Citrus Sinensis ID: 046411

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
MAAAKLITISCVVSVFLIFFITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMNKAATSTCKNIGGTISGVIMPRSCL
cccHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccHHHHHHHHHHHHccccccEEEEcccEEEEEEEEEEccccccEEEEEEEEEEccccccccccccEEEEEEEEEEEEEEccEEEccccEEEcccccccccccccEEEEEEEEccEEEEcEEEEccccEEEEEEEEEEEEEEEEEEEcccccccccEEcccccccEEEEccEEEccccEEEEccccEEEEEEEEEEccccccEEEEEccccccccEEEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEEcccccccccccccEEEEEEEEEEEEEEEcccccEEEEccccccEEcEEEEEEEEEEccccccEEEEEEEEEEEccccccccc
cccHHHHHHHHHHHHHHHHHcccccccEEEEHccccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEccccccEEEEEEEEEEccccHHHccccccEEEEEEEcEEEEEEEEEcccccHHHcccccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEccEEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEcccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEccccccEEEccccccccccccccccc
MAAAKLITISCVVSVFLIFFITLSnaasynvitfgakpdgrtdstQSFLRAWAVACRssqastivvpkgryliknavfrgpcksritvqisgtivapndyralgksdrwILFIKVDRlsiiggtldgkgaGFWAcrksgrncpvgtrsitinsanNVIVSGLTSINSQLSHLVISSCNNVIVRNvkfiapaespntdgihvesstgvtitggtiqtgddcisvgrgtrnlhmsnikcgpghgvsigslgkdlnedgvenvtltnsvftgsdngvrikswarpsrsfvrNVFFQNIImrnvknpilidqnycpnnqgcpnknsgvkisqvtyrniqgtsatpkavafdcsssnpcrgiklqdIKLTYMNKaatstckniggtisgvimprscl
MAAAKLITISCVVSVFLIFFITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRssqastivvpkgrylIKNAvfrgpcksritvqisgtivapndyralgksdRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIApaespntdgihvesstgvtitggtiqtgddcISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTltnsvftgsdngvrikswarpsrsfVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMNKAATstckniggtisgvimprscl
MAAAKLITISCVVSVFLIFFITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESStgvtitggtiqtgDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMNKAATSTCKNIGGTISGVIMPRSCL
****KLITISCVVSVFLIFFITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMNKAATSTCKNIGGTISGVI******
****KLITISCVVSVFLIFFITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSI**L**DLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMNKAATSTCKNIGGTISGVIMPRSCL
MAAAKLITISCVVSVFLIFFITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMNKAATSTCKNIGGTISGVIMPRSCL
*AAAKLITISCVVSVFLIFFITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMNKAATSTCKNIGGTISGVIMPRSCL
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAAKLITISCVVSVFLIFFITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMNKAATSTCKNIGGTISGVIMPRSCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query392 2.2.26 [Sep-21-2011]
P48979393 Polygalacturonase OS=Prun N/A no 0.969 0.966 0.523 1e-119
O22818405 Probable polygalacturonas no no 0.931 0.901 0.509 1e-105
Q39786407 Polygalacturonase OS=Goss N/A no 0.951 0.916 0.426 6e-84
Q39766407 Polygalacturonase OS=Goss N/A no 0.951 0.916 0.421 5e-83
O23147431 Polygalacturonase ADPG1 O no no 0.923 0.839 0.410 2e-77
P24548362 Exopolygalacturonase (Fra N/A no 0.887 0.961 0.436 2e-77
P48978460 Polygalacturonase OS=Malu N/A no 0.910 0.776 0.417 2e-76
P49062422 Exopolygalacturonase clon no no 0.900 0.836 0.403 6e-76
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.918 0.820 0.420 8e-76
Q94AJ5444 Probable polygalacturonas no no 0.920 0.813 0.415 9e-76
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1 Back     alignment and function desciption
 Score =  428 bits (1101), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/384 (52%), Positives = 272/384 (70%), Gaps = 4/384 (1%)

Query: 13  VSVFLIFFI--TLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGR 70
           +S+  +F I   +++  +YNV + GAK DG+TDST++FL AWA AC S     I VP G 
Sbjct: 10  LSLIFVFMINSAIASPLTYNVASLGAKADGKTDSTKAFLSAWAKACASMNPGVIYVPAGT 69

Query: 71  YLIKNAVFRGPCKSR-ITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKG 129
           + +++ VF GPCK+  IT +I+GT+VAP+DYR +G +  WI F  V+ ++I GG LDG+G
Sbjct: 70  FFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTISGGILDGQG 129

Query: 130 AGFWACRK-SGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFI 188
              WAC+   G +CP G  ++  + +NN++VSGL S+NSQ+ H+VI+   NV ++ V+  
Sbjct: 130 TALWACKACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQGVRVS 189

Query: 189 APAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSL 248
               SPNTDGIHV+ S+GVTI    I TGDDC+S+G GT NL +  + CGPGHG+SIGSL
Sbjct: 190 RSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGISIGSL 249

Query: 249 GKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQ 308
           GK+  E GV+NVT+    F+G+ NG+RIKSW RPS  F RN+ FQ+  M NV+NPI+IDQ
Sbjct: 250 GKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPIVIDQ 309

Query: 309 NYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMN 368
           +YCP+N+GCP + SGV+IS VTY +I GTSAT  AV FDCS  +PCR IKL+D+KLTY N
Sbjct: 310 HYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKLTYKN 369

Query: 369 KAATSTCKNIGGTISGVIMPRSCL 392
           +AA S+C +  GT  GV+ P SCL
Sbjct: 370 QAAESSCSHADGTTEGVVQPTSCL 393
Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 Back     alignment and function description
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P24548|PGLR_OENOR Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|P49062|PGLR1_ARATH Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
224117798390 predicted protein [Populus trichocarpa] 0.992 0.997 0.750 1e-174
255576408388 Polygalacturonase precursor, putative [R 0.987 0.997 0.748 1e-167
224117794390 predicted protein [Populus trichocarpa] 0.969 0.974 0.759 1e-165
224092830390 predicted protein [Populus trichocarpa] 0.992 0.997 0.696 1e-165
255576410388 Polygalacturonase precursor, putative [R 0.987 0.997 0.712 1e-164
255576412387 Polygalacturonase precursor, putative [R 0.984 0.997 0.750 1e-164
147783619389 hypothetical protein VITISV_035657 [Viti 0.966 0.974 0.728 1e-161
359478302469 PREDICTED: polygalacturonase [Vitis vini 0.966 0.808 0.728 1e-161
15224383392 putative polygalacturonase /pectinase [A 0.971 0.971 0.679 1e-158
449452150392 PREDICTED: polygalacturonase-like [Cucum 0.997 0.997 0.670 1e-158
>gi|224117798|ref|XP_002331634.1| predicted protein [Populus trichocarpa] gi|222874030|gb|EEF11161.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 292/389 (75%), Positives = 340/389 (87%)

Query: 4   AKLITISCVVSVFLIFFITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQAST 63
           AK +    V+ +F  F  + + +ASYNVI FGAKPDG+TDSTQ FL+AW+ AC S+  ST
Sbjct: 2   AKFVVSYVVLFLFCTFQQSNAASASYNVIKFGAKPDGKTDSTQPFLKAWSAACGSASPST 61

Query: 64  IVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGG 123
           I VPKGRYL+K  VFRGPCK++ITVQI GT+VAP DYRALG S  WILFIKV+R+S+ GG
Sbjct: 62  INVPKGRYLLKATVFRGPCKNKITVQIDGTLVAPTDYRALGNSGYWILFIKVNRVSVFGG 121

Query: 124 TLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVR 183
           TLD KGAGFWACRKSG+NCPVG RSIT N AN++++SGLTSINSQ  HLVI+SCNNV+VR
Sbjct: 122 TLDAKGAGFWACRKSGQNCPVGARSITFNWANDILISGLTSINSQSMHLVINSCNNVLVR 181

Query: 184 NVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGV 243
           NV+ IAP +SPNTDGIHV++STGVTITG T+QTGDDCIS+G  TRN+ MS+IKCGPGHG+
Sbjct: 182 NVRVIAPDQSPNTDGIHVQTSTGVTITGSTLQTGDDCISIGPSTRNMLMSSIKCGPGHGI 241

Query: 244 SIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNP 303
           SIGSLGKD NE GVEN+TLTNS+F+GSDNGVRIKSWARPS  FVRNV FQN+IM+NV+NP
Sbjct: 242 SIGSLGKDFNEGGVENITLTNSIFSGSDNGVRIKSWARPSNGFVRNVVFQNLIMKNVRNP 301

Query: 304 ILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIK 363
           I++DQNYCPNNQGCP ++SGVKISQVTYRNIQGTSA+P+AV FDCSSSNPCRGIKLQDIK
Sbjct: 302 IIVDQNYCPNNQGCPRQSSGVKISQVTYRNIQGTSASPEAVTFDCSSSNPCRGIKLQDIK 361

Query: 364 LTYMNKAATSTCKNIGGTISGVIMPRSCL 392
           LTYMN AATS+CKNIGGT SGV+MP SC+
Sbjct: 362 LTYMNTAATSSCKNIGGTSSGVLMPESCI 390

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255576408|ref|XP_002529096.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531447|gb|EEF33280.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224117794|ref|XP_002331633.1| predicted protein [Populus trichocarpa] gi|222874029|gb|EEF11160.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224092830|ref|XP_002309713.1| predicted protein [Populus trichocarpa] gi|222852616|gb|EEE90163.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255576410|ref|XP_002529097.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531448|gb|EEF33281.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255576412|ref|XP_002529098.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531449|gb|EEF33282.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147783619|emb|CAN68140.1| hypothetical protein VITISV_035657 [Vitis vinifera] gi|296084360|emb|CBI24748.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359478302|ref|XP_002275740.2| PREDICTED: polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
>gi|15224383|ref|NP_181917.1| putative polygalacturonase /pectinase [Arabidopsis thaliana] gi|3212847|gb|AAC23398.1| putative polygalacturonase [Arabidopsis thaliana] gi|67633606|gb|AAY78727.1| putative polygalacturonase/pectinase [Arabidopsis thaliana] gi|330255247|gb|AEC10341.1| putative polygalacturonase /pectinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449452150|ref|XP_004143823.1| PREDICTED: polygalacturonase-like [Cucumis sativus] gi|449525056|ref|XP_004169536.1| PREDICTED: polygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
TAIR|locus:2051764392 AT2G43890 [Arabidopsis thalian 0.971 0.971 0.666 2e-143
TAIR|locus:2031953394 AT1G05650 [Arabidopsis thalian 0.956 0.951 0.623 3.9e-131
TAIR|locus:2031963394 AT1G05660 [Arabidopsis thalian 0.956 0.951 0.610 1.7e-128
TAIR|locus:2043894394 AT2G43880 [Arabidopsis thalian 0.992 0.987 0.539 2.6e-118
TAIR|locus:2043924384 AT2G43870 [Arabidopsis thalian 0.974 0.994 0.531 5e-115
TAIR|locus:2080422388 AT3G59850 [Arabidopsis thalian 0.969 0.979 0.527 1e-114
TAIR|locus:2034131397 AT1G65570 [Arabidopsis thalian 0.977 0.964 0.468 3.5e-98
TAIR|locus:2043974405 AT2G43860 [Arabidopsis thalian 0.974 0.943 0.474 9.4e-98
TAIR|locus:2054396433 PGAZAT "polygalacturonase absc 0.915 0.829 0.407 1.7e-73
TAIR|locus:2103478431 ADPG1 [Arabidopsis thaliana (t 0.923 0.839 0.402 2.2e-73
TAIR|locus:2051764 AT2G43890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1402 (498.6 bits), Expect = 2.0e-143, P = 2.0e-143
 Identities = 258/387 (66%), Positives = 313/387 (80%)

Query:    12 VVSVFLIFFITL-----SNAAS-YNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIV 65
             +V+V L+FF +      S AAS YNV++FGAKPDGRTDST++FL AW  ACRS+ A T+ 
Sbjct:     6 LVAVLLMFFSSFLLMKSSTAASNYNVVSFGAKPDGRTDSTKAFLGAWQAACRSAAAVTVT 65

Query:    66 VPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTL 125
             VP+G +L+K   FRGPC+SRIT QI GTIVAP+DYR LG S  WILF+KV+R+SIIGGTL
Sbjct:    66 VPRGSFLLKPVEFRGPCRSRITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISIIGGTL 125

Query:   126 DGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNV 185
             D +GA FWACRKSG++CPVG RS+T N AN+V+VSGLTSINSQ +HLVI+SCNNVIVR V
Sbjct:   126 DARGASFWACRKSGKSCPVGARSMTFNWANDVVVSGLTSINSQTTHLVINSCNNVIVRKV 185

Query:   186 KFIAPAESPNTDGIHVESSXXXXXXXXXXXXXDDCISVGRGTRNLHMSNIKCGPGHGVSI 245
             K +AP +SPNTDG+HV+ S             DDCIS+G GTRNL+MS + CGPGHG+SI
Sbjct:   186 KLVAPDQSPNTDGLHVQGSAGVTVTDGTFHTGDDCISIGPGTRNLYMSKLNCGPGHGISI 245

Query:   246 GSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPIL 305
             GSLG+D NE GVEN+TL NSVF+GSDNGVRIK+WAR S  FVRNV FQN+IM+NV+NPI+
Sbjct:   246 GSLGRDANEAGVENITLINSVFSGSDNGVRIKTWARQSTGFVRNVLFQNLIMKNVQNPII 305

Query:   306 IDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLT 365
             +DQNYCP+NQGCP + SGVKISQV YRNIQGTS T +A+ FDCS SNPC+ I+L DIKLT
Sbjct:   306 VDQNYCPSNQGCPKQGSGVKISQVVYRNIQGTSRTQQALTFDCSRSNPCQAIRLHDIKLT 365

Query:   366 YMNKAATSTCKNIGGTISGVIMPRSCL 392
             +  ++ATSTCKNI G  +GV+MP+ CL
Sbjct:   366 FNGRSATSTCKNIKGVKAGVVMPQGCL 392
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2031953 AT1G05650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031963 AT1G05660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043894 AT2G43880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043924 AT2G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080422 AT3G59850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034131 AT1G65570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043974 AT2G43860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054396 PGAZAT "polygalacturonase abscission zone A. thaliana" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103478 ADPG1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P48979PGLR_PRUPE3, ., 2, ., 1, ., 1, 50.52340.96930.9669N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.150.946
3rd Layer3.2.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01700083
hypothetical protein (390 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-177
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-106
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-101
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 2e-95
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 8e-92
PLN03010409 PLN03010, PLN03010, polygalacturonase 2e-86
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 4e-82
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 3e-22
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 7e-07
pfam05048238 pfam05048, NosD, Periplasmic copper-binding protei 0.003
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information 
 Score =  497 bits (1281), Expect = e-177
 Identities = 244/380 (64%), Positives = 305/380 (80%), Gaps = 5/380 (1%)

Query: 17  LIFFITLSNAAS--YNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIK 74
           L+ FI +S++AS  +NV++FGAKPDG TDST +FL+AW  AC S+ ++T+VVP G +L+K
Sbjct: 14  LLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLK 73

Query: 75  NAVFRGPCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWA 134
              F GPCKS+IT Q++GT+VAP DYR  G S  WILF KV+R S++GGT D +  GFW+
Sbjct: 74  VITFGGPCKSKITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWS 133

Query: 135 CRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESP 194
           CRKSG+NCP G RSI+ NSA +VI+SG+ S+NSQ+SH+ ++ C NV+VRNVK +AP  SP
Sbjct: 134 CRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSP 193

Query: 195 NTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNE 254
           NTDG HV+ STGVT TG T+QTGDDC+++G GTRN  ++ + CGPGHGVSIGSL K+LNE
Sbjct: 194 NTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNE 253

Query: 255 DGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNN 314
           DGVENVT+++SVFTGS NGVRIKSWARPS  FVRNVFFQ+++M+NV+NPI+IDQNYCP +
Sbjct: 254 DGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTH 313

Query: 315 QGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMNKA--AT 372
           +GCPN+ SGVKISQVTY+NIQGTSAT +A+   CS S+PC GI LQDIKLTY NK   AT
Sbjct: 314 EGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTY-NKGTPAT 372

Query: 373 STCKNIGGTISGVIMPRSCL 392
           S C N  G   GVI P SCL
Sbjct: 373 SFCFNAVGKSLGVIQPTSCL 392

Length = 394
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information
>gnl|CDD|218400 pfam05048, NosD, Periplasmic copper-binding protein (NosD) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 392
PLN02155394 polygalacturonase 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03010409 polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.95
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.88
PLN02793443 Probable polygalacturonase 99.84
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.83
PLN03003456 Probable polygalacturonase At3g15720 99.83
PLN02218431 polygalacturonase ADPG 99.82
PLN03010409 polygalacturonase 99.82
PLN02155394 polygalacturonase 99.81
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.8
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.79
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.71
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.37
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.33
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 99.18
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.98
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.71
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.68
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.65
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 98.6
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.57
PLN02497331 probable pectinesterase 98.54
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.53
PLN02480343 Probable pectinesterase 98.48
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.47
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.44
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.43
PLN02176340 putative pectinesterase 98.37
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.34
PLN02665366 pectinesterase family protein 98.33
PLN02682369 pectinesterase family protein 98.3
PLN02773317 pectinesterase 98.27
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.27
PLN02634359 probable pectinesterase 98.21
PLN02671359 pectinesterase 98.16
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.13
smart00656190 Amb_all Amb_all domain. 98.09
PLN02170529 probable pectinesterase/pectinesterase inhibitor 98.09
PLN02304379 probable pectinesterase 97.95
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.93
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.93
PLN02916502 pectinesterase family protein 97.91
PLN02432293 putative pectinesterase 97.91
smart00656190 Amb_all Amb_all domain. 97.88
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.86
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.85
PRK10531422 acyl-CoA thioesterase; Provisional 97.85
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.83
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.81
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.78
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.77
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.77
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.76
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.74
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.72
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.71
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.7
PLN02301548 pectinesterase/pectinesterase inhibitor 97.69
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.65
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.64
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.64
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.6
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.59
PLN02314586 pectinesterase 97.57
PLN02197588 pectinesterase 97.38
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.13
PF1221867 End_N_terminal: N terminal extension of bacterioph 96.51
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 96.38
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.17
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.6
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.1
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 94.25
PLN02480343 Probable pectinesterase 93.69
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.32
PLN02176340 putative pectinesterase 91.09
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 91.03
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 90.93
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 90.62
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 89.59
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 88.89
PLN02468565 putative pectinesterase/pectinesterase inhibitor 88.78
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 88.78
PRK10531422 acyl-CoA thioesterase; Provisional 88.69
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 86.29
PLN02197588 pectinesterase 86.25
PLN02773317 pectinesterase 85.96
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 85.94
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 85.17
PLN02313587 Pectinesterase/pectinesterase inhibitor 82.28
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 81.89
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 80.45
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.7e-79  Score=593.18  Aligned_cols=391  Identities=61%  Similarity=1.070  Sum_probs=351.5

Q ss_pred             CchhhhHHHHHHHHHHHHhhhhccCCceeEEeecCccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCceEEEEEEEeeC
Q 046411            1 MAAAKLITISCVVSVFLIFFITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRG   80 (392)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l~~   80 (392)
                      |.+.-+.+.+++.+|.+. .++..+++.+||+||||++||.+|||+|||+|+++||++.+|++|+||+|+|++++|.|.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~g   79 (394)
T PLN02155          1 MTKSAITFPLLFTLLTFI-DVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGG   79 (394)
T ss_pred             CccceeehhHHHHHHHHh-hccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcc
Confidence            444444444444433333 2445667899999999999999999999999997679998999999999999999999999


Q ss_pred             CCCcceEEEEeeEEEecCCccccCCCCcEEEEEeeeEEEEEccEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEE
Q 046411           81 PCKSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVS  160 (392)
Q Consensus        81 ~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~  160 (392)
                      ||||+++|+++|+|+++.++..|.....|+.+.+.+|+.|.||+|||+|+.||.....+...+.+|+++.|.+|++++|+
T Consensus        80 pcksnv~l~l~G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~  159 (394)
T PLN02155         80 PCKSKITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIIS  159 (394)
T ss_pred             cCCCCceEEEeeEEECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEE
Confidence            99999999999999999888878665679999999999999999999999999876554555678899999999999999


Q ss_pred             eEEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecC
Q 046411          161 GLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPG  240 (392)
Q Consensus       161 ~v~i~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~  240 (392)
                      +++++|+|.|++++..|+|++|++++|.++.+++|+||||+..|+||+|+||+|.++||||+++++++||+|+||.|..+
T Consensus       160 gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~G  239 (394)
T PLN02155        160 GVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPG  239 (394)
T ss_pred             CeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECC
Confidence            99999999999999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             ceeEEeeccccCCCCCeEeEEEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEecCCccEEEEeecCCCCCCCCCC
Q 046411          241 HGVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNK  320 (392)
Q Consensus       241 ~gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~  320 (392)
                      ||++|||+|++...+.++||+++||++.++.+|++||+|.+.++|.|+||+|+|++|+++++||.|.+.|++....|+..
T Consensus       240 hGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~  319 (394)
T PLN02155        240 HGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNE  319 (394)
T ss_pred             ceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCC
Confidence            99999999877557889999999999999999999999976578999999999999999999999999998755556655


Q ss_pred             CCceeEEeEEEEeEEEEeCCCceEEEeeCCCCceecEEEEeEEEEecC-CccceeeecccccccceecCCCCC
Q 046411          321 NSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLTYMN-KAATSTCKNIGGTISGVIMPRSCL  392 (392)
Q Consensus       321 ~~~~~i~nitf~ni~~~~~~~~~~~i~~~~~~~i~~i~f~ni~i~~~~-~~~~~~c~~~~~~~~~~~~~~~~~  392 (392)
                      .+.+.|+||+|+||+++.....++.+.|++..||+||+|+||+++..+ .++..+|++++|...++.+|+.||
T Consensus       320 ~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~  392 (394)
T PLN02155        320 YSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCL  392 (394)
T ss_pred             CCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCccccc
Confidence            667899999999999998766789999999999999999999999875 556889999999999999999997

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 5e-17
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 4e-15
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 1e-13
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 2e-13
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 6e-13
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 2e-11
1nhc_A336 Structural Insights Into The Processivity Of Endopo 4e-11
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 6e-09
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 1e-06
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 128/282 (45%), Gaps = 42/282 (14%)
Query: 107 DRWILFIKVDRLSIIG-GTLDGKGA--------GFWA------CRKSGRNCPVGTRSITI 151
           D +I  +      I G GT+DG+G          +W        +K  +N P   R I I
Sbjct: 100 DAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTP---RLIQI 156
Query: 152 NSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSXXXXXXX 211
           N + N  +  ++ INS   H+V S  +           P+ + NTDGI   SS       
Sbjct: 157 NKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAY 216
Query: 212 XXXXXXDDCISV----GRG-TRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSV 266
                 DD +++    GR  TRN+ + +   G GHG+SIGS        GV NVT+ +  
Sbjct: 217 SNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLK 271
Query: 267 FTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKI 326
             G+ NG+RIKS  + +   V  V + N++M+NV  PI+ID  Y         K  G  +
Sbjct: 272 MNGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVY--------EKKEGSNV 322
Query: 327 ---SQVTYRNIQGTSATPKAVAFDCSSSNPCRGIKLQDIKLT 365
              S +T++++  TS T   V  +  ++     + ++++KLT
Sbjct: 323 PDWSDITFKDV--TSETKGVVVLNGENAKKPIEVTMKNVKLT 362
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-116
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-112
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-104
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 7e-99
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 2e-96
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 4e-95
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 4e-93
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 4e-92
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 1e-91
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 4e-84
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 6e-35
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 3e-33
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 3e-27
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 1e-25
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 3e-14
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 2e-12
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 1e-11
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 1e-09
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 1e-06
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 1e-04
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  343 bits (882), Expect = e-116
 Identities = 81/378 (21%), Positives = 142/378 (37%), Gaps = 35/378 (9%)

Query: 24  SNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAV-FRGPC 82
               + N++++GA  D  TD   +   AWA AC+S     + +P G Y +   V   G  
Sbjct: 16  GATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSG--GLVYIPSGNYALNTWVTLTGGS 72

Query: 83  KSRITVQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIG----GTLDGKGAGFWACRKS 138
                +Q+ G I           S   I         +      G + G G  + A    
Sbjct: 73  A--TAIQLDGIIYRTGTA-----SGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHA---- 121

Query: 139 GRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDG 198
                 G R + +    +  V  +  +++   H  + +C++  V N+           DG
Sbjct: 122 --EGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDG 178

Query: 199 IHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVE 258
           I V  S  + +    +   D+C++V     N+ + +I C    G ++GSLG D     V 
Sbjct: 179 IDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---TDVT 234

Query: 259 NVTLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCP 318
           ++   N     S+    IKS        V NV  +N I       + ID  +        
Sbjct: 235 DIVYRNVYTWSSNQMYMIKSN--GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAG 292

Query: 319 NKNSGVKISQVTYRNIQGTS---ATPKAVAFDCSSSNPCRGIKLQDIKLTYMN-KAATST 374
               GV+++ +T +N +GT    AT   +   CS + PC  + L+DI +   +  +    
Sbjct: 293 ---DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYL 349

Query: 375 CKNIGGTISGVIMPRSCL 392
           C++  G+   +    S  
Sbjct: 350 CRSAYGSGYCLKDSSSHT 367
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.92
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.92
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.88
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.88
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.88
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.87
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.87
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.85
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.85
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.84
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.83
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.78
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.77
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.62
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.47
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.45
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.42
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.34
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.31
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.3
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.25
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.25
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.7
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.56
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.56
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.52
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.49
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.49
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.48
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.46
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.45
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.34
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.32
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.32
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.23
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.21
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.18
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.15
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.11
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.07
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.07
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.86
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.76
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.75
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.73
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.7
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.65
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.65
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.57
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.5
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.33
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.24
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.61
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 96.42
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.9
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 95.83
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 95.78
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.68
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 94.04
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.64
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 92.77
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 83.68
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 81.95
3riq_A 543 Tailspike protein; right handed beta-helix, endorh 80.81
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=5.3e-64  Score=496.57  Aligned_cols=330  Identities=26%  Similarity=0.406  Sum_probs=294.9

Q ss_pred             hhccCCceeEEeecCccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCceEEEEEEEeeCCCCcceEEEEeeEEEecCCc
Q 046411           21 ITLSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAVFRGPCKSRITVQISGTIVAPNDY  100 (392)
Q Consensus        21 ~~~~~~~~~~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~  100 (392)
                      ....+++.++|+||||++||.+|||+|||+||++ |++.+|++|+||+|+|++++|.|    ||+++|+++|+|++++++
T Consensus        20 ~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~-c~~~ggg~v~vP~G~yl~~~l~l----~s~v~l~l~gtL~~s~d~   94 (448)
T 3jur_A           20 EPQIPDREVNLLDFGARGDGRTDCSESFKRAIEE-LSKQGGGRLIVPEGVFLTGPIHL----KSNIELHVKGTIKFIPDP   94 (448)
T ss_dssp             CCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHHH-HHHHTCEEEEECSSEEEESCEEC----CTTEEEEESSEEEECCCG
T ss_pred             CCCCCCcEEEEEecccCCCCCeecHHHHHHHHHh-hhhcCCeEEEECCCcEEEeeeEe----CCCcEEEEEEEEEecCCH
Confidence            3345678999999999999999999999999985 67778899999999999999988    599999999999999998


Q ss_pred             ccc-CC------------CCcEEEEEeeeEEEEEc-cEEeCCC--CceeeccCC--------------------------
Q 046411          101 RAL-GK------------SDRWILFIKVDRLSIIG-GTLDGKG--AGFWACRKS--------------------------  138 (392)
Q Consensus       101 ~~~-~~------------~~~~i~~~~~~nv~I~G-G~idg~g--~~~~~~~~~--------------------------  138 (392)
                      .+| +.            ..+||.+.+++||+|.| |+|||+|  +.||.....                          
T Consensus        95 ~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  174 (448)
T 3jur_A           95 ERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERG  174 (448)
T ss_dssp             GGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHHT
T ss_pred             HHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhccc
Confidence            888 21            24689999999999999 9999999  899974321                          


Q ss_pred             --------CCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeccccEEEE
Q 046411          139 --------GRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGVTIT  210 (392)
Q Consensus       139 --------~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~  210 (392)
                              +.....||++|.|.+|+|++|++++++++|.|++++..|+|++|++++|.++  ++|+|||++.+|+||+|+
T Consensus       175 ~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~  252 (448)
T 3jur_A          175 TPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIE  252 (448)
T ss_dssp             CCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEE
T ss_pred             CcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEE
Confidence                    0123578999999999999999999999999999999999999999999986  589999999999999999


Q ss_pred             ceEEecCCceEEeCCC-----------ceeEEEEeeEE--ecCc-eeEEeeccccCCCCCeEeEEEEeeEEeCCceeEEE
Q 046411          211 GGTIQTGDDCISVGRG-----------TRNLHMSNIKC--GPGH-GVSIGSLGKDLNEDGVENVTLTNSVFTGSDNGVRI  276 (392)
Q Consensus       211 n~~i~~~dD~i~~~~~-----------s~ni~I~n~~~--~~~~-gi~iGs~~~~~~~~~i~ni~i~n~~~~~~~~gi~i  276 (392)
                      ||+|.++||||+++++           ++||+|+||+|  ..+| |++|||++    .+.++||+|+||++.++.+|++|
T Consensus       253 n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~GirI  328 (448)
T 3jur_A          253 KCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERALRL  328 (448)
T ss_dssp             SCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEEEEE
T ss_pred             eeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccceEEE
Confidence            9999999999999987           89999999999  5566 79999983    57899999999999999999999


Q ss_pred             EeecCCCCeeEEceEEEEEEEecCCccE-EEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeCCCceEEEeeCCCCcee
Q 046411          277 KSWARPSRSFVRNVFFQNIIMRNVKNPI-LIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSATPKAVAFDCSSSNPCR  355 (392)
Q Consensus       277 ~~~~~~~~g~i~nI~~~ni~i~~~~~~i-~i~~~~~~~~~~~~~~~~~~~i~nitf~ni~~~~~~~~~~~i~~~~~~~i~  355 (392)
                      |++++ .+|.|+||+|+|++|+++.+|+ .|++.|+..   +  +...+.|+||+|+||+++. ...++.|.|.++.+|+
T Consensus       329 Kt~~g-~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~---~--~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~p~~  401 (448)
T 3jur_A          329 KTNSR-RGGYMENIFFIDNVAVNVSEEVIRINLRYDNE---E--GEYLPVVRSVFVKNLKATG-GKYAVRIEGLENDYVK  401 (448)
T ss_dssp             ECCTT-TCSEEEEEEEESCEEEEESSEEEEEESCGGGC---C--CSCCCEEEEEEEESCEEEE-CSEEEEEECBTTBCEE
T ss_pred             EEEcC-CCceEeeEEEEEEEEECCccccEEEEeeccCC---C--CCCCceEEEEEEEeEEEEe-cceEEEEEeCCCCCEe
Confidence            99864 6699999999999999999988 999988753   1  2345699999999999998 4689999999999999


Q ss_pred             cEEEEeEEEEecC
Q 046411          356 GIKLQDIKLTYMN  368 (392)
Q Consensus       356 ~i~f~ni~i~~~~  368 (392)
                      ||+|+||++++..
T Consensus       402 ~I~~~nv~i~~~~  414 (448)
T 3jur_A          402 DILISDTIIEGAK  414 (448)
T ss_dssp             EEEEEEEEEESCS
T ss_pred             eEEEEEEEEEccc
Confidence            9999999999754
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 392
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 4e-81
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-76
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 6e-73
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-65
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 2e-62
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 5e-61
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-60
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-54
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 5e-07
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 3e-06
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 7e-05
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 2e-04
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  253 bits (646), Expect = 4e-81
 Identities = 80/362 (22%), Positives = 139/362 (38%), Gaps = 27/362 (7%)

Query: 29  YNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKNAV-FRGPCKSRIT 87
            N++++GA  D  TD   +   AWA AC+S     + +P G Y +   V   G       
Sbjct: 21  CNILSYGAVADNSTDVGPAITSAWA-ACKSG--GLVYIPSGNYALNTWVTLTGGSA--TA 75

Query: 88  VQISGTIVAPNDYRALGKSDRWILFIKVDRLSIIGGTLDGKGAGFWACRKSGRNCPVGTR 147
           +Q+ G I           S   I         +   T  G   GF     +      G R
Sbjct: 76  IQLDGIIYRTGT-----ASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHA--EGTYGAR 128

Query: 148 SITINSANNVIVSGLTSINSQLSHLVISSCNNVIVRNVKFIAPAESPNTDGIHVESSTGV 207
            + +    +  V  +  +++   H  + +C++  V N+           DGI V  S  +
Sbjct: 129 ILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWGSN-I 186

Query: 208 TITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENVTLTNSVF 267
            +    +   D+C++V     N+ + +I C    G ++GSLG D     V ++   N   
Sbjct: 187 WVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---TDVTDIVYRNVYT 243

Query: 268 TGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKIS 327
             S+    IKS        V NV  +N I       + ID  +            GV+++
Sbjct: 244 WSSNQMYMIKSN--GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAG---DGVQLN 298

Query: 328 QVTYRNIQGTS---ATPKAVAFDCSSSNPCRGIKLQDIKLTYMN-KAATSTCKNIGGTIS 383
            +T +N +GT    AT   +   CS + PC  + L+DI +   +  +    C++  G+  
Sbjct: 299 NITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGY 358

Query: 384 GV 385
            +
Sbjct: 359 CL 360
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.85
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.83
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.82
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.8
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.8
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.75
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.7
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.61
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.59
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.56
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.42
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.32
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.21
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.94
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.82
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.72
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.63
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.56
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.54
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.35
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.26
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.24
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.19
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.74
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.4
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.67
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 95.63
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.2
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 92.96
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 92.93
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 86.21
d1tywa_554 P22 tailspike protein {Salmonella phage P22 [TaxId 81.95
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=9.1e-61  Score=469.40  Aligned_cols=337  Identities=23%  Similarity=0.389  Sum_probs=290.4

Q ss_pred             ccCCceeEEeecCccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCceEEEEE-EEeeCCCCcceEEEEeeEEEecCCcc
Q 046411           23 LSNAASYNVITFGAKPDGRTDSTQSFLRAWAVACRSSQASTIVVPKGRYLIKN-AVFRGPCKSRITVQISGTIVAPNDYR  101 (392)
Q Consensus        23 ~~~~~~~~v~d~Ga~~dg~tD~t~Aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~-l~l~~~~ks~v~l~~~G~l~~~~~~~  101 (392)
                      .++.+++||+||||+|||++|||+|||+|++ ||+  +|++|+||+|+|++.+ +.|.++  +++.|+++|+|+...+..
T Consensus        15 ~~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~--~gg~V~iP~Gty~l~~~i~l~g~--~~~~l~~~G~i~~~~~~~   89 (422)
T d1rmga_          15 KGATKTCNILSYGAVADNSTDVGPAITSAWA-ACK--SGGLVYIPSGNYALNTWVTLTGG--SATAIQLDGIIYRTGTAS   89 (422)
T ss_dssp             HHHHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT--BTCEEEECSSEEEECSCEEEESC--EEEEEEECSEEEECCCCS
T ss_pred             cCCCcEEEEecCCCCCCCCccCHHHHHHHHH-hcC--CCCEEEECCCcEEEeCcEEEcCC--CceEEEEeEEEEeccCCc
Confidence            3456799999999999999999999999997 464  4789999999998765 888876  789999999998876544


Q ss_pred             ccCCCCcEEEEEeeeEEEEEc-cEEeCCCCceeeccCCCCCCCCCceEEEEEeeCceEEEeEEEecCCccEEEEeceecE
Q 046411          102 ALGKSDRWILFIKVDRLSIIG-GTLDGKGAGFWACRKSGRNCPVGTRSITINSANNVIVSGLTSINSQLSHLVISSCNNV  180 (392)
Q Consensus       102 ~~~~~~~~i~~~~~~nv~I~G-G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~nv  180 (392)
                      .+.  ..+....+.+.+.+.| |+|||+|+.||.      ....+|.++.|.+|+|++|+++++++++.|++.+..|+++
T Consensus        90 ~~~--~~~~~~~~~~~~~~~g~G~IdG~G~~~~~------~~~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~v  161 (422)
T d1rmga_          90 GNM--IAVTDTTDFELFSSTSKGAVQGFGYVYHA------EGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDG  161 (422)
T ss_dssp             SEE--EEEEEEEEEEEECSSSCCEEECCTHHHHT------TTCCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEEE
T ss_pred             cCE--EEeccCccEEEEEeecceEEecCcceecC------CCCCCCcEEEEEeeeeeEEECcEecCCCceEEEEeccccE
Confidence            321  1233334455566677 999999999994      3355789999999999999999999999999999999999


Q ss_pred             EEEeEEEECCCCCCCCCeeeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEecCceeEEeeccccCCCCCeEeE
Q 046411          181 IVRNVKFIAPAESPNTDGIHVESSTGVTITGGTIQTGDDCISVGRGTRNLHMSNIKCGPGHGVSIGSLGKDLNEDGVENV  260 (392)
Q Consensus       181 ~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~I~n~~~~~~~gi~iGs~~~~~~~~~i~ni  260 (392)
                      +|+|++|.++ +.+|+||||+.+ +||+|+||+|.++||||+++++++||+|+|++|..+||++||+++.   ...++||
T Consensus       162 ~i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~---~~~V~nV  236 (422)
T d1rmga_         162 EVYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDI  236 (422)
T ss_dssp             EEEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT---TEEEEEE
T ss_pred             EEEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC---CCCEEEE
Confidence            9999999986 467999999976 5899999999999999999999999999999999999999999864   3469999


Q ss_pred             EEEeeEEeCCceeEEEEeecCCCCeeEEceEEEEEEEecCCccEEEEeecCCCCCCCCCCCCceeEEeEEEEeEEEEeC-
Q 046411          261 TLTNSVFTGSDNGVRIKSWARPSRSFVRNVFFQNIIMRNVKNPILIDQNYCPNNQGCPNKNSGVKISQVTYRNIQGTSA-  339 (392)
Q Consensus       261 ~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nitf~ni~~~~~-  339 (392)
                      +|+||++.++..+++||++.  +.|.|+||+|+|++++++++||.|++.|++....   ......|+||+|+||+++.. 
T Consensus       237 ~v~n~~~~~s~~g~~ik~~~--g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~---~~~~v~isnIt~~Ni~GT~~~  311 (422)
T d1rmga_         237 VYRNVYTWSSNQMYMIKSNG--GSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV---AGDGVQLNNITVKNWKGTEAN  311 (422)
T ss_dssp             EEEEEEEESSSCSEEEEEBB--CCEEEEEEEEEEEEEEEESCSEEEETBCTTSCCB---SSSCCEEEEEEEEEEEEEESC
T ss_pred             EEEeEEEeCCCceEEEEEcC--CCceecceEEEEEEEecccccEEEecccCCCCCC---CCCCeEEEEEEEEeEEEEecC
Confidence            99999999999999999873  5689999999999999999999999999753322   23467899999999999874 


Q ss_pred             --CCceEEEeeCCCCceecEEEEeEEEEecC-Cccceeeecccccc
Q 046411          340 --TPKAVAFDCSSSNPCRGIKLQDIKLTYMN-KAATSTCKNIGGTI  382 (392)
Q Consensus       340 --~~~~~~i~~~~~~~i~~i~f~ni~i~~~~-~~~~~~c~~~~~~~  382 (392)
                        .+.++.+.|++..||+||+|+||+|..++ ..+.+.|++++|+.
T Consensus       312 ~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~~~~~~C~na~G~~  357 (422)
T d1rmga_         312 GATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSG  357 (422)
T ss_dssp             TTTSCSEEEECBTTBCEEEEEEEEEEEEESSSSCEEEEEESEEEES
T ss_pred             CcccccEEEEcCCCCCCcceEEEEEEEEcCCCCCcceEEECceeeE
Confidence              34689999999999999999999998866 66678999999864
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure