Citrus Sinensis ID: 046405
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | 2.2.26 [Sep-21-2011] | |||||||
| B6ETT4 | 537 | Synaptotagmin-2 OS=Arabid | yes | no | 0.996 | 0.998 | 0.745 | 0.0 | |
| Q9SKR2 | 541 | Synaptotagmin-1 OS=Arabid | no | no | 1.0 | 0.994 | 0.698 | 0.0 | |
| Q7XA06 | 540 | Synaptotagmin-3 OS=Arabid | no | no | 0.998 | 0.994 | 0.543 | 1e-164 | |
| Q8L706 | 560 | Synaptotagmin-5 OS=Arabid | no | no | 0.962 | 0.925 | 0.300 | 5e-63 | |
| A0JJX5 | 569 | Synaptotagmin-4 OS=Arabid | no | no | 0.949 | 0.898 | 0.280 | 2e-54 | |
| Q3TZZ7 | 845 | Extended synaptotagmin-2 | yes | no | 0.925 | 0.589 | 0.25 | 2e-33 | |
| Q5RAG2 | 1104 | Extended synaptotagmin-1 | yes | no | 0.912 | 0.444 | 0.253 | 2e-30 | |
| Q3U7R1 | 1092 | Extended synaptotagmin-1 | no | no | 0.912 | 0.449 | 0.253 | 4e-30 | |
| Q9Z1X1 | 1088 | Extended synaptotagmin-1 | no | no | 0.912 | 0.451 | 0.253 | 9e-30 | |
| A0FGR8 | 921 | Extended synaptotagmin-2 | yes | no | 0.836 | 0.488 | 0.241 | 9e-30 |
| >sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana GN=SYT2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/538 (74%), Positives = 473/538 (87%), Gaps = 2/538 (0%)
Query: 1 MGVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIP 60
MG+ TILG GFGFGT IG+V GY+LFIY Q TD++DPEI+PL E DS+T+ + PEIP
Sbjct: 1 MGIISTILGVIGFGFGTTIGIVIGYYLFIYFQSTDVEDPEIKPLVELDSETIATMFPEIP 60
Query: 61 LWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTL 120
+WVKNPD+DR+DWLNK I MWP++DKAICK + KPIIAEQIP YKIDSVEFE LTL
Sbjct: 61 MWVKNPDFDRIDWLNKLIGHMWPYMDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTL 120
Query: 121 GSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRI 180
GSLPP+FQGMKVY TDDKE+IME +KWAGNPNI++ AKAFGLKATVQV+DLQV+A PRI
Sbjct: 121 GSLPPSFQGMKVYATDDKEIIMELSVKWAGNPNIIVVAKAFGLKATVQVIDLQVYATPRI 180
Query: 181 TLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLW 240
TLKPLVP+FPCFANI+VSLM+KP VDFG+KL GAD MAIPGLY +VQ +IKDQVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMDKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLW 240
Query: 241 PKALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTT 300
PK L VQIMDP+KAM+KPVG+L+VKV++A+KLKKKDL+G SDPYVKL L+ DK+P KKT
Sbjct: 241 PKTLNVQIMDPSKAMKKPVGLLSVKVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGKKTV 300
Query: 301 VKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360
VKH NLNPEWNEEF LVVK+PE Q L+L VYDWE+VG HDK+GMNVI LKD+TPEEP+ M
Sbjct: 301 VKHSNLNPEWNEEFDLVVKEPESQELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEPKLM 360
Query: 361 TLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLL 420
TL+LLK+M+P + +EKSRGQ+VVEV YKPFK D+IP ++D PN+V+KAPEGTP GGLL
Sbjct: 361 TLELLKSMEPKEPVSEKSRGQLVVEVEYKPFKDDDIPENIDDPNAVEKAPEGTPSTGGLL 420
Query: 421 VVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLH 480
VVI+HEA+D+EGKYHTNPS R+LFRGEE+KTKR+KKNR+PRW+E+FQF L+EPP +DKLH
Sbjct: 421 VVIVHEAEDLEGKYHTNPSVRLLFRGEERKTKRVKKNREPRWDEDFQFPLDEPPINDKLH 480
Query: 481 VEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRAS 538
VEVIS+SSR L+HPKETLGY+ INL DVV+N+RIN+KYHLIDSKNGRIQIELQWR S
Sbjct: 481 VEVISSSSR--LIHPKETLGYVVINLGDVVSNRRINDKYHLIDSKNGRIQIELQWRNS 536
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May play an important role in regulating an unconventional protein trafficking from the cytosol to the extracelluar matrix. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana GN=SYT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/540 (69%), Positives = 454/540 (84%), Gaps = 2/540 (0%)
Query: 1 MGVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIP 60
MG F TILGF GFG G +GLV GY LF+Y P D+KDPEI+ +A+QD K + +LPEIP
Sbjct: 1 MGFFSTILGFCGFGVGISLGLVIGYVLFVYLLPNDVKDPEIRSIADQDPKAMLRMLPEIP 60
Query: 61 LWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTL 120
LWVKNPD+DRVDW+N+F+E MWP+LDKAICKT + KPII EQIP+YKIDSVEFE LTL
Sbjct: 61 LWVKNPDFDRVDWINRFLEYMWPYLDKAICKTAKNIAKPIIEEQIPKYKIDSVEFETLTL 120
Query: 121 GSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRI 180
GSLPPTFQGMKVY+TD+KELIMEP LKWA NPNIL+A KAFGLKATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYLTDEKELIMEPCLKWAANPNILVAIKAFGLKATVQVVDLQVFAQPRI 180
Query: 181 TLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLW 240
TLKPLVP+FPCFANIYVSLMEKPHVDFG+KL GAD M+IPGLY +VQ IKDQVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANMYLW 240
Query: 241 PKALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTT 300
PK L V I+DPAKA ++PVGI++VKV+RA+ L+KKDL+G +DP+VK+KL++DK+PSKKTT
Sbjct: 241 PKTLVVPILDPAKAFRRPVGIVHVKVVRAVGLRKKDLMGGADPFVKIKLSEDKIPSKKTT 300
Query: 301 VKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360
VKH+NLNPEWNEEF V+DP+ Q LE VYDWE+VG+ +KMGMNV+ LK++ P+E +
Sbjct: 301 VKHKNLNPEWNEEFKFSVRDPQTQVLEFSVYDWEQVGNPEKMGMNVLALKEMVPDEHKAF 360
Query: 361 TLDLLKNMDPNDTRN--EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGG 418
TL+L K +D + +K RG++ VE+LYKPF +E+P + +VQKAPEGTP GG
Sbjct: 361 TLELRKTLDGGEDGQPPDKYRGKLEVELLYKPFTEEEMPKGFEETQAVQKAPEGTPAAGG 420
Query: 419 LLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDK 478
+LVVI+H A+DVEGK+HTNP RI F+GEE+KTK +KKNRDPRW EEF F LEEPP +K
Sbjct: 421 MLVVIVHSAEDVEGKHHTNPYVRIYFKGEERKTKHVKKNRDPRWNEEFTFMLEEPPVREK 480
Query: 479 LHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRAS 538
LHVEV+STSSR+GLLHPKETLGY+ I + DVVNNKR+N+K+HLIDSKNG+IQIEL+WR +
Sbjct: 481 LHVEVLSTSSRIGLLHPKETLGYVDIPVVDVVNNKRMNQKFHLIDSKNGKIQIELEWRTA 540
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Plays an important role in maintaining plasma membrane integrity during freezing and osmotic stresses. May function in membrane resealing during calcium-dependent freezing tolerance. May regulate endocytosis and endosome recycling at the plasma membrane and cell-to-cell trafficking of cabbage leaf curl virus (CaLCuV) and tobacco mosaic virus (TMV) movement proteins via plasmodesmata. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 579 bits (1492), Expect = e-164, Method: Compositional matrix adjust.
Identities = 294/541 (54%), Positives = 389/541 (71%), Gaps = 4/541 (0%)
Query: 1 MGVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIP 60
MG F ++LG GF G IGL+ G+F+ IY QP+ + P +PL E + LLP+IP
Sbjct: 1 MGFFTSVLGIIGFVIGIPIGLILGFFVLIYSQPSHQEYPPARPLVETSISVLLDLLPDIP 60
Query: 61 LWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTL 120
LW+KNPDY+RVDW NKFI MWP+LDKA+C +R +V+P+ A+ I + I+S+EFE L+L
Sbjct: 61 LWMKNPDYERVDWFNKFISYMWPYLDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSL 120
Query: 121 GSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRI 180
G+LPPT G+K Y T++KEL+ EP +KWAGNPNI++ K L+ VQ+VDLQ FA R+
Sbjct: 121 GTLPPTVHGVKFYETNEKELLFEPSIKWAGNPNIVLVLKVLSLRIRVQLVDLQFFAIVRV 180
Query: 181 TLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLW 240
LKPL+PTFPCF + VSLMEKPHVDFG+K+ G D M+IPGLY YVQ IK QV++MY W
Sbjct: 181 ALKPLLPTFPCFGMVVVSLMEKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHW 240
Query: 241 PKALEVQIMDPAKA-MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKT 299
P+ LE+ I+D + A ++KPVG+L+V +LRA L KKDL+G SDPYVKL LT +KLP+KKT
Sbjct: 241 PQVLEIPILDSSTASVKKPVGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKT 300
Query: 300 TVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPRE 359
T+K RNLNPEWNE F L+VKDP Q L+L+V+DW+KVG HD++GM +IPL+ I P E +E
Sbjct: 301 TIKKRNLNPEWNEHFKLIVKDPNSQVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGERKE 360
Query: 360 MTLDLLKNMD-PNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGG 418
LDL+KN + D+ ++K RG++ V++ Y PF+ + I + + G
Sbjct: 361 FNLDLIKNSNVVMDSGDKKKRGRLEVDLRYVPFREESIKRRKESREEKSSEDDDFLSQAG 420
Query: 419 LLVVILHEAQDVEG-KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDD 477
LL V + A+DVEG K H+NP A +LFRGE+KKTK +KK RDPRW EEFQFTLEEPP +
Sbjct: 421 LLSVAVQSAKDVEGKKKHSNPYAVVLFRGEKKKTKMLKKTRDPRWNEEFQFTLEEPPVKE 480
Query: 478 KLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRA 537
+ VEV+S + KE LG++ INL DVV+N RIN+KYHLI+S+NG I IE++W
Sbjct: 481 SIRVEVMSKGTGFH-FRSKEELGHVDINLDDVVDNGRINQKYHLINSRNGIIHIEIRWTT 539
Query: 538 S 538
S
Sbjct: 540 S 540
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 242 bits (618), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 169/562 (30%), Positives = 283/562 (50%), Gaps = 44/562 (7%)
Query: 11 FGFGFGTVIGLVGGY-----FLFIYHQPTDIKDPEIQPLAEQDSKTVE----LLLPEI-P 60
GF G VIGL+ G F+ + + + ++ +A TVE LL PE P
Sbjct: 1 MGFIVGVVIGLLVGIAIIIGFVKLENSRSKLRSELANTVAAFARMTVEDSRKLLPPEFYP 60
Query: 61 LWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTL 120
WV + ++ WLN + +WP++D+A + ++ +V+P++ + P + S+ F LTL
Sbjct: 61 SWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYRPAI-VASLTFSKLTL 119
Query: 121 GSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAF-GLKATVQVVDLQVFAFPR 179
G++ P F G+ V D + +E ++W GNPNI++ K G+ +QV ++ R
Sbjct: 120 GTVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVSLPIQVKNIGFTGVFR 179
Query: 180 ITLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYL 239
+ +PLV FPCF + VSL EK +DF +K+ G D AIPGL ++ I+D V +
Sbjct: 180 LIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSEAIEETIRDAVEDSIT 239
Query: 240 WPKALEVQIM--DPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSK 297
WP + I+ D + KPVG+L VK+++A L KDL+G SDP+ K+ + + +K
Sbjct: 240 WPVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTK 299
Query: 298 KTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEP 357
++ + +LNP WNE F VV+D Q L +++YD E V + +G I L ++ P +
Sbjct: 300 RSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKV 359
Query: 358 REMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDE------IPPDMDGPNSVQKAPE 411
+++ L L+K+++ R+ K+RG+V +E+LY P+ + M V K
Sbjct: 360 KDVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPYGSGNGIVNPFVTSSMTSLERVLKNDT 417
Query: 412 GTPEGG-----------GLLVVILHEA-----QDVEGKYHTNPSARILFRGEEKKTKRIK 455
E G+L V + A QD+ GK + G + KT+ +
Sbjct: 418 TDEENASSRKRKDVIVRGVLSVTVISAEEIPIQDLMGKADPYVVLSMKKSGAKSKTRVVN 477
Query: 456 KNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRI 515
+ +P W + F F +E+ D L +EV + K+ +G + L V+ +
Sbjct: 478 DSLNPVWNQTFDFVVED-GLHDMLVLEVWDHDT-----FGKDYIGRCILTLTRVIMEEEY 531
Query: 516 NEKYHLIDSKNGRIQIELQWRA 537
+ Y L +SK G++Q+ L+W A
Sbjct: 532 KDWYPLDESKTGKLQLHLKWMA 553
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May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 160/571 (28%), Positives = 284/571 (49%), Gaps = 60/571 (10%)
Query: 12 GFGFGTVIGLVGGYFLFI-YHQPTDIKDPEIQPLAE----------QDSKTVELLLPE-- 58
GF FG IG+ + L + + + + ++ LA+ QDS+ LLP
Sbjct: 2 GFLFGLFIGIAVSFGLVVAFARYSSVRSTRRADLAKTIAAFARMTVQDSRK---LLPGDF 58
Query: 59 IPLWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEAL 118
P WV +++WLN +E +WP++++A + ++ +V+P++ + P + S++F
Sbjct: 59 YPSWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQYTPAM-LASLKFSKF 117
Query: 119 TLGSLPPTFQGMKVYVTDD--KELIMEPLLKWAGNPNILIAAKAF-GLKATVQVVDLQVF 175
TLG++ P F G+ + ++ + ME ++W GNP I++ K G+ ++V ++
Sbjct: 118 TLGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLLGVSLPIEVKNIGFT 177
Query: 176 AFPRITLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVA 235
R+ KPLV FPCF + SL EK +DF +K+ G + +IPG+ ++ I+D +
Sbjct: 178 GVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPGISDAIEETIRDAIE 237
Query: 236 NMYLWPKALEVQIM--DPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK 293
+ WP + I+ D + KPVG L+VKV++A L KD+IG SDPY + +
Sbjct: 238 DSITWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLP 297
Query: 294 LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDIT 353
+KKT +LNP WNE F +V+D Q L ++V+D E VG +G +PL ++
Sbjct: 298 DRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELV 357
Query: 354 PEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDE------------------ 395
P + +++ L L+K+++ R+ K+RGQV +E+LY P G E
Sbjct: 358 PGKVKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPL-GKEGGLKNPFNPDYSLTILEK 414
Query: 396 -IPPDMDGPNSVQKAPEGTPEGG-----GLLVVILHEAQD---VEGKYHTNPSARILFRG 446
+ P+ + ++ T + G+L V + A+D V+ + I +
Sbjct: 415 VLKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVDFMGKADAFVVITLKK 474
Query: 447 EE--KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGI 504
E KT+ + + +P W + F F +E+ D L +EV + G K+ +G + +
Sbjct: 475 SETKSKTRVVPDSLNPVWNQTFDFVVED-ALHDLLTLEVWD-HDKFG----KDKIGRVIM 528
Query: 505 NLADVVNNKRINEKYHLIDSKNGRIQIELQW 535
L V+ E + L +K+G++ + L+W
Sbjct: 529 TLTRVMLEGEFQEWFELDGAKSGKLCVHLKW 559
|
May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3TZZ7|ESYT2_MOUSE Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 139/556 (25%), Positives = 262/556 (47%), Gaps = 58/556 (10%)
Query: 8 LGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQ---PLAEQDSKTVELLL--PEIPLW 62
LG+ G F V+ +G L + +K + L E + + V L + ++P W
Sbjct: 53 LGYLGLSFSWVLLALG--LLAWCRRSRGLKASRLCRALALLEDEEQAVRLGVRACDLPAW 110
Query: 63 VKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTLGS 122
V PD +R +WLNK ++ MWPF+ + I K RET++P + + + + F + +G
Sbjct: 111 VHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV--RGANAHLSTFSFTKVDVGQ 168
Query: 123 LPPTFQGMKVYV--TDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRI 180
P G+KVY D +++I++ + + GN I + K + +A V+ +Q+ R+
Sbjct: 169 QPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVK--SIQIHGTMRV 226
Query: 181 TLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLW 240
L+PL+ P + + + KP ++ + + IPGL +I D ++N +
Sbjct: 227 ILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDIPGLNGLSDTIILDIISNYLVL 285
Query: 241 PKALEVQIMDPAKAMQK----PVGILNVKVLRAMKLKKKD------LIGASDPYVKLKLT 290
P + V ++ + Q P G+L + + A L+ KD + G SDPY +++
Sbjct: 286 PNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGIIRVG 345
Query: 291 DDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLK 350
+ SK V NL+P+WNE + +V + Q LE++++D E D +G +I L
Sbjct: 346 NQIFQSK---VIKENLSPKWNEVYEALVYEHPGQELEIELFD-EDPDKDDFLGSLMIDLI 401
Query: 351 DITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPD---MDGPNSVQ 407
++ E + +D T +E +G++ +++ + D D D
Sbjct: 402 EVEKE----------RLLDEWFTLDEVPKGKLHLKLEWLTLMPDAANLDKVLADIRADKD 451
Query: 408 KAPEGTPEGGGLLVVILHEAQDVEG--KYHTNPSARI-LFRGEEKKTKRIK-KNRDPRWE 463
+A +G LL++ L A+++ K ++NP+ + + G + + +I+ K +P WE
Sbjct: 452 QASDGL--SSALLILYLDSARNLPSGKKINSNPNPLVQMSVGHKAQESKIRYKTSEPVWE 509
Query: 464 EEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVV--NNKRINEKYHL 521
E F F + P D L VEV + +LG + I L+ ++ +N IN+++ L
Sbjct: 510 ENFTFFIHNPRRQD-LEVEVKDEQHQC-------SLGSLRIPLSQLLTSDNMTINQRFQL 561
Query: 522 IDSK-NGRIQIELQWR 536
+S N +++++ R
Sbjct: 562 SNSGPNSTLKMKIALR 577
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q5RAG2|ESYT1_PONAB Extended synaptotagmin-1 OS=Pongo abelii GN=ESYT1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 144/567 (25%), Positives = 256/567 (45%), Gaps = 76/567 (13%)
Query: 2 GVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEI----QPLAEQD---SKTVEL 54
G G +GF FG +G + + D K+ + Q L +++ +KT+ +
Sbjct: 72 GAVGLSVGFVLFGLALYLG---------WRRVRDEKERSLRAARQLLDDEEQLTAKTLYM 122
Query: 55 LLPEIPLWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVE 114
E+P WV PD ++ +WLNK + +WPFL + + K + ETV P + P + +
Sbjct: 123 SHRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPH--LQTFT 180
Query: 115 FEALTLGSLPPTFQGMKVYVTDDKELIMEPL-LKWAGNPNILIAAKAFGLKATVQVVDLQ 173
F + LG P G+KV+ KE I+ L + + G+ I + K + KA V+ +Q
Sbjct: 181 FTRVELGEKPLRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVK--GMQ 238
Query: 174 VFAFPRITLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFG-ADAMAIPGLYTYVQGLIKD 232
+ R+ L+PL+ P + + + +P +D I G + + IPGL + +I D
Sbjct: 239 LHGVLRVILEPLIGDLPIVGAVSMFFIRRPTLD--INWTGMTNLLDIPGLSSLSDTMIMD 296
Query: 233 QVANMYLWPKALEVQIMDPAKAMQK-----PVGILNVKVLRAMKLKKKD------LIGAS 281
+A + P L V ++ + + + P GI+ + +L A L KD + G S
Sbjct: 297 SIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLTSKDKYVKGLIEGKS 356
Query: 282 DPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341
DPY ++L S+ V LNP+W E + ++V + Q +E++V+D + D
Sbjct: 357 DPYALVRLGTQTFCSR---VIDEELNPQWGETYEVMVHEVPGQEIEVEVFD-KDPDKDDF 412
Query: 342 MGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRN----EKSRGQVVVEVLYKPFKGD--E 395
+G M LD+ K + + + +GQV + + + D +
Sbjct: 413 LG---------------RMKLDVGKVLQAGVLDDWFPLQGGQGQVHLRLEWLSLLSDAEK 457
Query: 396 IPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDV---EGKYHTNPSARILFRGEEKKTK 452
+ + V PE P +LVV L AQD+ +G NP ++ + +++K
Sbjct: 458 LEQVLQWNQGVSSRPE--PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSIQDVTQESK 515
Query: 453 RIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN 512
+ P WEE F+F L++P + + L V+V S + TLG + + LA ++
Sbjct: 516 AVYSTNCPVWEEAFRFFLQDPQSQE-LDVQVKDDSRAL-------TLGALTLPLARLLTA 567
Query: 513 KR--INEKYHLIDSK-NGRIQIELQWR 536
+++ + L S N R+ ++L R
Sbjct: 568 PELILDQWFQLSSSGPNSRLYMKLVMR 594
|
May play a role as calcium-regulated intrinsic membrane protein. Pongo abelii (taxid: 9601) |
| >sp|Q3U7R1|ESYT1_MOUSE Extended synaptotagmin-1 OS=Mus musculus GN=Esyt1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 144/567 (25%), Positives = 252/567 (44%), Gaps = 76/567 (13%)
Query: 2 GVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEI----QPLAEQDSKTVELLL- 56
G G +GF FG +G + + D K+ + Q L +++ T E L
Sbjct: 62 GAAGLSVGFVLFGLALYLG---------WRRVRDGKERSLRAARQLLDDEERITAETLYM 112
Query: 57 --PEIPLWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVE 114
E+P WV PD ++ +WLNK + +WPFL + + K + ETV P + P + +
Sbjct: 113 SHRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGANPH--LQTFT 170
Query: 115 FEALTLGSLPPTFQGMKVYVTDDKELIMEPL-LKWAGNPNILIAAKAFGLKATVQVVDLQ 173
F + LG P G+KV+ + K+ I+ L + + G+ I + K + KA V+ +Q
Sbjct: 171 FTRVELGEKPLRIIGVKVHPSQRKDQILLDLNVSYVGDVQIDVEVKKYFCKAGVK--GMQ 228
Query: 174 VFAFPRITLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFG-ADAMAIPGLYTYVQGLIKD 232
+ R+ L+PL P + + +++P +D I G + + IPGL + +I D
Sbjct: 229 LHGVLRVILEPLTGDLPIVGAVSMFFIKRPTLD--INWTGMTNLLDIPGLSSLSDTMIMD 286
Query: 233 QVANMYLWPKALEVQIMDPAKAMQK-----PVGILNVKVLRAMKLKKKD------LIGAS 281
+A + P L V ++ + + + P GI+ + +L A L KD + G S
Sbjct: 287 SIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKS 346
Query: 282 DPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341
DPY +++ S+ V LNP W E + ++V + Q +E++V+D + D
Sbjct: 347 DPYALVRVGTQTFCSR---VIDEELNPHWGETYEVIVHEVPGQEIEVEVFD-KDPDKDDF 402
Query: 342 MGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRN----EKSRGQVVVEVLYKPFKGDEIP 397
+G M LD+ K + N + +GQV + + + D
Sbjct: 403 LG---------------RMKLDVGKVLQAGVLDNWYPLQGGQGQVHLRLEWLSLLPDAEK 447
Query: 398 PD--MDGPNSVQKAPEGTPEGGGLLVVILHEAQDV---EGKYHTNPSARILFRGEEKKTK 452
D + + PE P +LVV L AQD+ +G NP ++ + +++K
Sbjct: 448 LDQVLQWNRGITSRPE--PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSVQDVTRESK 505
Query: 453 RIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN 512
P WEE F+F L++P + + L V+V S + TLG + + LA ++
Sbjct: 506 ATYSTNSPVWEEAFRFFLQDPRSQE-LDVQVKDDSRAL-------TLGALTLPLARLLTA 557
Query: 513 KR--INEKYHLIDSK-NGRIQIELQWR 536
+++ + L S N R+ ++L R
Sbjct: 558 SELTLDQWFQLSSSGPNSRLYMKLVMR 584
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q9Z1X1|ESYT1_RAT Extended synaptotagmin-1 OS=Rattus norvegicus GN=Esyt1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 144/567 (25%), Positives = 253/567 (44%), Gaps = 76/567 (13%)
Query: 2 GVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEI----QPLAEQDSKTVELLL- 56
G G +GF FG +G + + D K+ + Q L +++ T E L
Sbjct: 64 GAAGLSVGFVLFGLALYLG---------WRRVRDGKERSLRAARQLLDDEERITAETLYM 114
Query: 57 --PEIPLWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVE 114
E+P WV PD ++ +WLNK + +WPFL + + K + ETV P + P + +
Sbjct: 115 SHRELPAWVSFPDVEKAEWLNKIVVQVWPFLGQYMEKLLAETVAPAVRGANPH--LQTFT 172
Query: 115 FEALTLGSLPPTFQGMKVYVTDDKELIMEPL-LKWAGNPNILIAAKAFGLKATVQVVDLQ 173
F + LG P G+KV+ + K+ I+ L + + G+ I + K + KA V+ +Q
Sbjct: 173 FTRVELGEKPVRIIGVKVHPSQRKDQILLDLNVSYVGDLQIDVEVKKYFCKAGVK--GMQ 230
Query: 174 VFAFPRITLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFG-ADAMAIPGLYTYVQGLIKD 232
+ R+ L+PL+ P + + +++P +D I G + + IPGL + +I D
Sbjct: 231 LHGVLRVILEPLIGDLPIVGAVSMFFIKRPTLD--INWTGMTNLLDIPGLSSLSDTMIMD 288
Query: 233 QVANMYLWPKALEVQIMDPAKAMQK-----PVGILNVKVLRAMKLKKKD------LIGAS 281
+A + P L V ++ + + + P GI+ + +L A L KD + G S
Sbjct: 289 SIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKGLIEGKS 348
Query: 282 DPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341
DPY +++ S+ V LNP W E + ++V + Q +E++V+D + D
Sbjct: 349 DPYALVRVGTQTFCSR---VIDEELNPHWGETYEVIVHEVPGQEIEVEVFD-KDPDKDDF 404
Query: 342 MGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRN----EKSRGQVVVEVLYKPFKGDEIP 397
+G M LD+ K + N + +GQV + + + D
Sbjct: 405 LG---------------RMKLDVGKVLQAGVLDNWYPLQGGQGQVHLRLEWLSLLPDAEK 449
Query: 398 PD--MDGPNSVQKAPEGTPEGGGLLVVILHEAQDV---EGKYHTNPSARILFRGEEKKTK 452
D + + PE P +LVV L AQD+ +G NP ++ + +++K
Sbjct: 450 LDQVLQWNRGITSRPE--PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSVQDVTQESK 507
Query: 453 RIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN 512
P WEE F+F L++P + + L V+V S + TLG + + LA ++
Sbjct: 508 ATYSTNCPVWEEAFRFFLQDPRSQE-LDVQVKDDSRAL-------TLGALTLPLARLLTA 559
Query: 513 KR--INEKYHLIDSK-NGRIQIELQWR 536
+++ + L S N R+ ++L R
Sbjct: 560 SELTLDQWFQLSSSGPNSRLYMKLVMR 586
|
May play a role as calcium-regulated intrinsic membrane protein. Rattus norvegicus (taxid: 10116) |
| >sp|A0FGR8|ESYT2_HUMAN Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 121/501 (24%), Positives = 240/501 (47%), Gaps = 51/501 (10%)
Query: 58 EIPLWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEA 117
++P WV PD +R +WLNK ++ MWPF+ + I K RET++P + + + + F
Sbjct: 182 DLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV--RGANTHLSTFSFTK 239
Query: 118 LTLGSLPPTFQGMKVYV--TDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVF 175
+ +G P G+KVY D +++I++ + + GN I + K + +A V+ + Q+
Sbjct: 240 VDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVKSI--QIH 297
Query: 176 AFPRITLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVA 235
R+ L+PL+ P + + + KP ++ + + +PGL +I D ++
Sbjct: 298 GTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGL-TNLLDVPGLNGLSDTIILDIIS 356
Query: 236 NMYLWPKALEVQIMDPAKAMQ----KPVGILNVKVLRAMKLKKKD------LIGASDPYV 285
N + P + V ++ + Q P G+L + + A L+ KD + G SDPY
Sbjct: 357 NYLVLPNRITVPLVSEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYG 416
Query: 286 KLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMN 345
+++ + S+ V NL+P+WNE + +V + Q LE++++D E D +G
Sbjct: 417 IIRVGNQIFQSR---VIKENLSPKWNEVYEALVYEHPGQELEIELFD-EDPDKDDFLGSL 472
Query: 346 VIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNS 405
+I L ++ E + +D T +E +G++ + + + + ++D +
Sbjct: 473 MIDLIEVEKE----------RLLDEWFTLDEVPKGKLHLRLEWLTLMPNA--SNLDKVLT 520
Query: 406 VQKAPEGTPEGG---GLLVVILHEAQDVEG--KYHTNPSARILFR-GEEKKTKRIK-KNR 458
KA + G LL++ L A+++ K +NP+ + G + + +I+ K
Sbjct: 521 DIKADKDQANDGLSSALLILYLDSARNLPSGKKISSNPNPVVQMSVGHKAQESKIRYKTN 580
Query: 459 DPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNK--RIN 516
+P WEE F F + P D L VEV + +LG + + L+ ++ ++ ++
Sbjct: 581 EPVWEENFTFFIHNPKRQD-LEVEVRDEQHQC-------SLGNLKVPLSQLLTSEDMTVS 632
Query: 517 EKYHLIDSK-NGRIQIELQWR 536
+++ L +S N I++++ R
Sbjct: 633 QRFQLSNSGPNSTIKMKIALR 653
|
May play a role as calcium-regulated intrinsic membrane protein. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | ||||||
| 225457921 | 539 | PREDICTED: extended synaptotagmin-2 isof | 1.0 | 0.998 | 0.802 | 0.0 | |
| 449469877 | 539 | PREDICTED: synaptotagmin-2-like [Cucumis | 1.0 | 0.998 | 0.782 | 0.0 | |
| 224061983 | 538 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.791 | 0.0 | |
| 359492268 | 538 | PREDICTED: extended synaptotagmin-2 isof | 0.998 | 0.998 | 0.789 | 0.0 | |
| 147816784 | 539 | hypothetical protein VITISV_031706 [Viti | 1.0 | 0.998 | 0.797 | 0.0 | |
| 356564373 | 538 | PREDICTED: extended synaptotagmin-2-like | 0.998 | 0.998 | 0.776 | 0.0 | |
| 356553367 | 538 | PREDICTED: extended synaptotagmin-1-like | 0.998 | 0.998 | 0.774 | 0.0 | |
| 255538988 | 544 | calcium lipid binding protein, putative | 0.972 | 0.961 | 0.789 | 0.0 | |
| 356544874 | 539 | PREDICTED: extended synaptotagmin-2-B-li | 0.998 | 0.996 | 0.769 | 0.0 | |
| 356538638 | 539 | PREDICTED: extended synaptotagmin-3-like | 0.996 | 0.994 | 0.770 | 0.0 |
| >gi|225457921|ref|XP_002272757.1| PREDICTED: extended synaptotagmin-2 isoform 1 [Vitis vinifera] gi|302142694|emb|CBI19897.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/538 (80%), Positives = 489/538 (90%)
Query: 1 MGVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIP 60
MG+ TILGF GFG G IGL GY+LFIY QPTD+KDP ++PL EQDSKT++ LLPEIP
Sbjct: 1 MGIVSTILGFCGFGVGISIGLFIGYYLFIYFQPTDVKDPIVRPLVEQDSKTLQRLLPEIP 60
Query: 61 LWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTL 120
WVKNPDYDRVDWLNKFIE MWP+LDKAICKT + KPIIAEQIP+YKIDSVEFEALTL
Sbjct: 61 QWVKNPDYDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTL 120
Query: 121 GSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRI 180
GSLPPTFQGMKVY TD+KELIME +KWAGNPNI +A KAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLW 240
TLKPLVP+FPCFANI+VSLMEKPHVDFG+KL GAD MAIPGLY VQ LIKDQVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLW 240
Query: 241 PKALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTT 300
PK LEV IMDPAKAM+KPVGIL+VKV+RAMKLKKKD++GASDPYVK+KL++DKLPSKKTT
Sbjct: 241 PKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDIMGASDPYVKMKLSEDKLPSKKTT 300
Query: 301 VKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360
VKH+NLNPEWNEEF +VVKDPE QALE+ VYDWE+VG HDKMGMNVIPLK++TP+EP+ +
Sbjct: 301 VKHKNLNPEWNEEFNMVVKDPESQALEVIVYDWEQVGKHDKMGMNVIPLKELTPDEPKVL 360
Query: 361 TLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLL 420
TLDLLKNMDPND +NEKSRGQ+V+E LYKPFK EIP D++ PN+++KAPEGTP GGGLL
Sbjct: 361 TLDLLKNMDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPEGTPAGGGLL 420
Query: 421 VVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLH 480
V+I+HEAQ+VEGK+HTNP R+LFRGEE+KTK +KKNRDPRWEEEFQF LEEPPT+D++H
Sbjct: 421 VIIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYVKKNRDPRWEEEFQFMLEEPPTNDRIH 480
Query: 481 VEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRAS 538
VEV+STSSRMGLLHPKETLGY+ INL+DVV+NKRINEKYHLIDSKNG+IQIELQWR S
Sbjct: 481 VEVVSTSSRMGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTS 538
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469877|ref|XP_004152645.1| PREDICTED: synaptotagmin-2-like [Cucumis sativus] gi|449503958|ref|XP_004162238.1| PREDICTED: synaptotagmin-2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/538 (78%), Positives = 483/538 (89%)
Query: 1 MGVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIP 60
MG+ +ILGFFGFG GT IGLV GY++FIY QP+D+KDP ++PL EQDS ++ ++PEIP
Sbjct: 1 MGLLSSILGFFGFGLGTSIGLVAGYYMFIYFQPSDVKDPVVRPLVEQDSASLLRMMPEIP 60
Query: 61 LWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTL 120
LWVKNPDYDRVDWLNKF+E MWP+LDKAICKTVR KPIIAEQIP+YKID+VEF+ LTL
Sbjct: 61 LWVKNPDYDRVDWLNKFLEIMWPYLDKAICKTVRNIAKPIIAEQIPKYKIDAVEFDTLTL 120
Query: 121 GSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRI 180
G LPPT QGMKVY+TDDKELIMEP +KWAGNPN+ ++ KAFGLKATVQVVDLQVFA PRI
Sbjct: 121 GCLPPTLQGMKVYMTDDKELIMEPCMKWAGNPNVTVSVKAFGLKATVQVVDLQVFAIPRI 180
Query: 181 TLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLW 240
TLKPLVP+FPCFA I+VSLMEKPHVDFG+KL GADAM+IPGLY +VQ LIKDQVANMYLW
Sbjct: 181 TLKPLVPSFPCFAKIFVSLMEKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLW 240
Query: 241 PKALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTT 300
PK LEVQIMDPA AM+KPVGIL+VKVLRA+KLKKKDL GASDPY+KLKLT+DKLPSKKTT
Sbjct: 241 PKTLEVQIMDPANAMKKPVGILHVKVLRALKLKKKDLFGASDPYLKLKLTEDKLPSKKTT 300
Query: 301 VKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360
VKH NLNP WNEEF VVKDPE QALE+ +YDWE+VG HDKMGMNV+PLK++TPEE +E
Sbjct: 301 VKHTNLNPVWNEEFTFVVKDPESQALEMILYDWEQVGKHDKMGMNVVPLKELTPEESKEF 360
Query: 361 TLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLL 420
TLD+LKNMDPNDT+NEKSRGQ+VVE+LYKPFK DE +D +VQKAP+GTP GGGLL
Sbjct: 361 TLDVLKNMDPNDTQNEKSRGQIVVEMLYKPFKDDEALKSVDDAEAVQKAPDGTPAGGGLL 420
Query: 421 VVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLH 480
V+++H+A+DVEGK+HTNP R+LFRGEEK+TK +KKNRDPRW+EEFQFTLEEPP +DK+H
Sbjct: 421 VIMIHQAEDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWDEEFQFTLEEPPVNDKIH 480
Query: 481 VEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRAS 538
VEV+S SSR+GLLHPKETLGY+ INLADVV+NKRIN KYHLIDSKNGRIQIELQWR S
Sbjct: 481 VEVLSASSRIGLLHPKETLGYVDINLADVVSNKRINAKYHLIDSKNGRIQIELQWRTS 538
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061983|ref|XP_002300696.1| predicted protein [Populus trichocarpa] gi|222842422|gb|EEE79969.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/538 (79%), Positives = 483/538 (89%)
Query: 1 MGVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIP 60
MG+ +ILGF GFG GT IG+V GY++FIY QPTD+KDP ++PL EQDSKT+ LLPEIP
Sbjct: 1 MGILSSILGFCGFGIGTSIGIVIGYYMFIYFQPTDVKDPVLRPLIEQDSKTLLRLLPEIP 60
Query: 61 LWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTL 120
WVKNPDYDRVDWLNK IE MWP+++ AICKT R KPIIAEQIP+YKIDSVEFE LTL
Sbjct: 61 QWVKNPDYDRVDWLNKLIENMWPYINTAICKTARNIAKPIIAEQIPKYKIDSVEFETLTL 120
Query: 121 GSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRI 180
GSLPP F GMKVYVTD+KELIMEP+LKWAGNP+I IA KAFGLKATVQVVDLQVFA PRI
Sbjct: 121 GSLPPNFPGMKVYVTDEKELIMEPVLKWAGNPDITIAVKAFGLKATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLW 240
TLKPL+P FPCFANIYVSL+EKPHVDFG+KL GADAM+IPGLY +VQ LIKDQVANMYLW
Sbjct: 181 TLKPLLPVFPCFANIYVSLLEKPHVDFGLKLLGADAMSIPGLYKFVQELIKDQVANMYLW 240
Query: 241 PKALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTT 300
PK L V IMDP+KAM++PVGIL VKVLRAMKLKKKDL+GASDPYVKLKLT+DK S KTT
Sbjct: 241 PKCLVVPIMDPSKAMKRPVGILTVKVLRAMKLKKKDLLGASDPYVKLKLTEDKHHSNKTT 300
Query: 301 VKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360
VKH+NLNPEWNEEF + VKDPE QALE+ VYDWE+VG HDKMGMNVIPLK++TP++P+ +
Sbjct: 301 VKHKNLNPEWNEEFNITVKDPESQALEVLVYDWEQVGKHDKMGMNVIPLKELTPDDPKVL 360
Query: 361 TLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLL 420
TLDLLKNMDPND +NEKSRGQ+VVE++YKPFK DEIP D+D PN+V KAPEGTP GGGL
Sbjct: 361 TLDLLKNMDPNDVQNEKSRGQIVVELVYKPFKEDEIPKDIDDPNAVAKAPEGTPAGGGLF 420
Query: 421 VVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLH 480
VVI+HEAQDVEGK+HTNP AR+LF+GEEK+TK++KK+RDPRWEEEFQF LEE PT+++LH
Sbjct: 421 VVIVHEAQDVEGKHHTNPYARLLFKGEEKRTKQVKKSRDPRWEEEFQFVLEEAPTNERLH 480
Query: 481 VEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRAS 538
VEV+S+SSRMGLLHPKE LGY+ INLADVVNNKRINEKYHLIDSKNGRIQ+ELQWR S
Sbjct: 481 VEVVSSSSRMGLLHPKENLGYVVINLADVVNNKRINEKYHLIDSKNGRIQVELQWRTS 538
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492268|ref|XP_003634391.1| PREDICTED: extended synaptotagmin-2 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/538 (78%), Positives = 483/538 (89%), Gaps = 1/538 (0%)
Query: 1 MGVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIP 60
MG+ TILGF GFG G IGL GY+LFIY QPTD+KDP ++PL EQDSKT++ LLPEIP
Sbjct: 1 MGIVSTILGFCGFGVGISIGLFIGYYLFIYFQPTDVKDPIVRPLVEQDSKTLQRLLPEIP 60
Query: 61 LWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTL 120
WVKNPDYDRVDWLNKFIE MWP+LDKAICKT + KPIIAEQIP+YKIDSVEFEALTL
Sbjct: 61 QWVKNPDYDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTL 120
Query: 121 GSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRI 180
GSLPPTFQGMKVY TD+KELIME +KWAGNPNI +A KAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLW 240
TLKPLVP+FPCFANI+VSLMEKPHVDFG+KL GAD MAIPGLY VQ LIKDQVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLW 240
Query: 241 PKALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTT 300
PK LEV IMDPAKAM+KPVGIL+VKV+RAMKLKKKD++GASDPYVK+KL++DKLPSKKTT
Sbjct: 241 PKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDIMGASDPYVKMKLSEDKLPSKKTT 300
Query: 301 VKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360
VKH+NLNPEWNEEF +VVKDPE QALE+ VYDWE+VG HDKMGMNVIPLK++TP+EP+ +
Sbjct: 301 VKHKNLNPEWNEEFNMVVKDPESQALEVIVYDWEQVGKHDKMGMNVIPLKELTPDEPKVL 360
Query: 361 TLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLL 420
TLDLLKNMDPND +NEKSRGQ+V+E LYKPFK EIP D++ PN+++KAPEGTP GGGLL
Sbjct: 361 TLDLLKNMDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPEGTPAGGGLL 420
Query: 421 VVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLH 480
V+I+HEAQ+VEGK+HTNP R+LFRGEE+KTK +KKNRDPRWEEEFQF LEEPPT+D++H
Sbjct: 421 VIIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYVKKNRDPRWEEEFQFMLEEPPTNDRIH 480
Query: 481 VEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRAS 538
VEV+STSS H +ETLGY+ INL+DVV+NKRINEKYHLIDSKNG+IQIELQWR S
Sbjct: 481 VEVVSTSSSF-FFHKQETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTS 537
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816784|emb|CAN71066.1| hypothetical protein VITISV_031706 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/538 (79%), Positives = 482/538 (89%)
Query: 1 MGVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIP 60
MG+ TILGF GFG G IGL GY+LFIY QPTD+KDP ++PL EQDSKT++ LLPEIP
Sbjct: 1 MGIVSTILGFCGFGVGISIGLFIGYYLFIYFQPTDVKDPIVRPLVEQDSKTLQRLLPEIP 60
Query: 61 LWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTL 120
WVKNPDYDRVDWLNKFIE MWP+LDKAICKT + KPIIAEQIP+YKIDSVEFEALTL
Sbjct: 61 QWVKNPDYDRVDWLNKFIENMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEALTL 120
Query: 121 GSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRI 180
GSLPPTFQGMKVY TD+KELIME +KWAGNPNI +A KAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYATDEKELIMELSMKWAGNPNITVAVKAFGLRATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLW 240
TLKPLVP+FPCFANI+VSLMEKPHVDFG+KL GAD MAIPGLY VQ LIKDQVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIFVSLMEKPHVDFGLKLLGADVMAIPGLYRLVQELIKDQVANMYLW 240
Query: 241 PKALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTT 300
PK LEV IMDPAKAM+KPVGIL+VKV+RAMKLKKKDL+GASDPYVK+KL +DKLPSKKTT
Sbjct: 241 PKTLEVPIMDPAKAMKKPVGILSVKVVRAMKLKKKDLMGASDPYVKMKLXEDKLPSKKTT 300
Query: 301 VKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360
VK +NLNPEWNEEF +VVKDPE QALE+ VYDWE+VG HDKMGMNVIPLK++TP+EP+ +
Sbjct: 301 VKXKNLNPEWNEEFNMVVKDPESQALEVXVYDWEQVGKHDKMGMNVIPLKELTPDEPKVL 360
Query: 361 TLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLL 420
TLDLLKN DPND +NEKSRGQ+V+E LYKPFK EIP D++ PN+++KAP GTP GGGLL
Sbjct: 361 TLDLLKNXDPNDVQNEKSRGQIVLEALYKPFKDTEIPKDLEDPNAIEKAPXGTPAGGGLL 420
Query: 421 VVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLH 480
V I+HEAQ+VEGK+HTNP R+LFRGEE+KTK KKNRDPRWEEEF F LEEPPT+D++H
Sbjct: 421 VXIVHEAQEVEGKHHTNPYVRLLFRGEERKTKYXKKNRDPRWEEEFXFMLEEPPTNDRIH 480
Query: 481 VEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRAS 538
VEV+STSSRMGLLHPKETLGY+ INL+DVV+NKRINEKYHLIDSKNG+IQIELQWR S
Sbjct: 481 VEVVSTSSRMGLLHPKETLGYVDINLSDVVSNKRINEKYHLIDSKNGKIQIELQWRTS 538
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564373|ref|XP_003550429.1| PREDICTED: extended synaptotagmin-2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/537 (77%), Positives = 478/537 (89%)
Query: 1 MGVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIP 60
MG+ TI FFGFG GT IGLV GY+LFIY QPTD+KDP IQPL EQD+KT++LLLPEIP
Sbjct: 1 MGILSTIASFFGFGVGTSIGLVIGYYLFIYFQPTDVKDPVIQPLVEQDAKTLQLLLPEIP 60
Query: 61 LWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTL 120
W+KNPDYDR+DWLNKFI MWP+LDKAICKT R KPIIAEQIP+YKIDSVEFE L+L
Sbjct: 61 TWIKNPDYDRLDWLNKFILYMWPYLDKAICKTARSIAKPIIAEQIPKYKIDSVEFEELSL 120
Query: 121 GSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRI 180
GSLPPTFQGMKVYVTD+KELIMEP +KWAGNPNI++A KAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNIIVAIKAFGLRATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLW 240
TLKPLVP+FPCFANIY+SLMEKPHVDFG+KL GADAM+IPGLY VQ +IKDQVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYMSLMEKPHVDFGLKLLGADAMSIPGLYRIVQEIIKDQVANMYLW 240
Query: 241 PKALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTT 300
PKALEVQIMDP KAM+ PVGIL+VKV+RA KLKKKDL+GASDPYVKLKLT++KLPSKKTT
Sbjct: 241 PKALEVQIMDPTKAMKVPVGILHVKVVRAEKLKKKDLLGASDPYVKLKLTEEKLPSKKTT 300
Query: 301 VKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360
VK++NLNPEWNEEF +VVKDPE Q LEL VYDWE++G HDKMGMNVIPLK+ITP+EP+ +
Sbjct: 301 VKYKNLNPEWNEEFNVVVKDPESQVLELTVYDWEQIGKHDKMGMNVIPLKEITPDEPKVV 360
Query: 361 TLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLL 420
TL+LLK MDPND NEK RGQ+ VEVLYKPFK DE+P + N+++KAPEGTP GGLL
Sbjct: 361 TLNLLKTMDPNDPENEKLRGQLTVEVLYKPFKEDELPQSTEDSNAIEKAPEGTPASGGLL 420
Query: 421 VVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLH 480
V+I+HEA+DVEGK+HTNP R+LF+GEE+KTK +KKNRDPRW E FQF LEEPPT+++L+
Sbjct: 421 VIIVHEAEDVEGKHHTNPYVRLLFKGEERKTKHVKKNRDPRWGESFQFMLEEPPTNERLY 480
Query: 481 VEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRA 537
VEV S SS++GLLHPKE+LGY+ I L+DVV NKRINEKYHLIDS+NGRIQIELQWR
Sbjct: 481 VEVQSASSKLGLLHPKESLGYVDIKLSDVVTNKRINEKYHLIDSRNGRIQIELQWRT 537
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553367|ref|XP_003545028.1| PREDICTED: extended synaptotagmin-1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/537 (77%), Positives = 476/537 (88%)
Query: 1 MGVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIP 60
MG+ TI FFGFG GT IGLV GY+LFIY Q TD+KDP IQPL EQD+KT++LLLPEIP
Sbjct: 1 MGILSTIASFFGFGMGTSIGLVIGYYLFIYFQSTDVKDPVIQPLIEQDAKTLQLLLPEIP 60
Query: 61 LWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTL 120
W+KNPDYDR+DWLNKFIE MWP+LDKAICKT + KPIIAEQIP+YKIDSVEFE L L
Sbjct: 61 TWIKNPDYDRLDWLNKFIEYMWPYLDKAICKTAKSIAKPIIAEQIPKYKIDSVEFEELNL 120
Query: 121 GSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRI 180
GSLPPTFQGMKVYVTD+KELIMEP +KWAGNPNI++A KAFGL+ATVQVVDLQVFA PRI
Sbjct: 121 GSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNIIVAVKAFGLRATVQVVDLQVFAAPRI 180
Query: 181 TLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLW 240
TLKPLVP+FPCFANIYVSLMEKPHVDFG+KL GADAM+IPGLY VQ +IKDQVA MYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLLGADAMSIPGLYRIVQEIIKDQVAKMYLW 240
Query: 241 PKALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTT 300
PKALEVQIMDP KAM+ PVGIL+VKV+RA KLKKKDL+GASDPYVKLKLT++KLPSKKTT
Sbjct: 241 PKALEVQIMDPTKAMKVPVGILHVKVVRAEKLKKKDLLGASDPYVKLKLTEEKLPSKKTT 300
Query: 301 VKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360
VK++NLNPEWNEEF +VVKDPE Q LEL VYDWE++G HDKMGMNVIPLK+ITP+EP+ +
Sbjct: 301 VKYKNLNPEWNEEFNIVVKDPESQVLELTVYDWEQIGKHDKMGMNVIPLKEITPDEPKAV 360
Query: 361 TLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLL 420
TL+LLK MDPND N KSRGQ+ VEVLYKPFK DE+P + N+++KAPEGTP GGLL
Sbjct: 361 TLNLLKTMDPNDPENAKSRGQLTVEVLYKPFKEDELPQSAEDSNAIEKAPEGTPASGGLL 420
Query: 421 VVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLH 480
V+I+HEA+DVEGK+HTNP R+LF+GEE+KTK +KKNRDPRW E FQF LEEPPT+++L+
Sbjct: 421 VIIVHEAEDVEGKHHTNPYVRLLFKGEERKTKHVKKNRDPRWGESFQFMLEEPPTNERLY 480
Query: 481 VEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRA 537
VEV S SS++GLLHPKE+LGY+ I L+DVV NKRINEKYHLIDS+NGRIQIELQWR
Sbjct: 481 VEVQSASSKLGLLHPKESLGYVDIKLSDVVTNKRINEKYHLIDSRNGRIQIELQWRT 537
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538988|ref|XP_002510559.1| calcium lipid binding protein, putative [Ricinus communis] gi|223551260|gb|EEF52746.1| calcium lipid binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/523 (78%), Positives = 478/523 (91%)
Query: 16 GTVIGLVGGYFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIPLWVKNPDYDRVDWLN 75
GT IG+ GY++FIY QPTD+KDP I+PL EQDSKT++ +LPE+PLWVKNPDYDRVDWLN
Sbjct: 21 GTSIGITIGYYMFIYFQPTDVKDPVIRPLVEQDSKTLQRMLPELPLWVKNPDYDRVDWLN 80
Query: 76 KFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTLGSLPPTFQGMKVYVT 135
+FI TMWP+LD AICKTV+ KPIIAEQIP+YKIDSVEF+ LTLGSLPPTFQG+KVY+T
Sbjct: 81 RFIATMWPYLDTAICKTVKTIAKPIIAEQIPKYKIDSVEFQELTLGSLPPTFQGIKVYIT 140
Query: 136 DDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRITLKPLVPTFPCFANI 195
D+KELI+EP LKWAGNPNI+IAAKAFGL+ATVQVVDLQVFA PRITLKPLVPTFPCFA+I
Sbjct: 141 DEKELIIEPSLKWAGNPNIIIAAKAFGLRATVQVVDLQVFAAPRITLKPLVPTFPCFASI 200
Query: 196 YVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLWPKALEVQIMDPAKAM 255
+VSLMEKPHVDFG+KL GAD M+IPGLY +VQ LIKDQVANMYLWPKAL+V I+DPAKA
Sbjct: 201 FVSLMEKPHVDFGLKLLGADVMSIPGLYRFVQELIKDQVANMYLWPKALQVPILDPAKAA 260
Query: 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFG 315
++PVGIL+VKV+RAMKLKKKD +GASDPYVKLKLT+DKLPSKKT +KH+NLNPEWNEEF
Sbjct: 261 KRPVGILSVKVVRAMKLKKKDFLGASDPYVKLKLTEDKLPSKKTAIKHKNLNPEWNEEFN 320
Query: 316 LVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRN 375
+VVKDPE QALE+ VYDWE+VG H+KMGMNV+PLK++TP+EP+ MTLDLLKNMDPND +N
Sbjct: 321 IVVKDPESQALEVIVYDWEQVGKHEKMGMNVVPLKELTPDEPKVMTLDLLKNMDPNDAQN 380
Query: 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGKYH 435
EKSRGQ+V+E++YKPFK DE+P D+ N V KAPEGTP GGGLLVVI+HEAQD+EGK+H
Sbjct: 381 EKSRGQLVLELIYKPFKEDEMPNDVADSNDVGKAPEGTPAGGGLLVVIVHEAQDIEGKHH 440
Query: 436 TNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495
TNP R+LFRGEEK+TK +KKNRDPRWEEEFQFTLEEPPT+D+++VEV+S SSRMG+LHP
Sbjct: 441 TNPYVRLLFRGEEKRTKLVKKNRDPRWEEEFQFTLEEPPTNDRIYVEVLSASSRMGILHP 500
Query: 496 KETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRAS 538
KE LGY+ INLADVVNNKR NEKYHLIDS+NGRIQIELQWR S
Sbjct: 501 KENLGYVTINLADVVNNKRTNEKYHLIDSRNGRIQIELQWRTS 543
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544874|ref|XP_003540872.1| PREDICTED: extended synaptotagmin-2-B-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/538 (76%), Positives = 479/538 (89%), Gaps = 1/538 (0%)
Query: 1 MGVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIP 60
MG FGTILGF GFG G IGLV GYFLFIY QPT+++DPEI+PL+EQ+ +T++ + PEIP
Sbjct: 1 MGFFGTILGFLGFGVGISIGLVSGYFLFIYFQPTNVEDPEIKPLSEQEQETLQRMFPEIP 60
Query: 61 LWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTL 120
LW+KNPD+DR+DWLNKF+E MWP+LDKAICKT + KPIIAEQIP+YKIDSVEFE LTL
Sbjct: 61 LWIKNPDFDRLDWLNKFVEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTL 120
Query: 121 GSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRI 180
GSLPPTFQGMKV+VTD+KELIMEP +KWAGNPN+ ++ KAFGLKATVQVVDLQVF PRI
Sbjct: 121 GSLPPTFQGMKVFVTDEKELIMEPSVKWAGNPNVTVSVKAFGLKATVQVVDLQVFLLPRI 180
Query: 181 TLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLW 240
TLKPLVP+FPCFANIYVSLMEKPHVDFG+KL GAD M+IPG+Y VQ LIKDQVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANMYLW 240
Query: 241 PKALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTT 300
PK LEVQ++D +KA+++PVGIL+VKVL+AMKLKKKDL+GASDPYVKLKLT+DKLPSKKTT
Sbjct: 241 PKTLEVQVLDMSKALKRPVGILHVKVLQAMKLKKKDLLGASDPYVKLKLTEDKLPSKKTT 300
Query: 301 VKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360
VKH NLNPEWNEEF +VVKDP+ Q LE+ VYDWE+VG DKMGMNVIPLK+++PEEP+
Sbjct: 301 VKHNNLNPEWNEEFNIVVKDPDSQVLEINVYDWEQVGKRDKMGMNVIPLKEVSPEEPKRF 360
Query: 361 TLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLL 420
TLDLLKNMDPND +NEKSRGQ+VVE+ YKPFK +++ + +V KAPEGTP GGGLL
Sbjct: 361 TLDLLKNMDPNDAQNEKSRGQIVVELTYKPFKEEDLGKGFEETQTVPKAPEGTPAGGGLL 420
Query: 421 VVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLH 480
VVI+HEAQDVEGKYHTNP R++FRG+EKKTKRIKKNRDPRWE+EFQF ++EPPT+D+LH
Sbjct: 421 VVIVHEAQDVEGKYHTNPHVRLIFRGDEKKTKRIKKNRDPRWEDEFQFMVDEPPTNDRLH 480
Query: 481 VEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRAS 538
VEV+STSSR LLH KE+LGYI INL DVV NKRINEKYHLIDSKNGR+QIELQWR S
Sbjct: 481 VEVVSTSSR-NLLHQKESLGYIDINLGDVVANKRINEKYHLIDSKNGRLQIELQWRTS 537
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538638|ref|XP_003537808.1| PREDICTED: extended synaptotagmin-3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/537 (77%), Positives = 477/537 (88%), Gaps = 1/537 (0%)
Query: 1 MGVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIP 60
MG FGTILGF GFG G IGLV GYFLFIY QPT+++DPEI+PLAEQ+ +T++ + PEIP
Sbjct: 1 MGFFGTILGFLGFGVGISIGLVAGYFLFIYFQPTNVEDPEIKPLAEQEQETLQRMFPEIP 60
Query: 61 LWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTL 120
LW+KNPD+DR+DWLNKF+E MWP+LDKAICKT + KPIIAEQIP+YKIDSVEFE LTL
Sbjct: 61 LWIKNPDFDRLDWLNKFVEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTL 120
Query: 121 GSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRI 180
GSLPPTFQGMKVYVTD+KELIMEP +KWA NPN+ ++ KAFGLKATVQVVDLQVF PRI
Sbjct: 121 GSLPPTFQGMKVYVTDEKELIMEPSVKWAANPNVTVSVKAFGLKATVQVVDLQVFLLPRI 180
Query: 181 TLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLW 240
TLKPLVP+FPCFANIYVSLMEKPHVDFG+KL GAD M+IPG+Y VQ LIKDQVANMYLW
Sbjct: 181 TLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQELIKDQVANMYLW 240
Query: 241 PKALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTT 300
PK LEVQ++D +KA+++PVGIL+VKVL+A+KLKKKDL+GASDPYVKLKLT+DKLPSKKTT
Sbjct: 241 PKTLEVQVLDMSKALKRPVGILHVKVLQAIKLKKKDLLGASDPYVKLKLTEDKLPSKKTT 300
Query: 301 VKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360
VKH+NLNPEWNEEF +VVKDP+ Q LE+ VYDWE+VG HDKMGMNVIPLK+++PEE +
Sbjct: 301 VKHKNLNPEWNEEFNMVVKDPDSQVLEINVYDWEQVGKHDKMGMNVIPLKEVSPEETKRF 360
Query: 361 TLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLL 420
+LDLLKNMDPND +NEKSRGQ+VVE+ YKPFK +++ + +V KAPEGTP GGGLL
Sbjct: 361 SLDLLKNMDPNDVQNEKSRGQIVVELTYKPFKEEDLGKGFEETQTVPKAPEGTPAGGGLL 420
Query: 421 VVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLH 480
VVI+HEAQDVEGKYHTNP R++FRGEEKKTKRIKKNRDPRWE+EFQF +EEPPT+D+LH
Sbjct: 421 VVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKRIKKNRDPRWEDEFQFMVEEPPTNDRLH 480
Query: 481 VEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRA 537
VEV+STSSR LLH KE LGYI INL DVV NKRINEKYHLIDSKNGR+QIELQWR
Sbjct: 481 VEVVSTSSR-NLLHQKEPLGYIDINLGDVVANKRINEKYHLIDSKNGRLQIELQWRT 536
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | ||||||
| TAIR|locus:2198581 | 537 | SYTB "AT1G20080" [Arabidopsis | 0.951 | 0.953 | 0.749 | 2.1e-219 | |
| TAIR|locus:2146688 | 540 | SYTC "AT5G04220" [Arabidopsis | 0.953 | 0.95 | 0.545 | 7.2e-155 | |
| TAIR|locus:2047027 | 256 | AT2G21010 "AT2G21010" [Arabido | 0.472 | 0.992 | 0.610 | 1.1e-87 | |
| TAIR|locus:2184931 | 569 | SYTD "AT5G11100" [Arabidopsis | 0.631 | 0.597 | 0.337 | 2.3e-58 | |
| TAIR|locus:2201036 | 560 | NTMC2T2.1 "AT1G05500" [Arabido | 0.631 | 0.607 | 0.346 | 2.6e-54 | |
| TAIR|locus:2100992 | 510 | NTMC2T4 [Arabidopsis thaliana | 0.656 | 0.692 | 0.313 | 2.1e-52 | |
| MGI|MGI:1261845 | 845 | Esyt2 "extended synaptotagmin- | 0.860 | 0.547 | 0.260 | 4.5e-36 | |
| FB|FBgn0039208 | 849 | Esyt2 [Drosophila melanogaster | 0.754 | 0.478 | 0.251 | 2.6e-35 | |
| UNIPROTKB|A0FGR8 | 921 | ESYT2 "Extended synaptotagmin- | 0.869 | 0.508 | 0.251 | 1.8e-34 | |
| UNIPROTKB|Q9BSJ8 | 1104 | ESYT1 "Extended synaptotagmin- | 0.849 | 0.413 | 0.263 | 4.3e-34 |
| TAIR|locus:2198581 SYTB "AT1G20080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2119 (751.0 bits), Expect = 2.1e-219, P = 2.1e-219
Identities = 385/514 (74%), Positives = 455/514 (88%)
Query: 25 YFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIPLWVKNPDYDRVDWLNKFIETMWPF 84
Y+LFIY Q TD++DPEI+PL E DS+T+ + PEIP+WVKNPD+DR+DWLNK I MWP+
Sbjct: 25 YYLFIYFQSTDVEDPEIKPLVELDSETIATMFPEIPMWVKNPDFDRIDWLNKLIGHMWPY 84
Query: 85 LDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTLGSLPPTFQGMKVYVTDDKELIMEP 144
+DKAICK + KPIIAEQIP YKIDSVEFE LTLGSLPP+FQGMKVY TDDKE+IME
Sbjct: 85 MDKAICKMAKSIAKPIIAEQIPNYKIDSVEFEMLTLGSLPPSFQGMKVYATDDKEIIMEL 144
Query: 145 LLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRITLKPLVPTFPCFANIYVSLMEKPH 204
+KWAGNPNI++ AKAFGLKATVQV+DLQV+A PRITLKPLVP+FPCFANI+VSLM+KP
Sbjct: 145 SVKWAGNPNIIVVAKAFGLKATVQVIDLQVYATPRITLKPLVPSFPCFANIFVSLMDKPQ 204
Query: 205 VDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLWPKALEVQIMDPAKAMQKPVGILNV 264
VDFG+KL GAD MAIPGLY +VQ +IKDQVANMYLWPK L VQIMDP+KAM+KPVG+L+V
Sbjct: 205 VDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLWPKTLNVQIMDPSKAMKKPVGLLSV 264
Query: 265 KVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQ 324
KV++A+KLKKKDL+G SDPYVKL L+ DK+P KKT VKH NLNPEWNEEF LVVK+PE Q
Sbjct: 265 KVIKAIKLKKKDLLGGSDPYVKLTLSGDKVPGKKTVVKHSNLNPEWNEEFDLVVKEPESQ 324
Query: 325 ALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVV 384
L+L VYDWE+VG HDK+GMNVI LKD+TPEEP+ MTL+LLK+M+P + +EKSRGQ+VV
Sbjct: 325 ELQLIVYDWEQVGKHDKIGMNVIQLKDLTPEEPKLMTLELLKSMEPKEPVSEKSRGQLVV 384
Query: 385 EVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGKYHTNPSARILF 444
EV YKPFK D+IP ++D PN+V+KAPEGTP GGLLVVI+HEA+D+EGKYHTNPS R+LF
Sbjct: 385 EVEYKPFKDDDIPENIDDPNAVEKAPEGTPSTGGLLVVIVHEAEDLEGKYHTNPSVRLLF 444
Query: 445 RGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGI 504
RGEE+KTKR+KKNR+PRW+E+FQF L+EPP +DKLHVEVIS+SSR L+HPKETLGY+ I
Sbjct: 445 RGEERKTKRVKKNREPRWDEDFQFPLDEPPINDKLHVEVISSSSR--LIHPKETLGYVVI 502
Query: 505 NLADVVNNKRINEKYHLIDSKNGRIQIELQWRAS 538
NL DVV+N+RIN+KYHLIDSKNGRIQIELQWR S
Sbjct: 503 NLGDVVSNRRINDKYHLIDSKNGRIQIELQWRNS 536
|
|
| TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1510 (536.6 bits), Expect = 7.2e-155, P = 7.2e-155
Identities = 282/517 (54%), Positives = 374/517 (72%)
Query: 25 YFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLPEIPLWVKNPDYDRVDWLNKFIETMWPF 84
+F+ IY QP+ + P +PL E + LLP+IPLW+KNPDY+RVDW NKFI MWP+
Sbjct: 25 FFVLIYSQPSHQEYPPARPLVETSISVLLDLLPDIPLWMKNPDYERVDWFNKFISYMWPY 84
Query: 85 LDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTLGSLPPTFQGMKVYVTDDKELIMEP 144
LDKA+C +R +V+P+ A+ I + I+S+EFE L+LG+LPPT G+K Y T++KEL+ EP
Sbjct: 85 LDKAVCGIIRSSVQPLFADYIGTFCIESIEFENLSLGTLPPTVHGVKFYETNEKELLFEP 144
Query: 145 LLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPRITLKPLVPTFPCFANIYVSLMEKPH 204
+KWAGNPNI++ K L+ VQ+VDLQ FA R+ LKPL+PTFPCF + VSLMEKPH
Sbjct: 145 SIKWAGNPNIVLVLKVLSLRIRVQLVDLQFFAIVRVALKPLLPTFPCFGMVVVSLMEKPH 204
Query: 205 VDFGIKLFGADAMAIPGLYTYVQGLIKDQVANMYLWPKALEVQIMDPAKA-MQKPVGILN 263
VDFG+K+ G D M+IPGLY YVQ IK QV++MY WP+ LE+ I+D + A ++KPVG+L+
Sbjct: 205 VDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHWPQVLEIPILDSSTASVKKPVGLLH 264
Query: 264 VKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEY 323
V +LRA L KKDL+G SDPYVKL LT +KLP+KKTT+K RNLNPEWNE F L+VKDP
Sbjct: 265 VSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHFKLIVKDPNS 324
Query: 324 QALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDP-NDTRNEKSRGQV 382
Q L+L+V+DW+KVG HD++GM +IPL+ I P E +E LDL+KN + D+ ++K RG++
Sbjct: 325 QVLQLEVFDWDKVGGHDRLGMQMIPLQKINPGERKEFNLDLIKNSNVVMDSGDKKKRGRL 384
Query: 383 VVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGKY-HTNPSAR 441
V++ Y PF+ + I + + GLL V + A+DVEGK H+NP A
Sbjct: 385 EVDLRYVPFREESIKRRKESREEKSSEDDDFLSQAGLLSVAVQSAKDVEGKKKHSNPYAV 444
Query: 442 ILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGY 501
+LFRGE+KKTK +KK RDPRW EEFQFTLEEPP + + VEV+S + KE LG+
Sbjct: 445 VLFRGEKKKTKMLKKTRDPRWNEEFQFTLEEPPVKESIRVEVMSKGTGFHF-RSKEELGH 503
Query: 502 IGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRAS 538
+ INL DVV+N RIN+KYHLI+S+NG I IE++W S
Sbjct: 504 VDINLDDVVDNGRINQKYHLINSRNGIIHIEIRWTTS 540
|
|
| TAIR|locus:2047027 AT2G21010 "AT2G21010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
Identities = 160/262 (61%), Positives = 205/262 (78%)
Query: 278 IGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337
+G +PYV+++L++DK+ SKKTTVKH+NLNPEWNEEF V+DP+ Q LE VY WEK+G
Sbjct: 1 MGMINPYVQIELSEDKISSKKTTVKHKNLNPEWNEEFKFSVRDPKTQVLEFNVYGWEKIG 60
Query: 338 HHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNE-KSRGQVVVEVLYKPFKGDEI 396
HDKMGMNV+ LK++ P+E + TL+L K +D + K RG++ VE+LYKPF +E+
Sbjct: 61 KHDKMGMNVLALKELAPDERKAFTLELRKTLDGGEEGQPGKYRGKLEVELLYKPFTEEEM 120
Query: 397 PPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKK 456
+VQKAPEGTP GG+LVVI+H A+DVEGK+HTNP I F+GEE+KTK +KK
Sbjct: 121 -------QAVQKAPEGTPVAGGMLVVIVHSAEDVEGKHHTNPYVHIYFKGEERKTKNVKK 173
Query: 457 NRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRIN 516
N+DP+W EEF F LEEPP +KLHVEV STSSR+GLLHPKETLGY+ I + DVVNNKR+N
Sbjct: 174 NKDPKWNEEFSFMLEEPPVHEKLHVEVFSTSSRIGLLHPKETLGYVDIPVVDVVNNKRMN 233
Query: 517 EKYHLIDSKNGRIQIELQWRAS 538
+K+HLIDSKNG+IQIEL W+ +
Sbjct: 234 QKFHLIDSKNGKIQIELDWQTA 255
|
|
| TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 532 (192.3 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 121/358 (33%), Positives = 204/358 (56%)
Query: 47 QDSKTVELLLPE--IPLWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQ 104
QDS+ LLP P WV +++WLN +E +WP++++A + ++ +V+P++ +
Sbjct: 48 QDSRK---LLPGDFYPSWVVFSQRQKLNWLNLELEKIWPYVNEAASELIKSSVEPVLEQY 104
Query: 105 IPQYKIDSVEFEALTLGSLPPTFQGMKVYVTDD--KELIMEPLLKWAGNPNILIAAKAF- 161
P + S++F TLG++ P F G+ + ++ + ME ++W GNP I++ K
Sbjct: 105 TPAM-LASLKFSKFTLGTVAPQFTGVSILESESGPNGITMELEMQWDGNPKIVLDVKTLL 163
Query: 162 GLKATVQVVDLQVFAFPRITLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPG 221
G+ ++V ++ R+ KPLV FPCF + SL EK +DF +K+ G + +IPG
Sbjct: 164 GVSLPIEVKNIGFTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVIGGELTSIPG 223
Query: 222 LYTYVQGLIKDQVANMYLWPKALEVQIM--DPAKAMQKPVGILNVKVLRAMKLKKKDLIG 279
+ ++ I+D + + WP + I+ D + KPVG L+VKV++A L KD+IG
Sbjct: 224 ISDAIEETIRDAIEDSITWPVRKIIPILPGDYSDLELKPVGKLDVKVVQAKDLANKDMIG 283
Query: 280 ASDPY--VKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337
SDPY V ++ D+ +KKT +LNP WNE F +V+D Q L ++V+D E VG
Sbjct: 284 KSDPYAIVFIRPLPDR--TKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVG 341
Query: 338 HHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDE 395
+G +PL ++ P + +++ L L+K+++ R+ K+RGQV +E+LY P G E
Sbjct: 342 SSQLIGAAQVPLNELVPGKVKDIWLKLVKDLEIQ--RDTKNRGQVQLELLYCPL-GKE 396
|
|
| TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 121/349 (34%), Positives = 204/349 (58%)
Query: 47 QDSKTVELLLPEI-PLWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQI 105
+DS+ +LL PE P WV + ++ WLN + +WP++D+A + ++ +V+P++ +
Sbjct: 48 EDSR--KLLPPEFYPSWVVFSERQKLTWLNHHLTKIWPYVDEAASELIKASVEPVLEQYR 105
Query: 106 PQYKIDSVEFEALTLGSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAF-GLK 164
P + S+ F LTLG++ P F G+ V D + +E ++W GNPNI++ K G+
Sbjct: 106 PAI-VASLTFSKLTLGTVAPQFTGVSVIDGDKNGITLELDMQWDGNPNIVLGVKTLVGVS 164
Query: 165 ATVQVVDLQVFAFPRITLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGADAMAIPGLYT 224
+QV ++ R+ +PLV FPCF + VSL EK +DF +K+ G D AIPGL
Sbjct: 165 LPIQVKNIGFTGVFRLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVVGGDISAIPGLSE 224
Query: 225 YVQGLIKDQVANMYLWPKALEVQIM--DPAKAMQKPVGILNVKVLRAMKLKKKDLIGASD 282
++ I+D V + WP + I+ D + KPVG+L VK+++A L KDL+G SD
Sbjct: 225 AIEETIRDAVEDSITWPVRKVIPIIPGDYSDLELKPVGMLEVKLVQAKNLTNKDLVGKSD 284
Query: 283 PYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKM 342
P+ K+ + + +K++ + +LNP WNE F VV+D Q L +++YD E V + +
Sbjct: 285 PFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASELI 344
Query: 343 GMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391
G I L ++ P + +++ L L+K+++ R+ K+RG+V +E+LY P+
Sbjct: 345 GCAQIRLCELEPGKVKDVWLKLVKDLEIQ--RDTKNRGEVHLELLYIPY 391
|
|
| TAIR|locus:2100992 NTMC2T4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 114/364 (31%), Positives = 199/364 (54%)
Query: 60 PLWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALT 119
P W+ P +++V WLNK + MWP++ +A +R++V+P++ + P I S++F LT
Sbjct: 59 PQWISFPAFEQVKWLNKLLSKMWPYIAEAATMVIRDSVEPLLEDYRPP-GITSLKFSKLT 117
Query: 120 LGSLPPTFQGMKVYVTDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFAFPR 179
LG++ P +G++V + ++ M+ L+W G+PNI++ A +Q+ DLQVF R
Sbjct: 118 LGNVAPKIEGIRVQSFKEGQVTMDVDLRWGGDPNIVLGVTALVASIPIQLKDLQVFTVAR 177
Query: 180 ITLKPLVPTFPCFANIYVSLME--KPHVDFGIKLFGADAMAIPGLYTYVQGLIKDQVANM 237
+ + L PC + + V+L+ KP +D+ +K G AIPGL + + V +M
Sbjct: 178 VIFQ-LADEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGLSDMIDDTVDTIVKDM 236
Query: 238 YLWPKALEVQI----MDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK 293
WP + V I +D + KP G L V V++A LK K+LIG SDPY + +
Sbjct: 237 LQWPHRIVVPIGGIPVDLSDLELKPQGKLIVTVVKATNLKNKELIGKSDPYATIYIRP-- 294
Query: 294 LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDIT 353
+ KT NLNP W++ F L+ +D E Q+L ++V+D + VG +++G+ +PL +
Sbjct: 295 VFKYKTKAIENNLNPVWDQTFELIAEDKETQSLTVEVFD-KDVGQDERLGLVKLPLSSLE 353
Query: 354 PEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGT 413
+E+ L+LL ++D +++K RG + ++V Y F +E ++ + + +
Sbjct: 354 AGVTKELELNLLSSLDTLKVKDKKDRGSITLKVHYHEFNKEEQMAALEDEKKIMEERKRL 413
Query: 414 PEGG 417
E G
Sbjct: 414 KEAG 417
|
|
| MGI|MGI:1261845 Esyt2 "extended synaptotagmin-like protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 398 (145.2 bits), Expect = 4.5e-36, P = 4.5e-36
Identities = 135/518 (26%), Positives = 250/518 (48%)
Query: 44 LAEQDSKTVELLLP--EIPLWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPII 101
L E + + V L + ++P WV PD +R +WLNK ++ MWPF+ + I K RET++P +
Sbjct: 90 LLEDEEQAVRLGVRACDLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV 149
Query: 102 AEQIPQYKIDSVEFEALTLGSLPPTFQGMKVYV--TDDKELIMEPLLKWAGNPNILIAAK 159
+ + F + +G P G+KVY D +++I++ + + GN I + K
Sbjct: 150 RGA--NAHLSTFSFTKVDVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEIDLEIK 207
Query: 160 AFGLKATVQVVDLQVFAFPRITLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFG-ADAMA 218
+ +A V+ +Q+ R+ L+PL+ P + + + KP ++ I G + +
Sbjct: 208 RYFCRAGVK--SIQIHGTMRVILEPLIGDMPLVGALSIFFLRKPLLE--INWTGLTNLLD 263
Query: 219 IPGLYTYVQGLIKDQVANMYLWPKALEVQIMDPAKAMQK----PVGILNVKVLRAMKLKK 274
IPGL +I D ++N + P + V ++ + Q P G+L + + A L+
Sbjct: 264 IPGLNGLSDTIILDIISNYLVLPNRITVPLVSEVQIAQLRFPIPKGVLRIHFIEAQDLQG 323
Query: 275 KD-----LI-GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALEL 328
KD L+ G SDPY +++ + SK +K NL+P+WNE + +V + Q LE+
Sbjct: 324 KDTYLKGLVKGKSDPYGIIRVGNQIFQSK--VIKE-NLSPKWNEVYEALVYEHPGQELEI 380
Query: 329 QVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388
+++D E D +G +I L ++ +E LD +D E +G++ +++ +
Sbjct: 381 ELFD-EDPDKDDFLGSLMIDLIEVE----KERLLDEWFTLD------EVPKGKLHLKLEW 429
Query: 389 KPFKGDEIPPDM---DGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG--KYHTNPSARIL 443
D D D +A +G LL++ L A+++ K ++NP+ +
Sbjct: 430 LTLMPDAANLDKVLADIRADKDQASDGL--SSALLILYLDSARNLPSGKKINSNPNPLVQ 487
Query: 444 FR-GEEKKTKRIK-KNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGY 501
G + + +I+ K +P WEE F F + P D L VEV + +LG
Sbjct: 488 MSVGHKAQESKIRYKTSEPVWEENFTFFIHNPRRQD-LEVEVKDEQHQC-------SLGS 539
Query: 502 IGINLADVV--NNKRINEKYHLIDS-KNGRIQIELQWR 536
+ I L+ ++ +N IN+++ L +S N +++++ R
Sbjct: 540 LRIPLSQLLTSDNMTINQRFQLSNSGPNSTLKMKIALR 577
|
|
| FB|FBgn0039208 Esyt2 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 2.6e-35, P = 2.6e-35
Identities = 111/442 (25%), Positives = 212/442 (47%)
Query: 56 LPEIPLWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEF 115
+ E+P WV PD +R +WLNK ++ +WP + V+ET++P +A + YK+ F
Sbjct: 143 IDELPAWVYFPDVERCEWLNKILKQVWPNANHFARTLVKETIEPNVALALANYKMHGFRF 202
Query: 116 EALTLGSLPPTFQGMKVYV--TDDKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQ 173
+ + LG++PP G+K+Y D E+IM+ L +A + +I G+K ++ D Q
Sbjct: 203 DRIILGTIPPRIGGVKIYDKNVDRNEIIMDLDLFYASDCDINFYLG--GMKGGIK--DFQ 258
Query: 174 VFAFPRITLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFGA-DAMAIPGLYTYVQGLIKD 232
+ + R+ +KPL+ + P + + + P++DF L G D M +PGL ++ +I +
Sbjct: 259 IHGWVRVVMKPLIRSMPLVGGLQIFFLNNPNIDFN--LVGVIDFMDMPGLSDLLRRIIVE 316
Query: 233 QVANMYLWPKALEVQIMDPAKA----MQKPVGILNVKVLRAMKLKKKDLI----GASDPY 284
Q+ N+ + P L + + + A M +P GIL + V+ A L KKD+ G SDPY
Sbjct: 317 QIGNVMVLPNKLPISLSEEVSAVALKMPEPEGILRIHVVEAKDLMKKDISVLGKGKSDPY 376
Query: 285 VKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGM 344
+ + + KT + N+NP+W+ V Q +E+Q+ D + + +G
Sbjct: 377 AIINVGAQEF---KTQIIDNNVNPKWDYWCEATVFIEMGQFVEIQLKDSDDSKKDENLGR 433
Query: 345 NVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPN 404
I + + + + L L D ++ G + V + + D P D+
Sbjct: 434 ASIDIASVIKKGVVDSWLTL------EDAKH----GLLHVRLQWYKLTAD--PNDLQQIL 481
Query: 405 SVQKAPEGTPEGGGLLVVILHEAQDV-EGKYHTNPSARIL--FRGEEKKTKRIKKNRDPR 461
+ T +L V + A+ + + + + P ++ ++++T I ++ P
Sbjct: 482 LETQLLRVTSMSSAVLSVFIDSARHLKQARSSSKPDPYLVCSVNKQKQQTAMIMRDDSPV 541
Query: 462 WEEEFQFTLEEPPTDDKLHVEV 483
WE+ F F + P ++ L++++
Sbjct: 542 WEQGFTFLVSNPD-NESLNIKI 562
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| UNIPROTKB|A0FGR8 ESYT2 "Extended synaptotagmin-2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 384 (140.2 bits), Expect = 1.8e-34, P = 1.8e-34
Identities = 129/513 (25%), Positives = 244/513 (47%)
Query: 44 LAEQDSKTVELLLP--EIPLWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPII 101
L E + + V L + ++P WV PD +R +WLNK ++ MWPF+ + I K RET++P +
Sbjct: 166 LLEDEERVVRLGVRACDLPAWVHFPDTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAV 225
Query: 102 AEQIPQYKIDSVEFEALTLGSLPPTFQGMKVYV--TDDKELIMEPLLKWAGNPNILIAAK 159
+ + F + +G P G+KVY D +++I++ + + GN I + K
Sbjct: 226 RGA--NTHLSTFSFTKVDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIK 283
Query: 160 AFGLKATVQVVDLQVFAFPRITLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFG-ADAMA 218
+ +A V+ +Q+ R+ L+PL+ P + + + KP ++ I G + +
Sbjct: 284 RYFCRAGVK--SIQIHGTMRVILEPLIGDMPLVGALSIFFLRKPLLE--INWTGLTNLLD 339
Query: 219 IPGLYTYVQGLIKDQVANMYLWPKALEVQIMDPAKAMQK----PVGILNVKVLRAMKLKK 274
+PGL +I D ++N + P + V ++ + Q P G+L + + A L+
Sbjct: 340 VPGLNGLSDTIILDIISNYLVLPNRITVPLVSEVQIAQLRFPVPKGVLRIHFIEAQDLQG 399
Query: 275 KD-----LI-GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALEL 328
KD L+ G SDPY +++ + S+ +K NL+P+WNE + +V + Q LE+
Sbjct: 400 KDTYLKGLVKGKSDPYGIIRVGNQIFQSR--VIKE-NLSPKWNEVYEALVYEHPGQELEI 456
Query: 329 QVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388
+++D E D +G +I L ++ +E LD +D R + + ++
Sbjct: 457 ELFD-EDPDKDDFLGSLMIDLIEVE----KERLLDEWFTLDEVPKGKLHLRLEWLT-LMP 510
Query: 389 KPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG--KYHTNPSARILFR- 445
D++ D+ +A +G LL++ L A+++ K +NP+ +
Sbjct: 511 NASNLDKVLTDIKADKD--QANDGL--SSALLILYLDSARNLPSGKKISSNPNPVVQMSV 566
Query: 446 GEEKKTKRIK-KNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGI 504
G + + +I+ K +P WEE F F + P D L VEV + L + K L + +
Sbjct: 567 GHKAQESKIRYKTNEPVWEENFTFFIHNPKRQD-LEVEVRDEQHQCSLGNLKVPLSQL-L 624
Query: 505 NLADVVNNKRINEKYHLIDS-KNGRIQIELQWR 536
D+ +++++ L +S N I++++ R
Sbjct: 625 TSEDMT----VSQRFQLSNSGPNSTIKMKIALR 653
|
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| UNIPROTKB|Q9BSJ8 ESYT1 "Extended synaptotagmin-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 4.3e-34, P = 4.3e-34
Identities = 134/509 (26%), Positives = 238/509 (46%)
Query: 49 SKTVELLLPEIPLWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQY 108
+KT+ + E+P WV PD ++ +WLNK + +WPFL + + K + ETV P + P
Sbjct: 117 AKTLYMSHRELPAWVSFPDVEKAEWLNKIVAQVWPFLGQYMEKLLAETVAPAVRGSNPH- 175
Query: 109 KIDSVEFEALTLGSLPPTFQGMKVYVTDDKELIMEPL-LKWAGNPNILIAAKAFGLKATV 167
+ + F + LG P G+KV+ KE I+ L + + G+ I + K + KA V
Sbjct: 176 -LQTFTFTRVELGEKPLRIIGVKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGV 234
Query: 168 QVVDLQVFAFPRITLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFG-ADAMAIPGLYTYV 226
+ +Q+ R+ L+PL+ P + + + +P +D I G + + IPGL +
Sbjct: 235 K--GMQLHGVLRVILEPLIGDLPFVGAVSMFFIRRPTLD--INWTGMTNLLDIPGLSSLS 290
Query: 227 QGLIKDQVANMYLWPKALEVQIM----DPAKAMQK-PVGILNVKVLRAMKLKKKD----- 276
+I D +A + P L V ++ D A+ P GI+ + +L A L KD
Sbjct: 291 DTMIMDSIAAFLVLPNRLLVPLVPDLQDVAQLRSPLPRGIIRIHLLAARGLSSKDKYVKG 350
Query: 277 LI-GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEK 335
LI G SDPY ++L S+ V LNP+W E + ++V + Q +E++V+D +
Sbjct: 351 LIEGKSDPYALVRLGTQTFCSR---VIDEELNPQWGETYEVMVHEVPGQEIEVEVFDKDP 407
Query: 336 VGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGD- 394
D +G + + + + +L + P + +GQV + + + D
Sbjct: 408 -DKDDFLGRMKLDVGKV-------LQASVLDDWFPL----QGGQGQVHLRLEWLSLLSDA 455
Query: 395 -EIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDV---EGKYHTNPSARILFRGEEKK 450
++ + V P+ P +LVV L AQD+ +G NP ++ + ++
Sbjct: 456 EKLEQVLQWNWGVSSRPD--PPSAAILVVYLDRAQDLPLKKGNKEPNPMVQLSIQDVTQE 513
Query: 451 TKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVV 510
+K + P WEE F+F L++P + + L V+V S + TLG + + LA ++
Sbjct: 514 SKAVYSTNCPVWEEAFRFFLQDPQSQE-LDVQVKDDSRAL-------TLGALTLPLARLL 565
Query: 511 NNKRI--NEKYHLIDS-KNGRIQIELQWR 536
+ ++ + L S N R+ ++L R
Sbjct: 566 TAPELILDQWFQLSSSGPNSRLYMKLVMR 594
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B6ETT4 | SYT2_ARATH | No assigned EC number | 0.7453 | 0.9962 | 0.9981 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00014388001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (539 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 538 | |||
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 5e-44 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 3e-25 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 4e-25 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 6e-25 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 6e-22 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 9e-20 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-17 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 1e-16 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 1e-15 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 2e-15 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 3e-15 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 5e-15 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 1e-14 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 3e-14 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 6e-14 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 8e-14 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 2e-13 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 2e-13 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 4e-13 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 4e-13 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 6e-13 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 7e-13 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 8e-13 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 1e-12 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 1e-12 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 1e-12 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 4e-12 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 5e-12 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 1e-11 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-11 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 3e-11 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 3e-11 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 5e-11 | |
| cd04021 | 125 | cd04021, C2_E3_ubiquitin_ligase, C2 domain present | 5e-11 | |
| cd04047 | 110 | cd04047, C2B_Copine, C2 domain second repeat in Co | 2e-10 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 2e-10 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 3e-10 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 1e-09 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 8e-09 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 9e-09 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 9e-09 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 1e-08 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 1e-08 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 1e-08 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 3e-08 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 4e-08 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 5e-08 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 6e-08 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 1e-07 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 1e-07 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 1e-07 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 1e-07 | |
| cd08393 | 125 | cd08393, C2A_SLP-1_2, C2 domain first repeat prese | 3e-07 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 5e-07 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 6e-07 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 7e-07 | |
| cd08382 | 123 | cd08382, C2_Smurf-like, C2 domain present in Smad | 1e-06 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 1e-06 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 1e-06 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 1e-06 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-06 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 2e-06 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 2e-06 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 3e-06 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 4e-06 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 5e-06 | |
| cd04029 | 125 | cd04029, C2A_SLP-4_5, C2 domain first repeat prese | 5e-06 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 6e-06 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 1e-05 | |
| cd08389 | 124 | cd08389, C2A_Synaptotagmin-14_16, C2A domain first | 1e-05 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 2e-05 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 2e-05 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 3e-05 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 3e-05 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 3e-05 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 1e-04 | |
| cd08678 | 126 | cd08678, C2_C21orf25-like, C2 domain found in the | 1e-04 | |
| cd04048 | 120 | cd04048, C2A_Copine, C2 domain first repeat in Cop | 2e-04 | |
| cd08406 | 136 | cd08406, C2B_Synaptotagmin-12, C2 domain second re | 3e-04 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 3e-04 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 3e-04 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 4e-04 | |
| cd08392 | 128 | cd08392, C2A_SLP-3, C2 domain first repeat present | 4e-04 | |
| cd08395 | 120 | cd08395, C2C_Munc13, C2 domain third repeat in Mun | 8e-04 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 0.001 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 0.001 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 0.003 | |
| cd08409 | 137 | cd08409, C2B_Synaptotagmin-15, C2 domain second re | 0.003 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 5e-44
Identities = 132/502 (26%), Positives = 214/502 (42%), Gaps = 73/502 (14%)
Query: 2 GVFGTILGFFGFGFGTV--IGLVGG--YFLFIYHQPTDIKDPEIQPLAEQDSKTVELLLP 57
V I G+ GF F ++ I LV Y I +I+D L +Q + E L
Sbjct: 165 SVASWIFGYLGFSFASLFFIILVTMYVYRTCIKRVRRNIRD-----LVQQ-ELSEEKLEN 218
Query: 58 EIPLWVKNPDYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEA 117
DY+ V+WLN F++ WP ++ +I + V + V +AE IP + ID++ +
Sbjct: 219 ---------DYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDE 268
Query: 118 LTLGSLPPTFQGMKVYV-TDDKELIME---------------PLLKWAGNPNILIA---A 158
TLGS PP G++ Y T+ ++M+ + + NP I +
Sbjct: 269 FTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKG 328
Query: 159 KAFGLKAT-VQVVDLQVFAFPRITLKPLVPTFPCFANIYVSLMEKPHVDFGIKL-----F 212
K+FG + V DL R+ ++ L+ +P + L+E P DF + F
Sbjct: 329 KSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFF 387
Query: 213 GADAMAIPGLYTYVQGLIKDQVANMYLWPKALEV---QIMDPAKAMQKPVGILNVKVLRA 269
G D AIPGL ++Q +I + M L P +L + QIM A +G++ VK+ A
Sbjct: 388 GVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIM--AGDSGTAIGVVEVKIKSA 445
Query: 270 MKLKKKDLI--GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALE 327
LKK D G DPY+ + +D + KT VK LNP WNE F +++ L
Sbjct: 446 EGLKKSDSTINGTVDPYITVTFSDRVIG--KTRVKKNTLNPVWNETFYILLNSFT-DPLN 502
Query: 328 LQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVL 387
L +YD+ +G + L + + KN RN K+ G++ ++
Sbjct: 503 LSLYDFNSFKSDKVVGSTQLDLALLHQNP-------VKKNELYEFLRNTKNVGRLTYDLR 555
Query: 388 YKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDV---EGKYHTNPSARILF 444
+ P D+ ++ G SV+ + G+L V L E + + K +
Sbjct: 556 FFPVIEDK--KELKG--SVEPLEDSNT---GILKVTLREVKALDELSSKKDNKSAELYTN 608
Query: 445 RGEEKKTKRIKKNRDPRWEEEF 466
E T ++K P W ++
Sbjct: 609 AKEVYSTGKLKFTNHPSWNLQY 630
|
Length = 1227 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 3e-25
Identities = 41/104 (39%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L V V+ A L KDL G SDPYVK+ L + KT V LNP WNE F V DP
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQ--KFKTKVVKNTLNPVWNETFEFPVLDP 58
Query: 322 EYQALELQVYDWEKVGHHDKMGMNVIPLKDITPE-EPREMTLDL 364
E L ++V+D ++ D +G IPL ++ + E+ L L
Sbjct: 59 ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 4e-25
Identities = 43/100 (43%), Positives = 52/100 (52%)
Query: 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD 320
L VK++ A L KD G SDPYVK+ L D KKT V LNP WNE F V
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 321 PEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360
PE LE++VYD ++ G D +G IPL D+ E
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEK 100
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 6e-25
Identities = 38/83 (45%), Positives = 47/83 (56%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L V V+ A L KDL G SDPYVK+ L K +KKT V LNP WNE F V P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 322 EYQALELQVYDWEKVGHHDKMGM 344
E L ++VYD+++ G D +G
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGE 83
|
Length = 85 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 6e-22
Identities = 42/103 (40%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L V V+ A L D G SDP+VK L +K+ KT + LNP WNE F + V
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKV--FKTKTIKKTLNPVWNESFEVPVPSR 58
Query: 322 EYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364
L+++VYDW++ G D +G I L D+ PEE E+TL L
Sbjct: 59 VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPL 101
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 9e-20
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKL----TDDKLPSKKTTVKHRNLNPEWNEEFGL 316
IL VKVL + L KKD+ GASDPYVK+ L + ++ S +T + LNP+WNEEF
Sbjct: 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60
Query: 317 VVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPRE 359
V +P L +V+D ++ D +G +PL ++ E P
Sbjct: 61 RV-NPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGN 102
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVV 318
+G+L V+V+R L +D +SDPYV L L + K+ KT V +NLNP WNEE L V
Sbjct: 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKV---KTRVIKKNLNPVWNEELTLSV 56
Query: 319 KDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDI 352
+P L+L+V+D + D MG I L+ +
Sbjct: 57 PNPM-APLKLEVFDKDTFSKDDSMGEAEIDLEPL 89
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 1e-16
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEF---GLVV 318
L +K+L+A++L KD G SDP+VK+ L DK +T VK +NLNP WNE F G
Sbjct: 18 LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 77
Query: 319 KDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364
+ + + L LQV D+++ +D +G +PL + E + DL
Sbjct: 78 EKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-15
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L++ + L +D G SDPYVK K K K T+ ++NLNP W+E+F L ++D
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKY-GGKTVYKSKTI-YKNLNPVWDEKFTLPIEDV 59
Query: 322 EYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQ 381
Q L ++V+D+++ D MG + L + +P E+ L L D +++ G
Sbjct: 60 T-QPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKL------EDPNSDEDLGY 112
Query: 382 VVVEV 386
+ + V
Sbjct: 113 ISLVV 117
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-15
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVK 319
G L VKV+RA L D+ G SDP+ L+L + +L +T ++ LNPEWN+ F +K
Sbjct: 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARL---QTHTIYKTLNPEWNKIFTFPIK 57
Query: 320 DPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTL 362
D + LE+ VYD +K + +G IPL I E + L
Sbjct: 58 DI-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERKWYAL 99
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 3e-15
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
G L V +L A LKK D+ G SDPYVK+ L + +L KKTT+K R LNP +NE F
Sbjct: 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74
Query: 318 VKDPEYQALEL--QVYDWEKVGHHDKMG 343
V + Q + L V D++++G +D +G
Sbjct: 75 VPFEQIQKVHLIVTVLDYDRIGKNDPIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 5e-15
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL-PSK-KTTVKHRNLNPEWNEEFGLV 317
L V ++R + L D G SDP+VKL L D SK KT VK + LNPE+NEEF
Sbjct: 13 RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72
Query: 318 VKDPEY--QALELQVYDWEKVGHHDKMG 343
+K + + LE+ V+D + +D +G
Sbjct: 73 IKHSDLAKKTLEITVWDKDIGKSNDYIG 100
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-14
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLT--DDKLPSKKTTVKHRNLNPEWNEEFGLV 317
+ V +++A LK D+ G SDPYVK+ L D ++ KKT +K R LNP +NE F
Sbjct: 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74
Query: 318 VKDPEYQ----ALELQVYDWEKVGHHDKMG 343
+ P + L + V D +++ +D +G
Sbjct: 75 I--PLERLRETTLIITVMDKDRLSRNDLIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 3e-14
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKK--TTVKHRNLNPEWNEEFGLVVK 319
L V +++A L D+ G SDPYVK+ L DK KK T V + LNP +NE F V
Sbjct: 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFTFKVP 75
Query: 320 DPEYQA--LELQVYDWEKVGHHDKMGMNVIPLKDI 352
E L VYD+++ HD +G +PL +
Sbjct: 76 YSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 6e-14
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD 320
++ V V+RA L+ KD G SDPY+K+KL K+ + + LNP + + F L
Sbjct: 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATL 59
Query: 321 PEYQALELQVYDWEKVGHHDKMGMNVIPLKD 351
P L++ V D++ +G D +G VI L+D
Sbjct: 60 PGNSILKISVMDYDLLGSDDLIGETVIDLED 90
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 8e-14
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 260 GILNVKVLRAMKLKKKDLI------GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEE 313
G+L + V+ A L KD G SDPYV +++ K+ V NLNP+WNE
Sbjct: 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTF---KSKVIKENLNPKWNEV 57
Query: 314 FGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDI 352
+ VV + Q LE++++D E D +G I L +
Sbjct: 58 YEAVVDEVPGQELEIELFD-EDPDKDDFLGRLSIDLGSV 95
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-13
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLPSKKTTVKHRNLNPEWNEEFGLVVK 319
L V VL+A L D G SDPYVK+ L KL KKT+VK LNP +NE F V
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 320 DPEYQ--ALELQVYDWEKVGHHDKMG 343
+ + +L + V D + VG ++ +G
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIG 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-13
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEE--FG 315
G L + +++A LK D+ G SDPYVK+ L + +L KKT+VK LNP +NE F
Sbjct: 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73
Query: 316 LVVKDPEYQALELQVYDWEKVGHHDKMGM 344
+ ++ + +L + V D+++VGH++ +G+
Sbjct: 74 VPPENVDNVSLIIAVVDYDRVGHNELIGV 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-13
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 25/131 (19%)
Query: 264 VKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSK--KTTVKHRNLNPEWNEEFGLVVKDP 321
++++RA LK G SDPYV L D + KT + LNP W+EEF L V
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTL--VDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG 62
Query: 322 EYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEE------PREMTLDLLKNMDPNDTRN 375
E + V+D VG HD G + L P+ PRE+ LDL D
Sbjct: 63 EPLWISATVWDRSFVGKHDLCGRASLKL---DPKRFGDDGLPREIWLDL----DT----- 110
Query: 376 EKSRGQVVVEV 386
+G++++ V
Sbjct: 111 ---QGRLLLRV 118
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-13
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 260 GILNVKVLRAMKLKKKDL--IGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLV 317
G+L V V+ A L KD G SDPY L + + KT LNP+WN
Sbjct: 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRF---KTQTIPNTLNPKWNYWCEFP 57
Query: 318 VKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMT 361
+ + Q L+L ++D ++ D +G I L+++ + +
Sbjct: 58 IFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQS 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 6e-13
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L VL A L KD G SDP+V++ + +T+V ++ P WNE F + +
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQ---TLETSVVKKSCYPRWNEVFEFELMEG 58
Query: 322 EYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRG 380
L ++V+DW+ V +D +G V ++ + + E LL P+ E+S G
Sbjct: 59 ADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLL----PDPRAEEESGG 113
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 7e-13
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD 320
++ + ++ L D G SDPYVK +L ++K SK V + LNP+W E+F L + D
Sbjct: 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSK---VCSKTLNPQWLEQFDLHLFD 57
Query: 321 PEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRG 380
+ Q LE++V+D + + +G I L + E+ + L+L E G
Sbjct: 58 DQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL-----------EDGEG 106
Query: 381 QVV 383
++
Sbjct: 107 SLL 109
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 8e-13
Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 34/137 (24%)
Query: 247 QIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKL------------KLTDDKL 294
+++ + + P+ +L V V+ A L KD+ G SDPY L K K
Sbjct: 15 ALLERVREAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKS 74
Query: 295 PSKK--------------TTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340
KK T VK + LNP WNE F V+D L L ++D HD
Sbjct: 75 HRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWD------HD 128
Query: 341 K--MGMNVIPLKDITPE 355
+G IPLKD+
Sbjct: 129 DDFLGCVNIPLKDLPSC 145
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-12
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 251 PAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEW 310
P M + G L + + L D G SDP+VKL L + + KT V + LNP W
Sbjct: 1031 PPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSV--YKTKVVKKTLNPVW 1088
Query: 311 NEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEP 357
NEEF + V + L + V DW+ +D +G I L + P
Sbjct: 1089 NEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135
|
Length = 1227 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-12
Identities = 33/107 (30%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGL 316
K +GILNVK+++A L+ +D G +DPY K++L D+ +K++ + + LNPE++E F
Sbjct: 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVF 72
Query: 317 VVK--DPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMT 361
V + + LE+ +YD+++ + +G+ +PL ++ E ++
Sbjct: 73 EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLW 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-12
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPS--KKTTVKHRNLNPEWNEEFGLVVK 319
L V+V A L D G SDPYVKLKL D +KT + LNP WNE F +K
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 320 DP-EYQALELQVYDWEKVGHHDKMG 343
+ + L ++V+DW++ +D MG
Sbjct: 75 PADKDRRLSIEVWDWDRTTRNDFMG 99
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-12
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKL---TDDKLPSKKTTVKHRNLNPEWNEEFGLVV 318
L V+VLRA + K DL+ D YV+L L +D+K +K T+K+ ++NP WNE F +
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTK--TIKN-SINPVWNETFEFRI 58
Query: 319 KDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKS 378
+ LEL V D E D +G + + + E +T L N +
Sbjct: 59 QSQVKNVLELTVMD-EDYVMDDHLGTVLFDVSKLKLGEKVRVTFSL----------NPQG 107
Query: 379 RGQVVVEVL 387
+ ++ VE L
Sbjct: 108 KEELEVEFL 116
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-12
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLPSKKTTVKHRNLNPEWNEEF---GL 316
L+ ++RA LK D G SDPYVKL L K +T H+ NPE+NE G+
Sbjct: 17 LHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGI 76
Query: 317 VVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364
+D + + L L V D ++ +D +G IPLK + P + ++ + L
Sbjct: 77 TEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL 123
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-11
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 16/126 (12%)
Query: 259 VGILNVKVLRAMKLKKKDLIGAS-DPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLV 317
+G+L V + A LK D+IG + DPYV +++ + +T VK NP WNE ++
Sbjct: 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRE-LARTKVKKDTSNPVWNETKYIL 59
Query: 318 VKDPEYQALELQVYDWEKVGHHD--KMGMNVIPLKDI-TPEEPREMTLDLLKNMDPNDTR 374
V + L L VYD +G L + E +T +LL R
Sbjct: 60 VNSLT-EPLNLTVYD--FNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLL--------R 108
Query: 375 NEKSRG 380
N K G
Sbjct: 109 NGKPVG 114
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-11
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L V+V+ A L KD G+S YV+L K K+T K ++LNP WNE+ V DP
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDP 58
Query: 322 E---YQALELQVYD 332
LE+ VY+
Sbjct: 59 SRLSNLVLEVYVYN 72
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-11
Identities = 39/127 (30%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 277 LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEF----GLVVKDPEYQALELQVYD 332
L G D K+ K KKT V LNP WNE F E LE+ V D
Sbjct: 11 LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDES--LEIVVKD 65
Query: 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFK 392
+EKVG + +G + L+D+ E E+T LL D+ + + +EV Y+P
Sbjct: 66 YEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLL------DSNGRPTGATISLEVSYQPPD 119
Query: 393 GDEIPPD 399
G
Sbjct: 120 GAVGGWA 126
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-11
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVK 319
L V VL+A L K D+ G +DPYVK+ L K + KKT VK LNP +NE F +
Sbjct: 17 LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76
Query: 320 DPEYQ--ALELQVYDWEKVGHHDKMG 343
E + ++E V D ++V ++ +G
Sbjct: 77 SEELEDISVEFLVLDSDRVTKNEVIG 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 5e-11
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD 320
+L V + A L PYV+L + ++K+ VK R NP W E F +V++
Sbjct: 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRN 57
Query: 321 PEYQALELQVYDWEKVGHHDK-MGMNVIPLKDITPEEPREMTLD 363
PE Q LE++V D K +G +PL ++ E ++TLD
Sbjct: 58 PENQELEIEVKD----DKTGKSLGSLTLPLSELLKEP--DLTLD 95
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 5e-11
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L + V A KLK DPYV++ T D P KKT V + NP+WNE F ++V
Sbjct: 4 LQITVESA-KLKSNSKSFKPDPYVEV--TVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-- 58
Query: 322 EYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPR-----EMTLDLLKNMDPNDTRNE 376
LE +V+ + +G + L DI ++TL+L N +
Sbjct: 59 PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNL---SSENKGSSV 115
Query: 377 KSRGQVVV 384
K G++ V
Sbjct: 116 KV-GELTV 122
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-10
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 267 LRAMKLKKKDLIGASDPYVKL-KLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVV----- 318
KL KKD G SDP++++ + ++D + +T V LNP W F + +
Sbjct: 7 FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCN 65
Query: 319 KDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTL 362
D + + ++++VYD++ G HD +G L ++ P E L
Sbjct: 66 GDYD-RPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSPLEFEL 108
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-10
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 262 LNVKVLRAMKLKKKDLIGA-SDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD 320
L V +++A L + A DP+VK+ L D+ S ++ VK + NP ++E F V
Sbjct: 16 LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSF 75
Query: 321 PEYQA--LELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366
E Q L L VYD ++ H +G + PLKD+ + + DL
Sbjct: 76 KELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL--PSKKTTVKHRNLNPEWNEEFGLVVK 319
L V V + L D DPYV+L L DK +KT+VK NLNP ++E F V
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77
Query: 320 DPEYQALELQVYDWEKVG----HHDKMGMNVIPLKDI 352
E + L V +G +I L D+
Sbjct: 78 LEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL 114
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-09
Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 23/118 (19%)
Query: 260 GILNVKV-----LRAMKLKKKDLIGASDPYVKLKLTDDKLPS--KKTTVKHRNLNPEWNE 312
G L V + L KKK S+PYVK+ L DK +KT+VK NP +NE
Sbjct: 14 GSLEVHIKECRNLAYADEKKK----RSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNE 69
Query: 313 EFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNV------IPLK--DITPEEPREMTL 362
+ + + LQ+ W HHD+ G N IPL D+ ++ L
Sbjct: 70 TLKYHISKSQLETRTLQLSVW----HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 8e-09
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 420 LVVILHEAQDVEGKYHTN---PSARILF-----RGEEKKTKRIKKNRDPRWEEEFQF--T 469
L+V +H+ +++ ++ P R+ + +KT K N +P ++E F+F +
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVS 77
Query: 470 LEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHL 521
LEE L V V ++ S + K+ LG + I+L+D+ +K + Y L
Sbjct: 78 LEELK-RRTLDVAVKNSKSFLS--REKKLLGQVLIDLSDLDLSKGFTQWYDL 126
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 9e-09
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 420 LVVILHEAQD---VEGKYHTNPSARILFRGEE---KKTKRIKKNRDPRWEEEFQFTLEEP 473
L V + A++ + ++P ++ G++ KKTK +K +P W E F F + P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 474 PTDDKLHVEV 483
+ L +EV
Sbjct: 61 ELAE-LRIEV 69
|
Length = 85 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 9e-09
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 260 GILNVKVLRAMKLKKKDL-IGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVV 318
G+L V + RA L K D G+SDPYV P T + ++LNP W E + ++V
Sbjct: 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60
Query: 319 KDPEYQA---LELQVYDWEKVGHHDKMGMNVIPLKDITPEEP----REMTL 362
E +A L +++D ++ D++G I LK++ + RE
Sbjct: 61 TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIEDRNWMGRREDGF 111
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-08
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKK--TTVKHRNLNPEWNEEF--- 314
L V VL+A L +D +PYVK+ L D+ K T + LNPEWN+ F
Sbjct: 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYS 75
Query: 315 GLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKD 351
+ + + + LE+ V+D+++ G +D +G VI L D
Sbjct: 76 NVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLAD 112
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 10/130 (7%)
Query: 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLV 317
P + V V A L K+D G +DPYV +K + + ++ V+ L+PE++ +
Sbjct: 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESV---RSPVQKDTLSPEFDTQAIFY 57
Query: 318 VKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEK 377
K P +QV++ + + +G + + R + L +
Sbjct: 58 RKKPRSPIK-IQVWNSNLLC-DEFLGQATLSADPNDSQTLRTLPL-----RKRGRDAAGE 110
Query: 378 SRGQVVVEVL 387
G + V+V
Sbjct: 111 VPGTISVKVT 120
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-08
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 274 KKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE-YQALELQVYD 332
KK+L+ DPYV++ K+ KT+VK + NPEWNE+ P + +++Q+ D
Sbjct: 31 KKELV---DPYVEVSFAGQKV---KTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRD 84
Query: 333 WEKVGHHDKMGMNVIPLKDI 352
W++VG+ D +G + I L I
Sbjct: 85 WDRVGNDDVIGTHFIDLSKI 104
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 3e-08
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKL-TDDKL-PSKKTTVKHRNLNPEWNEEFGLV 317
G LNV ++RA +L + D+ SDP+VK++L KL +KKT+ ++P +NE F
Sbjct: 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK 73
Query: 318 VKDPEYQ--ALELQVYDWEKVGHHDKMGMNVI 347
V E + +L VY +D +G VI
Sbjct: 74 VPQEELENVSLVFTVYGHNVKSSNDFIGRIVI 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-08
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 420 LVVILHEAQDVEGKY---HTNPSARILFRGEEK-KTKRIKKNRDPRWEEEFQFTLEEPPT 475
L V + EA+++ K ++P ++ G++K KTK +K +P W E F+F + +P +
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 476 DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522
D L VEV + LG + I L++++++ + E + +
Sbjct: 61 -DTLTVEVWDKDR----FSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 5e-08
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVK 319
G+L + + +A LK + +G DPYV++ + + + +T LNP W+E + V
Sbjct: 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLV--NGIVKGRTVTISNTLNPVWDEVLYVPVT 58
Query: 320 DPEYQALELQVYDWEKVGHHDKMGMNVIPLKDI------------TPEEPREMTLDLLKN 367
P Q + L+V D+EKVG +G I + D+ EE R L LK
Sbjct: 59 SPN-QKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGKYVEYDDEEERLKRLLSLKG 117
Query: 368 M 368
+
Sbjct: 118 V 118
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-08
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDD----KLPSKKTTVKHRNLNPEWNEEFGLV 317
L V++L A L D G+SDP+VK++L +P+ KT VK + L P ++E F
Sbjct: 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77
Query: 318 VKDPEYQA----LELQVYDWEKVGHHDKMGMNVIPLKDI 352
V + L V D++ +G +D G +PL DI
Sbjct: 78 VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-07
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 420 LVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPP-TDDK 478
LVV L ++GK + A++ FRG +KKT+ ++ +P W E F++ L P D+
Sbjct: 1 LVVSLKNLPGLKGKG--DRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDES 58
Query: 479 LHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKN 526
L + V ++G +G ++L D+V+ + L+DS
Sbjct: 59 LEIVVKDY-EKVG---RNRLIGSATVSLQDLVSEGLLEVTEPLLDSNG 102
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-07
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 437 NPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTD-DKLHVEVISTSSRMGLLH 494
+P A + G+ T+ KK +P W +F + TD K V V+ R
Sbjct: 14 SPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLV----TDRRKSRVTVVVKDDRD---R 66
Query: 495 PKETLGYIGINLADVVNNKRINEKYH-LIDSKNGRIQIELQWR 536
LG + I+L D+++ + +++ L + GRI+I W+
Sbjct: 67 HDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRIRISALWK 109
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-07
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 261 ILNVKVLRAMKLKKKDLIGAS--DPYVKLKLT---DDKLPSKKTTVKHRN-LNPEWNEEF 314
L +K++ +L K S DPYV++++ D KT V N NP WNE F
Sbjct: 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETF 62
Query: 315 GLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLK 350
V PE L VYD + G D +G +PL
Sbjct: 63 EFDVTVPELAFLRFVVYDEDS-GDDDFLGQACLPLD 97
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 1e-07
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEF 314
+++ V+ A L KD G SDPYV +++ K K+T +NLNP WNE+F
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKF 52
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-07
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 267 LRAMKLKKKDLIGA------SDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVV 318
L ++ +DL A SDPYVK L DK +KT+VK + LNP +NE V
Sbjct: 17 LHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKV 76
Query: 319 KDPEYQALELQVYDWEKVGHHDKMGMNV 346
+ E L + W H D +G N
Sbjct: 77 EREELPTRVLNLSVW----HRDSLGRNS 100
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-07
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 419 LLVVILHEAQDVEGK---YHTNPSARILFRGEE---KKTKRIKKNRDPRWEEEFQFTLEE 472
L V + A+++ K ++P ++ G+ KKTK +K +P W E F+F +
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEV-P 59
Query: 473 PPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRI 515
PP +L +EV + +G + I L+D++ R
Sbjct: 60 PPELAELEIEVYD----KDRFGRDDFIGQVTIPLSDLLLGGRH 98
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPS--KKTTVKHRNLNPEWNEEF--- 314
G L+V V A L G SD +VK L DK +KT V +++NP WN F
Sbjct: 27 GELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYD 86
Query: 315 GLVVKDPEYQALELQVYDWEKVGHHDKMG 343
G+ +D LEL V+D +K+ +D +G
Sbjct: 87 GVSPEDLSQACLELTVWDHDKLSSNDFLG 115
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-07
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 418 GLLVVILHEAQDVEG---------KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQF 468
G+L + + EAQD+ K ++P + + K+K IK+N +P+W E ++
Sbjct: 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60
Query: 469 TLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGR 528
++E P +L +E+ + LG + I+L V I+E L D K+GR
Sbjct: 61 VVDEVPGQ-ELEIELFDED-----PDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGR 114
Query: 529 IQIELQW 535
+ ++L+W
Sbjct: 115 LHLKLEW 121
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 12/127 (9%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
+ + VL A L K+DL DP+ + + + + T V + L+P+WNE F L V
Sbjct: 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQ--THSTDVAKKTLDPKWNEHFDLTVGPS 59
Query: 322 EYQALELQVYDWEKVGHHDK--MGMNVIPLKDITP-EEPREMTLDLLK-NMDPNDTRNEK 377
+ +QV+D +K D+ +G I + P ++ LDL K N +
Sbjct: 60 S--IITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSV--- 114
Query: 378 SRGQVVV 384
RG++VV
Sbjct: 115 -RGKIVV 120
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-06
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L ++++ L KD+ G+SDPY +K+ D +T + LNP W EE+ + + P
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKV--DNEVIIRTATVWKTLNPFWGEEYTVHLP-P 58
Query: 322 EYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQ 381
+ + V D + + D +G V +++ PR +D N+ D +E+ +G+
Sbjct: 59 GFHTVSFYVLDEDTLSRDDVIG-KVSLTREVISAHPR--GIDGWMNLTEVDP-DEEVQGE 114
Query: 382 VVVEV 386
+ +E+
Sbjct: 115 IHLEL 119
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-06
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 264 VKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEF-----GLVV 318
V VL+A L K G +D YV ++L +K T+VK + +P W EE GL+
Sbjct: 3 VTVLQARGLLCKGKSGTNDAYVIIQLGKEKY---STSVKEKTTSPVWKEECSFELPGLLS 59
Query: 319 KDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKS 378
+ L+L V +G +G IPL D+ ++ R T P ++K
Sbjct: 60 GNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGK--DDKE 117
Query: 379 RGQVVVEV 386
RG++ V++
Sbjct: 118 RGEIEVDI 125
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 17/105 (16%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLT-DDKLPSKKTTVKHRNLNPEWNEEF------ 314
L+V+VL L K G DP+ ++ L K +K+T VK + NP ++E F
Sbjct: 1 LSVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 315 ---------GLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLK 350
+ +D E L ++++ V D +G IPL+
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQ 104
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTV-KHRNLNPEWNEEFGLVV 318
G L V ++ A L+ D +G DPYV ++ + +K+ V K NPEWNE+F V
Sbjct: 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQC---RTQERKSKVAKGDGRNPEWNEKFKFTV 57
Query: 319 KDPEYQA---LELQVYDWEKVGHHDKMGMNVIPLKDI 352
+ P + L L++ D + D +G I LK +
Sbjct: 58 EYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 262 LNVKVLRAMKLKKKDL-IGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEF---GLV 317
L V ++ L D G SDPYVKL+L +K KT V + NP ++E F G+
Sbjct: 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIP 77
Query: 318 VKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364
+ +L V +++ D +G V PL E+ +
Sbjct: 78 YNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSR 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L V V+ A L D + +VK +L + L ++ + RN NP WNEE V +P
Sbjct: 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTR--PSQTRNGNPSWNEELMFVAAEP 59
Query: 322 EYQALELQVYDWEKVGHHDKMGMNVIPLKDITP 354
L L V D + +G VIPL DI
Sbjct: 60 FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIER 92
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 282 DPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEF---GLVVKDPEYQALELQVYDWEKV 336
DPYVK L D K +KT V + NP +NE GL V+D + + L++ V+ + +
Sbjct: 34 DPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93
Query: 337 GHHDKMGMNVIPLKD 351
++ +G IPLK
Sbjct: 94 VENEFLGGVCIPLKK 108
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 255 MQKPVGI--LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNE 312
Q+ GI L V ++ LK + G SDPY ++ + KT V LNP+WN
Sbjct: 8 SQRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQ---EHKTKVVSDTLNPKWNS 64
Query: 313 EFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEE 356
VKD E L + V+D + D +G I + DI E
Sbjct: 65 SMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKET 108
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-06
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 19/128 (14%)
Query: 421 VVILHEAQD--VEGKYHTNPSARILFRGEEK-KTKRIKKNRDPRWEEEFQFTL----EEP 473
V + +A+ +GK TN + I+ G+EK T +K P W+EE F L
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGN 61
Query: 474 PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADV--VNNKRINEKYHLIDSKNG---- 527
L + V+ + LL + LG + I L D+ +R + L +SK G
Sbjct: 62 GNRATLQLTVMHRN----LLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKL-ESKPGKDDK 116
Query: 528 -RIQIELQ 534
R +IE+
Sbjct: 117 ERGEIEVD 124
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-06
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 281 SDPYVKLKLTDDKLPS--KKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338
S+PYVK L DK +KT++K NP +NE + + + LQ+ W H
Sbjct: 37 SNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW----H 92
Query: 339 HDKMGMN 345
+D+ G N
Sbjct: 93 YDRFGRN 99
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-06
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 13/130 (10%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHR-NLNPEWNEEFGLVV 318
G L V VL+A L K + DPY L++ +KKT R +PEW+EE +
Sbjct: 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG---VTKKTKTDFRGGQHPEWDEELRFEI 57
Query: 319 KDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKS 378
+ + L++ V+D +K D +G + L E + +L T +
Sbjct: 58 TEDKKPILKVAVFDDDK-RKPDLIGDTEVDLSPALKEGEFDDWYEL--------TLKGRY 108
Query: 379 RGQVVVEVLY 388
G+V +E+ +
Sbjct: 109 AGEVYLELTF 118
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-05
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 436 TNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEV 483
++P R+ + G+ +T +KK+ PRW E F+F L E D L VEV
Sbjct: 21 SDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA-DSPLSVEV 67
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 254 AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSK----KTTVKHRNLNPE 309
+ +K L V V+RA + KD GAS V L L LPSK KT V+ NP
Sbjct: 14 SARK----LTVTVIRAQDIPTKDRGGASSWQVHLVL----LPSKKQRAKTKVQRGP-NPV 64
Query: 310 WNEEFGLVVKDPE---YQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364
+NE F +PE AL ++Y E++ +G V+PL + E + L L
Sbjct: 65 FNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 32/112 (28%)
Query: 260 GILNVKVLRAMKLK-------------KKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNL 306
G L +K+ A+ LK L+ DPYV + + D + KT+ K +
Sbjct: 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLL---DPYVSIDVDDTHI--GKTSTKPKTN 58
Query: 307 NPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNV------IPLKDI 352
+P WNEEF V + + LEL V+ H +G + I +D+
Sbjct: 59 SPVWNEEFTTEVHNG--RNLELTVF------HDAAIGPDDFVANCTISFEDL 102
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-05
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 298 KTTVKHRNLNPEWNEEFGLVVKDPEYQ-ALELQVYDWEKVGHHDKMGMNVIPLKDITPEE 356
+T+ + LNP +NE V E ++ +V D +K +D + + ++++
Sbjct: 40 RTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99
Query: 357 PRE 359
P+
Sbjct: 100 PQP 102
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-05
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 419 LLVVILHEAQD---VEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPT 475
LL V L A++ + +P + +K+K ++ +P WEE F F L P
Sbjct: 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTF-LVRNPE 59
Query: 476 DDKLHVEVI 484
+ +L +EV
Sbjct: 60 NQELEIEVK 68
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 273 KKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYD 332
+ G PY +L L + T VK + NP WN +V D + + V D
Sbjct: 5 TSESKTGLLSPYAELYLNGKLV--YTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKD 62
Query: 333 WEKVGHHDKMGMNVIPLKDI 352
++ H +G I L D+
Sbjct: 63 -DRDRHDPVLGSVSISLNDL 81
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 446 GEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGIN 505
G ++TK + + P W+E F + + PP KLH+ + + G K +LG + I
Sbjct: 2010 GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHI-SCKSKNTFG----KSSLGKVTIQ 2064
Query: 506 LADVVNNKRINEKYHLID--SKNG---RIQIELQW 535
+ VV + +Y L +K+G ++IE QW
Sbjct: 2065 IDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQW 2099
|
Length = 2102 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 449 KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEV 483
+KTK IKK +P W E F F L+ D +L +EV
Sbjct: 52 QKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEV 86
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
L VK ++A L + G+S+PY L++ D+ +++ + NP W+E F + P
Sbjct: 1 LLVKNIKANGLSEA--AGSSNPYCVLEM-DEPPQKYQSSTQKNTSNPFWDEHFLFELS-P 56
Query: 322 EYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQ 381
+ L +VYD K +G+ ++P ++ L + G
Sbjct: 57 NSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQ----GRPYEGDSVSGS 112
Query: 382 VVVEVLYKPFKGDEIP 397
+ VE L+ + E+P
Sbjct: 113 ITVEFLF--MEPAELP 126
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 272 LKKKDLIGASDPYVKLKLTDDKLPSKK------TTVKHRNLNPEWNEEFGLVVKD--PEY 323
L KD++ SDP+V + + S + T V NLNP++ F V E
Sbjct: 12 LLDKDVLSKSDPFVVVYVKTG--GSGQWVEIGRTEVIKNNLNPDFVTTF--TVDYYFEEV 67
Query: 324 QALELQVYD----WEKVGHHDKMGMNVIPLKDI 352
Q L +VYD + + HD +G L +I
Sbjct: 68 QKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120 |
| >gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVK 319
L V V++A L + +DP+VK+ L D K+ KKT+VK + NP +NE V
Sbjct: 17 LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVP 76
Query: 320 DPEYQALELQV 330
Q L L+V
Sbjct: 77 AIVLQDLSLRV 87
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTV-KHRNLNPEWNEEFGLVVK 319
L + ++ A LK +L G Y + + D + T V + NP WNE +
Sbjct: 1 TLEITIISAEDLKNVNLFGKMKVYAVVWI--DPSHKQSTPVDRDGGTNPTWNETLRFPLD 58
Query: 320 DPEYQ----ALELQVYDWEKVGHHDK-MGMNVIPLKDI 352
+ Q AL ++VY E+ DK +G +PLKD+
Sbjct: 59 ERLLQQGRLALTIEVYC-ERPSLGDKLIGEVRVPLKDL 95
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 264 VKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEY 323
V+V+ A +L G DP VK+++ K K T+VK P +NE F +
Sbjct: 8 VRVIEARQLVG----GNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPD 60
Query: 324 ----QALELQVYDWEKVGHHDKMG 343
+ +++ VYD + +G
Sbjct: 61 ELFDKIIKISVYDSRSLRSDTLIG 84
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 445 RGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEV 483
+ + K+TK KK +PR++E F F L + +K +V
Sbjct: 32 KTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKV 70
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 283 PYVKLKLTDDKLPS--KKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340
PYVK+ L DK + +KT VK +NP +NE VV+ + +LQV W
Sbjct: 39 PYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKR 98
Query: 341 K--MGMNVIPLKDITPEEPREMTLD 363
+ +G +IPL D E+
Sbjct: 99 RVFLGEVLIPLADWDFEDTDSQRFL 123
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176041 cd08395, C2C_Munc13, C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 8e-04
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKK----TTVKHRNLNPEWNEEFGLV 317
+ VKV+ A LK + G P+V++ L L KK T K+ N +P++NE F +
Sbjct: 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFI 60
Query: 318 V---KDPEYQALELQVYDWEKVGHHDKM-GMNVIPLKDITPEEPREMTLDLLKNMDPNDT 373
+ DPE L + V D+ D++ G+ V+ L+DI L L + + ++T
Sbjct: 61 LGNEDDPESYELHICVKDY-CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHMDET 119
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins.C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 262 LNVKVLRAMKLKKKD-LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWN-EEFGLVVK 319
L V+V+ A L D +D +V++K + KT V ++LNP WN E F V
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVD 57
Query: 320 DPEYQ--ALELQVYDWEKVGHHDKMGMNVIPLK 350
D E Q L+++V D + +D +G I L
Sbjct: 58 DEELQDEPLQIRVMDHDTYSANDAIGKVYIDLN 90
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNE-- 312
++ + L V VLRA L D ++D YVK+ K+T V N NP WN
Sbjct: 23 TRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATF 78
Query: 313 EFGLVVKDPEYQALELQVYD 332
+FG V P L +V+D
Sbjct: 79 DFGSVELSP-GGKLRFEVWD 97
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 420 LVVILHEAQDV---EGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTD 476
LVV + +AQD+ +G+ ++ + F G++K+T+ K+ +P W E+ F + +P
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61
Query: 477 DKLHVEVISTSSRMGLLHPKETLGYIGINLADVV 510
L +EV + + LG + I+ V
Sbjct: 62 SNLVLEV-YVYNDRRSGRRRSFLGRVRISGTSFV 94
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLT--DDKLPSKKTTVKHRNLNPEWNEEF 314
L V VLRA L++ D + YVK+ L + + +KKT V +P +NE F
Sbjct: 17 LTVVVLRARGLRQLDH-AHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESF 70
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.97 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.9 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.88 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.84 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.84 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.84 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.83 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.83 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.82 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.82 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.82 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.82 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.82 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.82 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.81 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.81 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.81 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.8 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.8 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.8 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.8 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.8 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.8 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.79 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.79 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.79 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.79 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.79 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.79 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.78 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.78 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.78 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.78 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.78 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.78 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.78 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.78 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.78 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.78 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.77 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.77 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.77 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.77 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.77 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.77 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.77 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.76 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.76 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.76 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.76 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.76 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.76 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.76 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.76 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.75 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.75 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.75 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.75 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.75 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.75 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.75 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.75 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.74 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.74 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.74 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.74 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.74 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.74 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.74 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.73 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.73 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.73 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.73 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.73 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.73 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.73 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.73 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.73 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.73 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.72 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.72 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.72 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.72 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.72 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.72 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.72 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.71 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.71 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.71 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.71 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.71 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.71 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.7 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.7 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.7 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.7 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.7 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.7 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.7 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.7 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.69 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.69 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.69 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.69 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.69 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.69 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.69 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.69 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.69 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.69 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.69 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.68 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.68 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.68 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.68 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.68 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.68 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.68 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.68 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.68 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.67 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.67 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.67 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.67 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.67 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.67 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.67 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.66 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.66 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.66 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.66 | |
| PLN03008 | 868 | Phospholipase D delta | 99.66 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.66 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.65 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.65 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.65 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.65 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.64 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.64 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.64 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.64 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.64 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.64 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.63 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.63 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.63 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.63 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.63 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.62 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.62 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.62 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.62 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.62 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.62 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.62 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.62 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.62 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.62 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.61 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.61 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.61 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.61 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.61 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.61 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.61 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.6 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.6 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.6 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.6 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.59 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.59 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.58 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.58 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.58 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.57 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.57 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.57 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.55 | |
| PLN03008 | 868 | Phospholipase D delta | 99.54 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.54 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.54 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.53 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.53 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.53 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.52 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.51 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.51 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.51 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.48 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.47 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.46 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.44 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.42 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.4 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.35 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.34 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.32 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.3 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.26 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.25 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.23 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.19 | |
| PLN02270 | 808 | phospholipase D alpha | 99.19 | |
| PLN02270 | 808 | phospholipase D alpha | 99.17 | |
| PF10296 | 91 | DUF2404: Putative integral membrane protein conser | 99.16 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.15 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.12 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.12 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.07 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.06 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 99.01 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.01 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.93 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.92 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.92 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.89 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.86 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.76 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.75 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 98.7 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.69 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.69 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.67 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.67 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.63 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.63 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.62 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.61 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.6 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.55 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.47 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.39 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.38 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.28 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.24 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 98.09 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 98.02 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 98.0 | |
| KOG3532 | 1051 | consensus Predicted protein kinase [General functi | 97.78 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 97.76 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.71 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.69 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.58 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.47 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.43 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.05 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.94 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 96.89 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 96.88 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.79 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.65 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 96.59 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 96.08 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.05 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.87 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.8 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 95.76 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.41 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 94.98 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 94.95 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 94.94 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 94.7 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 94.48 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 93.98 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.94 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 93.79 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.53 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 92.81 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 92.66 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 92.02 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 91.69 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 91.59 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 90.86 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 90.69 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 89.12 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 89.0 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 88.81 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 86.64 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 85.88 | |
| PTZ00447 | 508 | apical membrane antigen 1-like protein; Provisiona | 83.13 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 81.27 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 80.24 |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-68 Score=564.38 Aligned_cols=495 Identities=26% Similarity=0.508 Sum_probs=415.4
Q ss_pred cchhhhhhhhccchhhhHHHHhheeeeeEeccCCCCCcccccccc--cCHHHHHHhcCCCCCCccCCCCCchHHHHHHHH
Q 046405 2 GVFGTILGFFGFGFGTVIGLVGGYFLFIYHQPTDIKDPEIQPLAE--QDSKTVELLLPEIPLWVKNPDYDRVDWLNKFIE 79 (538)
Q Consensus 2 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~ 79 (538)
|++||++|++||+++.++++++.++ ++|++..++.++.+|.+.. +..++++ .|+|++||||.+|+
T Consensus 165 ~v~Swifg~~~fs~~slffii~~~~-~vY~~~~~rv~rnird~v~~~~~~ek~~------------nd~ESveWLNtfL~ 231 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIILVTM-YVYRTCIKRVRRNIRDLVQQELSEEKLE------------NDYESVEWLNTFLQ 231 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cchhHHHHHHHHHH
Confidence 5799999999999998888776654 5676654444455665442 2233333 69999999999999
Q ss_pred HHChhHHHHHHHHHHHHHHHHHHhcCCCceeeeEEEeEEeCCCCCCeEeeeEEEec-CCCeEEEEeeeEEeC--------
Q 046405 80 TMWPFLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTLGSLPPTFQGMKVYVT-DDKELIMEPLLKWAG-------- 150 (538)
Q Consensus 80 ~~Wp~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~p~i~~v~~~~~-~~~~~~ld~~~~~~~-------- 150 (538)
++||.++|.+++.|.+++|+.|+++.|+| |+++++++||||++||||.+||.|+. +.+.+.||++++++.
T Consensus 232 KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~t~ 310 (1227)
T COG5038 232 KFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTA 310 (1227)
T ss_pred hheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhhhh
Confidence 99999999999999999999999999999 99999999999999999999999986 678899999999953
Q ss_pred -------CCceEEEEEE---cc-eeEEEEEEEEEEEEEEEEEeecCCCCCCeeeEEEEEcCCCCeEEEEEeEec-----c
Q 046405 151 -------NPNILIAAKA---FG-LKATVQVVDLQVFAFPRITLKPLVPTFPCFANIYVSLMEKPHVDFGIKLFG-----A 214 (538)
Q Consensus 151 -------~~~i~l~~~~---~~-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g-----~ 214 (538)
+++|.+.++. +| +++||.|+|+.|.|++|++.+ |++.+|++..|.++|++.|+|||.++|+| +
T Consensus 311 ~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~~g~ 389 (1227)
T COG5038 311 TSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFFGV 389 (1227)
T ss_pred HHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCCCccce
Confidence 5678888865 45 789999999999999999998 99999999999999999999999999986 5
Q ss_pred cccccccHHHHHHHHHHHHHhhhccCCCceeecccccccc-cCCceeEEEEEEEEecCCCcCC--CCCCCCcEEEEEEcC
Q 046405 215 DAMAIPGLYTYVQGLIKDQVANMYLWPKALEVQIMDPAKA-MQKPVGILNVKVLRAMKLKKKD--LIGASDPYVKLKLTD 291 (538)
Q Consensus 215 ~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~~pl~~~~~~-~~~~~G~L~V~v~~A~~L~~~d--~~g~~dpyv~v~~~~ 291 (538)
|++++|||++||+++|..++++|+++|+.+++++.+.... ...+.|+|.|+|.+|++|...+ ..+..|||+++...+
T Consensus 390 dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~ 469 (1227)
T COG5038 390 DIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD 469 (1227)
T ss_pred eEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEecc
Confidence 7899999999999999999999999999999998754333 7889999999999999999888 578999999999765
Q ss_pred CCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCceE-EEeccccCCC
Q 046405 292 DKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM-TLDLLKNMDP 370 (538)
Q Consensus 292 ~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~l~~~~~~ 370 (538)
... .||++.+++.||+|||+|++.+... ++.|.++|||.+...+|+.+|++.++|..|........ ...+.+
T Consensus 470 r~~--gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~---- 542 (1227)
T COG5038 470 RVI--GKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLR---- 542 (1227)
T ss_pred ccC--CccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeec----
Confidence 443 4999999999999999999999765 78999999999899999999999999999987754432 232222
Q ss_pred CCCCCCccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC--CCCCCeEEEEEcCee
Q 046405 371 NDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK--YHTNPSARILFRGEE 448 (538)
Q Consensus 371 ~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~~ 448 (538)
+.+..|+|+.++.|+|..++........ +. ....++|++.++++++++|... ....-|++++.+.+.
T Consensus 543 ----~~k~vGrL~yDl~ffp~~e~k~~~~~s~----e~---~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~ke 611 (1227)
T COG5038 543 ----NTKNVGRLTYDLRFFPVIEDKKELKGSV----EP---LEDSNTGILKVTLREVKALDELSSKKDNKSAELYTNAKE 611 (1227)
T ss_pred ----cCccceEEEEeeeeecccCCcccccccc----CC---cccCCcceeEEEeeccccccCccccccceeEEEEecceE
Confidence 3688999999999999977643222111 01 1223579999999999999752 233445899998876
Q ss_pred E-EeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccc-eeceEEEcCCCCC
Q 046405 449 K-KTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNK-RINEKYHLIDSKN 526 (538)
Q Consensus 449 ~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~~ 526 (538)
. .|+..+.+.+|.||+.++-.+.+. .+..+.+.+.|... .+.+|+...+|.+++... .--+||++. +++
T Consensus 612 V~st~~~k~t~~~~wn~~~~~~v~~~-~ns~~~~~~~d~~~-------g~~i~~~~~~l~~li~~t~dt~~~f~~~-~~k 682 (1227)
T COG5038 612 VYSTGKLKFTNHPSWNLQYNVLVTDR-KNSSIKVVTFDVQS-------GKVIATEGSTLPDLIDRTLDTFLVFPLR-NPK 682 (1227)
T ss_pred EeccceeeeccCCceeeecceEeccC-cceeEEEEeccccc-------CceeccccccchHhhhccccceEEEEcC-CCc
Confidence 5 668899999999999999999885 67788888888752 379999999999998754 346899997 569
Q ss_pred eEEEEEEEEEeC
Q 046405 527 GRIQIELQWRAS 538 (538)
Q Consensus 527 G~i~l~~~wkp~ 538 (538)
|+|.++.-|||+
T Consensus 683 g~I~~t~~W~Pi 694 (1227)
T COG5038 683 GRIFITNYWKPI 694 (1227)
T ss_pred ceEEEEecccee
Confidence 999999999995
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=264.78 Aligned_cols=235 Identities=26% Similarity=0.420 Sum_probs=195.0
Q ss_pred cCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeC--CCCCeEEEEEEe
Q 046405 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD--PEYQALELQVYD 332 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~d 332 (538)
.+.....|.|+|++|++|+.+|..|.+||||++++.+.+..+.+|++.++|+||.|||+|.|.+.. .....|.+.|||
T Consensus 162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~ 241 (421)
T KOG1028|consen 162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD 241 (421)
T ss_pred ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence 455678999999999999999977789999999999888778899999999999999999999653 347899999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCC
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEG 412 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 412 (538)
+|++++|++||++.++|..+........|.++....... ....|+|.++++|.|.
T Consensus 242 ~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p~--------------------- 296 (421)
T KOG1028|consen 242 FDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLPT--------------------- 296 (421)
T ss_pred cCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeecC---------------------
Confidence 999999999999999999999887778888876543221 2223899999999986
Q ss_pred CCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCCC-CeEEEEE
Q 046405 413 TPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPTD-DKLHVEV 483 (538)
Q Consensus 413 ~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V 483 (538)
.|.|+|.|.+|+||.. .+..||||++++-. +++||.+++++.||+|||+|.|.+...... ..+.++|
T Consensus 297 ----~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V 372 (421)
T KOG1028|consen 297 ----AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV 372 (421)
T ss_pred ----CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence 8999999999999986 35789999999843 345999999999999999999988743233 3799999
Q ss_pred EEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 484 ISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 484 ~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
||++. ++++++||++.+.... .+....+|....++
T Consensus 373 ~d~d~----~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~ 407 (421)
T KOG1028|consen 373 WDHDT----LGSNDLIGRCILGSDS--TGEEVRHWQEMLNS 407 (421)
T ss_pred EEccc----ccccceeeEEEecCCC--CchHHHHHHHHHhC
Confidence 99986 6788899999999875 22223455544443
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-23 Score=210.70 Aligned_cols=242 Identities=21% Similarity=0.306 Sum_probs=193.6
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHH 339 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d 339 (538)
..|.|+|.+|+||+..+..|.+||||.|.++.+.. +||.++.+++.|.|.|+|+|.+... -+.|.|.|||+| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-cccc
Confidence 46899999999999999999999999999986654 6999999999999999999999643 678999999999 9999
Q ss_pred CccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceE
Q 046405 340 DKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGL 419 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 419 (538)
+.||.+.+.-++|....+.+.|+.|.+ .++ ++...|+|++++.+.+...+ .-
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD~----dsEVQG~v~l~l~~~e~~~~-----------------------~~ 132 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VDP----DSEVQGKVHLELALTEAIQS-----------------------SG 132 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cCC----ChhhceeEEEEEEeccccCC-----------------------Cc
Confidence 999999999999998888889998854 343 37889999999999876332 11
Q ss_pred EEEEEeeeccCCC--CCCCCCeEEEEEcCee----EEeecccCCCCCcCcceEEEEecCC--------------CCCCeE
Q 046405 420 LVVILHEAQDVEG--KYHTNPSARILFRGEE----KKTKRIKKNRDPRWEEEFQFTLEEP--------------PTDDKL 479 (538)
Q Consensus 420 L~v~v~~a~~L~~--~~~~dpyv~v~~~~~~----~kT~v~~~t~nP~wne~f~f~v~~~--------------~~~~~l 479 (538)
+...+.+++++.+ .+.+|||++++..+.. ++|++.++|.+|.|+|.|.|.+... +..-.|
T Consensus 133 ~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 133 LVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred chhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 2223344445433 3569999999987654 4999999999999999999998753 012367
Q ss_pred EEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC----------CeEEEEEEEEE
Q 046405 480 HVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK----------NGRIQIELQWR 536 (538)
Q Consensus 480 ~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~----------~G~i~l~~~wk 536 (538)
.+++|++... ..++.++|++.+++........-..||.|+... -|.+++.+.+.
T Consensus 213 rv~lW~~~~~---~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 213 RVDLWNDLNL---VINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred EEeeccchhh---hhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 8888885432 345899999999999887656668999997431 37788887764
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.6e-22 Score=167.75 Aligned_cols=119 Identities=18% Similarity=0.353 Sum_probs=101.9
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCC-CCCceeeeEEEEEEeCCCCCeEEEEEEecCCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHR-NLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~ 337 (538)
.|.|+|+|++|++++..+ .|++||||++.++++.. +|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~---kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVY---ETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEE---EeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999998877 79999999999987654 8999865 79999999999999754 468999999999999
Q ss_pred CCCccEEEEEeCc-cCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 338 HHDKMGMNVIPLK-DITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 338 ~d~~lG~~~i~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
+|++||++.+++. .+..++..+.|++|.+. ......|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence 9999999999996 57777778889988541 123577999999987
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-20 Score=161.58 Aligned_cols=119 Identities=29% Similarity=0.460 Sum_probs=100.9
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeC-----CCCCeEEEEEEecCCC
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD-----PEYQALELQVYDWEKV 336 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-----~~~~~L~v~v~d~~~~ 336 (538)
++|+|++|+||+.++..|.+||||++++++.. ++|++++++.||+|||+|.|.+.. +..+.|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998654 499999999999999999999976 3467899999999999
Q ss_pred CCCCccEEEEEeCccCC--CCCCceEEEeccccCCCCCCCCCccccEEEEEEE
Q 046405 337 GHHDKMGMNVIPLKDIT--PEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVL 387 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~--~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (538)
++|++||++.++++++. .+.....|++|..... +..+..|+|+++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~----~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG----KDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC----CCccccceEEEEeC
Confidence 99999999999999987 4556678998853211 23567899999873
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-20 Score=158.77 Aligned_cols=121 Identities=30% Similarity=0.513 Sum_probs=106.2
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
+|+|+|++|++|+..+..|.+||||++++++.. .++|+++.++.||.|||+|.|.+.++ .+.|.|+|||++..++|+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~ 77 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDD 77 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCc
Confidence 489999999999999988999999999997533 35999999999999999999999765 578999999999999999
Q ss_pred ccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 341 KMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
+||++.++++++..+...+.|++|... ++.+..|+|++.++|.|
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 78 FMGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred ceEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence 999999999999988888999988431 12467899999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-20 Score=156.79 Aligned_cols=112 Identities=23% Similarity=0.420 Sum_probs=97.5
Q ss_pred eEEEEEEeeeccCCCC--CCCCCeEEEEEcCeeEEeecccC-CCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCC
Q 046405 418 GLLVVILHEAQDVEGK--YHTNPSARILFRGEEKKTKRIKK-NRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLH 494 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
|.|+|+|++|++++.. +.+||||++++++.+.+|+++++ +.||+|||.|+|.+.+. ...|.|+|+|++. ++
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~----~~ 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERA----FT 75 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCC----Cc
Confidence 7899999999988653 78999999999999999999876 79999999999999753 4679999999986 67
Q ss_pred CCCccEEEEEecc-hhcccceeceEEEcCCC----CCeEEEEEEEE
Q 046405 495 PKETLGYIGINLA-DVVNNKRINEKYHLIDS----KNGRIQIELQW 535 (538)
Q Consensus 495 ~d~~lG~~~i~L~-~l~~~~~~~~~~~L~~~----~~G~i~l~~~w 535 (538)
+|++||++.+++. .+..++..++||+|.+. ..|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 8999999999996 46666668999999873 46999999975
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-20 Score=158.89 Aligned_cols=117 Identities=27% Similarity=0.422 Sum_probs=101.1
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecC-CCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|+++. ++.||.|||+|.|.+.....+.|.++|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999988999999999998644 4788764 5789999999999998766788999999998776
Q ss_pred CCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 339 HDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
|++||++.++++++..+.....|++|.. +++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence 9999999999999877766778888743 24678999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-20 Score=155.74 Aligned_cols=115 Identities=29% Similarity=0.504 Sum_probs=103.1
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
+|+|+|++|++|+..+..|.+||||+++++++. ++|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 479999999999999988999999999997644 58999999999999999999998776789999999999989999
Q ss_pred ccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 341 KMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
+||++.++++++..+...+.|++|. ...|+|++.+.|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~-----------~~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELE-----------DGEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEcc-----------CCCcEEEEEEEec
Confidence 9999999999999988889999883 2369999998874
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-19 Score=158.56 Aligned_cols=122 Identities=31% Similarity=0.465 Sum_probs=103.4
Q ss_pred ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEec
Q 046405 254 AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDW 333 (538)
Q Consensus 254 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 333 (538)
......|.|+|+|++|++|+..+..|.+||||+++++.+. ++|++++++.||.|||+|.|.+.++..+.|.++|||+
T Consensus 9 ~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~ 85 (136)
T cd08375 9 QRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDR 85 (136)
T ss_pred cCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEEC
Confidence 3456789999999999999999988999999999997654 4999999999999999999999877678999999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCC--Cc---eEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEE--PR---EMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~--~~---~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
+..++|++||++.+++.++.... .. ..++.+ .....|+|++++.+
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence 99999999999999999998622 11 123322 25678999999976
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=154.48 Aligned_cols=116 Identities=31% Similarity=0.480 Sum_probs=101.6
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCc
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~ 341 (538)
|+|+|++|++|+..+..+.+||||++++++.....++|++++++.||.|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999975433456999999999999999999999766567899999999988 8999
Q ss_pred cEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 342 MGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 342 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
||++.++++++..+.....|++|. .+..|+|++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~----------~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLN----------PQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECC----------CCCCceEEEEEEe
Confidence 999999999999988888999873 2457999888865
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=153.38 Aligned_cols=107 Identities=28% Similarity=0.399 Sum_probs=92.1
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcC----CCCCceeeeecCCCCCceeeeEEEEEEeCC---CCCeEEEEEEec
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTD----DKLPSKKTTVKHRNLNPEWNEEFGLVVKDP---EYQALELQVYDW 333 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~----~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~ 333 (538)
.|+|+|++|++|+..+ .|.+||||++++.+ .+.++++|+++++|+||+|||+|.|.+... ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999887 49999999999842 333346899999999999999999999743 346799999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEeccccC
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNM 368 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~ 368 (538)
+..++|++||++.++++++..++....|++|.+.+
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRI 114 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcc
Confidence 98888999999999999999998888999986644
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-20 Score=152.54 Aligned_cols=113 Identities=22% Similarity=0.210 Sum_probs=96.7
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCCCCCCCeEEEEEcC----eeEEeeccc
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGKYHTNPSARILFRG----EEKKTKRIK 455 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~----~~~kT~v~~ 455 (538)
|+|++++.|.|. .+.|+|+|++|+||+..+.+||||++++.. .+++|++.+
T Consensus 1 ~~l~fsL~Y~~~-------------------------~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~r 55 (118)
T cd08677 1 PKLHYSLSYDKQ-------------------------KAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKK 55 (118)
T ss_pred CeEEEEEEEcCc-------------------------CCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceec
Confidence 579999999876 899999999999999777899999999964 356999999
Q ss_pred CCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEc
Q 046405 456 KNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHL 521 (538)
Q Consensus 456 ~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 521 (538)
+|.||+|||.|.|.+.... ....|.+.|+|.++ ++++++||++.++++++.......+|-.|
T Consensus 56 ktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Dr----fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 56 LALHTQWEEELVFPLPEEESLDGTLTLTLRCCDR----FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCC----CCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999999999987532 23479999999996 78999999999999987655556678654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-19 Score=154.47 Aligned_cols=116 Identities=28% Similarity=0.400 Sum_probs=99.1
Q ss_pred EEEEEEEEecC---CCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCC
Q 046405 261 ILNVKVLRAMK---LKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337 (538)
Q Consensus 261 ~L~V~v~~A~~---L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~ 337 (538)
.|+|+|++|+| |+.+|..|.+||||++++++++. ||++++++.||+|||+|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~---rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWV---RTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEe---EcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcc
Confidence 38999999999 88899999999999999987654 899999999999999999999776 458999999998873
Q ss_pred ------CCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEE
Q 046405 338 ------HHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVV 384 (538)
Q Consensus 338 ------~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l 384 (538)
+|++||++.++++++..+.....|++|... ++ +..+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~~---~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-NP---SGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-CC---CCccCCcEEEe
Confidence 899999999999999998888889988531 11 22556788765
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-20 Score=153.28 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=88.7
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcC-CCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEe
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTD-DKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYD 332 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~-~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 332 (538)
....|.|+|+|++|+||+ . .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+... ....|.++|||
T Consensus 10 ~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d 86 (118)
T cd08677 10 DKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC 86 (118)
T ss_pred cCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence 345799999999999998 3 36799999999964 344567999999999999999999998643 36789999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEe
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLD 363 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 363 (538)
+|+++++++||++.++++++..+.+.+.|.+
T Consensus 87 ~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 87 CDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred CCCCCCCceEEEEEEccccccCCccccchhc
Confidence 9999999999999999998866656666654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=184.43 Aligned_cols=311 Identities=23% Similarity=0.370 Sum_probs=223.7
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCc-------eee---ccccc----cc-ccCCceeEEEEEEEEecCCCcCCCCCCCCc
Q 046405 219 IPGLYTYVQGLIKDQVANMYLWPKA-------LEV---QIMDP----AK-AMQKPVGILNVKVLRAMKLKKKDLIGASDP 283 (538)
Q Consensus 219 iP~l~~~i~~~i~~~i~~~~v~P~~-------~~~---pl~~~----~~-~~~~~~G~L~V~v~~A~~L~~~d~~g~~dp 283 (538)
++....=+.+.|.......++.|.+ ++. |+... +. ....+.|.++|+|..|.+|......+++||
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP 734 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP 734 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence 3444444556777777777777765 222 55421 11 467899999999999999998778899999
Q ss_pred EEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCce---E
Q 046405 284 YVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPRE---M 360 (538)
Q Consensus 284 yv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~---~ 360 (538)
|+++.+++.. ++||-....+.||.|||..+.++..+ .+.+.++++|++..+.|..+|++.++.+++....+.. .
T Consensus 735 ya~v~~n~~~--k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 735 YATVLVNNLV--KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred ceEEEeccee--EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 9999998643 46898889999999999999999876 6789999999999999999999999999987632221 1
Q ss_pred EEeccccCCCCCCCCCccccEEEEEEEEEeecCCCC------------------------CC------------------
Q 046405 361 TLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEI------------------------PP------------------ 398 (538)
Q Consensus 361 ~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~------------------------~~------------------ 398 (538)
...-..........+....|++.+.+.|+|..-.-. .+
T Consensus 812 ~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v 891 (1227)
T COG5038 812 TIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEV 891 (1227)
T ss_pred eecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceee
Confidence 111111111111113567899999999988543100 00
Q ss_pred ----C---------C-------------------------------CC-C------CC----------------------
Q 046405 399 ----D---------M-------------------------------DG-P------NS---------------------- 405 (538)
Q Consensus 399 ----~---------~-------------------------------~~-~------~~---------------------- 405 (538)
+ . .+ . ..
T Consensus 892 ~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s 971 (1227)
T COG5038 892 EELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYS 971 (1227)
T ss_pred ccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccc
Confidence 0 0 00 0 00
Q ss_pred -----c-cCC------------------------------CC---------------C-----CCCCceEEEEEEeeecc
Q 046405 406 -----V-QKA------------------------------PE---------------G-----TPEGGGLLVVILHEAQD 429 (538)
Q Consensus 406 -----~-~~~------------------------------~~---------------~-----~~~~~g~L~v~v~~a~~ 429 (538)
. ..+ +. . .-.++|.|.|.+.+|.|
T Consensus 972 ~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~n 1051 (1227)
T COG5038 972 ETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGEN 1051 (1227)
T ss_pred eEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCC
Confidence 0 000 00 0 01146789999999999
Q ss_pred CCCC---CCCCCeEEEEEcCe-eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEe
Q 046405 430 VEGK---YHTNPSARILFRGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGIN 505 (538)
Q Consensus 430 L~~~---~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~ 505 (538)
|+.. +.+||||++.++++ .++|++++++.||+|||.|+..+.+. ..+.+.+.|+|++.. .+++.||++.++
T Consensus 1052 l~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~~----~knd~lg~~~id 1126 (1227)
T COG5038 1052 LPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDSG----EKNDLLGTAEID 1126 (1227)
T ss_pred CcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeecccC----CCcccccccccc
Confidence 9873 56999999999988 57999999999999999999999875 678899999999863 688999999999
Q ss_pred cchhcccceeceEEEcCCCC----CeEEEEEEEEEe
Q 046405 506 LADVVNNKRINEKYHLIDSK----NGRIQIELQWRA 537 (538)
Q Consensus 506 L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~wkp 537 (538)
|+.+..+...+...+|.+.. +|.++....++|
T Consensus 1127 L~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1127 LSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred HhhcCcCCccceeeeccCcceEecccEeecceecch
Confidence 99998877656666665543 466766666654
|
|
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-20 Score=158.83 Aligned_cols=100 Identities=45% Similarity=0.732 Sum_probs=92.5
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCC
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKV 336 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~ 336 (538)
...|.|+|+|.+|.||..+|..++|||||++.+++++. +|+++++++||+|||.|.|.+.++ ...|++.|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 56899999999999999999889999999999998886 899999999999999999999988 67999999999999
Q ss_pred CCCCccEEEEEeCccCCCCCCceE
Q 046405 337 GHHDKMGMNVIPLKDITPEEPREM 360 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~~~~~~~~ 360 (538)
++||+||.++|++..+.......+
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CcccccceeeeccHHHHHHhhhhc
Confidence 999999999999999987754443
|
|
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-19 Score=154.96 Aligned_cols=121 Identities=32% Similarity=0.447 Sum_probs=102.0
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC---CCeEEEEEEecCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE---YQALELQVYDWEKVG 337 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~---~~~L~v~v~d~~~~~ 337 (538)
.|+|+|++|++|+..+..|.+||||+++++++. ++|++++++.||.|||.|.|.+.++. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999998754 48999999999999999999997543 368999999998876
Q ss_pred -CCCccEEEEEeCccCC-CCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 338 -HHDKMGMNVIPLKDIT-PEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 338 -~d~~lG~~~i~l~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
+|++||++.++++++. .+.....|++|.+.. ..++.+|+|++++.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence 8999999999999998 455667888885421 1245789999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-19 Score=157.50 Aligned_cols=128 Identities=25% Similarity=0.311 Sum_probs=105.7
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCC-CCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHR-NLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHH 339 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d 339 (538)
.|+|+|++|++|+.++..|.+||||+++++++. .+|+++.+ +.||+|||+|.|.+.++..+.+.++|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 489999999999999999999999999998754 48888866 69999999999999876667999999999988899
Q ss_pred CccEEEEEeCccCCCC----CCceEEEeccccCCCC-CCCCCccccEEEEEEEEEee
Q 046405 340 DKMGMNVIPLKDITPE----EPREMTLDLLKNMDPN-DTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~----~~~~~~~~l~~~~~~~-~~~~~~~~G~l~l~l~~~p~ 391 (538)
++||++.++|+++..+ .....|++|.+..... +.+..+..|+|+|.++|.+.
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 9999999999999753 3457899986542210 11235678999999999854
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-19 Score=151.62 Aligned_cols=112 Identities=29% Similarity=0.524 Sum_probs=100.9
Q ss_pred eEEEEEEeeeccCCCC---------CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccC
Q 046405 418 GLLVVILHEAQDVEGK---------YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSS 488 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---------~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~ 488 (538)
|.|+|+|++|+||+.. +.+||||++++++..++|++++++.||+|||.|+|.+... ..+.|.++|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 6799999999999853 4689999999999889999999999999999999999764 46789999999974
Q ss_pred CCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEEEEEEEE
Q 046405 489 RMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w 535 (538)
. +|++||++.++|+++..++..++||+|.+..+|+|+|+++|
T Consensus 80 ----~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 80 ----D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred ----C-CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 3 78999999999999998777899999998889999999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-19 Score=153.51 Aligned_cols=123 Identities=25% Similarity=0.397 Sum_probs=103.8
Q ss_pred eEEEEEEEEecCCCcCCC--CCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCC
Q 046405 260 GILNVKVLRAMKLKKKDL--IGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~ 337 (538)
|+|+|+|++|++|+..+. .+.+||||++.+++.. .+|++++++.||.|||+|.|.+.++..+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 8899999999997544 48999999999999999999998766789999999999988
Q ss_pred CCCccEEEEEeCccCCC---CCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 338 HHDKMGMNVIPLKDITP---EEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
++++||++.+++.++.. ......|++|.... ...+....|+|+++++|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTR---PGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCcc---cCccccccceEEEEEEC
Confidence 99999999999999973 23456788875421 11335689999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-19 Score=151.74 Aligned_cols=122 Identities=26% Similarity=0.464 Sum_probs=104.2
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 389999999999999988899999999997544 48999999999999999999998766678999999999999999
Q ss_pred ccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEE
Q 046405 341 KMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEV 386 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
+||++.++++++..+.....|+.|.+.... ....++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRA-EEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCC-CccccCceEEEEEEe
Confidence 999999999999877667788888654322 233477889998876
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.3e-19 Score=151.45 Aligned_cols=122 Identities=30% Similarity=0.516 Sum_probs=101.1
Q ss_pred eeEEEEEEEEecCCCcCC-CCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCC
Q 046405 259 VGILNVKVLRAMKLKKKD-LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~ 337 (538)
.|.|+|+|++|++|+..+ ..+.+||||++++++. ...++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999765 3467899999999863 23469999999999999999999987 44789999999999988
Q ss_pred CCCccEEEEEeCccCCCCCCce-EEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 338 HHDKMGMNVIPLKDITPEEPRE-MTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
+|++||++.+++.++..+.... .+..+. .+++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEEeCC
Confidence 9999999999999999775543 233221 13567899999999986
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-19 Score=152.08 Aligned_cols=105 Identities=30% Similarity=0.368 Sum_probs=92.2
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEE-e--CCCCCeEEEEEEec
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVV-K--DPEYQALELQVYDW 333 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v-~--~~~~~~L~v~v~d~ 333 (538)
.|.|.|+|++|+||+..+ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 589999999999999999 8999999999997542 3457999999999999999999987 2 33467899999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+.++++++||++.++|+++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999987767778765
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=149.60 Aligned_cols=119 Identities=18% Similarity=0.303 Sum_probs=100.7
Q ss_pred EEEEEEEecCCCcCC-CCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 262 LNVKVLRAMKLKKKD-LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 262 L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
|.|+|++|+||+..+ ..|.+||||+++++++. .++|+++++|.||.|||+|.|.+.+. ...|.|.|||++.+++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 789999999999874 45789999999996543 36899999999999999999999754 478999999999999999
Q ss_pred ccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 341 KMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
+||++.++++++..+...+.|++|.+.. ..++..|+|++++.|
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD-----ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC-----CCCcccEEEEEEEEC
Confidence 9999999999999887888999986431 124468999998764
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=153.00 Aligned_cols=110 Identities=27% Similarity=0.398 Sum_probs=95.3
Q ss_pred eeEEEEEEEEecCCCcCC-CCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEE-ecC
Q 046405 259 VGILNVKVLRAMKLKKKD-LIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVY-DWE 334 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~-d~~ 334 (538)
.|.|.|+|++|+||...+ ..|.+||||++++.+.. ..++||+++++|+||+|||+|.|.+. .....|.++|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 589999999999999864 56889999999996543 34679999999999999999999997 56789999999 678
Q ss_pred CCCCCCccEEEEEeCccCCCCCCceEEEeccccCC
Q 046405 335 KVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMD 369 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~ 369 (538)
.++++++||++.++|+++..+.....|++|.+...
T Consensus 107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred CCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 88899999999999999987777788998865443
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=149.84 Aligned_cols=122 Identities=22% Similarity=0.411 Sum_probs=103.2
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCc
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~ 341 (538)
|.|+|++|+||+. ..|.+||||+++++.. ...++|++++++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP-PQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC-CcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 6799999999987 6689999999999742 234699999999999999999999854 36789999999999999999
Q ss_pred cEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 342 MGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 342 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
||++.++++++..+.....|++|..... .+....|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~----~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY----EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC----CCCCcceEEEEEEEEecc
Confidence 9999999999998877778888754211 235679999999999865
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.7e-19 Score=151.66 Aligned_cols=111 Identities=23% Similarity=0.350 Sum_probs=95.4
Q ss_pred EEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCC----CCCCeEEEEEEEccCCCCC
Q 046405 420 LVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEP----PTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~~l~v~V~d~~~~~g~ 492 (538)
++|+|++|+||+.. +.+||||++++++.+++|++++++.||+|||.|+|.+... +....|.++|||++.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~---- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL---- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc----
Confidence 47999999999863 5799999999999999999999999999999999999762 245689999999975
Q ss_pred CCCCCccEEEEEecchhc--ccceeceEEEcCCC------CCeEEEEEEE
Q 046405 493 LHPKETLGYIGINLADVV--NNKRINEKYHLIDS------KNGRIQIELQ 534 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~--~~~~~~~~~~L~~~------~~G~i~l~~~ 534 (538)
+++|++||++.++|+++. .+....+||+|.+. ..|+|++++|
T Consensus 77 ~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 77 LGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred cCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 568999999999999998 44567899999753 2599999875
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=148.68 Aligned_cols=123 Identities=21% Similarity=0.316 Sum_probs=102.0
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
...|+|+|++|+||+.. +.+||||++++++.. ..+|+++ ++.||.|||+|.|.+..+....+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 45799999999999875 468999999997543 2478875 58999999999998765544689999999999999
Q ss_pred CCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 339 HDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
|++||++.+++.++..+...+.|++|.+.. ....+..|+|+++++|.+.
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEcc
Confidence 999999999999999888888999986531 1235678999999999863
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=150.08 Aligned_cols=115 Identities=30% Similarity=0.485 Sum_probs=100.5
Q ss_pred eEEEEEEEEecCCCcCCC------CCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEec
Q 046405 260 GILNVKVLRAMKLKKKDL------IGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDW 333 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~------~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 333 (538)
|+|+|+|++|+||+..+. .|.+||||+++++++ .++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998874 368999999999863 35999999999999999999999876678999999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
+.. +|++||++.++++++..+.....|++|. ....|+|+++++|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------~~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLE----------DVKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECc----------CCCCceEEEEEeC
Confidence 987 8999999999999998877778899873 2367999998865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-18 Score=147.87 Aligned_cols=123 Identities=24% Similarity=0.341 Sum_probs=101.6
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCC
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~ 337 (538)
|.++|+|+|++|++|+..+..|.+||||++.++++. .+|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999998764 4999999999999999999988765 67899999999876
Q ss_pred CCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 338 HHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
.|++||++.+++.++..... .+++|.+.. ...+++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~--~~~~l~~~~---~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTL--RTLPLRKRG---RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCCcCc--eEEEcccCC---CCCCCCCCCEEEEEEEEcc
Confidence 58999999999998755444 444543221 1234788999999998765
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=149.68 Aligned_cols=115 Identities=17% Similarity=0.270 Sum_probs=98.8
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC----CCCCCCeEEEEEcC-----eeE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG----KYHTNPSARILFRG-----EEK 449 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~----~~~~dpyv~v~~~~-----~~~ 449 (538)
+|+|++++.|.+. .+.|.|+|++|+||+. .+.+||||++++.. .++
T Consensus 1 ~G~i~~sl~y~~~-------------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~ 55 (125)
T cd04029 1 SGEILFSLSYDYK-------------------------TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKR 55 (125)
T ss_pred CcEEEEEEEEECC-------------------------CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccce
Confidence 4999999999764 7889999999999975 25799999999952 346
Q ss_pred EeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
||++++++.||+|||.|.|.+.... ....|.|+|||++. ++++++||++.++|.++..+...+.||+|.
T Consensus 56 kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~----~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 56 KTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR----FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 9999999999999999999986532 24579999999975 578999999999999998877789999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-18 Score=147.12 Aligned_cols=115 Identities=26% Similarity=0.405 Sum_probs=96.9
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
.|+|+|++|+||+.. .+||||+++++++. .+|++++++.||+|||+|.|.+.++....|.++|||++.. +++
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 389999999999877 68999999998643 5999999999999999999998776678999999999976 799
Q ss_pred ccEEEEEeCccCCCCC-----CceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 341 KMGMNVIPLKDITPEE-----PREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
+||++.++++++.... ....|++|.... +.+.+|+|+++++|-
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~------~~~~~G~i~l~~~~~ 120 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK------GGRVGGELMLAVWFG 120 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC------CCccceEEEEEEEec
Confidence 9999999999997543 245788875421 246789999999883
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=148.28 Aligned_cols=112 Identities=27% Similarity=0.375 Sum_probs=95.9
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC--CCCCCCeEEEEEcC-----eeEEe
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG--KYHTNPSARILFRG-----EEKKT 451 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~--~~~~dpyv~v~~~~-----~~~kT 451 (538)
.|+|++++.|. .+.|.|.|++|+||+. .+.+||||++++.. .++||
T Consensus 1 ~G~l~~~l~y~---------------------------~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT 53 (122)
T cd08381 1 GGQVKLSISYK---------------------------NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKT 53 (122)
T ss_pred CCeEEEEEEEe---------------------------CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeC
Confidence 38999999996 4779999999999976 45799999999963 35699
Q ss_pred ecccCCCCCcCcceEEEEe-cC-CCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEc
Q 046405 452 KRIKKNRDPRWEEEFQFTL-EE-PPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHL 521 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v-~~-~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 521 (538)
++++++.||+|||+|+|.+ .. ......|.++|||++. ++++++||++.++|+++..++..+.||+|
T Consensus 54 ~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 54 KVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS----LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC----CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999987 21 1234689999999985 57899999999999999887777999997
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=149.76 Aligned_cols=115 Identities=22% Similarity=0.289 Sum_probs=98.1
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC----CCCCCeEEEEEcC-----eeE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK----YHTNPSARILFRG-----EEK 449 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~-----~~~ 449 (538)
+|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~y~~~-------------------------~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~ 55 (125)
T cd08393 1 QGSVQFALDYDPK-------------------------LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKR 55 (125)
T ss_pred CcEEEEEEEEECC-------------------------CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccc
Confidence 5999999999864 67899999999999862 5799999999952 346
Q ss_pred EeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
||++++++.||+|||.|.|.+.... ....|.++|||++. ++++++||++.++|.++..++....||+|+
T Consensus 56 kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~----~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 56 KTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS----LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred cCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC----CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999999999999999999986422 23589999999975 678999999999999997766778999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=147.74 Aligned_cols=112 Identities=24% Similarity=0.456 Sum_probs=97.3
Q ss_pred eEEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccC-CCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 418 GLLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKK-NRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 418 g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
|.|+|+|++|+||+. .+.+||||++++++..++|+++++ +.||+|||.|.|.+... ..+.|.|+|||++. .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDK----R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC----C
Confidence 679999999999986 357999999999998889998765 79999999999999864 45789999999875 3
Q ss_pred CCCCccEEEEEecchhcccceeceEEEcCCCC--CeEEEEEEEE
Q 046405 494 HPKETLGYIGINLADVVNNKRINEKYHLIDSK--NGRIQIELQW 535 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~--~G~i~l~~~w 535 (538)
+ |++||++.++++++..+....+||+|.+.+ .|+|+|+++|
T Consensus 76 ~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 76 K-PDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred C-CcceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 3 899999999999998776679999998653 6999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=149.84 Aligned_cols=123 Identities=35% Similarity=0.566 Sum_probs=101.9
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC----CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK----LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKV 336 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~ 336 (538)
.|+|+|++|++|+..+..|.+||||++++.+.. ....+|++++++.||.|||+|.|.+... ...|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 489999999999999988999999999997541 2245899999999999999999998654 57899999999999
Q ss_pred CCCCccEEEEEeCccCCCCCC------ceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 337 GHHDKMGMNVIPLKDITPEEP------REMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~~~~~------~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
++|++||++.+++.++..... ...|++|.+.. ..++..|+|++++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRS-----SKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecC-----CCCcceeEEEEEEeeC
Confidence 999999999999999986543 34677765321 1256799999999883
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=146.50 Aligned_cols=115 Identities=19% Similarity=0.318 Sum_probs=98.6
Q ss_pred ceEEEEEEeeeccCCCCCCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 417 GGLLVVILHEAQDVEGKYHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
...|+|+|++|+||+..+.+||||++++++.. .+|++ +++.||.|||.|.|.+... ....+.|.|+|++. +++
T Consensus 3 ~~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~----~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAK----RSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCC-CcCEEEEEEEECCC----CCC
Confidence 45799999999999988889999999998755 58887 5689999999999987543 44679999999875 578
Q ss_pred CCccEEEEEecchhcccceeceEEEcCCCC------CeEEEEEEEEEe
Q 046405 496 KETLGYIGINLADVVNNKRINEKYHLIDSK------NGRIQIELQWRA 537 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~------~G~i~l~~~wkp 537 (538)
|++||++.++|+++..+...+.||+|.+.+ .|+|+|+++|++
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 999999999999998877789999997642 499999999986
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-18 Score=152.32 Aligned_cols=123 Identities=28% Similarity=0.449 Sum_probs=103.1
Q ss_pred eeEEEEEEEEecCCCcCC------------------------------CCCCCCcEEEEEEcCCCCCceeeeecCCCCCc
Q 046405 259 VGILNVKVLRAMKLKKKD------------------------------LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNP 308 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP 308 (538)
.|+|.|+|.+|++|+++| ..|.+||||++++++... .+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCCC
Confidence 599999999999999987 246789999999986543 589999999999
Q ss_pred eeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 309 EWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 309 ~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
.|||+|.|.+... .+.|.|+|||+|..+ +++||++.++++++..+...+.|++|... ..+..+..|+|++++.|
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~----~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS----NGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC----CCCCCCCCCEEEEEEEE
Confidence 9999999998765 568999999999775 68999999999999988888899998542 11124557899999988
Q ss_pred E
Q 046405 389 K 389 (538)
Q Consensus 389 ~ 389 (538)
.
T Consensus 158 ~ 158 (158)
T cd04015 158 T 158 (158)
T ss_pred C
Confidence 3
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-18 Score=149.77 Aligned_cols=116 Identities=25% Similarity=0.334 Sum_probs=98.5
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC----CCCCCeEEEEEcC-----
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK----YHTNPSARILFRG----- 446 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~----- 446 (538)
....|+|++++.|. .+.|.|+|++|+||... +.+||||++++..
T Consensus 14 ~~~~G~l~lsl~y~---------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~ 66 (146)
T cd04028 14 SPSMGDIQLGLYDK---------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCI 66 (146)
T ss_pred CCCcceEEEEEEeC---------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccc
Confidence 45689999999983 57899999999999752 4689999999953
Q ss_pred eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEE-ccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 447 EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVIS-TSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 447 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d-~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
.++||++++++.||+|||.|+|.+. ..+..|.++||+ .+. ++++++||.+.|+|+++..+.....||+|.++
T Consensus 67 ~k~KT~v~kktlnPvfNE~F~f~v~--l~~~~L~v~V~~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 67 AKKKTKIARKTLDPLYQQQLVFDVS--PTGKTLQVIVWGDYGR----MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred cceeceecCCCCCCccCCeEEEEEc--CCCCEEEEEEEeCCCC----CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 2569999999999999999999998 356789999995 442 57889999999999998766677899999865
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=149.12 Aligned_cols=108 Identities=29% Similarity=0.376 Sum_probs=93.6
Q ss_pred CceeEEEEEEEEecCCCcCCCC-CCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeC--CCCCeEEEEEE
Q 046405 257 KPVGILNVKVLRAMKLKKKDLI-GASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKD--PEYQALELQVY 331 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~ 331 (538)
...+.|.|+|++|+||+.++.. |.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.++||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 4468999999999999999875 899999999996543 345699999999999999999999863 23568999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|++.++++++||++.++|.++...+....|++|
T Consensus 92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred eCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 999999999999999999999877777778875
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-18 Score=144.31 Aligned_cols=112 Identities=21% Similarity=0.358 Sum_probs=99.9
Q ss_pred EEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 419 LLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
+++|+|++|+||+.. +.+||||++++++..++|++++++.||.|||.|+|.+... ....|.++|||++. +++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~----~~~ 75 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDT----GKK 75 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCC----CCC
Confidence 478999999999873 5789999999999899999999999999999999999764 46789999999985 568
Q ss_pred CCccEEEEEecchhcccceeceEEEcCCCCCeEEEEEEEEE
Q 046405 496 KETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWR 536 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~wk 536 (538)
|++||++.++|+++..+...+.||+|.+. +|+|++.+.|.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 76 DEFIGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred CCeEEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 99999999999999887778999999865 79999998874
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.6e-18 Score=144.61 Aligned_cols=118 Identities=34% Similarity=0.529 Sum_probs=100.1
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHH 339 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d 339 (538)
|.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. .+.+.++|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999997654 4899999999999999999998654 57899999999988899
Q ss_pred CccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 340 DKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
++||++.+++.++..+. ..|+.|... ....+..|+|.+++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~--~~~~~l~~~-----~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGE--RKWYALKDK-----KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCC--ceEEECccc-----CCCCceeeEEEEEEEe
Confidence 99999999999997664 356666432 1124579999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=147.88 Aligned_cols=109 Identities=30% Similarity=0.437 Sum_probs=94.6
Q ss_pred CCceeEEEEEEEEecCCCcCCC-CCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDL-IGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 330 (538)
....|.|.|+|++|+||+..+. .|.+||||++++.+.. ..++||++++++.||.|||+|.|.+... ....|.|+|
T Consensus 11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4567899999999999998765 4789999999996543 3457999999999999999999998643 356899999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
||++..+++++||++.+++.++...+....|++|
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 91 WHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 9999999999999999999999988888888876
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-18 Score=147.12 Aligned_cols=113 Identities=23% Similarity=0.407 Sum_probs=98.9
Q ss_pred eEEEEEEeeeccCCC-----CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 418 GLLVVILHEAQDVEG-----KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 418 g~L~v~v~~a~~L~~-----~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
|.|+|+|++|+||+. .+.+||||++++++.+++|++++++.||.|||.|+|.+... ..+.|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~---- 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDR---- 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCC----
Confidence 689999999999975 35789999999999999999999999999999999999863 46799999999985
Q ss_pred CCCCCccEEEEEecchhcc---cceeceEEEcCCC-------CCeEEEEEEEE
Q 046405 493 LHPKETLGYIGINLADVVN---NKRINEKYHLIDS-------KNGRIQIELQW 535 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~---~~~~~~~~~L~~~-------~~G~i~l~~~w 535 (538)
++.+++||++.++|.++.. .....+||+|.+. .+|+|+|+++|
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 5678999999999999983 3346899999865 37999999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.8e-18 Score=144.28 Aligned_cols=112 Identities=23% Similarity=0.377 Sum_probs=99.2
Q ss_pred EEEEEeeeccCCC---CCCCCCeEEEEEcC-eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 420 LVVILHEAQDVEG---KYHTNPSARILFRG-EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~---~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|+|+|++|++|+. .+.+||||++++++ ..++|++++++.||+|||.|.|.+.+. .+.+.++|||++. +++
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~----~~~ 75 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDR----GLT 75 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCC----CCC
Confidence 7899999999986 35899999999987 467999999999999999999998763 4789999999985 568
Q ss_pred CCccEEEEEecchhcccceeceEEEcCCCC----CeEEEEEEEEEe
Q 046405 496 KETLGYIGINLADVVNNKRINEKYHLIDSK----NGRIQIELQWRA 537 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~wkp 537 (538)
|++||++.++|+++..+...+.|++|.+.+ .|+|++.+.+.|
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 76 DDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CcceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 999999999999999887788999998654 599999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-18 Score=147.67 Aligned_cols=109 Identities=30% Similarity=0.616 Sum_probs=96.1
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEec
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDW 333 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~ 333 (538)
....|.|.|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.++|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~ 91 (124)
T cd08387 12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF 91 (124)
T ss_pred CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence 445789999999999999999889999999999965444457999999999999999999998643 256899999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+.+++|++||++.++++++..++....|++|
T Consensus 92 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 92 DQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred CCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 9999999999999999999988788888876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-18 Score=145.17 Aligned_cols=95 Identities=31% Similarity=0.514 Sum_probs=84.8
Q ss_pred eEEEEEEEEecCCCcCCCC-CCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC---CCCeEEEEEEecCC
Q 046405 260 GILNVKVLRAMKLKKKDLI-GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP---EYQALELQVYDWEK 335 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~~~ 335 (538)
|+|+|+|++|++|+..+.. |.+||||++++.+.....++|++++++.||.|||+|.|.+... ..+.|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7999999999999999987 8999999999965444457999999999999999999988654 35789999999999
Q ss_pred CCCCCccEEEEEeCccCCC
Q 046405 336 VGHHDKMGMNVIPLKDITP 354 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~ 354 (538)
.++|++||++.++++++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999984
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-18 Score=144.86 Aligned_cols=111 Identities=21% Similarity=0.401 Sum_probs=93.0
Q ss_pred EEEEEEeeecc---CCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCC--
Q 046405 419 LLVVILHEAQD---VEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRM-- 490 (538)
Q Consensus 419 ~L~v~v~~a~~---L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~-- 490 (538)
+|+|+|++|++ |+. .|.+||||++++++++.||++++++.||+|||.|.|.+.+. ...|.|+|||++...
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 48999999999 654 36899999999999999999999999999999999999763 358999999997510
Q ss_pred CCCCCCCccEEEEEecchhcccceeceEEEcCCC------CCeEEEE
Q 046405 491 GLLHPKETLGYIGINLADVVNNKRINEKYHLIDS------KNGRIQI 531 (538)
Q Consensus 491 g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l 531 (538)
+.+.+|++||++.++|+++..+...+.||+|... +.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 0124799999999999999988888999999843 3577664
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-18 Score=148.92 Aligned_cols=124 Identities=24% Similarity=0.369 Sum_probs=97.7
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEe---------------CCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVK---------------DPEY 323 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~---------------~~~~ 323 (538)
.|+|+|++|+||+. ..|.+||||++++.+. +...++|+++++|.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 4689999999999763 223468999999999999999999985 1123
Q ss_pred CeEEEEEEecCCCCCCCccEEEEEeCccCCCC-CCceEEEeccccCCCCC-----CCCCccccEEEEEE
Q 046405 324 QALELQVYDWEKVGHHDKMGMNVIPLKDITPE-EPREMTLDLLKNMDPND-----TRNEKSRGQVVVEV 386 (538)
Q Consensus 324 ~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~-----~~~~~~~G~l~l~l 386 (538)
..|.++|||++..++|++||++.+++.++..+ .....|++|.+..+..+ ..+....|.|++.+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 57999999999888999999999999999987 56778998865433321 12344567777654
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.76 E-value=7e-18 Score=144.78 Aligned_cols=111 Identities=21% Similarity=0.389 Sum_probs=96.9
Q ss_pred EEEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCc
Q 046405 419 LLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKET 498 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~ 498 (538)
.|+|+|++|+||+.. .+||||++++++...+|++++++.||+|||.|+|.+... ....|.++|||++. + ++++
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~----~-~~~~ 73 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDK----A-KDDF 73 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCC----C-cCce
Confidence 488999999999987 899999999999888999999999999999999998763 56789999999974 3 6899
Q ss_pred cEEEEEecchhcccc-----eeceEEEcCCCC----CeEEEEEEEEE
Q 046405 499 LGYIGINLADVVNNK-----RINEKYHLIDSK----NGRIQIELQWR 536 (538)
Q Consensus 499 lG~~~i~L~~l~~~~-----~~~~~~~L~~~~----~G~i~l~~~wk 536 (538)
||++.++|+++..+. ..++||+|.+.+ +|+|+|+++|-
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 999999999987532 256999998754 59999999873
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.7e-18 Score=149.31 Aligned_cols=114 Identities=25% Similarity=0.326 Sum_probs=97.0
Q ss_pred EEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccC-CCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCC
Q 046405 419 LLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKK-NRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLH 494 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
.|+|+|++|+||+. .+.+||||+++++++..+|+++.+ +.||+|||.|+|.+.++ ..+.+.++|+|++. ++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~----~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVG----PN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecC----CC
Confidence 48999999999976 368999999999998899999876 69999999999999763 45789999999874 46
Q ss_pred CCCccEEEEEecchhccc----ceeceEEEcCCCC-----------CeEEEEEEEEEe
Q 046405 495 PKETLGYIGINLADVVNN----KRINEKYHLIDSK-----------NGRIQIELQWRA 537 (538)
Q Consensus 495 ~d~~lG~~~i~L~~l~~~----~~~~~~~~L~~~~-----------~G~i~l~~~wkp 537 (538)
+|++||++.++|+++..+ ...++||+|.+.+ +|+|+|++++-+
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 789999999999998753 3468999998653 399999998753
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.6e-18 Score=145.70 Aligned_cols=109 Identities=33% Similarity=0.477 Sum_probs=95.8
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEec
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDW 333 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~ 333 (538)
....|.|+|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 345689999999999999999889999999999976554567999999999999999999998642 356899999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+.+++|++||++.++++++..+.....|+++
T Consensus 92 d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 92 DRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 9999999999999999999888778888876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.3e-18 Score=145.46 Aligned_cols=115 Identities=19% Similarity=0.246 Sum_probs=96.9
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC----CCCCCeEEEEEcC-----eeE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK----YHTNPSARILFRG-----EEK 449 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~-----~~~ 449 (538)
.|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.. .++
T Consensus 1 ~G~i~~sl~Y~~~-------------------------~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~ 55 (128)
T cd08392 1 TGEIEFALHYNFR-------------------------TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKR 55 (128)
T ss_pred CcEEEEEEEEeCC-------------------------CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCccccee
Confidence 4999999999865 68999999999999752 6789999999952 356
Q ss_pred EeecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhccc---ceeceEEEcC
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN---KRINEKYHLI 522 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~ 522 (538)
||++++++.||+|||.|.|.+..... ...|.+.|||.+. ++++++||++.|+|+++.-. ....+||+|.
T Consensus 56 kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~----~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 56 KTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT----LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred ecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC----CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 99999999999999999999865322 3589999999875 57899999999999998543 3678999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-17 Score=144.44 Aligned_cols=115 Identities=24% Similarity=0.495 Sum_probs=101.0
Q ss_pred CceEEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 416 GGGLLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
..|.|+|+|++|++|+. .+.+||||++++++..++|++++++.||.|||.|+|.+.+. ..+.|.++|||++.
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~---- 87 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDF---- 87 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCC----
Confidence 46999999999999976 36899999999999999999999999999999999999764 45789999999985
Q ss_pred CCCCCccEEEEEecchhcc-----cceeceEEEcCCCCCeEEEEEEEE
Q 046405 493 LHPKETLGYIGINLADVVN-----NKRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~-----~~~~~~~~~L~~~~~G~i~l~~~w 535 (538)
+++|++||++.++|.++.. +..+.+|..|.+...|+|+|++.+
T Consensus 88 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 88 FSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 5689999999999999986 334567888877778999999876
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.6e-18 Score=143.62 Aligned_cols=102 Identities=24% Similarity=0.342 Sum_probs=86.0
Q ss_pred ceEEEEEEeeeccCCCC--CCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCC
Q 046405 417 GGLLVVILHEAQDVEGK--YHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSR 489 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~ 489 (538)
.+.|.|+|++|+||+.. +.+||||++++.. .++||++++++.||+|||.|.|.+........+.+.|||++..
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 57899999999999763 5789999999964 2459999999999999999999987543445799999998752
Q ss_pred CCCCCCCCccEEEEEecchhcccceeceEEEc
Q 046405 490 MGLLHPKETLGYIGINLADVVNNKRINEKYHL 521 (538)
Q Consensus 490 ~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 521 (538)
..++++||.+.++|.++..++..++||.|
T Consensus 91 ---~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 91 ---SRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred ---cCCCEEEEEEEecHHHhccCccccceEeC
Confidence 23578999999999999877778999986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=144.63 Aligned_cols=116 Identities=30% Similarity=0.494 Sum_probs=100.7
Q ss_pred eeEEEEEEEEecCCCcCCCC----------CCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEE
Q 046405 259 VGILNVKVLRAMKLKKKDLI----------GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALEL 328 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v 328 (538)
.|.|+|+|++|++|+..+.. |.+||||+++++++.. .+|++++++.||.|||+|.|.+.+ ...|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVHN--GRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcCC--CCEEEE
Confidence 48999999999999988752 5789999999986543 489999999999999999999963 578999
Q ss_pred EEEecCCCCCCCccEEEEEeCccCCC--CCCceEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 329 QVYDWEKVGHHDKMGMNVIPLKDITP--EEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
+|||++..+++++||++.++|.++.. +...+.|++|. ..|+|++.++|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEEEec
Confidence 99999988899999999999999987 55678899872 4699999999874
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=142.72 Aligned_cols=119 Identities=34% Similarity=0.469 Sum_probs=100.7
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
.|+|+|++|++|+..+..+.+||||++...+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998654334569999999999999999999997765678999999999888999
Q ss_pred ccEEEEEeCccCCC---CCCceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 341 KMGMNVIPLKDITP---EEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 341 ~lG~~~i~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
+||++.+++.++.. +.....|+++. ..|++++.+.|...
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEeee
Confidence 99999999987643 33567888862 26899999988643
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=144.98 Aligned_cols=114 Identities=24% Similarity=0.386 Sum_probs=97.1
Q ss_pred EEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCC--CCeEEEEEEEccCCCCCC
Q 046405 419 LLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPT--DDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~l~v~V~d~~~~~g~~ 493 (538)
.|+|+|++|+||+. .+.+||||++++++++++|++++++.||+|||.|.|.+..... ...|.|+|||++. +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~----~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR----S 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC----C
Confidence 48899999999975 3679999999999999999999999999999999999975321 3579999999874 4
Q ss_pred C-CCCccEEEEEecchhc-ccceeceEEEcCCC-----CCeEEEEEEEEE
Q 046405 494 H-PKETLGYIGINLADVV-NNKRINEKYHLIDS-----KNGRIQIELQWR 536 (538)
Q Consensus 494 ~-~d~~lG~~~i~L~~l~-~~~~~~~~~~L~~~-----~~G~i~l~~~wk 536 (538)
. +|++||++.++++++. .+....+||+|... .+|+|+|++++.
T Consensus 77 ~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 77 GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred cCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 4 7899999999999998 45567899999864 379999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=144.82 Aligned_cols=109 Identities=26% Similarity=0.364 Sum_probs=91.3
Q ss_pred CCceeEEEEEEEEecCCCcCCCC-CCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEE-EeC--CCCCeEEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLI-GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLV-VKD--PEYQALELQVY 331 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~~L~v~v~ 331 (538)
....+.|+|+|++|+||+..+.. |.+||||++++.+....+.||++++++.||.|||+|.|. +.. .....|.++||
T Consensus 12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 34568999999999999998876 889999999997655556799999999999999999994 431 22457999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCC--CCceEEEec
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPE--EPREMTLDL 364 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~l 364 (538)
|+|.+++|++||++.++|+++... +....|+++
T Consensus 92 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 92 SFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred EcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 999999999999999999999755 455677765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=141.99 Aligned_cols=111 Identities=19% Similarity=0.387 Sum_probs=97.0
Q ss_pred EEEEEEeeeccCCCC---CCCCCeEEEEEcC---eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 419 LLVVILHEAQDVEGK---YHTNPSARILFRG---EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
.|+|+|++|++|+.. +.+||||++++++ ..++|++++++.||+|||.|+|.+... ....|.|+|||++.
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~---- 75 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDY---- 75 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCC----
Confidence 378999999999863 5799999999963 457999999999999999999999764 45679999999975
Q ss_pred CCCCCccEEEEEecchhcccceeceEEEcCCCCCeEEEEEEEE
Q 046405 493 LHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w 535 (538)
+ +|++||++.++++++..+.....||+|.+.+.|++++++.+
T Consensus 76 ~-~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 76 V-MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred C-CCcccEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 4 78999999999999988888899999998888999988865
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=141.95 Aligned_cols=118 Identities=23% Similarity=0.452 Sum_probs=98.8
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCc
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~ 341 (538)
|.|+|++|++|+.++..|.+||||++.+++.. ..+|++++++.||.|||.|.|.+... .+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999997543 35999999999999999999998654 4789999999999999999
Q ss_pred cEEEEEeCccCCCC-CCceEEEeccccCCCCCCCCCccccEEEEEEE
Q 046405 342 MGMNVIPLKDITPE-EPREMTLDLLKNMDPNDTRNEKSRGQVVVEVL 387 (538)
Q Consensus 342 lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 387 (538)
||++.++++++..+ ...+.|++|.+. + ......|+|++.+.
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-~----~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV-D----PDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee-C----CCCccccEEEEEEE
Confidence 99999999988754 236788887432 1 12457899998864
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-17 Score=143.58 Aligned_cols=120 Identities=20% Similarity=0.370 Sum_probs=99.0
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC---------CCCeEEEEEE
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP---------EYQALELQVY 331 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------~~~~L~v~v~ 331 (538)
.|+|+|++|++|+.+|..|.+||||+++++++. ++|+++++|.||.|||+|.|.+... ....|.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999999999999999999997654 4899999999999999999975432 1257999999
Q ss_pred ecCCCCCCCccEEEEE-eCccCCC---CCCceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 332 DWEKVGHHDKMGMNVI-PLKDITP---EEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i-~l~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
|++..++|++||++.+ ++..+.. ......|++|.+ .+...|+|.+++++.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence 9999999999999986 4444443 356678888853 24579999999999875
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=143.49 Aligned_cols=115 Identities=21% Similarity=0.349 Sum_probs=99.2
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEc---CeeEEee
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFR---GEEKKTK 452 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~---~~~~kT~ 452 (538)
+|+|++++.|.|. .+.|.|+|++|+||+. .+.+||||++++. ...++|+
T Consensus 2 ~G~l~~sl~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~ 56 (124)
T cd08387 2 RGELHFSLEYDKD-------------------------MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSK 56 (124)
T ss_pred CCEEEEEEEECCC-------------------------CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCc
Confidence 6999999999864 6899999999999986 3579999999994 3357999
Q ss_pred cccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 453 RIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
+++++.||+|||.|.|.+.... ....|.++|||++. ++++++||++.++|+++..++..+.||+|+
T Consensus 57 v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~----~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 57 IHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ----FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred eEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC----CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999999999999999986531 23589999999975 578999999999999998777889999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.4e-18 Score=140.68 Aligned_cols=94 Identities=18% Similarity=0.321 Sum_probs=82.1
Q ss_pred eEEEEEEEEecCCCcCCCC----CCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC-CCeEEEEEEecC
Q 046405 260 GILNVKVLRAMKLKKKDLI----GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE-YQALELQVYDWE 334 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~----g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~~ 334 (538)
|+|.|+|++|++|+..+.. +.+||||+++++++. +||++++++.||+|||.|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7999999999999987632 358999999997543 48999999999999999999986543 458999999999
Q ss_pred CCCCCCccEEEEEeCccCCCCC
Q 046405 335 KVGHHDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999998764
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-17 Score=142.00 Aligned_cols=113 Identities=19% Similarity=0.318 Sum_probs=97.9
Q ss_pred EEEEEeeeccCCC-CCCCCCeEEEEEcC--eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCC
Q 046405 420 LVVILHEAQDVEG-KYHTNPSARILFRG--EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPK 496 (538)
Q Consensus 420 L~v~v~~a~~L~~-~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d 496 (538)
|.|+|++|+||+. .+.+||||++++++ .+++|++++++.||+|||.|.|.+.. ....|.|+|||++. +++|
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~----~~~~ 74 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGK----KSDS 74 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCC----CCCC
Confidence 5789999999976 35799999999974 56799999999999999999999864 35789999999985 4679
Q ss_pred CccEEEEEecchhcccceeceEEEcCCC------CCeEEEEEEEEEeC
Q 046405 497 ETLGYIGINLADVVNNKRINEKYHLIDS------KNGRIQIELQWRAS 538 (538)
Q Consensus 497 ~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~wkp~ 538 (538)
++||++.++++++.......+||+|.+. ..|+|+++++|.+.
T Consensus 75 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 75 KFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred ceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 9999999999999987777899999854 37999999999763
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-17 Score=143.62 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=91.5
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC---CCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK---LPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 330 (538)
....+.|.|+|++|+||+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++|
T Consensus 10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 34568999999999999998888899999999997654 2467999999999999999999998643 367999999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCC-CceEEEe
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEE-PREMTLD 363 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~ 363 (538)
||++..+++++||++.++|+++.... ....|++
T Consensus 90 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 90 CSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred EeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 99999999999999999999996553 3444554
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=137.94 Aligned_cols=99 Identities=23% Similarity=0.484 Sum_probs=87.5
Q ss_pred EEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 419 LLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
.|.|+|++|+||+. .+.+||||+++++++.++|++++++.||+|||.|+|.+.++ ..+.|.|+|+|++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~------- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT------- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC-------
Confidence 37899999999986 36899999999999999999999999999999999999874 56789999999862
Q ss_pred CCccEEEEEecchhcccc--eeceEEEcCCCC
Q 046405 496 KETLGYIGINLADVVNNK--RINEKYHLIDSK 525 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~~ 525 (538)
+++||++.++|.++..+. ..++||+|.+.+
T Consensus 73 ~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 73 GKSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CCccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 789999999999998754 579999998653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=143.72 Aligned_cols=109 Identities=28% Similarity=0.357 Sum_probs=91.2
Q ss_pred CCceeEEEEEEEEecCCCcCCCC-CCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLI-GASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 330 (538)
....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 ~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 11 NFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred eCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 34568999999999999998875 899999999997554 3456999999999999999999998643 256899999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCC---CceEEEec
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEE---PREMTLDL 364 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~l 364 (538)
||++.++++++||++.|+|+++.... ....|++|
T Consensus 91 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 91 WHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 99999999999999999999996542 34466654
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-17 Score=142.26 Aligned_cols=114 Identities=23% Similarity=0.405 Sum_probs=94.9
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~k 450 (538)
.|+|.+++.|.+. .+.|.|+|++|+||+. .+.+||||++++.+ .+++
T Consensus 2 ~G~l~~~l~~~~~-------------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~k 56 (125)
T cd04031 2 TGRIQIQLWYDKV-------------------------TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRR 56 (125)
T ss_pred cEEEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCcccccc
Confidence 5999999999865 7899999999999976 35799999999965 4569
Q ss_pred eecccCCCCCcCcceEEEEecCCC--CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPP--TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
|++++++.||+|||.|+|.+.... ....|.++|||++. ++++++||++.++|++... ....+||+|+
T Consensus 57 T~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~----~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 57 TKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR----DGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred ccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC----CCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 999999999999999999864321 24689999999975 5678999999999999433 3347999985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=141.14 Aligned_cols=107 Identities=25% Similarity=0.341 Sum_probs=90.4
Q ss_pred eeccccccc-ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeC-CC
Q 046405 245 EVQIMDPAK-AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD-PE 322 (538)
Q Consensus 245 ~~pl~~~~~-~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-~~ 322 (538)
..|++++.. ......|.|+|+|++|++|+. +..+.+||||+++++++ +++|++++++.||+|||+|.|.... ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~ 87 (127)
T cd04032 12 SSPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSP 87 (127)
T ss_pred CCCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCC
Confidence 356666554 347789999999999999984 66788999999999766 3599999999999999999997533 34
Q ss_pred CCeEEEEEEecCCCCCCCccEEEEEeCccCCCC
Q 046405 323 YQALELQVYDWEKVGHHDKMGMNVIPLKDITPE 355 (538)
Q Consensus 323 ~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~ 355 (538)
.+.|+|+|||++..++|++||++.+++.....+
T Consensus 88 ~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 88 GGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEEecCCcee
Confidence 689999999999999999999999999977643
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-17 Score=140.25 Aligned_cols=118 Identities=30% Similarity=0.501 Sum_probs=96.2
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC--C
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH--H 339 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~--d 339 (538)
|+|+|++|++|+..+..+.+||||++++++. ..++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGG--QTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCc--cceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 7899999999999998899999999999643 24699999999999999999999965 6799999999998765 5
Q ss_pred CccEEEEEeCccCCCCC-CceEEEeccccCCCCCCCCCccccEEEEEE
Q 046405 340 DKMGMNVIPLKDITPEE-PREMTLDLLKNMDPNDTRNEKSRGQVVVEV 386 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
++||++.+++.++.... ....|+++.+ ..+ ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~-~~~--~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRK-LKK--SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeec-CCC--CCCceEeeEEEEEe
Confidence 79999999999997654 3356777633 111 12356689988876
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=138.61 Aligned_cols=105 Identities=22% Similarity=0.303 Sum_probs=89.4
Q ss_pred eEEEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCC
Q 046405 418 GLLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKE 497 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~ 497 (538)
+.|.|+|++|++|+..+..||||++.+++.+.+|++.++ .||.|||.|.|.+.+. ...|.|+|||++. .+|+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd~-----~~DD 73 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKGL-----IWDT 73 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCCC-----cCCC
Confidence 589999999999998878899999999998889999988 5999999999999763 3559999999873 4899
Q ss_pred ccEEEEEecchhcccce--eceEEEcCCC---CCeEEE
Q 046405 498 TLGYIGINLADVVNNKR--INEKYHLIDS---KNGRIQ 530 (538)
Q Consensus 498 ~lG~~~i~L~~l~~~~~--~~~~~~L~~~---~~G~i~ 530 (538)
+||++.|+|+++..+.. ..+||+|... +.|++.
T Consensus 74 ~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~ 111 (127)
T cd08394 74 LVGTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIV 111 (127)
T ss_pred ceEEEEEEhHHcccCCCCCCCccEecChHHhccCCeEe
Confidence 99999999999996543 4899999732 355553
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-17 Score=140.87 Aligned_cols=117 Identities=33% Similarity=0.508 Sum_probs=99.8
Q ss_pred EEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEecCCCCCCCccE
Q 046405 266 VLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDWEKVGHHDKMG 343 (538)
Q Consensus 266 v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~~~~~~d~~lG 343 (538)
|++|++|+. ..|.+||||++++++.. ++|++++++.||+|||+|.|.+..+ ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 67899999999997654 4999999999999999999999754 4688999999999999999999
Q ss_pred EEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecC
Q 046405 344 MNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKG 393 (538)
Q Consensus 344 ~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (538)
++.++++++..+.....|++|... ......|+|+++++|.|...
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCCC
Confidence 999999999988777888887431 12335799999999998743
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-17 Score=142.66 Aligned_cols=118 Identities=24% Similarity=0.376 Sum_probs=99.2
Q ss_pred cccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEc-----CeeE
Q 046405 378 SRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFR-----GEEK 449 (538)
Q Consensus 378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~ 449 (538)
+.|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++. ..++
T Consensus 1 ~~G~l~~~l~y~~~-------------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~ 55 (127)
T cd04030 1 PLGRIQLTIRYSSQ-------------------------RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRR 55 (127)
T ss_pred CCeEEEEEEEEeCC-------------------------CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceE
Confidence 36999999999865 78899999999999863 579999999995 3467
Q ss_pred EeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
+|++++++.||+|||.|.|.+.... ....|.+.|||++..+ .+++++||++.++|.++..+....+||+|+
T Consensus 56 kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~--~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 56 KTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFL--SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCccc--CCCCceEEEEEEecccccccCCccceEECc
Confidence 9999999999999999999986431 2368999999987410 157899999999999998777789999984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-17 Score=141.55 Aligned_cols=115 Identities=18% Similarity=0.236 Sum_probs=98.7
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC---eeEEee
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG---EEKKTK 452 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~---~~~kT~ 452 (538)
.|+|.+++.|.+. .+.|.|+|++|+||+. .+.+||||++++.+ +.++|+
T Consensus 2 ~G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~ 56 (124)
T cd08385 2 LGKLQFSLDYDFQ-------------------------SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETK 56 (124)
T ss_pred ccEEEEEEEEeCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecc
Confidence 6999999999865 7899999999999986 35789999999853 356999
Q ss_pred cccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 453 RIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
+++++.||+|||.|.|.+.... ....|.|+|||++. ++++++||++.++|+++..+...++||+|.
T Consensus 57 v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 57 VHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR----FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred cCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9999999999999999986421 23589999999975 578899999999999998777789999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.7e-17 Score=140.28 Aligned_cols=113 Identities=19% Similarity=0.357 Sum_probs=98.3
Q ss_pred CceEEEEEEeeeccCCCC-------------CCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEEE
Q 046405 416 GGGLLVVILHEAQDVEGK-------------YHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHV 481 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~-------------~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v 481 (538)
..|.|+|+|++|+||... +.+||||++.++++. .+|++++++.||.|||.|+|.+.+ ...+.|
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~ 78 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLEL 78 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEE
Confidence 368999999999999752 358999999999866 599999999999999999999964 368999
Q ss_pred EEEEccCCCCCCCCCCccEEEEEecchhcc--cceeceEEEcCCCCCeEEEEEEEEEe
Q 046405 482 EVISTSSRMGLLHPKETLGYIGINLADVVN--NKRINEKYHLIDSKNGRIQIELQWRA 537 (538)
Q Consensus 482 ~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~--~~~~~~~~~L~~~~~G~i~l~~~wkp 537 (538)
.|+|++. ++.+++||++.++|+++.. +...+.||+|. +.|+|+|+++|+.
T Consensus 79 ~v~d~~~----~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAA----IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCC----CCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEec
Confidence 9999874 5678999999999999987 45679999997 5899999999985
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-17 Score=141.29 Aligned_cols=109 Identities=36% Similarity=0.553 Sum_probs=94.4
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeC---CCCCeEEEEEEe
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD---PEYQALELQVYD 332 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~d 332 (538)
....+.|+|+|++|+||+..+..+.+||||++++.+......+|++++++.||.|||+|.|.+.. .....|.++|||
T Consensus 12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 44568999999999999999988999999999996544445799999999999999999997532 234679999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
++..+++++||++.++++++..++....|+.|
T Consensus 92 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 92 YDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred CCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 99999999999999999999988888888876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-17 Score=139.18 Aligned_cols=110 Identities=18% Similarity=0.288 Sum_probs=94.8
Q ss_pred EEEEEeeeccCCCC----CCCCCeEEEEEcCe-eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCC
Q 046405 420 LVVILHEAQDVEGK----YHTNPSARILFRGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLH 494 (538)
Q Consensus 420 L~v~v~~a~~L~~~----~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
|.|.|.+|+||+.. +.+||||+++++++ ..+|+++++|.||+|||.|+|.+.+. ...|.|.|||++. ++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~--~~~l~~~v~d~~~----~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT--FRHLSFYIYDRDV----LR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC--CCEEEEEEEECCC----CC
Confidence 67899999999863 46899999999775 46999999999999999999999752 4689999999985 57
Q ss_pred CCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEE
Q 046405 495 PKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 495 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 535 (538)
+|++||.+.++++++..+...+.||+|+... +|+|+|++.+
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 8999999999999998777778999998532 6999998764
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-17 Score=141.63 Aligned_cols=106 Identities=24% Similarity=0.309 Sum_probs=88.8
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCC-CCeEEEEEEecC
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPE-YQALELQVYDWE 334 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~~ 334 (538)
..+.|.|+|++|+||+.++ .|.+||||++++.+.. ..++||++++++.||.|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 3589999999999999988 7899999999997643 23568999999999999999999985432 357899999998
Q ss_pred CCC-CCCccEEEEEeCccCCCCCCceEEEec
Q 046405 335 KVG-HHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 335 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
..+ ++++||++.+++.++..++....|+.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 775 478999999999999877666677653
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=137.40 Aligned_cols=99 Identities=30% Similarity=0.485 Sum_probs=87.3
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
.|.|+|++|++|+..+..+.+||||+++++++ .++|++++++.||.|||.|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~---~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCE---EEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 38999999999999988899999999999874 3589999999999999999999988777899999999975 88
Q ss_pred ccEEEEEeCccCCCCC--CceEEEecc
Q 046405 341 KMGMNVIPLKDITPEE--PREMTLDLL 365 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~--~~~~~~~l~ 365 (538)
+||++.++|.++.... ....|++|.
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecC
Confidence 9999999999998654 456788773
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-17 Score=140.28 Aligned_cols=112 Identities=21% Similarity=0.305 Sum_probs=94.0
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC------eeEEe
Q 046405 381 QVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG------EEKKT 451 (538)
Q Consensus 381 ~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~------~~~kT 451 (538)
+|.+++.|.|. .+.|.|+|++|+||+. .+.+||||++++-. .++||
T Consensus 2 ~i~~sL~Y~~~-------------------------~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT 56 (124)
T cd08680 2 QVQIGLRYDSG-------------------------DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRT 56 (124)
T ss_pred eEEEEEEECCC-------------------------CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEc
Confidence 68899999865 7899999999999976 36799999999831 35699
Q ss_pred ecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhccc-ceeceEEEc
Q 046405 452 KRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN-KRINEKYHL 521 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L 521 (538)
++++++.||+|||.|+|.+.... ....|.+.||+.+. ++++++||.+.|+|+++... +....||+|
T Consensus 57 ~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 57 KALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGP----DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCC----CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 99999999999999999987432 24589999999974 57899999999999999544 457889986
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-17 Score=137.47 Aligned_cols=99 Identities=22% Similarity=0.420 Sum_probs=87.6
Q ss_pred CCCCCeEEEEEcCe-eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhccc
Q 046405 434 YHTNPSARILFRGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN 512 (538)
Q Consensus 434 ~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~ 512 (538)
|.+||||+++++++ ..+|++++++.||+|||.|+|.+.+. ..+.|.|+|+|++. + +|++||++.++|+++...
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~----~-~d~~iG~~~v~L~~l~~~ 84 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRD----R-HDPVLGSVSISLNDLIDA 84 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCC----C-CCCeEEEEEecHHHHHhh
Confidence 67999999999875 46999999999999999999999874 45789999999975 5 799999999999999764
Q ss_pred -ceeceEEEcCCCCCeEEEEEEEEEeC
Q 046405 513 -KRINEKYHLIDSKNGRIQIELQWRAS 538 (538)
Q Consensus 513 -~~~~~~~~L~~~~~G~i~l~~~wkp~ 538 (538)
....+||+|.+.++|+|+++++|+|+
T Consensus 85 ~~~~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 85 TSVGQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred hhccceeEECCCCCCCEEEEEEEEecC
Confidence 44689999998789999999999996
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-17 Score=145.64 Aligned_cols=128 Identities=19% Similarity=0.285 Sum_probs=101.4
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEc-----CeeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFR-----GEEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~k 450 (538)
+|+|.+++.|.|...+.. +.......|.|.|+|++|+||+.. +.+||||++++. ..++|
T Consensus 1 ~G~l~~~l~y~~~~~~~~-------------~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~k 67 (162)
T cd04020 1 RGELKVALKYVPPESEGA-------------LKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQK 67 (162)
T ss_pred CceEEEEEEecCcccccc-------------ccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCccee
Confidence 599999999999754321 111234689999999999999863 579999999983 24579
Q ss_pred eecccCCCCCcCcceEEEEecCC--CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCC
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEP--PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLID 523 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 523 (538)
|++++++.||.|||.|.|.+... .....|.|+|||++. ++++++||++.++++++...+....||.+.+
T Consensus 68 T~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~----~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 68 TPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDK----LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCC----CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 99999999999999999986421 123479999999985 5689999999999999876655677777754
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-17 Score=141.03 Aligned_cols=109 Identities=31% Similarity=0.400 Sum_probs=94.9
Q ss_pred cCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEE-EeC--CCCCeEEEEEE
Q 046405 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLV-VKD--PEYQALELQVY 331 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~~L~v~v~ 331 (538)
.....+.|.|+|++|+||+..+..|.+||||++.+.+....+++|+++++ .||+|||+|.|. +.. .....|.++||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 34556899999999999999998889999999998666556679999888 999999999998 542 23678999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|++.++++++||++.++|+++..++....|++|
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 999999999999999999999888888888876
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-17 Score=140.49 Aligned_cols=109 Identities=28% Similarity=0.420 Sum_probs=92.9
Q ss_pred CCceeEEEEEEEEecCCCcCC-CCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKD-LIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 330 (538)
....|.|.|+|++|+||+..+ ..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.++|
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 10 NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 446789999999999999988 67899999999985432 2457999999999999999999998643 256899999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
||++..+++++||++.++++++..+.....|++|
T Consensus 90 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999999999999999999999877667777764
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-17 Score=140.42 Aligned_cols=109 Identities=29% Similarity=0.367 Sum_probs=93.9
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVY 331 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~ 331 (538)
....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+.||
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 34568999999999999999988999999999996532 3457999999999999999999998543 3578999999
Q ss_pred ecCCC--CCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 332 DWEKV--GHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 332 d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|++.. ++|++||++.+++.++..++....|++|
T Consensus 92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 92 NSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred ECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 99875 6899999999999999887777788876
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=138.69 Aligned_cols=115 Identities=27% Similarity=0.492 Sum_probs=95.1
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCC----
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKV---- 336 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~---- 336 (538)
.|+|+|++|++|+..|..|.+||||++++++.. ++|++++++.||.|||+|.|.+..+ ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 689999999999999988999999999997543 5899999999999999999998655 56899999999852
Q ss_pred -------CCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEE
Q 046405 337 -------GHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEV 386 (538)
Q Consensus 337 -------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
+.+++||++.+++.++... ...|+.|.+.. .....+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-----CCCcEeEEEEEEC
Confidence 4799999999999988643 45788775432 2356799999864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-17 Score=144.06 Aligned_cols=106 Identities=36% Similarity=0.540 Sum_probs=91.1
Q ss_pred ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCC--------------------------CceeeeecCCCCC
Q 046405 254 AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL--------------------------PSKKTTVKHRNLN 307 (538)
Q Consensus 254 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~--------------------------~~~~T~v~~~t~n 307 (538)
....+.+.|.|+|++|++|...|..|.+||||++.+.+... ..++|++++++.|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 45678999999999999999999999999999999964311 2368999999999
Q ss_pred ceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 308 PEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 308 P~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|.|||+|.|.+.++..+.|.|+|||++ |++||++.++++++.. ...+.|++|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999998766789999999997 8899999999999984 345677754
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-17 Score=136.38 Aligned_cols=102 Identities=22% Similarity=0.253 Sum_probs=85.8
Q ss_pred EEEEEEeeeccCCCC--CCCCCeEEEEEcC-------eeEEeecccCCCCCcCcceEEEEecCC--CCCCeEEEEEEEcc
Q 046405 419 LLVVILHEAQDVEGK--YHTNPSARILFRG-------EEKKTKRIKKNRDPRWEEEFQFTLEEP--PTDDKLHVEVISTS 487 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~--~~~dpyv~v~~~~-------~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~ 487 (538)
.|+|+|++|+||+.. |.+||||++++.+ ++++|+++.++.||+|||.|+|.+.+. +....|.|.|+|++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 489999999999874 6899999999832 235899999999999999999999753 22346999999987
Q ss_pred CCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 488 SRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
. .++|++||++.++|+++..++....|++|...
T Consensus 81 ~----~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 81 F----ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred c----cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 4 46789999999999999988888999999754
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.2e-17 Score=139.14 Aligned_cols=108 Identities=31% Similarity=0.468 Sum_probs=89.5
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCC---CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDP---EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v 330 (538)
....|.|+|+|++|++|+..+..+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 12 DKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 34568999999999999999888999999999996532 2356899999999999999999986442 357899999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
||++..+++++||++.++|++... .....|++|
T Consensus 92 ~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 92 WDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 999999999999999999998332 334567765
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=137.57 Aligned_cols=114 Identities=18% Similarity=0.357 Sum_probs=96.7
Q ss_pred eEEEEEEeeeccCCCC----CCCCCeEEEEEcC--eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCC
Q 046405 418 GLLVVILHEAQDVEGK----YHTNPSARILFRG--EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMG 491 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g 491 (538)
|.|+|+|++|+||+.. +.+||||++++++ ..++|++++++.||.|||.|.|.+.. ..+.|.++|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~--- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFND--- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCC---
Confidence 7899999999999852 4689999999988 67899999999999999999999873 46799999999975
Q ss_pred CCCCCCccEEEEEecchhcccceece-EEEcCC--CCCeEEEEEEEEEe
Q 046405 492 LLHPKETLGYIGINLADVVNNKRINE-KYHLID--SKNGRIQIELQWRA 537 (538)
Q Consensus 492 ~~~~d~~lG~~~i~L~~l~~~~~~~~-~~~L~~--~~~G~i~l~~~wkp 537 (538)
.++|++||+++++|.++..+..... ++.+.. ...|+|+++++|.|
T Consensus 77 -~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 -KRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred -CCCCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 4688999999999999998765543 444443 24799999999987
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-16 Score=137.18 Aligned_cols=111 Identities=23% Similarity=0.463 Sum_probs=97.5
Q ss_pred EeeeccCCC-CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCC-CCCCeEEEEEEEccCCCCCCCCCCccEE
Q 046405 424 LHEAQDVEG-KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEP-PTDDKLHVEVISTSSRMGLLHPKETLGY 501 (538)
Q Consensus 424 v~~a~~L~~-~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~~l~v~V~d~~~~~g~~~~d~~lG~ 501 (538)
|++|+||+. .+.+||||++++++.+++|++++++.||+|||.|.|.+... ...+.|.++|||++. +++|++||+
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~----~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK----VGRNRLIGS 77 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC----CCCCceEEE
Confidence 678999987 56899999999999999999999999999999999999764 245789999999975 467899999
Q ss_pred EEEecchhcccceeceEEEcCCC----CCeEEEEEEEEEeC
Q 046405 502 IGINLADVVNNKRINEKYHLIDS----KNGRIQIELQWRAS 538 (538)
Q Consensus 502 ~~i~L~~l~~~~~~~~~~~L~~~----~~G~i~l~~~wkp~ 538 (538)
+.++|+++..+.....|++|.+. ..|+|+++++|.|+
T Consensus 78 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 78 ATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 99999999988888999999754 25999999999985
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=137.64 Aligned_cols=110 Identities=29% Similarity=0.424 Sum_probs=95.4
Q ss_pred cCCceeEEEEEEEEecCCCcCC-CCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEE
Q 046405 255 MQKPVGILNVKVLRAMKLKKKD-LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVY 331 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~ 331 (538)
.....+.|.|+|++|+||+..+ ..+.+||||++++.+.....++|++++++.||+|||+|.|.+.... ...|.|+||
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 3456789999999999999988 6788999999999654444568999999999999999999986432 457999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|++..+++++||++.++|.++........|++|
T Consensus 89 d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 89 DVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred ECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 999988999999999999999988888889886
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=141.87 Aligned_cols=113 Identities=21% Similarity=0.410 Sum_probs=95.5
Q ss_pred ceEEEEEEeeeccCCC---------------------------------CCCCCCeEEEEEcCee-EEeecccCCCCCcC
Q 046405 417 GGLLVVILHEAQDVEG---------------------------------KYHTNPSARILFRGEE-KKTKRIKKNRDPRW 462 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~---------------------------------~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~w 462 (538)
-|.|.|+|++|++|+. .+.+||||++.+++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 4788888888888864 2347999999998866 49999999999999
Q ss_pred cceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC------CCeEEEEEEEEE
Q 046405 463 EEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS------KNGRIQIELQWR 536 (538)
Q Consensus 463 ne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~G~i~l~~~wk 536 (538)
||.|+|.+... .+.|.++|+|++. + ++++||++.++++++..+...++||+|.+. +.|+|+++++|.
T Consensus 86 nE~F~~~~~~~--~~~l~~~V~d~d~----~-~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 86 NESFHIYCAHY--ASHVEFTVKDNDV----V-GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ceEEEEEccCC--CCEEEEEEEeCCC----c-CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999998753 4689999999874 3 468999999999999987778999999764 258999999984
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=136.53 Aligned_cols=110 Identities=26% Similarity=0.451 Sum_probs=95.1
Q ss_pred EEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 419 LLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
+|+|+|++|++|+.. +.+||||++++++...+|++++++.||.|||.|.|.+... ....|.|+|||++. +++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~----~~~ 75 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDL----VSK 75 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCC----CCC
Confidence 489999999999763 4789999999999889999999999999999999999874 45789999999975 567
Q ss_pred CCccEEEEEecchhcccceeceEEEcCCC---------CCeEEEEEE
Q 046405 496 KETLGYIGINLADVVNNKRINEKYHLIDS---------KNGRIQIEL 533 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~---------~~G~i~l~~ 533 (538)
+++||++.++|+++........||.|... ..|.|++.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 76 NDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 89999999999999876667899999852 248888875
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-17 Score=143.13 Aligned_cols=115 Identities=22% Similarity=0.404 Sum_probs=93.8
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC-----CCCCCeEEEEEcCe-----e
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK-----YHTNPSARILFRGE-----E 448 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~-----~~~dpyv~v~~~~~-----~ 448 (538)
.|+|.++++|.|. .+.|.|+|++|+||... +.+||||++++... +
T Consensus 1 ~Gel~~sL~Y~~~-------------------------~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~k 55 (138)
T cd08407 1 TGEVLLSISYLPA-------------------------ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKK 55 (138)
T ss_pred CCEEEEEEEEeCC-------------------------CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccce
Confidence 4999999999986 78899999999999763 34899999998642 4
Q ss_pred EEeecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 449 KKTKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
+||++++++.||+|||.|.|.+..... +..|.++|+|++. ++++++||++.+++.. .+....+|..+..+
T Consensus 56 kkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~----~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~ 126 (138)
T cd08407 56 KQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDS----PGQSLPLGRCSLGLHT--SGTERQHWEEMLDN 126 (138)
T ss_pred eccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCC----CcCcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence 599999999999999999999975322 4579999999985 6789999999999975 33345666665544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=137.26 Aligned_cols=113 Identities=20% Similarity=0.332 Sum_probs=95.8
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC----CCCCCCeEEEEEcC-----eeEE
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG----KYHTNPSARILFRG-----EEKK 450 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~----~~~~dpyv~v~~~~-----~~~k 450 (538)
|+|++++.|.+. .+.|.|+|++|+||+. .+.+||||++++.. .+++
T Consensus 1 G~i~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~k 55 (123)
T cd08521 1 GEIEFSLSYNYK-------------------------TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRK 55 (123)
T ss_pred CeEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceee
Confidence 899999999754 7899999999999975 35799999999842 3469
Q ss_pred eecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEc
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHL 521 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 521 (538)
|++++++.||+|||.|.|.+.... ....|.++|||++. ++++++||++.++|+++..+...+.||+|
T Consensus 56 T~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 56 TSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR----FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC----CcCCceeeEEEEecccccccCCCccEEEC
Confidence 999999999999999999987532 14589999999875 56889999999999999776677999987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.7e-17 Score=136.12 Aligned_cols=101 Identities=28% Similarity=0.417 Sum_probs=87.0
Q ss_pred EEEEEEEecCCCcCCC-CCCCCcEEEEEEcCCCCCceeeeecCCCCCcee-eeEEEEEEeCCC--CCeEEEEEEecCCCC
Q 046405 262 LNVKVLRAMKLKKKDL-IGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEW-NEEFGLVVKDPE--YQALELQVYDWEKVG 337 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~W-ne~f~f~v~~~~--~~~L~v~v~d~~~~~ 337 (538)
|.|+|++|++|+.++. .|.+||||++++++. .+||++++++.||.| ||+|.|.+.... .+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999998884 688999999999863 459999999999999 999999997542 468999999999999
Q ss_pred CCCccEEEEEeCccCCCC---CCceEEEecc
Q 046405 338 HHDKMGMNVIPLKDITPE---EPREMTLDLL 365 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~~---~~~~~~~~l~ 365 (538)
+|++||++.+++.++... .....|++|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 999999999999999873 3456777764
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-16 Score=135.98 Aligned_cols=115 Identities=19% Similarity=0.258 Sum_probs=97.1
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEc---CeeEEee
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFR---GEEKKTK 452 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~---~~~~kT~ 452 (538)
.|+|++++.|.+. .+.|.|+|++|+||+. .+.+||||++++. +...+|+
T Consensus 2 ~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~ 56 (125)
T cd08386 2 LGRIQFSVSYDFQ-------------------------ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETK 56 (125)
T ss_pred ccEEEEEEEECCC-------------------------CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeee
Confidence 6999999999754 6789999999999976 3579999999993 4557999
Q ss_pred cccCCCCCcCcceEEEEecCC--CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 453 RIKKNRDPRWEEEFQFTLEEP--PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
+++++.||.|||.|.|.+... .....|.++|||++. ++++++||++.++|+++......+.||+|+
T Consensus 57 v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 57 VKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR----FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC----CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999999999999999975321 123579999999985 567899999999999998777789999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=143.89 Aligned_cols=109 Identities=30% Similarity=0.347 Sum_probs=92.8
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC---CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP---EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v 330 (538)
..+.|.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V 102 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTV 102 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEE
Confidence 4578999999999999999998899999999998532 23457999999999999999999985322 246799999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
||++.+++|++||++.+++.++........|+.+
T Consensus 103 ~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 103 WDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred EeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 9999999999999999999999876666677665
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-16 Score=136.48 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=96.3
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcC---eeEEee
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRG---EEKKTK 452 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~---~~~kT~ 452 (538)
.|+|.+++.|.+. .+.|.|+|++|+||+.. +..||||++.+.. .++||+
T Consensus 2 ~G~l~~sl~Y~~~-------------------------~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTk 56 (124)
T cd08389 2 CGDLDVAFEYDPS-------------------------ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTK 56 (124)
T ss_pred CEEEEEEEEECCC-------------------------CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecc
Confidence 6999999999865 78899999999999863 5789999988733 356999
Q ss_pred cccCCCCCcCcceEEEE-ecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 453 RIKKNRDPRWEEEFQFT-LEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~wne~f~f~-v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
++++ .||+|||.|.|. +.... ....|.++|+|+++ ++++++||.+.|+|+++..++....||+|+
T Consensus 57 v~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 57 VQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER----MRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred cccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC----cccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9888 999999999998 54321 24579999999975 578999999999999998777789999996
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=139.29 Aligned_cols=92 Identities=24% Similarity=0.445 Sum_probs=84.4
Q ss_pred CceEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 416 GGGLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
..|.|+|.|.+|.||..+ +++||||.+.+++++.||+++++++||+|||.|+|.+.++ +..|.++|||+|+
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~---- 77 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDT---- 77 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCC----
Confidence 469999999999999763 6899999999999999999999999999999999999985 5789999999997
Q ss_pred CCCCCccEEEEEecchhcccc
Q 046405 493 LHPKETLGYIGINLADVVNNK 513 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~~~ 513 (538)
+++|++||.++|+|..+++..
T Consensus 78 fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred CCcccccceeeeccHHHHHHh
Confidence 789999999999999987654
|
|
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=138.40 Aligned_cols=103 Identities=32% Similarity=0.532 Sum_probs=90.5
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecC-CCCCceeeeEEEEEEeCC---CCCeEEEEEEecCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNLNPEWNEEFGLVVKDP---EYQALELQVYDWEK 335 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~~~ 335 (538)
|.|.|+|++|++|+..+..+.+||||+++++++. ++|++.. ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999998888999999999997654 3788777 489999999999999876 25789999999999
Q ss_pred CCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 336 VGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+++|++||++.+++.++..++..+.|+.+.
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 889999999999999999877777787764
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=133.31 Aligned_cols=113 Identities=39% Similarity=0.622 Sum_probs=96.8
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCc
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~ 341 (538)
|+|+|++|++|+..+..+.+||||++.+.+.. .++|+++.++.||.|||+|.|.+.....+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999998888899999999997533 3699999999999999999999977667889999999999889999
Q ss_pred cEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEE
Q 046405 342 MGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVV 383 (538)
Q Consensus 342 lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~ 383 (538)
||++.+++.++..+.....|++|.. +++...|.|.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~-------~g~~~~~~~~ 113 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDG-------QGGGKLGAVF 113 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcC-------CCCccCceEE
Confidence 9999999999998878888888743 1245566654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=134.24 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=83.9
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
+|.|.|+|++|++|+..+ ..||||++.+++++ .+|++.++ .||.|||+|.|.+.+. ...|.|+|||+|.+ .
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~-~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLI-W 71 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCc-C
Confidence 478999999999997654 45999999998754 48888877 4999999999999775 45599999999855 8
Q ss_pred CCccEEEEEeCccCCCCCCc--eEEEeccccC
Q 046405 339 HDKMGMNVIPLKDITPEEPR--EMTLDLLKNM 368 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~~~~--~~~~~l~~~~ 368 (538)
||+||++.++|.++..++.. ..|++|....
T Consensus 72 DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 72 DTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV 103 (127)
T ss_pred CCceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence 99999999999999866544 6788876543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=138.02 Aligned_cols=115 Identities=23% Similarity=0.376 Sum_probs=95.5
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecC-CCCCceeeeEEEEEEeCCC----CCeEEEEEEecCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNLNPEWNEEFGLVVKDPE----YQALELQVYDWEK 335 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~~~ 335 (538)
+|+|+|++|++|+..+..+.+||||++++++.. .++|++.. ++.||.|||.|.|.+.... ...|.++|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 489999999999999888999999999998722 34888875 5899999999999997763 6789999999998
Q ss_pred CCCCCccEEEEEeCccCCCCCC-----ceEEEeccccCCCCCCCCCccccEEEE
Q 046405 336 VGHHDKMGMNVIPLKDITPEEP-----REMTLDLLKNMDPNDTRNEKSRGQVVV 384 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l 384 (538)
+++|++||++.+++.++..+.. +..|++|... +++..|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-------~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-------SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-------CCCcCeEEeC
Confidence 8899999999999999987654 3567776431 2677888874
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.3e-16 Score=136.35 Aligned_cols=124 Identities=20% Similarity=0.289 Sum_probs=97.3
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCCCceeeeecCCCCCceeeeEEEEEEeCCC--------CCeEEEE
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE--------YQALELQ 329 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--------~~~L~v~ 329 (538)
|.|.|....+.+|+..+..+.+||||++++ .+....+.||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 455555444445778777789999999997 334445679999999999999999999996431 4579999
Q ss_pred EEecCCC-CCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 330 VYDWEKV-GHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 330 v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
|||++.+ ++|++||++.++|+.+..+.....+++|... .....|+|++++....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecC
Confidence 9999876 5799999999999999887666678887531 2456789999987753
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-16 Score=132.57 Aligned_cols=92 Identities=12% Similarity=0.264 Sum_probs=81.1
Q ss_pred eEEEEEEeeeccCCCC-------CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCC
Q 046405 418 GLLVVILHEAQDVEGK-------YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRM 490 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~-------~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~ 490 (538)
|+|.|+|++|+||+.. +.+||||+++++++.+||++++++.||+|||.|.|.+.+......|.++|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-- 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-- 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC--
Confidence 7899999999999862 2489999999998889999999999999999999999764444579999999985
Q ss_pred CCCCCCCccEEEEEecchhcccc
Q 046405 491 GLLHPKETLGYIGINLADVVNNK 513 (538)
Q Consensus 491 g~~~~d~~lG~~~i~L~~l~~~~ 513 (538)
+++|++||++.++|+++..+.
T Consensus 79 --~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 --FSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred --CCCCcceEEEEEEHHHHHhhC
Confidence 578999999999999998754
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-16 Score=132.79 Aligned_cols=110 Identities=25% Similarity=0.412 Sum_probs=95.4
Q ss_pred eEEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCC
Q 046405 418 GLLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLH 494 (538)
Q Consensus 418 g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
|.|+|+|++|+||+. .+.+||||++++++...+|++++++.||.|||.|.|.+.+ ..+.+.++|||++. ++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~----~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD--IHDVLEVTVYDEDK----DK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC--cCCEEEEEEEECCC----CC
Confidence 689999999999986 3578999999999888999999999999999999999875 35789999999975 46
Q ss_pred CCCccEEEEEecchhcccceeceEEEcCCC-----CCeEEEEEEEE
Q 046405 495 PKETLGYIGINLADVVNNKRINEKYHLIDS-----KNGRIQIELQW 535 (538)
Q Consensus 495 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w 535 (538)
++++||++.+++.++..+. .+||+|.+. .+|+|.+++++
T Consensus 75 ~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CCceeeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 7899999999999986543 689999754 27999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=137.22 Aligned_cols=120 Identities=15% Similarity=0.246 Sum_probs=94.7
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcC-----eeEEe
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRG-----EEKKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~kT 451 (538)
.+|.++++|.|. .|+|+|+|++|+||+.. +.+||||++++-. +++||
T Consensus 1 ~el~~sL~Y~p~-------------------------~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT 55 (135)
T cd08692 1 AELQLGTCFQAV-------------------------NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKT 55 (135)
T ss_pred CeEEEEeeecCc-------------------------CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecC
Confidence 378999999987 89999999999999874 4569999999842 35699
Q ss_pred ecccCCC-CCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEE
Q 046405 452 KRIKKNR-DPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRI 529 (538)
Q Consensus 452 ~v~~~t~-nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 529 (538)
+++++|. ||+|||.|.|.+.....+-.+.|+|+|+++ ++++++||++.++.+.. .....++|.+...+++-.|
T Consensus 56 ~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~----~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 56 RLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS----VRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred ccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC----CcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 9999995 699999999999864333478889999875 57899999999999863 2233578877665544433
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.69 E-value=7e-17 Score=140.92 Aligned_cols=115 Identities=19% Similarity=0.313 Sum_probs=94.5
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcCe-----eEEe
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRGE-----EKKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~-----~~kT 451 (538)
|+|.++++|.|. .+.|.|+|++|+||+. .+.+||||++++... ++||
T Consensus 2 G~i~~sL~Y~~~-------------------------~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT 56 (136)
T cd08406 2 GEILLSLSYLPT-------------------------AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKT 56 (136)
T ss_pred cEEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCC
Confidence 899999999876 6789999999999986 357899999999432 4589
Q ss_pred ecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC
Q 046405 452 KRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 525 (538)
++++++.||+|||.|.|.+.... ....|.|+|+|++. ++++++||++.|+... .+....+|+.+..++
T Consensus 57 ~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~----~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~ 125 (136)
T cd08406 57 SVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE----DGKTPNVGHVIIGPAA--SGMGLSHWNQMLASL 125 (136)
T ss_pred ccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC----CCCCCeeEEEEECCCC--CChhHHHHHHHHHCC
Confidence 99999999999999999987532 24579999999985 5789999999998764 344567888776654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=134.61 Aligned_cols=103 Identities=28% Similarity=0.480 Sum_probs=90.4
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHH 339 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d 339 (538)
|+|+|+|++|++|+..+..|.+||||++++++.. .++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999888999999999997542 35899999999999999999998765 57899999999999999
Q ss_pred CccEEEEEeCccCCCCCCceEEEeccc
Q 046405 340 DKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
++||++.+++.++..+ ..+.|+.+..
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999887 5566666644
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-16 Score=135.32 Aligned_cols=115 Identities=20% Similarity=0.301 Sum_probs=94.5
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---C-CCCCCeEEEEEcC---eeEEe
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---K-YHTNPSARILFRG---EEKKT 451 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~-~~~dpyv~v~~~~---~~~kT 451 (538)
.|+|.+++.|.+. .+.|+|+|++|+||+. . +.+||||++++.. ++.||
T Consensus 2 ~G~l~~~l~y~~~-------------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT 56 (128)
T cd08388 2 LGTLFFSLRYNSE-------------------------KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKT 56 (128)
T ss_pred CeEEEEEEEEECC-------------------------CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeec
Confidence 6999999999864 6899999999999986 2 5789999999853 34699
Q ss_pred ecccCCCCCcCcceEEEE-ecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhccc--ceeceEEEcC
Q 046405 452 KRIKKNRDPRWEEEFQFT-LEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN--KRINEKYHLI 522 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~L~ 522 (538)
++++++.||+|||.|.|. +.... ....|.++|||++. +++|++||++.++|+++.-. +....|.+|+
T Consensus 57 ~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~----~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 57 RVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR----YSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred cEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC----CCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 999999999999999994 43211 23479999999875 67899999999999998643 5678888875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=140.25 Aligned_cols=102 Identities=25% Similarity=0.274 Sum_probs=85.4
Q ss_pred EEEEEEeeeccCCC-CCCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecC-----------C---CCCCe
Q 046405 419 LLVVILHEAQDVEG-KYHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEE-----------P---PTDDK 478 (538)
Q Consensus 419 ~L~v~v~~a~~L~~-~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~-----------~---~~~~~ 478 (538)
.|.|+|++|+||+. .|.+||||++++.+ .+++|++++++.||+|||.|+|.+.. + .....
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 37899999999987 35799999999976 45699999999999999999999951 0 11247
Q ss_pred EEEEEEEccCCCCCCCCCCccEEEEEecchhccc-ceeceEEEcCCC
Q 046405 479 LHVEVISTSSRMGLLHPKETLGYIGINLADVVNN-KRINEKYHLIDS 524 (538)
Q Consensus 479 l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L~~~ 524 (538)
|.|+|||++. +++|++||++.|+|.++... .....||+|...
T Consensus 81 L~i~V~d~~~----~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 81 LRVDLWHASM----GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEcCCC----CCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 8999999975 46899999999999999876 567899999653
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.7e-17 Score=141.38 Aligned_cols=107 Identities=25% Similarity=0.352 Sum_probs=88.4
Q ss_pred CceeEEEEEEEEecCCCcCCC--CCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEE
Q 046405 257 KPVGILNVKVLRAMKLKKKDL--IGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQV 330 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 330 (538)
...|.|.|+|++|+||...+. .+.+||||++++.++ +..++||++++++.||+|||+|.|.+... ....|.|+|
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEE
Confidence 346889999999999999873 355899999999764 34467999999999999999999998643 357799999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
||+|.++++++||++.+++.. .+++.++|.++.
T Consensus 92 ~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 92 LNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred EeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 999999999999999999975 344555666553
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-16 Score=138.66 Aligned_cols=107 Identities=19% Similarity=0.303 Sum_probs=91.0
Q ss_pred EEEEEEeeeccCCCC-----------------CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEE
Q 046405 419 LLVVILHEAQDVEGK-----------------YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHV 481 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~-----------------~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v 481 (538)
.|.|+|++|++|+.. +.+||||++.+++++.||++++++.||+|||.|.|.+..++..+.|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999863 258999999999999999999999999999999999865445678999
Q ss_pred EEEEccCCCCCCCCCCccEEEEEecchhcccce-------eceEEEcCCCCCeEE
Q 046405 482 EVISTSSRMGLLHPKETLGYIGINLADVVNNKR-------INEKYHLIDSKNGRI 529 (538)
Q Consensus 482 ~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~-------~~~~~~L~~~~~G~i 529 (538)
+|||++. +++|++||++.++|.++...+. ...|+.|.+++.+..
T Consensus 81 ~v~D~d~----~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~ 131 (151)
T cd04018 81 QIRDWDR----VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYS 131 (151)
T ss_pred EEEECCC----CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccccc
Confidence 9999985 5689999999999999887542 369999998765543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=132.92 Aligned_cols=101 Identities=23% Similarity=0.408 Sum_probs=87.4
Q ss_pred EEEEEeeeccCCC----CCCCCCeEEEEEcCeeEEeecccCCCCCcC-cceEEEEecCCCC-CCeEEEEEEEccCCCCCC
Q 046405 420 LVVILHEAQDVEG----KYHTNPSARILFRGEEKKTKRIKKNRDPRW-EEEFQFTLEEPPT-DDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 420 L~v~v~~a~~L~~----~~~~dpyv~v~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~ 493 (538)
|.|+|++|+||+. .+.+||||++++++..+||++++++.||.| ||.|.|.+..... .+.|.|+|||++. +
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~----~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT----Y 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC----C
Confidence 5799999999975 246899999999998899999999999999 9999999976422 3689999999975 5
Q ss_pred CCCCccEEEEEecchhcc---cceeceEEEcCCC
Q 046405 494 HPKETLGYIGINLADVVN---NKRINEKYHLIDS 524 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~---~~~~~~~~~L~~~ 524 (538)
+++++||++.+++.++.. +...+.||+|.++
T Consensus 77 ~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~~ 110 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYDT 110 (110)
T ss_pred CCCCceEEEEEeHHHhcccCCccccCCeEEcccC
Confidence 788999999999999988 3458999999863
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=133.37 Aligned_cols=118 Identities=25% Similarity=0.398 Sum_probs=94.3
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCC----------CceeeeecCCCCCcee-eeEEEEEEeCCCCCeEEEE
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL----------PSKKTTVKHRNLNPEW-NEEFGLVVKDPEYQALELQ 329 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~----------~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~L~v~ 329 (538)
+..|++++|+||+ ++..|++||||++++.+... +.++|+++++++||+| ||+|.|.+.. .+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4679999999998 67789999999999965332 3579999999999999 9999999853 5789999
Q ss_pred EEecCCCCC---CCccEEEEEeCccCCCCC---CceEEEeccccCCCCCCCCCccccEEEEEE
Q 046405 330 VYDWEKVGH---HDKMGMNVIPLKDITPEE---PREMTLDLLKNMDPNDTRNEKSRGQVVVEV 386 (538)
Q Consensus 330 v~d~~~~~~---d~~lG~~~i~l~~l~~~~---~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
|||++..++ +++||++.+++.++..+. ....++++.++. ..+..+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEEe
Confidence 999865443 799999999999998663 244666665432 2467889998875
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=139.03 Aligned_cols=93 Identities=41% Similarity=0.699 Sum_probs=85.1
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
.|.|+|+|++|++|+..+. +.+||||+++++++. .+|++++++.||+|||+|.|.+.++ ...+.++|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 3899999999999998887 899999999998654 5999999999999999999999877 7889999999999999
Q ss_pred CCccEEEEEeCccCCCCC
Q 046405 339 HDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~~ 356 (538)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999998653
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-16 Score=138.78 Aligned_cols=107 Identities=26% Similarity=0.294 Sum_probs=88.2
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeC--CCCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKD--PEYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~d 332 (538)
...+.|.|+|++|+||+..+..|.+||||++++.+. ...++||++++++.||+|||+|.|.+.. .....|.|+|||
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~ 91 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE 91 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence 346789999999999999988899999999999543 3335689999999999999999999864 346789999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+|..+++++||++.++... .++..+.|.++.
T Consensus 92 ~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml 122 (136)
T cd08406 92 STEDGKTPNVGHVIIGPAA--SGMGLSHWNQML 122 (136)
T ss_pred CCCCCCCCeeEEEEECCCC--CChhHHHHHHHH
Confidence 9999999999999997764 344455555543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-16 Score=136.09 Aligned_cols=93 Identities=34% Similarity=0.537 Sum_probs=83.3
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
+|+|+|++|++|+..+..|.+||||++++++... ..+|++++++.||.|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4899999999999999889999999999987653 357888889999999999999987776789999999999999999
Q ss_pred ccEEEEEeCccCCC
Q 046405 341 KMGMNVIPLKDITP 354 (538)
Q Consensus 341 ~lG~~~i~l~~l~~ 354 (538)
+||++.+++++..-
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999997764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-16 Score=135.10 Aligned_cols=120 Identities=23% Similarity=0.460 Sum_probs=102.1
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~k 450 (538)
+|+|++++.|. .+.|+|+|++|+||+. .+..||||++.+.+ ..++
T Consensus 1 ~g~~~~~~~~~---------------------------~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~r 53 (131)
T cd04026 1 RGRIYLKISVK---------------------------DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQK 53 (131)
T ss_pred CcEEEEEEEEC---------------------------CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceec
Confidence 58999999885 4789999999999986 35789999999963 4579
Q ss_pred eecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEEE
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQ 530 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~ 530 (538)
|++++++.||.|||.|.|.+........|.++|||++. ++++++||++.++|.++... ....||+|.+.+.|+..
T Consensus 54 T~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~----~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~~ 128 (131)
T cd04026 54 TKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR----TTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEYY 128 (131)
T ss_pred ceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC----CCCcceeEEEEEeHHHhCcC-ccCceEECcCccccccc
Confidence 99999999999999999998764345689999999874 56889999999999999865 56899999998888653
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=138.67 Aligned_cols=93 Identities=33% Similarity=0.581 Sum_probs=81.6
Q ss_pred EEEEEEEEecCCCcCCCCC--------------CCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC-CCe
Q 046405 261 ILNVKVLRAMKLKKKDLIG--------------ASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE-YQA 325 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~ 325 (538)
.|.|+|++|++|+.+|..+ .+||||++.++++.. +|++++++.||+|||+|.|.+..+. .+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~---kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKV---KTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEee---ecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 689999999987654 8999999999999999999976543 578
Q ss_pred EEEEEEecCCCCCCCccEEEEEeCccCCCCC
Q 046405 326 LELQVYDWEKVGHHDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 326 L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
|.|+|||+|..++|++||++.+++.++...+
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999987653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-16 Score=133.36 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=96.8
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC----CCCCCeEEEEEc---CeeEEee
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK----YHTNPSARILFR---GEEKKTK 452 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~---~~~~kT~ 452 (538)
|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++. ...++|+
T Consensus 1 G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~ 55 (123)
T cd08390 1 GRLWFSVQYDLE-------------------------EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSK 55 (123)
T ss_pred CEEEEEEEECCC-------------------------CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEee
Confidence 899999999864 78999999999999753 468999999984 3456999
Q ss_pred cccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 453 RIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 453 v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
+++++.||+|||.|.|.+..... ...|.|+|||++. ++++++||++.++|+++........|++|.
T Consensus 56 v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 56 VKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR----FSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred eEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc----CCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99999999999999999864322 3579999999875 567899999999999998877778999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-16 Score=139.01 Aligned_cols=120 Identities=18% Similarity=0.306 Sum_probs=98.1
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC--CCCCCeEEEEEcC-----eeEEe
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK--YHTNPSARILFRG-----EEKKT 451 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~-----~~~kT 451 (538)
.|+|++++.|.|. .+.|.|+|++|+||+.. +.+||||++++.. ++++|
T Consensus 1 ~G~i~~sl~y~~~-------------------------~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT 55 (137)
T cd08409 1 LGDIQISLTYNPT-------------------------LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKT 55 (137)
T ss_pred CcEEEEEEEECCC-------------------------CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeec
Confidence 4999999999875 68899999999999763 5799999999854 35699
Q ss_pred ecccCCCCCcCcceEEEEecCCCCC-CeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCe
Q 046405 452 KRIKKNRDPRWEEEFQFTLEEPPTD-DKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNG 527 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 527 (538)
++++++.||+|||.|.|.+...+.. ..|.|+|+|++. ++++++||++.++......+....+|+.+..+++.
T Consensus 56 ~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~ 128 (137)
T cd08409 56 EVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG----VRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKE 128 (137)
T ss_pred ccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC----CCCcceEEEEEECCcccCCChHHHHHHHHHhCCCC
Confidence 9999999999999999999743333 589999999985 56889999999997665555556788887765443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-16 Score=138.02 Aligned_cols=109 Identities=36% Similarity=0.444 Sum_probs=90.9
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVY 331 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~ 331 (538)
....|.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 3457899999999999999998899999999999653 23457999999999999999999998643 3568999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
|++..++|++||++.+++.. .++....|+++.+
T Consensus 89 d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 89 DKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred eCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 99998899999999999986 3344556776543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=133.10 Aligned_cols=118 Identities=18% Similarity=0.269 Sum_probs=97.9
Q ss_pred ceEEEEEEeeeccCCCCCCCCCeEEEEEcCeeE-EeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 417 GGLLVVILHEAQDVEGKYHTNPSARILFRGEEK-KTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
..-|.|.|.+|++|+.+ .+|||++.+++... ||+++.++.||.|+|.|.|.+... ...++|.|+..+...+...+
T Consensus 10 ~~sL~v~V~EAk~Lp~~--~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK--KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP--VSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEEEccCCCCc--CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc--ccEEEEEEEEccCccccccC
Confidence 45789999999999985 58999999999886 999999999999999999986542 36799999766532221226
Q ss_pred CCccEEEEEecchhcccceeceEEEcCCCC-------------CeEEEEEEEEEeC
Q 046405 496 KETLGYIGINLADVVNNKRINEKYHLIDSK-------------NGRIQIELQWRAS 538 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-------------~G~i~l~~~wkp~ 538 (538)
+++||.+.|++.++..+...++||+|.+.. .++|+++++|+|+
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 799999999999999888899999998642 2699999999874
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=131.18 Aligned_cols=109 Identities=18% Similarity=0.338 Sum_probs=92.5
Q ss_pred EEEEEeeeccCCC---CCCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 420 LVVILHEAQDVEG---KYHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|.|+|++|++|+. .+.+||||++.++++. .||++++++.||.|||.|.|.+.. ....|.++|||++. +++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~~l~v~v~d~~~----~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP--GFHTVSFYVLDEDT----LSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC--CCCEEEEEEEECCC----CCC
Confidence 7899999999976 3578999999998764 599999999999999999999865 34689999999985 578
Q ss_pred CCccEEEEEecchhcccc-eeceEEEcCCCC-----CeEEEEEEE
Q 046405 496 KETLGYIGINLADVVNNK-RINEKYHLIDSK-----NGRIQIELQ 534 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~-----~G~i~l~~~ 534 (538)
|++||++.++++++.... ..++|++|.+.. .|+|++++.
T Consensus 76 d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999999999999887643 478999997632 699988764
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-16 Score=136.08 Aligned_cols=108 Identities=27% Similarity=0.396 Sum_probs=92.3
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCC-CCCceeeeecCCCCCceeeeEEEEEEeCC---------------CCCe
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDD-KLPSKKTTVKHRNLNPEWNEEFGLVVKDP---------------EYQA 325 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------------~~~~ 325 (538)
|+|+|++|++|+.+ ..|.+||||++++++. ....++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 67999999999988 7789999999999741 12346999999999999999999998765 4578
Q ss_pred EEEEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCC
Q 046405 326 LELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDP 370 (538)
Q Consensus 326 L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~ 370 (538)
|.|+|||++..+++++||++.+++.++........|++|.+...+
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~~ 124 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREAP 124 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCCC
Confidence 999999999888999999999999999877777889988665433
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-16 Score=135.33 Aligned_cols=99 Identities=34% Similarity=0.494 Sum_probs=86.4
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC----CCceeeeecCCCCCceeeeEEEEEEeCC----CCCeEEE
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK----LPSKKTTVKHRNLNPEWNEEFGLVVKDP----EYQALEL 328 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L~v 328 (538)
...+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.+
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 3467899999999999999888999999999996432 3457999999999999999999998653 2568999
Q ss_pred EEEecCCCCCCCccEEEEEeCccCCCC
Q 046405 329 QVYDWEKVGHHDKMGMNVIPLKDITPE 355 (538)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~l~~l~~~ 355 (538)
+|||++..++|++||++.++|+++...
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 999999999999999999999999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-16 Score=183.06 Aligned_cols=117 Identities=26% Similarity=0.541 Sum_probs=106.7
Q ss_pred CceEEEEEEeeeccCCCC-CCCCCeEEEEEcCe-eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 416 GGGLLVVILHEAQDVEGK-YHTNPSARILFRGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~-~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
-.|.|+|+|++|+||..+ +.+||||++++++. ++||++++++.||+|||.|+|.+.+++.+++++++|||++. |
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~----f 2053 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT----F 2053 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc----c
Confidence 468999999999999964 78999999999965 78999999999999999999999998777889999999985 5
Q ss_pred CCCCccEEEEEecchhcccceeceEEEcCC--CCCeE---EEEEEEEEe
Q 046405 494 HPKETLGYIGINLADVVNNKRINEKYHLID--SKNGR---IQIELQWRA 537 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~--~~~G~---i~l~~~wkp 537 (538)
+++.+|+++|+|.++..++.+++||+|.+ ++.|+ |+++++|+|
T Consensus 2054 -~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 -GKSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred -CCCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 45599999999999999999999999997 56899 999999987
|
|
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-16 Score=165.06 Aligned_cols=129 Identities=27% Similarity=0.512 Sum_probs=109.2
Q ss_pred eeEEEEEEEEecCCCcCCC------------------------------------------CCCCCcEEEEEEcCCCCCc
Q 046405 259 VGILNVKVLRAMKLKKKDL------------------------------------------IGASDPYVKLKLTDDKLPS 296 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~~ 296 (538)
.|.|.++|.+|++|+++|. .+++||||+|.+++++.
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv-- 90 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATL-- 90 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcce--
Confidence 5899999999999886321 24679999999976543
Q ss_pred eeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCC
Q 046405 297 KKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNE 376 (538)
Q Consensus 297 ~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~ 376 (538)
.||++++++.||+|||+|.|.+.++ ...|.|+|||+|.++ +++||++.+|++++..++..+.|+++..... +..
T Consensus 91 ~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp~ 164 (868)
T PLN03008 91 ARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KPP 164 (868)
T ss_pred eeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CCC
Confidence 5999999999999999999999886 468999999999986 5899999999999999999999999976433 235
Q ss_pred ccccEEEEEEEEEeecCCC
Q 046405 377 KSRGQVVVEVLYKPFKGDE 395 (538)
Q Consensus 377 ~~~G~l~l~l~~~p~~~~~ 395 (538)
+..|+|+++++|.|+....
T Consensus 165 k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 165 KAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCcEEEEEEEEEEccccc
Confidence 6678999999999997753
|
|
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-16 Score=131.03 Aligned_cols=102 Identities=22% Similarity=0.313 Sum_probs=88.5
Q ss_pred ceEEEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCC---CCCeEEEEEEEccCCCCCC
Q 046405 417 GGLLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPP---TDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~---~~~~l~v~V~d~~~~~g~~ 493 (538)
...|+|+|++|+||. .+.+||||++++++++++|++++++.||.|||.|.|.+.... ....|.++|+|++. +
T Consensus 3 ~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~----~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS----L 77 (111)
T ss_pred cEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc----c
Confidence 457899999999999 578999999999999999999999999999999999986532 13579999999975 5
Q ss_pred CCCCccEEEEEecchhccc---ceeceEEEcCC
Q 046405 494 HPKETLGYIGINLADVVNN---KRINEKYHLID 523 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~~ 523 (538)
++|++||++.++|+++... .....||+|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 6799999999999999765 34789999975
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-16 Score=138.19 Aligned_cols=108 Identities=30% Similarity=0.407 Sum_probs=89.3
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcC--CCCCceeeeecCCCCCceeeeEEEEEEeC--CCCCeEEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTD--DKLPSKKTTVKHRNLNPEWNEEFGLVVKD--PEYQALELQVY 331 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~ 331 (538)
....|.|.|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+||
T Consensus 11 ~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~ 90 (136)
T cd08405 11 NPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVM 90 (136)
T ss_pred cCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 345789999999999999988889999999999843 33345689999999999999999999753 23568999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
|++..++|++||++.+++.+. +...+.|.++.
T Consensus 91 d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 91 DKDRLSRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred ECCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 999999999999999999986 33445565554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=133.29 Aligned_cols=111 Identities=24% Similarity=0.443 Sum_probs=93.8
Q ss_pred EEEEEEeeeccCCCC---CCCCCeEEEEEcCe-------eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccC
Q 046405 419 LLVVILHEAQDVEGK---YHTNPSARILFRGE-------EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSS 488 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-------~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~ 488 (538)
.|+|+|++|+||+.. +.+||||++++++. .++|++++++.||.|||.|.|.+.. ....|.++|||++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP--REHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC--CCCEEEEEEEECCC
Confidence 478999999999863 57999999999765 4699999999999999999999864 34689999999985
Q ss_pred CCCCCCCCCccEEEEEecchhcccce------eceEEEcCCC-----CCeEEEEEEEE
Q 046405 489 RMGLLHPKETLGYIGINLADVVNNKR------INEKYHLIDS-----KNGRIQIELQW 535 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~L~~l~~~~~------~~~~~~L~~~-----~~G~i~l~~~w 535 (538)
++++++||++.++++++..... ..+||+|.+. ..|+|++++.|
T Consensus 79 ----~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 ----LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred ----CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 5689999999999999986432 4699999853 36999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-16 Score=136.69 Aligned_cols=121 Identities=20% Similarity=0.336 Sum_probs=98.6
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~k 450 (538)
.|+|.+++.|.|. .|.|.|+|++|++|+. .+.+||||++++.. ..++
T Consensus 1 ~G~l~~~l~y~~~-------------------------~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~k 55 (136)
T cd08402 1 LGDICFSLRYVPT-------------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKK 55 (136)
T ss_pred CcEEEEEeEEcCC-------------------------CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceee
Confidence 4999999999875 7899999999999986 35799999999952 2458
Q ss_pred eecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEE
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRI 529 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 529 (538)
|++++++.||.|||.|.|.+..... ...|.|+|||++. +++|++||++.+++... +....+|+++...++..+
T Consensus 56 T~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 56 TTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDR----IGKNDPIGKVVLGCNAT--GAELRHWSDMLASPRRPI 129 (136)
T ss_pred ccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCC----CCCCceeEEEEECCccC--ChHHHHHHHHHhCCCCee
Confidence 9999999999999999999864322 2479999999985 57899999999999863 445688988877655555
Q ss_pred E
Q 046405 530 Q 530 (538)
Q Consensus 530 ~ 530 (538)
.
T Consensus 130 ~ 130 (136)
T cd08402 130 A 130 (136)
T ss_pred e
Confidence 4
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=129.27 Aligned_cols=98 Identities=24% Similarity=0.294 Sum_probs=83.9
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC----CCeEEEEEEecCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE----YQALELQVYDWEK 335 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~~~ 335 (538)
-.|+|+|++|++|+ .|.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 47899999999998 4789999999999754 48999999999999999999986543 4689999999999
Q ss_pred CCCCCccEEEEEeCccCCCCCCc---eEEEec
Q 046405 336 VGHHDKMGMNVIPLKDITPEEPR---EMTLDL 364 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~~---~~~~~l 364 (538)
+++|++||++.++++++..+..+ ..|++|
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 98999999999999999876443 456665
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-16 Score=132.51 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=85.8
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEc--CCCCCceeeeecCCCC-CceeeeEEEEEEeCCC-CCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLT--DDKLPSKKTTVKHRNL-NPEWNEEFGLVVKDPE-YQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~--~~~~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~-~~~L~v~v~d 332 (538)
...|.|+|+|++|+||++.+..+.+||||++++- +....++||+++++|. ||.|||+|.|.+.... .-.|.++|||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d 90 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYS 90 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEe
Confidence 3568999999999999987656777999999984 3445578999999996 6999999999997543 3478899999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
++..+++++||++.++.++... ...++|.+.
T Consensus 91 ~~~~~~n~~IG~v~lG~~~~~~-~~~~hW~~m 121 (135)
T cd08692 91 RSSVRRKHFLGQVWISSDSSSS-EAVEQWKDT 121 (135)
T ss_pred CCCCcCCceEEEEEECCccCCc-hhhhhHHHH
Confidence 9989999999999999987432 234555554
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=131.14 Aligned_cols=116 Identities=19% Similarity=0.239 Sum_probs=93.8
Q ss_pred EEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCC--------CCCeEEEEEEEcc
Q 046405 419 LLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPP--------TDDKLHVEVISTS 487 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------~~~~l~v~V~d~~ 487 (538)
.|+|+|++|++|+. .+.+||||++++++.+++|++++++.||.|||.|.|.+...+ ....+.++|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 58999999999976 367999999999999999999999999999999999754321 1246999999998
Q ss_pred CCCCCCCCCCccEEEEE-ecchhcc---cceeceEEEcCCC--CCeEEEEEEEEEeC
Q 046405 488 SRMGLLHPKETLGYIGI-NLADVVN---NKRINEKYHLIDS--KNGRIQIELQWRAS 538 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i-~L~~l~~---~~~~~~~~~L~~~--~~G~i~l~~~wkp~ 538 (538)
. +++|++||++.+ ++..+.. .....+||+|... ..|+|.+++++.|+
T Consensus 82 ~----~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 S----VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred C----CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 5 568899999997 4443332 2346799999854 36999999999874
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-15 Score=129.27 Aligned_cols=118 Identities=28% Similarity=0.451 Sum_probs=93.7
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHH 339 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d 339 (538)
-.|+|+|.+|+ |...+..+.+||||+++++++ ..++|++++++.||.|||+|.|.+.. .+.|.|+|||++..+.|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 36899999998 555555788999999999865 24699999999999999999999854 57899999999999999
Q ss_pred CccEEEEEeCccCCCCCC-----ceEEEeccccCCCCCCCCCccccEEEEEE
Q 046405 340 DKMGMNVIPLKDITPEEP-----REMTLDLLKNMDPNDTRNEKSRGQVVVEV 386 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 386 (538)
++||++.++|.++..... ...|+++.+..+ .+....|+|++++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSENK----GSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCC----CcceeeeeEEEEe
Confidence 999999999999986532 224666643211 0357789998875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-15 Score=127.94 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=94.8
Q ss_pred ceEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 417 GGLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
.++++|+|++|++|... +.+||||++.++++.++|++++++.||+|||.|.|.+.+. ...|.|+|||++. +
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~i~V~d~~~----~ 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP--RSPIKIQVWNSNL----L 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC--CCEEEEEEEECCC----C
Confidence 46899999999999863 6899999999999999999999999999999999988763 5689999999874 3
Q ss_pred CCCCccEEEEEecchhcccceeceEEEcCCC-------CCeEEEEEEEEEe
Q 046405 494 HPKETLGYIGINLADVVNNKRINEKYHLIDS-------KNGRIQIELQWRA 537 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-------~~G~i~l~~~wkp 537 (538)
+|++||+++++++++. ....++|+|+.. ..|.|.+++...|
T Consensus 76 -~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 -CDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred -CCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 5899999999998753 345788999521 2699999988765
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.64 E-value=8e-16 Score=135.20 Aligned_cols=115 Identities=17% Similarity=0.298 Sum_probs=95.2
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC--e---eEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG--E---EKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~--~---~~k 450 (538)
+|+|.++++|.+. .+.|.|+|++|+||+. .+.+||||++++.. + ++|
T Consensus 1 ~G~l~~~l~y~~~-------------------------~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~k 55 (136)
T cd08404 1 RGELLLSLCYQPT-------------------------TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKK 55 (136)
T ss_pred CCeEEEEEEEeCC-------------------------CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEc
Confidence 5999999999754 6789999999999986 35789999999843 2 458
Q ss_pred eecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
|++++++.||.|||.|.|.+.... ....+.|+|||++. ++++++||++.+++.+ ......+|++|.+.
T Consensus 56 T~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~----~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 56 THVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR----VTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred CccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCC----CCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 999999999999999999986432 23468999999985 5789999999999998 34456899998765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-16 Score=137.21 Aligned_cols=106 Identities=32% Similarity=0.429 Sum_probs=88.4
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 332 (538)
...+.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 356789999999999999998899999999998543 23356899999999999999999998642 24679999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
++.++++++||++.+++.. .+.....|.++
T Consensus 92 ~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l 121 (136)
T cd08404 92 SDRVTKNEVIGRLVLGPKA--SGSGGHHWKEV 121 (136)
T ss_pred CCCCCCCccEEEEEECCcC--CCchHHHHHHH
Confidence 9999999999999999998 34445566655
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-15 Score=131.44 Aligned_cols=90 Identities=26% Similarity=0.483 Sum_probs=81.0
Q ss_pred eEEEEEEeeeccCCCC--CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 418 GLLVVILHEAQDVEGK--YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|.|+|+|++|+||+.. +.+||||+++++++..+|++++++.||+|||.|.|.+.++ ...+.++|||++. +++
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~----~~~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDT----FSK 75 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCC----CCC
Confidence 7899999999999753 5789999999999999999999999999999999999874 5789999999985 678
Q ss_pred CCccEEEEEecchhcccc
Q 046405 496 KETLGYIGINLADVVNNK 513 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~ 513 (538)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999987643
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-15 Score=130.38 Aligned_cols=115 Identities=18% Similarity=0.367 Sum_probs=91.0
Q ss_pred EEEEeeecc--CCC---CCCCCCeEEEEE--c---CeeEEeecccCCCCCcCcceEEEEecCCC-------CCCeEEEEE
Q 046405 421 VVILHEAQD--VEG---KYHTNPSARILF--R---GEEKKTKRIKKNRDPRWEEEFQFTLEEPP-------TDDKLHVEV 483 (538)
Q Consensus 421 ~v~v~~a~~--L~~---~~~~dpyv~v~~--~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~-------~~~~l~v~V 483 (538)
.++|..|++ |+. .+.+||||++++ . .++.||+++++|.||+|||.|.|.+.... ....|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 455666666 554 357999999997 2 24679999999999999999999996421 135799999
Q ss_pred EEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC---CCeEEEEEEEEEeC
Q 046405 484 ISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS---KNGRIQIELQWRAS 538 (538)
Q Consensus 484 ~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~---~~G~i~l~~~wkp~ 538 (538)
||++. ++++|++||++.++|+.+..+....+|++|.+. .+|++++++.-|.+
T Consensus 85 ~d~~~---f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 85 YHKGG---FLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREP 139 (155)
T ss_pred EeCCC---cccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence 99974 235799999999999999887778889998854 27999999987753
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.5e-16 Score=135.45 Aligned_cols=107 Identities=34% Similarity=0.529 Sum_probs=87.8
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcC--CCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTD--DKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 332 (538)
...|.|+|+|++|++|++.+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 45789999999999999999899999999999853 233456899999999999999999998542 23569999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
++..++|++||++.+++... ++....|.++.
T Consensus 91 ~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~~ 121 (134)
T cd08403 91 YDRVGHNELIGVCRVGPNAD--GQGREHWNEML 121 (134)
T ss_pred CCCCCCCceeEEEEECCCCC--CchHHHHHHHH
Confidence 99999999999999998733 34455566553
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=128.32 Aligned_cols=102 Identities=25% Similarity=0.401 Sum_probs=86.3
Q ss_pred CCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCC-
Q 046405 277 LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPE- 355 (538)
Q Consensus 277 ~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~- 355 (538)
..|.+||||+++++++. .++|++++++.||.|||+|.|.+.+...+.|.|+|||++.. +|++||++.++|+++...
T Consensus 9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999997643 35899999999999999999999877678899999999988 899999999999998653
Q ss_pred CCceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 356 EPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
.....|++|. +...|+|++++.|.|.
T Consensus 86 ~~~~~w~~L~----------~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLS----------GNGQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECC----------CCCCCEEEEEEEEecC
Confidence 3456788873 2457999999999884
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.7e-16 Score=135.73 Aligned_cols=116 Identities=18% Similarity=0.362 Sum_probs=94.7
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEc--C---eeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFR--G---EEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~--~---~~~k 450 (538)
+|+|.++++|.+. .+.|.|+|++|+||+. .+.+||||++++. + .+++
T Consensus 1 ~G~l~~sl~y~~~-------------------------~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~k 55 (136)
T cd08405 1 RGELLLSLCYNPT-------------------------ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKK 55 (136)
T ss_pred CcEEEEEEEEcCC-------------------------CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCcccccc
Confidence 5999999999865 7899999999999976 3579999999983 2 2458
Q ss_pred eecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 525 (538)
|++++++.||.|||.|.|.+.... ....|.|+|||++. ++++++||++.+++.+. +...++|+++...+
T Consensus 56 T~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~ 125 (136)
T cd08405 56 TVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDR----LSRNDLIGKIYLGWKSG--GLELKHWKDMLSKP 125 (136)
T ss_pred CcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCC----CCCCcEeEEEEECCccC--CchHHHHHHHHhCC
Confidence 999999999999999999986321 23579999999975 57889999999999875 33456777776543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=128.52 Aligned_cols=99 Identities=28% Similarity=0.439 Sum_probs=86.6
Q ss_pred EEEecCCCcCCCCCCCCcEEEEEEcCCC----CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCC----CC
Q 046405 266 VLRAMKLKKKDLIGASDPYVKLKLTDDK----LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEK----VG 337 (538)
Q Consensus 266 v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~----~~ 337 (538)
.++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.++|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4789999999988999999999997653 123699999999999999999998765556789999999997 78
Q ss_pred CCCccEEEEEeCccCCCCCCceEEEec
Q 046405 338 HHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+|++||++.++++++..+.....+++|
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 999999999999999988777788877
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.3e-16 Score=134.50 Aligned_cols=120 Identities=19% Similarity=0.344 Sum_probs=100.3
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcCe-----eEEe
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRGE-----EKKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~-----~~kT 451 (538)
|+|.+.++|.+. .+.|.|+|++|+||+. .+.+||||++++.+. .++|
T Consensus 1 G~i~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T 55 (134)
T cd00276 1 GELLLSLSYLPT-------------------------AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKT 55 (134)
T ss_pred CeEEEEEEeeCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecC
Confidence 889999999864 6889999999999986 357999999999653 4599
Q ss_pred ecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEEE
Q 046405 452 KRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQ 530 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~ 530 (538)
++++++.||.|||.|.|.+.... ....|.|+|||.+. ++++++||++.+++++ .+...++||+|..+++..|.
T Consensus 56 ~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~----~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~ 129 (134)
T cd00276 56 SVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS----VGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPIA 129 (134)
T ss_pred cceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC----CCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCceE
Confidence 99999999999999999987532 14689999999975 4678999999999999 45567999999887655544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-15 Score=128.00 Aligned_cols=107 Identities=23% Similarity=0.388 Sum_probs=88.4
Q ss_pred EEEEEeeeccCCCC---CCCCCeEEEEEc-CeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 420 LVVILHEAQDVEGK---YHTNPSARILFR-GEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|+|+|++|++|+.. +.+||||+++++ ...++|++++++.||.|||.|+|.+.. .+.|.++|||++. +++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~----~~~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKK----FKK 74 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCC----CCC
Confidence 78999999999863 579999999997 556799999999999999999999964 4789999999975 333
Q ss_pred --CCccEEEEEecchhcccc-eeceEEEcCCCC-------CeEEEEEE
Q 046405 496 --KETLGYIGINLADVVNNK-RINEKYHLIDSK-------NGRIQIEL 533 (538)
Q Consensus 496 --d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~-------~G~i~l~~ 533 (538)
|++||++.++++++.... ....||+|...+ .|+|.+++
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 689999999999998654 347899996442 46666654
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-15 Score=126.39 Aligned_cols=106 Identities=25% Similarity=0.507 Sum_probs=91.8
Q ss_pred eEEEEEEeeeccCCCC---CCCCCeEEEEEcCe-eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 418 GLLVVILHEAQDVEGK---YHTNPSARILFRGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
|.|+|+|++|++|+.. +.+||||+++++++ ..+|++++++.||.|||.|.|.+... .+.|.|+|||++. +
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~----~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEK----V 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCC----C
Confidence 6899999999999873 58999999999774 57999999999999999999998763 4689999999985 5
Q ss_pred CCCCccEEEEEecchhcccceeceEEEcCCCCCeEEE
Q 046405 494 HPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQ 530 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~ 530 (538)
++|++||++.++|.++..+ ..+.||.|.++..++..
T Consensus 75 ~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~ 110 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK-NEDGKYVEYDDEEERLK 110 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence 6889999999999999887 56899999988766654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-15 Score=132.08 Aligned_cols=110 Identities=25% Similarity=0.360 Sum_probs=90.3
Q ss_pred cCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC---CCceeeeecCCCCCceeeeEEEEEEeC--CCCCeEEEE
Q 046405 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK---LPSKKTTVKHRNLNPEWNEEFGLVVKD--PEYQALELQ 329 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~ 329 (538)
.....+.|.|+|++|+||+..+..|.+||||++++.+.. ..++||++++++.||+|||+|.|.+.. .....|.|+
T Consensus 10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~ 89 (138)
T cd08408 10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS 89 (138)
T ss_pred EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence 345678999999999999999988999999999996432 235699999999999999999999864 345789999
Q ss_pred EEecCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 330 VYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
|||++.++++++||++.+++.....+ ..+.|..+.
T Consensus 90 V~~~~~~~~~~~iG~v~l~~~~~~~~-~~~hW~~~l 124 (138)
T cd08408 90 VYNKRKMKRKEMIGWFSLGLNSSGEE-EEEHWNEMK 124 (138)
T ss_pred EEECCCCCCCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence 99999999999999999998755432 334565553
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.6e-15 Score=128.88 Aligned_cols=126 Identities=17% Similarity=0.233 Sum_probs=100.2
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCC
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~ 337 (538)
-...|.|.|++|++|+.++ +|||.+.+++... .||+++.++.||.|+|+|+|..... ...+.|.||+.+...
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcc
Confidence 3468999999999999865 8999999997654 5999999999999999999986443 467999998765322
Q ss_pred ----CCCccEEEEEeCccCCCCCCceEEEeccccCCCCC---CCCCccccEEEEEEEEEee
Q 046405 338 ----HHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPND---TRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 338 ----~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~G~l~l~l~~~p~ 391 (538)
++++||++.||+.++..+...+.|+++........ .......+.|++++.|.+.
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 57899999999999999888999999865321100 0012445799999999986
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-15 Score=133.96 Aligned_cols=108 Identities=37% Similarity=0.540 Sum_probs=88.9
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcC--CCCCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTD--DKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVY 331 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~ 331 (538)
..+.|.|+|+|++|++|+..+..|.+||||++++.+ +....++|++++++.||.|||+|.|.+.... ...|.|+||
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~ 90 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVL 90 (136)
T ss_pred cCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 346789999999999999999889999999999953 3334568999999999999999999986432 347999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
|++.+++|++||++.+++... +.....|.++.
T Consensus 91 d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~ 122 (136)
T cd08402 91 DYDRIGKNDPIGKVVLGCNAT--GAELRHWSDML 122 (136)
T ss_pred eCCCCCCCceeEEEEECCccC--ChHHHHHHHHH
Confidence 999999999999999999864 33445566554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=126.65 Aligned_cols=99 Identities=21% Similarity=0.409 Sum_probs=83.0
Q ss_pred eEEEEEEeeeccCCC---C-CCCCCeEEEEEcC---eeEEeecccCCCCCcCcceEEEEecCCC--CCCeEEEEEEEccC
Q 046405 418 GLLVVILHEAQDVEG---K-YHTNPSARILFRG---EEKKTKRIKKNRDPRWEEEFQFTLEEPP--TDDKLHVEVISTSS 488 (538)
Q Consensus 418 g~L~v~v~~a~~L~~---~-~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~ 488 (538)
|.|+|+|++|++|+. . +.+||||++++.+ ..++|++++++.||+|||.|.|.+.... ....|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 689999999999986 3 6799999999853 3469999999999999999999886421 24589999999985
Q ss_pred CCCCCCCCCccEEEEEecchhcccceeceEEEcCC
Q 046405 489 RMGLLHPKETLGYIGINLADVVNNKRINEKYHLID 523 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 523 (538)
+++|++||++.+++.++... ..|+++..
T Consensus 81 ----~~~dd~lG~~~i~l~~l~~~---~~~~~~~~ 108 (111)
T cd04041 81 ----FTADDRLGRVEIDLKELIED---RNWMGRRE 108 (111)
T ss_pred ----CCCCCcceEEEEEHHHHhcC---CCCCcccc
Confidence 56899999999999999854 47888754
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.9e-15 Score=126.55 Aligned_cols=110 Identities=17% Similarity=0.256 Sum_probs=92.1
Q ss_pred EEEEEEeeeccCCC---CCCCCCeEEEEEcCe---eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 419 LLVVILHEAQDVEG---KYHTNPSARILFRGE---EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
.|+|+|.+|++|+. .+.+||||++.+++. ..+|++++++.||.|||.|.|.+... ....|.|+|||++.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~---- 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSF---- 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCC----
Confidence 58899999999986 357899999998653 46999999999999999999999874 45789999999975
Q ss_pred CCCCCccEEEEEecchhccc---ceeceEEEcCCCCCeEEEEEEEE
Q 046405 493 LHPKETLGYIGINLADVVNN---KRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~~---~~~~~~~~L~~~~~G~i~l~~~w 535 (538)
++++++||++.++|.++... ...+.|++|.+ +|++++++.+
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~ 120 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSM 120 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEE
Confidence 46789999999999986542 24578999974 7999988876
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=128.21 Aligned_cols=107 Identities=32% Similarity=0.485 Sum_probs=89.7
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC---CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP---EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v 330 (538)
....+.|+|+|++|++|+..+..+.+||||++.+.+. .....+|++++++.||.|||+|.|..... ....+.++|
T Consensus 11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 11 DPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred eCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 3446889999999999999888889999999998432 23457999999999999999999963322 256899999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEe
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLD 363 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 363 (538)
||++.. .+++||++.++++++..++.+++++.
T Consensus 91 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 91 LDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 999988 89999999999999998877777654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-15 Score=132.92 Aligned_cols=117 Identities=21% Similarity=0.299 Sum_probs=93.1
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEEe
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT 451 (538)
|+|.++++|.|. .|.|.|+|++|+||+. .+.+||||++++.. .+++|
T Consensus 1 G~i~~~l~y~~~-------------------------~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT 55 (135)
T cd08410 1 GELLLSLNYLPS-------------------------AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKT 55 (135)
T ss_pred CcEEEEEEECCC-------------------------CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcC
Confidence 899999999875 6889999999999986 35799999999832 24699
Q ss_pred ecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCC
Q 046405 452 KRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKN 526 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 526 (538)
++++++.||+|||.|.|.+..... ...|.|+|||++. .+++++||++.|+....-. ....+|+.+..+.+
T Consensus 56 ~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~----~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~~~ 126 (135)
T cd08410 56 SCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNV----KSSNDFIGRIVIGQYSSGP-SETNHWRRMLNSQR 126 (135)
T ss_pred ccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCC----CCCCcEEEEEEEcCccCCc-hHHHHHHHHHhCCC
Confidence 999999999999999999864322 2369999999985 5789999999877644322 23578888876533
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.3e-15 Score=127.05 Aligned_cols=112 Identities=21% Similarity=0.392 Sum_probs=90.6
Q ss_pred eEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCC---
Q 046405 418 GLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMG--- 491 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g--- 491 (538)
+.|+|+|++|++|+.. +.+||||++++++..++|++++++.||.|||.|.|.+... ...|.|+|||++....
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCccccc
Confidence 3689999999999863 5789999999988888999999999999999999998653 4689999999874200
Q ss_pred ----CCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEE
Q 046405 492 ----LLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIEL 533 (538)
Q Consensus 492 ----~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~ 533 (538)
..+.+++||++.+++.++.. ....||+|...+ +|+|.+++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 01368999999999998743 357999998632 58888764
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-15 Score=130.70 Aligned_cols=108 Identities=30% Similarity=0.443 Sum_probs=85.5
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 332 (538)
...|.|+|+|++|++|+..+..|.+||||++++.+. ....++|+++++|.||.|||+|.|.+... ....|.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 356899999999999999998899999999998432 23457899999999999999999998532 24479999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+|..++|++||++.+........ ....|..+.
T Consensus 91 ~d~~~~~~~iG~~~l~~~~~~~~-~~~~W~~l~ 122 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQYSSGPS-ETNHWRRML 122 (135)
T ss_pred CCCCCCCcEEEEEEEcCccCCch-HHHHHHHHH
Confidence 99999999999998765433322 234555543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-15 Score=129.31 Aligned_cols=104 Identities=20% Similarity=0.231 Sum_probs=89.1
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-------ee
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-------EE 448 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-------~~ 448 (538)
.|+|.+++.|.+. .+.|+|+|++|++|+. .+.+||||++++.+ ..
T Consensus 2 ~G~l~~~l~y~~~-------------------------~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~ 56 (133)
T cd04009 2 YGVLTVKAYYRAS-------------------------EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPT 56 (133)
T ss_pred ceEEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccc
Confidence 6999999999754 6789999999999986 35799999999953 35
Q ss_pred EEeecccCCCCCcCcceEEEEecCCC---CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcc
Q 046405 449 KKTKRIKKNRDPRWEEEFQFTLEEPP---TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVN 511 (538)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~~---~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~ 511 (538)
+||++++++.||+|||.|.|.+.... ....|.++|||++. +++|++||++.++|+++..
T Consensus 57 ~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~----~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 57 PKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDL----LGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred cccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCC----CCCCcEeEEEEEeHHHCCc
Confidence 69999999999999999999987521 24589999999975 5679999999999999985
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=132.00 Aligned_cols=119 Identities=16% Similarity=0.299 Sum_probs=94.7
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEEe
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT 451 (538)
|+|.+++.|.|. .+.|+|+|++|++|+. .+.+||||++++.. ..++|
T Consensus 1 g~l~~~~~y~~~-------------------------~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT 55 (134)
T cd08403 1 GELMFSLCYLPT-------------------------AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKT 55 (134)
T ss_pred CeEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecC
Confidence 899999999865 7899999999999986 35799999999842 24589
Q ss_pred ecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEE
Q 046405 452 KRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRI 529 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 529 (538)
++++++.||.|||.|.|.+..... ...|.++|||++. ++++++||++.+++... +....+|+++...++-.+
T Consensus 56 ~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~----~~~~~~IG~~~l~~~~~--~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 56 SVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDR----VGHNELIGVCRVGPNAD--GQGREHWNEMLANPRKPI 128 (134)
T ss_pred CcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC----CCCCceeEEEEECCCCC--CchHHHHHHHHHCCCCee
Confidence 999999999999999999864212 2469999999985 57899999999998732 334578888765543333
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=133.50 Aligned_cols=109 Identities=28% Similarity=0.304 Sum_probs=91.1
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeC--CCCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKD--PEYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~--~~~~~L~v~v~d 332 (538)
...+.|.|+|++|+||+..+ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+.. .....|.|+|||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~ 90 (137)
T cd08409 12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ 90 (137)
T ss_pred CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence 34688999999999999888 7889999999986532 245689999999999999999999853 235689999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
++..+++++||++.++......++..++|.++.+
T Consensus 91 ~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 91 SGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred CCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 9999999999999999877766666667776644
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-15 Score=132.63 Aligned_cols=119 Identities=16% Similarity=0.291 Sum_probs=95.4
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC------eeEE
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG------EEKK 450 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~------~~~k 450 (538)
|+|.+++.|.+. .+.|.|+|++|+||+. .+.+||||++++.. .++|
T Consensus 2 ~ei~~sL~Y~~~-------------------------~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~k 56 (138)
T cd08408 2 PELLLGLEYNAL-------------------------TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSK 56 (138)
T ss_pred CeEEEEeEEcCC-------------------------CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeecc
Confidence 789999999865 7899999999999986 35789999999942 1359
Q ss_pred eecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeE
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGR 528 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~ 528 (538)
|++++++.||+|||+|.|.+.... ....|.|.|+|.+. ++++++||++.+++...-. +...+|+.+..+++-.
T Consensus 57 T~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~----~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~~~~ 130 (138)
T cd08408 57 TSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRK----MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESKGQQ 130 (138)
T ss_pred ceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCC----CCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCCCCE
Confidence 999999999999999999997532 24589999999985 5789999999999875432 2346888876554433
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-14 Score=121.82 Aligned_cols=95 Identities=27% Similarity=0.424 Sum_probs=75.1
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEec------
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDW------ 333 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~------ 333 (538)
|.|+|++|+||+ +.+||||++.+++.. ....+|+++++|+||+|||+|.|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 689999999996 458999999997532 345799999999999999999999963 67999999998
Q ss_pred -CCCCCCCccEEEEEeCc--cCCCCCCceEEEe
Q 046405 334 -EKVGHHDKMGMNVIPLK--DITPEEPREMTLD 363 (538)
Q Consensus 334 -~~~~~d~~lG~~~i~l~--~l~~~~~~~~~~~ 363 (538)
|..+.|+++|++.+.|. .+.....+...+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~ 106 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVIS 106 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEE
Confidence 45678999988877765 4444433443343
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-15 Score=132.35 Aligned_cols=104 Identities=14% Similarity=0.296 Sum_probs=85.4
Q ss_pred ceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEcc
Q 046405 417 GGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTS 487 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~ 487 (538)
.+.|.|+|++|+||+. .+.+||||++++.+ ..++|++++++.||+|||.|.|.+..... ...|.++|||++
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 7899999999999986 35799999999953 24699999999999999999999875322 357999999987
Q ss_pred CCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCC
Q 046405 488 SRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKN 526 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 526 (538)
. .+++++||.+.+++.. .++...+||++...++
T Consensus 92 ~----~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~ 124 (133)
T cd08384 92 I----GKSNDYIGGLQLGINA--KGERLRHWLDCLKNPD 124 (133)
T ss_pred C----CCCccEEEEEEEecCC--CCchHHHHHHHHhCCC
Confidence 5 4678999999999985 3445679998876543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-15 Score=127.00 Aligned_cols=93 Identities=28% Similarity=0.397 Sum_probs=81.2
Q ss_pred CceEEEEEEeeeccCCC--CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 416 GGGLLVVILHEAQDVEG--KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~--~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
..|.|+|+|++|++|+. .+.+||||+++++++.+||++++++.||+|||.|.|.....+..+.|.|+|||++. +
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~----~ 101 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN----G 101 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC----C
Confidence 46899999999999975 35789999999999999999999999999999999985443356799999999986 5
Q ss_pred CCCCccEEEEEecchhccc
Q 046405 494 HPKETLGYIGINLADVVNN 512 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~ 512 (538)
++|++||++.++|.....+
T Consensus 102 s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 102 WDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCCCeeEEEEEEecCCcee
Confidence 7899999999999987754
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=125.04 Aligned_cols=104 Identities=28% Similarity=0.471 Sum_probs=90.5
Q ss_pred eEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccC-CCCCcCcceEEEEecCCC--CCCeEEEEEEEccCCCC
Q 046405 418 GLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKK-NRDPRWEEEFQFTLEEPP--TDDKLHVEVISTSSRMG 491 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~g 491 (538)
|.|+|+|++|++|+.. +.+||||++++++..++|++.++ +.||.|||.|.|.+.... ....|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~--- 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN--- 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc---
Confidence 6799999999999863 57999999999988889998875 899999999999998742 24689999999975
Q ss_pred CCCCCCccEEEEEecchhcccceeceEEEcCCCC
Q 046405 492 LLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525 (538)
Q Consensus 492 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 525 (538)
+++|++||++.++|.++..++..+.||+|...+
T Consensus 78 -~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~ 110 (124)
T cd04049 78 -FSDDDFIGEATIHLKGLFEEGVEPGTAELVPAK 110 (124)
T ss_pred -CCCCCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence 567899999999999999888889999998653
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.9e-15 Score=127.71 Aligned_cols=106 Identities=35% Similarity=0.543 Sum_probs=91.5
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC-CCCeEEEEEEecCCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP-EYQALELQVYDWEKV 336 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-~~~~L~v~v~d~~~~ 336 (538)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 899999999999999888889999999999642 22356999999999999999999998654 256899999999988
Q ss_pred CCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 337 GHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
+++++||++.++++++... ....|++|..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8999999999999999865 6778888743
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-16 Score=150.56 Aligned_cols=107 Identities=34% Similarity=0.550 Sum_probs=92.4
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCC-CCeEEEEEEecC
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPE-YQALELQVYDWE 334 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~~ 334 (538)
....|+|+|.+|+||.++|.+|.|||||++.+-+.. ..+++|++++.++||+|||+|.|.+.... ...|.|+|||+|
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 456899999999999999999999999999995533 34569999999999999999999986443 678999999999
Q ss_pred CCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 335 KVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+.+++||+|..++.+++|... +.+-|+.|+
T Consensus 258 rTsRNDFMGslSFgisEl~K~-p~~GWyKlL 287 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKA-PVDGWYKLL 287 (683)
T ss_pred ccccccccceecccHHHHhhc-chhhHHHHh
Confidence 999999999999999999876 445566664
|
|
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=122.58 Aligned_cols=109 Identities=20% Similarity=0.306 Sum_probs=85.6
Q ss_pred EEEEEeeeccCCCCCCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCC
Q 046405 420 LVVILHEAQDVEGKYHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKE 497 (538)
Q Consensus 420 L~v~v~~a~~L~~~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~ 497 (538)
|.|+|++|+||+..+.+||||+++++++. ++|+++++ .||.|||.|.|.+..... ...+.+.++|++. ...+.
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~----~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS----KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc----CCCee
Confidence 78999999999987889999999998864 69999989 999999999999976321 2367778888763 34566
Q ss_pred ccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEE
Q 046405 498 TLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 498 ~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 535 (538)
.+|.+.+.. +..+...++||+|.+.. .|+|+++++|
T Consensus 77 ~~g~v~l~~--~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVALSK--LDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEecC--cCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 677666554 44456678999998642 6999999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-15 Score=131.15 Aligned_cols=107 Identities=36% Similarity=0.448 Sum_probs=91.2
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEEec
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVYDW 333 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~ 333 (538)
..+.|.|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+.... ...|.|+|||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 458999999999999998888899999999996542 33468999999999999999999986543 57899999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
+..+++++||++.+++++ .+...+.|+++..
T Consensus 92 ~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 92 DSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred CCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 988899999999999999 4556677777754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-14 Score=121.34 Aligned_cols=114 Identities=24% Similarity=0.384 Sum_probs=87.9
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEEecCCCCCC
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVYDWEKVGHH 339 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~~~~~~d 339 (538)
|+|+|++|++|+.. |.+||||++++++.. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+..+++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999998643 358999888 99999999999987643 35678888888766566
Q ss_pred CccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 340 DKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
..+|++. +..+..+...+.|++|...- ......|+|++.+.|
T Consensus 76 ~~~g~v~--l~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVA--LSKLDLGQGKDEWFPLTPVD-----PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEE--ecCcCCCCcceeEEECccCC-----CCCCcCceEEEEEEC
Confidence 6666654 55555566778899875421 124678999999976
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.57 E-value=6e-14 Score=121.95 Aligned_cols=119 Identities=27% Similarity=0.389 Sum_probs=93.9
Q ss_pred EEEEEEEEecCCCcCC--CCCCCCcEEEEEEcCCC---CCceeeeecCCCC-CceeeeEEEEEEeCCCCCeEEEEEEecC
Q 046405 261 ILNVKVLRAMKLKKKD--LIGASDPYVKLKLTDDK---LPSKKTTVKHRNL-NPEWNEEFGLVVKDPEYQALELQVYDWE 334 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~~~~L~v~v~d~~ 334 (538)
.|+|+|++|+||+..+ ..+.+||||++++.+.. ..+++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999995432 3457899887765 9999999999998766678999999999
Q ss_pred CCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 335 KVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
.. ++++||++.++++++..+. .+++|... ..+....|.|.+.+++
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~-----~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDS-----KGEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCC-----CCCCCcceeEEEEEEE
Confidence 87 8999999999999996542 34555321 1113456888888764
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=125.02 Aligned_cols=109 Identities=18% Similarity=0.289 Sum_probs=90.0
Q ss_pred EEEEEEeeeccCCC---CCCCCCeEEEEEcC-eeEEeeccc-CCCCCcCcceEEEEecCCC---CCCeEEEEEEEccCCC
Q 046405 419 LLVVILHEAQDVEG---KYHTNPSARILFRG-EEKKTKRIK-KNRDPRWEEEFQFTLEEPP---TDDKLHVEVISTSSRM 490 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-~~~kT~v~~-~t~nP~wne~f~f~v~~~~---~~~~l~v~V~d~~~~~ 490 (538)
.|+|+|++|++|+. .+.+||||++++++ .+++|++.+ ++.||.|||.|.|.+.... ....|.++|+|++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-- 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-- 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC--
Confidence 37899999999986 35799999999988 778999875 5899999999999997641 15789999999975
Q ss_pred CCCCCCCccEEEEEecchhcccce-----eceEEEcCCC---CCeEEEE
Q 046405 491 GLLHPKETLGYIGINLADVVNNKR-----INEKYHLIDS---KNGRIQI 531 (538)
Q Consensus 491 g~~~~d~~lG~~~i~L~~l~~~~~-----~~~~~~L~~~---~~G~i~l 531 (538)
+++|++||++.++|.++..+.. ...||+|.+. ..|.|++
T Consensus 79 --~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 79 --SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred --CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 4678999999999999997553 3689999864 3577653
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=122.19 Aligned_cols=96 Identities=27% Similarity=0.535 Sum_probs=79.8
Q ss_pred EEEEEecCCCcCCCCCCCCcEEEEEEcCCC---CCceeeeecCCCCCceeeeEEEEEEeCCC----CCeEEEEEEecCCC
Q 046405 264 VKVLRAMKLKKKDLIGASDPYVKLKLTDDK---LPSKKTTVKHRNLNPEWNEEFGLVVKDPE----YQALELQVYDWEKV 336 (538)
Q Consensus 264 V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~~~~ 336 (538)
+-.++|++|+..|..|.+||||++++.++. ...++|++++++.||+|| +|.|.+.... .+.|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 345699999999999999999999986542 234799999999999999 6888764322 57899999999999
Q ss_pred CCCCccEEEEEeCccCCCCCCceE
Q 046405 337 GHHDKMGMNVIPLKDITPEEPREM 360 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~~~~~~~~ 360 (538)
++|++||++.++++++..++..+.
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~~~~~ 106 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSSPLEF 106 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCCCceE
Confidence 999999999999999986654443
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-14 Score=124.71 Aligned_cols=102 Identities=28% Similarity=0.375 Sum_probs=87.8
Q ss_pred EEEEEeeeccCCCC--CCCCCeEEEEEc----CeeEEeecccCCCCCcCcceEEEEecCCC--------------CCCeE
Q 046405 420 LVVILHEAQDVEGK--YHTNPSARILFR----GEEKKTKRIKKNRDPRWEEEFQFTLEEPP--------------TDDKL 479 (538)
Q Consensus 420 L~v~v~~a~~L~~~--~~~dpyv~v~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------------~~~~l 479 (538)
|+|+|++|+||+.. +.+||||+++++ +..++|++++++.||.|||.|.|.+.... ....+
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 57899999999853 689999999998 66789999999999999999999987641 24589
Q ss_pred EEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC
Q 046405 480 HVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525 (538)
Q Consensus 480 ~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 525 (538)
.|+|||++. ++++++||++.++|.++........||+|...+
T Consensus 81 ~i~V~d~~~----~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 81 RVELWHASM----VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEcCCc----CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 999999985 467999999999999998776779999998653
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-14 Score=151.15 Aligned_cols=98 Identities=17% Similarity=0.432 Sum_probs=86.5
Q ss_pred CCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhccc
Q 046405 434 YHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN 512 (538)
Q Consensus 434 ~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~ 512 (538)
+.+||||+|.+++++ .||++++++.||+|||.|.|.|.+. ...|.++|+|++. ++ ++.||.+.|+|+++..+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~----~g-aD~IG~a~IPL~~L~~G 147 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDV----FG-AQIIGTAKIPVRDIASG 147 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCc----cC-CceeEEEEEEHHHcCCC
Confidence 468999999998765 4999999999999999999999874 4689999999885 44 68999999999999998
Q ss_pred ceeceEEEcCCCC------CeEEEEEEEEEeC
Q 046405 513 KRINEKYHLIDSK------NGRIQIELQWRAS 538 (538)
Q Consensus 513 ~~~~~~~~L~~~~------~G~i~l~~~wkp~ 538 (538)
...+.|++|.+.. +|+|+++++|+|+
T Consensus 148 e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 148 ERISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred CceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 8889999998652 5899999999995
|
|
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-14 Score=120.62 Aligned_cols=106 Identities=19% Similarity=0.312 Sum_probs=87.7
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcC-----eeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRG-----EEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~k 450 (538)
.|+|++++.|.+. .+.|+|+|++|++|+.. +.+||||++++.+ ...+
T Consensus 1 ~G~~~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~r 55 (123)
T cd04035 1 LGTLEFTLLYDPA-------------------------NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLR 55 (123)
T ss_pred CcEEEEEEEEeCC-------------------------CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCcee
Confidence 4899999999865 68899999999999862 5789999999842 3569
Q ss_pred eecccCCCCCcCcceEEEEecCC--CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccce
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEP--PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKR 514 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~ 514 (538)
|++++++.||.|||.|.|..... .....+.++|||++. + ++++||++.++|+++..++.
T Consensus 56 T~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~----~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 56 TKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR----F-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred eeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC----c-CCeeEEEEEEEcccCCCCcc
Confidence 99999999999999999963321 123589999999975 4 78999999999999987653
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=119.66 Aligned_cols=108 Identities=23% Similarity=0.448 Sum_probs=88.7
Q ss_pred EEEEEEeeeccCCC--CCCCCCeEEEEEcCe-eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 419 LLVVILHEAQDVEG--KYHTNPSARILFRGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 419 ~L~v~v~~a~~L~~--~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
.|+|+|.+|+.+.. .+.+||||+++++++ .++|++++++.||.|||.|.|.+.. .+.|.|+|||++. ++.
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~----~~~ 75 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHT----LKA 75 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCC----CCC
Confidence 58899999984433 357999999999887 7899999999999999999999864 3789999999985 568
Q ss_pred CCccEEEEEecchhcccce-----eceEEEcCCCC------CeEEEEEE
Q 046405 496 KETLGYIGINLADVVNNKR-----INEKYHLIDSK------NGRIQIEL 533 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~~-----~~~~~~L~~~~------~G~i~l~~ 533 (538)
|++||++.++|.++..+.. ...|++|.... .|++.+++
T Consensus 76 ~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 76 DVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999999986432 34589996443 68888765
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-15 Score=140.09 Aligned_cols=222 Identities=25% Similarity=0.387 Sum_probs=165.7
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEE--EEEeCCC-CCeEEEEEE
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFG--LVVKDPE-YQALELQVY 331 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~--f~v~~~~-~~~L~v~v~ 331 (538)
.....+..++.+|++|+.++..+..|||++..+.+. +..+.+|++..+++||.|+|+-. +...+.. ...+++.|.
T Consensus 90 ~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vc 169 (362)
T KOG1013|consen 90 SESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVC 169 (362)
T ss_pred hhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeec
Confidence 445688999999999999999999999999999653 23345788999999999997644 3343322 456788999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCC--CCCCCCCccccEEEEEEEEEeecCCCCCCCCCCCCCccCC
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMD--PNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKA 409 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~ 409 (538)
|.+.+..++++|+..+++..+...+.+.+..-|.+.+. ..+......+|++.+++.|...
T Consensus 170 dn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~------------------ 231 (362)
T KOG1013|consen 170 DNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSST------------------ 231 (362)
T ss_pred cCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcC------------------
Confidence 99999999999999999999988765332211122221 1122224678999999977543
Q ss_pred CCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcCe-----eEEeecccCCCCCcCcceEEEEecCCC-CCCeEE
Q 046405 410 PEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRGE-----EKKTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLH 480 (538)
Q Consensus 410 ~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~ 480 (538)
..-+.+++.+|..|.. ++.+||||+.++... ++||.+.++|.||+||+.|.|.+.... ...++.
T Consensus 232 -------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ 304 (362)
T KOG1013|consen 232 -------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVA 304 (362)
T ss_pred -------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEE
Confidence 4567788888888865 468999999998532 459999999999999999999997543 245899
Q ss_pred EEEEEccCCCCCCCCCCccEEEEEecc
Q 046405 481 VEVISTSSRMGLLHPKETLGYIGINLA 507 (538)
Q Consensus 481 v~V~d~~~~~g~~~~d~~lG~~~i~L~ 507 (538)
|.|+|++.. .+.+.+|-....+.
T Consensus 305 lsvgd~~~G----~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 305 LSVGDYDIG----KSNDSIGGSMLGGY 327 (362)
T ss_pred EeecccCCC----cCccCCCccccccc
Confidence 999999853 35677776655543
|
|
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.3e-14 Score=118.66 Aligned_cols=100 Identities=26% Similarity=0.356 Sum_probs=86.7
Q ss_pred EEEEEeeeccCCCC---CCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 420 LVVILHEAQDVEGK---YHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|+|+|++|++|+.. +.+||||++.+++.. ++|+++.++.||.|||.|.|.+... ....+.++|||++. +++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~----~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDR----GGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCC----CCC
Confidence 57899999999863 578999999997644 6999999999999999999999764 45789999999975 568
Q ss_pred CCccEEEEEecchhcccceeceEEEcCCC
Q 046405 496 KETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 496 d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
+++||++.+++.++..+.....|++|.+.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred CCceEEEEEEHHHcCCCCcEEEEEECcCC
Confidence 89999999999999887778999999854
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-14 Score=123.64 Aligned_cols=97 Identities=23% Similarity=0.376 Sum_probs=83.1
Q ss_pred CCceEEEEEEeeeccCCC---CCCCCCeEEEEEcCe-----------------------------eEEeecccCCCCCcC
Q 046405 415 EGGGLLVVILHEAQDVEG---KYHTNPSARILFRGE-----------------------------EKKTKRIKKNRDPRW 462 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~-----------------------------~~kT~v~~~t~nP~w 462 (538)
...+.|.|+|++|+||.. .+.+||||++.+... .++|++++++.||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 458999999999999976 368999999998531 258999999999999
Q ss_pred cceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEc
Q 046405 463 EEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHL 521 (538)
Q Consensus 463 ne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 521 (538)
||.|.|.+... ....|.|+|||++ +++||++.++++++.. ...++||+|
T Consensus 105 nE~F~f~v~~~-~~~~L~i~V~D~d--------d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDV-SNDQLHLDIWDHD--------DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccC-CCCEEEEEEEecC--------CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 99999999764 4578999999985 5899999999999984 457999987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=118.62 Aligned_cols=111 Identities=18% Similarity=0.327 Sum_probs=86.8
Q ss_pred EEEEEEeeeccCCC--CCCCCCeEEEEEcC-------------eeEEeecccCCCCCcC-cceEEEEecCCCCCCeEEEE
Q 046405 419 LLVVILHEAQDVEG--KYHTNPSARILFRG-------------EEKKTKRIKKNRDPRW-EEEFQFTLEEPPTDDKLHVE 482 (538)
Q Consensus 419 ~L~v~v~~a~~L~~--~~~~dpyv~v~~~~-------------~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~v~ 482 (538)
...|++++|+||+. .+.+||||++++.. +.++|++++++.||+| ||.|.|.+.. ++.|.++
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEEE
Confidence 35788999999975 26899999999953 3579999999999999 9999999853 4689999
Q ss_pred EEEccCCCCCCCCCCccEEEEEecchhcccc---eeceEEEcCCCC-----CeEEEEEE
Q 046405 483 VISTSSRMGLLHPKETLGYIGINLADVVNNK---RINEKYHLIDSK-----NGRIQIEL 533 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~---~~~~~~~L~~~~-----~G~i~l~~ 533 (538)
|+|++.. +....|++||++.+++.+++... ....||+|.... +|+|.+++
T Consensus 79 V~D~~~~-~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAK-SRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCC-CCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9997642 11113799999999999998653 357899997542 46666654
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-14 Score=141.45 Aligned_cols=121 Identities=23% Similarity=0.460 Sum_probs=102.7
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----e
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----E 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~ 447 (538)
...+|+|.+.+... ...|+|+|.+|+||.+ .|.+||||++.+-. .
T Consensus 165 tE~RGrl~l~~~~~---------------------------~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~s 217 (683)
T KOG0696|consen 165 TERRGRLYLEAHIK---------------------------RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNES 217 (683)
T ss_pred hhhcceEEEEEEec---------------------------CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchh
Confidence 56789999988552 5689999999999976 57899999999832 3
Q ss_pred eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCe
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNG 527 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 527 (538)
++||++++.++||+|||+|+|.+...+....|.|+|||+++ .++++++|+.+..++++..+. .+.||.|.....|
T Consensus 218 KqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr----TsRNDFMGslSFgisEl~K~p-~~GWyKlLsqeEG 292 (683)
T KOG0696|consen 218 KQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR----TSRNDFMGSLSFGISELQKAP-VDGWYKLLSQEEG 292 (683)
T ss_pred hhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc----cccccccceecccHHHHhhcc-hhhHHHHhhhhcC
Confidence 46999999999999999999999876667789999999997 589999999999999998765 4889998766555
Q ss_pred E
Q 046405 528 R 528 (538)
Q Consensus 528 ~ 528 (538)
+
T Consensus 293 E 293 (683)
T KOG0696|consen 293 E 293 (683)
T ss_pred c
Confidence 4
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.51 E-value=7e-14 Score=111.82 Aligned_cols=85 Identities=34% Similarity=0.608 Sum_probs=76.4
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCc
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~ 341 (538)
|+|+|++|+||+..+..+..||||++++++.....++|+++.++.+|.|+|+|.|.+..+..+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998755445799999999999999999999877777779999999999988999
Q ss_pred cEEEE
Q 046405 342 MGMNV 346 (538)
Q Consensus 342 lG~~~ 346 (538)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-14 Score=164.13 Aligned_cols=123 Identities=23% Similarity=0.378 Sum_probs=104.2
Q ss_pred cCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC-CCeEEEEEEec
Q 046405 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE-YQALELQVYDW 333 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~ 333 (538)
...-.|.|+|+|++|+||. +..|.+||||++.++++.. +||++++++.||+|||+|.|.+.++. .+.|+++|||+
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEec
Confidence 3455899999999999998 4478999999999996643 48999999999999999999998875 46799999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccE---EEEEEEEEe
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQ---VVVEVLYKP 390 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~---l~l~l~~~p 390 (538)
|.+++ +.+|.+.+++.++..++....|++|.+ +++..|+ |++++.|.+
T Consensus 2051 d~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccCC-CCCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEEecC
Confidence 99854 599999999999998888888888753 1455677 999998864
|
|
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-13 Score=111.51 Aligned_cols=98 Identities=21% Similarity=0.304 Sum_probs=73.4
Q ss_pred EEEEEeeeccCCCCCCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCC---C
Q 046405 420 LVVILHEAQDVEGKYHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRM---G 491 (538)
Q Consensus 420 L~v~v~~a~~L~~~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~---g 491 (538)
|.|+|++|+||++ .+||||+++++. ...||+++++|.||+|||.|+|.+.. ...|.+.|||++... .
T Consensus 1 L~V~V~~A~~L~~--~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQ--SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCC--CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEccccccccc
Confidence 5799999999974 599999999863 24699999999999999999999964 468999999984110 1
Q ss_pred CCCCCCccEEEEEecc--hhcccceeceEEEcC
Q 046405 492 LLHPKETLGYIGINLA--DVVNNKRINEKYHLI 522 (538)
Q Consensus 492 ~~~~d~~lG~~~i~L~--~l~~~~~~~~~~~L~ 522 (538)
..+.|+.+|...+.|+ .+..++.....+.|.
T Consensus 76 ~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~ 108 (118)
T cd08686 76 GEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN 108 (118)
T ss_pred ccCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence 1467899977776664 343444344455554
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.4e-13 Score=137.33 Aligned_cols=134 Identities=20% Similarity=0.262 Sum_probs=113.6
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcCe---eE
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRGE---EK 449 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~---~~ 449 (538)
....|+|.+++.|... ...|.|+|.+|+||+.. +.+||||++++... +.
T Consensus 150 ~~~~G~l~fsl~Yd~~-------------------------~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~ 204 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDFE-------------------------LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKF 204 (421)
T ss_pred ceeeeeEEEEEEeccc-------------------------CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcc
Confidence 5678999999999754 78899999999999874 46899999999653 45
Q ss_pred EeecccCCCCCcCcceEEEEecCC-CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC----
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEP-PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS---- 524 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~-~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~---- 524 (538)
+|++.++|+||+|||.|.|.+... .....|.+.|||.++ |+++++||.+.++|..+........|.++...
T Consensus 205 kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr----fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~ 280 (421)
T KOG1028|consen 205 KTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR----FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS 280 (421)
T ss_pred eeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC----cccccEEEEEEecCccccccccceeeeccccccCCc
Confidence 999999999999999999997643 234689999999986 88999999999999988776667789999764
Q ss_pred --CCeEEEEEEEEEeC
Q 046405 525 --KNGRIQIELQWRAS 538 (538)
Q Consensus 525 --~~G~i~l~~~wkp~ 538 (538)
..|+|.+.++|.|+
T Consensus 281 ~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 281 EELAGELLLSLCYLPT 296 (421)
T ss_pred ccccceEEEEEEeecC
Confidence 13799999999885
|
|
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-13 Score=116.98 Aligned_cols=88 Identities=18% Similarity=0.319 Sum_probs=76.3
Q ss_pred EEEEEEeeeccCCC---CCCCCCeEEEEEcCee--EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 419 LLVVILHEAQDVEG---KYHTNPSARILFRGEE--KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 419 ~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~--~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
+|+|+|++|++|+. .+.+||||++++++.. .||++++++.||+|||.|.|.+..+ ..+.|.++|||++. +
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~----~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDL----L 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCC----C
Confidence 47899999999986 3589999999998865 4788899999999999999998653 56789999999975 5
Q ss_pred CCCCccEEEEEecchhcc
Q 046405 494 HPKETLGYIGINLADVVN 511 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~ 511 (538)
++|++||++.++|++...
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 689999999999998764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.7e-13 Score=113.92 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=80.8
Q ss_pred EeeeccCCC---CCCCCCeEEEEEcCee-------EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 424 LHEAQDVEG---KYHTNPSARILFRGEE-------KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 424 v~~a~~L~~---~~~~dpyv~v~~~~~~-------~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
.++|++|+. .+.+||||++++.+.. ++|++++++.||+|||.|.|.+... ..+.+.++|||++...+.+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~-~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE-EVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeE-eeeEEEEEEEEecCCcCCC
Confidence 378999976 3579999999997753 6999999999999999999987542 4568999999998510004
Q ss_pred CCCCccEEEEEecchhcccceeceEEEcCC
Q 046405 494 HPKETLGYIGINLADVVNNKRINEKYHLID 523 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 523 (538)
+++++||++.+++++++.+.....|++|..
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 689999999999999998777788999943
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-12 Score=111.02 Aligned_cols=108 Identities=21% Similarity=0.321 Sum_probs=88.0
Q ss_pred EEEEEEeeeccCCC-----CCCCCCeEEEEEc------CeeEEeecccCCC-CCcCcceEEEEecCCCCCCeEEEEEEEc
Q 046405 419 LLVVILHEAQDVEG-----KYHTNPSARILFR------GEEKKTKRIKKNR-DPRWEEEFQFTLEEPPTDDKLHVEVIST 486 (538)
Q Consensus 419 ~L~v~v~~a~~L~~-----~~~~dpyv~v~~~------~~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
.|+|+|++|+||+. .+..||||++++. ....+|++++++. ||.|||.|.|.+... ....|.++|+|+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEEEeC
Confidence 68999999999975 3478999999994 3457999988775 999999999999863 446799999999
Q ss_pred cCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC-----CCeEEEEEEEE
Q 046405 487 SSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS-----KNGRIQIELQW 535 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~w 535 (538)
+. . ++++||++.++|+++..+ .+|++|.+. ..|+|.++++.
T Consensus 82 ~~----~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DS----G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CC----C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 74 3 789999999999998543 478898753 25888888775
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.1e-13 Score=135.44 Aligned_cols=122 Identities=28% Similarity=0.464 Sum_probs=100.5
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCC
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKV 336 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~ 336 (538)
+=...++++|++|.+|..+|..|++||||.+.++..+ +||+++...+||+|||.|+|..++. ++.++++|||+|..
T Consensus 292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktk---rrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~d 367 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTK---RRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDND 367 (1283)
T ss_pred ccceeeEEeeeecccceecccCCCCCCcEEEeecccc---hhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCccc
Confidence 3457899999999999999999999999999998655 4899999999999999999999886 78999999998742
Q ss_pred -----------CCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 337 -----------GHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 337 -----------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
.+|||+|+..|.++.|..+ -+.|+.|.++.+. +..+|.|++.+...
T Consensus 368 lksklrqkl~resddflgqtvievrtlsge--mdvwynlekrtdk-----savsgairlhisve 424 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDK-----SAVSGAIRLHISVE 424 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEecccc--hhhhcchhhccch-----hhccceEEEEEEEE
Confidence 3689999999999999764 4556666554433 56788777666543
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.4e-12 Score=107.34 Aligned_cols=95 Identities=27% Similarity=0.277 Sum_probs=80.4
Q ss_pred EEEEEEEecCCCcC--CCCCC--CCcEEEEEEcCCCCCceeeeecCCCCC--ceeeeEEEEEEeCC--------------
Q 046405 262 LNVKVLRAMKLKKK--DLIGA--SDPYVKLKLTDDKLPSKKTTVKHRNLN--PEWNEEFGLVVKDP-------------- 321 (538)
Q Consensus 262 L~V~v~~A~~L~~~--d~~g~--~dpyv~v~~~~~~~~~~~T~v~~~t~n--P~Wne~f~f~v~~~-------------- 321 (538)
|+|.|.+|+|++.. +..|. +||||+..+.+....+++|.+..+++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 89999999996643 33564 999999999876555679999999999 99999999987651
Q ss_pred ---------CCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCC
Q 046405 322 ---------EYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 322 ---------~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
....|.++|||+|.+++|++||++.++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 14679999999999999999999999999987663
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-12 Score=136.48 Aligned_cols=93 Identities=29% Similarity=0.422 Sum_probs=83.2
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
....+|.+++|-+|...|.+|.+|||+++.++++.. ..++..+.+|+||+|++.|++....+....+.++|||+|..+.
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence 456779999999999999999999999999987653 3477889999999999999999888878899999999999999
Q ss_pred CCccEEEEEeCccC
Q 046405 339 HDKMGMNVIPLKDI 352 (538)
Q Consensus 339 d~~lG~~~i~l~~l 352 (538)
|+.+|+..++|+.-
T Consensus 691 d~~iget~iDLEnR 704 (1105)
T KOG1326|consen 691 DEKIGETTIDLENR 704 (1105)
T ss_pred cchhhceehhhhhc
Confidence 99999999998754
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=101.47 Aligned_cols=97 Identities=44% Similarity=0.685 Sum_probs=83.0
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHD 340 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~ 340 (538)
.|.|+|++|++|...+..+..+|||++++.+.....++|+++.++.||.|||+|.|.+.....+.|.++|||++..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 37899999999998776567899999999865223468999999999999999999998765789999999998877899
Q ss_pred ccEEEEEeCccCCCCCC
Q 046405 341 KMGMNVIPLKDITPEEP 357 (538)
Q Consensus 341 ~lG~~~i~l~~l~~~~~ 357 (538)
++|.+.+++.++..+..
T Consensus 81 ~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 81 FIGQVTIPLSDLLLGGR 97 (101)
T ss_pred eeEEEEEEHHHcccCcc
Confidence 99999999999877643
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=103.48 Aligned_cols=92 Identities=20% Similarity=0.363 Sum_probs=72.4
Q ss_pred EEeeeccCCCC---CCCCCeEEEEEcCe------eEEeecccCCCCCcCcceEEEEecCC---CCCCeEEEEEEEccCCC
Q 046405 423 ILHEAQDVEGK---YHTNPSARILFRGE------EKKTKRIKKNRDPRWEEEFQFTLEEP---PTDDKLHVEVISTSSRM 490 (538)
Q Consensus 423 ~v~~a~~L~~~---~~~dpyv~v~~~~~------~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~~l~v~V~d~~~~~ 490 (538)
..++|++|+.. +.+||||++++.+. .++|++++++.||+|| .|.|.+... .....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~-- 81 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS-- 81 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC--
Confidence 34689999763 57999999998654 3699999999999999 688876432 125689999999985
Q ss_pred CCCCCCCccEEEEEecchhcccceeceEEEc
Q 046405 491 GLLHPKETLGYIGINLADVVNNKRINEKYHL 521 (538)
Q Consensus 491 g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 521 (538)
+++|++||+++++++++..+. ..+|.+
T Consensus 82 --~~~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 82 --SGKHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred --CCCCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 578999999999999998543 345544
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-11 Score=98.12 Aligned_cols=100 Identities=40% Similarity=0.618 Sum_probs=83.9
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCc
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDK 341 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~ 341 (538)
|.|+|++|++|......+..+|||.+.+.+. ..++|+++.++.||.|||.|.|.+.......+.++||+.+..+.+.+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~--~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK--QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC--ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 5789999999988666778999999999862 23589999999999999999999977456789999999998878999
Q ss_pred cEEEEEeCccCC-CCCCceEEEe
Q 046405 342 MGMNVIPLKDIT-PEEPREMTLD 363 (538)
Q Consensus 342 lG~~~i~l~~l~-~~~~~~~~~~ 363 (538)
+|++.+++.++. .......|++
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~ 101 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLP 101 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceec
Confidence 999999999998 4444455543
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-11 Score=97.53 Aligned_cols=79 Identities=33% Similarity=0.581 Sum_probs=68.9
Q ss_pred EEEEEeeeccCCC---CCCCCCeEEEEEcC---eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 420 LVVILHEAQDVEG---KYHTNPSARILFRG---EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 420 L~v~v~~a~~L~~---~~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
|+|+|++|+||+. .+.+||||++++++ ..++|++++++.+|.|+|.|.|.+... ..+.|.|+|||++. +
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~~l~~~V~~~~~----~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDP-DLDSLSFEVWDKDS----F 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHG-CGTEEEEEEEEETS----S
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecc-cccceEEEEEECCC----C
Confidence 6899999999987 35899999999988 668999999999999999999998764 45569999999986 4
Q ss_pred CCCCccEEEE
Q 046405 494 HPKETLGYIG 503 (538)
Q Consensus 494 ~~d~~lG~~~ 503 (538)
++|++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 5699999874
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-11 Score=125.33 Aligned_cols=120 Identities=18% Similarity=0.372 Sum_probs=98.2
Q ss_pred CCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEcc
Q 046405 411 EGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTS 487 (538)
Q Consensus 411 ~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~ 487 (538)
++.+.-++.++++|..|++|.+ .|++||||.+.++..+++|+++....||+|||.|.|.+++. .+.|.+.|||++
T Consensus 288 egsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns--tdrikvrvwded 365 (1283)
T KOG1011|consen 288 EGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS--TDRIKVRVWDED 365 (1283)
T ss_pred ccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC--CceeEEEEecCc
Confidence 3445567899999999999976 47899999999999999999999999999999999999984 578999999987
Q ss_pred CCCC-C------CCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEE
Q 046405 488 SRMG-L------LHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQ 534 (538)
Q Consensus 488 ~~~g-~------~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~ 534 (538)
.... . -.+|++||+..|.+..+ .+.++-||.|.... +|-|++.+.
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhis 422 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHIS 422 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEEE
Confidence 4300 0 14689999999998876 44678999998542 587776654
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-10 Score=117.33 Aligned_cols=98 Identities=26% Similarity=0.424 Sum_probs=82.3
Q ss_pred eeEEEEEEEEecCCCc-----CCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEE
Q 046405 259 VGILNVKVLRAMKLKK-----KDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVY 331 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~-----~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~ 331 (538)
...|.|+|+.|++++. .+.....||||+|.+.|-. ...++|++..++.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 4689999999998751 1223467999999996532 23457888889999999999999999998888999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCC
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
|+|..+.|+++|++.+|+..|..+-
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc
Confidence 9998889999999999999999884
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=124.01 Aligned_cols=115 Identities=17% Similarity=0.345 Sum_probs=97.6
Q ss_pred ceEEEEEEeeeccCCC---------------------CCCCCCeEEEEEcCeeE-EeecccCC-CCCcCcceEEEEecCC
Q 046405 417 GGLLVVILHEAQDVEG---------------------KYHTNPSARILFRGEEK-KTKRIKKN-RDPRWEEEFQFTLEEP 473 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~---------------------~~~~dpyv~v~~~~~~~-kT~v~~~t-~nP~wne~f~f~v~~~ 473 (538)
-|.|.++|.+|++|+. ++.+||||.|.+++.+. ||+++.+. .||+|+|+|..+|...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 4778888888888763 13579999999998775 99999885 6999999999999874
Q ss_pred CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC------CeEEEEEEEEEeC
Q 046405 474 PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK------NGRIQIELQWRAS 538 (538)
Q Consensus 474 ~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~------~G~i~l~~~wkp~ 538 (538)
...+.|.|.|.+- -+.++||.+.||..+++.++.++.||++.+.. ..+|+++++|+|+
T Consensus 87 --~~~v~f~vkd~~~-----~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 --ASNIIFTVKDDNP-----IGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred --cceEEEEEecCCc-----cCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 4789999999873 34679999999999999998999999998752 3599999999985
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.17 E-value=4e-10 Score=121.45 Aligned_cols=128 Identities=21% Similarity=0.331 Sum_probs=104.0
Q ss_pred eeEEEEEEEEecCCCcCC------------------CCCCCCcEEEEEEcCCCCCceeeeecCCC-CCceeeeEEEEEEe
Q 046405 259 VGILNVKVLRAMKLKKKD------------------LIGASDPYVKLKLTDDKLPSKKTTVKHRN-LNPEWNEEFGLVVK 319 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t-~nP~Wne~f~f~v~ 319 (538)
.|.|.|+|.+|++|++.+ ..+.+||||.|.+++.+. .||+++.+. .||.|+|+|.+.+.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEeec
Confidence 599999999999998631 125789999999987665 599999875 69999999999998
Q ss_pred CCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCC
Q 046405 320 DPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGD 394 (538)
Q Consensus 320 ~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (538)
.. ...+.|.|.|.|.++ ..+||.+.+|.+++..++..+.|+++...- .+..+....|+++++|.|...+
T Consensus 85 h~-~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 85 HM-ASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred cC-cceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEEEEEcccC
Confidence 76 478999999999876 459999999999999998888999885421 1112333589999999998655
|
|
| >PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=92.68 Aligned_cols=85 Identities=20% Similarity=0.447 Sum_probs=73.4
Q ss_pred HHHHHHHCh-hHH-HHHHHHHHHHHHHHHHh-cCCCceeeeEEEeEEeCCCCCCeEeeeEEEec-CCCeEEEEeeeEEeC
Q 046405 75 NKFIETMWP-FLD-KAICKTVRETVKPIIAE-QIPQYKIDSVEFEALTLGSLPPTFQGMKVYVT-DDKELIMEPLLKWAG 150 (538)
Q Consensus 75 N~~l~~~Wp-~~~-~~~~~~i~~~~~~~l~~-~~p~~~i~~i~~~~~~lG~~~p~i~~v~~~~~-~~~~~~ld~~~~~~~ 150 (538)
|.+++|++- +.+ +++.+.+++.++..|++ .+|+| +++|++++++||+.||.|+++|+.+. .++++.+|+|+.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 677888654 333 68899999999999998 68999 99999999999999999999999864 455699999999999
Q ss_pred CCceEEEEEE
Q 046405 151 NPNILIAAKA 160 (538)
Q Consensus 151 ~~~i~l~~~~ 160 (538)
+..+.++.++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9999888764
|
These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria []. |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-11 Score=127.18 Aligned_cols=135 Identities=28% Similarity=0.486 Sum_probs=108.9
Q ss_pred ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCC----------------------------CceeeeecCCC
Q 046405 254 AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL----------------------------PSKKTTVKHRN 305 (538)
Q Consensus 254 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~----------------------------~~~~T~v~~~t 305 (538)
..+.|.-.|.|.+.+|+||.++|.+|.||||+++.+.+... -.+-|++++.|
T Consensus 108 ~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T 187 (1103)
T KOG1328|consen 108 QNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT 187 (1103)
T ss_pred CCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc
Confidence 44556667788889999999999999999999998743110 02468899999
Q ss_pred CCceeeeEEEEEEeCCCCCeEEEEEEecCC---------------------------------CCC---CCccEEEEEeC
Q 046405 306 LNPEWNEEFGLVVKDPEYQALELQVYDWEK---------------------------------VGH---HDKMGMNVIPL 349 (538)
Q Consensus 306 ~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~---------------------------------~~~---d~~lG~~~i~l 349 (538)
+||.|+|.|.|.+.+-.++.+++.+||+|+ .+. |||+|++.+|+
T Consensus 188 LnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl 267 (1103)
T KOG1328|consen 188 LNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPL 267 (1103)
T ss_pred CCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccch
Confidence 999999999999999889999999999982 123 89999999999
Q ss_pred ccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCC
Q 046405 350 KDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGD 394 (538)
Q Consensus 350 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (538)
+++... +.+.|+.|..+.+ .++..|.+++.++.....+.
T Consensus 268 ~EiP~~-Gld~WFkLepRS~-----~S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 268 AEIPPD-GLDQWFKLEPRSD-----KSKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred hcCCcc-hHHHHhccCcccc-----cccccceEEEEEEEeeeccc
Confidence 999876 5677887765433 37889999999988766544
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-10 Score=98.04 Aligned_cols=90 Identities=21% Similarity=0.330 Sum_probs=75.7
Q ss_pred EEEEEeeeccCCC-----CC--CCCCeEEEEEcC---eeEEeecccCCCC--CcCcceEEEEecCCCC------------
Q 046405 420 LVVILHEAQDVEG-----KY--HTNPSARILFRG---EEKKTKRIKKNRD--PRWEEEFQFTLEEPPT------------ 475 (538)
Q Consensus 420 L~v~v~~a~~L~~-----~~--~~dpyv~v~~~~---~~~kT~v~~~t~n--P~wne~f~f~v~~~~~------------ 475 (538)
|+|.|.+|+|++. .| .+||||++.+.+ ++++|.+.+++.| |+||+.|.|++...+.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7899999999653 23 499999999976 3469999999999 9999999999876332
Q ss_pred ----------CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccc
Q 046405 476 ----------DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNK 513 (538)
Q Consensus 476 ----------~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~ 513 (538)
...|.++|||.+. +++|++||.++++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~----~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK----FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc----cCCCCcceEEEEEhhhccccc
Confidence 2479999999986 789999999999999988654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.7e-10 Score=91.35 Aligned_cols=97 Identities=28% Similarity=0.484 Sum_probs=82.2
Q ss_pred EEEEEeeeccCCC---CCCCCCeEEEEEcC-eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC
Q 046405 420 LVVILHEAQDVEG---KYHTNPSARILFRG-EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP 495 (538)
Q Consensus 420 L~v~v~~a~~L~~---~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~ 495 (538)
|.|.|++|++|.. .+..+|||.+++.+ ...+|++..++.||.||+.|.|.+... ....+.++|++.+. ...
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~----~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDR----FSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCC----CCC
Confidence 4688999999975 35799999999998 778999999999999999999999863 45789999999975 346
Q ss_pred CCccEEEEEecchhc-ccceeceEEEc
Q 046405 496 KETLGYIGINLADVV-NNKRINEKYHL 521 (538)
Q Consensus 496 d~~lG~~~i~L~~l~-~~~~~~~~~~L 521 (538)
+.++|++.+++.++. .......|++|
T Consensus 76 ~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 76 DDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CceeEEEEEeHHHhhhcCCcCcceecC
Confidence 789999999999998 55556778765
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=114.41 Aligned_cols=104 Identities=26% Similarity=0.408 Sum_probs=84.7
Q ss_pred eeEEEEEEEEecCCCcC------CCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEE
Q 046405 259 VGILNVKVLRAMKLKKK------DLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQV 330 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~------d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v 330 (538)
...|.|+|+.|.+++.. +.....||||+|.+-+- ...+++|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 11234599999999542 22346899999999999999999999988778899999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
||+|..+.|+++|++.+|+..|..+- .+++|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~ 580 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLH 580 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCc
Confidence 99998889999999999999999885 255653
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=89.36 Aligned_cols=89 Identities=27% Similarity=0.518 Sum_probs=76.6
Q ss_pred EEEEEeeeccCCCC---CCCCCeEEEEEcCe---eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 420 LVVILHEAQDVEGK---YHTNPSARILFRGE---EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 420 L~v~v~~a~~L~~~---~~~dpyv~v~~~~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
+.+.|++|++|... +..+|||++++.+. ..+|+++.++.||.|||.|.|.+... ....|.++|||++. .
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~-~~~~l~i~v~~~~~----~ 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPP-ELAELEIEVYDKDR----F 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCc-ccCEEEEEEEecCC----c
Confidence 67899999999874 36899999999875 68999999999999999999999874 36889999999975 3
Q ss_pred CCCCccEEEEEecchhcccc
Q 046405 494 HPKETLGYIGINLADVVNNK 513 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~~ 513 (538)
+++..+|.+.+++.++..+.
T Consensus 77 ~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred cCCceeEEEEEEHHHcccCc
Confidence 46899999999999987654
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-09 Score=111.87 Aligned_cols=98 Identities=23% Similarity=0.314 Sum_probs=81.8
Q ss_pred eeEEEEEEEEecCCCc--C----CCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEE
Q 046405 259 VGILNVKVLRAMKLKK--K----DLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQV 330 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~--~----d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v 330 (538)
..+|.|+|+.+.+++. . +.....||||+|.+-+-. ..+++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 4689999999998742 1 222356999999995421 2346889999999999999999999988888999999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCC
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
+|+|..+.|+++|+..+|+..|..+-
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy 573 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGI 573 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCcc
Confidence 99998889999999999999999884
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=113.94 Aligned_cols=113 Identities=21% Similarity=0.266 Sum_probs=99.4
Q ss_pred eEEEEEEeeeccCCCC---CCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 418 GLLVVILHEAQDVEGK---YHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
.-|.|.|.+|+||++. |..||||.|.++.+. .+|.++.+++.|-|.|.|.|.++. .-+.+.+-|||+| +
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~--~F~~l~fYv~D~d-----~ 77 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR--TFRYLSFYVWDRD-----L 77 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCc--ceeeEEEEEeccc-----c
Confidence 4578999999999974 689999999998876 599999999999999999999975 3468999999998 6
Q ss_pred CCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEEEe
Q 046405 494 HPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQWRA 537 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~wkp 537 (538)
++|+.||.+.|.=.+|......+.||.|.... +|+|++++++.+
T Consensus 78 ~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 78 KRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred ccccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecc
Confidence 79999999999999998777889999998542 799999998865
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=107.71 Aligned_cols=98 Identities=21% Similarity=0.328 Sum_probs=81.0
Q ss_pred eeEEEEEEEEecCCC----cC--CCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEE
Q 046405 259 VGILNVKVLRAMKLK----KK--DLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQV 330 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~----~~--d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v 330 (538)
...|.|+|+.+.+++ .. +.....||||+|.+.+- ...+++|+++.++.||.|||+|.|.+..++-..|+|+|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998753 11 12245699999999542 22346899999989999999999999988888999999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCC
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
+|+|..+.|+++|++.+|+..|..|-
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy 556 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGI 556 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCcc
Confidence 99998888999999999999999884
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-08 Score=106.57 Aligned_cols=124 Identities=21% Similarity=0.314 Sum_probs=93.3
Q ss_pred eEEEEEEEEecCCCc---C---CCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCcee-eeEEEEEEeCCCCCeEEEEE
Q 046405 260 GILNVKVLRAMKLKK---K---DLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEW-NEEFGLVVKDPEYQALELQV 330 (538)
Q Consensus 260 G~L~V~v~~A~~L~~---~---d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~L~v~v 330 (538)
..|+|+|++|++|+. . +.....||||+|.+.+- ...+++|++++++.||.| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 1 11234799999999542 223468999988899999 99999999988888999999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
+|+|..+.|+++|++.+|+..|..+-. ..+|.... ...-...+|.+.+.+.+.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~-----G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRA-----GKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCC-----CCCCCCeEEEEEEEEcCc
Confidence 999988899999999999999988732 33442211 112234678888877654
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7e-09 Score=109.75 Aligned_cols=121 Identities=23% Similarity=0.400 Sum_probs=91.3
Q ss_pred EEEEEEEEecCCCcCC-C---CCCCCcEEEEEEcCCC--CCceeee-ecCCCCCceeeeEEEEEEeCCCCCeEEEEEEec
Q 046405 261 ILNVKVLRAMKLKKKD-L---IGASDPYVKLKLTDDK--LPSKKTT-VKHRNLNPEWNEEFGLVVKDPEYQALELQVYDW 333 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d-~---~g~~dpyv~v~~~~~~--~~~~~T~-v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 333 (538)
+|.|+|+++.++...- . ...+||||.|.+-|-. ....+|+ +..++-||.|+|+|+|.+..|+-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999776432 1 2457999999985422 2245888 666888999999999999999889999999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
|..++|||+|+.++|+..|..|-.+ .+|.... ...-...+|.+.+.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~-----G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSRE-----GEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee---eeecCCC-----CccccceeEEEEEEEe
Confidence 9999999999999999999988433 2332210 1123445666766654
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-08 Score=103.91 Aligned_cols=112 Identities=19% Similarity=0.252 Sum_probs=87.9
Q ss_pred CceEEEEEEeeeccCCC--------CCCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEE
Q 046405 416 GGGLLVVILHEAQDVEG--------KYHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVE 482 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~--------~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~ 482 (538)
....|.|+|+.|++++. ...+||||+|.+.| ..++|++..++.||+|||.|+|.+..+ .-..|.|+
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~P-ELAlLrf~ 485 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYP-DLALISFE 485 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEcc-CceEEEEE
Confidence 35689999999998741 12579999999965 245788778899999999999999874 56789999
Q ss_pred EEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEE
Q 046405 483 VISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 535 (538)
|+|++. .+.|+++|+..+|++.+..+- +..+|.+.. .-++-++++|
T Consensus 486 V~D~D~----~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 486 VYDYEV----STADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEecCC----CCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 999985 367899999999999987653 667876542 3566676665
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.2e-09 Score=84.05 Aligned_cols=86 Identities=26% Similarity=0.412 Sum_probs=70.9
Q ss_pred EEEEEEEecCCCcCC---CCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 262 LNVKVLRAMKLKKKD---LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 262 L~V~v~~A~~L~~~d---~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
|.|+|..|+|+...+ ..+.+||||.+.+++.. +.||+. +.||.|||+|.|.+. ....+.+.|||.. ...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~-~~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKG-GDQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCC-CCe
Confidence 679999999998877 56888999999998654 347765 579999999999994 3678999999985 345
Q ss_pred CCccEEEEEeCccCCCC
Q 046405 339 HDKMGMNVIPLKDITPE 355 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~ 355 (538)
.-.+|...+.++++.+.
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 66899999999888754
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-07 Score=100.95 Aligned_cols=100 Identities=23% Similarity=0.253 Sum_probs=81.9
Q ss_pred ceEEEEEEeeeccCCC--C-------CCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEE
Q 046405 417 GGLLVVILHEAQDVEG--K-------YHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVE 482 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~ 482 (538)
...|.|.|+.|++++. . ..+||||+|.+-| .+++|+++.++.||+|||.|+|.+..+ .-..+.|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~P-ELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVP-ELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcC-CccEEEEE
Confidence 4689999999988742 1 2359999999865 356999999999999999999999874 55679999
Q ss_pred EEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 483 VISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
|+|++. .+.++++|+..+|++.+..+- +|.+|.+.
T Consensus 548 V~D~D~----~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~ 582 (599)
T PLN02952 548 VREYDM----SEKDDFGGQTCLPVSELRPGI---RSVPLHDK 582 (599)
T ss_pred EEecCC----CCCCCeEEEEEcchhHhcCCc---eeEeCcCC
Confidence 999875 457899999999999987754 58899754
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-09 Score=110.16 Aligned_cols=97 Identities=32% Similarity=0.445 Sum_probs=84.1
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC----CCceeeeecCCCCCceeeeEEEEEEeCC----CCCeEEEE
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK----LPSKKTTVKHRNLNPEWNEEFGLVVKDP----EYQALELQ 329 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~~L~v~ 329 (538)
+...|.|.|+.|+++.+-|.+|.|||||++.+++.. ....+|+|+..|+||+|+|+|+|.|... +...+.|+
T Consensus 945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEE
Confidence 445677778899999999999999999999998754 3456999999999999999999999643 25679999
Q ss_pred EEecCCCCCCCccEEEEEeCccCCC
Q 046405 330 VYDWEKVGHHDKMGMNVIPLKDITP 354 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l~~l~~ 354 (538)
|+|+|-.+.+||-|++.+.|.++..
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eeccceecccccchHHHHhhCCCCC
Confidence 9999999999999999999988864
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.6e-09 Score=110.68 Aligned_cols=230 Identities=17% Similarity=0.191 Sum_probs=152.0
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC---------CCCeEEEE
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP---------EYQALELQ 329 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---------~~~~L~v~ 329 (538)
.-.+++.|.+|++|...+..+.+|||+.+.+.++.. .|.++.+|+||.|+++..|.-.+. .-..+.++
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~---~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e 281 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSK---ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE 281 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccc---eeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence 446778888999999999999999999999987654 899999999999999988752211 13568899
Q ss_pred EEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCC-CCCCCCCCCCCccC
Q 046405 330 VYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGD-EIPPDMDGPNSVQK 408 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~-~~~~~~~~~~~~~~ 408 (538)
+||.++.+.++++|++.....-... .+.-.|.+.++. +...|++.++......... .-+...+ +.-..-
T Consensus 282 ~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg--------~~l~gd~l~a~eliq~~~~i~~p~~~~-~~~~~~ 351 (1105)
T KOG1326|consen 282 VYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRG--------AFLDGDVLIAAELIQIGKPIPQPPPQR-EIIFSL 351 (1105)
T ss_pred eehhhhhchHHhhcccccceEEEec-CCccceEEeecc--------cccccchhHHHHHHhhcCCCCCCCccc-ccceec
Confidence 9999999999999998765544333 345566666442 3445555544322111100 0000000 000001
Q ss_pred CCC--CCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeeccc-CCCCCcCcceEEEEecCCCC----CCe
Q 046405 409 APE--GTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIK-KNRDPRWEEEFQFTLEEPPT----DDK 478 (538)
Q Consensus 409 ~~~--~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~----~~~ 478 (538)
.|. .+....+.+.|--..-+|.... ....|-+-+.++++..++-.+. .-.||.|+..|.+.....|. ...
T Consensus 352 vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~pp 431 (1105)
T KOG1326|consen 352 VPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPP 431 (1105)
T ss_pred cccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCcc
Confidence 111 1223445555555555666542 3578999999999988776665 47899999877666654443 348
Q ss_pred EEEEEEEccCCCCCCCCCCccEEEEEe
Q 046405 479 LHVEVISTSSRMGLLHPKETLGYIGIN 505 (538)
Q Consensus 479 l~v~V~d~~~~~g~~~~d~~lG~~~i~ 505 (538)
+.++|+|.+. ++.-+++|++.+.
T Consensus 432 l~akvvd~~~----fg~~~v~g~c~i~ 454 (1105)
T KOG1326|consen 432 LNAKVVDLRQ----FGRMEVVGQCKIL 454 (1105)
T ss_pred ceeEEEeccc----ccceeehhhhcch
Confidence 9999999874 6788899998876
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-07 Score=96.00 Aligned_cols=178 Identities=19% Similarity=0.299 Sum_probs=126.2
Q ss_pred eeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCC----CCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCC
Q 046405 297 KKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEK----VGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPND 372 (538)
Q Consensus 297 ~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~ 372 (538)
.+|.++.+.+||.|.+.|.+.......|.++++++|-+. ...++|+|++...+..+.........+.+..
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~------ 116 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP------ 116 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc------
Confidence 489999999999999999998887778999999999764 3567899999999999876543322222211
Q ss_pred CCCCccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEc--Ce
Q 046405 373 TRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFR--GE 447 (538)
Q Consensus 373 ~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~--~~ 447 (538)
......|+|.+.+.=.-. .....-...+|++|..+ +++|||..++-. ..
T Consensus 117 -~~~~~~g~iti~aee~~~-------------------------~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~ 170 (529)
T KOG1327|consen 117 -GKNAGSGTITISAEEDES-------------------------DNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDG 170 (529)
T ss_pred -CccCCcccEEEEeecccc-------------------------cCceeeeeeeeeecCcccccccCCcceEEEEecCCC
Confidence 124456777777622110 11122223568888764 589999999863 22
Q ss_pred ----eEEeecccCCCCCcCcceEEEEecCC---CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcc
Q 046405 448 ----EKKTKRIKKNRDPRWEEEFQFTLEEP---PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVN 511 (538)
Q Consensus 448 ----~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~ 511 (538)
.++|.+++++.||.|.+ |....... ..+..+.++++|.+.. ++++++|++..++.++..
T Consensus 171 s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~----~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 171 STQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSN----GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred ceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCC----CCcCceeEecccHHHhcc
Confidence 24999999999999987 33332221 1346899999999864 567999999999998864
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-08 Score=99.91 Aligned_cols=119 Identities=27% Similarity=0.432 Sum_probs=96.2
Q ss_pred eEEEEEEEEecCCCcCCCC-CCCCcEEEEEEcCCCCCceeeeecCCCCCceee-eEEEEEEeCC--CCCeEEEEEEecCC
Q 046405 260 GILNVKVLRAMKLKKKDLI-GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWN-EEFGLVVKDP--EYQALELQVYDWEK 335 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wn-e~f~f~v~~~--~~~~L~v~v~d~~~ 335 (538)
|.|-|+|..|++|+-+|.. ...|.||.+.+++... +|.+..+++||.|| +.|.|.+.+. +...|.+++.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~---ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTF---KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccce---ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7889999999999998864 4679999999987665 89999999999999 6799998754 36789999999999
Q ss_pred CCCCCccEEEEEeCccCCCCC----------CceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 336 VGHHDKMGMNVIPLKDITPEE----------PREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~----------~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
.+.+|-||++.+++..|.-++ -..-|++++..+ ...+|+|.+-+..
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-------hgirgeinvivkv 135 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-------HGIRGEINVIVKV 135 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-------ccccceeEEEEEE
Confidence 999999999999999886432 123677775433 3457888776543
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.6e-08 Score=101.37 Aligned_cols=126 Identities=25% Similarity=0.408 Sum_probs=95.4
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCC---CceeeeecCCCCCceee-eEEEEEEeCCCCCeEEEEEEecCC
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL---PSKKTTVKHRNLNPEWN-EEFGLVVKDPEYQALELQVYDWEK 335 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~v~~~t~nP~Wn-e~f~f~v~~~~~~~L~v~v~d~~~ 335 (538)
-.|.|.|+.|+.|+... .|-..|||+|.+-+... ..++|.+..+++||+|| |.|+|.+.+|+-..|++.|||.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 57889999999999543 35567999999965331 22466677899999999 999999999998999999999999
Q ss_pred CCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCC
Q 046405 336 VGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGD 394 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 394 (538)
++...|||++.+|+..+..+- + ..+|.... ...-....|.+.+...|....
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf-R--sVpLkN~y-----SEdlELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF-R--SVPLKNGY-----SEDLELASLLVFIEMRPVLES 1194 (1267)
T ss_pred cCCcceeeeeecchhhhhccc-e--eeecccCc-----hhhhhhhhheeeeEeccccCc
Confidence 998899999999999998762 1 22221110 012334667788888877544
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.4e-08 Score=77.27 Aligned_cols=82 Identities=22% Similarity=0.443 Sum_probs=68.0
Q ss_pred EEEEEeeeccCCC------CCCCCCeEEEEEcCe-eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 420 LVVILHEAQDVEG------KYHTNPSARILFRGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 420 L~v~v~~a~~L~~------~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
|.|+|+.|+|+.. .+.++|||.+.+++. +.||++ +.||.|||.|+|.+.. ...+.+.|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk---~nEiel~VyDk~~---- 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK---NNEEEVIVYDKGG---- 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC---CcEEEEEEEeCCC----
Confidence 5789999999965 357899999999987 568887 4899999999999953 4679999999863
Q ss_pred CCCCCccEEEEEecchhccc
Q 046405 493 LHPKETLGYIGINLADVVNN 512 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~~ 512 (538)
...--+|-.=+.+++|.+.
T Consensus 71 -~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred -CeecceeeehhhHHHHHHH
Confidence 2445799999999999863
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.5e-08 Score=106.79 Aligned_cols=118 Identities=24% Similarity=0.321 Sum_probs=95.2
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----e
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----E 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~ 447 (538)
++..|+|+++++|. .|.|.|.|.-|++|+- ...+||||+.++.. .
T Consensus 1509 ~~iggqV~LsIsY~---------------------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~s 1561 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN---------------------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTS 1561 (1639)
T ss_pred cccCceEEEEEEEc---------------------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhh
Confidence 55677999999995 6899999999999853 34799999999954 2
Q ss_pred eEEeecccCCCCCcCcceEEEEec-CCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLE-EPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~-~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
++||+++++|.||.|||...+.-. ... ....|.+.||..+. +..+.++|.+.|+|.++...+....||.|...
T Consensus 1562 KRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~----~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1562 KRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGG----LLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred hhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccc----eeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 469999999999999998877621 111 23579999999874 56789999999999998877666799999653
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.4e-07 Score=96.25 Aligned_cols=111 Identities=20% Similarity=0.250 Sum_probs=86.2
Q ss_pred ceEEEEEEeeeccCC----C-----CCCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEE
Q 046405 417 GGLLVVILHEAQDVE----G-----KYHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVE 482 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~----~-----~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~ 482 (538)
...|.|+|+.|++++ . ....||||+|.+-| .+++|+++.++.||+|||.|+|.+..+ .-..+.|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~P-eLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVP-ELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcC-ceeEEEEE
Confidence 467999999998742 1 12579999999954 346999999989999999999998874 55789999
Q ss_pred EEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEE
Q 046405 483 VISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 535 (538)
|+|++. .+.|+++|+..+|++.+..+ -+..+|.+.. ...+-+.++|
T Consensus 530 V~d~D~----~~~ddfigq~~lPv~~Lr~G---yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 530 VHEYDM----SEKDDFGGQTCLPVWELSQG---IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEECCC----CCCCcEEEEEEcchhhhhCc---cceEEccCCCcCCCCCeeEEEEEEe
Confidence 999874 45789999999999998664 2456776542 3566666665
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.7e-07 Score=97.91 Aligned_cols=121 Identities=16% Similarity=0.281 Sum_probs=91.9
Q ss_pred ceeEEEEEEEEecCCCcC----CCC-CCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEe
Q 046405 258 PVGILNVKVLRAMKLKKK----DLI-GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYD 332 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d 332 (538)
-.|.|.++|.+|+-+... +.. ...||||.+.+++.++ .|| .+..||.|+|+|.+.+.......+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 469999999999843321 111 2239999999987665 467 556699999999999987754679999988
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCC-ceEEEeccccCCCCCCCCCccc-cEEEEEEEEEeecCC
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEP-REMTLDLLKNMDPNDTRNEKSR-GQVVVEVLYKPFKGD 394 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~-G~l~l~l~~~p~~~~ 394 (538)
...+||.+.+|..++..++. .+.|+++...- . +... ..|+++++|.|....
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~----~--~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN----G--KPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC----C--CCCCCCEEEEEEEEEEhhhC
Confidence 26799999999999998865 78899985421 1 1122 599999999998665
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.4e-07 Score=96.36 Aligned_cols=111 Identities=21% Similarity=0.225 Sum_probs=86.7
Q ss_pred ceEEEEEEeeeccCCC--C-------CCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEE
Q 046405 417 GGLLVVILHEAQDVEG--K-------YHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVE 482 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~--~-------~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~ 482 (538)
...|.|+|+.|++++. . ..+||||+|.+-| .+++|++..++.||+|||.|+|.+..+ .-..|.|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vP-ELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVP-ELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcC-ceeEEEEE
Confidence 4679999999998642 1 2479999999954 235889888999999999999999874 56789999
Q ss_pred EEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEE
Q 046405 483 VISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQW 535 (538)
Q Consensus 483 V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~w 535 (538)
|+|++. ..+|+++|+..+|+..|..+= +..+|.+.. ..++-++++|
T Consensus 547 V~d~d~----~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDI----NEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEECCC----CCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence 999975 367999999999999986643 456776542 3466666665
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-07 Score=99.41 Aligned_cols=110 Identities=20% Similarity=0.283 Sum_probs=86.5
Q ss_pred CceEEEEEEeeeccCCC--------CCCCCCeEEEEEcCeeE-EeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEc
Q 046405 416 GGGLLVVILHEAQDVEG--------KYHTNPSARILFRGEEK-KTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVIST 486 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~--------~~~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
--|.|.++|.+|+-+.. ....+|||.|.+++.+. || .+..||+|+|+|..+|... ....+.|.|.|.
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~~ 83 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKTK 83 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEecC
Confidence 35777777777763211 01239999999988765 88 5567999999999999874 335799999883
Q ss_pred cCCCCCCCCCCccEEEEEecchhcccce-eceEEEcCCCC----C-eEEEEEEEEEeC
Q 046405 487 SSRMGLLHPKETLGYIGINLADVVNNKR-INEKYHLIDSK----N-GRIQIELQWRAS 538 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l~~~~~-~~~~~~L~~~~----~-G~i~l~~~wkp~ 538 (538)
-++||.+.||..+++.++. ++.||++.+.. . .+|+++++|+|+
T Consensus 84 ---------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 84 ---------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred ---------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 3799999999999999765 99999998752 2 599999999985
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.6e-07 Score=93.97 Aligned_cols=114 Identities=19% Similarity=0.387 Sum_probs=94.5
Q ss_pred ceEEEEEEeeeccCCCC----CCCCCeEEEEEcCeeEEeecccCCCCCcCcc-eEEEEecCCCC-CCeEEEEEEEccCCC
Q 046405 417 GGLLVVILHEAQDVEGK----YHTNPSARILFRGEEKKTKRIKKNRDPRWEE-EFQFTLEEPPT-DDKLHVEVISTSSRM 490 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne-~f~f~v~~~~~-~~~l~v~V~d~~~~~ 490 (538)
.|.+.|.|..|++||.. ...|.||++.+++..+||.+..++.||.||. -|.|.+.+... .++|.|.++|+++
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-- 79 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-- 79 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc--
Confidence 47889999999999863 4679999999999999999999999999994 69999987643 4589999999997
Q ss_pred CCCCCCCccEEEEEecchhccc----------ceeceEEEcCCC---CCeEEEEEEE
Q 046405 491 GLLHPKETLGYIGINLADVVNN----------KRINEKYHLIDS---KNGRIQIELQ 534 (538)
Q Consensus 491 g~~~~d~~lG~~~i~L~~l~~~----------~~~~~~~~L~~~---~~G~i~l~~~ 534 (538)
-+.++.||.+.|+++.+.-. .-+..|||+.+. -+|+|.+-++
T Consensus 80 --ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 80 --YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred --cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 46889999999999887631 236899999876 2688876543
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-06 Score=90.61 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=87.6
Q ss_pred ceEEEEEEeeeccCCC----C-----CCCCCeEEEEEcC-----eeEEeecccCCCCCcC-cceEEEEecCCCCCCeEEE
Q 046405 417 GGLLVVILHEAQDVEG----K-----YHTNPSARILFRG-----EEKKTKRIKKNRDPRW-EEEFQFTLEEPPTDDKLHV 481 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~----~-----~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~~l~v 481 (538)
...|.|+|++|++|+. . ...||||+|.+-| .+++|++++++.||+| ||.|+|.+..+ .-..+.|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~p-ELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVP-ELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcC-ceeEEEE
Confidence 4579999999998731 1 2479999999854 2459999988899999 99999999874 5578999
Q ss_pred EEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEEEe
Q 046405 482 EVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQWRA 537 (538)
Q Consensus 482 ~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~wkp 537 (538)
.|+|++. .+.|+++|+..+|++.|..+ -+..+|.+.. ..++-+++.+.|
T Consensus 509 ~V~D~d~----~~~d~figq~~lPv~~Lr~G---YR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 509 KVQDYDN----DTQNDFAGQTCLPLPELKSG---VRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEEeCCC----CCCCCEEEEEEcchhHhhCC---eeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 9999874 46789999999999998554 3566776542 466777776654
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-06 Score=91.09 Aligned_cols=111 Identities=18% Similarity=0.298 Sum_probs=86.7
Q ss_pred EEEEEEeeeccCCCC-------CCCCCeEEEEEcCe-----eEEee-cccCCCCCcCcceEEEEecCCCCCCeEEEEEEE
Q 046405 419 LLVVILHEAQDVEGK-------YHTNPSARILFRGE-----EKKTK-RIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVIS 485 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~-------~~~dpyv~v~~~~~-----~~kT~-v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d 485 (538)
.|.|.|..++++... ..+||||.|.+-|- ..+|+ +..++-||.|+|.|+|.+..+ .-+-|.+.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vP-ELAliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVP-ELALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEecc-ceeEEEEEEEe
Confidence 899999999976531 35899999998663 35899 556789999999999999985 56789999999
Q ss_pred ccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC-----CCeEEEEEEEEEe
Q 046405 486 TSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS-----KNGRIQIELQWRA 537 (538)
Q Consensus 486 ~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~wkp 537 (538)
++. .++|+++|+.++|++.+..+= +-.+|.+. ..-++-++++|.+
T Consensus 696 ~d~----~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 696 YDY----IGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred cCC----CCcccccceeeccHHHhhCce---eeeeecCCCCccccceeEEEEEEEec
Confidence 986 467999999999999986642 44555543 2466777777653
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=5e-07 Score=75.26 Aligned_cols=102 Identities=20% Similarity=0.303 Sum_probs=77.1
Q ss_pred EEEEEeeeccCCCC----------------CCCCCeEEEEEc----CeeEEeecccCCCCCcCcceEEEEecCC------
Q 046405 420 LVVILHEAQDVEGK----------------YHTNPSARILFR----GEEKKTKRIKKNRDPRWEEEFQFTLEEP------ 473 (538)
Q Consensus 420 L~v~v~~a~~L~~~----------------~~~dpyv~v~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~------ 473 (538)
|.|.|++|.+|... =..|+||++.+. ++.++|+++-++--|.|+.+++|+|.-.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46788888887631 146899999963 4567999999999999999999999711
Q ss_pred --------CCCCeEEEEEEEccCCC-C-----CCCCCCccEEEEEecchhccc-ceeceEEEc
Q 046405 474 --------PTDDKLHVEVISTSSRM-G-----LLHPKETLGYIGINLADVVNN-KRINEKYHL 521 (538)
Q Consensus 474 --------~~~~~l~v~V~d~~~~~-g-----~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~L 521 (538)
-....+.++||.+.... + .-.+|-.||.+.||+.+++.+ ..+..||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11347899999886431 0 013456899999999999975 478999985
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.1e-07 Score=98.84 Aligned_cols=106 Identities=25% Similarity=0.231 Sum_probs=88.4
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEE---EeCCCCCeEEEEEEec
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV---VKDPEYQALELQVYDW 333 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~---v~~~~~~~L~v~v~d~ 333 (538)
.|+|.|-|..|++|+--..+..+||||+.++.+. +..++||++.++|.||+|||...+. ........|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 6899999999999975554567899999999654 3456799999999999999987765 2223357899999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+....+.++|.+.++|.++...++...|+.+
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 9999999999999999999887776678876
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.9e-06 Score=87.05 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=79.0
Q ss_pred eEEEEEEeeeccCCCC--CCCCCeEEEEEcCe-----e-EEeecccCCCCCcCc-ceEEEEecCCCCCCeEEEEEEEccC
Q 046405 418 GLLVVILHEAQDVEGK--YHTNPSARILFRGE-----E-KKTKRIKKNRDPRWE-EEFQFTLEEPPTDDKLHVEVISTSS 488 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~-----~-~kT~v~~~t~nP~wn-e~f~f~v~~~~~~~~l~v~V~d~~~ 488 (538)
-.|.|.|+.|+.|+.. +...|||+|.+-|. + ++|.++.+..||+|| |.|+|.+.++ .-.-|.+.|+|.|-
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP-e~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP-EFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC-ceEEEEEEEecccc
Confidence 4788999999999974 45679999998542 3 355667789999999 9999999995 66789999999973
Q ss_pred CCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 489 RMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
++...+||+++.|+..+..+ -+..+|.+.
T Consensus 1144 ----fs~~~FiaqA~yPv~~ik~G---fRsVpLkN~ 1172 (1267)
T KOG1264|consen 1144 ----FSDPNFLAQATYPVKAIKSG---FRSVPLKNG 1172 (1267)
T ss_pred ----cCCcceeeeeecchhhhhcc---ceeeecccC
Confidence 77888999999999987553 245566543
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.4e-06 Score=80.41 Aligned_cols=96 Identities=33% Similarity=0.446 Sum_probs=79.4
Q ss_pred ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEE
Q 046405 254 AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQ 329 (538)
Q Consensus 254 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~ 329 (538)
.++....-|.|++++|..|..+|.+|.+||||..++.+. ..-+++|.+.++|.||.||+.|.|.+... ....+.|.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 345567789999999999999999999999999998643 23357899999999999999999988533 36789999
Q ss_pred EEecCCCCCCCccEEEEEeC
Q 046405 330 VYDWEKVGHHDKMGMNVIPL 349 (538)
Q Consensus 330 v~d~~~~~~d~~lG~~~i~l 349 (538)
|||++..+..+++|-+....
T Consensus 307 vgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred ecccCCCcCccCCCcccccc
Confidence 99999887889988866443
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.7e-06 Score=64.48 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=67.5
Q ss_pred EEEEEEecCCCcCCCCC-CCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEecCCCCCC
Q 046405 263 NVKVLRAMKLKKKDLIG-ASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDWEKVGHH 339 (538)
Q Consensus 263 ~V~v~~A~~L~~~d~~g-~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~~~~~~d 339 (538)
.|++++|+||.-....| .+.-|++=-+.-.+.-..||+++++..||+|+|+|.|.+... ..-.|-+.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 58999999997554333 334566544422222236899999999999999999988643 35578888888 46788
Q ss_pred CccEEEEEeCccCCCC
Q 046405 340 DKMGMNVIPLKDITPE 355 (538)
Q Consensus 340 ~~lG~~~i~l~~l~~~ 355 (538)
+.||.|.+.++++.++
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 9999999999998765
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0015 Score=65.42 Aligned_cols=231 Identities=14% Similarity=0.224 Sum_probs=152.0
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeC-------CCCCeEEEEEEecC
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD-------PEYQALELQVYDWE 334 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-------~~~~~L~v~v~d~~ 334 (538)
+.|+|+++++.+... ...-.+..++++... .|..+..+..|.||......+.. .....|++++|..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 678999999998762 345677788887766 67778889999999988888752 23678999999988
Q ss_pred -CCCCCCccEEEEEeCccC---CCC--CCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCCCCCCC-----CC--
Q 046405 335 -KVGHHDKMGMNVIPLKDI---TPE--EPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPD-----MD-- 401 (538)
Q Consensus 335 -~~~~d~~lG~~~i~l~~l---~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~-----~~-- 401 (538)
..+..+.+|.+.++|+.. ..+ .....|++|....+ +-.+.+-+|.+.+...........+. ..
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~----~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS----KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc----ccccCCccEEEEEEEeccccccCCccccccccCCC
Confidence 557888999999999999 544 45668888864321 11334567888777765443211000 00
Q ss_pred -CCCC-------ccC----------------CCCCCCCCceEEEEEEeeeccCCCC---------CCCCCeEEEEEcCee
Q 046405 402 -GPNS-------VQK----------------APEGTPEGGGLLVVILHEAQDVEGK---------YHTNPSARILFRGEE 448 (538)
Q Consensus 402 -~~~~-------~~~----------------~~~~~~~~~g~L~v~v~~a~~L~~~---------~~~dpyv~v~~~~~~ 448 (538)
.... .+. .|.+.....-.|.|++..|+||..- +...-|...++-|..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 0000 000 0111112344788888899987541 123446666777888
Q ss_pred EEeecccCCCCCcCc--ceEEEEecCC--------CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcc
Q 046405 449 KKTKRIKKNRDPRWE--EEFQFTLEEP--------PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVN 511 (538)
Q Consensus 449 ~kT~v~~~t~nP~wn--e~f~f~v~~~--------~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~ 511 (538)
..|...+...+|.|. +...+.+... .....|.|.++.. +..||.+.+++..++.
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g---------~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG---------NQSLGSTSVPLQPLLP 295 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC---------CcEEEEEEEEhhhccC
Confidence 888888888889775 3332555532 1234677777653 4789999999999974
|
|
| >KOG3532 consensus Predicted protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.8e-05 Score=77.13 Aligned_cols=225 Identities=15% Similarity=0.245 Sum_probs=150.9
Q ss_pred CCCCCccCCCC-------CchHHHHHHHHHHCh------hHHHHHHHHHHHHHHHHHHhcCCCceeeeEEEeEEeCCCCC
Q 046405 58 EIPLWVKNPDY-------DRVDWLNKFIETMWP------FLDKAICKTVRETVKPIIAEQIPQYKIDSVEFEALTLGSLP 124 (538)
Q Consensus 58 ~~p~w~~~~d~-------E~~~WlN~~l~~~Wp------~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~ 124 (538)
+.|.|...-.. -.|-.+|.+++.++. ....++.+.+...++.++.....+-.++.+++.++-||.+.
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 68888865221 245556777777765 23455556666666666666433323899999999999999
Q ss_pred CeEeeeEEEecC------------C-------------CeEEEEeeeEEeCCCceEEEEEE-cceeEEEEEEEEEEEEEE
Q 046405 125 PTFQGMKVYVTD------------D-------------KELIMEPLLKWAGNPNILIAAKA-FGLKATVQVVDLQVFAFP 178 (538)
Q Consensus 125 p~i~~v~~~~~~------------~-------------~~~~ld~~~~~~~~~~i~l~~~~-~~~~~~v~v~~~~~~g~~ 178 (538)
|.+++.+++.-+ + ..+.+=+++.|.|+..-++++.. .+.+..+.|+-.+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998611 1 12345578899998877777765 233444555677999999
Q ss_pred EEEeecCCCCCCeeeEEEEEcCCCCeEEEEEeE--ecccccccccHHHHHHHHHHHHHhhhccCCCcee-------eccc
Q 046405 179 RITLKPLVPTFPCFANIYVSLMEKPHVDFGIKL--FGADAMAIPGLYTYVQGLIKDQVANMYLWPKALE-------VQIM 249 (538)
Q Consensus 179 rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~--~g~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~-------~pl~ 249 (538)
|+.+. ..|+ .+++++|+..|.+..+++. .| +-|. -.+...|.+.++..+.....||++-- .|+-
T Consensus 241 r~~~~----r~py-~hw~~sf~G~P~~e~di~s~~qg-~qLQ-~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~ 313 (1051)
T KOG3532|consen 241 RVILS----RQPY-HHWTFSFVGQPIFETDINSQIQG-HQLQ-RLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF 313 (1051)
T ss_pred eEEEE----eccc-eeeeeeeccCchhhhhhHHHHHH-HHHH-HHhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence 99986 4466 8899999999988655543 22 2110 11335566677777778888998421 1222
Q ss_pred cccc-----ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcC
Q 046405 250 DPAK-----AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTD 291 (538)
Q Consensus 250 ~~~~-----~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~ 291 (538)
.... -.-.+.|.+.|++.++..|.. ..++..-||.+.+.+
T Consensus 314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 314 QASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES 358 (1051)
T ss_pred ccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence 1111 123568999999999988864 457788999998854
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.1e-05 Score=79.43 Aligned_cols=88 Identities=26% Similarity=0.524 Sum_probs=71.7
Q ss_pred EEEecCCCcCCCCCCCCcEEEEEEc---CCCCCceeeeecCCCCCceeeeEEEEEEeCCC----CCeEEEEEEecCCCCC
Q 046405 266 VLRAMKLKKKDLIGASDPYVKLKLT---DDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE----YQALELQVYDWEKVGH 338 (538)
Q Consensus 266 v~~A~~L~~~d~~g~~dpyv~v~~~---~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----~~~L~v~v~d~~~~~~ 338 (538)
..+|++|.++|..+++|||..++-. +.....++|++.++++||.|.+ |.+...... ...+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 3568999999999999999988753 2334457999999999999994 555544332 4678999999999999
Q ss_pred CCccEEEEEeCccCCC
Q 046405 339 HDKMGMNVIPLKDITP 354 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~ 354 (538)
++++|.+..++.++..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999999975
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.1e-05 Score=82.56 Aligned_cols=91 Identities=15% Similarity=0.291 Sum_probs=74.8
Q ss_pred cCCceeEEEEEEEEecCCCcCCCCCCCCcEEEE-EEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEec
Q 046405 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKL-KLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDW 333 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v-~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 333 (538)
.+.-.|+..+++++|+ ++. .|||..+ ++|.+. +||.+.++|.||+||+...|.+...+....++.|||.
T Consensus 49 ~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~---f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MKF---KDKWLACVSFGEQT---FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFET 118 (644)
T ss_pred cccccCeEEEEeehhh----hcc---CCcEEEEEEeccee---eeeccccccCCcccchhhceEeccCCcceEEEEEEec
Confidence 3456799999999997 332 4887655 555444 4999999999999999999999876666679999999
Q ss_pred CCCCCCCccEEEEEeCccCCCC
Q 046405 334 EKVGHHDKMGMNVIPLKDITPE 355 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~ 355 (538)
+.++.++++|.|+++|.++...
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCCCHHHhhhheeecHhhccHH
Confidence 9999999999999988777654
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.1e-05 Score=75.71 Aligned_cols=118 Identities=21% Similarity=0.309 Sum_probs=94.3
Q ss_pred CceEEEEEEeeeccCCCC---CCCCCeEEEEEc-----CeeEEeecccCCCCCcCcceEEEEecCCCC----------CC
Q 046405 416 GGGLLVVILHEAQDVEGK---YHTNPSARILFR-----GEEKKTKRIKKNRDPRWEEEFQFTLEEPPT----------DD 477 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~----------~~ 477 (538)
....|++.|.++++++.- ...|.|+++.+. .++.+|.+++.|.+|.|+|.|...+...+. ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 456788888899887652 356789998873 234599999999999999999999986322 22
Q ss_pred eEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC---CeEEEEEEEEE
Q 046405 478 KLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK---NGRIQIELQWR 536 (538)
Q Consensus 478 ~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~---~G~i~l~~~wk 536 (538)
-+.|+++.+. |++++|.++|.+++.|.-|.....+...++|.+.. +|++.+++..|
T Consensus 445 g~kfeifhkg---gf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKG---GFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeecc---ccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 6899999886 46889999999999999888777889999998763 69998888765
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.58 E-value=5.5e-05 Score=58.69 Aligned_cols=93 Identities=12% Similarity=0.163 Sum_probs=67.0
Q ss_pred EEEEeeeccCCC--C--CCCCCeEEEEE--cCe-eEEeecccCCCCCcCcceEEEEecCCCCC-CeEEEEEEEccCCCCC
Q 046405 421 VVILHEAQDVEG--K--YHTNPSARILF--RGE-EKKTKRIKKNRDPRWEEEFQFTLEEPPTD-DKLHVEVISTSSRMGL 492 (538)
Q Consensus 421 ~v~v~~a~~L~~--~--~~~dpyv~v~~--~~~-~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~l~v~V~d~~~~~g~ 492 (538)
-+++.+|+||.- . .++.-|++-.+ ..- ..||...+.+.||+|.|+|.|.+...... -.|.+.|+..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~------ 75 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ------ 75 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc------
Confidence 368899999853 2 23445666544 232 24999999999999999999998754333 3688889884
Q ss_pred CCCCCccEEEEEecchhcccceeceEEE
Q 046405 493 LHPKETLGYIGINLADVVNNKRINEKYH 520 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 520 (538)
+.+++.||.+.++|+++-..+ ..+|-+
T Consensus 76 ~~RKe~iG~~sL~l~s~geeE-~~HW~e 102 (103)
T cd08684 76 TPRKRTIGECSLSLRTLSTQE-TDHWLE 102 (103)
T ss_pred CCccceeeEEEeecccCCHHH-hhhhhc
Confidence 457899999999999875543 356643
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00016 Score=60.60 Aligned_cols=101 Identities=22% Similarity=0.310 Sum_probs=71.9
Q ss_pred EEEEEEEecCCCcCCC---------C----CCCCcEEEEEEc--CCCCCceeeeecCCCCCceeeeEEEEEEe-------
Q 046405 262 LNVKVLRAMKLKKKDL---------I----GASDPYVKLKLT--DDKLPSKKTTVKHRNLNPEWNEEFGLVVK------- 319 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~---------~----g~~dpyv~v~~~--~~~~~~~~T~v~~~t~nP~Wne~f~f~v~------- 319 (538)
|.|.|++|.+|+..-. . -.-++||++.+. ++. ..++|+++-++--|.|+..++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~-e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEK-ELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCC-ceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence 4678899999875321 0 123799999863 333 3468999999999999999999875
Q ss_pred -C-------CCCCeEEEEEEecCCC----------CCCCccEEEEEeCccCCCCC-CceEEEe
Q 046405 320 -D-------PEYQALELQVYDWEKV----------GHHDKMGMNVIPLKDITPEE-PREMTLD 363 (538)
Q Consensus 320 -~-------~~~~~L~v~v~d~~~~----------~~d~~lG~~~i~l~~l~~~~-~~~~~~~ 363 (538)
+ .+...+.++||+++.. .+|-.||.+.+|+.+|.... +-..|++
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~p 142 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYP 142 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCcccccc
Confidence 1 1256899999997642 24568999999999987543 3334443
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00024 Score=76.82 Aligned_cols=100 Identities=21% Similarity=0.354 Sum_probs=78.5
Q ss_pred CceEEEEEEeeeccCCCCCCCCCeEE-EEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCC
Q 046405 416 GGGLLVVILHEAQDVEGKYHTNPSAR-ILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLH 494 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~~~~dpyv~-v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
-+|+..+++++|+ ....|||.. +++|.+..||...++|.||+||+...|.+... ...-..+.|+|.++ ++
T Consensus 52 ~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~s 122 (644)
T PLN02964 52 FSGIALLTLVGAE----MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKN-GPHLARISVFETNR----LS 122 (644)
T ss_pred ccCeEEEEeehhh----hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccC-CcceEEEEEEecCC----CC
Confidence 4799999999998 233588654 56777889999999999999999999999764 33457999999986 78
Q ss_pred CCCccEEEEEecchhcccc--eeceEEEcCCC
Q 046405 495 PKETLGYIGINLADVVNNK--RINEKYHLIDS 524 (538)
Q Consensus 495 ~d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~ 524 (538)
.++.+|.++++|.++...+ .+.+-|.+.+.
T Consensus 123 ~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~ 154 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQEPESACESFDLLDP 154 (644)
T ss_pred HHHhhhheeecHhhccHHHHHHHHHHHHHHCC
Confidence 9999999999998887654 23344555543
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00042 Score=68.22 Aligned_cols=109 Identities=25% Similarity=0.378 Sum_probs=85.1
Q ss_pred CceeEEEEEEEEecCCCcCCCC-CCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEe-
Q 046405 257 KPVGILNVKVLRAMKLKKKDLI-GASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYD- 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d- 332 (538)
..+|.|.|.|++|++|..+... ..++|||+|++.+. ...+.+|+...+|.+|-+.+...|.-. +....|.+.+|-
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence 4589999999999999866433 36799999999543 345568898899999988777666653 446789999984
Q ss_pred cCCCCCCCccEEEEEeCccCCCCC-CceEEEeccc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEE-PREMTLDLLK 366 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~l~~ 366 (538)
+.++.++.|+|.+.+-+.+|.... ....|+++..
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 566777889999999999998765 6667887754
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00063 Score=67.01 Aligned_cols=104 Identities=24% Similarity=0.320 Sum_probs=84.6
Q ss_pred CceEEEEEEeeeccCCCC----CCCCCeEEEEEcCe-----eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEc
Q 046405 416 GGGLLVVILHEAQDVEGK----YHTNPSARILFRGE-----EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVIST 486 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
..|-+.|.|++|++|..+ ..++|||+|++-.. +.+|+..++|.+|.|.+...|.-. |....|.+.||.+
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s--p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS--PPGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC--CCccEEEEEEecc
Confidence 568899999999999652 37899999998543 359999999999999888777654 3456899999966
Q ss_pred cCCCCCCCCCCccEEEEEecchhcccc-eeceEEEcCCC
Q 046405 487 SSRMGLLHPKETLGYIGINLADVVNNK-RINEKYHLIDS 524 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~ 524 (538)
- |.+..+.++|.+++-+.++-... -...||+|-++
T Consensus 345 y---gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 Y---GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred c---cccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 4 34778999999999999987655 57899999875
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0091 Score=59.88 Aligned_cols=102 Identities=16% Similarity=0.354 Sum_probs=84.0
Q ss_pred EEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCC------CCCCeEEEEEEEccCCCCCC
Q 046405 420 LVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEP------PTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 420 L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~------~~~~~l~v~V~d~~~~~g~~ 493 (538)
+.+.|.+|++.+......-.+..+++++...|..+.++..|.||....+.+... ..+.+|+++++.-+.. -
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~---~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS---T 78 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC---C
Confidence 578899999999865667789999999999999999999999999999988743 2345899999887622 3
Q ss_pred CCCCccEEEEEecchh---ccc--ceeceEEEcCCC
Q 046405 494 HPKETLGYIGINLADV---VNN--KRINEKYHLIDS 524 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l---~~~--~~~~~~~~L~~~ 524 (538)
+..+.+|++.++|..+ ..+ .....||+|.+.
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~ 114 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS 114 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence 5678999999999998 443 356899999887
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.026 Score=50.39 Aligned_cols=89 Identities=25% Similarity=0.300 Sum_probs=61.0
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCCC-ceeeeecCCCCCceeeeEEEEEEe--C-CCCCeEEEEEEec
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLP-SKKTTVKHRNLNPEWNEEFGLVVK--D-PEYQALELQVYDW 333 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~ 333 (538)
..++|+|+++.++.-.+ .+|-||.+.+ +++... ...|+.+. ..++.|||...|++. + +....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46889999999987543 4688998876 433321 12343333 367999999999875 2 3367899999997
Q ss_pred CCCC----CCCccEEEEEeCccC
Q 046405 334 EKVG----HHDKMGMNVIPLKDI 352 (538)
Q Consensus 334 ~~~~----~d~~lG~~~i~l~~l 352 (538)
.... ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 224699999888773
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0015 Score=65.04 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=91.8
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEc--CCCCCceeeeecCCCCCceeeeEEEEEEeCCC-----------C
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLT--DDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE-----------Y 323 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~--~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-----------~ 323 (538)
.....|.+.|+++.+++........|-|+++.+. +....+.+|.++++|.+|.|+|.|.+.+.... .
T Consensus 364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 3455777888888887754433345788888772 22333458999999999999999999986511 3
Q ss_pred CeEEEEEEecCC-CCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 324 QALELQVYDWEK-VGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 324 ~~L~v~v~d~~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
..++|++|++.. +.+|.++|.|.+.|..|...-..+..+++... .....|.|.+.+...
T Consensus 444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIR 503 (523)
T ss_pred cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEe
Confidence 468999999865 46788999999999999877666667776431 245668888887664
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.041 Score=48.54 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=87.3
Q ss_pred CCceEEEEEEeeeccCCC-----CCCCCC--eEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCC------------C
Q 046405 415 EGGGLLVVILHEAQDVEG-----KYHTNP--SARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPP------------T 475 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~-----~~~~dp--yv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~------------~ 475 (538)
.....|++.|..++-.-. .+..+. ++-+.+++++++|+.+.-+.+|.|+|.|-|.+.... .
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 356789999999885422 123333 444556889999999999999999999999998642 1
Q ss_pred CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhccccee--ceEEEcCCC------CCeEEEEEEEEEeC
Q 046405 476 DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRI--NEKYHLIDS------KNGRIQIELQWRAS 538 (538)
Q Consensus 476 ~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~L~~~------~~G~i~l~~~wkp~ 538 (538)
.+.+++-|.-.+.. +...++|+-.+....++..+.. .-...|.+. ..|-+.+++...|.
T Consensus 86 ~~pihivli~~d~~----~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPS----GETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCceEEEEEEecCC----CceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 34788888876642 3448999999999999986643 444556543 25888888888774
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.015 Score=51.94 Aligned_cols=90 Identities=24% Similarity=0.329 Sum_probs=63.6
Q ss_pred eEEEEEEeeeccCCCCCCCCCeEEEEE--cCeeE----EeecccCCCCCcCcceEEEEec--CCCCCCeEEEEEEEccCC
Q 046405 418 GLLVVILHEAQDVEGKYHTNPSARILF--RGEEK----KTKRIKKNRDPRWEEEFQFTLE--EPPTDDKLHVEVISTSSR 489 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~~~~dpyv~v~~--~~~~~----kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~~~ 489 (538)
..++|.|++|.++.-....+-||++.+ |++.. .|+.+. ..++.|||-.+|.+. +.|.+..|.|.||+...+
T Consensus 8 ~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~ 86 (158)
T cd08398 8 SNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGR 86 (158)
T ss_pred CCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEEecc
Confidence 468899999999877656778888855 44432 444444 378999998888664 557788999999997642
Q ss_pred CCCCCCCCccEEEEEecch
Q 046405 490 MGLLHPKETLGYIGINLAD 508 (538)
Q Consensus 490 ~g~~~~d~~lG~~~i~L~~ 508 (538)
.+.-.....+|.++++|-+
T Consensus 87 ~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 87 KGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred cCCCCceEEEEEEEEEEEC
Confidence 1100123569999999977
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.27 Score=43.11 Aligned_cols=124 Identities=22% Similarity=0.300 Sum_probs=79.7
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecC-CCCCceeeeEEEEEEeC--------CCCCeEEE
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNLNPEWNEEFGLVVKD--------PEYQALEL 328 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~--------~~~~~L~v 328 (538)
..-.+.|++++..+++.. ...-|++...+.......+|.... .+..-.|||.|.+.+.- .+...+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 455788999999988862 223455554443321122333332 34457899999987641 12456889
Q ss_pred EEEecCCCCCCCccEEEEEeCccCCCC--CCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecC
Q 046405 329 QVYDWEKVGHHDKMGMNVIPLKDITPE--EPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKG 393 (538)
Q Consensus 329 ~v~d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (538)
.|+....-++...+|.+.++|++.... ......+++... ......|++++.+.+..+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--------~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--------KKSNATLSISISLSELRE 139 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--------CCCCcEEEEEEEEEECcc
Confidence 998875333336999999999999875 344555655331 255678999999888744
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.1 Score=46.04 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=89.0
Q ss_pred ceeEEEEEEEEecCCCcCCC--CCCCCcEEEE--EEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCC-----------
Q 046405 258 PVGILNVKVLRAMKLKKKDL--IGASDPYVKL--KLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPE----------- 322 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~--~g~~dpyv~v--~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~----------- 322 (538)
..-.|.++|..++-....-. .+..+.-..+ .++++++ +|+.+..+.+|.++|.|-|.+....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF---~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll 83 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRF---RSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL 83 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceE---ecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence 35578888888775432211 1344444444 4466665 8999999999999999999987432
Q ss_pred --CCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCc--eEEEeccccCCCCCCCCCccccEEEEEEEEEeec
Q 046405 323 --YQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPR--EMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFK 392 (538)
Q Consensus 323 --~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (538)
.+.+++.|.-.|..+...++|.-.++.+.+...... ....+|.... ...+...|-|.++++..|..
T Consensus 84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~----~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG----PESKVPVGILDLRLELLPNL 153 (156)
T ss_pred cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC----CCCccceeEEEEEEEeecCC
Confidence 457888888888777778999999999988766544 4555553321 11245789999999988863
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.046 Score=49.71 Aligned_cols=91 Identities=18% Similarity=0.391 Sum_probs=64.3
Q ss_pred eEEEEEEeeeccCCC-CCCCCCeEEEEE--cCee----EEeecccCCCCCcCcceEEEEec--CCCCCCeEEEEEEEccC
Q 046405 418 GLLVVILHEAQDVEG-KYHTNPSARILF--RGEE----KKTKRIKKNRDPRWEEEFQFTLE--EPPTDDKLHVEVISTSS 488 (538)
Q Consensus 418 g~L~v~v~~a~~L~~-~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~~ 488 (538)
..++|+|+++.++.. ....+-||++.+ |++. ..|+.+.-..++.|||.++|.+. +.|.+..|.|.||+...
T Consensus 8 ~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 8 EKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred CCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence 468899999999986 445666777644 5543 26655555678999999888664 66778899999998753
Q ss_pred CC-C-----------CCCCCCccEEEEEecch
Q 046405 489 RM-G-----------LLHPKETLGYIGINLAD 508 (538)
Q Consensus 489 ~~-g-----------~~~~d~~lG~~~i~L~~ 508 (538)
.. | .-+.+..||.++++|-+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 88 KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccCcceEEEEEeEEEEc
Confidence 10 0 01124689999999976
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.052 Score=49.39 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=60.9
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCCC-ceeeeecCCCCCceeeeEEEEEEe--C-CCCCeEEEEEEec
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLP-SKKTTVKHRNLNPEWNEEFGLVVK--D-PEYQALELQVYDW 333 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~ 333 (538)
..++|+|+.+.++... ....+-||.+.+ |++... ...|+....+.++.|||.+.|++. + |....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 3689999999999862 234677888755 443321 224555444567999999999764 2 3467899999997
Q ss_pred CCCC----------------CCCccEEEEEeCccC
Q 046405 334 EKVG----------------HHDKMGMNVIPLKDI 352 (538)
Q Consensus 334 ~~~~----------------~d~~lG~~~i~l~~l 352 (538)
.... .+..||.+.++|-+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5422 135677777776653
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.052 Score=48.56 Aligned_cols=93 Identities=24% Similarity=0.334 Sum_probs=61.7
Q ss_pred eEEEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCC-CceeeeecCCCCCceeeeEEEEEEe--C-CCCCeEEEEEEec
Q 046405 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKL-PSKKTTVKHRNLNPEWNEEFGLVVK--D-PEYQALELQVYDW 333 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~ 333 (538)
..++|++....++...+ ....+-||.+.+ +++.. ....|.......++.|||...|++. + +....|.+.+|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35778888888776521 234567777765 43322 2223333333368999999999864 2 3367899999998
Q ss_pred CCCC--CCCccEEEEEeCccCC
Q 046405 334 EKVG--HHDKMGMNVIPLKDIT 353 (538)
Q Consensus 334 ~~~~--~d~~lG~~~i~l~~l~ 353 (538)
+..+ .+..||.+.++|-+-.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCCCCcceEEEEEeEEeEccc
Confidence 7544 4678999999987753
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.028 Score=61.28 Aligned_cols=90 Identities=22% Similarity=0.379 Sum_probs=68.7
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC---C-CCceeeeecC-CCCCceeeeE-EEEE-EeCCCCCeEEEEEE
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD---K-LPSKKTTVKH-RNLNPEWNEE-FGLV-VKDPEYQALELQVY 331 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~---~-~~~~~T~v~~-~t~nP~Wne~-f~f~-v~~~~~~~L~v~v~ 331 (538)
.+.+.|+|+++.=|..++ ...||.|.+-+- . ...++|++.. ++.||+|+|+ |.|. |--++-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 578999999999887665 358999998432 1 2345777766 6789999965 7775 33455678999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCC
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEE 356 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~ 356 (538)
+.+ ..++|+=.+|+..+..+-
T Consensus 778 eEg----gK~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ccC----CceeeeeccchhcccCcc
Confidence 975 469999999999998873
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.091 Score=47.79 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=63.8
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCCCc-eeeeecC----CCCCceeeeEEEEEEe---CCCCCeEEE
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLPS-KKTTVKH----RNLNPEWNEEFGLVVK---DPEYQALEL 328 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~-~~T~v~~----~t~nP~Wne~f~f~v~---~~~~~~L~v 328 (538)
...+.|+|.++.+++........|-|+.+.+ +++.... ..|+... -...+.|||...|++. -+.+..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3468899999999987664456788998876 4433211 1333211 1235779999998874 233678999
Q ss_pred EEEecCCCC---------CCCccEEEEEeCccC
Q 046405 329 QVYDWEKVG---------HHDKMGMNVIPLKDI 352 (538)
Q Consensus 329 ~v~d~~~~~---------~d~~lG~~~i~l~~l 352 (538)
.+|+....+ .+..||.+.++|-+-
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999976543 356889998888764
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.47 Score=41.51 Aligned_cols=115 Identities=22% Similarity=0.307 Sum_probs=75.9
Q ss_pred eEEEEEEeeeccCCCCCCCCCeEEEEEcCee---EEeecc-cCCCCCcCcceEEEEecCC---C----CCCeEEEEEEEc
Q 046405 418 GLLVVILHEAQDVEGKYHTNPSARILFRGEE---KKTKRI-KKNRDPRWEEEFQFTLEEP---P----TDDKLHVEVIST 486 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~---~kT~v~-~~t~nP~wne~f~f~v~~~---~----~~~~l~v~V~d~ 486 (538)
-.+.+.+++..+++. ....-||+..-++.. .+|... .....-.|||.|.+.+.-. . ....+.+.|+..
T Consensus 7 f~~~l~i~~l~~~p~-~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~ 85 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEV 85 (143)
T ss_pred EEEEEEEEEeECcCC-CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEe
Confidence 456788888888876 223334444444443 234332 3456678999999887621 0 122578888876
Q ss_pred cCCCCCCCCCCccEEEEEecchhccc--ceeceEEEcCCC--CCeEEEEEEEEEe
Q 046405 487 SSRMGLLHPKETLGYIGINLADVVNN--KRINEKYHLIDS--KNGRIQIELQWRA 537 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~L~~~--~~G~i~l~~~wkp 537 (538)
... ++...+|.+.|+|.+.... ......++|... .+..+++++++.+
T Consensus 86 ~~~----~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 86 DGS----GKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSE 136 (143)
T ss_pred cCC----CccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEE
Confidence 321 1236999999999999984 456788999876 3578888888765
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.24 Score=45.07 Aligned_cols=73 Identities=22% Similarity=0.218 Sum_probs=46.3
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCCCceeeeecCCCCCceeeeEEEEEEe--C-CCCCeEEEEEEecC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLPSKKTTVKHRNLNPEWNEEFGLVVK--D-PEYQALELQVYDWE 334 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~--~-~~~~~L~v~v~d~~ 334 (538)
.++|+|.++..+ ..+......-||++.+ +++.....+|+...-+.++.|||...|++. + +....|.|.||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 577888888633 3222222335666544 433332335666666778999999888865 2 23678999999974
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.15 Score=45.50 Aligned_cols=90 Identities=19% Similarity=0.338 Sum_probs=61.2
Q ss_pred eEEEEEEeeeccCCC--CCCCCCeEEEEE--cCee----EEeecccCCCCCcCcceEEEEe--cCCCCCCeEEEEEEEcc
Q 046405 418 GLLVVILHEAQDVEG--KYHTNPSARILF--RGEE----KKTKRIKKNRDPRWEEEFQFTL--EEPPTDDKLHVEVISTS 487 (538)
Q Consensus 418 g~L~v~v~~a~~L~~--~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v--~~~~~~~~l~v~V~d~~ 487 (538)
..++|.++.+.++.. ....+-||++.+ |++. ..|.......++.|||-.+|.+ .+.|.+..|.+.+|+.+
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 456777888877764 234556666644 4442 2444444447899999988875 45577889999999986
Q ss_pred CCCCCCCCCCccEEEEEecchh
Q 046405 488 SRMGLLHPKETLGYIGINLADV 509 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i~L~~l 509 (538)
... -..+..||.++++|-+-
T Consensus 88 ~~~--~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPG--SKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCC--CCcceEEEEEeEEeEcc
Confidence 420 01357999999999774
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.35 Score=38.23 Aligned_cols=84 Identities=25% Similarity=0.367 Sum_probs=59.3
Q ss_pred CCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCCCCceE
Q 046405 281 SDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREM 360 (538)
Q Consensus 281 ~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~ 360 (538)
++-.+++.+++... .+|.-+. ..+..|++.|.+.+.. +.+|+|.||=+|- ..+.|-..+.|++... ..
T Consensus 9 ~eV~avLklDn~~V--gqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~----~~ 76 (98)
T cd08687 9 SEVSAVLKLDNTVV--GQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH----EV 76 (98)
T ss_pred cceEEEEEEcCeEE--eeccccc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc----cc
Confidence 67888999986554 3665543 3478899999999965 5789999998763 4467777888887322 22
Q ss_pred EEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 361 TLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 361 ~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
.++ -.+.|.+..+++|
T Consensus 77 ~~~------------lepqg~l~~ev~f 92 (98)
T cd08687 77 QLD------------MEPQLCLVAELTF 92 (98)
T ss_pred eec------------cccccEEEEEEEe
Confidence 232 2457888888877
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.14 Score=49.54 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=76.8
Q ss_pred CCceeEEEEEEEEecCCCcCCC--CCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEec
Q 046405 256 QKPVGILNVKVLRAMKLKKKDL--IGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDW 333 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 333 (538)
....|+|.+++..+++|+-... .-.-+-||++..+.+. ..||.+......=.|.|+|+..+.+. ..+.+-||.+
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW 122 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSW 122 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeecccc--eeeeEEEeec
Confidence 4457999999999999974422 2345899999987544 34777766666667999999988764 5788999998
Q ss_pred CCCCCCCccEEEEEeCccCCCC-CCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 334 EKVGHHDKMGMNVIPLKDITPE-EPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
+.-.++++.-.-.+.+..+... ..+..-+. -.++|++.+.+.+.
T Consensus 123 ~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~------------lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVVDRQSPDRVVALY------------LEPRGQPPLRLPLA 167 (442)
T ss_pred CchhhccccccchhhhhhhhhcCCcceeeee------------cccCCCCceecccC
Confidence 8766666533333333333322 12222222 24567777776553
|
|
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.18 Score=45.16 Aligned_cols=74 Identities=23% Similarity=0.340 Sum_probs=52.9
Q ss_pred CCCCcEEEEEE--cCCCCC-ceeeeecCCCCCceeeeEEEEEEeC---CCCCeEEEEEEecCCCCCCCccEEEEEeCccC
Q 046405 279 GASDPYVKLKL--TDDKLP-SKKTTVKHRNLNPEWNEEFGLVVKD---PEYQALELQVYDWEKVGHHDKMGMNVIPLKDI 352 (538)
Q Consensus 279 g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l 352 (538)
..+|-||.+.+ ++.... ...|+.+.-+..+.|||...|++.- +....|.|+|||.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45688888876 333221 1255555556678899999998752 23678999999987666677999999998775
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.12 Score=56.67 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=67.8
Q ss_pred CceEEEEEEeeeccCCCCCCCCCeEEEEEcC-------eeEEeeccc-CCCCCcCcc-eEEEEecCCCCCCeEEEEEEEc
Q 046405 416 GGGLLVVILHEAQDVEGKYHTNPSARILFRG-------EEKKTKRIK-KNRDPRWEE-EFQFTLEEPPTDDKLHVEVIST 486 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~-------~~~kT~v~~-~t~nP~wne-~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
-++.+.|+|++|+=|..+ ....||+|.+-| +.++|+++. ++.||+|+| .|.|.-.-.|.-..|.|.|++.
T Consensus 701 IA~t~sV~VISgqFLSdr-kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDR-KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred EEeeEEEEEEeeeecccc-ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 457899999999988763 566999999854 335888776 579999996 5777654445667999999998
Q ss_pred cCCCCCCCCCCccEEEEEecchhcc
Q 046405 487 SSRMGLLHPKETLGYIGINLADVVN 511 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l~~ 511 (538)
+ ..++|+-.+|+..+-.
T Consensus 780 g--------gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 780 G--------GKFIGQRILPVDGLNA 796 (1189)
T ss_pred C--------CceeeeeccchhcccC
Confidence 5 3799999999987754
|
|
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.27 Score=44.01 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=52.0
Q ss_pred CCCCeEEEEE--cCee----EEeecccCCCCCcCcceEEEEec--CCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEec
Q 046405 435 HTNPSARILF--RGEE----KKTKRIKKNRDPRWEEEFQFTLE--EPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINL 506 (538)
Q Consensus 435 ~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L 506 (538)
.++-||++.+ +++. ..|+.+.-+..+.|||-.+|++. +.|.+..|.|.||+.... +....+|.++++|
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~----~~~~~vg~~~~~l 104 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT----GKAVPFGGTTLSL 104 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC----CCceEEEEEEEee
Confidence 4667777755 4432 25655555677899998888875 556788999999998642 2467999999999
Q ss_pred chh
Q 046405 507 ADV 509 (538)
Q Consensus 507 ~~l 509 (538)
-+-
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 774
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.79 Score=41.73 Aligned_cols=92 Identities=11% Similarity=0.106 Sum_probs=57.9
Q ss_pred eEEEEEEeeeccCCCCCC--CCCeEEEEE--cCee---EEeecccCCCCCcCcceEEEEec--CCCCCCeEEEEEEEccC
Q 046405 418 GLLVVILHEAQDVEGKYH--TNPSARILF--RGEE---KKTKRIKKNRDPRWEEEFQFTLE--EPPTDDKLHVEVISTSS 488 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~~~--~dpyv~v~~--~~~~---~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~~ 488 (538)
..++|.|+++.++..... ..-||++.+ |+.. .+|+...-+.++.|||-.+|.+. +.|....|.|.||+...
T Consensus 10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 356777777764433222 334555533 4432 25665666788999998888775 55677899999998632
Q ss_pred C------CC------CCCCCCccEEEEEecchh
Q 046405 489 R------MG------LLHPKETLGYIGINLADV 509 (538)
Q Consensus 489 ~------~g------~~~~d~~lG~~~i~L~~l 509 (538)
. .| .-..+..||.+++.|-+-
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcC
Confidence 1 00 001256899999999763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.5 Score=41.45 Aligned_cols=70 Identities=21% Similarity=0.322 Sum_probs=46.9
Q ss_pred cEEEEEE--cCCCCC--ceeeeecCCC-CCceeeeEEEEEEe---CCCCCeEEEEEEecCCCCCC----CccEEEEEeCc
Q 046405 283 PYVKLKL--TDDKLP--SKKTTVKHRN-LNPEWNEEFGLVVK---DPEYQALELQVYDWEKVGHH----DKMGMNVIPLK 350 (538)
Q Consensus 283 pyv~v~~--~~~~~~--~~~T~v~~~t-~nP~Wne~f~f~v~---~~~~~~L~v~v~d~~~~~~d----~~lG~~~i~l~ 350 (538)
-||.+.+ |++... ...|+....+ .++.|||...|++. -|....|.|.||+.+....+ ..||.+.++|-
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lF 83 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLF 83 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeE
Confidence 3455544 444432 2255555555 79999999999875 23478899999998765554 68999999988
Q ss_pred cC
Q 046405 351 DI 352 (538)
Q Consensus 351 ~l 352 (538)
+-
T Consensus 84 d~ 85 (142)
T PF00792_consen 84 DY 85 (142)
T ss_dssp -T
T ss_pred CC
Confidence 76
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=92.02 E-value=1.8 Score=39.21 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=54.5
Q ss_pred CCCcEEEEEEcCCCCCceeeeecC--CCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCCCCccEEEEEeCccCCCC
Q 046405 280 ASDPYVKLKLTDDKLPSKKTTVKH--RNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPE 355 (538)
Q Consensus 280 ~~dpyv~v~~~~~~~~~~~T~v~~--~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~ 355 (538)
+..-|+++.++++.+ .+|+... ....-.+||.|.+.+... -+.|.++||.... ..+..|+++.+|+-.....
T Consensus 36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 446799999987665 3555443 333456889999999775 5789999999986 6789999999998766544
|
|
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=91.69 E-value=1.9 Score=38.93 Aligned_cols=69 Identities=14% Similarity=0.267 Sum_probs=52.0
Q ss_pred CCCCeEEEEEcCeeE-Eeeccc--CCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhc
Q 046405 435 HTNPSARILFRGEEK-KTKRIK--KNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVV 510 (538)
Q Consensus 435 ~~dpyv~v~~~~~~~-kT~v~~--~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~ 510 (538)
...-|+++.++++.. +|+... ....-.|||.|.+.+...| +.|.++||.... ..+..|+.+.+++-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P--esi~l~i~E~~~-----~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP--ESIKLEIYEKSG-----LSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC--CEEEEEEEEccC-----ccceEEEEEEeeCCCCc
Confidence 456799999998765 554433 2333458999999998865 789999999863 46899999999975543
|
|
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=91.59 E-value=2.5 Score=33.55 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=56.0
Q ss_pred CCCeEEEEEcCeeE-EeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccce
Q 046405 436 TNPSARILFRGEEK-KTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKR 514 (538)
Q Consensus 436 ~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~ 514 (538)
.+-.+.+.+.++.. +|.- +...+..|++.|++.+.. ...|.|.|+=+|- ..+.|-.-+.|.+..+
T Consensus 9 ~eV~avLklDn~~VgqT~W-k~~s~q~WDQ~Fti~LdR---sRELEI~VywrD~-------RslCav~~lrLEd~~~--- 74 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQW-KPKSNQAWDQSFTLELER---SRELEIAVYWRDW-------RSLCAVKFLKLEDERH--- 74 (98)
T ss_pred cceEEEEEEcCeEEeeccc-cccccccccceeEEEeec---ccEEEEEEEEecc-------hhhhhheeeEhhhhcc---
Confidence 46677888877654 5543 334788999999999975 3689999987763 2577778888888332
Q ss_pred eceEEEcCCCCCeEEEEEEEE
Q 046405 515 INEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 515 ~~~~~~L~~~~~G~i~l~~~w 535 (538)
....++. ++|.+..++.|
T Consensus 75 -~~~~~le--pqg~l~~ev~f 92 (98)
T cd08687 75 -EVQLDME--PQLCLVAELTF 92 (98)
T ss_pred -cceeccc--cccEEEEEEEe
Confidence 1223333 46777666654
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=90.86 E-value=1.4 Score=36.03 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=47.2
Q ss_pred EEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCCC-ceeeeecCCCCCceeeeEEEEEEe---CCCCCeEEEEEEecC
Q 046405 262 LNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLP-SKKTTVKHRNLNPEWNEEFGLVVK---DPEYQALELQVYDWE 334 (538)
Q Consensus 262 L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~---~~~~~~L~v~v~d~~ 334 (538)
+.+++..+.+.........++-||.+.+ +++... ...|+.+.-...+.|||...|++. -+....|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566777777655433233588888876 433321 224555544556899999988764 233678999999965
|
Outlier of C2 family. |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.2 Score=40.39 Aligned_cols=93 Identities=22% Similarity=0.300 Sum_probs=62.4
Q ss_pred ceEEEEEEeeeccCCCC---CCCCCeEEEEE--cCeeE----Eeeccc----CCCCCcCcceEEEEec--CCCCCCeEEE
Q 046405 417 GGLLVVILHEAQDVEGK---YHTNPSARILF--RGEEK----KTKRIK----KNRDPRWEEEFQFTLE--EPPTDDKLHV 481 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~---~~~dpyv~v~~--~~~~~----kT~v~~----~t~nP~wne~f~f~v~--~~~~~~~l~v 481 (538)
...+.|+|.++.+++.. ...+-|+++.+ |++.. .|+... -...+.|||-.+|.+. +.|.+..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 45788999999999863 24677888754 54432 444322 2346779998888775 5567789999
Q ss_pred EEEEccCCC-C----CCCCCCccEEEEEecchh
Q 046405 482 EVISTSSRM-G----LLHPKETLGYIGINLADV 509 (538)
Q Consensus 482 ~V~d~~~~~-g----~~~~d~~lG~~~i~L~~l 509 (538)
.+|+..... + .-..+..||.++++|-+-
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999876420 0 000356899999999773
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.12 E-value=0.84 Score=44.36 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=72.2
Q ss_pred CCceEEEEEEeeeccCCCC----C-CCCCeEEEEEcCeeE-EeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccC
Q 046405 415 EGGGLLVVILHEAQDVEGK----Y-HTNPSARILFRGEEK-KTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSS 488 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~~----~-~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~ 488 (538)
..+|+|.+.+..+++|.-. | ..+-||.+....+.. +|.+.....--.|.|.|+..+.+. +.+.+-|+.+..
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~---~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI---EVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc---eeeeEEEeecCc
Confidence 3589999999999998641 2 467799998855433 565555555556899999988764 678888888764
Q ss_pred CCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEEEEEEEE
Q 046405 489 RMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w 535 (538)
.+ -++=+..| -+.+..+. +..-++-+-|+-.++|++.+++-+
T Consensus 125 q~--RHKLC~~g--~l~~~~v~-rqspd~~~Al~lePrgq~~~r~~~ 166 (442)
T KOG1452|consen 125 QR--RHKLCHLG--LLEAFVVD-RQSPDRVVALYLEPRGQPPLRLPL 166 (442)
T ss_pred hh--hccccccc--hhhhhhhh-hcCCcceeeeecccCCCCceeccc
Confidence 20 01123355 23333332 223355566665667887776643
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=89.00 E-value=1 Score=39.43 Aligned_cols=56 Identities=21% Similarity=0.509 Sum_probs=40.5
Q ss_pred EeecccCC-CCCcCcceEEEEe--cCCCCCCeEEEEEEEccCCCCCCCCC----CccEEEEEecchh
Q 046405 450 KTKRIKKN-RDPRWEEEFQFTL--EEPPTDDKLHVEVISTSSRMGLLHPK----ETLGYIGINLADV 509 (538)
Q Consensus 450 kT~v~~~t-~nP~wne~f~f~v--~~~~~~~~l~v~V~d~~~~~g~~~~d----~~lG~~~i~L~~l 509 (538)
.|+...-+ .++.|||.++|.+ .+.|.+..|.|.|+..+.. ..+ ..||.++++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~----~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK----KKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS----TTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC----CccccceeEEEEEEEEeECC
Confidence 56555555 7999999877775 5667888999999988753 222 6899999999775
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=88.81 E-value=3.7 Score=37.66 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=41.4
Q ss_pred CceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEecCCCC--CCCccEEEEEeCcc
Q 046405 295 PSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDWEKVG--HHDKMGMNVIPLKD 351 (538)
Q Consensus 295 ~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~~~~~--~d~~lG~~~i~l~~ 351 (538)
..++|.+...+.+|.|+|++.+.+... ...-|.|+.++...-. ....+|.+.+||-+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 346888999999999999999988643 3567888887753221 12568888888843
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=86.64 E-value=3.9 Score=37.55 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=34.5
Q ss_pred ceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEEecCCCC-C--CCccEEEEEeCcc
Q 046405 296 SKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVYDWEKVG-H--HDKMGMNVIPLKD 351 (538)
Q Consensus 296 ~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~~~~~-~--d~~lG~~~i~l~~ 351 (538)
...|.+..++.+|.|+|+|.+.+.... ..-|.|++++...-. + +..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 457888888899999999999886543 567899999865322 1 2689999999988
|
|
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=85.88 E-value=7.1 Score=36.00 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=41.5
Q ss_pred CceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEecCCC-CC---CCccEEEEEeCc
Q 046405 295 PSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDWEKV-GH---HDKMGMNVIPLK 350 (538)
Q Consensus 295 ~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~~~~-~~---d~~lG~~~i~l~ 350 (538)
..++|.+...+.+|.|+|++.+.+... ...-|.|++++.... .+ ....|.+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 346888888899999999999988633 366788998875421 12 246888888885
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PTZ00447 apical membrane antigen 1-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.13 E-value=8.5 Score=38.15 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=75.8
Q ss_pred CceEEEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeecccCCCCC--cCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 416 GGGLLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDP--RWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP--~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
..-.|-|.|++..++... ..-|+.+..|....+|..+.-+..- .-++.....++. ....|.+.++-.. +
T Consensus 56 RkF~LLVeI~EI~~i~k~--khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ--cDnTLkI~lfKKk-----L 126 (508)
T PTZ00447 56 RTFYLLVKINEIFNINKY--KHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ--CDETLRVDLFTTK-----L 126 (508)
T ss_pred ceeeEEEEehhhhccccc--eeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee--cCceEEEEEEecc-----c
Confidence 455677888888777653 5679999999888888665443322 234555555554 3567999998775 5
Q ss_pred CCCCccEEEEEecch-hcccc-eeceEEEcCCCC--CeEEEEEE
Q 046405 494 HPKETLGYIGINLAD-VVNNK-RINEKYHLIDSK--NGRIQIEL 533 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~-l~~~~-~~~~~~~L~~~~--~G~i~l~~ 533 (538)
.+..-||.+.+.++. ++++. ..++||-+...+ .++|.|++
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSF 170 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSF 170 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEe
Confidence 678899999999975 44444 358999997654 47777765
|
|
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=81.27 E-value=7.6 Score=31.65 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=44.0
Q ss_pred EEEEEeeeccCCCC--C-CCCCeEEEEE--cCee----EEeecccCCCCCcCcceEEEEec--CCCCCCeEEEEEEEcc
Q 046405 420 LVVILHEAQDVEGK--Y-HTNPSARILF--RGEE----KKTKRIKKNRDPRWEEEFQFTLE--EPPTDDKLHVEVISTS 487 (538)
Q Consensus 420 L~v~v~~a~~L~~~--~-~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~ 487 (538)
+.+.+..+++.... . ..+-||++.+ |++. ..|+.+.-...+.|||-.+|.+. +.|.+..|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 44555666555432 1 2366777754 4443 25555545666899998888765 5567789999999864
|
Outlier of C2 family. |
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.24 E-value=2.1 Score=47.70 Aligned_cols=97 Identities=12% Similarity=0.227 Sum_probs=75.5
Q ss_pred CCCCeEEEEEcCeeE-EeecccCC-CCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhccc
Q 046405 435 HTNPSARILFRGEEK-KTKRIKKN-RDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNN 512 (538)
Q Consensus 435 ~~dpyv~v~~~~~~~-kT~v~~~t-~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~ 512 (538)
..++|+.+.+..... +|....+. .+|.|.+.|+..+... ...+++.|-+.+- .+.-..+|.+.++...+..+
T Consensus 137 ~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~--~g~v~~~~~~~~~----~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 137 TLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK--AGYVIFRVKGARV----PGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred hccchheeeechhhhhchhhhhcccccchhhhhcccccccc--ccEEEEeecCCcc----ccceeEEEEeccchhhhhcc
Confidence 478999999977654 88877776 9999999998888763 4678888877763 34478999999999999998
Q ss_pred ceeceEEEcCCCC------CeEEEEEEEEEe
Q 046405 513 KRINEKYHLIDSK------NGRIQIELQWRA 537 (538)
Q Consensus 513 ~~~~~~~~L~~~~------~G~i~l~~~wkp 537 (538)
..+..|+++.+.. ...+.++++++|
T Consensus 211 ~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~ 241 (887)
T KOG1329|consen 211 HRIGGWFPILDNDGKPHQKGSNESLRLGFTP 241 (887)
T ss_pred ccccceeeeeccCCccccCCcccceEEeeEe
Confidence 8889999987542 345556677765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 538 | ||||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 1e-11 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 1e-11 | ||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 2e-11 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 9e-11 | ||
| 3m7f_B | 176 | Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX | 2e-10 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 4e-10 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 4e-10 | ||
| 1rsy_A | 152 | Structure Of The First C2-domain Of Synaptotagmin I | 3e-08 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 3e-08 | ||
| 3f00_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Wit | 3e-08 | ||
| 3f04_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Len | 3e-08 | ||
| 1byn_A | 128 | Solution Structure Of The Calcium-Bound First C2-Do | 4e-08 | ||
| 2cm5_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin Le | 2e-07 | ||
| 2cm6_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin3a | 2e-07 | ||
| 3rpb_A | 140 | The C2b-Domain Of Rabphilin: Structural Variations | 2e-07 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 4e-07 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 4e-07 | ||
| 2uzp_A | 144 | Crystal Structure Of The C2 Domain Of Human Protein | 5e-07 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 5e-07 | ||
| 1a25_A | 149 | C2 Domain From Protein Kinase C (Beta) Length = 149 | 6e-07 | ||
| 2chd_A | 142 | Crystal Structure Of The C2a Domain Of Rabphilin-3a | 9e-07 | ||
| 2k3h_A | 140 | Structural Determinants For Ca2+ And Pip2 Binding B | 1e-06 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 2e-06 | ||
| 1tjm_A | 159 | Crystallographic Identification Of Sr2+ Coordinatio | 9e-06 | ||
| 1k5w_A | 152 | Three-Dimensional Structure Of The Synaptotagmin 1 | 1e-05 | ||
| 2lha_A | 151 | Solution Structure Of C2b With Ip6 Length = 151 | 1e-05 | ||
| 1wfj_A | 136 | C2 Domain-Containing Protein From Putative Elicitor | 5e-05 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 1e-04 | ||
| 1w15_A | 153 | Rat Synaptotagmin 4 C2b Domain In The Presence Of C | 1e-04 | ||
| 3pyc_A | 132 | Crystal Structure Of Human Smurf1 C2 Domain Length | 3e-04 | ||
| 2jqz_A | 131 | Solution Structure Of The C2 Domain Of Human Smurf2 | 3e-04 | ||
| 1bci_A | 138 | C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim | 6e-04 | ||
| 3n5a_A | 138 | Synaptotagmin-7, C2b-Domain, Calcium Bound Length = | 7e-04 | ||
| 1rlw_A | 126 | Calcium-Phospholipid Binding Domain From Cytosolic | 7e-04 | ||
| 1cjy_A | 749 | Human Cytosolic Phospholipase A2 Length = 749 | 8e-04 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 8e-04 |
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
| >pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143 | Back alignment and structure |
|
| >pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143 | Back alignment and structure |
|
| >pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128 | Back alignment and structure |
|
| >pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166 | Back alignment and structure |
|
| >pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166 | Back alignment and structure |
|
| >pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149 | Back alignment and structure |
|
| >pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142 | Back alignment and structure |
|
| >pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
| >pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159 | Back alignment and structure |
|
| >pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152 | Back alignment and structure |
|
| >pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151 | Back alignment and structure |
|
| >pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153 | Back alignment and structure |
|
| >pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain Length = 132 | Back alignment and structure |
|
| >pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2 Length = 131 | Back alignment and structure |
|
| >pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138 | Back alignment and structure |
|
| >pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138 | Back alignment and structure |
|
| >pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126 | Back alignment and structure |
|
| >pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 6e-45
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 5/154 (3%)
Query: 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTD---DKLPSKKTTVKHRNLNPEWN 311
++ VKV+ + L KKD++GASDPYV++ L D L S +T ++LNP+WN
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 312 EEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPN 371
EE V + +V+D ++ D +G +PL + E PR K+ +
Sbjct: 63 EEILFRVLPQR-HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH 121
Query: 372 -DTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPN 404
+ + +G + +++ Y P G E
Sbjct: 122 PRSHKSRVKGYLRLKMTYLPKNGSEDENADQAEE 155
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 15/109 (13%)
Query: 418 GLLVVILHEAQDVEGKYHTNPS---------ARILFRGEEKKTKRIKKNRDPRWEEEFQF 468
++ V + + K S + +TK IKK+ +P+W EE F
Sbjct: 8 RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67
Query: 469 TLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINE 517
+ P ++ EV L + LG + + L + E
Sbjct: 68 RV--LPQRHRILFEVFD----ENRLTRDDFLGQVDVPLYPLPTENPRME 110
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 8e-45
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Query: 252 AKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWN 311
+ P G L V ++ A L+ D + DPYV+L K + PEWN
Sbjct: 2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWN 59
Query: 312 EEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPN 371
E F V + + L+ +++D + D +G IPL+ + E + N
Sbjct: 60 ETFIFTVSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS-------IPPTAYN 111
Query: 372 DTRNEKSRGQVVVEVLYKPFKGDE 395
++E+ +G++ V + +KP
Sbjct: 112 VVKDEEYKGEIWVALSFKPSGPSS 135
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-09
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 27/141 (19%)
Query: 409 APEGTPEGGGLLVVILHEAQ-----DVEGKYHTNPSARILFRGEEKKTKRIK-KNRDPRW 462
G+ G L V+L A+ D +P ++ R +++K+ + P W
Sbjct: 1 GSSGSSGPHGTLEVVLVSAKGLEDADFLNN--MDPYVQLTCRTQDQKSNVAEGMGTTPEW 58
Query: 463 EEEFQFTLEEPPTDDKLHVEV-----ISTSSRMGLLHPKETLGYIGINLADVVNNKRI-N 516
E F FT+ E +L ++ + + +G I L V I
Sbjct: 59 NETFIFTVSEG--TTELKAKIFDKDVGTED---------DAVGEATIPLEPVFVEGSIPP 107
Query: 517 EKYHLIDSKN--GRIQIELQW 535
Y+++ + G I + L +
Sbjct: 108 TAYNVVKDEEYKGEIWVALSF 128
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 6e-44
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK---LPSKKTTVKHRNLNPEWN 311
++ I+ V+V+ + L KKD++GASDPYV++ L D L S +T ++LNP+WN
Sbjct: 15 DEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWN 74
Query: 312 EEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPN 371
EE V + L +V+D ++ D +G +PL + E PR K+ +
Sbjct: 75 EEILFRVHPQQ-HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLH 133
Query: 372 D-TRNEKSRGQVVVEVLYKP 390
+ + +G + +++ Y P
Sbjct: 134 PRSHKSRVKGYLRLKMTYLP 153
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 6e-05
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 414 PEGGGLLVVILHEAQDVEGKYHTNPS---------ARILFRGEEKKTKRIKKNRDPRWEE 464
E ++ V + + K S + +TK IKK+ +P+W E
Sbjct: 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNE 75
Query: 465 EFQFTLEEPPTDDKLHVEV 483
E F + P +L EV
Sbjct: 76 EILFRV--HPQQHRLLFEV 92
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 7e-43
Identities = 65/288 (22%), Positives = 112/288 (38%), Gaps = 51/288 (17%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEE--FGLV 317
L V +++A +L D+ G SDPYVK+ L DK +T V + LNP +NE+ F +
Sbjct: 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 78
Query: 318 VKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEK 377
+ + L + VYD+++ HD +G +P+ + E DL + ++
Sbjct: 79 YSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ----SAEKEEQE 134
Query: 378 SRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQD---VEGKY 434
G + + Y P G L V++ EA++ ++
Sbjct: 135 KLGDICFSLRYVP-------------------------TAGKLTVVILEAKNLKKMDVGG 169
Query: 435 HTNPSARILF-----RGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDK-LHVEVISTSS 488
++P +I R ++KKT K +P + E F F + + V V+
Sbjct: 170 LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD--- 226
Query: 489 RMGLLHPKETLGYIGINLADVVNNKRINEKYHLID-SKNGRIQIELQW 535
+ + +G + + N E H D N R I QW
Sbjct: 227 -YDKIGKNDAIGKVFVGY-----NSTGAELRHWSDMLANPRRPIA-QW 267
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 1e-41
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVK 319
G+L V V A + K G DP V + D+K KKT LNP WNE ++
Sbjct: 7 GMLRVIVESASNIPKTK-FGKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLR 62
Query: 320 DPEY---QALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNE 376
+L + V D+E +G + +G + LKD+T ++ R + L+ ++ + +
Sbjct: 63 GIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNE---KGQ 119
Query: 377 KSRGQVVVEVLYKPFKGDE 395
+ + + + Y P G
Sbjct: 120 DTGATIDLVIGYDPPSGPS 138
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 4e-11
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 412 GTPEGGGLLVVILHEAQDVEGKYH--TNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFT 469
G+ G+L VI+ A ++ +P ++F+ E+KKTK++ +P W E +F
Sbjct: 1 GSSGSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFD 60
Query: 470 LEEPPTD--DKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKN- 526
L P D L + V + + +G + L D+ ++ + Y LI N
Sbjct: 61 LRGIPLDFSSSLGIIVKD----FETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNE 116
Query: 527 ------GRIQIELQW 535
I + + +
Sbjct: 117 KGQDTGATIDLVIGY 131
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-40
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 252 AKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWN 311
+ K VGIL VKVL+A L D G SDP+ L+L +D+L +T ++NLNPEWN
Sbjct: 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRL---QTHTVYKNLNPEWN 61
Query: 312 EEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPN 371
+ F +KD LE+ V+D + D +G IPL I +P LKN D
Sbjct: 62 KVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYV---LKNKDLE 117
Query: 372 DTRNEKSRGQVVVEV 386
+G + +E+
Sbjct: 118 Q----AFKGVIYLEM 128
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 8e-08
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 418 GLLVVILHEAQ-----DVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEE 472
G+L V + +A D GK ++P + + +T + KN +P W + F F +++
Sbjct: 13 GILQVKVLKAADLLAADFSGK--SDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 473 PPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKR---INEKYHLIDSKNGRI 529
D L V V P + LG + I L + + + + + L + G I
Sbjct: 71 I--HDVLEVTVFDE----DGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVI 124
Query: 530 QIELQW 535
+E+
Sbjct: 125 YLEMDL 130
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 3e-36
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 262 LNVKVLRAMKLKK---KDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVV 318
V VLRA K+ K D++ DPYV+L ++ K+T + ++NP WNE F ++
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 319 KDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366
+ LE+ + D V + +G + + E +E+ +
Sbjct: 65 DPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ 111
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 6e-10
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 14/96 (14%)
Query: 447 EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEV----ISTSSRMGLLHPKETLGYI 502
K+T+ + +P W E F+F L+ + L + + ETLG
Sbjct: 41 SRKRTRHFNNDINPVWNETFEFILDPNQE-NVLEITLMDANYVMD---------ETLGTA 90
Query: 503 GINLADVVNNKRINEKYHLIDSKNGRIQIELQWRAS 538
++ + ++ + +++ L+ +S
Sbjct: 91 TFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVASS 126
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 1e-35
Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 47/264 (17%)
Query: 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEF- 314
L V++L+A+ L KD G SDPYVK+ L D+ +T V + LNP +NE F
Sbjct: 16 LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ 75
Query: 315 -GLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMT--LDLLKNMDPN 371
+ + + + L VYD+++ HD +G V+ E+P + D+L+
Sbjct: 76 FSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEK 135
Query: 372 DTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVE 431
G++ + Y P GLL V + +A +++
Sbjct: 136 AD-----LGELNFSLCYLPT-------------------------AGLLTVTIIKASNLK 165
Query: 432 GKYHT---NPSARILF-----RGEEKKTKRIKKNRDPRWEEEFQFTL-EEPPTDDKLHVE 482
T +P + R +++KT K +P + E F + E + L +
Sbjct: 166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 225
Query: 483 VISTSSRMGLLHPKETLGYIGINL 506
V+ + E +G +
Sbjct: 226 VVDYDC----IGHNEVIGVCRVGP 245
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 6e-21
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNE 312
G+L V +++A LK DL G SDPYVK L + +L +KT++K LNP +NE
Sbjct: 147 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNE 206
Query: 313 EFGLVVKDPEYQ--ALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKN 367
V + L + V D++ +GH++ +G+ + + P RE ++L N
Sbjct: 207 ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG-REHWAEMLAN 262
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 1e-34
Identities = 25/131 (19%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 409 APEGTPEGGGL-LVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPR-WEEEF 466
+ P G + L+V L ++ G+ + A++ FRG+ ++ ++ D ++E F
Sbjct: 11 SSGLVPRGSHMALIVHLKTVSELRGRA--DRIAKVTFRGQSFYSRVLENCEDVADFDETF 68
Query: 467 QFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525
++ + ++ L +++ + + + +G + L VV R+ LID
Sbjct: 69 RWPVASSIDRNEVLEIQIFN----YSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDN 124
Query: 526 NGRIQIELQWR 536
N I+ L
Sbjct: 125 NAIIKTSLSME 135
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 1e-13
Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 17/132 (12%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNP-EWNEEFGLVVKD 320
L V + +L G +D K+ + V + +++E F V
Sbjct: 23 LIVHLKTV-----SELRGRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVAS 74
Query: 321 PEYQA--LELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKS 378
+ LE+Q++++ KV + +G + L+ + E E++ L+ D N
Sbjct: 75 SIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLI------DDNNAII 128
Query: 379 RGQVVVEVLYKP 390
+ + +EV Y+
Sbjct: 129 KTSLSMEVRYQA 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 4e-33
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEF---GL 316
L VK+++A +L KD G SDP+VK+ L DK +T VK +NLNP WNE F G
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 317 VVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364
+ + L LQV D+++ +D +G IPL + + + DL
Sbjct: 86 PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 418 GLLVVILHEAQD---VEGKYHTNPSARILF---RGEEKKTKRIKKNRDPRWEEEFQFTL- 470
L V + +AQ+ + ++P +I + + +TK +KN +P W E F F
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 471 -EEPPTDDKLHVEV 483
E L+++V
Sbjct: 86 PYEKVVQRILYLQV 99
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 5e-33
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 25/155 (16%)
Query: 243 ALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVK 302
A++ ++D K +++ V+ A L+ KD G+SDPYV +++ K K+T
Sbjct: 3 AVKQSVLD---GTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTI 56
Query: 303 HRNLNPEWNEEFGLVVKDPEYQALELQVYDW-----------EKVGHHDKMGMNVIPLKD 351
+ NLNP W E F + ++++V D K D +G +I ++
Sbjct: 57 YGNLNPVWEENFHFECHNSS-DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRT 115
Query: 352 ITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEV 386
++ E LD T G + + +
Sbjct: 116 LSGEMDVWYNLD-------KRTDKSAVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 4e-10
Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 15/141 (10%)
Query: 407 QKAPEGTPEGGGLLVVILHEAQDVEGKYHT---NPSARILFRGEEKKTKRIKKNRDPRWE 463
Q +GT + + + + AQ ++ K T +P + +K+TK I N +P WE
Sbjct: 6 QSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWE 65
Query: 464 EEFQFTLEEPPTDDKLHVEV-------ISTSSRMGLLHPKETLGYIGINLADVVNNKRIN 516
E F F D++ V V S + + LG I + + +
Sbjct: 66 ENFHFECHNS--SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVW 123
Query: 517 ---EKYHLIDSKNGRIQIELQ 534
+K + +G I++ +
Sbjct: 124 YNLDKRTDKSAVSGAIRLHIS 144
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 7e-33
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP 321
+ + VL A L KKD DP+ K+ + T L+P+WN+ + L V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQ-CHSTDTVKNTLDPKWNQHYDLYVGKT 65
Query: 322 EYQALELQVYDWEKVGHHDK---MGMNVIPLKDITP-EEPREMTLDLLKNMDPNDTRNEK 377
++ + V++ +K+ +G + I+ ++ LDL K ++P+D +
Sbjct: 66 --DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK-LNPSD--TDA 120
Query: 378 SRGQVVVEVLYK 389
RGQ+VV + +
Sbjct: 121 VRGQIVVSLQTR 132
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-06
Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 27/135 (20%)
Query: 420 LVVILHEAQ-----DVEGKYHTNPSARILFRGEE--KKTKRIKKNRDPRWEEEFQFTLEE 472
+ + + A+ D +P A+I+ G T +K DP+W + + + +
Sbjct: 7 IRLTVLCAKNLAKKDFFRL--PDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK 64
Query: 473 PPTDDKLHVEVISTSSRMGLLHPKETLGYIG---INLADVVNNKRINEKYHLIDSKN--- 526
D + + V + +H K+ G++G + + K + + N
Sbjct: 65 T---DSITISVWNHK----KIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSD 117
Query: 527 -----GRIQIELQWR 536
G+I + LQ R
Sbjct: 118 TDAVRGQIVVSLQTR 132
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-31
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEF--- 314
L ++RA LK D G +DPYVKL L K +T NP WNE
Sbjct: 29 SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88
Query: 315 GLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNM 368
G+ +D + + L + V D +K GH++ +G LK + + + + L + +
Sbjct: 89 GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVI 142
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 3e-31
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVK 319
L V +++A +L D+ G SDPYVK+ L DK +T V + LNP +NE+F V
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 320 --DPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365
+ + L + VYD+++ HD +G +P+ + E DL
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 15/116 (12%)
Query: 418 GLLVVILHEAQD---VEGKYHTNPSARILF---RGEEKKTKRIKKNRDPRWEEEFQFTL- 470
L+V + +A + ++ ++P ++ + ++ +TK +K +P + E+F F +
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 471 EEPPTDDKLHVEVIS--TSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524
L + V S+ + +G + + V E L +
Sbjct: 94 YSELGGKTLVMAVYDFDRFSK------HDIIGEFKVPMNTVDFGHVTEEWRDLQSA 143
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 2e-30
Identities = 22/150 (14%), Positives = 56/150 (37%), Gaps = 6/150 (4%)
Query: 235 ANMYLWPKALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL 294
N+Y + + ++ L + V+ A + K PYV++ + D +
Sbjct: 12 ENLYFQGMSDSGSQLGSMGSLTMK-SQLQITVISAKLKENKKNWFGPSPYVEVTV-DGQ- 68
Query: 295 PSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITP 354
SKKT + +P+W + ++V L +V+ + + +G + + +
Sbjct: 69 -SKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLK 125
Query: 355 EEPREMTLDLLKNMDPNDTRNEKSRGQVVV 384
++ ++ D ++ G + +
Sbjct: 126 SNNMKLEEVVVTLQLGGDKEPTETIGDLSI 155
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 2e-12
Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 20/145 (13%)
Query: 404 NSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDP 460
+ Q G+ L + + A+ E K + +P + G+ KKT++ P
Sbjct: 22 SGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSP 81
Query: 461 RWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVV--NNKRINEK 518
+W++ + KLH V S + L LG +++ + + NN ++ E
Sbjct: 82 KWKQPLTVIVTP---VSKLHFRVWSHQT----LKSDVLLGTAALDIYETLKSNNMKLEEV 134
Query: 519 YHLIDSKN--------GRIQIELQW 535
+ G + I L
Sbjct: 135 VVTLQLGGDKEPTETIGDLSICLDG 159
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-29
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVK 319
L V +++A +L D+ G SDPYVK+ L DK +T V + LNP +NE+F V
Sbjct: 42 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 101
Query: 320 DPEYQ--ALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365
E L + VYD+++ HD +G +P+ + E DL
Sbjct: 102 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-05
Identities = 23/182 (12%), Positives = 59/182 (32%), Gaps = 40/182 (21%)
Query: 353 TPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEG 412
+P L ++ + + E+ G++ + Y
Sbjct: 2 SPGISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQ------------------ 43
Query: 413 TPEGGGLLVVILHEAQD---VEGKYHTNPSARILF---RGEEKKTKRIKKNRDPRWEEEF 466
L+V + +A + ++ ++P ++ + ++ +TK +K +P + E+F
Sbjct: 44 -------LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF 96
Query: 467 QFTL-EEPPTDDKLHVEVIS--TSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLID 523
F + L + V S+ + +G + + V E L
Sbjct: 97 TFKVPYSELGGKTLVMAVYDFDRFSK------HDIIGEFKVPMNTVDFGHVTEEWRDLQS 150
Query: 524 SK 525
++
Sbjct: 151 AE 152
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 117 bits (293), Expect = 6e-28
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 249 MDPAKAM---QKPVGILNVKVLRAMKLKKK---DLIGASDPYVKLKLTDDKLPSKKTTVK 302
+DP + + + V VLRA K+ K D++ DPYV+L ++ K+T
Sbjct: 4 IDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF 63
Query: 303 HRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTL 362
+ ++NP WNE F ++ + LE+ + D V + +G + + E +E+
Sbjct: 64 NNDINPVWNETFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPF 122
Query: 363 DLLKNMDPNDTRNE 376
+ + +
Sbjct: 123 IFNQVTEMVLEMSL 136
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 4e-04
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 447 EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINL 506
K+T+ + +P W E F+F L+ + L + ++ + M ETLG +
Sbjct: 56 SRKRTRHFNNDINPVWNETFEFILDPNQE-NVLEITLMDANYVM-----DETLGTATFTV 109
Query: 507 ADVVNNKRINEKYHLIDSKNGRIQIELQWR 536
+ + ++ + +++ L+
Sbjct: 110 SSMKVGEKKEVPFIFNQVTEMVLEMSLEVC 139
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 8e-28
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
+L V V A L D G SDPYVKLKL D +KT +LNPEWNE F
Sbjct: 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90
Query: 318 VKDPEYQA-LELQVYDWEKVGHHDKMGMNVIPLKDITPEEPRE 359
+K+ + L ++++DW+ +D MG + ++
Sbjct: 91 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG 133
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 21/126 (16%)
Query: 417 GGLLVVILHEAQ-----DVEGKYHTNPSARILF-----RGEEKKTKRIKKNRDPRWEEEF 466
+L+V++ +A+ D G ++P ++ ++KTK IK + +P W E F
Sbjct: 30 REVLIVVVRDAKNLVPMDPNGL--SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 87
Query: 467 QFTLEEPPTDDKLHVEVIS--TSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524
+F L+E D +L VE+ +SR + +G + +++ + ++ + L+
Sbjct: 88 RFQLKESDKDRRLSVEIWDWDLTSR------NDFMGSLSFGISE-LQKAGVDGWFKLLSQ 140
Query: 525 KNGRIQ 530
+ G
Sbjct: 141 EEGEYF 146
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 7e-27
Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 22/147 (14%)
Query: 250 DPAKAMQKPVGILNVKVLRAMKLKKKDLIG----------ASDPYVKLKLTDDKLPSKKT 299
+ K G L V++ A+ L+ DPY+ + + D++ +T
Sbjct: 19 SMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVRVGQT 76
Query: 300 TVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPRE 359
+ K + P +NEEF V D LEL V+ +G+ + + +++
Sbjct: 77 STKQKTNKPTYNEEFCANVTDG--GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGAS 134
Query: 360 MTLDLLKNMDPNDTRNEKSRGQVVVEV 386
T + +++P G+V V +
Sbjct: 135 DTFEGWVDLEP--------EGKVFVVI 153
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-05
Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 23/150 (15%)
Query: 402 GPNSVQKAPEGTPEGGGLLVVILHEAQD-------------VEGKYHTNPSARILFRGEE 448
G GT + G L V + EA +G +P +
Sbjct: 13 GLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVR 72
Query: 449 K-KTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLA 507
+T +K P + EEF + + L + V + L + +
Sbjct: 73 VGQTSTKQKTNKPTYNEEFCANVTDG---GHLELAVFHET----PLGYDHFVANCTLQFQ 125
Query: 508 DVVNNKRINEKY-HLID-SKNGRIQIELQW 535
+++ ++ + +D G++ + +
Sbjct: 126 ELLRTTGASDTFEGWVDLEPEGKVFVVITL 155
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 2e-25
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 15/119 (12%)
Query: 255 MQKPVGILNVKVLRAMKLKKKDL-----------IGASDPYVKLKLTDDKLPSKKTTVKH 303
M G+L +K+ A+ LK DPY+ L + D ++ +T K
Sbjct: 1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQ 58
Query: 304 RNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTL 362
+ +P W++EF V + +EL V+ +G+ D + I +++ R
Sbjct: 59 KTNSPAWHDEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED 115
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 8e-05
Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
Query: 447 EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINL 506
+T +K P W +EF + K+ + V + + + + I
Sbjct: 50 RIGQTATKQKTNSPAWHDEFVTDVCNG---RKIELAVFHDA----PIGYDDFVANCTIQF 102
Query: 507 ADVV--NNKRINEKYHLIDSKNGRIQIELQWRAS 538
+++ ++ + L G++ + + S
Sbjct: 103 EELLQNGSRHFEDWIDL--EPEGKVYVIIDLSGS 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 1e-23
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 6/108 (5%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSK-KTTVKHRNLNPEWNEEFGLVV 318
L V L A + G D YV+ + + + +T +K R L+ W E L +
Sbjct: 26 AELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82
Query: 319 KDPEYQA--LELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364
+ E L L + ++ H G + L + +L
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 5/69 (7%)
Query: 420 LVVILHEAQDVEGKYHTNPSARILFRGEEKKTKR----IKKNRDPRWEEEFQFTL-EEPP 474
L V EA + + + K+ WEE L EE
Sbjct: 28 LFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87
Query: 475 TDDKLHVEV 483
L + +
Sbjct: 88 PTATLTLTL 96
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 2e-23
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIG-ASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEF---G 315
V + A L D SDPY+K+ + +K KT V + L+P ++E F G
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 316 LVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITP-EEPREMTLDLLKN 367
+ + AL + +++ D +G +IPL I E M +++
Sbjct: 82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 7e-23
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 260 GILNVKVLRAMKLKKKDL-IGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNE--EF 314
L V V +L D S+PYVK L D + +KT++K +NP ++E +
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82
Query: 315 GLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364
+ + L+ V+ + G + +G I + ++ + L L
Sbjct: 83 EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPL 132
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 14/129 (10%)
Query: 418 GLLVVILHEAQD----VEGKYHTNPSARILF-----RGEEKKTKRIKKNRDPRWEEEFQF 468
LVV + E E K +NP + R ++KT + +P ++E ++
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82
Query: 469 TLEEPPTDDK-LHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNG 527
+ E + L V R G LG I + +K+++ L +
Sbjct: 83 EIPESLLAQRTLQFSVWH-HGRFG---RNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA 138
Query: 528 RIQIELQWR 536
+
Sbjct: 139 ESEGHHHHH 147
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 7e-23
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPS-----------KKTTVKHRNLNP 308
G L + +L+A L +D G SDP+VK+ L + ++T ++LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 309 EWNEEF---GLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365
EWN+ + ++ + LE+ V+D+++ +D +G +I L + + L
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-22
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
+ V +++A LK D+ G SDPYVK+ L ++ KKT K RNLNP +NE F
Sbjct: 16 NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75
Query: 318 VKDPEYQA--LELQVYDWEKVGHHDKMGMNVIPLKDITPE 355
+ + + + + V D +K+ +D +G + K E
Sbjct: 76 IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGE 115
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 3e-22
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 260 GILNVKVLRAMKLK-------KKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNE 312
L V+V+ A L + + S+PYVK+ L D+ SK+T VK + P + E
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85
Query: 313 EFGLVVKDPEYQ--ALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364
+ + E Q L L V D++K H +G +PL ++ + L
Sbjct: 86 RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 2e-21
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
G L V ++R + L D G SDP+VKL L D K KT +K + LNPE+NEEF
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 318 VKDPEYQ--ALELQVYDWEKVGHHDKMGMNVIPL 349
+K + +L++ V+D++ +D +G + +
Sbjct: 97 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 3e-21
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
L V VL+A L K D+ G SDPYVK+ L ++ KKT VK N +NE F
Sbjct: 30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89
Query: 318 VKDPEYQ--ALELQVYDWEKVGHHDKMGMNVIPL 349
+ + ++E V D E+ ++ +G V+
Sbjct: 90 IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA 123
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 3e-21
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEF--- 314
G L + V+ L +D +PYVK L D K +KT + + NP +NE
Sbjct: 20 GTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78
Query: 315 GLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365
G + + L+L V E + + +G +PLKD + L
Sbjct: 79 GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 4e-21
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
G L V +L A LKK D+ G SDPYVK+ L + +L KKTT+K LNP +NE F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 318 VKDPEYQA--LELQVYDWEKVGHHDKMGMNVIPLKDITPE 355
V + Q + + V D++K+G +D +G + E
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 5e-21
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
L V V L G SDPYV++ L D + +KT V + LNP +++ F
Sbjct: 24 NKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS 82
Query: 318 VKDPEYQ--ALELQVYDWEKVGHHDK--MGMNVIPLKDITPEEPREMTLDLLKNMDPN 371
V PE Q L++ V + DK +G ++ L + DL ++ P+
Sbjct: 83 VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSGPS 140
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 418 GLLVVILHEAQD--VEGKYHTNPSARILF-----RGEEKKTKRIKKNRDPRWEEEFQFTL 470
L+V++H ++ + ++P R+ R +KT KK +P +++ F F++
Sbjct: 24 NKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSV 83
Query: 471 EEPPTDDK-LHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLID 523
P + L V V +S L K LG + + LA K + Y L +
Sbjct: 84 SLPEVQRRTLDVAVK--NSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE 135
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 1e-20
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPS--KKTTVKHRNLNPEWNEEF--- 314
L V +L A L ++ +PYVK+ D+ ++T + L P+WN+ F
Sbjct: 21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80
Query: 315 GLVVKDPEYQALELQVYDWEKVGHHDK--MGMNVIPLKDITPEE 356
+ ++ + LE+ ++D +V + +G +I L+ ++
Sbjct: 81 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 124
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-20
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPS--KKTTVKHRNLNPEWNEEF--- 314
L V +L A L ++ +PYVK+ D+ ++T + L P+WN+ F
Sbjct: 18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77
Query: 315 GLVVKDPEYQALELQVYDWEKVGHHDK--MGMNVIPLKDITPEE 356
+ ++ + LE+ ++D +V + +G +I L+ ++
Sbjct: 78 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 121
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 2e-20
Identities = 12/104 (11%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKL---TDDKLPSKKTTVKHRNLNPEWNEEFGL 316
+ +++ L +++ + ++ +T + +NE F +
Sbjct: 43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102
Query: 317 VVKDPEYQ--ALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPR 358
+ P L + V ++ + +G I L ++ R
Sbjct: 103 SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGER 146
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 15/116 (12%)
Query: 418 GLLVVILHEAQDVEGKYHTNPS-----ARILFRGEEK----KTKRIKKNRDPRWEEEFQF 468
+++ + ++ +L E +T+ + + + E F
Sbjct: 43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102
Query: 469 TLEEPPTDDK-LHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEK-YHLI 522
++ P K L V+V +T H +E LG I+LA+V + + + Y+L+
Sbjct: 103 SMSYPALHQKTLRVDVCTTDR----SHLEECLGGAQISLAEVCRSGERSTRWYNLL 154
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 3e-20
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 260 GILNVKVLRAMKLKKKDL-IGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGL 316
G L V+V+RA L +K PYVK+ L ++ + KKT + + L+P + +
Sbjct: 30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 317 VVKDPEYQALELQVY-DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365
P+ + L++ V+ D+ ++ H MG+ I L+++ L
Sbjct: 90 DE-SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLF 138
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 14/114 (12%)
Query: 417 GGLLVVILHEAQDVEGKYHTNPSA------RILF---RGEEKKTKRIKKNRDPRWEEEFQ 467
G L V + A+ + K + + +L +KKT+ +K DP +++
Sbjct: 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88
Query: 468 FTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHL 521
F +E P L V V RM K +G I L ++ + + Y L
Sbjct: 89 F--DESPQGKVLQVIVWGDYGRMD---HKCFMGVAQILLEELDLSSMVIGWYKL 137
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 5e-19
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
+L + ++ L K G DPYVK+ L + +L +KT +P ++E F
Sbjct: 27 RVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85
Query: 318 VKDPEYQ-ALELQVYDWEKVG-HHDKMGMNVIPLKDI 352
V++ + Q L + V++ +G +K +
Sbjct: 86 VQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 418 GLLVVILHEAQD--VEGKYHTNPSARILF-----RGEEKKTKRIKKNRDPRWEEEFQFTL 470
+L++ + E + + +P +I R +KT+ + RDP + E F F +
Sbjct: 27 RVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPV 86
Query: 471 EEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEK-YHLIDSKNGRI 529
+E +L V V +R +G + + ++ + Y+L+ GR
Sbjct: 87 QEEDDQKRLLVTVW---NRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRT 143
Query: 530 Q-IELQWR 536
+ +++ R
Sbjct: 144 KHLKVARR 151
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 74.6 bits (182), Expect = 2e-14
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 250 DPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPE 309
Q+ + L V RA L +D Y+K+ + +T V N NP
Sbjct: 384 QDCCPRQRGLAHLVVSNFRAEHLWGDYTTA-TDAYLKVFFGGQE---FRTGVVWNNNNPR 439
Query: 310 WNEEFGL-VVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLK 350
W ++ V L +QV+D + D +G
Sbjct: 440 WTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH 481
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 7e-08
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 435 HTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEV 483
T+ ++ F G+E +T + N +PRW ++ F T L V+V
Sbjct: 413 ATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQV 461
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 3e-13
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 13/123 (10%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVK 319
+L V V +A K + YV LK+ + K TT+ R P W ++F +
Sbjct: 5 SLLCVGVKKA---KFDGAQEKFNTYVTLKVQN----VKSTTIAVRGSQPSWEQDFMFEIN 57
Query: 320 DPEYQALELQVYDWEKVGHHDKMGMNVIPLKDIT----PEEPREMTLDLLKNMDPNDTRN 375
+ L ++V++ + + +G IPL+ I +TLD M ++
Sbjct: 58 RLD-LGLTVEVWN-KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICG 115
Query: 376 EKS 378
K
Sbjct: 116 TKD 118
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 7e-05
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 418 GLLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDD 477
LL V + +A+ + N L K T + P WE++F F + D
Sbjct: 5 SLLCVGVKKAKFDGAQEKFNTYVT-LKVQNVKSTTIAVRGSQPSWEQDFMFEINRL--DL 61
Query: 478 KLHVEV 483
L VEV
Sbjct: 62 GLTVEV 67
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 6e-11
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVK 319
+L V V +A ++ + YV LK+ + + TT+ R P W ++F +
Sbjct: 14 SLLCVGVKKAKFDGAQEKF---NTYVTLKVQN----VESTTIAVRGSQPSWEQDFMFEIN 66
Query: 320 DPEYQALELQVYDWEKVGHHDKMGMNVIPLKDI 352
+ L ++V++ + + +G IPL+ I
Sbjct: 67 RLD-LGLTVEVWN-KGLIWDTMVGTVWIPLRTI 97
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 8e-09
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 262 LNVKVLRAMKLKKKDLIGAS--DPYVKLKL---TDDKLPSKKTTVKHRNLNPEWNEEFGL 316
L V+++ +L K + S DP V +++ D + + + NP W+ EF
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 317 VVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITP 354
V P+ + V D++ +D +G + IP +
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 55.8 bits (133), Expect = 2e-08
Identities = 27/171 (15%), Positives = 45/171 (26%), Gaps = 14/171 (8%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNL---NPEWNEEFGLVV 318
L + ++ A ++L Y +L L D +TT K R+ W E F
Sbjct: 13 LKLWIIEA-----RELPPKKRYYCELCLDDM--LYARTTSKPRSASGDTVFWGEHFEFNN 65
Query: 319 KDPEYQALELQVYDWEKVGHHDK---MGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRN 375
D +K DK +G+ +P+ + E + +
Sbjct: 66 LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWY-PVTLPTGSGGSG 124
Query: 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHE 426
G KG P + Q E +
Sbjct: 125 GMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTN 175
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 1e-04
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 8/112 (7%)
Query: 420 LVVILHEAQDVEGKYHTNPSARILFRGEE----KKTKRIKKNRDPRWEEEFQFTLEEPPT 475
L + + EA+++ K + R W E F+F P
Sbjct: 13 LKLWIIEARELPPK--KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEF--NNLPA 68
Query: 476 DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNG 527
L + + S + +G + + +A + + Y +
Sbjct: 69 VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS 120
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 9e-06
Identities = 55/346 (15%), Positives = 107/346 (30%), Gaps = 97/346 (28%)
Query: 226 VQGLIKDQVANMYLW-PKALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPY 284
VQ +++ + Y + ++ + P+ + + + ++ ++ K + PY
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPY 137
Query: 285 VKLK--LTDDKLPSKKTTVKHRNLNPEWNEEFGL-----------VVKDPEYQ-ALELQV 330
+KL+ L + + P+K + G+ V + Q ++ ++
Sbjct: 138 LKLRQALLELR-PAKNVLI------------DGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDT------RNEKSRGQVVV 384
+ W + + + +PE EM LL +DPN T N K R +
Sbjct: 185 F-WLNLKNCN------------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 385 EVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGKYHTNP---SAR 441
L + K N LLV+ +V+ N S +
Sbjct: 232 AELRRLLK------SKPYENC-------------LLVL-----LNVQNAKAWNAFNLSCK 267
Query: 442 ILFRGEEKKTKRIKKNRD--------PRWEEEFQFTLEEPPTDD----KLHVEVISTSSR 489
IL T R K+ D + TL L
Sbjct: 268 ILL------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 490 MGLLHPKETLGYIGINLADVVNNKRINE-KYHLIDSKNGRIQIELQ 534
+ +P+ L I ++ D + + K+ D I+ L
Sbjct: 322 VLTTNPR-RLSIIAESIRDGLA--TWDNWKHVNCDKLTTIIESSLN 364
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 85/552 (15%), Positives = 184/552 (33%), Gaps = 147/552 (26%)
Query: 67 DYDRVDWLNKFIETMWPFLDKAICKTVRETVKPIIA----EQIPQYKIDSVEFEALTLGS 122
Y D L+ F + F+D CK V++ K I++ + I K D+V +
Sbjct: 15 QYQYKDILSVFED---AFVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTLRLFWT 70
Query: 123 L--PPTFQGMKVYVTD----DKELIMEPLLKWAGNPNILIAAKAFGLKATVQVVDLQVFA 176
L + ++ +V + + + +M P+ P+++ + + + D QVFA
Sbjct: 71 LLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM--TRMYIEQRDRLYNDNQVFA 127
Query: 177 FPRITLKPLVPTFPCFANIYVSLME-KPH---VDFGIKLFGADAMAIPGLYTY-VQGLIK 231
K V + + +L+E +P + G+ G +A+ +Y VQ +
Sbjct: 128 ------KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 232 DQVANMYLWPKALEVQIMDPAKAMQKPVGILNVKVLRAMKLK-KKDLIGASDPYVKLKLT 290
++ W L + K P +L ++L+ + + + SD +KL
Sbjct: 182 FKI----FW---LNL------KNCNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 291 DDKLPSKKTTVKHRNLNPEWNEEFGLV----VKDPE-YQALELQ-----------VYDWE 334
+ ++ R L E L+ V++ + + A L V D+
Sbjct: 227 IHSIQAEL-----RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 335 KVGH--HDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQ-----VVVEVL 387
H + + + L TP+E + + L L + P D E ++ E +
Sbjct: 282 SAATTTHISLDHHSMTL---TPDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 388 ---------YKPFKGDEIPPDMDG------PNSVQKA-------PEGT--PEGGGLLVVI 423
+K D++ ++ P +K P P L+ +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI---LLSL 394
Query: 424 L------HEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDD 477
+ + V K H ++ + ++ T I L+ ++
Sbjct: 395 IWFDVIKSDVMVVVNKLH---KYSLVEKQPKESTISI---------PSIYLELKVKLENE 442
Query: 478 K-LHVEVISTSSRMGLLHPKETL------GYIGINLADVVNNKRINEKYHLIDSKNG--- 527
LH ++ + + L Y ++ +HL + ++
Sbjct: 443 YALHRSIV-DHYNIPKTFDSDDLIPPYLDQYFYSHIG-----------HHLKNIEHPERM 490
Query: 528 ----RIQIELQW 535
+ ++ ++
Sbjct: 491 TLFRMVFLDFRF 502
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 3/128 (2%)
Query: 230 IKDQVANMYLWPKALEVQIMDPAKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKL 289
IK K + +G L V V+ A +LK G S+PY ++ +
Sbjct: 357 IKAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISM 416
Query: 290 TDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPL 349
S T LNP+WN +KD L L ++D ++ D +G IP+
Sbjct: 417 GSQ---SYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPV 473
Query: 350 KDITPEEP 357
I E+
Sbjct: 474 AKIRTEQE 481
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 100.0 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.86 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.85 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.85 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.83 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.83 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.83 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.83 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.82 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.82 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.81 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.8 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.8 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.79 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.78 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.78 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.77 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.77 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.77 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.77 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.77 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.76 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.76 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.76 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.76 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.75 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.75 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.75 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.75 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.75 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.75 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.75 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.75 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.75 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.74 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.74 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.74 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.74 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.73 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.73 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.73 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.73 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.73 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.73 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.72 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.72 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.72 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.72 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.72 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.72 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.72 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.71 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.71 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.71 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.71 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.7 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.7 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.7 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.7 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.7 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.7 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.7 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.69 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.69 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.68 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.68 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.68 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.68 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.67 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.67 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.64 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.63 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.62 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.61 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.6 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.57 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.57 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.55 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.52 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.51 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.49 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.39 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.37 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.37 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.33 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.24 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.19 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.17 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.14 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.13 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.98 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 98.95 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.94 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.93 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 98.92 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.89 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.86 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 92.2 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 90.42 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 90.36 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 90.24 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 89.02 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 88.02 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 85.46 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 84.82 | |
| 2y3a_A | 1092 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 80.6 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=283.27 Aligned_cols=235 Identities=25% Similarity=0.376 Sum_probs=197.0
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEecC
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDWE 334 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~~ 334 (538)
...|.|+|+|++|++|+.+|..|.+||||++++++.....++|+++++++||.|||+|.|.+... ....|.|+|||+|
T Consensus 16 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d 95 (284)
T 2r83_A 16 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD 95 (284)
T ss_dssp TTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence 46799999999999999999899999999999986554567999999999999999999998643 3579999999999
Q ss_pred CCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCC
Q 046405 335 KVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTP 414 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 414 (538)
.+++|++||++.++|.++..+.....|++|..... ......|+|.+++.|.|.
T Consensus 96 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~----~~~~~~G~i~l~l~~~p~----------------------- 148 (284)
T 2r83_A 96 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK----EEQEKLGDICFSLRYVPT----------------------- 148 (284)
T ss_dssp SSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSS----CCCCCCCEEEEEEEEETT-----------------------
T ss_pred CCCCCceeEEEEEcchhcccCCcceeEEEeecccc----ccccccccEEEEEEecCc-----------------------
Confidence 99999999999999999998877888998854221 123467999999999854
Q ss_pred CCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----eeEEeecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEE
Q 046405 415 EGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVIS 485 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d 485 (538)
.+.|.|.|++|+||+. .+.+||||++++.. .+++|++++++.||+|||.|.|.+..... ...|.|+|||
T Consensus 149 --~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d 226 (284)
T 2r83_A 149 --AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD 226 (284)
T ss_dssp --TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEE
T ss_pred --CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEe
Confidence 6899999999999986 35799999999852 34699999999999999999999975322 3479999999
Q ss_pred ccCCCCCCCCCCccEEEEEecchh----------cc--cceeceEEEcCCC
Q 046405 486 TSSRMGLLHPKETLGYIGINLADV----------VN--NKRINEKYHLIDS 524 (538)
Q Consensus 486 ~~~~~g~~~~d~~lG~~~i~L~~l----------~~--~~~~~~~~~L~~~ 524 (538)
++. ++++++||++.++++.+ +. +....+||+|.+.
T Consensus 227 ~d~----~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 227 YDK----IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp CCS----SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred CCC----CCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 985 57899999999999763 22 2356799999864
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=278.70 Aligned_cols=236 Identities=25% Similarity=0.416 Sum_probs=189.7
Q ss_pred cCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEe
Q 046405 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYD 332 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 332 (538)
.....|.|+|+|++|++|+.+|..|.+||||++++.+.....++|+++++++||.|||+|.|.+... ....|+|+|||
T Consensus 15 y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d 94 (296)
T 1dqv_A 15 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD 94 (296)
T ss_dssp CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred EeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEE
Confidence 3446799999999999999999999999999999954444567999999999999999999998643 24589999999
Q ss_pred cCCCCCCCccEEEEEe-CccCCC-CCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecCCCCCCCCCCCCCccCCC
Q 046405 333 WEKVGHHDKMGMNVIP-LKDITP-EEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAP 410 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~-l~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~ 410 (538)
+|.+++|++||++.++ +.++.. ......|++|.... ......|+|.+++.|.|.
T Consensus 95 ~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~i~vsl~y~~~------------------- 150 (296)
T 1dqv_A 95 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGG-----SEKADLGELNFSLCYLPT------------------- 150 (296)
T ss_dssp CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCS-----SCCSCCCEEEEEEEEETT-------------------
T ss_pred cCCCCCCceEEEEEeccccccccCCccceeeecccccc-----ccccccceEEEEEEeccc-------------------
Confidence 9999999999999996 444443 23445677664321 124567999999999753
Q ss_pred CCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEc--C---eeEEeecccCCCCCcCcceEEEEecCCCC-CCeEEE
Q 046405 411 EGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFR--G---EEKKTKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHV 481 (538)
Q Consensus 411 ~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~--~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v 481 (538)
.|.|.|+|++|+||+. .+.+||||++++. + .++||++++++.||+|||.|.|.+..... ...|.|
T Consensus 151 ------~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i 224 (296)
T 1dqv_A 151 ------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSI 224 (296)
T ss_dssp ------TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCC
T ss_pred ------cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEE
Confidence 6899999999999986 3578999999996 3 45799999999999999999999875322 347999
Q ss_pred EEEEccCCCCCCCCCCccEEEEEecchhcc-------------cceeceEEEcCCC
Q 046405 482 EVISTSSRMGLLHPKETLGYIGINLADVVN-------------NKRINEKYHLIDS 524 (538)
Q Consensus 482 ~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~-------------~~~~~~~~~L~~~ 524 (538)
+|||++. +++|++||++.|+++++.. +....+|++|...
T Consensus 225 ~V~d~d~----~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~ 276 (296)
T 1dqv_A 225 AVVDYDC----IGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE 276 (296)
T ss_dssp EEEECCS----SSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred EEEeCCC----CCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence 9999985 5789999999999987643 2245678887654
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-21 Score=166.80 Aligned_cols=129 Identities=27% Similarity=0.483 Sum_probs=110.2
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC---CCCeEEEEEEec
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP---EYQALELQVYDW 333 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d~ 333 (538)
...|.|+|+|++|++|+..+. |.+||||+++++++. ++|++++++.||+|||+|.|.+..+ ....|.|+|||+
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~ 79 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF 79 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCE---EECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEe---EEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence 467999999999999999998 999999999998654 5999999999999999999999754 368999999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeec
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFK 392 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (538)
|.+++|++||++.+++.++..+.....|+++.+..+.. +....|+|++++.|.|..
T Consensus 80 d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~---~~~~~G~l~l~~~~~p~~ 135 (140)
T 2dmh_A 80 ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEK---GQDTGATIDLVIGYDPPS 135 (140)
T ss_dssp TCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTT---CCEEEEEEEEEEEECCCB
T ss_pred CCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCC---CCCCCCEEEEEEEEECCC
Confidence 99999999999999999999887778888743322221 235679999999999864
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=168.40 Aligned_cols=128 Identities=27% Similarity=0.481 Sum_probs=111.2
Q ss_pred ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecC-CCCCceeeeEEEEEEeCCCCCeEEEEEEe
Q 046405 254 AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNLNPEWNEEFGLVVKDPEYQALELQVYD 332 (538)
Q Consensus 254 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d 332 (538)
....+.|.|+|+|++|++|+..+..|.+||||+++++++. ++|++++ ++.||.|||+|.|.+.+ ....|+|+|||
T Consensus 4 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d 79 (136)
T 1wfj_A 4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD---QKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFD 79 (136)
T ss_dssp CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCE---EECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECC
T ss_pred CCCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCcc---ceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEE
Confidence 3456899999999999999999988999999999998764 4899998 89999999999999987 46899999999
Q ss_pred cCCCCCCCccEEEEEeCccCC-CCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecC
Q 046405 333 WEKVGHHDKMGMNVIPLKDIT-PEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKG 393 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (538)
++.+++|++||++.+++.++. .+.....|++|.+ +++..|+|+++++|.|...
T Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPSGP 133 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEECCS
T ss_pred CCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeec--------CCccCEEEEEEEEEEeCCC
Confidence 999999999999999999994 4444567888752 2578999999999999743
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=167.59 Aligned_cols=130 Identities=32% Similarity=0.537 Sum_probs=103.5
Q ss_pred cCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC---CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEE
Q 046405 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK---LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVY 331 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~ 331 (538)
.....|.|+|+|++|++|+.++..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+... ...|.|+||
T Consensus 15 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~ 93 (153)
T 3b7y_A 15 DEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVF 93 (153)
T ss_dssp CCTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEE
T ss_pred CCCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEE
Confidence 356789999999999999999988999999999997432 2356999999999999999999999764 578999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCc------eEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPR------EMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~------~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
|++.+++|++||++.+++.++..+... ..|++|.... ......|+|+++++|.|
T Consensus 94 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 94 DENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp ECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSS-----TTCCCCSEEEEEEEECC
T ss_pred ECCCCcCCCeeEEEEEEHHHcccCCCccccccccccccccccc-----CCCCcceEEEEEEEEeC
Confidence 999999999999999999999876543 4788875421 12467899999999986
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=160.33 Aligned_cols=120 Identities=23% Similarity=0.399 Sum_probs=103.3
Q ss_pred eeEEEEEEEEecCCCcC---CCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCC
Q 046405 259 VGILNVKVLRAMKLKKK---DLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEK 335 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~ 335 (538)
.|.|+|+|++|++|+.+ +..|.+||||++++++.....++|++++++.||.|||+|.|.+..+....|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 58999999999999984 667899999999998754456799999999999999999999976667899999999998
Q ss_pred CCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 336 VGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
. +|++||++.++|.++..+.....|++|. ....|+|+++++..
T Consensus 82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~----------~~~~g~i~~~le~~ 124 (126)
T 1rlw_A 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEVA 124 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEECC
T ss_pred C-CCceeEEEEEEHHHccCCCcEEEEEEcC----------CCceEEEEEEEEeC
Confidence 7 4999999999999999888888999873 24567777777543
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-20 Score=162.13 Aligned_cols=126 Identities=34% Similarity=0.465 Sum_probs=107.7
Q ss_pred ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEec
Q 046405 254 AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDW 333 (538)
Q Consensus 254 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 333 (538)
....+.|.|+|+|++|++|+.++..|.+||||+++++++. ++|++++++.||.|||+|.|.+.+. .+.|.++|||+
T Consensus 7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~ 82 (133)
T 2ep6_A 7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDE 82 (133)
T ss_dssp CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEE
T ss_pred cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEE---EEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEEC
Confidence 3456789999999999999999989999999999998754 4999999999999999999999765 57899999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
+..++|++||++.+++.++..+. ..|++|.... ..+...|+|+++++|..
T Consensus 83 d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~-----~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 83 DGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKD-----LEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp ETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSC-----TTSCCSSEEEEEEEEEE
T ss_pred CCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCC-----CCCccceEEEEEEEEEe
Confidence 99889999999999999997654 4677764321 12467899999998863
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=167.09 Aligned_cols=120 Identities=24% Similarity=0.334 Sum_probs=102.4
Q ss_pred ccCCceeEEEEEEEEecCCCcCCC----------CCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCC
Q 046405 254 AMQKPVGILNVKVLRAMKLKKKDL----------IGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEY 323 (538)
Q Consensus 254 ~~~~~~G~L~V~v~~A~~L~~~d~----------~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~ 323 (538)
......|.|+|+|++|++|+++|. .|.+||||+++++++. ..+|+++++|+||.|||+|.|.+.+ .
T Consensus 23 ~~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~--~~kT~v~~ktlnP~WNE~F~f~v~~--~ 98 (157)
T 2fk9_A 23 GTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVR--VGQTSTKQKTNKPTYNEEFCANVTD--G 98 (157)
T ss_dssp -CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEE--EEECCCCSSCSSCEEEEEEEEEEEE--E
T ss_pred hhccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEe--eEEeeecCCCCCCccCcEEEEEcCC--C
Confidence 344678999999999999998873 2679999999998654 2589999999999999999999975 4
Q ss_pred CeEEEEEEecCCCCCCCccEEEEEeCccCCCC----CCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 324 QALELQVYDWEKVGHHDKMGMNVIPLKDITPE----EPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 324 ~~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
+.|.|+|||+|.+++|++||++.++++++..+ ...+.|++|. ..|+|++.++|.
T Consensus 99 ~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~------------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 99 GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE------------PEGKVFVVITLT 156 (157)
T ss_dssp CEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB------------SSCEEEEEEEEC
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC------------CCcEEEEEEEEE
Confidence 68999999999999999999999999999854 5678899872 279999999874
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-20 Score=166.57 Aligned_cols=130 Identities=31% Similarity=0.527 Sum_probs=101.2
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCC---CceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEe
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL---PSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYD 332 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d 332 (538)
....|.|+|+|++|++|+.++..|.+||||++++++... ..++|++++++.||.|||+|.|.+... ...|.|+|||
T Consensus 4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d 82 (176)
T 3m7f_B 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFD 82 (176)
T ss_dssp CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEE
T ss_pred CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEE
Confidence 346899999999999999999999999999999975332 346999999999999999999999754 5789999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCc-e-----EEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPR-E-----MTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~-~-----~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
++.+++|++||++.++|.++..+... + .|++|..... .++..|+|++++.|.|.
T Consensus 83 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~-----~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 83 ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSH-----KSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp CC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSST-----TCCCCSEEEEEEEECC-
T ss_pred CCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCC-----CCccCEEEEEEEEEEeC
Confidence 99999999999999999999876443 1 6787754221 24578999999999997
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=160.12 Aligned_cols=123 Identities=24% Similarity=0.419 Sum_probs=104.1
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCC
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEK 335 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~ 335 (538)
....|.|+|+|++|++|+.+|..|.+||||+++++++. ++|++++++.||.|||+|.|.+..+ .+.|.++|||++.
T Consensus 13 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~ 88 (148)
T 3kwu_A 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTK---KRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDD 88 (148)
T ss_dssp --CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCC
T ss_pred cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEE---EECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCC
Confidence 34579999999999999999999999999999997644 5999999999999999999999776 5789999999997
Q ss_pred C-----------CCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 336 V-----------GHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 336 ~-----------~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
. ++|++||++.+++.++. .....|++|.... ......|+|+++++|.
T Consensus 89 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 89 DIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRT-----DKSAVSGAIRLHISVE 146 (148)
T ss_dssp SHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSS-----TTCCCCCEEEEEEEEE
T ss_pred CccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCC-----CCCCCceEEEEEEEEE
Confidence 5 78999999999999993 3556788875421 1245789999999985
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-20 Score=161.18 Aligned_cols=118 Identities=25% Similarity=0.392 Sum_probs=101.3
Q ss_pred ceeEEEEEEEEecCCCcCCCCCC-----------CCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeE
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGA-----------SDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQAL 326 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~-----------~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L 326 (538)
..|.|+|+|++|++|+.+|..++ +||||++++++.. ..+|+++.+|.||.|||+|.|.+.+. +.|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~--~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L 79 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSR--IGQTATKQKTNSPAWHDEFVTDVCNG--RKI 79 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEE--EEECCCCSSCSSCEEEEEEEEEEEEE--CEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeE--eeeeeEECCCcCCccCCEEEEEecCC--CEE
Confidence 46999999999999998875444 9999999997643 35899999999999999999999765 789
Q ss_pred EEEEEecCCCCCCCccEEEEEeCccCCCCCC--ceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 327 ELQVYDWEKVGHHDKMGMNVIPLKDITPEEP--REMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 327 ~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
.|+|||+|.+++|++||++.+++.++..+.. .+.|++| ...|+|+++++|.+.
T Consensus 80 ~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L------------~~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 80 ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------EPEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------BSSCEEEEEEEEEEE
T ss_pred EEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc------------CCCeEEEEEEEEEec
Confidence 9999999999999999999999999987542 3678875 237999999999874
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=160.09 Aligned_cols=113 Identities=15% Similarity=0.237 Sum_probs=99.7
Q ss_pred CCceEEEEEEeeeccCCCC-------------CCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEE
Q 046405 415 EGGGLLVVILHEAQDVEGK-------------YHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLH 480 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~~-------------~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~ 480 (538)
...|.|+|+|.+|+||+.. +.+||||++++++++ .||+++++|.||+|||.|+|.+.+. ..|.
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~---~~L~ 102 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG---GHLE 102 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC---CEEE
Confidence 4579999999999999853 358999999998876 5999999999999999999999753 6899
Q ss_pred EEEEEccCCCCCCCCCCccEEEEEecchhccc----ceeceEEEcCCCCCeEEEEEEEEE
Q 046405 481 VEVISTSSRMGLLHPKETLGYIGINLADVVNN----KRINEKYHLIDSKNGRIQIELQWR 536 (538)
Q Consensus 481 v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~----~~~~~~~~L~~~~~G~i~l~~~wk 536 (538)
|+|||++. +++|++||++.|+|.++..+ ...+.||+|.. +|+|+|+++|.
T Consensus 103 ~~V~D~d~----~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--~G~i~l~l~~~ 156 (157)
T 2fk9_A 103 LAVFHETP----LGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVITLT 156 (157)
T ss_dssp EEEEECCS----SSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--SCEEEEEEEEC
T ss_pred EEEEECCC----CCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--CcEEEEEEEEE
Confidence 99999875 67899999999999999865 56799999974 89999999985
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-19 Score=154.30 Aligned_cols=120 Identities=23% Similarity=0.473 Sum_probs=104.6
Q ss_pred CCceEEEEEEeeeccCCCC--CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCC--CCCeEEEEEEEccCCC
Q 046405 415 EGGGLLVVILHEAQDVEGK--YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPP--TDDKLHVEVISTSSRM 490 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~ 490 (538)
...|.|+|+|++|+||+.. +.+||||++++++++++|++++++.||+|||.|+|.+.... ....|.|+|||++.
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~-- 81 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET-- 81 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC--
T ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC--
Confidence 3578999999999999863 57999999999999999999999999999999999997532 35789999999985
Q ss_pred CCCCCCCccEEEEEecchhcccceeceEEE---cCCCC----CeEEEEEEEEEeC
Q 046405 491 GLLHPKETLGYIGINLADVVNNKRINEKYH---LIDSK----NGRIQIELQWRAS 538 (538)
Q Consensus 491 g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~---L~~~~----~G~i~l~~~wkp~ 538 (538)
+++|++||++.++|.++..+...+.||+ |.+.. .|+|+++++|.|+
T Consensus 82 --~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 82 --IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp --SSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred --CCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 5688999999999999988777788988 65542 4999999999984
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-19 Score=152.38 Aligned_cols=125 Identities=25% Similarity=0.438 Sum_probs=101.1
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCC
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVG 337 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~ 337 (538)
....|+|+|++|++|+.+|..|.+||||++++++.. ..++|+++++|+||.|||+|.|.+... +.|.|+|||++.++
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~ 79 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG-QCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIH 79 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTC-CEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTT
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCC-ceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCC
Confidence 457899999999999999999999999999997542 457999999999999999999999775 35999999999887
Q ss_pred C---CCccEEEEEeCccCC-CCCCceEEEeccccCCCCCCCCCccccEEEEEEEE
Q 046405 338 H---HDKMGMNVIPLKDIT-PEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLY 388 (538)
Q Consensus 338 ~---d~~lG~~~i~l~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~ 388 (538)
+ |++||++.+++.++. .......+++|... .+. ......|+|++++++
T Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~-~~~--~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 80 KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL-NPS--DTDAVRGQIVVSLQT 131 (132)
T ss_dssp SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCS-STT--CCCCCCSEEEEEEEE
T ss_pred CCCCCCceEEEEEeHHHhhcccccCcEEEeeeec-CCC--CCCceeEEEEEEEEc
Confidence 6 899999999999883 22333466776542 111 124668999999875
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-19 Score=151.16 Aligned_cols=115 Identities=16% Similarity=0.350 Sum_probs=101.8
Q ss_pred ceEEEEEEeeeccCCCC------CCCCCeEEEEEcC---eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEcc
Q 046405 417 GGLLVVILHEAQDVEGK------YHTNPSARILFRG---EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTS 487 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~------~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~ 487 (538)
.|.|+|+|++|+||+.. +.+||||++++++ ..++|++++++.||+|||.|.|.+... ....|.|+|||++
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~d 80 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCC-CCCEEEEEEEECC
Confidence 68999999999999972 6899999999986 678999999999999999999999653 5678999999998
Q ss_pred CCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEEEEEEEEEe
Q 046405 488 SRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRA 537 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~wkp 537 (538)
. + +|++||++.++|+++..+.....||+|.+.+.|.|+++++.-|
T Consensus 81 ~----~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~~~ 125 (126)
T 1rlw_A 81 Y----V-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVAS 125 (126)
T ss_dssp S----S-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCC
T ss_pred C----C-CCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEeCC
Confidence 5 3 5889999999999998887889999999877889998888665
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=151.07 Aligned_cols=118 Identities=22% Similarity=0.403 Sum_probs=103.2
Q ss_pred CCceEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeeccc-CCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCC
Q 046405 415 EGGGLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIK-KNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRM 490 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~ 490 (538)
...|.|+|+|++|++|+.. +.+||||++++++++++|++++ ++.||+|||.|+|.+.+ ....|.|+|||++.
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~l~~~V~d~~~-- 82 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDV-- 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSS--
T ss_pred CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC--CCCEEEEEEEECCC--
Confidence 3589999999999999873 5799999999999999999998 89999999999999986 45789999999985
Q ss_pred CCCCCCCccEEEEEecchhcc-cceeceEEEcCCC--CCeEEEEEEEEEeC
Q 046405 491 GLLHPKETLGYIGINLADVVN-NKRINEKYHLIDS--KNGRIQIELQWRAS 538 (538)
Q Consensus 491 g~~~~d~~lG~~~i~L~~l~~-~~~~~~~~~L~~~--~~G~i~l~~~wkp~ 538 (538)
+++|++||++.++|.++.. ......||+|... ..|+|+++++|.|.
T Consensus 83 --~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 83 --GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS 131 (136)
T ss_dssp --CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred --CCCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeC
Confidence 5789999999999999965 4446799999632 36999999999984
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=158.65 Aligned_cols=126 Identities=17% Similarity=0.279 Sum_probs=103.3
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCC
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKV 336 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~ 336 (538)
...+.|+|+|++|++|+..+..+.+||||++++++ ..++|+++++|+||+|||+|.|.+. + .+.|.|+|||+|.+
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~---~~~kT~v~~~tlnP~Wne~f~f~v~-~-~~~L~~~V~D~d~~ 107 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNTNSPKWKQPLTVIVT-P-VSKLHFRVWSHQTL 107 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT---EEEECCCCSSCSSCEEEEEEEEEEC-T-TCEEEEEEEECCSS
T ss_pred CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECC---EEeEccccCCCCCCeECCEEEEEeC-C-CCEEEEEEEECCCC
Confidence 45789999999999999444455699999999987 3469999999999999999999984 3 78999999999999
Q ss_pred CCCCccEEEEEeCccCCCCCC-----ceEEEeccccCCCCCCCCCccccEEEEEEEEEeec
Q 046405 337 GHHDKMGMNVIPLKDITPEEP-----REMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFK 392 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (538)
++|++||++.+++.++..+.. ...|++|.... ......|+|.+.+.|.+..
T Consensus 108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~-----~~~~~~G~L~v~l~~l~~~ 163 (173)
T 2nq3_A 108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK-----EPTETIGDLSICLDGLQLE 163 (173)
T ss_dssp SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESS-----CTTSEEEEEEEEEESEECC
T ss_pred CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCC-----CCCcccEEEEEEEeeeecc
Confidence 999999999999999874321 25688775531 1256789999999999873
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=149.34 Aligned_cols=108 Identities=25% Similarity=0.300 Sum_probs=94.3
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEE-EeCC--CCCeEEEEEE
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV-VKDP--EYQALELQVY 331 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~-v~~~--~~~~L~v~v~ 331 (538)
...|.|+|+|++|+||+. +..|.+||||++++.+. ...+++|+++++|.||+|||+|.|. +... ....|.|+||
T Consensus 17 ~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~ 95 (134)
T 2b3r_A 17 YRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVL 95 (134)
T ss_dssp EETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred ecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence 356899999999999997 77889999999999443 3456799999999999999999999 7532 4579999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
|++.+++|++||++.++|.++..++....|++|.
T Consensus 96 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 129 (134)
T 2b3r_A 96 SAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129 (134)
T ss_dssp ECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECB
T ss_pred ECCCCCCCcEEEEEEEEhhhccCCCCcceeEECC
Confidence 9999999999999999999999888888999884
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=153.58 Aligned_cols=110 Identities=32% Similarity=0.447 Sum_probs=97.3
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEec
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDW 333 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~ 333 (538)
....+.|+|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 38 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~ 117 (152)
T 1rsy_A 38 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDF 117 (152)
T ss_dssp ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEEC
T ss_pred eCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEEC
Confidence 346789999999999999999889999999999975444567999999999999999999988643 357899999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+.+++|++||++.+++.++..+.....|++|.
T Consensus 118 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 149 (152)
T 1rsy_A 118 DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149 (152)
T ss_dssp CSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred CCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence 99999999999999999998887888999874
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=152.45 Aligned_cols=111 Identities=35% Similarity=0.508 Sum_probs=97.4
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeC---CCCCeEEEEEEe
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD---PEYQALELQVYD 332 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~d 332 (538)
....+.|+|+|++|++|+.++..|.+||||++++.+.....++|++++++.||.|||+|.|.+.. .....|.|+|||
T Consensus 22 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d 101 (141)
T 2d8k_A 22 NFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLD 101 (141)
T ss_dssp CSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEE
T ss_pred eCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEE
Confidence 34678999999999999999989999999999997544456799999999999999999998532 235789999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
++.+++|++||++.+++.++..+.....|++|.+
T Consensus 102 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 135 (141)
T 2d8k_A 102 YDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135 (141)
T ss_dssp CCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred CCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence 9999999999999999999998888889999865
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=152.62 Aligned_cols=110 Identities=32% Similarity=0.447 Sum_probs=97.8
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEec
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDW 333 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~ 333 (538)
....+.|+|+|++|++|+..+..+.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 30 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~ 109 (143)
T 3f04_A 30 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDF 109 (143)
T ss_dssp ETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEEC
T ss_pred eCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeC
Confidence 346799999999999999999889999999999965544567999999999999999999998633 357899999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+.+++|++||++.++|.++..+.....|++|.
T Consensus 110 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 110 DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred CCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 99999999999999999999888888999874
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-19 Score=158.23 Aligned_cols=110 Identities=13% Similarity=0.117 Sum_probs=94.5
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcC---CCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTD---DKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~---~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v 330 (538)
....+.|+|+|++|+||+.+|..|.+||||++++.+ ....++||+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 39 ~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V 118 (155)
T 2z0u_A 39 DEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDV 118 (155)
T ss_dssp ETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEE
T ss_pred cCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEE
Confidence 345789999999999999999999999999999976 222357999999999999999999998643 256899999
Q ss_pred EecCCCCCCCccEEEEEeCccCCC-CCCceEEEecc
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITP-EEPREMTLDLL 365 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~l~ 365 (538)
||+|.+++|++||++.++|+++.. +.....|++|.
T Consensus 119 ~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 119 CTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred EECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 999999999999999999999964 55677888763
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-18 Score=147.09 Aligned_cols=121 Identities=15% Similarity=0.067 Sum_probs=102.2
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCCCCCCCeEEEEEcC----eeEEe
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGKYHTNPSARILFRG----EEKKT 451 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~----~~~kT 451 (538)
....|+|++++.|.+. .+.|+|+|++|++....+.+||||++++.. ..++|
T Consensus 9 ~~~~G~l~~sl~y~~~-------------------------~~~L~V~v~~a~~~d~~g~sDPyv~v~l~~~~~~~~~kT 63 (138)
T 1wfm_A 9 WNQAPKLHYCLDYDCQ-------------------------KAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQT 63 (138)
T ss_dssp CSSCCEEEEEEEEETT-------------------------TTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEEEEEEeCC-------------------------CCEEEEEEEEEEcCCCCCCcceEEEEEEEcCCCcccEec
Confidence 4568999999999854 789999999999766567899999999942 24699
Q ss_pred ecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC
Q 046405 452 KRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 525 (538)
++++++.||+|||.|.|.+..... ...|.|+|||++. +++|++||++.++|.++.......+||+|....
T Consensus 64 ~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~----~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~ 134 (138)
T 1wfm_A 64 ALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR----FSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134 (138)
T ss_dssp CCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS----SCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred ccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC----CCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence 999999999999999999875322 4589999999985 678999999999999987556678999998753
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=150.67 Aligned_cols=122 Identities=24% Similarity=0.454 Sum_probs=102.3
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEE-----cCe
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILF-----RGE 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~-----~~~ 447 (538)
+...|+|.+++.|.+. .+.|+|+|++|+||+.. +.+||||++++ +..
T Consensus 4 ~~~~G~i~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 58 (141)
T 1v27_A 4 GSSGGQLSIKLWFDKV-------------------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKN 58 (141)
T ss_dssp CCCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSS
T ss_pred CCcccEEEEEEEEeCC-------------------------CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCc
Confidence 5678999999999864 68999999999999873 57899999999 345
Q ss_pred eEEeecccCCCCCcCcceEEEEecCCC--CCCeEEEEEEEccCCCCCCCC--CCccEEEEEecchhcccceeceEEEcCC
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLEEPP--TDDKLHVEVISTSSRMGLLHP--KETLGYIGINLADVVNNKRINEKYHLID 523 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~~l~v~V~d~~~~~g~~~~--d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 523 (538)
.++|++++++.||+|||.|.|.+.... ....|.|+|||++. +++ |++||++.++|.++..+. ..+||+|.+
T Consensus 59 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~----~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~ 133 (141)
T 1v27_A 59 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR----VREEESEFLGEILIELETALLDD-EPHWYKLQT 133 (141)
T ss_dssp CCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCS----SSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBC
T ss_pred ceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCC----CcCCCCceEEEEEEEccccCCCC-CCceEECcc
Confidence 679999999999999999999953211 24689999999985 454 899999999999987654 789999987
Q ss_pred CCCe
Q 046405 524 SKNG 527 (538)
Q Consensus 524 ~~~G 527 (538)
...|
T Consensus 134 ~~~g 137 (141)
T 1v27_A 134 HDSG 137 (141)
T ss_dssp CSSC
T ss_pred cccC
Confidence 6554
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=153.01 Aligned_cols=123 Identities=21% Similarity=0.350 Sum_probs=101.9
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC--CCCCCeEEEEEc-----Cee
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK--YHTNPSARILFR-----GEE 448 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~--~~~dpyv~v~~~-----~~~ 448 (538)
....|++.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++. ..+
T Consensus 10 ~~~~G~~~lsL~y~~~-------------------------~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~ 64 (153)
T 3fbk_A 10 HKVQGAGQLRLSIDAQ-------------------------DRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRH 64 (153)
T ss_dssp ---CCCCEEEEEEEES-------------------------SSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTC
T ss_pred cCCCCEEEEEEEEECC-------------------------CCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccE
Confidence 6778999999999976 89999999999999873 679999999994 345
Q ss_pred EEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCC-CCccEEEEEecchhcc-cceeceEEEcCCCCC
Q 046405 449 KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHP-KETLGYIGINLADVVN-NKRINEKYHLIDSKN 526 (538)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~-d~~lG~~~i~L~~l~~-~~~~~~~~~L~~~~~ 526 (538)
++|++++++.||+|||.|.|.+........|.|+|||++. +++ |++||++.++|.++.. +....+||+|.+...
T Consensus 65 ~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~----~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~ 140 (153)
T 3fbk_A 65 QKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRAS----QSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHL 140 (153)
T ss_dssp EECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCS----SGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTG
T ss_pred EeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCC----CCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhh
Confidence 7999999999999999999999543344679999999985 455 8999999999999985 566789999987654
Q ss_pred e
Q 046405 527 G 527 (538)
Q Consensus 527 G 527 (538)
|
T Consensus 141 g 141 (153)
T 3fbk_A 141 G 141 (153)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=9.1e-18 Score=149.57 Aligned_cols=118 Identities=20% Similarity=0.370 Sum_probs=98.5
Q ss_pred CCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcC------eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEE
Q 046405 414 PEGGGLLVVILHEAQDVEGK---YHTNPSARILFRG------EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVI 484 (538)
Q Consensus 414 ~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~------~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~ 484 (538)
....+.|+|+|++|+||+.. +.+||||++++++ ..++|++++++.||+|||.|.|.+... ...|.|+||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~l~~~V~ 93 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ--QHRLLFEVF 93 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT--TCEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC--CCEEEEEEE
Confidence 34689999999999999863 5789999999974 456999999999999999999999763 478999999
Q ss_pred EccCCCCCCCCCCccEEEEEecchhccccee------ceEEEcCCC-----CCeEEEEEEEEEe
Q 046405 485 STSSRMGLLHPKETLGYIGINLADVVNNKRI------NEKYHLIDS-----KNGRIQIELQWRA 537 (538)
Q Consensus 485 d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~------~~~~~L~~~-----~~G~i~l~~~wkp 537 (538)
|++. +++|++||++.++|.++...... .+||+|... ..|+|+++++|.|
T Consensus 94 d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 94 DENR----LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp ECCS----SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred ECCC----CcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 9985 57899999999999999875431 599999653 3699999999987
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=146.45 Aligned_cols=110 Identities=25% Similarity=0.395 Sum_probs=93.3
Q ss_pred CceeEEEEEEEEecCCCcCCCC-CCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEE-EeCC--CCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLI-GASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLV-VKDP--EYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~-v~~~--~~~~L~v~v~d 332 (538)
.+.+.|.|+|++|++|+.++.. |.+||||++++.+.....++|++++++.||+|||+|.|. +... ....|.|+|||
T Consensus 19 ~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d 98 (138)
T 1ugk_A 19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS 98 (138)
T ss_dssp GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEE
Confidence 3578999999999999999985 899999999997644456799999999999999999996 5432 24689999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCc-eEEEeccc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPR-EMTLDLLK 366 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~-~~~~~l~~ 366 (538)
+|.+++|++||++.++|.++..+... ..|++|.+
T Consensus 99 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 99 FDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp ECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred CCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 99999999999999999999876544 45677644
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-18 Score=147.84 Aligned_cols=121 Identities=22% Similarity=0.272 Sum_probs=102.6
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEc---CeeE
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFR---GEEK 449 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~ 449 (538)
....|+|++++.|.+. .+.|+|+|++|+||+.. +.+||||++++. ...+
T Consensus 9 ~~~~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 63 (141)
T 2d8k_A 9 RENLGRIQFSVGYNFQ-------------------------ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKL 63 (141)
T ss_dssp CCCCCEEEEEEEECSS-------------------------SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEE
T ss_pred CceeeEEEEEEEEeCC-------------------------CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccE
Confidence 4568999999999864 78999999999999873 579999999995 3567
Q ss_pred EeecccCCCCCcCcceEEEEecCC--CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEP--PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 525 (538)
+|++++++.||+|||.|.|.+... .....|.|+|||++. +++|++||++.++|.++..+.....||+|...+
T Consensus 64 kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 137 (141)
T 2d8k_A 64 ETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR----FSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137 (141)
T ss_dssp ECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS----SSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred eCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC----CCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence 999999999999999999986321 124689999999985 568999999999999998877778999998653
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-18 Score=146.80 Aligned_cols=113 Identities=16% Similarity=0.308 Sum_probs=98.7
Q ss_pred CceEEEEEEeeeccCCCC---CC-----------CCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEE
Q 046405 416 GGGLLVVILHEAQDVEGK---YH-----------TNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLH 480 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~---~~-----------~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~ 480 (538)
..|.|+|+|++|+||+.. +. +||||++++++.. .+|+++++|.||+|||.|+|.+.+. ..|.
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~---~~L~ 80 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIE 80 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC---CEEE
Confidence 479999999999999863 22 8999999998766 5999999999999999999999763 7899
Q ss_pred EEEEEccCCCCCCCCCCccEEEEEecchhcccc--eeceEEEcCCCCCeEEEEEEEEEe
Q 046405 481 VEVISTSSRMGLLHPKETLGYIGINLADVVNNK--RINEKYHLIDSKNGRIQIELQWRA 537 (538)
Q Consensus 481 v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~~~G~i~l~~~wkp 537 (538)
++|||++. +++|++||++.++|+++..+. ..+.|++|.. .|+|+|+++|.+
T Consensus 81 ~~V~d~d~----~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~i~l~l~~~~ 133 (136)
T 1gmi_A 81 LAVFHDAP----IGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSG 133 (136)
T ss_dssp EEEEECCS----SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEE
T ss_pred EEEEeCCC----CCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--CeEEEEEEEEEe
Confidence 99999985 578999999999999998753 4589999974 899999999986
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-18 Score=151.54 Aligned_cols=120 Identities=17% Similarity=0.245 Sum_probs=102.5
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEc---CeeE
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFR---GEEK 449 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~ 449 (538)
....|+|++++.|.+. .+.|+|+|++|+||+.. +.+||||++++. .+.+
T Consensus 25 ~~~~G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 79 (152)
T 1rsy_A 25 EEKLGKLQYSLDYDFQ-------------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF 79 (152)
T ss_dssp -CCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCE
T ss_pred CCCceEEEEEEEEeCC-------------------------CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceE
Confidence 4567999999999864 78999999999999873 578999999994 4567
Q ss_pred EeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
+|++++++.||+|||.|.|.+.... ....|.|+|||++. +++|++||++.++|.++..+....+||+|.+.
T Consensus 80 kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 151 (152)
T 1rsy_A 80 ETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151 (152)
T ss_dssp ECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS----SSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred eccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC----CCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence 9999999999999999999886321 24689999999985 57899999999999999877778999999864
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.7e-18 Score=146.31 Aligned_cols=115 Identities=23% Similarity=0.401 Sum_probs=100.7
Q ss_pred CCceEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCC
Q 046405 415 EGGGLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMG 491 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g 491 (538)
...|.|+|+|++|++|+.. +.+||||++++++++++|++++++.||+|||.|.|.+.+. ...|.++|||++.
T Consensus 10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~--~~~l~i~V~d~d~--- 84 (133)
T 2ep6_A 10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDG--- 84 (133)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEET---
T ss_pred CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC--CCEEEEEEEECCC---
Confidence 3589999999999999863 5799999999999999999999999999999999999863 4789999999985
Q ss_pred CCCCCCccEEEEEecchhcccceeceEEEcCCC-----CCeEEEEEEEEEe
Q 046405 492 LLHPKETLGYIGINLADVVNNKRINEKYHLIDS-----KNGRIQIELQWRA 537 (538)
Q Consensus 492 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~wkp 537 (538)
+++|++||++.++|.++..+. .+||+|.+. ..|+|+++++|-.
T Consensus 85 -~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 85 -DKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp -TEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred -CCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEEEe
Confidence 567899999999999987643 689999753 4699999999864
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-18 Score=150.87 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=103.1
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC----CCCCCCeEEEEEc-----C
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG----KYHTNPSARILFR-----G 446 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~----~~~~dpyv~v~~~-----~ 446 (538)
...+|+|.+++.|.+. .+.|.|+|++|+||+. .+.+||||++++. .
T Consensus 6 ~~~~G~l~~sl~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~ 60 (148)
T 3fdw_A 6 IFVTGRIAFSLKYEQQ-------------------------TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQ 60 (148)
T ss_dssp CCCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGG
T ss_pred CccceEEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCccc
Confidence 4578999999999864 7899999999999985 3579999999996 3
Q ss_pred eeEEeecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 447 EEKKTKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 447 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
.+++|++++++.||+|||.|.|.+..... ...|.|+|||++. +++|++||++.++|.++..+....+||+|.+.
T Consensus 61 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 135 (148)
T 3fdw_A 61 GKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGR----FGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135 (148)
T ss_dssp GEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECG----GGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred CccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCC----CcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence 46799999999999999999999875322 3479999999985 56899999999999999877677899999865
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-18 Score=146.22 Aligned_cols=115 Identities=23% Similarity=0.442 Sum_probs=94.8
Q ss_pred cccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEE-----cCeeE
Q 046405 378 SRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILF-----RGEEK 449 (538)
Q Consensus 378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~-----~~~~~ 449 (538)
..|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++ +..++
T Consensus 3 ~~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~ 57 (129)
T 2bwq_A 3 LSGQLSIKLWFDKV-------------------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKR 57 (129)
T ss_dssp CCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEE
T ss_pred eeEEEEEEEEEccC-------------------------CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcce
Confidence 47999999999864 78999999999999873 56899999999 45678
Q ss_pred EeecccCCCCCcCcceEEEEecCC--CCCCeEEEEEEEccCCCCCCCC--CCccEEEEEecchhcccceeceEEEcC
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEP--PTDDKLHVEVISTSSRMGLLHP--KETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~~~~g~~~~--d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
+|++++++.||+|||.|.|.+... .....|.|+|||++. +++ |++||++.++|.++..+. ..+||+|+
T Consensus 58 kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~----~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq 129 (129)
T 2bwq_A 58 RTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR----VREEESEFLGEILIELETALLDD-EPHWYKLQ 129 (129)
T ss_dssp ECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-----------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred ecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCc----CcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence 999999999999999999996321 124689999999985 455 899999999999988755 78999985
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=145.99 Aligned_cols=118 Identities=21% Similarity=0.348 Sum_probs=99.4
Q ss_pred CCceEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCC--
Q 046405 415 EGGGLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSR-- 489 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~-- 489 (538)
...|.|+|+|++|++|+.. +.+||||++++++..++|++++++.||.|||.|.|.+... .+.|.++|||++..
T Consensus 14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~d~d~~~~ 91 (148)
T 3kwu_A 14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS--SDRIKVRVLDEDDDIK 91 (148)
T ss_dssp -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST--TCEEEEEEEECCCSHH
T ss_pred ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC--CCEEEEEEEECCCCcc
Confidence 3579999999999999873 5899999999999999999999999999999999999864 47899999999851
Q ss_pred -----CCCCCCCCccEEEEEecchhcccceeceEEEcCCC-----CCeEEEEEEEEE
Q 046405 490 -----MGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS-----KNGRIQIELQWR 536 (538)
Q Consensus 490 -----~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~wk 536 (538)
....++|++||++.++|+++ .....+||+|... ..|+|+|++++.
T Consensus 92 ~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 92 SRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred ccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 00015799999999999998 3456899999843 359999999885
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-18 Score=149.53 Aligned_cols=120 Identities=23% Similarity=0.271 Sum_probs=101.8
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC----------CCCCCeEEEEEc
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK----------YHTNPSARILFR 445 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----------~~~dpyv~v~~~ 445 (538)
....|+|++++.|.|. .+.|.|+|++|+||+.. +.+||||++++.
T Consensus 9 ~~~~G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~ 63 (147)
T 2enp_A 9 KYQLGMLHFSTQYDLL-------------------------HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLL 63 (147)
T ss_dssp CCCCCEEEEEEEEETT-------------------------TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEE
T ss_pred CCcceEEEEEEEEcCC-------------------------CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEE
Confidence 5678999999999864 78999999999999863 379999999996
Q ss_pred C---eeEEeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEc
Q 046405 446 G---EEKKTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHL 521 (538)
Q Consensus 446 ~---~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L 521 (538)
. .+++|++++++.||+|||.|.|.+.... ....|.|+|||++. +++|++||++.++|.++........||+|
T Consensus 64 ~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~w~~L 139 (147)
T 2enp_A 64 PDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDK----FSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139 (147)
T ss_dssp TCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCST----TCCSCCCEEEEEETTTSCTTTCCCEEECC
T ss_pred eCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCC----CcCCcEEEEEEEechhcCCCCCccEEEEe
Confidence 3 5679999999999999999999986421 13589999999985 57889999999999999876666788898
Q ss_pred CCC
Q 046405 522 IDS 524 (538)
Q Consensus 522 ~~~ 524 (538)
...
T Consensus 140 ~~~ 142 (147)
T 2enp_A 140 IPS 142 (147)
T ss_dssp BCC
T ss_pred ecC
Confidence 754
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-18 Score=152.15 Aligned_cols=122 Identities=20% Similarity=0.453 Sum_probs=102.0
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcC-----e
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRG-----E 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~ 447 (538)
....|+|.+.+.|. .+.|+|+|++|+||+.. +.+||||++++.+ .
T Consensus 16 ~~~~G~l~~~l~~~---------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 68 (149)
T 1a25_A 16 MERRGRIYIQAHID---------------------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSES 68 (149)
T ss_dssp -CTTCEEEEEEEES---------------------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSS
T ss_pred CCcceEEEEEEEec---------------------------CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcc
Confidence 45579999999872 47899999999999863 5789999999973 5
Q ss_pred eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCe
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNG 527 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 527 (538)
.++|++++++.||+|||.|.|.+........|.|+|||++. +++|++||++.++|.++..+ ..++||+|.+...|
T Consensus 69 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g 143 (149)
T 1a25_A 69 KQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL----TSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEG 143 (149)
T ss_dssp CEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS----SSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHH
T ss_pred eEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC----CCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCC
Confidence 67999999999999999999999764334689999999985 56899999999999999876 46899999876555
Q ss_pred EE
Q 046405 528 RI 529 (538)
Q Consensus 528 ~i 529 (538)
++
T Consensus 144 ~~ 145 (149)
T 1a25_A 144 EY 145 (149)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=147.32 Aligned_cols=119 Identities=16% Similarity=0.242 Sum_probs=102.5
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEE---cCeeE
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILF---RGEEK 449 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~---~~~~~ 449 (538)
....|+|.+++.|.+. .+.|.|+|++|++|+.. +.+||||++++ +.+++
T Consensus 17 ~~~~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~ 71 (143)
T 3f04_A 17 VEKLGKLQYSLDYDFQ-------------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF 71 (143)
T ss_dssp CCCCCEEEEEEEEETT-------------------------TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCE
T ss_pred ccCeEEEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccE
Confidence 3568999999999864 78999999999999873 57999999999 44578
Q ss_pred EeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCC
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLID 523 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 523 (538)
+|++++++.||+|||.|.|.+.... ....|.|+|||++. +++|++||++.++|.++..+....+||+|+.
T Consensus 72 kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 72 ETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp ECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS----SSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred ECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC----CCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 9999999999999999999986421 23689999999985 5789999999999999988777889999974
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9e-18 Score=147.63 Aligned_cols=109 Identities=28% Similarity=0.450 Sum_probs=95.0
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEE-EeCC--CCCeEEEEEE
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLV-VKDP--EYQALELQVY 331 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~-v~~~--~~~~L~v~v~ 331 (538)
.+.+.|.|+|++|++|+.++..|.+||||++++.+.. ...++|++++++.||.|||+|.|. +... ....|.|+||
T Consensus 26 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~ 105 (142)
T 2chd_A 26 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVC 105 (142)
T ss_dssp GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence 4678999999999999999988999999999997522 345799999999999999999998 5322 1368999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
|++.+++|++||++.+++.++..++....|++|.
T Consensus 106 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 139 (142)
T 2chd_A 106 DEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139 (142)
T ss_dssp EECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred ECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence 9999999999999999999999988888888874
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=144.38 Aligned_cols=107 Identities=23% Similarity=0.348 Sum_probs=87.1
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeC---CCCCeEEEEEE
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKD---PEYQALELQVY 331 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~ 331 (538)
...|.|.|+|++|+||+.++..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+.. .....|.|+||
T Consensus 15 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~ 94 (129)
T 2bwq_A 15 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW 94 (129)
T ss_dssp TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred cCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEE
Confidence 4568999999999999999999999999999995422 345799999999999999999999532 23579999999
Q ss_pred ecCCCCC--CCccEEEEEeCccCCCCCCceEEEec
Q 046405 332 DWEKVGH--HDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 332 d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|++..++ |++||++.+++.++.... ...|++|
T Consensus 95 d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 95 DQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp EC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred ECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 9999887 999999999999998754 6778876
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=148.27 Aligned_cols=111 Identities=26% Similarity=0.361 Sum_probs=93.3
Q ss_pred CCceeEEEEEEEEecCCCcC-CC------CCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeE
Q 046405 256 QKPVGILNVKVLRAMKLKKK-DL------IGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQAL 326 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~-d~------~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L 326 (538)
....|.|.|+|++|++|+.+ +. .|.+||||++++.+.....++|++++++.||+|||+|.|.+... ....|
T Consensus 22 ~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L 101 (147)
T 2enp_A 22 DLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTL 101 (147)
T ss_dssp ETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEE
T ss_pred cCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEE
Confidence 34578999999999999984 33 35899999999976544567999999999999999999998542 24589
Q ss_pred EEEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 327 ELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 327 ~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
.|+|||++.+++|++||++.++|.++........|+.|.+
T Consensus 102 ~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 141 (147)
T 2enp_A 102 LLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP 141 (147)
T ss_dssp EEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred EEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence 9999999999999999999999999987766677887743
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-18 Score=149.66 Aligned_cols=108 Identities=27% Similarity=0.415 Sum_probs=93.8
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCC-----------CceeeeecCCCCCceeeeEEEEE-EeC--CCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL-----------PSKKTTVKHRNLNPEWNEEFGLV-VKD--PEYQ 324 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~~T~v~~~t~nP~Wne~f~f~-v~~--~~~~ 324 (538)
.|.|+|+|++|++|+.+|..|.+||||++++.+... ..++|+++++|.||.|||+|.|. +.. ....
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~ 96 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence 589999999999999999999999999999986532 24689999999999999999997 532 2367
Q ss_pred eEEEEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 325 ALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 325 ~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
.|.|+|||+|.+++|++||++.++|.++..+.....|++|..
T Consensus 97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 138 (142)
T 1rh8_A 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence 899999999999999999999999999987767778998854
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-17 Score=149.45 Aligned_cols=117 Identities=18% Similarity=0.338 Sum_probs=95.5
Q ss_pred CceEEEEEEeeeccCCC---CCCCCCeEEEEEcC------eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEc
Q 046405 416 GGGLLVVILHEAQDVEG---KYHTNPSARILFRG------EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVIST 486 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~------~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
..|.|+|+|++|++|+. .+.+||||++++++ ..++|++++++.||+|||.|.|.+.. ....|.|+|||+
T Consensus 6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~L~~~V~d~ 83 (176)
T 3m7f_B 6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP--QRHRILFEVFDE 83 (176)
T ss_dssp TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT--TTCEEEEEEEEC
T ss_pred CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC--CCCEEEEEEEEC
Confidence 58999999999999986 36799999999975 45799999999999999999999985 347899999999
Q ss_pred cCCCCCCCCCCccEEEEEecchhccccee-c-----eEEEcCCC-----CCeEEEEEEEEEeC
Q 046405 487 SSRMGLLHPKETLGYIGINLADVVNNKRI-N-----EKYHLIDS-----KNGRIQIELQWRAS 538 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l~~~~~~-~-----~~~~L~~~-----~~G~i~l~~~wkp~ 538 (538)
+. +++|++||++.|+|.++...... . +||+|... ..|+|+|++.|.|+
T Consensus 84 d~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 84 NR----LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp C--------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CC----CCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 75 57899999999999999875432 2 79999753 26999999999984
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=146.70 Aligned_cols=107 Identities=34% Similarity=0.517 Sum_probs=93.6
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCC-CCeEEEEEEecCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPE-YQALELQVYDWEK 335 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~~~ 335 (538)
.|.|+|+|++|++|+.++..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+.... ...|.|+|||++.
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 109 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 109 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence 57899999999999999988999999999997532 34579999999999999999999987542 4689999999999
Q ss_pred CCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 336 VGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
+++|++||++.+++.++..+ ....|++|..
T Consensus 110 ~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 110 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 99999999999999999876 4778888753
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-18 Score=151.17 Aligned_cols=118 Identities=18% Similarity=0.302 Sum_probs=99.3
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC---e--
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG---E-- 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~---~-- 447 (538)
....|+|++++.|.+. .+.|+|+|++|+||+. .+.+||||++++.. .
T Consensus 26 ~~~~G~l~~sl~y~~~-------------------------~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~ 80 (155)
T 2z0u_A 26 AVGATRIQIALKYDEK-------------------------NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTT 80 (155)
T ss_dssp --CCEEEEEEEEEETT-------------------------TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHH
T ss_pred cCCcEEEEEEEEEcCC-------------------------CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCc
Confidence 3567999999999854 7899999999999986 36799999999965 2
Q ss_pred -eEEeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcc-cceeceEEEcC
Q 046405 448 -EKKTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVN-NKRINEKYHLI 522 (538)
Q Consensus 448 -~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~-~~~~~~~~~L~ 522 (538)
++||+++++|.||+|||.|+|.+.... ....|.|+|||++. ++++++||++.++|+++.. .....+||+|.
T Consensus 81 ~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~----~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 81 CLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDR----SHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp HEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECT----TSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred cceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCC----CCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 679999999999999999999986421 13579999999985 5789999999999999964 45678999986
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=144.19 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=91.9
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC-CCCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEEe
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD-KLPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVYD 332 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~-~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d 332 (538)
....+.|+|+|++|++ +|..|.+||||++++.+. ....++|+++++|+||.|||+|.|.+.... ...|.|+|||
T Consensus 22 ~~~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d 98 (138)
T 1wfm_A 22 DCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRT 98 (138)
T ss_dssp ETTTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEE
T ss_pred eCCCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEE
Confidence 3457899999999993 677899999999999542 223469999999999999999999986442 5689999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
+|.+++|++||++.++|.++..+.....|++|..
T Consensus 99 ~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 99 CDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp CCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred CCCCCCCcEEEEEEEEcccccCcccccceeeCcC
Confidence 9999999999999999999987667788998854
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-18 Score=149.77 Aligned_cols=111 Identities=23% Similarity=0.349 Sum_probs=96.2
Q ss_pred CCceeEEEEEEEEecCCCcCC-CCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKD-LIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQV 330 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v 330 (538)
....|.|.|+|++|+||+.++ ..|.+||||++++.+.. ..+++|+++++|.||.|||+|.|.+.... ...|.|+|
T Consensus 19 ~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V 98 (148)
T 3fdw_A 19 EQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSV 98 (148)
T ss_dssp ETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEE
T ss_pred eCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEE
Confidence 345789999999999999888 57899999999997543 23579999999999999999999986542 45799999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
||+|.+++|++||++.++|.++..+.....|++|..
T Consensus 99 ~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 134 (148)
T 3fdw_A 99 WHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHG 134 (148)
T ss_dssp EEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBC
T ss_pred EECCCCcCCcEEEEEEEEcccccccCCccceEECcC
Confidence 999999999999999999999987777889999854
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=168.06 Aligned_cols=177 Identities=21% Similarity=0.238 Sum_probs=136.1
Q ss_pred eeEEEEEcCCCCe-EEEEEeEecccccc-cccHHHHHHHHHHHHHhhhccC-----CCcee-eccccc------------
Q 046405 192 FANIYVSLMEKPH-VDFGIKLFGADAMA-IPGLYTYVQGLIKDQVANMYLW-----PKALE-VQIMDP------------ 251 (538)
Q Consensus 192 ~~~~~~sf~~~P~-id~~~~~~g~~~~~-iP~l~~~i~~~i~~~i~~~~v~-----P~~~~-~pl~~~------------ 251 (538)
+..|.=|+...|. |+|.+.|+ .+++. -+.....++.++.+++.+.-.+ |..-- .++...
T Consensus 304 ~~~W~~Sv~~~P~~I~~~l~PI-~~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~~~l~g~~C~C~C~~~~~t 382 (540)
T 3nsj_A 304 FSTWTASLPSNPGLVDYSLEPL-HTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQDSKVT 382 (540)
T ss_dssp HHHHHHHTTTSCEEEEEEEEEG-GGGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTEEECSSCTTCEEESCTTTB
T ss_pred HHHHHHHHhhCCceEEEEEEEH-HHhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCCccCCCCceEeeCCCCCCc
Confidence 5566667777784 59999998 56554 4667789999999999987666 42111 122211
Q ss_pred ---ccccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeC-CCCCeEE
Q 046405 252 ---AKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKD-PEYQALE 327 (538)
Q Consensus 252 ---~~~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~-~~~~~L~ 327 (538)
.+......|.|+|+|++|++|+. |..|++||||+++++++. .+|+++++++||+|||+|.|.+.. ...+.|+
T Consensus 383 ~~~~C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~---~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~ 458 (540)
T 3nsj_A 383 NQDCCPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQE---FRTGVVWNNNNPRWTDKMDFENVLLSTGGPLR 458 (540)
T ss_dssp CGGGCBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEE---EECCCBCSCSSCBCCCCEEEEEEETTTCCCEE
T ss_pred ccccccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEe---eeeeeecCCCCCCCCeEEEEEEecCCCCCEEE
Confidence 11344568999999999999998 989999999999998653 699999999999999999998653 3578899
Q ss_pred EEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 328 LQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 328 v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
|+|||+|..++||+||++.++|.. + .++.|+++ ..|+|+++++..-
T Consensus 459 ~~V~D~D~~~~dD~LG~~~~~L~~---g-~~~~~~~l-------------~~G~l~~~~~~~c 504 (540)
T 3nsj_A 459 VQVWDADYGWDDDLLGSCDRSPHS---G-FHEVTCEL-------------NHGRVKFSYHAKC 504 (540)
T ss_dssp EEEEECCSSSCCEEEEEEEECCCS---E-EEEEEEEC-------------SSSEEEEEEEEEE
T ss_pred EEEEECCCCCCCCEEEEEEEEeeC---C-cEEEEEEc-------------CCeEEEEEEEEEE
Confidence 999999999999999999999882 2 35566653 2588888876544
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=145.70 Aligned_cols=109 Identities=26% Similarity=0.307 Sum_probs=92.4
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 332 (538)
...+.|.|+|++|++|+.++..| +||||++++.+.. ...++|+++++|.||+|||+|.|.+... ....|.|+|||
T Consensus 21 ~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d 99 (142)
T 2dmg_A 21 SQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKN 99 (142)
T ss_dssp TTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEE
T ss_pred CCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEE
Confidence 45789999999999999999888 9999999996432 3567999999999999999999998532 24589999999
Q ss_pred cCCCCC--CCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 333 WEKVGH--HDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 333 ~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
++.+++ |++||++.++|.++..+.....|++|..
T Consensus 100 ~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~ 135 (142)
T 2dmg_A 100 SGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE 135 (142)
T ss_dssp CCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred CCCccccCCcEEEEEEEecccccccccccceeeccC
Confidence 998763 5799999999999987777778888754
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=142.69 Aligned_cols=106 Identities=24% Similarity=0.384 Sum_probs=89.1
Q ss_pred ceEEEEEEeeeccCCC--CCCCCCeEEEEE-----cCeeEEeecccCCCCCcCcceEEEE-ecCCC-CCCeEEEEEEEcc
Q 046405 417 GGLLVVILHEAQDVEG--KYHTNPSARILF-----RGEEKKTKRIKKNRDPRWEEEFQFT-LEEPP-TDDKLHVEVISTS 487 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~--~~~~dpyv~v~~-----~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~v~V~d~~ 487 (538)
.+.|.|+|++|+||+. .+.+||||++++ +..++||++++++.||+|||.|.|. +.... ....|.|+|||++
T Consensus 19 ~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d 98 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE 98 (134)
T ss_dssp TTEEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECC
Confidence 6899999999999986 357999999999 3456799999999999999999999 65311 3468999999998
Q ss_pred CCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCC
Q 046405 488 SRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKN 526 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 526 (538)
. +++|++||++.++|+++..+....+||+|.+.+.
T Consensus 99 ~----~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~ 133 (134)
T 2b3r_A 99 S----LRENFFLGGITLPLKDFNLSKETVKWYQLTAATY 133 (134)
T ss_dssp S----SSCCEEEEEEEEEGGGSCTTSCEEEEEECBC---
T ss_pred C----CCCCcEEEEEEEEhhhccCCCCcceeEECCCccC
Confidence 5 5788999999999999988777899999987543
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.4e-18 Score=147.81 Aligned_cols=119 Identities=17% Similarity=0.346 Sum_probs=100.1
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcCe-----
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRGE----- 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~----- 447 (538)
....|+|++++.|. .|.|.|+|++|+||+.. +.+||||++++.+.
T Consensus 3 ~~~~G~i~~~l~y~---------------------------~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~ 55 (142)
T 1rh8_A 3 HPITGEIQLQINYD---------------------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVM 55 (142)
T ss_dssp CCCCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCE
T ss_pred CCcceEEEEEEEEc---------------------------CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCccc
Confidence 34689999999996 47899999999999873 57899999999763
Q ss_pred ---------eEEeecccCCCCCcCcceEEEE-ecCC-CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceec
Q 046405 448 ---------EKKTKRIKKNRDPRWEEEFQFT-LEEP-PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRIN 516 (538)
Q Consensus 448 ---------~~kT~v~~~t~nP~wne~f~f~-v~~~-~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~ 516 (538)
+++|++++++.||+|||.|.|. +... .....|.|+|||++. +++|++||++.++|+++.......
T Consensus 56 ~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~ 131 (142)
T 1rh8_A 56 VVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDR----FSSNDFLGEVLIDLSSTSHLDNTP 131 (142)
T ss_dssp ECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECS----SSCEEEEEEEEEETTSCGGGTTCC
T ss_pred ccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCC----CCCCceEEEEEEeccccccCCCCC
Confidence 3699999999999999999997 5321 134689999999985 578999999999999998766778
Q ss_pred eEEEcCCCC
Q 046405 517 EKYHLIDSK 525 (538)
Q Consensus 517 ~~~~L~~~~ 525 (538)
+||+|.+..
T Consensus 132 ~W~~L~~~~ 140 (142)
T 1rh8_A 132 RWYPLKEQT 140 (142)
T ss_dssp EEEECBCCC
T ss_pred eEEECCccC
Confidence 999998753
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=150.67 Aligned_cols=108 Identities=25% Similarity=0.383 Sum_probs=94.3
Q ss_pred ceeEEEEEEEEecCCCcCCC-CCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEE-ec
Q 046405 258 PVGILNVKVLRAMKLKKKDL-IGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVY-DW 333 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~-d~ 333 (538)
..|.|.|+|++|++|+.+|. .|.+||||++++.+.. ...++|+++++|.||+|||+|.|.+.. ....|.|+|| |+
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP-QGKVLQVIVWGDY 106 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC-TTEEEEEEEEEEC
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC-CCCEEEEEEEEcC
Confidence 47899999999999999985 6999999999997542 135699999999999999999999854 4689999999 99
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
|.+++|++||++.++|.++..++....|++|..
T Consensus 107 d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~ 139 (171)
T 2q3x_A 107 GRMDHKCFMGVAQILLEELDLSSMVIGWYKLFP 139 (171)
T ss_dssp STTCSSEEEEEEEECGGGSCTTSCEEEEEECBC
T ss_pred CCCCCCCEEEEEEEEHHHcccCCCcceeEECCC
Confidence 999999999999999999998878889999865
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=145.32 Aligned_cols=120 Identities=22% Similarity=0.348 Sum_probs=100.1
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----e
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----E 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~ 447 (538)
....|+|++++.|.+. .+.|.|+|++|+||+. .+ +||||++++.. .
T Consensus 7 ~~~~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~ 60 (142)
T 2dmg_A 7 GSPLGQIQLTIRHSSQ-------------------------RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSG 60 (142)
T ss_dssp SCSSCEEEEEEEEETT-------------------------TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSS
T ss_pred CCCcceEEEEEEEeCC-------------------------CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCC
Confidence 5678999999999864 7899999999999986 35 99999999943 5
Q ss_pred eEEeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCC--CCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLH--PKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~--~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
+++|++++++.||+|||.|.|.+.... ....|.|+|||++. ++ .|++||++.++|.++.......+||+|.+.
T Consensus 61 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 61 RRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG----FLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCC----SSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred cccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCC----ccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 679999999999999999999985311 12489999999985 33 357999999999998876677899999875
Q ss_pred C
Q 046405 525 K 525 (538)
Q Consensus 525 ~ 525 (538)
+
T Consensus 137 ~ 137 (142)
T 2dmg_A 137 S 137 (142)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=144.52 Aligned_cols=109 Identities=23% Similarity=0.330 Sum_probs=92.5
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeC---CCCCeEEEEEE
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKD---PEYQALELQVY 331 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~~L~v~v~ 331 (538)
...+.|+|+|++|++|+.++..|.+||||++++.+. ....++|++++++.||+|||+|.|.+.. .....|.|+||
T Consensus 18 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~ 97 (141)
T 1v27_A 18 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW 97 (141)
T ss_dssp TTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEE
T ss_pred CCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEE
Confidence 346899999999999999999999999999998432 2345699999999999999999999532 23579999999
Q ss_pred ecCCCCC--CCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 332 DWEKVGH--HDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 332 d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
|++.+++ |++||++.+++.++.... ...|++|..
T Consensus 98 d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~ 133 (141)
T 1v27_A 98 DQARVREEESEFLGEILIELETALLDD-EPHWYKLQT 133 (141)
T ss_dssp EBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBC
T ss_pred ECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcc
Confidence 9999887 999999999999997654 778998854
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=139.50 Aligned_cols=120 Identities=18% Similarity=0.324 Sum_probs=100.1
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC----CCCCCeEEEEEcC---ee
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK----YHTNPSARILFRG---EE 448 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~~~---~~ 448 (538)
....|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.. ..
T Consensus 5 ~~~~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~ 59 (138)
T 1ugk_A 5 SSGLGTLFFSLEYNFE-------------------------RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHK 59 (138)
T ss_dssp CCCCCEEEEEEEEEGG-------------------------GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSE
T ss_pred CCccEEEEEEEEEECC-------------------------CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCce
Confidence 4568999999999875 78999999999999862 5689999999963 57
Q ss_pred EEeecccCCCCCcCcceEEEE-ecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccc-eeceEEEcCCC
Q 046405 449 KKTKRIKKNRDPRWEEEFQFT-LEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNK-RINEKYHLIDS 524 (538)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~ 524 (538)
++|++++++.||+|||.|.|. +.... ....|.|+|||++. +++|++||++.++|.++.... ....|++|...
T Consensus 60 ~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 134 (138)
T 1ugk_A 60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR----FSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp EECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS----SCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred EecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCC----CCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence 899999999999999999996 54321 23589999999985 578999999999999998754 34567888764
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-17 Score=144.37 Aligned_cols=109 Identities=22% Similarity=0.325 Sum_probs=92.9
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEe--CCCCCeEEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVK--DPEYQALELQVY 331 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~--~~~~~~L~v~v~ 331 (538)
....|.|.|+|++|++|+..+ .|.+||||++++.+. ....++|+++++|.||.|||+|.|.+. +. ...|.|+||
T Consensus 23 ~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~L~i~V~ 100 (153)
T 3fbk_A 23 DAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDD-QKRLLVTVW 100 (153)
T ss_dssp EESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGT-TSEEEEEEE
T ss_pred ECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHh-CCEEEEEEE
Confidence 346799999999999999998 699999999999543 234579999999999999999999984 33 356999999
Q ss_pred ecCCCCC-CCccEEEEEeCccCCC-CCCceEEEeccc
Q 046405 332 DWEKVGH-HDKMGMNVIPLKDITP-EEPREMTLDLLK 366 (538)
Q Consensus 332 d~~~~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~l~~ 366 (538)
|++.+++ |++||++.+++.++.. +.....|++|..
T Consensus 101 d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~ 137 (153)
T 3fbk_A 101 NRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLG 137 (153)
T ss_dssp ECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBC
T ss_pred eCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCC
Confidence 9998876 9999999999999985 667788998854
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-17 Score=143.44 Aligned_cols=120 Identities=19% Similarity=0.324 Sum_probs=99.8
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcC-----e
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRG-----E 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~ 447 (538)
....|+|.+++.|.+. .+.|.|+|++|++|+.. +.+||||++++.+ .
T Consensus 12 ~~~~G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 66 (142)
T 2chd_A 12 ATTLGALEFSLLYDQD-------------------------NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSN 66 (142)
T ss_dssp --CCCEEEEEEEEEGG-------------------------GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGG
T ss_pred CCccceEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcc
Confidence 5668999999999865 78999999999999873 5789999999975 5
Q ss_pred eEEeecccCCCCCcCcceEEEE-ecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFT-LEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~-v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
.++|++++++.||+|||.|.|. +.... ....|.|+|||++. +++|++||++.++|.++..+.....|++|...
T Consensus 67 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~p 141 (142)
T 2chd_A 67 KLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK----FGHNEFIGETRFSLKKLKANQRKNFNICLERV 141 (142)
T ss_dssp EEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECT----TSCEEEEEEEEEEGGGCCTTCCEEEEEECBCC
T ss_pred eeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCC----CCCCcEEEEEEEEHHHcCCCCccEEEEecccC
Confidence 6799999999999999999998 54211 12589999999985 56789999999999999877766777777653
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=138.03 Aligned_cols=114 Identities=19% Similarity=0.342 Sum_probs=95.5
Q ss_pred CceEEEEEEeeeccCCCC---CCCCCeEEEEEcC--eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCC
Q 046405 416 GGGLLVVILHEAQDVEGK---YHTNPSARILFRG--EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRM 490 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~ 490 (538)
....|+|+|++|++|+.. +.+||||++++++ ..++|++++++.||+|||.|.|.+... +.|.|+|||++.
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~l~~~v~d~d~-- 77 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT---DSITISVWNHKK-- 77 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT---CCEEEEEEEGGG--
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC---CEEEEEEEECCC--
Confidence 357899999999999763 5799999999975 678999999999999999999999764 459999999985
Q ss_pred CCCCC---CCccEEEEEecchhcc-cceeceEEEcCCC-------CCeEEEEEEEEE
Q 046405 491 GLLHP---KETLGYIGINLADVVN-NKRINEKYHLIDS-------KNGRIQIELQWR 536 (538)
Q Consensus 491 g~~~~---d~~lG~~~i~L~~l~~-~~~~~~~~~L~~~-------~~G~i~l~~~wk 536 (538)
+++ |++||++.+++.++.. .....+|++|... ..|+|.+++++|
T Consensus 78 --~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~r 132 (132)
T 3pyc_A 78 --IHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQTR 132 (132)
T ss_dssp --TTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEEC
T ss_pred --CCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEcC
Confidence 344 7999999999999854 3345689999754 169999999875
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-17 Score=149.43 Aligned_cols=105 Identities=18% Similarity=0.346 Sum_probs=91.1
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcC-----e
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRG-----E 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~ 447 (538)
....|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.+ .
T Consensus 20 ~~~~G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~ 74 (166)
T 2cm5_A 20 IEERGKILVSLMYSTQ-------------------------QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKA 74 (166)
T ss_dssp CCCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CC
T ss_pred cCccceEEEEEEEECC-------------------------CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccc
Confidence 5678999999999864 78999999999999863 5799999999976 5
Q ss_pred eEEeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchh
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADV 509 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l 509 (538)
.++|++++++.||+|||.|.|.+.... ....|.|+|||++. +++|++||++.++|.++
T Consensus 75 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 75 KHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI----GKSNDYIGGCQLGISAK 133 (166)
T ss_dssp EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCEEEEEEEEETTCC
T ss_pred eEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCC----CCCCcEEEeEEEecccC
Confidence 679999999999999999999996421 24589999999985 57899999999999985
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=138.27 Aligned_cols=100 Identities=23% Similarity=0.279 Sum_probs=79.6
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecC-CCCCceeeeEEEEEEeCCCCCeEEEEEEecCC
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNLNPEWNEEFGLVVKDPEYQALELQVYDWEK 335 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~ 335 (538)
.++|.|.|+|++|+++.. .|.+||||+++ . +. .+|+++. ++.||.|||+|.|.+.+. ...|.|+|||+|
T Consensus 2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d- 71 (131)
T 2cjt_A 2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V-QN---VKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG- 71 (131)
T ss_dssp CCCEEEEEEEEEEECSSC---GGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-
T ss_pred CcceEEEEEEEEeECCCC---CCCcCeEEEEE-e-cC---EEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-
Confidence 467999999999998853 57899999999 2 22 3555554 799999999999999765 567999999999
Q ss_pred CCCCCccEEEEEeCccCCCCC--CceEEEeccc
Q 046405 336 VGHHDKMGMNVIPLKDITPEE--PREMTLDLLK 366 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~--~~~~~~~l~~ 366 (538)
+++|++||++.++|+++.... ....|.+++.
T Consensus 72 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~ 104 (131)
T 2cjt_A 72 LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 104 (131)
T ss_dssp SSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred CCCCCeEEEEEEEHHHhhhcCCCCccccEEccc
Confidence 889999999999999987543 2224555543
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=143.61 Aligned_cols=120 Identities=19% Similarity=0.319 Sum_probs=99.5
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcC-----e
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRG-----E 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~ 447 (538)
....|+|++++.|.|. .+.|.|+|++|+||+.. +.+||||++++.+ .
T Consensus 8 ~~~~G~l~~~l~y~~~-------------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~ 62 (159)
T 1tjx_A 8 LEKLGDICFSLRYVPT-------------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK 62 (159)
T ss_dssp GGCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEE
T ss_pred cCcCCeEEEEEEEcCC-------------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceec
Confidence 5678999999999865 78999999999999863 5789999999963 3
Q ss_pred eEEeecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecch----------hcc--cce
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLAD----------VVN--NKR 514 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~----------l~~--~~~ 514 (538)
.++|++++++.||+|||.|.|.+..... ...|.|+|||++. +++|++||++.+++.. ++. +..
T Consensus 63 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~----~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~ 138 (159)
T 1tjx_A 63 KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK----IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRP 138 (159)
T ss_dssp EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCC
T ss_pred eeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCC----CCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCe
Confidence 5699999999999999999999864311 3579999999985 5789999999999984 333 235
Q ss_pred eceEEEcCCC
Q 046405 515 INEKYHLIDS 524 (538)
Q Consensus 515 ~~~~~~L~~~ 524 (538)
..+||+|...
T Consensus 139 ~~~W~~L~~~ 148 (159)
T 1tjx_A 139 IAQWHTLQVE 148 (159)
T ss_dssp EEEEEECBCH
T ss_pred eeeEEECcCc
Confidence 6899999764
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=155.76 Aligned_cols=132 Identities=17% Similarity=0.262 Sum_probs=113.5
Q ss_pred ccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC---eeEE
Q 046405 377 KSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG---EEKK 450 (538)
Q Consensus 377 ~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~---~~~k 450 (538)
...|+|.+++.|.+. .+.|+|+|++|+||+. .+.+||||+++++. +.++
T Consensus 3 ~~~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~ 57 (284)
T 2r83_A 3 EKLGKLQYSLDYDFQ-------------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFE 57 (284)
T ss_dssp CCCCEEEEEEEEETT-------------------------TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEE
T ss_pred cceeEEEEEEEEECC-------------------------CCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEe
Confidence 458999999999864 7899999999999986 35799999999964 4679
Q ss_pred eecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC-----
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS----- 524 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~----- 524 (538)
|++++++.||+|||.|.|.+.... ....|.|+|||++. +++|++||++.++|.++..+....+||+|...
T Consensus 58 T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~----~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~ 133 (284)
T 2r83_A 58 TKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQ 133 (284)
T ss_dssp CCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS----SSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCC
T ss_pred CCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC----CCCCceeEEEEEcchhcccCCcceeEEEeeccccccc
Confidence 999999999999999999986422 24689999999985 57899999999999999887778999999753
Q ss_pred -CCeEEEEEEEEEe
Q 046405 525 -KNGRIQIELQWRA 537 (538)
Q Consensus 525 -~~G~i~l~~~wkp 537 (538)
..|+|.+.+.|.|
T Consensus 134 ~~~G~i~l~l~~~p 147 (284)
T 2r83_A 134 EKLGDICFSLRYVP 147 (284)
T ss_dssp CCCCEEEEEEEEET
T ss_pred cccccEEEEEEecC
Confidence 3599999999876
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-17 Score=146.19 Aligned_cols=119 Identities=16% Similarity=0.229 Sum_probs=93.4
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEc--Ce---
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFR--GE--- 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~--~~--- 447 (538)
....|+|.+++.|.|. .+.|.|+|++|+||+.. +.+||||++++. +.
T Consensus 13 ~~~~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~ 67 (153)
T 1w15_A 13 PSGRGELLVSLCYQST-------------------------TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRIS 67 (153)
T ss_dssp ---CCEEEEEEEEETT-------------------------TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEE
T ss_pred CccccEEEEEEEEcCC-------------------------CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEec
Confidence 4578999999999865 78999999999999863 578999999994 33
Q ss_pred eEEeecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 525 (538)
+++|++++++.||+|||.|.|.+..... ...|.|+|||++. +++|++||++.++|++ ......+||+|...+
T Consensus 68 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~----~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~p 140 (153)
T 1w15_A 68 KKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER----GSRNEVIGRLVLGATA--EGSGGGHWKEICDFP 140 (153)
T ss_dssp EEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT----TSCCEEEEEEEESTTC--CSHHHHHHHHHHHST
T ss_pred eEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCC----CCCCcEEEEEEECCCC--CchHHHHHHHHHhCC
Confidence 5699999999999999999999876422 3579999999985 5789999999999988 223345666665443
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=143.28 Aligned_cols=109 Identities=36% Similarity=0.555 Sum_probs=91.0
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d 332 (538)
...|.|.|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+.... ...|.|+|||
T Consensus 22 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d 101 (159)
T 1tjx_A 22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD 101 (159)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEE
Confidence 457899999999999999998899999999999643 223569999999999999999999986432 4679999999
Q ss_pred cCCCCCCCccEEEEEeCccC------------CCCCCceEEEecc
Q 046405 333 WEKVGHHDKMGMNVIPLKDI------------TPEEPREMTLDLL 365 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~~~~l~ 365 (538)
+|.+++|++||++.+++..+ ..+.....|++|.
T Consensus 102 ~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~ 146 (159)
T 1tjx_A 102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 146 (159)
T ss_dssp CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred CCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECc
Confidence 99999999999999999964 2234556777764
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-17 Score=140.49 Aligned_cols=97 Identities=32% Similarity=0.472 Sum_probs=84.7
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d 332 (538)
...|.|.|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+.... ...|.|+|||
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d 92 (138)
T 3n5a_A 13 PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMD 92 (138)
T ss_dssp TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence 4568999999999999999988999999999997532 23568999999999999999999986543 3689999999
Q ss_pred cCCCCCCCccEEEEEeCccCC
Q 046405 333 WEKVGHHDKMGMNVIPLKDIT 353 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~ 353 (538)
++.+++|++||++.+++.++.
T Consensus 93 ~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 93 KDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp CCSSSCCEEEEEEEESSSSCH
T ss_pred CCCCCCCcEEEEEEEccccCC
Confidence 999999999999999999753
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=145.11 Aligned_cols=116 Identities=21% Similarity=0.269 Sum_probs=99.0
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC----CCCCCCeEEEEEcCe----
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG----KYHTNPSARILFRGE---- 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~----~~~~dpyv~v~~~~~---- 447 (538)
....|+|++.+.|. .+.|.|+|++|+||+. .+.+||||++++.+.
T Consensus 15 ~~~~G~l~~~l~y~---------------------------~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~ 67 (171)
T 2q3x_A 15 TPAMGDIQIGMEDK---------------------------KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACI 67 (171)
T ss_dssp --CCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEE
T ss_pred CCCccEEEEEEEEC---------------------------CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccc
Confidence 34579999999992 5899999999999986 267899999999642
Q ss_pred -eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEE-EccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 448 -EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVI-STSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 448 -~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~-d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
++||++++++.||+|||.|+|.+.. ....|.|+|| |++. +++|++||++.++|+++..+....+||+|.+.
T Consensus 68 ~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~L~~~V~~d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 68 AKKKTRIARKTLDPLYQQSLVFDESP--QGKVLQVIVWGDYGR----MDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp EEEECCCCCSCSSCEEEEEEECSSCC--TTEEEEEEEEEECST----TCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred cceeCccCCCCCCCCCCcEEEEEecC--CCCEEEEEEEEcCCC----CCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 6699999999999999999999864 4578999999 8875 57889999999999999877778999999865
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=142.12 Aligned_cols=98 Identities=33% Similarity=0.482 Sum_probs=85.9
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEE
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVY 331 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~ 331 (538)
....|.|.|+|++|++|+.++..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 33 ~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~ 112 (166)
T 2cm5_A 33 STQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVW 112 (166)
T ss_dssp ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEE
T ss_pred ECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEE
Confidence 34578999999999999999989999999999997632 3467999999999999999999998643 2568999999
Q ss_pred ecCCCCCCCccEEEEEeCccCC
Q 046405 332 DWEKVGHHDKMGMNVIPLKDIT 353 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~ 353 (538)
|++.+++|++||++.+++.++.
T Consensus 113 d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 113 DYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp ECCSSSCCEEEEEEEEETTCCH
T ss_pred ECCCCCCCcEEEeEEEecccCC
Confidence 9999999999999999999863
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=138.68 Aligned_cols=115 Identities=19% Similarity=0.384 Sum_probs=93.5
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEcC-----eeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFRG-----EEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~-----~~~k 450 (538)
+|+|.+++.|.+. .+.|.|+|++|+||+.. +.+||||++++.+ .+++
T Consensus 2 ~G~l~~sl~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~k 56 (138)
T 3n5a_A 2 RGELLLSLCYNPS-------------------------ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKK 56 (138)
T ss_dssp CCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEEEcCC-------------------------CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEe
Confidence 6999999999864 78999999999999873 5799999999964 3569
Q ss_pred eecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
|++++++.||+|||.|.|.+..... ...|.|+|||++. +++|++||++.++|+++.. ...+|++|...
T Consensus 57 T~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~----~~~~~~lG~~~i~l~~~~~--~~~~W~~l~~~ 125 (138)
T 3n5a_A 57 TVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDK----LSRNDVIGKIYLSWKSGPG--EVKHWKDMIAR 125 (138)
T ss_dssp CCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCS----SSCCEEEEEEEESSSSCHH--HHHHHHHHHHS
T ss_pred CccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCC----CCCCcEEEEEEEccccCCh--HHHHHHHHHhC
Confidence 9999999999999999999865321 2579999999985 5789999999999997432 23455555443
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=143.29 Aligned_cols=115 Identities=19% Similarity=0.315 Sum_probs=98.3
Q ss_pred CceEEEEEEeeeccCC-C--CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 416 GGGLLVVILHEAQDVE-G--KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~-~--~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
..+.|+|+|++|++|+ . .+.+||||+++++++.+||++++++.||+|||.|.|.+.. ...|.|+|||++.
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~---~~~L~~~V~D~d~---- 106 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQT---- 106 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCS----
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC---CCEEEEEEEECCC----
Confidence 4789999999999998 3 2359999999999988999999999999999999999853 5789999999985
Q ss_pred CCCCCccEEEEEecchhcccc-----eeceEEEcCCC-----CCeEEEEEEEEEe
Q 046405 493 LHPKETLGYIGINLADVVNNK-----RINEKYHLIDS-----KNGRIQIELQWRA 537 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~~~-----~~~~~~~L~~~-----~~G~i~l~~~wkp 537 (538)
+++|++||++.++|.++.... ....|++|... ..|+|.+.+.+.|
T Consensus 107 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~ 161 (173)
T 2nq3_A 107 LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ 161 (173)
T ss_dssp SSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred CCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeee
Confidence 578999999999999998532 13579999764 2699999998875
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.4e-17 Score=145.89 Aligned_cols=107 Identities=30% Similarity=0.344 Sum_probs=83.2
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d 332 (538)
...+.|.|+|++|++|+.++..|.+||||++++.+.. ..+++|+++++++||.|||+|.|.+.... ...|.|+|||
T Consensus 27 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d 106 (153)
T 1w15_A 27 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLD 106 (153)
T ss_dssp TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred CCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEe
Confidence 3568999999999999999988999999999995432 23569999999999999999999987543 4689999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
++.+++|++||++.+++.+. +.....|+++.
T Consensus 107 ~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~l~ 137 (153)
T 1w15_A 107 SERGSRNEVIGRLVLGATAE--GSGGGHWKEIC 137 (153)
T ss_dssp CCTTSCCEEEEEEEESTTCC--SHHHHHHHHHH
T ss_pred CCCCCCCcEEEEEEECCCCC--chHHHHHHHHH
Confidence 99999999999999999882 22344455543
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-16 Score=131.91 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=98.9
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecC-CCCCceeeeEEEEEEeCCC--CCeEEEEEEecCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNLNPEWNEEFGLVVKDPE--YQALELQVYDWEKVG 337 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~~~~~ 337 (538)
-|+|+|.+|.+|+ |++|||+++.+.+.+ ++|++++ ++.||.|||.|.|++..+. +..|.++|||+++++
T Consensus 22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k---~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~ 93 (144)
T 3l9b_A 22 ALIVHLKTVSELR-----GRADRIAKVTFRGQS---FYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVF 93 (144)
T ss_dssp EEEEEEEEEESCC-----SCEEEEEEEEETTEE---EECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTS
T ss_pred EEEEEEEEecCCC-----CCCCCeEEEEEeccc---eeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcccc
Confidence 6899999999998 578999999996544 5999998 6999999999999997643 679999999999999
Q ss_pred CCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 338 HHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 338 ~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
+|++||++.++|+++..++......+|.. .++....++|.+++.|.|.
T Consensus 94 ~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD------~n~~~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 94 SNKLIGTFRMVLQKVVEENRVEVSDTLID------DNNAIIKTSLSMEVRYQAA 141 (144)
T ss_dssp CCEEEEEEEEESHHHHHHSEEEEEEEEEC------TTSCEEEEEEEEEEEEEET
T ss_pred CCCEEEEEEEEhHHhccCCeEEEeecccC------CCCCccccEEEEEEEecCC
Confidence 99999999999999998776666655532 1224456899999999985
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-16 Score=164.83 Aligned_cols=121 Identities=28% Similarity=0.416 Sum_probs=103.2
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCC
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEK 335 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~ 335 (538)
....|.|+|+|++|++|+.+|..|.+||||+++++++. ++|+++++|+||.|||+|.|.+..+..+.|+|+|||+|.
T Consensus 383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~---~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~ 459 (510)
T 3jzy_A 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQS---YTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ 459 (510)
T ss_dssp ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCS
T ss_pred CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCee---ccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC
Confidence 34679999999999999999999999999999997643 599999999999999999999987777889999999999
Q ss_pred CCCCCccEEEEEeCccCCCCCC----ceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 336 VGHHDKMGMNVIPLKDITPEEP----REMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
+++|++||++.+++.++..+.. ...|+++. +...|+|++.+.+.
T Consensus 460 ~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~----------~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 460 FSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH----------EVPTGEVWVRFDLQ 507 (510)
T ss_dssp SSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB----------SSSSCEEEEEEEEE
T ss_pred CCCCCceEEEEEEHHHhccccCCCCceeeeecCC----------CCCCceEEEEEEEE
Confidence 9999999999999999976533 45677652 34679999888765
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=148.59 Aligned_cols=134 Identities=20% Similarity=0.327 Sum_probs=109.5
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEE---cCeeE
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILF---RGEEK 449 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~---~~~~~ 449 (538)
.+..|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++ +...+
T Consensus 3 ~~~~G~l~~~l~y~~~-------------------------~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~ 57 (296)
T 1dqv_A 3 GAPCGRISFALRYLYG-------------------------SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKF 57 (296)
T ss_dssp CCSSCEEEEEEECCSS-------------------------SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCE
T ss_pred CCeeeEEEEEEEEeCC-------------------------CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeE
Confidence 4678999999999754 78999999999999863 57999999999 45678
Q ss_pred EeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEe-cchhcc-cceeceEEEcCCC--
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGIN-LADVVN-NKRINEKYHLIDS-- 524 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~-L~~l~~-~~~~~~~~~L~~~-- 524 (538)
+|++++++.||+|||.|.|.+.... ....|.|+|||++. +++|++||++.++ +.++.. ......|++|...
T Consensus 58 kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~----~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~ 133 (296)
T 1dqv_A 58 QTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR----FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGS 133 (296)
T ss_dssp ECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS----SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSS
T ss_pred eCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCC----CCCCceEEEEEeccccccccCCccceeeeccccccc
Confidence 9999999999999999999986421 13589999999985 6789999999996 555554 2345789999753
Q ss_pred ---CCeEEEEEEEEEeC
Q 046405 525 ---KNGRIQIELQWRAS 538 (538)
Q Consensus 525 ---~~G~i~l~~~wkp~ 538 (538)
..|+|.+.+.+.|.
T Consensus 134 ~~~~~G~i~vsl~y~~~ 150 (296)
T 1dqv_A 134 EKADLGELNFSLCYLPT 150 (296)
T ss_dssp CCSCCCEEEEEEEEETT
T ss_pred cccccceEEEEEEeccc
Confidence 25999999998763
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=127.14 Aligned_cols=116 Identities=19% Similarity=0.416 Sum_probs=101.9
Q ss_pred ceEEEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeeccc-CCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCC
Q 046405 417 GGLLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIK-KNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLH 494 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~ 494 (538)
--.|+|.|.+|.+|++ .+|||+++++.+.++||++++ .+.||+|||.|+|++..+. ..+.|.|.|+|+++ +.
T Consensus 20 ~msL~V~l~~a~~Lpg--~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~----v~ 93 (144)
T 3l9b_A 20 HMALIVHLKTVSELRG--RADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK----VF 93 (144)
T ss_dssp CEEEEEEEEEEESCCS--CEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT----TS
T ss_pred cEEEEEEEEEecCCCC--CCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc----cc
Confidence 3478999999999995 699999999999999999998 5999999999999998643 34689999999986 67
Q ss_pred CCCccEEEEEecchhcccceeceEEEcCCCC----CeEEEEEEEEEeC
Q 046405 495 PKETLGYIGINLADVVNNKRINEKYHLIDSK----NGRIQIELQWRAS 538 (538)
Q Consensus 495 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~----~G~i~l~~~wkp~ 538 (538)
++.+||++.++|.++...+.+.-+-+|.+.+ .+.|.+++.|.|+
T Consensus 94 ~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 94 SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAA 141 (144)
T ss_dssp CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEET
T ss_pred CCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCC
Confidence 8999999999999999888777777887764 4899999999985
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-15 Score=134.53 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=75.5
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecC-CCCCceeeeEEEEEEeCCCCCeEEEEEEecCC
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNLNPEWNEEFGLVVKDPEYQALELQVYDWEK 335 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~ 335 (538)
.+.|.|+|+|++|+++. ..|.+||||+++ . +. .+|++++ ++.||.|||+|.|.+.+. ...|.|+|||+|
T Consensus 11 g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~-~~---~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d- 80 (167)
T 2cjs_A 11 GILSLLCVGVKKAKFDG---AQEKFNTYVTLK-V-QN---VESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG- 80 (167)
T ss_dssp SCCCEEEEEEEEEECSS---CGGGCEEEEEEE-E-TT---EEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-
T ss_pred CceEEEEEEEEEEECCC---CCCCCCeEEEEE-e-cc---eEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-
Confidence 35789999999999884 257899999999 2 32 3666665 699999999999999865 568999999999
Q ss_pred CCCCCccEEEEEeCccCCCC
Q 046405 336 VGHHDKMGMNVIPLKDITPE 355 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~ 355 (538)
+++|++||++.++|.++...
T Consensus 81 ~~~dd~iG~~~i~L~~l~~~ 100 (167)
T 2cjs_A 81 LIWDTMVGTVWIPLRTIRQS 100 (167)
T ss_dssp SSCCEEEEEEEEEGGGSCBC
T ss_pred CCCCceEEEEEEEHHHhccc
Confidence 88999999999999998754
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-15 Score=161.80 Aligned_cols=109 Identities=26% Similarity=0.443 Sum_probs=98.9
Q ss_pred CCceeEEEEEEEEecCCCc---CCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEe
Q 046405 256 QKPVGILNVKVLRAMKLKK---KDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYD 332 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~---~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d 332 (538)
..+.|.|+|+|++|++|+. +|..|++||||++++++....++||+++++++||+|||+|.|.+..+..+.|+|+|||
T Consensus 14 ~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D 93 (749)
T 1cjy_A 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMD 93 (749)
T ss_dssp CCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEE
T ss_pred CCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEE
Confidence 3578999999999999998 7888999999999998755556799999999999999999999987667899999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+|.++ |++||++.++|.++..+.....|++|.
T Consensus 94 ~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 94 ANYVM-DETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp CCSSS-CEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred CCCCC-CceeEEEEEEHHHcCCCCceEEEEecC
Confidence 99998 999999999999999888788899874
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=123.74 Aligned_cols=88 Identities=24% Similarity=0.300 Sum_probs=74.3
Q ss_pred CceEEEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeeccc-CCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCC
Q 046405 416 GGGLLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIK-KNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLH 494 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
..+.|.|+|++|++++..+.+||||+++ ++..+|++++ ++.||+|||.|.|.+.+. ...|.|+|||++ ++
T Consensus 3 ~~~~L~V~V~~A~~l~~~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d-----~~ 73 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGAQEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKG-----LI 73 (131)
T ss_dssp CCEEEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC--SSEEEEEEEECC-----SS
T ss_pred cceEEEEEEEEeECCCCCCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC--CCeEEEEEEECC-----CC
Confidence 4689999999999997677899999999 3344565554 799999999999999863 467999999997 35
Q ss_pred CCCccEEEEEecchhccc
Q 046405 495 PKETLGYIGINLADVVNN 512 (538)
Q Consensus 495 ~d~~lG~~~i~L~~l~~~ 512 (538)
+|++||++.|+|+++...
T Consensus 74 ~dd~iG~~~i~l~~l~~~ 91 (131)
T 2cjt_A 74 WDTMVGTVWIPLRTIRQS 91 (131)
T ss_dssp CEEEEEEEEEEGGGSCBC
T ss_pred CCCeEEEEEEEHHHhhhc
Confidence 799999999999998754
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=152.60 Aligned_cols=116 Identities=21% Similarity=0.417 Sum_probs=102.2
Q ss_pred CceEEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 416 GGGLLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
..|.|.|+|++|++|+. .+.+||||++++++.+++|++++++.||+|||.|.|.+... ....|.|+|||++.
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~-~~~~l~~~v~d~d~---- 459 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL-YQDVLCLTLFDRDQ---- 459 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCT-TTCEEEEEEEECCS----
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCC----
Confidence 56899999999999976 36799999999999999999999999999999999999764 55789999999985
Q ss_pred CCCCCccEEEEEecchhcccce----eceEEEcCCCCCeEEEEEEEEE
Q 046405 493 LHPKETLGYIGINLADVVNNKR----INEKYHLIDSKNGRIQIELQWR 536 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~~~~----~~~~~~L~~~~~G~i~l~~~wk 536 (538)
+++|++||++.++|+++..+.. ...|++|.+..+|+|++++..+
T Consensus 460 ~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 460 FSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ 507 (510)
T ss_dssp SSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred CCCCCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence 5789999999999999987543 7899999988899999888764
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.52 E-value=7.8e-14 Score=150.70 Aligned_cols=124 Identities=22% Similarity=0.388 Sum_probs=100.7
Q ss_pred ceeEEEEEEEEecCCCcCCC--CCCCCcEEEEEEcCC--CCCceeeeecCCC-CCceeeeEEEEEEeCCCCCeEEEEEEe
Q 046405 258 PVGILNVKVLRAMKLKKKDL--IGASDPYVKLKLTDD--KLPSKKTTVKHRN-LNPEWNEEFGLVVKDPEYQALELQVYD 332 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~--~g~~dpyv~v~~~~~--~~~~~~T~v~~~t-~nP~Wne~f~f~v~~~~~~~L~v~v~d 332 (538)
..+.|+|+|++|++|+..+. .|.+||||++.+.+. ...++||++++++ .||+|||+|.|.+..++...|+|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 57899999999999998874 689999999999553 2235699999987 999999999999987766789999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
+|.+++|++||++.+||..+..+. .+++|.... ......|+|.+.+.|.
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~-----g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKN-----GDQHPSATLFVKISIQ 623 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTT-----SCEEEEEEEEEEEEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCC-----cCCCCceEEEEEEEEE
Confidence 999999999999999999998752 466664311 0122467888888774
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.9e-14 Score=125.71 Aligned_cols=88 Identities=23% Similarity=0.284 Sum_probs=74.7
Q ss_pred CceEEEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeeccc-CCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCC
Q 046405 416 GGGLLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIK-KNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLH 494 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
..+.|.|+|++|++++..+.+||||+++ ++..||++++ ++.||+|||.|.|.+.+. ...|.|+|||++ ++
T Consensus 12 ~~~~L~V~V~~A~~l~~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d-----~~ 82 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDGAQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKG-----LI 82 (167)
T ss_dssp CCCEEEEEEEEEECSSCGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT--TSEEEEEEEECC-----SS
T ss_pred ceEEEEEEEEEEECCCCCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC--CCEEEEEEEECC-----CC
Confidence 3679999999999997667899999999 3445676665 699999999999999863 467999999997 35
Q ss_pred CCCccEEEEEecchhccc
Q 046405 495 PKETLGYIGINLADVVNN 512 (538)
Q Consensus 495 ~d~~lG~~~i~L~~l~~~ 512 (538)
+|++||++.|+|+++...
T Consensus 83 ~dd~iG~~~i~L~~l~~~ 100 (167)
T 2cjs_A 83 WDTMVGTVWIPLRTIRQS 100 (167)
T ss_dssp CCEEEEEEEEEGGGSCBC
T ss_pred CCceEEEEEEEHHHhccc
Confidence 799999999999998754
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=143.90 Aligned_cols=108 Identities=22% Similarity=0.286 Sum_probs=91.9
Q ss_pred ceEEEEEEeeeccCCC--CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCC
Q 046405 417 GGLLVVILHEAQDVEG--KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLH 494 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~--~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~ 494 (538)
.|.|+|+|++|++|+. .+.+||||++++++++.||++++++.||+|||.|.|.+...+..+.|.|+|||+|. ++
T Consensus 393 ~~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~----~~ 468 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY----GW 468 (540)
T ss_dssp EEEEEEEEEEEESCCCSSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS----SS
T ss_pred ccEEEEEEEEccCCCcccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC----CC
Confidence 6899999999999986 35799999999999999999999999999999999986532356789999999986 56
Q ss_pred CCCccEEEEEecchhcccceeceEEEcCCCCCeEEEEEEEE
Q 046405 495 PKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQW 535 (538)
Q Consensus 495 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~w 535 (538)
+|++||.+.++|.. +....|++|. .|.|+++++.
T Consensus 469 ~dD~LG~~~~~L~~----g~~~~~~~l~---~G~l~~~~~~ 502 (540)
T 3nsj_A 469 DDDLLGSCDRSPHS----GFHEVTCELN---HGRVKFSYHA 502 (540)
T ss_dssp CCEEEEEEEECCCS----EEEEEEEECS---SSEEEEEEEE
T ss_pred CCCEEEEEEEEeeC----CcEEEEEEcC---CeEEEEEEEE
Confidence 78999999999982 3457899875 6888877664
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-14 Score=149.77 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=22.2
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCC---CCceeeeEEEEEEeCCCCCeEEEEEEec-
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRN---LNPEWNEEFGLVVKDPEYQALELQVYDW- 333 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t---~nP~Wne~f~f~v~~~~~~~L~v~v~d~- 333 (538)
..|.|+|+|++|++|+++| ||||++++++... .||+++++| .||.|||+|.|.+... ...|.++|||+
T Consensus 9 ~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~--~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~ 80 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPKK-----RYYCELCLDDMLY--ARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDS 80 (483)
T ss_dssp EEECC----------------------------------------------------CCEECC-----------------
T ss_pred eccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEE--eeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecC
Confidence 4689999999999999876 9999999986543 489999999 9999999999987543 57899999995
Q ss_pred C---CCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCC-----------------CCCCCccccEEEEEEEEEeec
Q 046405 334 E---KVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPN-----------------DTRNEKSRGQVVVEVLYKPFK 392 (538)
Q Consensus 334 ~---~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~G~l~l~l~~~p~~ 392 (538)
| ..++|++||++.+++.++..+...+.|++|....... ..+.....|.|++.+.|.+..
T Consensus 81 d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~ 159 (483)
T 3bxj_A 81 DKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS 159 (483)
T ss_dssp --------------------------CCEECC--------------------------------------CEEEEEECC
T ss_pred CccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeee
Confidence 4 3678999999999999999887888898885322100 001123569999999998753
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=141.84 Aligned_cols=108 Identities=16% Similarity=0.354 Sum_probs=93.7
Q ss_pred CceEEEEEEeeeccCCC---C---CCCCCeEEEEEcC---eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEc
Q 046405 416 GGGLLVVILHEAQDVEG---K---YHTNPSARILFRG---EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVIST 486 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~---~---~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
..+.|+|+|++|++|+. . +.+||||++++++ .++||++++++.||+|||.|+|.+... ....|.|+|||+
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~-~~~~L~~~V~D~ 94 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDA 94 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCBCEEEEEEC
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCC-CCCEEEEEEEEC
Confidence 47999999999999987 2 6899999999984 578999999999999999999999874 567899999999
Q ss_pred cCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEEEE
Q 046405 487 SSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQI 531 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l 531 (538)
+. ++ |++||++.++|.++..+....+||+|... +++.+
T Consensus 95 D~----~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~--~e~~l 132 (749)
T 1cjy_A 95 NY----VM-DETLGTATFTVSSMKVGEKKEVPFIFNQV--TEMVL 132 (749)
T ss_dssp CS----SS-CEEEEEECCBSTTSCTTCCCCEEEEETTT--EEEEE
T ss_pred CC----CC-CceeEEEEEEHHHcCCCCceEEEEecCCC--ceEee
Confidence 85 56 99999999999999877777899999753 44443
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-14 Score=148.31 Aligned_cols=118 Identities=12% Similarity=0.184 Sum_probs=21.0
Q ss_pred CceEEEEEEeeeccCCCCCCCCCeEEEEEcCe-eEEeecccCC---CCCcCcceEEEEecCCCCCCeEEEEEEEccCCCC
Q 046405 416 GGGLLVVILHEAQDVEGKYHTNPSARILFRGE-EKKTKRIKKN---RDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMG 491 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~-~~kT~v~~~t---~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g 491 (538)
..+.|+|+|++|++|+.+. ||||++++++. ..||+++++| .||+|||.|+|.+... ...|.++|||+...++
T Consensus 9 ~~~~L~V~VieAk~L~~~d--dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~--~~~L~v~V~d~~d~~~ 84 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPKK--RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA--VRALRLHLYRDSDKKR 84 (483)
T ss_dssp EEECC-----------------------------------------------CCEECC----------------------
T ss_pred eccEEEEEEEEcCCcCCCC--CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC--ccEEEEEEEecCCccc
Confidence 4688999999999999864 99999999886 4599999999 9999999999997542 4789999999521001
Q ss_pred CCCCCCccEEEEEecchhcccceeceEEEcCCC---------------------------CCeEEEEEEEEEe
Q 046405 492 LLHPKETLGYIGINLADVVNNKRINEKYHLIDS---------------------------KNGRIQIELQWRA 537 (538)
Q Consensus 492 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~---------------------------~~G~i~l~~~wkp 537 (538)
.+++|++||++.|+++++..+...++||+|.+. ..|.|+|+++|.+
T Consensus 85 ~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~ 157 (483)
T 3bxj_A 85 KKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQT 157 (483)
T ss_dssp ----------------------CCEECC--------------------------------------CEEEEEE
T ss_pred cCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeee
Confidence 146799999999999999877777899999532 1489999999876
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.33 E-value=8.3e-12 Score=134.89 Aligned_cols=114 Identities=18% Similarity=0.288 Sum_probs=95.1
Q ss_pred CCceEEEEEEeeeccCCCC-----CCCCCeEEEEEcC-----eeEEeecccCC-CCCcCcceEEEEecCCCCCCeEEEEE
Q 046405 415 EGGGLLVVILHEAQDVEGK-----YHTNPSARILFRG-----EEKKTKRIKKN-RDPRWEEEFQFTLEEPPTDDKLHVEV 483 (538)
Q Consensus 415 ~~~g~L~v~v~~a~~L~~~-----~~~dpyv~v~~~~-----~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~l~v~V 483 (538)
...+.|+|+|++|++|+.. +.+||||++.+.+ .++||++++++ .||+|||.|+|.+..+ ....|.|+|
T Consensus 494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~-el~~L~~~V 572 (624)
T 1djx_A 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMV 572 (624)
T ss_dssp CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCG-GGCEEEEEE
T ss_pred ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecC-CCCEEEEEE
Confidence 3578999999999999863 4789999999955 46799999997 9999999999999864 446899999
Q ss_pred EEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEEE
Q 046405 484 ISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQWR 536 (538)
Q Consensus 484 ~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~wk 536 (538)
||++. +++|++||++.++|.++..+ .+|++|.+.. .+.|.++++++
T Consensus 573 ~D~D~----~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 573 EDYDS----SSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp EECCS----SSCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EEcCC----CCCCceeEEEEEEHHHcCCC---cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence 99985 57899999999999998664 3689997653 37777877764
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=136.33 Aligned_cols=107 Identities=34% Similarity=0.528 Sum_probs=92.3
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCCC-CCeEEEEEEecCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDPE-YQALELQVYDWEK 335 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~~~ 335 (538)
.+.|.|++.+|++|..+|..|.+||||++++.+. ...+++|+++++++||.|||+|.|.+.... ...|.++|||+|.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 5789999999999999999999999999999433 234579999999999999999999987543 4569999999999
Q ss_pred CCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 336 VGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
.++|++||++.+++.++.... ...|+.+..
T Consensus 251 ~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls 280 (674)
T 3pfq_A 251 TSRNDFMGSLSFGISELQKAG-VDGWFKLLS 280 (674)
T ss_dssp SSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred ccccccccccccchhhhccCC-cccceeecc
Confidence 999999999999999998764 467877643
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5.3e-11 Score=130.99 Aligned_cols=104 Identities=21% Similarity=0.481 Sum_probs=89.5
Q ss_pred ceEEEEEEeeeccCCC---CCCCCCeEEEEE-----cCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccC
Q 046405 417 GGLLVVILHEAQDVEG---KYHTNPSARILF-----RGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSS 488 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~---~~~~dpyv~v~~-----~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~ 488 (538)
.+.|.|++.+|++|.. .+.+||||++++ ...+++|++++++.||+|||.|.|.+........|.++|||++.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 5789999999999976 368999999999 34567999999999999999999999865445679999999985
Q ss_pred CCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC
Q 046405 489 RMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525 (538)
Q Consensus 489 ~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 525 (538)
+++|++||++.++++++.... .++||.|....
T Consensus 251 ----~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~ 282 (674)
T 3pfq_A 251 ----TSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE 282 (674)
T ss_dssp ----SSCCEECCBCCCBTTHHHHCC-EEEEEECBCTT
T ss_pred ----ccccccccccccchhhhccCC-cccceeecccc
Confidence 678999999999999998754 48999997653
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-10 Score=128.10 Aligned_cols=118 Identities=17% Similarity=0.272 Sum_probs=90.9
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC---CCCceeeeecCC-CCCceeee-EEEEE-EeCCCCCeEEEEEEe
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD---KLPSKKTTVKHR-NLNPEWNE-EFGLV-VKDPEYQALELQVYD 332 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~---~~~~~~T~v~~~-t~nP~Wne-~f~f~-v~~~~~~~L~v~v~d 332 (538)
...|.|+|++|++|+.. .+||||+|.+.+. ...+++|+++++ +.||+||| +|.|. +..++...|+|+|||
T Consensus 724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D 799 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE 799 (885)
T ss_dssp CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence 35899999999999853 5899999999652 122358998875 59999999 69998 766666789999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeec
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFK 392 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (538)
+| |++||++.+||..|..+- .+++|.... ...-..|+|.+.+.+....
T Consensus 800 ~d----ddfiG~~~lpL~~L~~Gy---R~vpL~~~~-----g~~l~~atLfv~i~~~~~~ 847 (885)
T 3ohm_B 800 EG----GKFVGHRILPVSAIRSGY---HYVCLRNEA-----NQPLCLPALLIYTEASDYI 847 (885)
T ss_dssp TT----TEEEEEEEEETTTCCCEE---EEEEEECTT-----SCEEEEEEEEEEEEEEECC
T ss_pred CC----ccEEeeEEEEHHHcCCCc---eEEEecCCC-----CCccCceEEEEEEEEEecC
Confidence 86 889999999999998762 245553211 1123578999999988653
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-10 Score=126.38 Aligned_cols=116 Identities=19% Similarity=0.280 Sum_probs=87.9
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC---CCCceeee-ecC-CCCCceeee-EEEE-EEeCCCCCeEEEEE
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD---KLPSKKTT-VKH-RNLNPEWNE-EFGL-VVKDPEYQALELQV 330 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~---~~~~~~T~-v~~-~t~nP~Wne-~f~f-~v~~~~~~~L~v~v 330 (538)
..|.|.|+|++|++|+. +.+||||+|.+.+. ...++||+ +++ ++.||+||| +|.| .+..++...|+|+|
T Consensus 676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V 751 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 751 (799)
T ss_dssp TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence 36899999999999985 46899999999542 22356898 776 569999999 6999 88766667899999
Q ss_pred EecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 331 YDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 331 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
||+| +++||++.+||..|..+ ..+++|.... ...-..+.|.+.+.+.
T Consensus 752 ~D~d----~d~iG~~~ipl~~L~~G---~r~v~L~~~~-----g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 752 MEEG----NKFLGHRIIPINALNSG---YHHLCLHSES-----NMPLTMPALFIFLEMK 798 (799)
T ss_dssp EETT----TEEEEEEEEEGGGBCCE---EEEEEEECTT-----CCEEEEEEEEEEEEEE
T ss_pred EEeC----CCccceEeeehhhcCCC---cEEEeccCCC-----CCCCCceEEEEEEEEE
Confidence 9986 78999999999999865 2355553211 0122457777777663
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-10 Score=125.15 Aligned_cols=119 Identities=20% Similarity=0.336 Sum_probs=91.0
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCC----CceeeeecCC-CCCceeeeE-EEEE-EeCCCCCeEEEEEE
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL----PSKKTTVKHR-NLNPEWNEE-FGLV-VKDPEYQALELQVY 331 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~----~~~~T~v~~~-t~nP~Wne~-f~f~-v~~~~~~~L~v~v~ 331 (538)
.+.|+|+|++|++|+.+ .+||||+|.+.+... .+++|+++++ +.||+|||+ |.|. +..++...|+|+||
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~ 724 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS 724 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence 47899999999999853 589999999965321 3458998875 699999998 9998 77666678999999
Q ss_pred ecCCCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEeecC
Q 046405 332 DWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFKG 393 (538)
Q Consensus 332 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~~ 393 (538)
|++ |++||++.+||..|..+- .+++|.... ...-..++|.+.+.+.....
T Consensus 725 D~d----ddfiG~~~ipL~~L~~Gy---R~vpL~~~~-----g~~~~~atLfv~i~~~~~~~ 774 (816)
T 3qr0_A 725 EEN----GKFIGHRVMPLDGIKPGY---RHVPLRNES-----NRPLGLASVFAHIVAKDYVS 774 (816)
T ss_dssp ETT----SCEEEEEEEESTTCCCEE---EEEEEECTT-----SCEEEEEEEEEEEEEEECCC
T ss_pred ecC----CCeeeEEEEEHHHcCCcc---eEEEEeCCC-----CCCCCceEEEEEEEEEecCc
Confidence 985 789999999999998763 345553311 11234478888888876533
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.1e-09 Score=86.94 Aligned_cols=114 Identities=16% Similarity=0.244 Sum_probs=85.5
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCC-Cceee-eecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCC
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL-PSKKT-TVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEK 335 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~-~~~~T-~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~ 335 (538)
..+-|+|.+.++.--.-.......||||.+.+..... ...+| ..++.|..|.|||+|.-.+++ ...|.+.|++...
T Consensus 4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~ 81 (126)
T 1yrk_A 4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE 81 (126)
T ss_dssp CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT
T ss_pred cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC
Confidence 3467888887665322222223579999999964321 12355 777889999999999999876 5789999997653
Q ss_pred CCCCCccEEEEEeCccCC-----CCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 336 VGHHDKMGMNVIPLKDIT-----PEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
++++.|.+++++|. .+...+.|++| ++.|+|++.+.|+
T Consensus 82 ----~fvAn~tV~~edL~~~c~~~~g~~e~WvdL------------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 ----EPVSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMSVQYF 124 (126)
T ss_dssp ----EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEE
T ss_pred ----CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEe
Confidence 89999999999998 34456788886 4589999999886
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=98.95 E-value=5.2e-09 Score=115.25 Aligned_cols=108 Identities=17% Similarity=0.209 Sum_probs=86.7
Q ss_pred CceEEEEEEeeeccCCCCCCCCCeEEEEEcC-------eeEEeecccC-CCCCcCcce-EEEE-ecCCCCCCeEEEEEEE
Q 046405 416 GGGLLVVILHEAQDVEGKYHTNPSARILFRG-------EEKKTKRIKK-NRDPRWEEE-FQFT-LEEPPTDDKLHVEVIS 485 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~-------~~~kT~v~~~-t~nP~wne~-f~f~-v~~~~~~~~l~v~V~d 485 (538)
..+.|.|+|++|++|+. ..+||||+|.+.+ +++||+++++ +.||+|||. |+|. +..+ .-..|.++|+|
T Consensus 648 ~~~~L~V~Visaq~L~~-~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~p-ela~Lrf~V~D 725 (816)
T 3qr0_A 648 VAGTIEIKIISAQFLSD-KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLP-DLAVVRIIVSE 725 (816)
T ss_dssp CCEEEEEEEEEEECCCS-SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCG-GGCEEEEEEEE
T ss_pred cceEEEEEEEEcccCCC-CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCC-CccEEEEEEEe
Confidence 35789999999999986 4799999999975 4569999886 699999998 9998 7653 44689999999
Q ss_pred ccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEEE
Q 046405 486 TSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQWR 536 (538)
Q Consensus 486 ~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~wk 536 (538)
++ +++||++.++|+.+..+ -++.+|.+.. .+.|.+.+..+
T Consensus 726 ~d--------ddfiG~~~ipL~~L~~G---yR~vpL~~~~g~~~~~atLfv~i~~~ 770 (816)
T 3qr0_A 726 EN--------GKFIGHRVMPLDGIKPG---YRHVPLRNESNRPLGLASVFAHIVAK 770 (816)
T ss_dssp TT--------SCEEEEEEEESTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred cC--------CCeeeEEEEEHHHcCCc---ceEEEEeCCCCCCCCceEEEEEEEEE
Confidence 74 58999999999998654 3578887653 26666666544
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.94 E-value=4.8e-09 Score=116.11 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=86.0
Q ss_pred CceEEEEEEeeeccCCCCCCCCCeEEEEEcC------eeEEee-cccC-CCCCcCcc-eEEE-EecCCCCCCeEEEEEEE
Q 046405 416 GGGLLVVILHEAQDVEGKYHTNPSARILFRG------EEKKTK-RIKK-NRDPRWEE-EFQF-TLEEPPTDDKLHVEVIS 485 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~------~~~kT~-v~~~-t~nP~wne-~f~f-~v~~~~~~~~l~v~V~d 485 (538)
..+.|.|+|++|++|+. +.+||||+|.+.+ +++||+ ++++ +.||+||| .|+| .+..+ .-..|.|+|+|
T Consensus 676 ~~~~L~V~Visa~~L~~-~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~-el~~Lr~~V~D 753 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE-RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP-ELASLRVAVME 753 (799)
T ss_dssp TCEEEEEEEEEEESCCS-SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG-GGCEEEEEEEE
T ss_pred eeeeEEEEEEeccccCc-cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccC-CccEEEEEEEE
Confidence 46899999999999986 5799999999954 256999 7765 69999999 6999 78653 44589999999
Q ss_pred ccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEEE
Q 046405 486 TSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQWR 536 (538)
Q Consensus 486 ~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~wk 536 (538)
++ +++||++.++|+.+..+ .++++|.+.. .+.+.+.++++
T Consensus 754 ~d--------~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 754 EG--------NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp TT--------TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred eC--------CCccceEeeehhhcCCC---cEEEeccCCCCCCCCceEEEEEEEEE
Confidence 85 58999999999998653 3678887643 26666776654
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=5e-09 Score=87.56 Aligned_cols=115 Identities=15% Similarity=0.226 Sum_probs=87.8
Q ss_pred CceeEEEEEEEEecCCCcCC-CCCCCCcEEEEEEcCCCC-Cceee-eecCCCCCceeeeEEEEEEeCCCCCeEEEEEEec
Q 046405 257 KPVGILNVKVLRAMKLKKKD-LIGASDPYVKLKLTDDKL-PSKKT-TVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDW 333 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d-~~g~~dpyv~v~~~~~~~-~~~~T-~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~ 333 (538)
...+-|+|.+.++.--+-.. .....||||.|.+..... ...+| ..++.|..|.|||+|.-.+++ ...|.|.|++.
T Consensus 7 ~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~ 84 (138)
T 2enj_A 7 GMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGK 84 (138)
T ss_dssp SCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECS
T ss_pred ccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcC
Confidence 34567888887776543222 123579999999964321 23577 777889999999999998876 57899999965
Q ss_pred CCCCCCCccEEEEEeCccCC-----CCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 334 EKVGHHDKMGMNVIPLKDIT-----PEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
.. ++++.|.+++++|. .+...+.|++| ++.|+|++.+.|.
T Consensus 85 a~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdL------------eP~Gkl~v~i~~~ 129 (138)
T 2enj_A 85 NV----DLISETTVELYSLAERCRKNNGKTEIWLEL------------KPQGRMLMNARYF 129 (138)
T ss_dssp SC----SCCEEEEEESHHHHHHHHHTTTCEEEEEEC------------BSSCEEEEEEEEC
T ss_pred CC----CeeeEEEEEHHHHHhhhccCCCceEEEEec------------ccCcEEEEEEEEE
Confidence 43 89999999999998 44566889987 4589999999996
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=4e-09 Score=116.75 Aligned_cols=107 Identities=15% Similarity=0.195 Sum_probs=86.3
Q ss_pred ceEEEEEEeeeccCCCCCCCCCeEEEEEcC------eeEEeecccC-CCCCcCcc-eEEEE-ecCCCCCCeEEEEEEEcc
Q 046405 417 GGLLVVILHEAQDVEGKYHTNPSARILFRG------EEKKTKRIKK-NRDPRWEE-EFQFT-LEEPPTDDKLHVEVISTS 487 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~------~~~kT~v~~~-t~nP~wne-~f~f~-v~~~~~~~~l~v~V~d~~ 487 (538)
...|.|+|++|++|+.. .+||||+|.+.+ .++||+++++ +.||+||| .|+|. +..+ ....|.|+|||++
T Consensus 724 ~~~L~V~Visaq~L~~~-~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~p-ela~Lrf~V~D~d 801 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR-KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLP-TLASLRIAAFEEG 801 (885)
T ss_dssp CEEEEEEEEEEESCCSS-CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCG-GGCEEEEEEEETT
T ss_pred ceEEEEEEEEeccCccc-CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcC-CcCEEEEEEEcCC
Confidence 45899999999999874 799999999975 2469999986 59999999 69998 6553 4568999999985
Q ss_pred CCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEEE
Q 046405 488 SRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQWR 536 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~wk 536 (538)
+++||++.++|+.|..+ -++.+|.+.. .|.|.+.+..+
T Consensus 802 --------ddfiG~~~lpL~~L~~G---yR~vpL~~~~g~~l~~atLfv~i~~~ 844 (885)
T 3ohm_B 802 --------GKFVGHRILPVSAIRSG---YHYVCLRNEANQPLCLPALLIYTEAS 844 (885)
T ss_dssp --------TEEEEEEEEETTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred --------ccEEeeEEEEHHHcCCC---ceEEEecCCCCCccCceEEEEEEEEE
Confidence 58999999999998654 3567887653 37788877765
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.89 E-value=4.8e-08 Score=80.55 Aligned_cols=108 Identities=11% Similarity=0.226 Sum_probs=85.2
Q ss_pred CceEEEEEEeeecc--CCC-CCCCCCeEEEEEcCee----EEe-ecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEcc
Q 046405 416 GGGLLVVILHEAQD--VEG-KYHTNPSARILFRGEE----KKT-KRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTS 487 (538)
Q Consensus 416 ~~g~L~v~v~~a~~--L~~-~~~~dpyv~v~~~~~~----~kT-~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~ 487 (538)
....|+|.+.++.. |.. ....||||.+.+.... .+| ..+++|..|+||+.|.-.+.+. ..|.+.|+++.
T Consensus 4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G---r~l~i~Vfh~a 80 (126)
T 1yrk_A 4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG---RVIQIVLMRAA 80 (126)
T ss_dssp CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT---CEEEEEEEEET
T ss_pred cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC---EEEEEEEEcCC
Confidence 35678888766653 332 2368999999986543 255 7778899999999999999864 78999999653
Q ss_pred CCCCCCCCCCccEEEEEecchhccc-----ceeceEEEcCCCCCeEEEEEEEEE
Q 046405 488 SRMGLLHPKETLGYIGINLADVVNN-----KRINEKYHLIDSKNGRIQIELQWR 536 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i~L~~l~~~-----~~~~~~~~L~~~~~G~i~l~~~wk 536 (538)
-++++.++|++.+|+++ +..+-|.+|+. +|+|++.++|.
T Consensus 81 --------~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP--~Gkl~~~i~~~ 124 (126)
T 1yrk_A 81 --------EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMSVQYF 124 (126)
T ss_dssp --------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--SCEEEEEEEEE
T ss_pred --------CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEe
Confidence 28999999999999953 45688999984 89999999985
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.1e-08 Score=82.05 Aligned_cols=108 Identities=13% Similarity=0.188 Sum_probs=85.9
Q ss_pred CceEEEEEEeeeccCC--C--CCCCCCeEEEEEcCee----EEe-ecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEc
Q 046405 416 GGGLLVVILHEAQDVE--G--KYHTNPSARILFRGEE----KKT-KRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVIST 486 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~--~--~~~~dpyv~v~~~~~~----~kT-~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
..+.|+|.+.++.--+ . ....||||.|.+.... .+| ..+++|..|+||+.|.-.+.+. ..|.|.|+++
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G---r~l~i~Vfh~ 84 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG---RVMQIIVKGK 84 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS---CEEEEEEECS
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC---eEEEEEEEcC
Confidence 4677888887766432 1 2368999999996542 366 6677899999999999999864 7899999954
Q ss_pred cCCCCCCCCCCccEEEEEecchhccc-----ceeceEEEcCCCCCeEEEEEEEEE
Q 046405 487 SSRMGLLHPKETLGYIGINLADVVNN-----KRINEKYHLIDSKNGRIQIELQWR 536 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l~~~-----~~~~~~~~L~~~~~G~i~l~~~wk 536 (538)
. -+++..++|++.+|+++ +..+-|.+|+. +|+|++.++|.
T Consensus 85 a--------~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--~Gkl~v~i~~~ 129 (138)
T 2enj_A 85 N--------VDLISETTVELYSLAERCRKNNGKTEIWLELKP--QGRMLMNARYF 129 (138)
T ss_dssp S--------CSCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--SCEEEEEEEEC
T ss_pred C--------CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEE
Confidence 3 28999999999999954 35688999984 89999999984
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=92.20 E-value=1.5 Score=49.51 Aligned_cols=93 Identities=23% Similarity=0.225 Sum_probs=62.3
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCCCc-eeeeecCCCCCceeeeEEEEEEe---CCCCCeEEEEEEe
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLPS-KKTTVKHRNLNPEWNEEFGLVVK---DPEYQALELQVYD 332 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~---~~~~~~L~v~v~d 332 (538)
...++|+|..+.++.... ....+-||.+.+ |++.... .+|+. ....+|.|||...|.+. -|....|.++||+
T Consensus 354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~-~~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~ 431 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQR-VPCSNPRWNEWLNYDIYIPDLPRAARLCLSICS 431 (1091)
T ss_dssp CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCC-CCTTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccc-cCCCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence 458899999999886432 234678988887 4444322 23333 34567889999999875 2447899999998
Q ss_pred cCCC----CCCCccEEEEEeCccCC
Q 046405 333 WEKV----GHHDKMGMNVIPLKDIT 353 (538)
Q Consensus 333 ~~~~----~~d~~lG~~~i~l~~l~ 353 (538)
.... ..+..||.+.++|-+-.
T Consensus 432 ~~~~~~~~~~~~~lg~~n~~lfd~~ 456 (1091)
T 3hhm_A 432 VKGRKGAKEEHCPLAWGNINLFDYT 456 (1091)
T ss_dssp CCCCC-------CCEEEEEESBCTT
T ss_pred ecCccCcccccceeEEeeeeeEccC
Confidence 6542 12457888888887654
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=90.42 E-value=3.2 Score=35.60 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=79.9
Q ss_pred CceEEEEEEeeeccCCC-----CCCCCCeEEEEEc---CeeEEeecccCCCCCcCcceEEEEecCCC------CCCeEEE
Q 046405 416 GGGLLVVILHEAQDVEG-----KYHTNPSARILFR---GEEKKTKRIKKNRDPRWEEEFQFTLEEPP------TDDKLHV 481 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~-----~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~------~~~~l~v 481 (538)
..+.+.+.|.++. +.+ .+..+|+.-+++. -+.+-|.+++ ..+|.||-+-.|.+.... ....+.+
T Consensus 16 gEnlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l 93 (156)
T 2yrb_A 16 GENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL 93 (156)
T ss_dssp SCEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred CCcEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence 4678999998886 322 2345675555553 3445666555 899999999999886421 1237889
Q ss_pred EEEEccCCCCCCCCCCccEEEEEecchhcccc-eeceEEEcCCCC-----CeEEEEEEEEEe
Q 046405 482 EVISTSSRMGLLHPKETLGYIGINLADVVNNK-RINEKYHLIDSK-----NGRIQIELQWRA 537 (538)
Q Consensus 482 ~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~-----~G~i~l~~~wkp 537 (538)
++..... ..-..||.+.|+|.++++.. ++...-+|.+.. -|.++..+.++.
T Consensus 94 ELhqa~g-----~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 94 EVHQAYS-----TEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEECS-----SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEEE
T ss_pred EEEEeeC-----CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEec
Confidence 9887642 23468999999999999654 466666776542 388998888875
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=90.36 E-value=1.8 Score=48.45 Aligned_cols=92 Identities=12% Similarity=0.172 Sum_probs=60.9
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEE--cCCCCC-ceeeeecCCCCCceeeeEEEEEEe---CCCCCeEEEEEEe
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKL--TDDKLP-SKKTTVKHRNLNPEWNEEFGLVVK---DPEYQALELQVYD 332 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~--~~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~---~~~~~~L~v~v~d 332 (538)
...++|+|.++.++... ..++-||.+.+ |++... ...|+.+....+|.|||...|++. -|....|.+.||+
T Consensus 216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~ 292 (940)
T 2wxf_A 216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA 292 (940)
T ss_dssp CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence 46899999999998754 34678888776 443331 224444444678999999999875 2447899999999
Q ss_pred cCCC--C----------CCCccEEEEEeCccCC
Q 046405 333 WEKV--G----------HHDKMGMNVIPLKDIT 353 (538)
Q Consensus 333 ~~~~--~----------~d~~lG~~~i~l~~l~ 353 (538)
.... + .+..+|.+.+++-+-.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 325 (940)
T 2wxf_A 293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDYK 325 (940)
T ss_dssp EC----------------CEEEEEEEEESBCTT
T ss_pred ecCCccCccccccccccccceEEEEeeeEECCc
Confidence 6421 1 2347788877776543
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.24 E-value=4.5 Score=36.75 Aligned_cols=57 Identities=11% Similarity=0.174 Sum_probs=41.0
Q ss_pred CceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEecCCC----CCCCccEEEEEeCcc
Q 046405 295 PSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDWEKV----GHHDKMGMNVIPLKD 351 (538)
Q Consensus 295 ~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~~~~----~~d~~lG~~~i~l~~ 351 (538)
..++|.|...+.+|.|+|++.+.+... ...-|.|+.++...- ..+..+|.+.+||-+
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~ 139 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR 139 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence 346888888999999999999998643 256788998875421 122467777777653
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=89.02 E-value=4.1 Score=34.88 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=84.3
Q ss_pred cCCceeEEEEEEEEecCCCcC-CCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC-------CCCeE
Q 046405 255 MQKPVGILNVKVLRAMKLKKK-DLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP-------EYQAL 326 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~-d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~-------~~~~L 326 (538)
.....+.+.|+|.++.-=+.. ...+..+|+.-+.+.=-.++.+.|.+.. ..+|.+|.+-.|.+... .+..+
T Consensus 13 l~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l 91 (156)
T 2yrb_A 13 LERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTI 91 (156)
T ss_dssp CCSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCE
T ss_pred ccCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCE
Confidence 345578999999998732211 0124457876666653344455677665 77999999888888532 14578
Q ss_pred EEEEEecCCCCCCCccEEEEEeCccCCCCCCce-EEEeccccCCCCCCCCC--ccccEEEEEEEEEee
Q 046405 327 ELQVYDWEKVGHHDKMGMNVIPLKDITPEEPRE-MTLDLLKNMDPNDTRNE--KSRGQVVVEVLYKPF 391 (538)
Q Consensus 327 ~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~l~~~~~~~~~~~~--~~~G~l~l~l~~~p~ 391 (538)
.++++... .+.-+.+|.+.++|.++...+.+- ...+|.. . ++ ..-|+|.+.+.....
T Consensus 92 ~lELhqa~-g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g-~------~g~~~~~G~LeywiRL~~P 151 (156)
T 2yrb_A 92 TLEVHQAY-STEYETIAACQLKFHEILEKSGRIFCTASLIG-T------KGDIPNFGTVEYWFRLRVS 151 (156)
T ss_dssp EEEEEEEC-SSCEEEEEEEEECCSHHHHCCSCEEEEEEECB-S------SSCCTTSEEEEEEEEEEEC
T ss_pred EEEEEEee-CCCceEEEEEEEEhHHhhCcCCceEEEEEEEc-C------CCCcceEEEEEEEEEEecc
Confidence 99998874 345568999999999998665432 2334422 1 13 468999998887654
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=1.2 Score=49.82 Aligned_cols=93 Identities=12% Similarity=0.230 Sum_probs=63.6
Q ss_pred ceEEEEEEeeeccCCCCCCCCCeEEEEE--cCee----EEeecccCCCCCcCcceEEEEec--CCCCCCeEEEEEEEccC
Q 046405 417 GGLLVVILHEAQDVEGKYHTNPSARILF--RGEE----KKTKRIKKNRDPRWEEEFQFTLE--EPPTDDKLHVEVISTSS 488 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~~ 488 (538)
...+.|+|.++.++......+-||++.+ |++. ..|+.+....+|.|||-++|.+. +.|.+..|.+.||+...
T Consensus 216 ~~~f~i~i~~~~~~~~~~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~ 295 (940)
T 2wxf_A 216 EQPFSIELIEGRKVNADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVE 295 (940)
T ss_dssp CSEEEEEEEEEECCCC---CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC-
T ss_pred CCceEEEEEEecccCCCCCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEecC
Confidence 5689999999999887556677877765 4432 35665556788999998777664 66788999999998631
Q ss_pred C--------CCCCCCCCccEEEEEecchh
Q 046405 489 R--------MGLLHPKETLGYIGINLADV 509 (538)
Q Consensus 489 ~--------~g~~~~d~~lG~~~i~L~~l 509 (538)
. .+.-..+..+|.++++|-+-
T Consensus 296 ~~~~~~~~~~~~~~~~~~lg~~~~~lFd~ 324 (940)
T 2wxf_A 296 KAKKARSTKKKSKKADCPIAWANLMLFDY 324 (940)
T ss_dssp ---------------CEEEEEEEEESBCT
T ss_pred CccCccccccccccccceEEEEeeeEECC
Confidence 0 00001245899999999764
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=84.82 E-value=2.4 Score=47.89 Aligned_cols=92 Identities=24% Similarity=0.332 Sum_probs=61.8
Q ss_pred ceEEEEEEeeeccCCCC--CCCCCeEEEEE--cCee----EEeecccCCCCCcCcceEEEEe--cCCCCCCeEEEEEEEc
Q 046405 417 GGLLVVILHEAQDVEGK--YHTNPSARILF--RGEE----KKTKRIKKNRDPRWEEEFQFTL--EEPPTDDKLHVEVIST 486 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~--~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v--~~~~~~~~l~v~V~d~ 486 (538)
...++|+|.++.++... ...+-||++.+ |++. .+|+.+. ..+|.|||-.+|.+ .+.|....|.+.||+.
T Consensus 354 ~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~ 432 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICSV 432 (1091)
T ss_dssp CSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCC
T ss_pred CCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEEe
Confidence 46889999999887642 34677888877 4432 3444333 56788999877766 4667889999999986
Q ss_pred cCCCCCCCCCCccEEEEEecchh
Q 046405 487 SSRMGLLHPKETLGYIGINLADV 509 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l 509 (538)
....+.-.....||.++++|-|-
T Consensus 433 ~~~~~~~~~~~~lg~~n~~lfd~ 455 (1091)
T 3hhm_A 433 KGRKGAKEEHCPLAWGNINLFDY 455 (1091)
T ss_dssp CCCC-------CCEEEEEESBCT
T ss_pred cCccCcccccceeEEeeeeeEcc
Confidence 53111001245899999999764
|
| >2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=80.60 E-value=2.8 Score=47.61 Aligned_cols=93 Identities=13% Similarity=0.210 Sum_probs=62.7
Q ss_pred ceEEEEEEeeeccCCCCCCCCCeEEEEE--cCee----EEeecccCCCCCcCcceEEEEec--CCCCCCeEEEEEEEccC
Q 046405 417 GGLLVVILHEAQDVEGKYHTNPSARILF--RGEE----KKTKRIKKNRDPRWEEEFQFTLE--EPPTDDKLHVEVISTSS 488 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~~~~dpyv~v~~--~~~~----~kT~v~~~t~nP~wne~f~f~v~--~~~~~~~l~v~V~d~~~ 488 (538)
...++|+|.++.++......+-||++.+ |++. .+|+.+....+|.|||-++|.+. +.|.+..|.++||+...
T Consensus 352 ~~~f~i~i~~~~~~~~~~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~~~ 431 (1092)
T 2y3a_A 352 NNPFQITLVKGNKLNTEETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAVLD 431 (1092)
T ss_dssp CSEEEEEECCCCCCCCCSSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC--
T ss_pred CCCEEEEEEEeccCCCCCCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEecC
Confidence 5789999999999987656777777544 5543 35665555788999998777664 66788899999998621
Q ss_pred C-CCC-----------------CCCCCccEEEEEecchh
Q 046405 489 R-MGL-----------------LHPKETLGYIGINLADV 509 (538)
Q Consensus 489 ~-~g~-----------------~~~d~~lG~~~i~L~~l 509 (538)
. .|. -.....+|.++++|-+-
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~ 470 (1092)
T 2y3a_A 432 KVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDF 470 (1092)
T ss_dssp ----------------------------CCEEEEESBCT
T ss_pred ccccccccccccccccccccccccccceeEEEeeeeECC
Confidence 0 000 01234899999998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 538 | ||||
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-25 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 5e-21 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 7e-20 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 6e-04 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 4e-19 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 1e-18 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 5e-07 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 7e-18 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 3e-17 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 4e-04 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 7e-17 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-04 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 1e-16 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 0.002 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 5e-16 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 6e-16 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 2e-15 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 9e-05 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 2e-15 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-14 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 2e-14 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 5e-14 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 2e-04 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 6e-13 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 3e-11 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 4e-05 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 5e-10 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 7e-10 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 100 bits (249), Expect = 1e-25
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Query: 252 AKAMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWN 311
+ P G L V ++ A L+ D + DPYV+L K + PEWN
Sbjct: 2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ--KSNVAEGMGTTPEWN 59
Query: 312 EEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPN 371
E F V + L+ +++D + D +G IPL+ + E + N
Sbjct: 60 ETFIFTVSEGT-TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS-------IPPTAYN 111
Query: 372 DTRNEKSRGQVVVEVLYKPFKGDE 395
++E+ +G++ V + +KP
Sbjct: 112 VVKDEEYKGEIWVALSFKPSGPSS 135
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 87.1 bits (215), Expect = 5e-21
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNE--EFGLV 317
L V +++A +L D+ G SDPYVK+ L DK +T V + LNP +NE F +
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 318 VKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365
+ + L + VYD+++ HD +G +P+ + E DL
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.2 bits (205), Expect = 7e-20
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 262 LNVKVLRAMKLKK---KDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVV 318
V VLRA K+ K D++ DPYV+L ++ K+T + ++NP WNE F ++
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 319 KDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366
+ LE+ + D V + +G + + E +E+ +
Sbjct: 65 DPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ 111
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 6e-04
Identities = 16/127 (12%), Positives = 41/127 (32%), Gaps = 13/127 (10%)
Query: 420 LVVILHEAQDVEGKYH------TNPSARILFRGEEKKTKRIKKNRDPR--WEEEFQFTLE 471
V++ A V +P + KR + + E +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 472 EPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQI 531
+P ++ L + ++ + M ETLG ++ + ++ + +++
Sbjct: 65 DPNQENVLEITLMDANYVM-----DETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEM 119
Query: 532 ELQWRAS 538
L+ +S
Sbjct: 120 SLEVASS 126
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.4 bits (200), Expect = 4e-19
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGL 316
K VGIL VKVL+A L D G SDP+ L+L +D+L + ++NLNPEWN+ F
Sbjct: 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT---VYKNLNPEWNKVFTF 59
Query: 317 VVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNE 376
+KD + LE+ V+D + D +G IPL I +P L +
Sbjct: 60 PIKDI-HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDL-------EQ 111
Query: 377 KSRGQVVVEV 386
+G + +E+
Sbjct: 112 AFKGVIYLEM 121
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 80.1 bits (197), Expect = 1e-18
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL--PSKKTTVKHRNLNPEWNEEFGLV 317
+L V V A L D G SDPYVKLKL D +KT +LNPEWNE F
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 318 VKDPEYQA-LELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365
+K+ + L ++++DW+ +D MG + ++ + + LL
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL-QKAGVDGWFKLL 122
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.6 bits (110), Expect = 5e-07
Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 418 GLLVVILHEAQDV---EGKYHTNPSARILFRGEEK-----KTKRIKKNRDPRWEEEFQFT 469
+L+V++ +A+++ + ++P ++ + K KTK IK + +P W E F+F
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 470 LEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNG 527
L+E D +L VE+ L + +G + +++ + ++ + L+ + G
Sbjct: 75 LKESDKDRRLSVEIWD----WDLTSRNDFMGSLSFGISE-LQKAGVDGWFKLLSQEEG 127
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.2 bits (192), Expect = 7e-18
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIG-ASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVV 318
V + A L D SDPY+K+ + +K KT V + L+P ++E F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 319 KDPE---YQALELQVYDWEKVGHHDKMGMNVIPLKDITP-EEPREMTLDLLKN 367
AL + +++ D +G +IPL I E M +++
Sbjct: 82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 76.3 bits (187), Expect = 3e-17
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
L V VL+A L K D+ G SDPYVK+ L ++ KKT VK N +NE F
Sbjct: 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74
Query: 318 VKDPE--YQALELQVYDWEKVGHHDKMGMNVIPLKDITPEE 356
+ ++E V D E+ ++ +G V+
Sbjct: 75 IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGG 115
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.5 bits (89), Expect = 4e-04
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 16/126 (12%)
Query: 418 GLLVVILHEAQD---VEGKYHTNPSARILF-----RGEEKKTKRIKKNRDPRWEEEFQFT 469
L V++ +A+ + ++P ++ R +KKT K + + E F F
Sbjct: 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74
Query: 470 LEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRI 529
+ P + + V E +G + + + D +I
Sbjct: 75 I---PCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICDFPRRQI 129
Query: 530 QIELQW 535
+W
Sbjct: 130 A---KW 132
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.7 bits (183), Expect = 7e-17
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSK--KTTVKHRNLNPEWNEEFGLV 317
L V +L A L ++ +PYVK+ D+ +T + L P+WN+ F
Sbjct: 14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73
Query: 318 VKDP---EYQALELQVYDWEKVGHH--DKMGMNVIPLKDITPEE 356
+ LE+ ++D +V + +G +I L+ ++
Sbjct: 74 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 117
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (90), Expect = 2e-04
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 417 GGLLVVILHEAQD---VEGKYHTNPSARILFRGEEK-----KTKRIKKNRDPRWEEEFQF 468
G L+V + A+D E NP +I F + +TK +KK +P+W + F +
Sbjct: 13 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 72
Query: 469 TLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKR 514
+ + +E+ E LG I I L + +
Sbjct: 73 SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 118
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 74.9 bits (183), Expect = 1e-16
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 254 AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPS-----------KKTTVK 302
+ +G L + +L+A L +D G SDP+VK+ L + ++T
Sbjct: 12 QINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYV 71
Query: 303 HRNLNPEWNEEFGLVV---KDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPRE 359
++LNPEWN+ + + LE+ V+D+++ +D +G +I L + +
Sbjct: 72 QKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTP 131
Query: 360 MTLDLLK 366
L +
Sbjct: 132 RWYPLKE 138
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.4 bits (83), Expect = 0.002
Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 23/123 (18%)
Query: 418 GLLVVILHEAQDVEGKYHTNPS-----------------ARILFRGEEKKTKRIKKNRDP 460
G L++ + +A+++ + + S + +++TK ++K+ +P
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 461 RWEEEFQF--TLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEK 518
W + + E L V V + LG + I+L+ +
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVW----DYDRFSSNDFLGEVLIDLSSTSHLDNTPRW 133
Query: 519 YHL 521
Y L
Sbjct: 134 YPL 136
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.3 bits (179), Expect = 5e-16
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV 317
G L V +L A LKK D+ G SDPYVK+ L + +L KKTT+K LNP +NE F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 318 VKDPEYQ--ALELQVYDWEKVGHHDKMGMNVIPLKDITPE 355
V + Q + + V D++K+G +D +G + E
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.1 bits (176), Expect = 6e-16
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 257 KPVGILNVKVLRAMKLKK--KDLIGASDPYVKLK---LTDDKLPSKKTTVKHRNLNPEWN 311
+P L V+++ +L K K+ DP V ++ + D + + + NP W+
Sbjct: 2 RPE-RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60
Query: 312 EEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEE 356
EF V P+ + V D++ +D +G + IP +
Sbjct: 61 MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY 105
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.4 bits (174), Expect = 2e-15
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKK--TTVKHRNLNPEWNEEFGLV 317
G L V ++R + L D G SDP+VKL L D K T +K + LNPE+NEEF
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 318 VK--DPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKN 367
+K D ++L++ V+D++ +D +G + + E + + LKN
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKN 124
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.6 bits (94), Expect = 9e-05
Identities = 19/126 (15%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 418 GLLVVILHEAQD---VEGKYHTNPSARILFRG-----EEKKTKRIKKNRDPRWEEEFQFT 469
G L+V + ++ +++P ++ + + KT+ KK +P + EEF +
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 470 LEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRI 529
+ D + + + + +G + ++ +R+ Y + +K+ +I
Sbjct: 75 I---KHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKDKKI 129
Query: 530 QIELQW 535
+ +W
Sbjct: 130 E---RW 132
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.4 bits (174), Expect = 2e-15
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKK--TTVKHRNLNPEWNEEFGLV 317
G+L V +++A LK DL G SDPYVK L + KK T++K LNP +NE
Sbjct: 20 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79
Query: 318 VKDPEYQA--LELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKN 367
V + L + V D++ +GH++ +G+ + + P RE ++L N
Sbjct: 80 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHG-REHWAEMLAN 130
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.6 bits (167), Expect = 1e-14
Identities = 18/125 (14%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVK 319
L + V+ A + K PYV++ + KKT + +P+W + ++V
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVT 62
Query: 320 DPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSR 379
L +V+ + + +G + + + ++ ++ D ++
Sbjct: 63 PVSK--LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETI 120
Query: 380 GQVVV 384
G + +
Sbjct: 121 GDLSI 125
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 68.1 bits (165), Expect = 2e-14
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVK 319
L V++L+A+ L KD G SDPYVK+ L D+ +T V + LNP +NE F V
Sbjct: 18 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77
Query: 320 DPE--YQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTL--DLLK 366
E + L VYD+++ HD +G V+ E+P + L D+L+
Sbjct: 78 LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.9 bits (162), Expect = 5e-14
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 6/110 (5%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLK-LTDDKLPSKKTTVKHRNLNPEWNEEFGLVV 318
L V L A+ + G D YV+ +T +K R L+ W E L +
Sbjct: 26 AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82
Query: 319 KDPEYQA--LELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366
+ E L L + ++ H G + L + +L
Sbjct: 83 AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 2e-04
Identities = 14/112 (12%), Positives = 25/112 (22%), Gaps = 7/112 (6%)
Query: 418 GLLVVILHEAQDVEGKYHTNPSARILFRGEEK----KTKRIKKNRDPRWEEEFQFTLEEP 473
L V EA + + +T K+ WEE L
Sbjct: 26 AELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL--A 83
Query: 474 PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525
+ ++ + G + + L + L S
Sbjct: 84 EEELPTATLTLTLRTCDRFSRHSVA-GELRLGLDGTSVPLGAAQWGELKTSG 134
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 63.8 bits (154), Expect = 6e-13
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 15/114 (13%)
Query: 260 GILNVKVLRAMKLKKKDL-----------IGASDPYVKLKLTDDKLPSKKTTVKHRNLNP 308
G+L +K+ A+ LK DPY+ L D +T K + +P
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALN--VDDSRIGQTATKQKTNSP 63
Query: 309 EWNEEFGLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTL 362
W++EF V + EL V+ +G+ D + I +++ R
Sbjct: 64 AWHDEFVTDVCNGRKI--ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED 115
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.0 bits (142), Expect = 3e-11
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 18/126 (14%)
Query: 260 GILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVK 319
+L V V +A ++ + YV LK+ + K TT+ R P W ++F +
Sbjct: 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN----VKSTTIAVRGSQPSWEQDFMFEIN 54
Query: 320 DPEYQALELQVYDWEKVGHHDKMGMNVIPLKDI--TPEEPREMTLDLLKNMDPNDTRNEK 377
L ++V++ + +G IPL+ I + EE L L D++
Sbjct: 55 RL-DLGLTVEVWNKGLIWDTM-VGTVWIPLRTIRQSNEEGPGEWLTL-------DSQAIM 105
Query: 378 SRGQVV 383
+ ++
Sbjct: 106 ADSEIC 111
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.3 bits (96), Expect = 4e-05
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 418 GLLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDD 477
LL V + +A+ + N L K T + P WE++F F +
Sbjct: 2 SLLCVGVKKAKFDGAQEKFNTYV-TLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGL 60
Query: 478 KLHVE 482
+ V
Sbjct: 61 TVEVW 65
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.0 bits (132), Expect = 5e-10
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 262 LNVKVLRAMKLKKKDLIGASDPYVKLKL----TDDKLPSKKTTVKHRN-LNPEWNEE--F 314
L++ V+ L ++ YV+++L D K + N +NP W EE
Sbjct: 3 LSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 315 GLVVKDPEYQALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364
+ PE +L + V + + +G +IP+ +
Sbjct: 59 FEKILMPELASLRVAVMEE----GNKFLGHRIIPINALNSGYHHLCLHSE 104
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.8 bits (131), Expect = 7e-10
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 275 KDLIGASDPYVKLKLTDDKLP--SKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYD 332
+ AS P+ +K+ + K K + PEW F + + + +++ +
Sbjct: 18 QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMR 75
Query: 333 WEKV-GHHDKMGMNVIPLKDITPEEPREMTLDLLK 366
+ +G++V+ + E LDL
Sbjct: 76 AAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP 110
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.87 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.86 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.84 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.81 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.8 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.79 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.79 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.78 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.78 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.78 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.77 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.76 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.76 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.75 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.74 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.74 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.73 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.72 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.71 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.7 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.7 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.7 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.7 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.69 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.69 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.68 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.68 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.67 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.66 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.65 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.64 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.63 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.63 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.62 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.61 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.6 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.6 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.54 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.38 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.24 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 95.64 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 92.31 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.2e-22 Score=172.89 Aligned_cols=122 Identities=37% Similarity=0.544 Sum_probs=104.1
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCC
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKV 336 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~ 336 (538)
++.|+|+|+|++|+||+.++..|.+||||+++++++. ++|+++++|.||.|||+|.|.+.++ .+.|.|+|||++.+
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~---~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~ 78 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGD 78 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEE---EECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETT
T ss_pred CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeE---EEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCC
Confidence 5789999999999999999999999999999998764 4999999999999999999999876 57899999999999
Q ss_pred CCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 337 GHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 337 ~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
++|++||++.++++++..+..+ |+.+.. .. ..+..+|+|+++++|.
T Consensus 79 ~~d~~lG~~~i~l~~l~~~~~~--~~~l~~-~~----~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 79 KPPDFLGKVAIPLLSIRDGQPN--CYVLKN-KD----LEQAFKGVIYLEMDLI 124 (126)
T ss_dssp EEEEECCBCEEEGGGCCSSCCE--ECCCBC-SC----TTSCCSSEEEEEEEEE
T ss_pred cCcceEEEEEEEHHHCCCCCce--EEEccc-cC----CCCceeEEEEEEEEEE
Confidence 9999999999999999877554 444321 11 1256679999999875
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.86 E-value=7e-22 Score=170.55 Aligned_cols=127 Identities=28% Similarity=0.486 Sum_probs=106.7
Q ss_pred ccCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecC-CCCCceeeeEEEEEEeCCCCCeEEEEEEe
Q 046405 254 AMQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKH-RNLNPEWNEEFGLVVKDPEYQALELQVYD 332 (538)
Q Consensus 254 ~~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d 332 (538)
....|.|+|+|+|++|++|+.++..|++||||+++++++.. +|++++ ++.||.|||+|.|.+.+. ...|.|+|||
T Consensus 4 ~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~---~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d 79 (136)
T d1wfja_ 4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ---KSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFD 79 (136)
T ss_dssp CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEE---ECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECC
T ss_pred CCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeE---EEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEE
Confidence 34578999999999999999999999999999999987653 677765 689999999999999875 4679999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCC-CCceEEEeccccCCCCCCCCCccccEEEEEEEEEeec
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPE-EPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPFK 392 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~~ 392 (538)
+|.+++|++||++.++|.++... .....|+.+.+ +++..|+|+++++|.|..
T Consensus 80 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~--------~~~~~G~i~l~l~~~p~~ 132 (136)
T d1wfja_ 80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--------DEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE--------TTEEEEEEEEEEEEEECC
T ss_pred ecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC--------CCccCEEEEEEEEEEeCC
Confidence 99999999999999999998543 33445666643 256789999999999863
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.1e-20 Score=160.75 Aligned_cols=121 Identities=23% Similarity=0.397 Sum_probs=105.3
Q ss_pred eeEEEEEEEEecCCCcC---CCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCC
Q 046405 259 VGILNVKVLRAMKLKKK---DLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEK 335 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~ 335 (538)
.+.|+|+|++|+||+.. |..|.+||||++++++....+++|+++.++.||.|||+|.|.+.+.....|.++|||++.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence 46899999999999864 446889999999998766566799999999999999999999988777889999999986
Q ss_pred CCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 336 VGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
. +|++||++.++|+++..+.....|++|. ....|+|++++++.|
T Consensus 82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~----------~~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 82 V-MDETLGTATFTVSSMKVGEKKEVPFIFN----------QVTEMVLEMSLEVAS 125 (126)
T ss_dssp S-CCEEEEEEEEEGGGSCTTCEEEEEEEET----------TTEEEEEEEEEECCC
T ss_pred C-CCCeEEEEEEEHHHccCCCeEEEEEEcc----------CCCeEEEEEEEEEEe
Confidence 5 6899999999999999888888999883 345799999988765
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=7e-20 Score=155.66 Aligned_cols=116 Identities=16% Similarity=0.343 Sum_probs=103.0
Q ss_pred ceEEEEEEeeeccCCCC------CCCCCeEEEEEcC---eeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEcc
Q 046405 417 GGLLVVILHEAQDVEGK------YHTNPSARILFRG---EEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTS 487 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~------~~~dpyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~ 487 (538)
++.|+|+|++|+||+.. +.+||||++.+++ ++++|++++++.||.|||.|+|.+.+. ....|.|+|||++
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~-~~~~L~v~V~d~d 80 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCc-ccCcEEEEEEECC
Confidence 68899999999999862 5789999999976 457999999999999999999999864 5678999999987
Q ss_pred CCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEEEEEEEEEeC
Q 046405 488 SRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRIQIELQWRAS 538 (538)
Q Consensus 488 ~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i~l~~~wkp~ 538 (538)
. .+|++||++.++|+++..+...+.||+|.+.++|+|++++++.|+
T Consensus 81 ~-----~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~~s 126 (126)
T d1rlwa_ 81 Y-----VMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVASS 126 (126)
T ss_dssp S-----SCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCCC
T ss_pred C-----CCCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEEeC
Confidence 4 468999999999999988777889999998889999999999875
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.80 E-value=2.5e-19 Score=154.05 Aligned_cols=117 Identities=26% Similarity=0.410 Sum_probs=100.3
Q ss_pred eeEEEEEEEEecCCCcCC-----------CCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEE
Q 046405 259 VGILNVKVLRAMKLKKKD-----------LIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALE 327 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d-----------~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~ 327 (538)
.|.|+|+|++|++|++.+ ..+.+||||+++++++.. .+|++++++.||.|||+|.|.+.+ .+.|.
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~--~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~ 80 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRI--GQTATKQKTNSPAWHDEFVTDVCN--GRKIE 80 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEE--EECCCCSSCSSCEEEEEEEEEEEE--ECEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcC--cEeeEEcCCCCccCccEEEEEEec--CCceE
Confidence 699999999999998753 346789999999986553 589999999999999999999976 36899
Q ss_pred EEEEecCCCCCCCccEEEEEeCccCCCCCC--ceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 328 LQVYDWEKVGHHDKMGMNVIPLKDITPEEP--REMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 328 v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
|+|||++.+++|++||++.++|+++..+.. .+.|++| .+.|++++.+.+.|.
T Consensus 81 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L------------~p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------EPEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------BSSCEEEEEEEEEEE
T ss_pred EEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeC------------CCCcEEEEEEEEEeC
Confidence 999999999999999999999999976643 4578876 246999999999875
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.79 E-value=2.6e-19 Score=154.19 Aligned_cols=117 Identities=22% Similarity=0.415 Sum_probs=101.1
Q ss_pred CceEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeeccc-CCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCC
Q 046405 416 GGGLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIK-KNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMG 491 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g 491 (538)
..|.|+|+|++|++|+.. +.+||||++++++..++|++++ ++.||.|||.|+|.+.+. ...|.|+|||++.
T Consensus 8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~--~~~L~v~V~d~d~--- 82 (136)
T d1wfja_ 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG--TTELKAKIFDKDV--- 82 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS--CCEEEEEECCSSS---
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc--cceEEEEEEEecC---
Confidence 479999999999999873 6899999999999999999887 589999999999999863 4679999999985
Q ss_pred CCCCCCccEEEEEecchhcccc-eeceEEEcCCCC--CeEEEEEEEEEeC
Q 046405 492 LLHPKETLGYIGINLADVVNNK-RINEKYHLIDSK--NGRIQIELQWRAS 538 (538)
Q Consensus 492 ~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~L~~~~--~G~i~l~~~wkp~ 538 (538)
+++|++||++.|+|.++.... ...+||++...+ .|+|++++.|+|+
T Consensus 83 -~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 83 -GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS 131 (136)
T ss_dssp -CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred -CCCCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeC
Confidence 578999999999999987643 457899986443 5999999999995
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.4e-19 Score=152.26 Aligned_cols=113 Identities=24% Similarity=0.413 Sum_probs=97.8
Q ss_pred CceEEEEEEeeeccCCC---CCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCC
Q 046405 416 GGGLLVVILHEAQDVEG---KYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGL 492 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~ 492 (538)
..|+|+|+|++|+||+. .+.+||||++++++++++|++++++.||.|||.|+|.+.+. .+.|.|+|||++.
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~---- 77 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDG---- 77 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEET----
T ss_pred ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc--CceeEEEEEEccC----
Confidence 46999999999999986 36899999999999999999999999999999999999864 4789999999875
Q ss_pred CCCCCccEEEEEecchhcccceeceEEEcCCC-----CCeEEEEEEEEE
Q 046405 493 LHPKETLGYIGINLADVVNNKRINEKYHLIDS-----KNGRIQIELQWR 536 (538)
Q Consensus 493 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~-----~~G~i~l~~~wk 536 (538)
+++|++||++.++|+++..+. .+||.|... .+|+|+|++++-
T Consensus 78 ~~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 78 DKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp TEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CcCcceEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEE
Confidence 567899999999999986654 588887643 369999998863
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=3e-19 Score=152.82 Aligned_cols=123 Identities=17% Similarity=0.276 Sum_probs=98.5
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
.+.|.|+|++|++++.++..+++||||++.++++. ++|++++++.||.|||.|.|.+.+ .+.|.|+|||++.+++
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~---~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~ 79 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKS 79 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEE---EECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSC
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeE---EeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCC
Confidence 48899999999999998888899999999998765 499999999999999999999964 4789999999999999
Q ss_pred CCccEEEEEeCccCCCC-----CCceEEEeccccCCCCCCCCCccccEEEEEEEEEee
Q 046405 339 HDKMGMNVIPLKDITPE-----EPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKPF 391 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~-----~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p~ 391 (538)
|++||++.++|.++... .....++.+... .......|+|.+.+.+...
T Consensus 80 d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~-----~~~~~~~G~L~v~l~~~~~ 132 (133)
T d2nq3a1 80 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-----KEPTETIGDLSICLDGLQL 132 (133)
T ss_dssp CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-----SCTTSEEEEEEEEEESEEC
T ss_pred CceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC-----CCCceEEEEEEEEEeeEEc
Confidence 99999999999987532 123344444321 1225677999999877653
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=1.7e-19 Score=154.56 Aligned_cols=118 Identities=21% Similarity=0.480 Sum_probs=99.0
Q ss_pred cccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEE-----cCeeE
Q 046405 378 SRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILF-----RGEEK 449 (538)
Q Consensus 378 ~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~-----~~~~~ 449 (538)
.+|+|++++.|. .+.|.|+|++|+||+.. +.+||||++++ +..++
T Consensus 2 ~rG~i~l~~~~~---------------------------~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~ 54 (132)
T d1a25a_ 2 RRGRIYIQAHID---------------------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQ 54 (132)
T ss_dssp TTCEEEEEEEES---------------------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCE
T ss_pred cccEEEEEEEec---------------------------CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCcccc
Confidence 479999998773 57899999999999863 57899999999 34567
Q ss_pred EeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCe
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNG 527 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G 527 (538)
+|+++++|.||+|||.|.|.+........|.|+|||++. +++|++||++.|+|+++..+ ..++||+|.+...|
T Consensus 55 kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~----~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g 127 (132)
T d1a25a_ 55 KTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL----TSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEG 127 (132)
T ss_dssp ECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS----SSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHH
T ss_pred EEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC----CCCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCC
Confidence 999999999999999999999765445689999999975 57889999999999998654 46899999865433
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.78 E-value=5.8e-19 Score=151.73 Aligned_cols=114 Identities=17% Similarity=0.320 Sum_probs=99.3
Q ss_pred CceEEEEEEeeeccCCC--------------CCCCCCeEEEEEcCee-EEeecccCCCCCcCcceEEEEecCCCCCCeEE
Q 046405 416 GGGLLVVILHEAQDVEG--------------KYHTNPSARILFRGEE-KKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLH 480 (538)
Q Consensus 416 ~~g~L~v~v~~a~~L~~--------------~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~ 480 (538)
-+|.|+|+|++|++|++ .+.+||||++++++.. .+|++++++.||.|||.|.|.+.+. +.|.
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~---~~l~ 80 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIE 80 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC---CceE
Confidence 47999999999999974 2468999999999876 4899999999999999999999753 6899
Q ss_pred EEEEEccCCCCCCCCCCccEEEEEecchhcccc--eeceEEEcCCCCCeEEEEEEEEEeC
Q 046405 481 VEVISTSSRMGLLHPKETLGYIGINLADVVNNK--RINEKYHLIDSKNGRIQIELQWRAS 538 (538)
Q Consensus 481 v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~--~~~~~~~L~~~~~G~i~l~~~wkp~ 538 (538)
|+|||++. +++|++||.+.|+|+++..+. ..+.||+|+ ++|+|+++++++|+
T Consensus 81 i~V~d~~~----~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 81 LAVFHDAP----IGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEECCS----SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--SSCEEEEEEEEEEE
T ss_pred EEEEEecC----CCCceeEEEEEEEHHHhhhcCCcceeEEEeCC--CCcEEEEEEEEEeC
Confidence 99999975 578999999999999998754 467899997 48999999999874
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=9.6e-19 Score=151.87 Aligned_cols=119 Identities=17% Similarity=0.257 Sum_probs=100.6
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEE---cCeeE
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILF---RGEEK 449 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~---~~~~~ 449 (538)
....|+|++++.|.+. .+.|+|+|++|+||+.. +.+||||++++ +.+++
T Consensus 17 ~~~~G~l~~sl~y~~~-------------------------~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~ 71 (143)
T d1rsya_ 17 EEKLGKLQYSLDYDFQ-------------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF 71 (143)
T ss_dssp -CCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCE
T ss_pred hhcceEEEEEEEEeCC-------------------------CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeE
Confidence 4568999999999754 67999999999999863 57899999999 34557
Q ss_pred EeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCC
Q 046405 450 KTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLID 523 (538)
Q Consensus 450 kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~ 523 (538)
+|++++++.||.|||.|.|.+.... ....|.|+|||++. ++++++||++.|+|+++..+....+||+|+.
T Consensus 72 kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~----~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 72 ETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR----FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp ECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS----SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred EEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC----CCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence 9999999999999999999886421 24579999999975 5688999999999999987777789999974
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.5e-18 Score=148.46 Aligned_cols=107 Identities=34% Similarity=0.519 Sum_probs=92.5
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCCC-CCeEEEEEEecCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDPE-YQALELQVYDWEK 335 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~L~v~v~d~~~ 335 (538)
.+.|.|+|++|+||+.+|..|.+||||++++.+. ...+++|+++++|.||.|||+|.|.+.... ...|.|+|||+|.
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~ 93 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 93 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence 4789999999999999999999999999999432 334579999999999999999999987543 4579999999999
Q ss_pred CCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 336 VGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 336 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
+++|++||++.+++.++..+ ..+.|++|..
T Consensus 94 ~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~ 123 (132)
T d1a25a_ 94 TSRNDFMGSLSFGISELQKA-GVDGWFKLLS 123 (132)
T ss_dssp SSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred CCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence 99999999999999998765 4567888753
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=2.2e-18 Score=149.54 Aligned_cols=110 Identities=32% Similarity=0.447 Sum_probs=96.7
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEec
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYDW 333 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d~ 333 (538)
....+.|+|+|++|+||+.++..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 30 ~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~ 109 (143)
T d1rsya_ 30 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDF 109 (143)
T ss_dssp ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEEC
T ss_pred eCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEc
Confidence 345679999999999999999889999999999965555567999999999999999999987533 367899999999
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
+.++++++||++.++|+++..++....|++|.
T Consensus 110 d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 110 DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred CCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence 99999999999999999999888888999873
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=1.7e-18 Score=147.64 Aligned_cols=119 Identities=19% Similarity=0.271 Sum_probs=96.9
Q ss_pred ccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEc---CeeEE
Q 046405 377 KSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFR---GEEKK 450 (538)
Q Consensus 377 ~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~---~~~~k 450 (538)
.+.|+|.++++|.|. .+.|.|+|++|+||+.. +.+||||++++. .++++
T Consensus 2 ~p~G~l~~sl~y~~~-------------------------~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~k 56 (130)
T d1dqva1 2 APCGRISFALRYLYG-------------------------SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQ 56 (130)
T ss_dssp CSSCEEEEEEECCSS-------------------------SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEE
T ss_pred CCcEEEEEEEEEECC-------------------------CCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEe
Confidence 457999999999764 78999999999999863 578999999994 34579
Q ss_pred eecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhc-ccc-eeceEEEcCCC
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVV-NNK-RINEKYHLIDS 524 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~-~~~-~~~~~~~L~~~ 524 (538)
|++++++.||+|||.|.|.+.... ....|.|+|||++. +++|++||++.|++...+ +.. ....||+|.+.
T Consensus 57 T~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~----~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~ 129 (130)
T d1dqva1 57 TKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR----FSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG 129 (130)
T ss_dssp CCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS----SSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred ceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCC----CCCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence 999999999999999999986532 23579999999975 678999999999865544 322 34679999864
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.4e-17 Score=143.44 Aligned_cols=120 Identities=15% Similarity=0.074 Sum_probs=102.8
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCCCCCCCeEEEEEcC----eeEEe
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGKYHTNPSARILFRG----EEKKT 451 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~dpyv~v~~~~----~~~kT 451 (538)
....|+|++++.|.+. .+.|.|+|++|+||+..+.+||||++++.+ ..++|
T Consensus 9 ~~~~~~l~~sl~y~~~-------------------------~~~L~V~v~~a~~L~~~g~~dpyVkv~l~~~~~~~~~kT 63 (138)
T d1wfma_ 9 WNQAPKLHYCLDYDCQ-------------------------KAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQT 63 (138)
T ss_dssp CSSCCEEEEEEEEETT-------------------------TTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEEC
T ss_pred CCcCCEEEEEEEECCC-------------------------CCEEEEEEEEcCCCCCCCCcCcEEEEEECCCCCccceee
Confidence 5667999999999754 679999999999999888899999999943 23689
Q ss_pred ecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCC
Q 046405 452 KRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDS 524 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~ 524 (538)
++++++.||+|||.|.|.+.... ....|.|+|||++. ++++++||++.|+|.++......++||+|...
T Consensus 64 ~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~----~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~ 133 (138)
T d1wfma_ 64 ALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR----FSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp CCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS----SCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred eEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc----cccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence 99999999999999999987542 24579999999975 57899999999999998766667899999875
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=2.6e-18 Score=146.50 Aligned_cols=111 Identities=32% Similarity=0.459 Sum_probs=92.1
Q ss_pred cCCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEe
Q 046405 255 MQKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYD 332 (538)
Q Consensus 255 ~~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 332 (538)
.....+.|.|+|++|+||+.++..|.+||||++++.+....+++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 13 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d 92 (130)
T d1dqva1 13 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD 92 (130)
T ss_dssp CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred EECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEE
Confidence 3456789999999999999999899999999999976555568999999999999999999998643 35679999999
Q ss_pred cCCCCCCCccEEEEEeCccC-CCC-CCceEEEecc
Q 046405 333 WEKVGHHDKMGMNVIPLKDI-TPE-EPREMTLDLL 365 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l-~~~-~~~~~~~~l~ 365 (538)
++.+++|++||++.+++... ... .....|++|.
T Consensus 93 ~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~ 127 (130)
T d1dqva1 93 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127 (130)
T ss_dssp CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECB
T ss_pred cCCCCCCceEEEEEECchhhhhcCCCCCcEEEecc
Confidence 99999999999999986543 322 2345677774
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=2.1e-17 Score=140.90 Aligned_cols=122 Identities=21% Similarity=0.388 Sum_probs=91.6
Q ss_pred eEEEEEEEEecCCCcC--CCCCCCCcEEEEEEcCCC--CCceeeeecC-CCCCceeeeEEEEEEeCCCCCeEEEEEEecC
Q 046405 260 GILNVKVLRAMKLKKK--DLIGASDPYVKLKLTDDK--LPSKKTTVKH-RNLNPEWNEEFGLVVKDPEYQALELQVYDWE 334 (538)
Q Consensus 260 G~L~V~v~~A~~L~~~--d~~g~~dpyv~v~~~~~~--~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~ 334 (538)
..|+|+|++|++|+.. +..+++||||++++.+.. ..+++|++++ ++.||.|||+|.|.+..+....|.++|||+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 4799999999999754 456789999999995422 2346888765 4579999999999987776788999999999
Q ss_pred CCCCCCccEEEEEeCccCCCCCCceEEEeccccCCCCCCCCCccccEEEEEEEEE
Q 046405 335 KVGHHDKMGMNVIPLKDITPEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYK 389 (538)
Q Consensus 335 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~ 389 (538)
..++|++||++.++|+++..+ ..+++|.... ...-..++|.+.+.+.
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~-----g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKN-----GDQHPSATLFVKISIQ 130 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTT-----SCEEEEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCC---CEEEECCCCC-----cCCCCCCEEEEEEEEE
Confidence 999999999999999999765 3466663211 1123456777777663
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=2.9e-18 Score=148.73 Aligned_cols=108 Identities=27% Similarity=0.407 Sum_probs=92.6
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCC-----------CceeeeecCCCCCceeeeEEEEEEeC---CCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKL-----------PSKKTTVKHRNLNPEWNEEFGLVVKD---PEYQ 324 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~-----------~~~~T~v~~~t~nP~Wne~f~f~v~~---~~~~ 324 (538)
.|.|.|+|++|+||+.++..|.+||||++++.+... .++||++++++.||.|||+|.|.... ....
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence 589999999999999999999999999999954321 12479999999999999999997432 2366
Q ss_pred eEEEEEEecCCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 325 ALELQVYDWEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 325 ~L~v~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
.|.|+|||++.+++|++||++.++|.++..+.....|++|.+
T Consensus 97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~ 138 (142)
T d1rh8a_ 97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcC
Confidence 899999999999999999999999999988877888999854
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=4.4e-17 Score=137.49 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=85.6
Q ss_pred eEEEEEEeeeccCCCCCCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCCCCCC
Q 046405 418 GLLVVILHEAQDVEGKYHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLLHPKE 497 (538)
Q Consensus 418 g~L~v~v~~a~~L~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~~~d~ 497 (538)
+.|.|+|.+|++|.+++..||||++.+++.+.+|.+++ +.||.|||.|.|.+.++ .+.|.|+|||++. .+|+
T Consensus 2 ~~L~V~v~~a~~l~~~~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~--~~~L~v~V~d~~~-----~~d~ 73 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL--DLGLTVEVWNKGL-----IWDT 73 (128)
T ss_dssp EEEEEEEEEEECSSCGGGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC--SSEEEEEEEECCS-----SCEE
T ss_pred eEEEEEEEEEECCCCCCCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc--cceEEEEEEeCCC-----cCCc
Confidence 57999999999999988999999999999988998886 56999999999999874 4789999999874 3689
Q ss_pred ccEEEEEecchhccc--ceeceEEEcCC
Q 046405 498 TLGYIGINLADVVNN--KRINEKYHLID 523 (538)
Q Consensus 498 ~lG~~~i~L~~l~~~--~~~~~~~~L~~ 523 (538)
+||++.|+|+++... ....+||+|..
T Consensus 74 ~lG~~~I~L~~l~~~~~~~~~~W~~L~~ 101 (128)
T d2cjta1 74 MVGTVWIPLRTIRQSNEEGPGEWLTLDS 101 (128)
T ss_dssp EEEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred ceEEEEEEehhhccCCCCCCCeeEECCc
Confidence 999999999999753 34678999964
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=5.3e-17 Score=136.94 Aligned_cols=121 Identities=20% Similarity=0.296 Sum_probs=91.2
Q ss_pred eeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 259 VGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 259 ~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
++.|.|+|.+|++|..++ +.||||++++++.+ .+|.+++ +.||.|||+|.|.+.++ .+.|.|+|||++.. +
T Consensus 1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k---~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~ 71 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVK---STTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-W 71 (128)
T ss_dssp CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEE---EECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-C
T ss_pred CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEE---EEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-C
Confidence 478999999999999876 57999999998654 4777776 45999999999999877 57899999999875 6
Q ss_pred CCccEEEEEeCccCCCC--CCceEEEeccccCCCCC----CCCCccccEEEEEEEE
Q 046405 339 HDKMGMNVIPLKDITPE--EPREMTLDLLKNMDPND----TRNEKSRGQVVVEVLY 388 (538)
Q Consensus 339 d~~lG~~~i~l~~l~~~--~~~~~~~~l~~~~~~~~----~~~~~~~G~l~l~l~~ 388 (538)
|++||++.|+|+++... .....|++|........ .........|+++++|
T Consensus 72 d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 72 DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp EEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred CcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 99999999999999744 34557888854221110 0112344577777776
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=5.9e-18 Score=146.71 Aligned_cols=117 Identities=17% Similarity=0.319 Sum_probs=97.2
Q ss_pred ccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-------
Q 046405 377 KSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG------- 446 (538)
Q Consensus 377 ~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~------- 446 (538)
...|+|++++.|. .|.|.|+|++|+||+. .+.+||||++++..
T Consensus 4 p~~G~l~lsl~y~---------------------------~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~ 56 (142)
T d1rh8a_ 4 PITGEIQLQINYD---------------------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMV 56 (142)
T ss_dssp CCCCEEEEEEEEE---------------------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEE
T ss_pred CcceEEEEEEEEe---------------------------CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccc
Confidence 4579999999994 4789999999999986 35799999999832
Q ss_pred -------eeEEeecccCCCCCcCcceEEEEecCC--CCCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceece
Q 046405 447 -------EEKKTKRIKKNRDPRWEEEFQFTLEEP--PTDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINE 517 (538)
Q Consensus 447 -------~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~ 517 (538)
.++||++++++.||.|||.|.|.+... .....|.|+|||++. +++|++||++.|+|.++.......+
T Consensus 57 ~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~----~~~~~~lG~~~i~L~~l~~~~~~~~ 132 (142)
T d1rh8a_ 57 VQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDR----FSSNDFLGEVLIDLSSTSHLDNTPR 132 (142)
T ss_dssp CCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECS----SSCEEEEEEEEEETTSCGGGTTCCE
T ss_pred cccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecC----CCCCeeeEEEEEEhHHcCCCCCceE
Confidence 124799999999999999999985321 134579999999975 5788999999999999988777889
Q ss_pred EEEcCCC
Q 046405 518 KYHLIDS 524 (538)
Q Consensus 518 ~~~L~~~ 524 (538)
||+|.+.
T Consensus 133 W~~L~~~ 139 (142)
T d1rh8a_ 133 WYPLKEQ 139 (142)
T ss_dssp EEECBCC
T ss_pred EEECcCc
Confidence 9999864
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1e-16 Score=137.90 Aligned_cols=108 Identities=25% Similarity=0.367 Sum_probs=88.6
Q ss_pred CceeEEEEEEEEecCCCcCCCCC-CCCcEEEEEEcCCCCCceeeeecCCCCCceeeeEEEEEEeCC---CCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIG-ASDPYVKLKLTDDKLPSKKTTVKHRNLNPEWNEEFGLVVKDP---EYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g-~~dpyv~v~~~~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~---~~~~L~v~v~d 332 (538)
...+.|+|+|++|+||+.++..+ .+||||++++.+.....++|++++++.||.|||+|.|..... ....|+|+|||
T Consensus 19 ~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d 98 (138)
T d1ugka_ 19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS 98 (138)
T ss_dssp GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred CCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEE
Confidence 34578999999999999887665 479999999976655567999999999999999999974322 24589999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCC-CceEEEec
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEE-PREMTLDL 364 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~l 364 (538)
+|.+++|++||++.++|+++...+ ....|..+
T Consensus 99 ~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~ 131 (138)
T d1ugka_ 99 FDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI 131 (138)
T ss_dssp ECSSCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred CCCCCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence 999999999999999999986543 44455554
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.8e-17 Score=138.18 Aligned_cols=115 Identities=23% Similarity=0.444 Sum_probs=89.7
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC---CCCCCeEEEEEc-----CeeEEe
Q 046405 380 GQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK---YHTNPSARILFR-----GEEKKT 451 (538)
Q Consensus 380 G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~-----~~~~kT 451 (538)
|+|++++.|.|. .+.|.|+|++|+||+.. +.+||||++++. ..+++|
T Consensus 1 G~l~l~l~y~~~-------------------------~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT 55 (125)
T d2bwqa1 1 GQLSIKLWFDKV-------------------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT 55 (125)
T ss_dssp CEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEEC
T ss_pred CEEEEEEEEECC-------------------------CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCcccccc
Confidence 899999999865 68999999999999863 578999999982 345799
Q ss_pred ecccCCCCCcCcceEEEEe-cCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcC
Q 046405 452 KRIKKNRDPRWEEEFQFTL-EEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLI 522 (538)
Q Consensus 452 ~v~~~t~nP~wne~f~f~v-~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~ 522 (538)
++++++.||.|||.|.|.. .... ....|.|+|||++... .+++.+||++.++|+++..++. .+||+|+
T Consensus 56 ~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~--~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 56 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVR--EEESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp CCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC---------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred CEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCCCC--CCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence 9999999999999999974 3211 2347999999987520 1345699999999999876543 6899985
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=6.1e-17 Score=139.38 Aligned_cols=102 Identities=18% Similarity=0.275 Sum_probs=84.3
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEc--C---eeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFR--G---EEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~--~---~~~k 450 (538)
+|+|+++++|.|. .+.|.|+|++|+||+. .+.+||||++++. + .+++
T Consensus 1 rG~l~~sl~Y~~~-------------------------~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~k 55 (138)
T d1w15a_ 1 RGELLVSLCYQST-------------------------TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKK 55 (138)
T ss_dssp CCEEEEEEEEETT-------------------------TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEE
T ss_pred CcEEEEEEEEcCC-------------------------CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCcccc
Confidence 5999999999975 7899999999999986 3578999999982 2 2358
Q ss_pred eecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchh
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADV 509 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l 509 (538)
|++++++.||.|||.|.|.+..... ...|.|.|||++. ++++++||++.|++.+.
T Consensus 56 T~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 56 THVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER----GSRNEVIGRLVLGATAE 111 (138)
T ss_dssp CCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT----TSCCEEEEEEEESTTCC
T ss_pred ceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCC----CCCCCEEEEEEEcchhC
Confidence 9999999999999999999865433 2369999999975 57899999999999764
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=1.4e-17 Score=143.41 Aligned_cols=120 Identities=19% Similarity=0.382 Sum_probs=96.3
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEc-----CeeEE
Q 046405 379 RGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFR-----GEEKK 450 (538)
Q Consensus 379 ~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~-----~~~~k 450 (538)
+|+|.++++|.|. .+.|.|+|++|+||+. .+.+||||++++. ..++|
T Consensus 1 rG~l~l~l~Y~~~-------------------------~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~k 55 (137)
T d2cm5a1 1 RGKILVSLMYSTQ-------------------------QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHK 55 (137)
T ss_dssp CCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEE
T ss_pred CcEEEEEEEEECC-------------------------CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeec
Confidence 5999999999865 7899999999999985 3579999999983 24569
Q ss_pred eecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCCCeEE
Q 046405 451 TKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKNGRI 529 (538)
Q Consensus 451 T~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~G~i 529 (538)
|++++++.||.|||.|.|.+.... ....|.|.|+|++. ++++++||++.+++.++.. ...+||+|.+.+...+
T Consensus 56 T~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~----~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~~~~~~v 129 (137)
T d2cm5a1 56 TQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI----GKSNDYIGGCQLGISAKGE--RLKHWYECLKNKDKKI 129 (137)
T ss_dssp CCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCEEEEEEEEETTCCHH--HHHHHHHHHHCTTCCE
T ss_pred CEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCC----CCCCCEEEEEEeCccccCc--chhhhhhHhhCCCCee
Confidence 999999999999999999986432 23579999999875 5788999999999987533 2356777665544444
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.7e-16 Score=135.25 Aligned_cols=119 Identities=18% Similarity=0.305 Sum_probs=95.0
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCCC----CCCCCeEEEEE---cCee
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEGK----YHTNPSARILF---RGEE 448 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~----~~~dpyv~v~~---~~~~ 448 (538)
+...|+|++++.|.+. .+.|.|+|++|+||+.. +.+||||++++ +..+
T Consensus 5 ~~~~G~l~~sl~Y~~~-------------------------~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~ 59 (138)
T d1ugka_ 5 SSGLGTLFFSLEYNFE-------------------------RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHK 59 (138)
T ss_dssp CCCCCEEEEEEEEEGG-------------------------GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSE
T ss_pred CCCCEEEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEe
Confidence 4568999999999875 67899999999999863 24799999999 3456
Q ss_pred EEeecccCCCCCcCcceEEEEecCC-C-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcc-cceeceEEEcCC
Q 046405 449 KKTKRIKKNRDPRWEEEFQFTLEEP-P-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVN-NKRINEKYHLID 523 (538)
Q Consensus 449 ~kT~v~~~t~nP~wne~f~f~v~~~-~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~-~~~~~~~~~L~~ 523 (538)
++|++++++.||.|||.|.|..... . ....|.|+|||++. +++|++||++.|+|+++.. ......|+.+..
T Consensus 60 ~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~----~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~ 133 (138)
T d1ugka_ 60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR----FSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp EECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS----SCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred EeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCC----CCCCcEEEEEEEEcccccCCCCeEEEEeeccC
Confidence 7999999999999999999974321 1 13479999999875 5789999999999999864 334456666543
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.5e-16 Score=135.78 Aligned_cols=112 Identities=21% Similarity=0.351 Sum_probs=91.5
Q ss_pred ceEEEEEEeeeccCCCC---CCCCCeEEEEEcCeeEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 417 GGLLVVILHEAQDVEGK---YHTNPSARILFRGEEKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 417 ~g~L~v~v~~a~~L~~~---~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
.+.|.|+|++|++++.. +.+||||++.++++.++|++++++.||.|||.|+|.+.. .+.|.|+|||++. +
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~---~~~l~~~V~d~d~----~ 77 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQT----L 77 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCS----S
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe---cceeEEEEEEccC----C
Confidence 47899999999999763 478999999999999999999999999999999999975 3689999999986 6
Q ss_pred CCCCccEEEEEecchhccc--c-e--eceEEEcCCC-----CCeEEEEEEEE
Q 046405 494 HPKETLGYIGINLADVVNN--K-R--INEKYHLIDS-----KNGRIQIELQW 535 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~~--~-~--~~~~~~L~~~-----~~G~i~l~~~w 535 (538)
++|++||++.++|.++... . . ...++.|.+. ..|+|.+.++.
T Consensus 78 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~ 129 (133)
T d2nq3a1 78 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG 129 (133)
T ss_dssp SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred CCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence 7899999999999998753 1 2 2334444332 24888887764
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.2e-16 Score=137.41 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=92.0
Q ss_pred CCceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC-CCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEe
Q 046405 256 QKPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK-LPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYD 332 (538)
Q Consensus 256 ~~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~-~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 332 (538)
....+.|.|+|++|++|+. .|.+||||++++.++. ...++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 22 ~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d 98 (138)
T d1wfma_ 22 DCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRT 98 (138)
T ss_dssp ETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEE
T ss_pred CCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEee
Confidence 3456899999999999953 4678999999996542 2346899999999999999999998643 36789999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEeccc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLLK 366 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~~ 366 (538)
++.++++++||++.|+|.++......+.|++|..
T Consensus 99 ~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~ 132 (138)
T d1wfma_ 99 CDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp CCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred ecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence 9999999999999999999988778889999854
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=3.1e-16 Score=138.00 Aligned_cols=119 Identities=20% Similarity=0.327 Sum_probs=97.4
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcC-----e
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRG-----E 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~-----~ 447 (538)
.+..|+|.++++|.|. .+.|.|+|++|+||+. .+.+||||++++.. .
T Consensus 8 ~~~~G~l~~sl~Y~~~-------------------------~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~ 62 (157)
T d1uowa_ 8 LEKLGDICFSLRYVPT-------------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLK 62 (157)
T ss_dssp GGCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEE
T ss_pred ceeeeEEEEEEEEcCC-------------------------CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCcccc
Confidence 4668999999999975 7899999999999986 35899999999843 2
Q ss_pred eEEeecccCCCCCcCcceEEEEecCCCC-CCeEEEEEEEccCCCCCCCCCCccEEEEEecchh----------ccc--ce
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLEEPPT-DDKLHVEVISTSSRMGLLHPKETLGYIGINLADV----------VNN--KR 514 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l----------~~~--~~ 514 (538)
.++|++++++.||+|||.|.|.+..... ...|.|+|||++. ++++++||++.|++... ..+ ..
T Consensus 63 ~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~----~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~ 138 (157)
T d1uowa_ 63 KKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK----IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRP 138 (157)
T ss_dssp EEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS----SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCC
T ss_pred ceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCC----CCCCceeEEEEEecccCChhHHHHHHHHhCCCCc
Confidence 3489999999999999999999875422 3479999999985 67899999999999653 322 34
Q ss_pred eceEEEcCC
Q 046405 515 INEKYHLID 523 (538)
Q Consensus 515 ~~~~~~L~~ 523 (538)
+.+||+|..
T Consensus 139 v~~Wh~L~~ 147 (157)
T d1uowa_ 139 IAQWHTLQV 147 (157)
T ss_dssp EEEEEECBC
T ss_pred eeEeEeCCC
Confidence 678999975
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.9e-16 Score=133.87 Aligned_cols=107 Identities=24% Similarity=0.369 Sum_probs=84.2
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEE-EeCC--CCCeEEEEEE
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLV-VKDP--EYQALELQVY 331 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~-v~~~--~~~~L~v~v~ 331 (538)
...+.|+|+|++|+||+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|. +... ....|.|+||
T Consensus 11 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~ 90 (125)
T d2bwqa1 11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW 90 (125)
T ss_dssp TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence 345799999999999999988899999999999543 2334689999999999999999996 4322 2567999999
Q ss_pred ecCCC--CCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 332 DWEKV--GHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 332 d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
|++.. +++++||++.++|+++..++. ..|++|
T Consensus 91 d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L 124 (125)
T d2bwqa1 91 DQARVREEESEFLGEILIELETALLDDE-PHWYKL 124 (125)
T ss_dssp EC-------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred ECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence 99875 345699999999999986643 468776
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=3.9e-16 Score=134.23 Aligned_cols=96 Identities=32% Similarity=0.401 Sum_probs=76.5
Q ss_pred ceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEEec
Q 046405 258 PVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVYDW 333 (538)
Q Consensus 258 ~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d~ 333 (538)
..+.|.|+|++|+||+.++..+.+||||++++.+. ...+++|++++++.||.|||+|.|.+.... ...|.|+|||+
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~ 92 (138)
T d1w15a_ 13 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS 92 (138)
T ss_dssp TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeC
Confidence 45789999999999999998899999999998432 333468999999999999999999985433 45799999999
Q ss_pred CCCCCCCccEEEEEeCccCC
Q 046405 334 EKVGHHDKMGMNVIPLKDIT 353 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~ 353 (538)
+.++++++||++.+++....
T Consensus 93 ~~~~~~~~iG~~~i~l~~~~ 112 (138)
T d1w15a_ 93 ERGSRNEVIGRLVLGATAEG 112 (138)
T ss_dssp CTTSCCEEEEEEEESTTCCS
T ss_pred CCCCCCCEEEEEEEcchhCC
Confidence 99999999999999998653
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=1.3e-15 Score=129.51 Aligned_cols=111 Identities=18% Similarity=0.301 Sum_probs=88.5
Q ss_pred eEEEEEEeeeccCCC-----CCCCCCeEEEEEc-----CeeEEeecccCC-CCCcCcceEEEEecCCCCCCeEEEEEEEc
Q 046405 418 GLLVVILHEAQDVEG-----KYHTNPSARILFR-----GEEKKTKRIKKN-RDPRWEEEFQFTLEEPPTDDKLHVEVIST 486 (538)
Q Consensus 418 g~L~v~v~~a~~L~~-----~~~~dpyv~v~~~-----~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~l~v~V~d~ 486 (538)
..|+|+|++|++|+. .+.+||||++++. ..+++|++++++ .||.|||.|+|.+... ....|.++|+|+
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~-~~~~L~~~V~D~ 82 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMVEDY 82 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCG-GGCEEEEEEEEC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcc-hhceEEEEEEEe
Confidence 579999999999964 2468999999994 356799988765 6999999999998764 556899999999
Q ss_pred cCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC-----CeEEEEEEEEE
Q 046405 487 SSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK-----NGRIQIELQWR 536 (538)
Q Consensus 487 ~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~-----~G~i~l~~~wk 536 (538)
+. +++|++||++.|+|+.+..+ .+|++|.+.. .++|.++++++
T Consensus 83 d~----~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 83 DS----SSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp CT----TTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred cC----CCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 85 56789999999999988653 4689997653 35667777664
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=8.8e-16 Score=134.99 Aligned_cols=96 Identities=38% Similarity=0.595 Sum_probs=83.2
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCCC--CCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDPE--YQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~--~~~L~v~v~d 332 (538)
...|.|.|+|++|+||+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.+...+ ...|.|+|||
T Consensus 22 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d 101 (157)
T d1uowa_ 22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD 101 (157)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred CCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcc
Confidence 346899999999999999988899999999998543 233458999999999999999999986543 4689999999
Q ss_pred cCCCCCCCccEEEEEeCccC
Q 046405 333 WEKVGHHDKMGMNVIPLKDI 352 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l 352 (538)
++.++++++||++.+++...
T Consensus 102 ~~~~~~~~~iG~~~i~l~~~ 121 (157)
T d1uowa_ 102 YDKIGKNDAIGKVFVGYNST 121 (157)
T ss_dssp CCSSSCCCEEEEEEEETTCC
T ss_pred cCCCCCCceeEEEEEecccC
Confidence 99999999999999999764
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=9.9e-16 Score=131.54 Aligned_cols=107 Identities=32% Similarity=0.449 Sum_probs=88.0
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCC--CCCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDD--KLPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 332 (538)
...|.|+|+|++|+||+..+..+.+||||++++.+. ...+++|++++++.||.|||+|.|.+... ....|.|.|||
T Consensus 12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~ 91 (137)
T d2cm5a1 12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD 91 (137)
T ss_dssp TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeee
Confidence 356899999999999999888899999999998542 34457899999999999999999998643 25689999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEecc
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDLL 365 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l~ 365 (538)
++..++|++||++.+++.++.. ....|+++.
T Consensus 92 ~~~~~~~~~iG~~~i~l~~~~~--~~~~W~~l~ 122 (137)
T d2cm5a1 92 YDIGKSNDYIGGCQLGISAKGE--RLKHWYECL 122 (137)
T ss_dssp CCSSSCCEEEEEEEEETTCCHH--HHHHHHHHH
T ss_pred CCCCCCCCEEEEEEeCccccCc--chhhhhhHh
Confidence 9999999999999999987533 233455554
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=5e-17 Score=141.22 Aligned_cols=120 Identities=17% Similarity=0.302 Sum_probs=95.9
Q ss_pred CccccEEEEEEEEEeecCCCCCCCCCCCCCccCCCCCCCCCceEEEEEEeeeccCCC---CCCCCCeEEEEEcCe-----
Q 046405 376 EKSRGQVVVEVLYKPFKGDEIPPDMDGPNSVQKAPEGTPEGGGLLVVILHEAQDVEG---KYHTNPSARILFRGE----- 447 (538)
Q Consensus 376 ~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~---~~~~dpyv~v~~~~~----- 447 (538)
....|+|+++++|.|. .|.|.|+|++|+||+. .+.+||||++++...
T Consensus 3 ~~~~G~l~~sl~Y~~~-------------------------~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~ 57 (145)
T d1dqva2 3 KADLGELNFSLCYLPT-------------------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLK 57 (145)
T ss_dssp CSCCCEEEEEEEEETT-------------------------TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTS
T ss_pred cCcceEEEEEEEEcCC-------------------------CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccce
Confidence 4568999999999975 7899999999999975 357899999998543
Q ss_pred eEEeecccCCCCCcCcceEEEEecCCC-CCCeEEEEEEEccCCCCCCCCCCccEEEEEecchhcccceeceEEEcCCCC
Q 046405 448 EKKTKRIKKNRDPRWEEEFQFTLEEPP-TDDKLHVEVISTSSRMGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSK 525 (538)
Q Consensus 448 ~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~l~v~V~d~~~~~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~ 525 (538)
+++|++++++.||.|||.|.|.+.... ....|.|.|+|++. ++++++||++.|+|+.+...+ ..+||+|..++
T Consensus 58 ~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~----~~~~~~iG~~~i~l~~~~~~~-~~~W~~l~~~p 131 (145)
T d1dqva2 58 KRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC----IGHNEVIGVCRVGPEAADPHG-REHWAEMLANP 131 (145)
T ss_dssp CEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCS----SSCCEEEEECCCSSCTTCHHH-HHHHHTSSSSS
T ss_pred eecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCC----CCCCcEEEEEEECchHcCchh-hHHHHHHHhCC
Confidence 468999999999999999999876421 23479999999875 578899999999998764332 35666665443
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=2.9e-15 Score=125.51 Aligned_cols=110 Identities=18% Similarity=0.280 Sum_probs=85.8
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDPEYQALELQVYDWEKVGH 338 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~L~v~v~d~~~~~~ 338 (538)
.+.|.+..+..++ ...+.+||||++++.+.. ...++|+++++|+||+|||+|.|.+.+ .+.|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---- 77 (123)
T ss_dssp EEEEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET----
T ss_pred EEEEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc----
Confidence 3444445555544 346889999999996532 123579999999999999999999975 468999999986
Q ss_pred CCccEEEEEeCccCC-----CCCCceEEEeccccCCCCCCCCCccccEEEEEEEEEe
Q 046405 339 HDKMGMNVIPLKDIT-----PEEPREMTLDLLKNMDPNDTRNEKSRGQVVVEVLYKP 390 (538)
Q Consensus 339 d~~lG~~~i~l~~l~-----~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~~~p 390 (538)
|+++|.+.+++.++. .+...+.|++| .+.|+|++++.|++
T Consensus 78 d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L------------~~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDL------------QPQAKVLMCVQYFL 122 (123)
T ss_dssp TEEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------BSSCEEEEEEEEEE
T ss_pred ccccCccEEehhheeeccccCCCcccEEEeC------------CCCEEEEEEEEEec
Confidence 789999999999885 34567788886 34799999999985
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=3.4e-15 Score=125.06 Aligned_cols=105 Identities=10% Similarity=0.219 Sum_probs=85.0
Q ss_pred EEEEEeeeccCCC-CCCCCCeEEEEEcCe-----eEEeecccCCCCCcCcceEEEEecCCCCCCeEEEEEEEccCCCCCC
Q 046405 420 LVVILHEAQDVEG-KYHTNPSARILFRGE-----EKKTKRIKKNRDPRWEEEFQFTLEEPPTDDKLHVEVISTSSRMGLL 493 (538)
Q Consensus 420 L~v~v~~a~~L~~-~~~~dpyv~v~~~~~-----~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~l~v~V~d~~~~~g~~ 493 (538)
+.+.++.+..++. .+.+||||++++++. .++|+++++|+||+|||.|+|.+.+. +.+.|.|+|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~---~~l~i~V~d~d------ 77 (123)
T d1bdya_ 7 ISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG---RVIQIVLMRAA------ 77 (123)
T ss_dssp EEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT---CEEEEEEEEET------
T ss_pred EEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc---cEEEEEEEEcc------
Confidence 4444555555544 468999999999653 34789999999999999999999763 68999999975
Q ss_pred CCCCccEEEEEecchhcc-----cceeceEEEcCCCCCeEEEEEEEEEe
Q 046405 494 HPKETLGYIGINLADVVN-----NKRINEKYHLIDSKNGRIQIELQWRA 537 (538)
Q Consensus 494 ~~d~~lG~~~i~L~~l~~-----~~~~~~~~~L~~~~~G~i~l~~~wkp 537 (538)
|+++|.+.+++.++.. +...+.|++|+ +.|+|+++++|.+
T Consensus 78 --d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 --EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL 122 (123)
T ss_dssp --TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEEE
T ss_pred --ccccCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEEec
Confidence 5799999999999875 33567999997 5899999999975
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=9.4e-16 Score=132.99 Aligned_cols=107 Identities=34% Similarity=0.572 Sum_probs=87.9
Q ss_pred CceeEEEEEEEEecCCCcCCCCCCCCcEEEEEEcCCC--CCceeeeecCCCCCceeeeEEEEEEeCC--CCCeEEEEEEe
Q 046405 257 KPVGILNVKVLRAMKLKKKDLIGASDPYVKLKLTDDK--LPSKKTTVKHRNLNPEWNEEFGLVVKDP--EYQALELQVYD 332 (538)
Q Consensus 257 ~~~G~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~~~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~L~v~v~d 332 (538)
...|.|.|+|++|+||+..+..+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 17 ~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d 96 (145)
T d1dqva2 17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD 96 (145)
T ss_dssp TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEe
Confidence 3568999999999999998888999999999996543 3346899999999999999999987532 35679999999
Q ss_pred cCCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 333 WEKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 333 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
++..++|++||++.+++..+... ....|+++
T Consensus 97 ~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l 127 (145)
T d1dqva2 97 YDCIGHNEVIGVCRVGPEAADPH-GREHWAEM 127 (145)
T ss_dssp CCSSSCCEEEEECCCSSCTTCHH-HHHHHHTS
T ss_pred cCCCCCCcEEEEEEECchHcCch-hhHHHHHH
Confidence 99999999999999999876432 23445554
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.3e-12 Score=107.28 Aligned_cols=93 Identities=25% Similarity=0.450 Sum_probs=69.7
Q ss_pred EEEEEEEEecCCCcCCCCCCCCcEEEEEEcC---CCCCceeeee--cCCCCCceeeeE-EEE-EEeCCCCCeEEEEEEec
Q 046405 261 ILNVKVLRAMKLKKKDLIGASDPYVKLKLTD---DKLPSKKTTV--KHRNLNPEWNEE-FGL-VVKDPEYQALELQVYDW 333 (538)
Q Consensus 261 ~L~V~v~~A~~L~~~d~~g~~dpyv~v~~~~---~~~~~~~T~v--~~~t~nP~Wne~-f~f-~v~~~~~~~L~v~v~d~ 333 (538)
+|+|+|++|++|+.+ +.||||++++-+ +...+.+|++ .+++.||.|||+ |.| .+..++...|.|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 689999999999865 479999999943 1222234443 467899999976 444 45555566899999997
Q ss_pred CCCCCCCccEEEEEeCccCCCCCCceEEEec
Q 046405 334 EKVGHHDKMGMNVIPLKDITPEEPREMTLDL 364 (538)
Q Consensus 334 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~l 364 (538)
+ |++||++.+|++.+..+- .+++|
T Consensus 78 d----~~~lG~~~ipl~~l~~Gy---R~vpL 101 (122)
T d2zkmx2 78 G----NKFLGHRIIPINALNSGY---HHLCL 101 (122)
T ss_dssp T----TEEEEEEEEEGGGBCCEE---EEEEE
T ss_pred C----CCEEEEEEEEcccCcCCc---eEEEc
Confidence 5 789999999999998763 34555
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=3.9e-11 Score=99.63 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=71.3
Q ss_pred EEEEEEeeeccCCCCCCCCCeEEEEEcC------eeEEeec--ccCCCCCcCcce-EEEEecCCCCCCeEEEEEEEccCC
Q 046405 419 LLVVILHEAQDVEGKYHTNPSARILFRG------EEKKTKR--IKKNRDPRWEEE-FQFTLEEPPTDDKLHVEVISTSSR 489 (538)
Q Consensus 419 ~L~v~v~~a~~L~~~~~~dpyv~v~~~~------~~~kT~v--~~~t~nP~wne~-f~f~v~~~~~~~~l~v~V~d~~~~ 489 (538)
.|.|+|++|++|+.. ..||||++++-| ++++|++ ..++.||.|||. |.|.....+....|.+.|||++
T Consensus 2 tl~V~Visaq~L~~~-~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d-- 78 (122)
T d2zkmx2 2 TLSITVISGQFLSER-SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG-- 78 (122)
T ss_dssp EEEEEEEEEESCCSS-CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT--
T ss_pred EEEEEEEEeeCCCCC-CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC--
Confidence 588999999999864 689999999842 3344444 356899999976 5554333234468999999974
Q ss_pred CCCCCCCCccEEEEEecchhcccceeceEEEcCCCCC
Q 046405 490 MGLLHPKETLGYIGINLADVVNNKRINEKYHLIDSKN 526 (538)
Q Consensus 490 ~g~~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~ 526 (538)
|++||++.+||+.+..+ .++.+|.+..+
T Consensus 79 ------~~~lG~~~ipl~~l~~G---yR~vpL~~~~g 106 (122)
T d2zkmx2 79 ------NKFLGHRIIPINALNSG---YHHLCLHSESN 106 (122)
T ss_dssp ------TEEEEEEEEEGGGBCCE---EEEEEEECTTC
T ss_pred ------CCEEEEEEEEcccCcCC---ceEEEccCCCc
Confidence 58999999999988554 46778877643
|