609)
                      +.+.+|+++.| ++|++.++.   |.....+...+..++.++...  ..+.....+..+++|++.++...+..+.+.|.+
T Consensus       296 ~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  372 (447)
T d1pw4a_         296 YAGIPGTLLCGWMSDKVFRGN---RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA  372 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTSTTC---HHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS
T ss_pred             hhhhhhhhhhhhhhhhccccc---cccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            89999999998 577664432   221222222222222222221  223344566678889999999999999999999


Q ss_pred             CCCCchhhhhHHHhhhhh-HHHHHHHHHHHHhhccCCCCCCcCcccCCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 046386          510 GPNSVGVNHNILITNIPI-GSLVYGFLAAIVYDSNVSSGIGIGNVVSDSVVCMGRHCYFLTFVLWGCVSVVGLAASVLLF  588 (609)
Q Consensus       510 G~k~fg~nyg~~~~a~~~-gs~~~~~i~g~iyD~~~~~~~~~~~~~~~~~~C~G~~Cy~~tF~i~a~~~~~~~~~sl~l~  588 (609)
                      ..+..|+..|++.+...+ |..+++.+.|.+.|..+                     ++..|.+.++.++++.++..++.
T Consensus       373 p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g---------------------~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         373 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG---------------------WDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC---------------------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998655445 55667889999999864                     88899999988888888888877


Q ss_pred             HHHhhhHHHHHh
Q 046386          589 LRTRHAYDCFER  600 (609)
Q Consensus       589 ~r~r~~y~~~~~  600 (609)
                      .+++|+.+++.+
T Consensus       432 ~~~~~r~~~~~~  443 (447)
T d1pw4a_         432 IGEKRRHEQLLQ  443 (447)
T ss_dssp             HHHHHHHHGGGG
T ss_pred             HhccccHHHHHH
Confidence            776665555543

PyMOL of d1pw4a_

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure