Citrus Sinensis ID: 046419

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-----
Protein Sequence
MLLGNSNGEQLESGVGGLNVSDGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQHQHQHQNHQQSSHSHHSYHSQPSTPTTPTSSFSFPIAATTPTTPTGGHHQHHSLHHHFPPPCYSRSPTPSSLPPTPPPLSPGLRSPHQPAFPTLTLFDTNTNTNANNNSNAANSSVMSSNNISNTFNMPRTPPLLQNPPRFKRFHSDTSINTFAANQNDINNNNNINSSSSFQGSNNFSMPFLPFFRSPSSPSLLTSPTSNCNTSAFPSATTKLLSHPSFSFGNQNSSAIYRNPDEKECILTSTGSVFNLKPELPSSQSLSQNVNAEILRSKPKEETGGQINMHEDISKLLNVIPSMQVPEWYNDSGEASNCQSSVVTDDNLGLELQQLASILHVDSTTAPGSCSYDNLPGIC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHccHHcccHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHHccccccccccccHHccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHcccccccccccEEccccccHHHHHHHHccccccccccccccccccccccccccccccccccHccccccHHHHHHHHcccccccccHccccccccccccccEcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mllgnsngeqlesgvgglnvsdgsggeggvqlkkgpwtaAEDAILTEYVRKHGEGNWNAVQRNtglarcgkscRLRWanhlrpnlkkgtfspeEERLIVELHAQLGNKWARMAaqlpgrtdneikNYWNTRVKrrhrqglplyppeiqpqhqhqhqhqnhqqsshshhsyhsqpstpttptssfsfpiaattpttptgghhqhhslhhhfpppcysrsptpsslpptppplspglrsphqpafptltlfdtntntnannnsnaanssvmssnnisntfnmprtppllqnpprfkrfhsdtsINTFAanqndinnnnninssssfqgsnnfsmpflpffrspsspslltsptsncntsafpsattkllshpsfsfgnqnssaiyrnpdekeciltstgsvfnlkpelpssqslsqnVNAEilrskpkeetggqinmHEDISKLLnvipsmqvpewyndsgeasncqssvvtddnlGLELQQLASILHvdsttapgscsydnlpgic
Flexible Loop (DISEMBL)
mllgnsngeqlESGVGGLNVSDGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWAnhlrpnlkkgtfspeEERLIVELHAQLGNKWARMaaqlpgrtdneiknYWNTRVKRRHRQGLPLYPPEIQPQHQHQHQHQNHQQSSHSHHSYHSQPSTPTTPTSSFSFPIAATTPTTPTGGHHQHHSLHHHFPPPCYSRSPTPSSLPPTPPPLSPGLRSPHQPAFPTLTLFDTNTNTNANNNSNAANSSVMSSNNISNTFNMPRTPPLLQNPPRFKRFHSDTSINTFAANQNDINNNNNINSSSSFQGSNNFSMPFLPFFRSPSSPSLLTSPTSNCNTSAFPSATTKLLSHPSFSFGNQNSSAIYRNPDEKECILTSTGSVFNLKPelpssqslsqnvNAEILrskpkeetggqiNMHEDISKLLNVIPSMQVPEWYNDSGEASNCQSSVVTDDNLGLELQQLASILhvdsttapgscsydnlpgic
Low Complexity Region (SEG)
MLLGNSNGEQLESGVGGLNVSDGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIqpqhqhqhqhqnhqqsshshhsyhsqpstpttptssfsFPIaattpttptgghhqhhslhhhFPPPCYsrsptpsslpptppplspglrspHQPAFPTLTLFDtntntnannnsnaanssvmssnnisntFNMPRTPPLLQNPPRFKRFHSDTSINTFAAnqndinnnnninssssfqgsnnfsmpflpffrspsspslltsptsNCNTSAFPSATTKLLSHPSFSFGNQNSSAIYRNPDEKECILTSTGSVFNLKPELPSSQSLSQNVNAEILRSKPKEETGGQINMHEDISKLLNVIPSMQVPEWYNDSGEASNCQSSVVTDDNLGLELQQLASILHVDSTTAPGSCSYDNLPGIC
Disordered region (IsUnstruct)
*********************************KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVK*****************************************************************************************************************************************************************************************************************************************************************CILT********************************************ISKLLNVIPSMQVPEWYN**********SVVTDDNLGLELQQLASILHVD*****************
Disordered Region (DISOPRED)
***********************************PWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR*****************************************************************************************************************************************************************************************************************************************************************************************************************KLLNVIP**************************LGLELQQLASILHV*STTAPGSCSYDNLPGIC
Disordered Region (DISEMBL)
MLLGNSNGEQLESGVGGLNVSDGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEI***********************************SFSFPIAATTPT**************HFPPPC**********************SPHQPAFPTLTLFDTNTNTNANNNSNAANSSVMSSNNISNTFNMPRTPPLLQNPPRFKRFHSDTSINTFAANQNDINNNNNINSSSSFQGSNNFSMPFLPFFRSPSSPSLLTSPTSNCNTSAFPSATTKLLSHPSFSFGNQNSSAIYRNPDEKECILTSTGSVFNLKPELPSSQSLSQNVNAEILRSKPKEETGGQINMHEDISKLLNVIPSMQVPEWYNDSGEASNCQSSVVTDDNLGLELQQLASILHVDSTTAPGSCSYDNLPGIC
Disordered Region (DISPRO)
**********************GSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQP****************************************************QHHSLHHHFPPPC********SL*PTPPPLSPGLRSPHQPAFPTLTLFDT****************************************************************************************************************TKLLSHPSFSFGNQNSSAIYRNPDEKECILTSTGSVFNL***********************KEETGGQINMHEDISKLLNVIPSMQVPEWYNDS**************NLGLELQQLASILHVDSTTAPGSCSYDNLPGIC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLGNSNGEQLESGVGGLNVSDGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQHQHQHQNHQQSSHSHHSYHSQPSTPTTPTSSFSFPIAATTPTTPTGGHHQHHSLHHHFPPPCYSRSPTPSSLPPTPPPLSPGLRSPHQPAFPTLTLFDTNTNTNANNNSNAANSSVMSSNNISNTFNMPRTPPLLQNPPRFKRFHSDTSINTFAANQNDINNNNNINSSSSFQGSNNFSMPFLPFFRSPSSPSLLTSPTSNCNTSAFPSATTKLLSHPSFSFGNQNSSAIYRNPDEKECILTSTGSVFNLKPELPSSQSLSQNVNAEILRSKPKEETGGQINMHEDISKLLNVIPSMQVPEWYNDSGEASNCQSSVVTDDNLGLELQQLASILHVDSTTAPGSCSYDNLPGIC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	505	2.2.26 [Sep-21-2011]
Q0JIC2	553	Transcription factor GAMY	yes	no	0.287	0.262	0.681	4e-59
A2WW87	553	Transcription factor GAMY	N/A	no	0.287	0.262	0.681	4e-59
P80073	421	Myb-related protein Pp2 O	N/A	no	0.219	0.263	0.625	3e-38
P81391	205	Myb-related protein 305 O	N/A	no	0.217	0.536	0.581	5e-38
P81396	198	Myb-related protein 340 O	N/A	no	0.291	0.742	0.483	5e-38
Q9S9K9	257	Transcription factor MYB3	no	no	0.205	0.404	0.625	6e-38
Q9SEI0	203	Transcription factor WER	no	no	0.221	0.551	0.562	3e-37
Q9FLR1	336	Transcription factor MYB2	no	no	0.209	0.315	0.605	8e-37
Q9SZP1	282	Transcription repressor M	no	no	0.297	0.531	0.478	1e-36
Q38851	236	Transcription repressor M	no	no	0.291	0.622	0.466	1e-36

>sp|Q0JIC2|GAM1_ORYSJ Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1

 Score =  229 bits (584), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 105/154 (68%), Positives = 122/154 (79%), Gaps = 9/154 (5%)

Query: 9   EQLESGVGGLNVSDGSGGE-----GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRN 63
           EQ++S V      DGS G      GG  LKKGPWT+AEDAIL +YV+KHGEGNWNAVQ+N
Sbjct: 16  EQMDSPV----ADDGSSGGSPHRGGGPPLKKGPWTSAEDAILVDYVKKHGEGNWNAVQKN 71

Query: 64  TGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNE 123
           TGL RCGKSCRLRWANHLRPNLKKG F+ EEERLI++LH+++GNKWARMAA LPGRTDNE
Sbjct: 72  TGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNE 131

Query: 124 IKNYWNTRVKRRHRQGLPLYPPEIQPQHQHQHQH 157
           IKNYWNTR+KR  R GLP+YP  +  Q  ++ Q 
Sbjct: 132 IKNYWNTRIKRCQRAGLPIYPTSVCNQSSNEDQQ 165

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1

 Score =  229 bits (583), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 105/154 (68%), Positives = 122/154 (79%), Gaps = 9/154 (5%)

Query: 9   EQLESGVGGLNVSDGSGGE-----GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRN 63
           EQ++S V      DGS G      GG  LKKGPWT+AEDAIL +YV+KHGEGNWNAVQ+N
Sbjct: 16  EQMDSPV----ADDGSSGGSPHRGGGPPLKKGPWTSAEDAILVDYVKKHGEGNWNAVQKN 71

Query: 64  TGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNE 123
           TGL RCGKSCRLRWANHLRPNLKKG F+ EEERLI++LH+++GNKWARMAA LPGRTDNE
Sbjct: 72  TGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNE 131

Query: 124 IKNYWNTRVKRRHRQGLPLYPPEIQPQHQHQHQH 157
           IKNYWNTR+KR  R GLP+YP  +  Q  ++ Q 
Sbjct: 132 IKNYWNTRIKRCQRAGLPIYPTSVCNQSSNEDQQ 165

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1

 Score =  159 bits (403), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 88/112 (78%), Gaps = 1/112 (0%)

Query: 30  VQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGT 89
           V L++GPWT+ ED  L  ++  +G   W A+ +  GL RCGKSCRLRW N+LRP+LK+G 
Sbjct: 10  VGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGI 69

Query: 90  FSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHR-QGL 140
           FS  EE LI++LHA LGN+W+R+AAQLPGRTDNEIKNYWNTR+K+R R QGL
Sbjct: 70  FSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQGL 121

Possible transcription activator.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|P81391|MYB05_ANTMA Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1

 Score =  159 bits (402), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 87/110 (79%)

Query: 30  VQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGT 89
           V+++KGPWT  ED IL  Y+  HGEG WN++ R+ GL R GKSCRLRW N+LRP++++G 
Sbjct: 11  VEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGN 70

Query: 90  FSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQG 139
            +PEE+ LI+ELHA+ GN+W+++A  LPGRTDNEIKNYW TR+++   QG
Sbjct: 71  ITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQG 120

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P81396|MYB40_ANTMA Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1

 Score =  159 bits (402), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 30  VQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGT 89
           V+++KGPWT  ED IL  ++  HGEG WN + R+ GL R GKSCRLRW N+LRP++++G 
Sbjct: 11  VEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGN 70

Query: 90  FSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWN-TRVKRRHRQGLPLYPPEIQ 148
            +PEE+ LI+ELHA+ GN+W+++A  LPGRTDNEIKNYWN TR+++  +Q    +   I 
Sbjct: 71  ITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIKQAEASFIGHIN 130

Query: 149 PQHQHQHQHQNHQQSS-HSHHSYHSQPST 176
           P+H ++    +   SS H+ H+  S  S+
Sbjct: 131 PEHSNEQASTSLLSSSCHADHAVESYSSS 159

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  159 bits (401), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 84/104 (80%)

Query: 32  LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFS 91
           + KG WT  ED +L +Y+RKHGEG W ++ R  GL RCGKSCRLRW N+LRP+LK+G F+
Sbjct: 12  MNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFT 71

Query: 92  PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
            EE+ LI++LH+ LGNKW+ +A +LPGRTDNEIKNYWNT +KR+
Sbjct: 72  EEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRK 115

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEI0|WER_ARATH Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1

 Score =  156 bits (395), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 86/112 (76%)

Query: 24  SGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83
           SG EG  + KKG WT  ED IL +YV+ HG+G+WN + + TGL RCGKSCRLRW N+L P
Sbjct: 8   SGDEGNNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSP 67

Query: 84  NLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
           N+K+G F+ +EE LI+ LH  LGN+W+ +A ++PGRTDN++KNYWNT + ++
Sbjct: 68  NVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 119

Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLR1|MYB29_ARATH Transcription factor MYB29 OS=Arabidopsis thaliana GN=MYB29 PE=1 SV=1

 Score =  155 bits (391), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 66/109 (60%), Positives = 82/109 (75%), Gaps = 3/109 (2%)

Query: 26  GEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNL 85
           GEG   LKKG WTA ED  L  Y+ +HGEG W  + +  GL RCGKSCRLRWAN+L+P++
Sbjct: 9   GEG---LKKGAWTAEEDKKLISYIHEHGEGGWRDIPQKAGLKRCGKSCRLRWANYLKPDI 65

Query: 86  KKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKR 134
           K+G FS EEE++I+ LHA  GNKW+ +A  LP RTDNEIKNYWNT +K+
Sbjct: 66  KRGEFSYEEEQIIIMLHASRGNKWSVIARHLPKRTDNEIKNYWNTHLKK 114

Plays a minor rheostat role in aliphatic glucosinolates (GLSs) biosynthesis, mostly short chained. Together with MYB28/HAG1 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  155 bits (391), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 101/161 (62%), Gaps = 11/161 (6%)

Query: 34  KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPE 93
           KG WT  ED  L  Y++ HGEG W ++ +  GL RCGKSCRLRW N+LRP+LK+G F+ E
Sbjct: 14  KGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73

Query: 94  EERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQH 153
           E+ LI++LH+ LGNKW+ +A +LPGRTDNEIKNYWNT ++R+      L    I P    
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK------LINRGIDPT--- 124

Query: 154 QHQHQNHQQSSHSHHSYHSQPSTPTTPTSSFSFPIAATTPT 194
              H+  Q+SS S  S  +Q    T+ T + SF  A    T
Sbjct: 125 --SHRPIQESSASQDSKPTQLEPVTSNTINISFTSAPKVET 163

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  154 bits (390), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 102/163 (62%), Gaps = 16/163 (9%)

Query: 34  KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPE 93
           KG WT  ED  L +Y+R HGEG W ++ ++ GL RCGKSCRLRW N+LRP+LK+G F+ +
Sbjct: 14  KGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDD 73

Query: 94  EERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQH 153
           E+++I++LH+ LGNKW+ +A +LPGRTDNEIKNYWNT +KR+      L    I P    
Sbjct: 74  EDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRK------LLSHGIDP---- 123

Query: 154 QHQHQNHQQSSHSHHSYHSQPSTPT-TPTSSFSFPIAATTPTT 195
               Q H+Q + S  +  SQ   P       +SF   A  P T
Sbjct: 124 ----QTHRQINES-KTVSSQVVVPIQNDAVEYSFSNLAVKPKT 161

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	505
297739155	426	unnamed protein product [Vitis vinifera]	0.289	0.342	0.754	5e-64
225447023	519	PREDICTED: uncharacterized protein LOC10	0.289	0.281	0.754	1e-63
224121716	674	predicted protein [Populus trichocarpa]	0.635	0.476	0.451	5e-63
15236911	389	myb domain protein 97 [Arabidopsis thali	0.312	0.406	0.664	1e-62
116831397	390	unknown [Arabidopsis thaliana]	0.312	0.405	0.664	1e-62
225460941	464	PREDICTED: uncharacterized protein LOC10	0.285	0.310	0.751	1e-62
297737449	428	unnamed protein product [Vitis vinifera]	0.285	0.336	0.751	2e-62
224064980	481	predicted protein [Populus trichocarpa]	0.839	0.881	0.364	7e-62
209571364	566	transcription factor MYB811 [Fagus crena	0.229	0.204	0.865	1e-61
356546292	595	PREDICTED: transcription factor GAMYB-li	0.302	0.257	0.687	5e-60

>gi|297739155|emb|CBI28806.3| unnamed protein product [Vitis vinifera]

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 126/151 (83%), Gaps = 5/151 (3%)

Query: 13  SGVGGL---NVSDGSGGEGGVQ--LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLA 67
           SG GG    + + G GG GG    LKKGPWT AEDA+L EYV++HGEGNWN+VQ+N+GL+
Sbjct: 5   SGGGGALSDDATSGMGGNGGANQGLKKGPWTTAEDAVLVEYVKRHGEGNWNSVQKNSGLS 64

Query: 68  RCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNY 127
           RCGKSCRLRWANHLRPNLKKG FSPEEERLIVELHA+LGNKWARMAAQLPGRTDNEIKNY
Sbjct: 65  RCGKSCRLRWANHLRPNLKKGAFSPEEERLIVELHAKLGNKWARMAAQLPGRTDNEIKNY 124

Query: 128 WNTRVKRRHRQGLPLYPPEIQPQHQHQHQHQ 158
           WNTRVKRR R GLPLYP  +Q +  HQ Q Q
Sbjct: 125 WNTRVKRRQRAGLPLYPQGVQKEALHQQQQQ 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447023|ref|XP_002268969.1| PREDICTED: uncharacterized protein LOC100253438 [Vitis vinifera]

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/151 (75%), Positives = 126/151 (83%), Gaps = 5/151 (3%)

Query: 13  SGVGGL---NVSDGSGGEGGVQ--LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLA 67
           SG GG    + + G GG GG    LKKGPWT AEDA+L EYV++HGEGNWN+VQ+N+GL+
Sbjct: 5   SGGGGALSDDATSGMGGNGGANQGLKKGPWTTAEDAVLVEYVKRHGEGNWNSVQKNSGLS 64

Query: 68  RCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNY 127
           RCGKSCRLRWANHLRPNLKKG FSPEEERLIVELHA+LGNKWARMAAQLPGRTDNEIKNY
Sbjct: 65  RCGKSCRLRWANHLRPNLKKGAFSPEEERLIVELHAKLGNKWARMAAQLPGRTDNEIKNY 124

Query: 128 WNTRVKRRHRQGLPLYPPEIQPQHQHQHQHQ 158
           WNTRVKRR R GLPLYP  +Q +  HQ Q Q
Sbjct: 125 WNTRVKRRQRAGLPLYPQGVQKEALHQQQQQ 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121716|ref|XP_002330635.1| predicted protein [Populus trichocarpa] gi|222872239|gb|EEF09370.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (634), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 178/394 (45%), Positives = 216/394 (54%), Gaps = 73/394 (18%)

Query: 36  PWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEE 95
           PWTAAEDAIL EYV KHGEGNWNA+Q+ + LARCGKSCRLRW NHLRPNLKKG FS EEE
Sbjct: 124 PWTAAEDAILIEYVNKHGEGNWNALQKRSVLARCGKSCRLRWTNHLRPNLKKGNFSAEEE 183

Query: 96  RLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQHQH 155
           R+IVELHAQ GNKWARMAA+LPGRTDN+IKN+WNTR KR  R  LPLYPPEI PQ+    
Sbjct: 184 RIIVELHAQFGNKWARMAARLPGRTDNDIKNFWNTRTKRLLRHRLPLYPPEILPQNPPSP 243

Query: 156 QHQNHQQSSHSHHSYHSQPSTPTTPTSSFSFPIA-ATTPTTPTGGHHQHHSLHHHFPPPC 214
           QH N+ + SH         S P+TPTSSF+FP     +PTTPT   +   S    F PP 
Sbjct: 244 QHDNNNKKSH---------SLPSTPTSSFTFPTTQLLSPTTPTNPQNNLTSPARAFTPPA 294

Query: 215 YSRSPTPSSLPPTPPPLSPGLRSPHQPA-----------FPTLTLFDTNTNTNANNNSNA 263
               P  ++ PPTP  L P       P            FPTL LFD             
Sbjct: 295 TPTHPPTAARPPTPAALHPSPPPFTAPPISPLSSPSTANFPTLPLFD------------- 341

Query: 264 ANSSVMSSNNISNTFNMPRTPPLLQNPPRFKRFHSDTSINTFAANQNDINNNNNINSSSS 323
                         F++PR PP+L  PPRFK F   +S  +        NN   +N+  +
Sbjct: 342 --------------FSLPRAPPILHIPPRFKNFSQSSSATS-------PNNTTIVNTPPT 380

Query: 324 FQGSNNFSMPFLPFFRSPSSPSLLTSPTSNCNTS----AFPSATTKLLSHPSFSFGNQNS 379
              S++ ++P   +F  PSSP  L + TS  NTS      P   T LLS  S  F  +  
Sbjct: 381 ---SHSITVP-ASYFSLPSSP--LPAITSPSNTSPLSYEIPCCFTNLLSSNSSEFHKE-- 432

Query: 380 SAIYRNPDEKECILTSTGSVFNLKPELPSSQSLS 413
                  +EK C+L ++ +  +    LP +Q LS
Sbjct: 433 ---MERENEKLCLLLASVTQTD---HLPFAQLLS 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236911|ref|NP_194423.1| myb domain protein 97 [Arabidopsis thaliana] gi|5823337|gb|AAD53107.1|AF176002_1 putative transcription factor [Arabidopsis thaliana] gi|4455216|emb|CAB36539.1| putative myb-related protein [Arabidopsis thaliana] gi|7269546|emb|CAB79548.1| putative myb-related protein [Arabidopsis thaliana] gi|332659871|gb|AEE85271.1| myb domain protein 97 [Arabidopsis thaliana]

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 134/176 (76%), Gaps = 18/176 (10%)

Query: 16  GGLNVSDGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRL 75
           GG    DG GG  GV LKKGPWT AED  L  YVR++GEGNWN+VQ+ T LARCGKSCRL
Sbjct: 5   GGGASEDGEGG--GVVLKKGPWTVAEDETLAAYVREYGEGNWNSVQKKTWLARCGKSCRL 62

Query: 76  RWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
           RWANHLRPNL+KG+F+PEEERLI++LH+QLGNKWARMAAQLPGRTDNEIKNYWNTR+KR 
Sbjct: 63  RWANHLRPNLRKGSFTPEEERLIIQLHSQLGNKWARMAAQLPGRTDNEIKNYWNTRLKRF 122

Query: 136 HRQGLPLYPPEIQPQHQHQHQHQNHQQSSHSHHSYHSQPSTPT---TPTSSFSFPI 188
            RQGLPLYPPE             + Q++H    Y  QPS+P    TP SSF+FP+
Sbjct: 123 QRQGLPLYPPE-------------YSQNNHQQQMYPQQPSSPLPSQTPASSFTFPL 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831397|gb|ABK28651.1| unknown [Arabidopsis thaliana]

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 134/176 (76%), Gaps = 18/176 (10%)

Query: 16  GGLNVSDGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRL 75
           GG    DG GG  GV LKKGPWT AED  L  YVR++GEGNWN+VQ+ T LARCGKSCRL
Sbjct: 5   GGGASEDGEGG--GVVLKKGPWTVAEDETLAAYVREYGEGNWNSVQKKTWLARCGKSCRL 62

Query: 76  RWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
           RWANHLRPNL+KG+F+PEEERLI++LH+QLGNKWARMAAQLPGRTDNEIKNYWNTR+KR 
Sbjct: 63  RWANHLRPNLRKGSFTPEEERLIIQLHSQLGNKWARMAAQLPGRTDNEIKNYWNTRLKRF 122

Query: 136 HRQGLPLYPPEIQPQHQHQHQHQNHQQSSHSHHSYHSQPSTPT---TPTSSFSFPI 188
            RQGLPLYPPE             + Q++H    Y  QPS+P    TP SSF+FP+
Sbjct: 123 QRQGLPLYPPE-------------YSQNNHQQQMYPQQPSSPLPSQTPASSFTFPL 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460941|ref|XP_002278003.1| PREDICTED: uncharacterized protein LOC100262343 [Vitis vinifera]

 Score =  247 bits (630), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/149 (75%), Positives = 126/149 (84%), Gaps = 5/149 (3%)

Query: 2   LLGNSNGEQLESGVGGLNVSDGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQ 61
           ++ NS+G  +E         +G    GGV LKKGPWTAAEDAIL EYV KHGEGNWNAVQ
Sbjct: 1   MVANSSGAGVED-----RPENGGSDAGGVALKKGPWTAAEDAILVEYVTKHGEGNWNAVQ 55

Query: 62  RNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTD 121
           +N+GLARCGKSCRLRWANHLRPNLKKG+FS EEER+I+ELHA+LGNKWARMAAQLPGRTD
Sbjct: 56  KNSGLARCGKSCRLRWANHLRPNLKKGSFSAEEERVILELHAKLGNKWARMAAQLPGRTD 115

Query: 122 NEIKNYWNTRVKRRHRQGLPLYPPEIQPQ 150
           NEIKNYWNTR+KRR RQGLP+YP E+Q Q
Sbjct: 116 NEIKNYWNTRIKRRLRQGLPVYPQEVQNQ 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737449|emb|CBI26650.3| unnamed protein product [Vitis vinifera]

 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/149 (75%), Positives = 126/149 (84%), Gaps = 5/149 (3%)

Query: 2   LLGNSNGEQLESGVGGLNVSDGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQ 61
           ++ NS+G  +E         +G    GGV LKKGPWTAAEDAIL EYV KHGEGNWNAVQ
Sbjct: 1   MVANSSGAGVED-----RPENGGSDAGGVALKKGPWTAAEDAILVEYVTKHGEGNWNAVQ 55

Query: 62  RNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTD 121
           +N+GLARCGKSCRLRWANHLRPNLKKG+FS EEER+I+ELHA+LGNKWARMAAQLPGRTD
Sbjct: 56  KNSGLARCGKSCRLRWANHLRPNLKKGSFSAEEERVILELHAKLGNKWARMAAQLPGRTD 115

Query: 122 NEIKNYWNTRVKRRHRQGLPLYPPEIQPQ 150
           NEIKNYWNTR+KRR RQGLP+YP E+Q Q
Sbjct: 116 NEIKNYWNTRIKRRLRQGLPVYPQEVQNQ 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064980|ref|XP_002301620.1| predicted protein [Populus trichocarpa] gi|222843346|gb|EEE80893.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (623), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 188/516 (36%), Positives = 250/516 (48%), Gaps = 92/516 (17%)

Query: 32  LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFS 91
           LKKGPWT AEDAIL EYV+KHGEGNWN+VQ+N  L RCGKSCRLRWANHLRPNLKKG+F+
Sbjct: 16  LKKGPWTVAEDAILIEYVKKHGEGNWNSVQKNFRLMRCGKSCRLRWANHLRPNLKKGSFT 75

Query: 92  PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQH 151
           P+EE++I+ELHA+ GNKWARMA+QLPGRTDNEIKNYWNTR+KR  R GLP+YP + Q + 
Sbjct: 76  PDEEKIIIELHAKHGNKWARMASQLPGRTDNEIKNYWNTRMKRHQRAGLPIYPQDFQAKT 135

Query: 152 QH-QHQHQNHQQSSHSHHSYHSQPST----PTTPTSSFSFPIAATTPTTPTGGHHQHHSL 206
              +  HQ  +++  +  S  S P      P  P +SF+ P+               + L
Sbjct: 136 AAVRFHHQEGRRTQPNSTSLSSSPYNLCFPPLDPINSFATPL---------------NPL 180

Query: 207 HHHFPPPCYSRSPT----------------PSSLPPTP----PPLSPGLRS--PHQPAFP 244
            +H  P  +  +P+                P SLPP       PLS  L S  P + A P
Sbjct: 181 QNHLSPLAFYSNPSHQLKLFANTNSNDGCLPLSLPPVSSYQQSPLSTNLFSQNPTRQAAP 240

Query: 245 TLTLFDTNTNTNANNNSNAANSSVMSSNNISNTFNMPRTPPLLQNPPRFKRFHSDTSINT 304
             T        +A+  SN + +S++    +     +P      Q PP         +   
Sbjct: 241 INTPPSVLFYNDADMESNMSFTSLIMGGQVQPIGFIPSG----QTPPGPTTSWGGGAC-- 294

Query: 305 FAANQNDINNNNNINSSSSFQGSNNFSMPFLPFFRSPSSPSLLTSPTSNCNTSAFPSATT 364
           F    N  NNN   NS +S QG                          N N S    A  
Sbjct: 295 FEEASNKSNNNGYSNSETSQQGM-----------------------AGNMNNSGLLDALL 331

Query: 365 KLLSHPSFSFGNQNSSAIYRNPDEKECILTSTGSVFNLKPELPSSQSLSQNVNAEILRSK 424
           +     SF  G  NS  +    +E +  + ST  V     +L    S SQ+ N   + +K
Sbjct: 332 QEAKTISFK-GKSNSDDLLPASNEGKRAMDST--VKEEGEKLWDDLSSSQSSN---IWTK 385

Query: 425 PKEETGGQI--NMHEDISKLLNVIPSMQ-VPEWYNDSGEASNCQSSV-----VTDDNLGL 476
           P EE   Q   +M +D   LLN  PS + +PEWY  S    N          + DDN   
Sbjct: 386 PSEEAADQELNSMDDDFISLLNNFPSSEPLPEWYRQSRNERNSNRMPYSGLNIVDDNRDP 445

Query: 477 ELQQLASILHVDSTTAP-------GSCSYDNLPGIC 505
           ++++ AS+    +T A         SC ++N+PGIC
Sbjct: 446 DVKEDASLTRASNTEAVPNRGRALVSCHWNNMPGIC 481

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209571364|dbj|BAG75111.1| transcription factor MYB811 [Fagus crenata]

 Score =  243 bits (621), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 109/126 (86%), Positives = 114/126 (90%)

Query: 22  DGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL 81
           +   G  GV LKKGPWTAAED IL EYVRKHGEGNWNAVQRN+GLARCGKSCRLRWANHL
Sbjct: 25  EAESGGVGVTLKKGPWTAAEDGILMEYVRKHGEGNWNAVQRNSGLARCGKSCRLRWANHL 84

Query: 82  RPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLP 141
           RPNLKKG FSPEEERLI+ELHA+ GNKWARMAAQLPGRTDNEIKNYWNTRVKRR RQGLP
Sbjct: 85  RPNLKKGAFSPEEERLILELHAKYGNKWARMAAQLPGRTDNEIKNYWNTRVKRRQRQGLP 144

Query: 142 LYPPEI 147
           LYP +I
Sbjct: 145 LYPHDI 150

Source: Fagus crenata

Species: Fagus crenata

Genus: Fagus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546292|ref|XP_003541563.1| PREDICTED: transcription factor GAMYB-like [Glycine max]

 Score =  238 bits (607), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 108/157 (68%), Positives = 124/157 (78%), Gaps = 4/157 (2%)

Query: 9   EQLESGVGGLNVSDGS-GGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLA 67
           E L + + G  ++D S  G  G+ LKKGPWT+ ED IL +YV+KHGEGNWNAVQ++TGL 
Sbjct: 70  EVLPNDMSGAQLNDESYEGSAGIVLKKGPWTSTEDDILVDYVKKHGEGNWNAVQKHTGLF 129

Query: 68  RCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNY 127
           RCGKSCRLRWANHLRPNLKKG F+ EEERLI ELHA++GNKWARMAA LPGRTDNEIKNY
Sbjct: 130 RCGKSCRLRWANHLRPNLKKGAFAAEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNY 189

Query: 128 WNTRVKRRHRQGLPLYPPEIQPQHQHQHQHQNHQQSS 164
           WNTR+KRR R GLPLYPPE+     H  Q   H QS+
Sbjct: 190 WNTRIKRRQRAGLPLYPPEVS---LHALQESQHSQST 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	505
TAIR|locus:2116447	389	MYB97 "myb domain protein 97"	0.255	0.331	0.786	6.8e-65
TAIR|locus:2151938	523	MYB120 "myb domain protein 120	0.265	0.256	0.788	1.9e-64
TAIR|locus:2060241	490	MYB101 "myb domain protein 101	0.235	0.242	0.831	4.8e-62
TAIR|locus:2152830	520	MYB33 "myb domain protein 33"	0.283	0.275	0.706	6.1e-58
TAIR|locus:2080697	553	MYB65 "myb domain protein 65"	0.253	0.231	0.763	1.5e-53
TAIR|locus:2059329	427	MYB81 "myb domain protein 81"	0.263	0.311	0.637	4.2e-47
TAIR|locus:2141231	350	MYB102 "MYB-like 102" [Arabido	0.215	0.311	0.609	6.6e-41
TAIR|locus:2089159	226	MYB21 "myb domain protein 21"	0.241	0.539	0.520	4.5e-38
TAIR|locus:2031531	333	MYB122 "myb domain protein 122	0.203	0.309	0.592	9.3e-38
TAIR|locus:2146804	352	MYB86 "myb domain protein 86"	0.217	0.312	0.567	1.5e-37

TAIR|locus:2116447 MYB97 "myb domain protein 97" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
 Identities = 103/131 (78%), Positives = 114/131 (87%)

Query:    16 GGLNVSDGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRL 75
             GG    DG GG  GV LKKGPWT AED  L  YVR++GEGNWN+VQ+ T LARCGKSCRL
Sbjct:     5 GGGASEDGEGG--GVVLKKGPWTVAEDETLAAYVREYGEGNWNSVQKKTWLARCGKSCRL 62

Query:    76 RWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
             RWANHLRPNL+KG+F+PEEERLI++LH+QLGNKWARMAAQLPGRTDNEIKNYWNTR+KR 
Sbjct:    63 RWANHLRPNLRKGSFTPEEERLIIQLHSQLGNKWARMAAQLPGRTDNEIKNYWNTRLKRF 122

Query:   136 HRQGLPLYPPE 146
              RQGLPLYPPE
Sbjct:   123 QRQGLPLYPPE 133

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2151938 MYB120 "myb domain protein 120" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.9e-64, Sum P(3) = 1.9e-64
 Identities = 108/137 (78%), Positives = 119/137 (86%)

Query:    14 GVGGLNVSDGSGG---EGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCG 70
             G GG     GS     +GGV LKKGPWTAAED IL  YVR++GEGNWNAVQ+NTGLARCG
Sbjct:     5 GGGGAGKDGGSTNHLSDGGVILKKGPWTAAEDEILAAYVRENGEGNWNAVQKNTGLARCG 64

Query:    71 KSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNT 130
             KSCRLRWANHLRPNLKKG+F+ +EERLI++LHAQLGNKWARMAAQLPGRTDNEIKNYWNT
Sbjct:    65 KSCRLRWANHLRPNLKKGSFTGDEERLIIQLHAQLGNKWARMAAQLPGRTDNEIKNYWNT 124

Query:   131 RVKRRHRQGLPLYPPEI 147
             R+KR  RQGLPLYPP+I
Sbjct:   125 RLKRLLRQGLPLYPPDI 141

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009860 "pollen tube growth" evidence=IMP

TAIR|locus:2060241 MYB101 "myb domain protein 101" [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
 Identities = 99/119 (83%), Positives = 111/119 (93%)

Query:    29 GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKG 88
             G  LKKGPWT  EDAILTEYVRKHGEGNWNAVQ+N+GL RCGKSCRLRWANHLRPNLKKG
Sbjct:    15 GRGLKKGPWTTTEDAILTEYVRKHGEGNWNAVQKNSGLLRCGKSCRLRWANHLRPNLKKG 74

Query:    89 TFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEI 147
             +F+P+EE++I++LHA+LGNKWARMA+QLPGRTDNEIKNYWNTR+KRR R GLPLYP EI
Sbjct:    75 SFTPDEEKIIIDLHAKLGNKWARMASQLPGRTDNEIKNYWNTRMKRRQRAGLPLYPHEI 133

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

TAIR|locus:2152830 MYB33 "myb domain protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 6.1e-58, Sum P(2) = 6.1e-58
 Identities = 101/143 (70%), Positives = 116/143 (81%)

Query:     5 NSNGEQLESGVGGLNVSDGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNT 64
             +++ +  ES     N SD      G  LKKGPW++AED IL +YV KHGEGNWNAVQ++T
Sbjct:     5 STDSDHNESPAADDNGSDCRSRWDGHALKKGPWSSAEDDILIDYVNKHGEGNWNAVQKHT 64

Query:    65 GLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEI 124
              L RCGKSCRLRWANHLRPNLKKG FS EEE+LIVELHA++GN+WARMAA LPGRTDNEI
Sbjct:    65 SLFRCGKSCRLRWANHLRPNLKKGAFSQEEEQLIVELHAKMGNRWARMAAHLPGRTDNEI 124

Query:   125 KNYWNTRVKRRHRQGLPLYPPEI 147
             KNYWNTR+KRR R GLPLYPPE+
Sbjct:   125 KNYWNTRIKRRQRAGLPLYPPEM 147

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0048235 "pollen sperm cell differentiation" evidence=IGI

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

TAIR|locus:2080697 MYB65 "myb domain protein 65" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 100/131 (76%), Positives = 115/131 (87%)

Query:    19 NVSDG--SGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLR 76
             ++S+G  S G+  V LKKGPWT+ ED IL +YV+KHGEGNWNAVQ++T LARCGKSCRLR
Sbjct:    27 SISNGCRSRGKRSV-LKKGPWTSTEDGILIDYVKKHGEGNWNAVQKHTSLARCGKSCRLR 85

Query:    77 WANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH 136
             WANHLRPNLKKG FS EEE+LIVE+HA++GNKWA+MA  LPGRTDNEIKNYWNTR+KRR 
Sbjct:    86 WANHLRPNLKKGAFSQEEEQLIVEMHAKMGNKWAQMAEHLPGRTDNEIKNYWNTRIKRRQ 145

Query:   137 RQGLPLYPPEI 147
             R GLPLYPPEI
Sbjct:   146 RAGLPLYPPEI 156

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0048235 "pollen sperm cell differentiation" evidence=IGI

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

TAIR|locus:2059329 MYB81 "myb domain protein 81" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 86/135 (63%), Positives = 106/135 (78%)

Query:    15 VGGLNVSDGSGGEGGVQ--LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKS 72
             +G +    GS  +  ++    KGPWT AED +L  YV KHG+GNWNAVQ N+GL+RCGKS
Sbjct:     1 MGKVRQDSGSDDDNSIKKSFTKGPWTQAEDNLLIAYVDKHGDGNWNAVQNNSGLSRCGKS 60

Query:    73 CRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRV 132
             CRLRW NHLRP+LKKG F+ +EE+ ++ELHA LGNKWARMA +LPGRTDNEIKN+WNTR+
Sbjct:    61 CRLRWVNHLRPDLKKGAFTEKEEKRVIELHALLGNKWARMAEELPGRTDNEIKNFWNTRL 120

Query:   133 KRRHRQGLPLYPPEI 147
             KR  R GLP+YP E+
Sbjct:   121 KRLQRLGLPVYPDEV 135

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
 Identities = 67/110 (60%), Positives = 89/110 (80%)

Query:    32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFS 91
             LKKGPWT+ ED  L +Y++KHG GNW  + +N GL RCGKSCRLRW N+LRP++K+G FS
Sbjct:    12 LKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFS 71

Query:    92 PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH-RQGL 140
              EEE  I++LH+ LGNKW+ +AA+LPGRTDNEIKN+WNT ++++  R G+
Sbjct:    72 FEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTHIRKKLLRMGI 121

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2089159 MYB21 "myb domain protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 64/123 (52%), Positives = 92/123 (74%)

Query:    16 GGLNVSDGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRL 75
             GG   S GSG     +++KGPWT  ED IL  Y+  HG+G WN++ ++ GL R GKSCRL
Sbjct:     5 GG-GSSGGSGSSAEAEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRL 63

Query:    76 RWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
             RW N+LRP++++G  +PEE+ +I+ELHA+ GN+W+++A  LPGRTDNEIKN+W TR+++ 
Sbjct:    64 RWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKY 123

Query:   136 HRQ 138
              +Q
Sbjct:   124 IKQ 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0048443 "stamen development" evidence=RCA;IMP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IEP

GO:0080086 "stamen filament development" evidence=IGI

GO:0048441 "petal development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2031531 MYB122 "myb domain protein 122" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 61/103 (59%), Positives = 77/103 (74%)

Query:    32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFS 91
             LKKG WT  ED  L  YV++HGEG W  +    GL RCGKSCRLRWAN+LRP++K+G FS
Sbjct:    12 LKKGAWTQEEDQKLIAYVQRHGEGGWRTLPDKAGLKRCGKSCRLRWANYLRPDIKRGEFS 71

Query:    92 PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKR 134
              +EE  I+ LHA  GNKW+ +A ++P RTDNEIKN+WNT +K+
Sbjct:    72 QDEEDSIINLHAIHGNKWSAIARKIPRRTDNEIKNHWNTHIKK 114

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009625 "response to insect" evidence=IEP

TAIR|locus:2146804 MYB86 "myb domain protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
 Identities = 63/111 (56%), Positives = 88/111 (79%)

Query:    31 QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTF 90
             +L+KG W+  ED  L  Y+ +HG G W++V +  GL RCGKSCRLRW N+LRP+LK+G F
Sbjct:    11 KLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAF 70

Query:    91 SPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR-HRQGL 140
             S +EE LI+ELHA LGN+W+++A +LPGRTDNEIKN+WN+ +K++  R+G+
Sbjct:    71 SQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKGI 121

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025883001 SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (426 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	505
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	1e-38
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	3e-37
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	6e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-14
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	1e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	8e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-13
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	2e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	4e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	7e-12
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	6e-07
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	1e-05
pfam04592	238	pfam04592, SelP_N, Selenoprotein P, N terminal reg	2e-04

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  141 bits (356), Expect = 1e-38
 Identities = 60/110 (54%), Positives = 85/110 (77%), Gaps = 1/110 (0%)

Query: 32  LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFS 91
           +K+GPWT  ED IL  +++K GEG W ++ +  GL RCGKSCRLRW N+LRP++K+G  +
Sbjct: 23  MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT 82

Query: 92  PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR-HRQGL 140
            +EE LI+ LH  LGN+W+ +A ++PGRTDNEIKNYWNT ++++  RQG+
Sbjct: 83  SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGI 132

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  142 bits (359), Expect = 3e-37
 Identities = 65/108 (60%), Positives = 87/108 (80%)

Query: 31  QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTF 90
           +L+KG W+  ED  L  ++ K+G G W++V +  GL RCGKSCRLRW N+LRP+LK+GTF
Sbjct: 11  KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTF 70

Query: 91  SPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQ 138
           S +EE LI+ELHA LGN+W+++AAQLPGRTDNEIKN WN+ +K++ RQ
Sbjct: 71  SQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ 118

Length = 459

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 68.3 bits (168), Expect = 6e-15
 Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)

Query: 87  KGTFSPEEERLIVELHAQLGNK-WARMAAQLPGRTDNEIKNYWNT 130
           +G ++PEE+ L++E   + GN  W+++A  LPGRTDN+ KN WN 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNN 45

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 67.5 bits (166), Expect = 1e-14
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL 81
          +GPWT  ED +L E V+KHG GNW+ + ++    R    C+ RW N+L
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPG-RTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 75.6 bits (186), Expect = 1e-14
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 29  GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKG 88
             + K G W   ED  L   V+K G  NW+ V         GK    RW NHL P LKK 
Sbjct: 15  QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKK 73

Query: 89  TFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWN 129
            +S EE+  +++L  +LG +W+ +A     RT  +    + 
Sbjct: 74  NWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYV 114

Length = 512

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 65.3 bits (160), Expect = 8e-14
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 87  KGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNTRVKR 134
           KG ++ EE+ L++EL  + G N W ++A +LPGRT  + +  W   +K 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 63.0 bits (154), Expect = 4e-13
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83
          KG WT  ED +L E V+K+G+ NW  + +     R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 37 WTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEER 96
          WT  ED  L + V K+G  +W  +     L R   +CR RW   LRP   +G ++ EE++
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEE--LGRTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 60.3 bits (147), Expect = 4e-12
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 89  TFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNT 130
            ++ EE+ L++E   + G N W ++A +LPGRT  + +  W  
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 59.5 bits (145), Expect = 7e-12
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 36 PWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL 81
          PWT  ED +L E V+K+G+ NW  + +     R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 90  FSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQ 148
           ++ EE+  +++L  + GN W ++A +L GRT +  ++ W  R  R  R   P    E Q
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWR-RKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 36 PWTAAEDAILTEYVRKHGEGNWNAVQR 62
           WT  ED  L E V K+G GNW  + +
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWAKILK 28

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 18/61 (29%), Positives = 26/61 (42%)

Query: 144 PPEIQPQHQHQHQHQNHQQSSHSHHSYHSQPSTPTTPTSSFSFPIAATTPTTPTGGHHQH 203
           P E +P+  H H H +H+   H+HH  H      +   S    P        P+G HH H
Sbjct: 176 PVEAEPRQDHPHHHSHHEHQGHAHHHPHGHHHPGSNSHSESQQPDPDKPTEPPSGLHHHH 235

Query: 204 H 204
           +
Sbjct: 236 N 236

SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma. It is thought to be glycosylated. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage. The promoter structure of bovine SelP suggest that it may be involved in countering heavy metal intoxication, and may also have a developmental function. The N-terminal region of SelP can exist independently of the C terminal region. Zebrafish selenoprotein Pb lacks the C terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported. N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N terminal region may adopt a thioredoxin fold and catalyze redox reactions. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP. The function of the bacterial members of this family is uncharcterised. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	505
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.97
PLN03212	249	Transcription repressor MYB5; Provisional	99.97
PLN03091	459	hypothetical protein; Provisional	99.97
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.69
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.64
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.57
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.45
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.43
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.37
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.3
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.23
PLN03212	249	Transcription repressor MYB5; Provisional	99.15
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.14
PLN03091	459	hypothetical protein; Provisional	99.07
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.05
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.0
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.94
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.92
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.82
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.79
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.07
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.86
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.66
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.56
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.48
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.4
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.88
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.75
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.74
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	96.72
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.7
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.69
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.51
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.13
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.1
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.06
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.0
PRK13923	170	putative spore coat protein regulator protein YlbO	95.82
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.4
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.27
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.17
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.97
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	94.9
PRK13923	170	putative spore coat protein regulator protein YlbO	93.2
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.8
KOG4282	345	consensus Transcription factor GT-2 and related pr	91.51
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	91.41
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	90.33
KOG4282	345	consensus Transcription factor GT-2 and related pr	88.3
KOG2656	445	consensus DNA methyltransferase 1-associated prote	88.1
KOG1194	534	consensus Predicted DNA-binding protein, contains	84.6
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	83.2
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	82.01
KOG4329	445	consensus DNA-binding protein [General function pr	80.17

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.97  E-value=1.9e-31  Score=262.53  Aligned_cols=110  Identities=54%  Similarity=0.963  Sum_probs=106.1

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHH
Q 046419           31 QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWA  110 (505)
Q Consensus        31 ~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~kWs  110 (505)
                      .+.||+||+|||++|+++|++||.++|..|++.+|++|++|+||+||.|||+|.++++.||+|||++|++|+++||++|+
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs   85 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWS   85 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCHHHHHHHHHHHhhhhhhcCC
Q 046419          111 RMAAQLPGRTDNEIKNYWNTRVKRRHRQGL  140 (505)
Q Consensus       111 kIAk~LpgRT~~qcKnRW~~llkk~~r~~~  140 (505)
                      .||++|||||+++|||+|+..+||+.+...
T Consensus        86 ~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   86 LIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999987654

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.97  E-value=8.4e-31  Score=257.09  Aligned_cols=113  Identities=50%  Similarity=1.067  Sum_probs=107.7

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 046419           27 EGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLG  106 (505)
Q Consensus        27 ~~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG  106 (505)
                      -.+.+++|++||+|||++|+++|++||..+|.+||+.++.+|+++|||+||.++|+|.+++++||+|||++|++++.+||
T Consensus        18 c~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~G   97 (249)
T PLN03212         18 CTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLG   97 (249)
T ss_pred             cccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcc
Confidence            35789999999999999999999999998999999999669999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcC
Q 046419          107 NKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQG  139 (505)
Q Consensus       107 ~kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~  139 (505)
                      ++|+.||+.|+|||+++||+||+.+++++..+.
T Consensus        98 nKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~  130 (249)
T PLN03212         98 NRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ  130 (249)
T ss_pred             ccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhc
Confidence            999999999999999999999999999887654

>PLN03091 hypothetical protein; Provisional

Probab=99.97  E-value=1.9e-29  Score=263.11  Aligned_cols=112  Identities=58%  Similarity=1.058  Sum_probs=107.1

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 046419           28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGN  107 (505)
Q Consensus        28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~  107 (505)
                      .+++++||+||+|||++|+++|++||..+|.+||+.++.+|+++|||+||.++|+|.+++++||+|||++|++++++||.
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn   87 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence            36789999999999999999999999999999999997799999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcC
Q 046419          108 KWARMAAQLPGRTDNEIKNYWNTRVKRRHRQG  139 (505)
Q Consensus       108 kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~  139 (505)
                      +|++||+.|+|||+++||+||+.+++++.++.
T Consensus        88 KWskIAk~LPGRTDnqIKNRWnslLKKklr~~  119 (459)
T PLN03091         88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR  119 (459)
T ss_pred             chHHHHHhcCCCCHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999887653

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.69  E-value=1.2e-17  Score=179.97  Aligned_cols=127  Identities=21%  Similarity=0.318  Sum_probs=109.2

Q ss_pred             CCcceecccCCCCCCCCCCCC---CCCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccC
Q 046419            6 SNGEQLESGVGGLNVSDGSGG---EGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLR   82 (505)
Q Consensus         6 ~~~~~~~s~~gg~~~~~~s~~---~~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~   82 (505)
                      ++|.+|---+.|++.....++   .-.+.+|+|+||.+||.+|..+|.+||..+|.+|-..++ +|+..|||+||.+.|.
T Consensus       329 I~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~  407 (939)
T KOG0049|consen  329 IQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLN  407 (939)
T ss_pred             cchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHH
Confidence            456666666677765544443   567899999999999999999999999999999999999 9999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHH---HHHHHHHHhh
Q 046419           83 PNLKKGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNE---IKNYWNTRVK  133 (505)
Q Consensus        83 p~lkkg~WT~EED~lLlelV~kyG-~kWskIAk~LpgRT~~q---cKnRW~~llk  133 (505)
                      ...|++.|+-.||++|+.+|++|| +.|.+||..|+.||+.|   ||.|+..+..
T Consensus       408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~  462 (939)
T KOG0049|consen  408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKL  462 (939)
T ss_pred             HhhccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHH
Confidence            999999999999999999999999 57999999999999954   5555544433

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.64  E-value=1.9e-16  Score=170.82  Aligned_cols=148  Identities=20%  Similarity=0.295  Sum_probs=123.7

Q ss_pred             cCCCcceecccCCCCCCCCCCCC---CCCCCCccCCCCHHHHHHHHHHHHHhCC---CCcchhccccCCccccccccccc
Q 046419            4 GNSNGEQLESGVGGLNVSDGSGG---EGGVQLKKGPWTAAEDAILTEYVRKHGE---GNWNAVQRNTGLARCGKSCRLRW   77 (505)
Q Consensus         4 g~~~~~~~~s~~gg~~~~~~s~~---~~~~~lkKG~WT~EEDelL~~lV~k~G~---~nW~~IAk~m~~gRT~kQCR~Rw   77 (505)
                      |-++|+.++...|-..-+..+=.   .+...+++..||+|||.+|+.+|+.-..   .+|++|-..|+ +|+..|...||
T Consensus       272 ~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp-gr~~~qLI~R~  350 (939)
T KOG0049|consen  272 KFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP-GRTRQQLITRF  350 (939)
T ss_pred             ccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC-Ccchhhhhhhh
Confidence            34567777766654221111100   1234667799999999999999998854   48999999999 99999999999


Q ss_pred             ccccCCCCCCCCCCHHHHHHHHHHHHHhCCC-HHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCCCCCCCchhh
Q 046419           78 ANHLRPNLKKGTFSPEEERLIVELHAQLGNK-WARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQ  152 (505)
Q Consensus        78 ~n~L~p~lkkg~WT~EED~lLlelV~kyG~k-WskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~~~e~q~~~~  152 (505)
                      ...|+|.+++|.||.+||.+|+.+|.+||.+ |.+|...+|||++.|||.||.+.+.++.+.+.|...++.+....
T Consensus       351 ~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~  426 (939)
T KOG0049|consen  351 SHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYA  426 (939)
T ss_pred             eeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHH
Confidence            9999999999999999999999999999965 99999999999999999999999999999999998887665443

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.57  E-value=1.3e-15  Score=119.30  Aligned_cols=60  Identities=42%  Similarity=0.932  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHH
Q 046419           37 WTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLI   98 (505)
Q Consensus        37 WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lL   98 (505)
                      ||+|||++|+++|++||. +|.+||+.|| .|++.||+.||.++|.+.+++++||+|||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999997 9999999997 89999999999999999999999999999987

...

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=2.8e-14  Score=151.54  Aligned_cols=107  Identities=25%  Similarity=0.523  Sum_probs=101.5

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHH
Q 046419           31 QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWA  110 (505)
Q Consensus        31 ~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~kWs  110 (505)
                      -++.|.|+.-||++|..+|++||...|.+|++.+. .++++||+.||..+|+|.+++..|+.|||++|+.+...+...|.
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwr   82 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWR   82 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccc
Confidence            46789999999999999999999999999999998 88999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCHHHHHHHHHHHhhhhhhcC
Q 046419          111 RMAAQLPGRTDNEIKNYWNTRVKRRHRQG  139 (505)
Q Consensus       111 kIAk~LpgRT~~qcKnRW~~llkk~~r~~  139 (505)
                      .||..| ||+.+||-.||+.++.......
T Consensus        83 tIa~i~-gr~~~qc~eRy~~ll~~~~s~~  110 (617)
T KOG0050|consen   83 TIADIM-GRTSQQCLERYNNLLDVYVSYH  110 (617)
T ss_pred             hHHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence            999999 9999999999999998776543

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.43  E-value=1.1e-13  Score=149.23  Aligned_cols=109  Identities=30%  Similarity=0.534  Sum_probs=103.4

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 046419           28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGN  107 (505)
Q Consensus        28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~  107 (505)
                      ...+++.|.|+..||+.|..+|++||..+|.+||..+. -|+++||+.||.+++.+.+++..|+.|||.+|+.+..++|.
T Consensus        14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~   92 (512)
T COG5147          14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT   92 (512)
T ss_pred             ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc
Confidence            46688899999999999999999999999999999998 68999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 046419          108 KWARMAAQLPGRTDNEIKNYWNTRVKRRHR  137 (505)
Q Consensus       108 kWskIAk~LpgRT~~qcKnRW~~llkk~~r  137 (505)
                      .|+.||..+++|+..+|.+||...+.....
T Consensus        93 ~wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          93 QWSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            999999999999999999999988776654

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.37  E-value=4.3e-13  Score=146.11  Aligned_cols=108  Identities=24%  Similarity=0.477  Sum_probs=95.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCC--CCCCCCCHHHHHHHHHHHH-------
Q 046419           33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPN--LKKGTFSPEEERLIVELHA-------  103 (505)
Q Consensus        33 kKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~--lkkg~WT~EED~lLlelV~-------  103 (505)
                      +||+||+||++.|+.+|.++|. .|.+|++.||  |.+..||+||+++....  .+++.||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            8999999999999999999999 9999999995  99999999999999886  4889999999999999995       


Q ss_pred             HhC------------C-------CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCC
Q 046419          104 QLG------------N-------KWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLY  143 (505)
Q Consensus       104 kyG------------~-------kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~  143 (505)
                      ++.            .       .|..|++.+.+|+..|||-+|..++.+....+...+
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~  518 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQES  518 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhccccc
Confidence            341            1       399999999999999999999998888765554333

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.30  E-value=3.7e-13  Score=101.60  Aligned_cols=48  Identities=42%  Similarity=0.790  Sum_probs=43.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccccccccc
Q 046419           34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL   81 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L   81 (505)
                      |++||+|||++|+++|.+||.++|.+||+.|+.+||..||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999999669999999988999999999998865

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.23  E-value=1.3e-11  Score=93.10  Aligned_cols=46  Identities=24%  Similarity=0.658  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-HHHHHhhCC-CCCHHHHHHHHHHHh
Q 046419           87 KGTFSPEEERLIVELHAQLGNK-WARMAAQLP-GRTDNEIKNYWNTRV  132 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~k-WskIAk~Lp-gRT~~qcKnRW~~ll  132 (505)
                      +++||+|||++|+++|.+||.+ |..||..|+ +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5789999999999999999988 999999999 999999999999864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.15  E-value=2.7e-11  Score=120.05  Aligned_cols=89  Identities=15%  Similarity=0.293  Sum_probs=72.0

Q ss_pred             cCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhC-CCCCHHHHHHHHHHHhhhhhhcCCC
Q 046419           64 TGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLG-NKWARMAAQL-PGRTDNEIKNYWNTRVKRRHRQGLP  141 (505)
Q Consensus        64 m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG-~kWskIAk~L-pgRT~~qcKnRW~~llkk~~r~~~~  141 (505)
                      ++ +|+.--|.       +..+++++||+|||++|+++|++|| .+|.+||+.+ ++|+++|||.||..+|+..++++.|
T Consensus        10 ~~-~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpW   81 (249)
T PLN03212         10 VS-KKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGI   81 (249)
T ss_pred             CC-CCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCC
Confidence            45 56555443       2467899999999999999999999 5799999998 5999999999999999999999999


Q ss_pred             CCCCCCCchhhhhhhhccc
Q 046419          142 LYPPEIQPQHQHQHQHQNH  160 (505)
Q Consensus       142 ~~~~e~q~~~~~~~~~qq~  160 (505)
                      +.+++......+......|
T Consensus        82 T~EED~lLlel~~~~GnKW  100 (249)
T PLN03212         82 TSDEEDLILRLHRLLGNRW  100 (249)
T ss_pred             ChHHHHHHHHHHHhccccH
Confidence            9988766554444333333

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.14  E-value=7.5e-11  Score=92.32  Aligned_cols=53  Identities=28%  Similarity=0.617  Sum_probs=43.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCC
Q 046419           90 FSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPL  142 (505)
Q Consensus        90 WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~  142 (505)
                      ||+|||++|+++|++||.+|.+||+.|+.||..+|++||+..++....++.+.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt   53 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWT   53 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSS
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcC
Confidence            99999999999999999999999999966999999999999776665555443

...

>PLN03091 hypothetical protein; Provisional

Probab=99.07  E-value=5.9e-11  Score=125.40  Aligned_cols=71  Identities=21%  Similarity=0.354  Sum_probs=63.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCC-CCCHHHHHHHHHHHhhhhhhcCCCCCCCCCCchhhh
Q 046419           83 PNLKKGTFSPEEERLIVELHAQLGN-KWARMAAQLP-GRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQH  153 (505)
Q Consensus        83 p~lkkg~WT~EED~lLlelV~kyG~-kWskIAk~Lp-gRT~~qcKnRW~~llkk~~r~~~~~~~~e~q~~~~~  153 (505)
                      ..++++.||+|||++|+++|++||. +|.+||+.+. +|+++|||.||..+|+..++++.|+.+++......+
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~   82 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELH   82 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999995 6999999984 899999999999999999999999988886554443

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.05  E-value=4e-10  Score=82.23  Aligned_cols=47  Identities=40%  Similarity=0.888  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 046419           87 KGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNTRVK  133 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG-~kWskIAk~LpgRT~~qcKnRW~~llk  133 (505)
                      ++.||+|||++|++++.+|| .+|..||..|++||..+|+.||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            36899999999999999999 999999999999999999999998765

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.00  E-value=1.6e-10  Score=114.32  Aligned_cols=71  Identities=15%  Similarity=0.183  Sum_probs=62.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCC-CCCHHHHHHHHHHHhhhhhhcCCCCCCCCCCchhhhh
Q 046419           84 NLKKGTFSPEEERLIVELHAQLGN-KWARMAAQLP-GRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQHQ  154 (505)
Q Consensus        84 ~lkkg~WT~EED~lLlelV~kyG~-kWskIAk~Lp-gRT~~qcKnRW~~llkk~~r~~~~~~~~e~q~~~~~~  154 (505)
                      .+.||+||.|||++|+++|++||. +|..||+.++ +|++++||-||..+|+..++++.++.++|......|.
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~   78 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHA   78 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHH
Confidence            345799999999999999999995 5999999999 9999999999999999999999998888755544443

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.94  E-value=3.2e-10  Score=82.71  Aligned_cols=48  Identities=42%  Similarity=0.893  Sum_probs=44.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccC
Q 046419           34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLR   82 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~   82 (505)
                      ++.||++||++|+.++.+||..+|..||+.|+ +|+..+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            47899999999999999999559999999999 9999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.92  E-value=2.6e-09  Score=76.87  Aligned_cols=44  Identities=32%  Similarity=0.772  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHh
Q 046419           89 TFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNTRV  132 (505)
Q Consensus        89 ~WT~EED~lLlelV~kyG-~kWskIAk~LpgRT~~qcKnRW~~ll  132 (505)
                      +||+|||++|++++.+|| .+|..||+.|++|+..+|+.||..++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.82  E-value=2.9e-09  Score=116.58  Aligned_cols=118  Identities=24%  Similarity=0.333  Sum_probs=97.4

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCC-----------------------CCcchhccccCCccccccccc---ccccccCC
Q 046419           30 VQLKKGPWTAAEDAILTEYVRKHGE-----------------------GNWNAVQRNTGLARCGKSCRL---RWANHLRP   83 (505)
Q Consensus        30 ~~lkKG~WT~EEDelL~~lV~k~G~-----------------------~nW~~IAk~m~~gRT~kQCR~---Rw~n~L~p   83 (505)
                      ..++-+.|+.+||+.|...|..|-.                       +-|+.|.+.++ -|+.+..+.   |-.+.+.+
T Consensus       304 ~e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~  382 (607)
T KOG0051|consen  304 DEINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFEN  382 (607)
T ss_pred             hhhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccc
Confidence            3567789999999999999988822                       13678888898 599988876   33334433


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhh--hcCCCCCCCCCCchh
Q 046419           84 NLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRH--RQGLPLYPPEIQPQH  151 (505)
Q Consensus        84 ~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~--r~~~~~~~~e~q~~~  151 (505)
                        ++|.||+||++.|..+|.++|+.|..|++.| ||.+..|+.||+.+.+...  +++.|..+++.....
T Consensus       383 --~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk  449 (607)
T KOG0051|consen  383 --KRGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLK  449 (607)
T ss_pred             --ccCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHH
Confidence              8999999999999999999999999999999 9999999999999998885  777788777655443

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.79  E-value=2e-09  Score=77.44  Aligned_cols=44  Identities=43%  Similarity=0.886  Sum_probs=41.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccc
Q 046419           36 PWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANH   80 (505)
Q Consensus        36 ~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~   80 (505)
                      .||+|||++|+.++.+||..+|..||+.|+ +|+..+|+.||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999569999999998 89999999999765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.07  E-value=1.2e-06  Score=95.29  Aligned_cols=131  Identities=20%  Similarity=0.181  Sum_probs=107.5

Q ss_pred             cccCCCcceecccCCC---CCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccc
Q 046419            2 LLGNSNGEQLESGVGG---LNVSDGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWA   78 (505)
Q Consensus         2 ~~g~~~~~~~~s~~gg---~~~~~~s~~~~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~   78 (505)
                      -+|.-+|+.+++.+.-   .+....+.....+.++++.|+.|||+.|+.+-.++|. .|..||..++ +|+..+|.+||.
T Consensus        37 ~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~-~wstia~~~d-~rt~~~~~ery~  114 (512)
T COG5147          37 KLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT-QWSTIADYKD-RRTAQQCVERYV  114 (512)
T ss_pred             hcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc-hhhhhccccC-ccchHHHHHHHH
Confidence            3677788888888776   2333344446788999999999999999999999999 7999999998 999999999999


Q ss_pred             cccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419           79 NHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        79 n~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~  135 (505)
                      +.+..... ..|+..++...+-.+..|...|.++......+-...|.+++..+..+.
T Consensus       115 ~~~~~~~s-~~~s~~~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~  170 (512)
T COG5147         115 NTLEDLSS-THDSKLQRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASYRLRV  170 (512)
T ss_pred             HHhhhhhc-cccccccchhhccccCchhhhhhhhhhhhhcccchhhhhHHHHHHHHc
Confidence            99986555 889999888888888888888888887776777777788876655443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.86  E-value=7.2e-06  Score=65.02  Aligned_cols=49  Identities=12%  Similarity=0.163  Sum_probs=43.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCc---chhccccCCcc-ccccccccccccc
Q 046419           33 KKGPWTAAEDAILTEYVRKHGEGNW---NAVQRNTGLAR-CGKSCRLRWANHL   81 (505)
Q Consensus        33 kKG~WT~EEDelL~~lV~k~G~~nW---~~IAk~m~~gR-T~kQCR~Rw~n~L   81 (505)
                      +|-.||+||.++++++|+.+|.++|   ++|++.|+..| |..||+.|++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4567999999999999999999999   99999987667 9999999877654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.66  E-value=0.00011  Score=58.20  Aligned_cols=48  Identities=10%  Similarity=0.270  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CH---HHHHhhCC-CC-CHHHHHHHHHHHhhh
Q 046419           87 KGTFSPEEERLIVELHAQLGN-KW---ARMAAQLP-GR-TDNEIKNYWNTRVKR  134 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~-kW---skIAk~Lp-gR-T~~qcKnRW~~llkk  134 (505)
                      +-.||+||+.+++++++.||. +|   ..|++.|. .| |..||+.+++.+.-+
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            457999999999999999996 89   99999985 35 999999999887643

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.56  E-value=4.3e-05  Score=82.67  Aligned_cols=76  Identities=16%  Similarity=0.296  Sum_probs=65.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCCCCCCCchhhhhhhhccc
Q 046419           85 LKKGTFSPEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQHQHQHQNH  160 (505)
Q Consensus        85 lkkg~WT~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~~~e~q~~~~~~~~~qq~  160 (505)
                      ++.+.|+.-||++|..+|.+||. .|++|+..+.-++..||++||...+...+++..|...++.+..+...-.+.+|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qw   81 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQW   81 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCcc
Confidence            46788999999999999999995 59999999999999999999999999999999999888877766554443333

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.48  E-value=3.7e-05  Score=81.79  Aligned_cols=53  Identities=25%  Similarity=0.581  Sum_probs=48.4

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccC
Q 046419           29 GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLR   82 (505)
Q Consensus        29 ~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~   82 (505)
                      ...+-..-||.+|+-+|+++++.||-|||.+||..|| +|+..+|+++|.+++.
T Consensus        67 s~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   67 SFPILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHHh
Confidence            3456678899999999999999999999999999999 9999999999988764

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.40  E-value=0.00027  Score=75.42  Aligned_cols=51  Identities=20%  Similarity=0.412  Sum_probs=45.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419           85 LKKGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        85 lkkg~WT~EED~lLlelV~kyG-~kWskIAk~LpgRT~~qcKnRW~~llkk~  135 (505)
                      +-...||.+||.+||++++.|| ++|..||.++..|+..+||.+|.+.+-..
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~s  121 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVNS  121 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhcC
Confidence            4456799999999999999999 88999999999999999999998766543

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.88  E-value=0.00035  Score=75.11  Aligned_cols=47  Identities=23%  Similarity=0.557  Sum_probs=43.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccccccccc
Q 046419           33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL   81 (505)
Q Consensus        33 kKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L   81 (505)
                      ....||.+|..+|+++|+.||. +|.+||+++| +|+..||..||.++-
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~LP  324 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQLP  324 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcCC
Confidence            6679999999999999999999 9999999999 999999999987753

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.75  E-value=0.0019  Score=61.19  Aligned_cols=53  Identities=19%  Similarity=0.343  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-------CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcC
Q 046419           86 KKGTFSPEEERLIVELHAQLGN-------KWARMAAQLPGRTDNEIKNYWNTRVKRRHRQG  139 (505)
Q Consensus        86 kkg~WT~EED~lLlelV~kyG~-------kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~  139 (505)
                      +...||.|||.+|.+.|.+|-.       -..++++.| +||..+|.=||+..+|+.+...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~   62 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEA   62 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHH
Confidence            5678999999999999998853       289999999 9999999999999999887643

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.74  E-value=0.0019  Score=71.03  Aligned_cols=47  Identities=13%  Similarity=0.302  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 046419           86 KKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRV  132 (505)
Q Consensus        86 kkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~ll  132 (505)
                      .+..||++|..+|+++|+.||.+|.+||.++.+||..||--||.++=
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LP  298 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLP  298 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcC
Confidence            34579999999999999999999999999999999999999997643

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=96.72  E-value=0.003  Score=61.86  Aligned_cols=99  Identities=19%  Similarity=0.338  Sum_probs=70.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhccccCCcc--cccccccccccccCC-C--------------------CCCCCCCH
Q 046419           36 PWTAAEDAILTEYVRKHGEGNWNAVQRNTGLAR--CGKSCRLRWANHLRP-N--------------------LKKGTFSP   92 (505)
Q Consensus        36 ~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gR--T~kQCR~Rw~n~L~p-~--------------------lkkg~WT~   92 (505)
                      +|++++|-+|+.+|..-.  +-..|++-+.+.|  |-+.+.+||+.+|-- .                    ..+..||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998765  4566655443222  456667799888732 1                    14568999


Q ss_pred             HHHHHHHHHHHHhCC---CHHHHHhh-----CCCCCHHHHHHHHHHHhhhhh
Q 046419           93 EEERLIVELHAQLGN---KWARMAAQ-----LPGRTDNEIKNYWNTRVKRRH  136 (505)
Q Consensus        93 EED~lLlelV~kyG~---kWskIAk~-----LpgRT~~qcKnRW~~llkk~~  136 (505)
                      +||++|.........   .+.+|=..     .++||+.++.++|+.+.+...
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~L  130 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHL  130 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhch
Confidence            999999997665543   36666433     267999999999996655443

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.70  E-value=0.0018  Score=69.84  Aligned_cols=45  Identities=18%  Similarity=0.280  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 046419           87 KGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTR  131 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~l  131 (505)
                      ...|+.+|..+|++.|+.||..|.+||++++.|+..||--||.++
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            347999999999999999999999999999999999999999764

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.69  E-value=0.00071  Score=74.22  Aligned_cols=49  Identities=24%  Similarity=0.565  Sum_probs=44.6

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccccccccc
Q 046419           31 QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL   81 (505)
Q Consensus        31 ~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L   81 (505)
                      ..-++.||.+|+.+|+++|+.||. +|.+||.+++ +|+..||..|+.++-
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~LP  298 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRLP  298 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhcC
Confidence            345688999999999999999999 9999999999 999999999887653

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.51  E-value=0.0024  Score=53.15  Aligned_cols=49  Identities=27%  Similarity=0.567  Sum_probs=35.5

Q ss_pred             CCCCHHHHHHHHHHHHH------hC--C------CHHHHHhhC----CCCCHHHHHHHHHHHhhhhh
Q 046419           88 GTFSPEEERLIVELHAQ------LG--N------KWARMAAQL----PGRTDNEIKNYWNTRVKRRH  136 (505)
Q Consensus        88 g~WT~EED~lLlelV~k------yG--~------kWskIAk~L----pgRT~~qcKnRW~~llkk~~  136 (505)
                      ..||.+|...||+++.+      ++  .      .|..||..|    ..||..||++||+.+.++-.
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk   68 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYK   68 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            47999999999999877      21  1      399999998    35999999999998666544

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.13  E-value=0.0085  Score=48.84  Aligned_cols=51  Identities=14%  Similarity=0.378  Sum_probs=32.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-------C--HHHHHhhCC-CCCHHHHHHHHHHHhhhhhh
Q 046419           87 KGTFSPEEERLIVELHAQLGN-------K--WARMAAQLP-GRTDNEIKNYWNTRVKRRHR  137 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~-------k--WskIAk~Lp-gRT~~qcKnRW~~llkk~~r  137 (505)
                      +.+||.|||..|++.|+++..       +  |.++++.-+ .+|-...|+||.+.++.+.+
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~   62 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR   62 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence            357999999999999976531       1  999999987 89999999999988876543

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.10  E-value=0.0015  Score=61.74  Aligned_cols=50  Identities=30%  Similarity=0.607  Sum_probs=43.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCC------CCcchhccccCCcccccccccccccccCC
Q 046419           32 LKKGPWTAAEDAILTEYVRKHGE------GNWNAVQRNTGLARCGKSCRLRWANHLRP   83 (505)
Q Consensus        32 lkKG~WT~EEDelL~~lV~k~G~------~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p   83 (505)
                      .++..||.|||.+|.+.|-+|-.      ....+|++.+  +||+..|.-||..+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L--~RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL--NRTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--cccHHHhcchHHHHHHH
Confidence            46788999999999999999932      2688999998  59999999999998863

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.06  E-value=0.0013  Score=54.72  Aligned_cols=48  Identities=25%  Similarity=0.583  Sum_probs=33.2

Q ss_pred             cCCCCHHHHHHHHHHHHH--h----C--C-----CCcchhcccc---CCccccccccccccccc
Q 046419           34 KGPWTAAEDAILTEYVRK--H----G--E-----GNWNAVQRNT---GLARCGKSCRLRWANHL   81 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k--~----G--~-----~nW~~IAk~m---~~gRT~kQCR~Rw~n~L   81 (505)
                      |-.||.+|...|++++..  +    +  .     .-|.+||..|   |..|++.||+.||.++.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            357999999999999887  2    1  1     1499999986   56899999999998754

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.00  E-value=0.013  Score=48.06  Aligned_cols=51  Identities=27%  Similarity=0.539  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-----------------CHHHHHhhC-----CCCCHHHHHHHHHHHhhhhhh
Q 046419           87 KGTFSPEEERLIVELHAQLGN-----------------KWARMAAQL-----PGRTDNEIKNYWNTRVKRRHR  137 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~-----------------kWskIAk~L-----pgRT~~qcKnRW~~llkk~~r  137 (505)
                      +..||.+|.+.|+++|++|..                 -|.+|+..|     +.|+..+|+.+|..+.....+
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk   74 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK   74 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            457999999999999998731                 299999997     359999999999988776544

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.82  E-value=0.011  Score=56.76  Aligned_cols=53  Identities=17%  Similarity=0.358  Sum_probs=45.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC-------HHHHHhhCCCCCHHHHHHHHHHHhhhhhhc
Q 046419           85 LKKGTFSPEEERLIVELHAQLGNK-------WARMAAQLPGRTDNEIKNYWNTRVKRRHRQ  138 (505)
Q Consensus        85 lkkg~WT~EED~lLlelV~kyG~k-------WskIAk~LpgRT~~qcKnRW~~llkk~~r~  138 (505)
                      .++..||.|||.+|.+.|.+|+..       ...++..| +||..+|.-||+.++++++..
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee   62 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQE   62 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHH
Confidence            356789999999999999988742       77788888 999999999999999988754

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.40  E-value=0.0043  Score=50.58  Aligned_cols=51  Identities=29%  Similarity=0.567  Sum_probs=32.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC------C--CcchhccccCCcccccccccccccccCCC
Q 046419           34 KGPWTAAEDAILTEYVRKHGE------G--NWNAVQRNTGLARCGKSCRLRWANHLRPN   84 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G~------~--nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~   84 (505)
                      |-+||.|||++|++.|.++..      |  =|.++++..++.+|-.+-|+||...|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            467999999999999977632      2  39999888765777888899999988754

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.27  E-value=0.019  Score=59.63  Aligned_cols=48  Identities=25%  Similarity=0.455  Sum_probs=43.5

Q ss_pred             CCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419           88 GTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        88 g~WT~EED~lLlelV~kyG-~kWskIAk~LpgRT~~qcKnRW~~llkk~  135 (505)
                      ..|+.+|+.+|+++...+| ++|..||.+++.|+..+||.+|.++....
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~es  112 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDES  112 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHhhc
Confidence            4699999999999999999 78999999999999999999998766543

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.17  E-value=0.0053  Score=63.63  Aligned_cols=50  Identities=22%  Similarity=0.500  Sum_probs=45.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccC
Q 046419           32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLR   82 (505)
Q Consensus        32 lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~   82 (505)
                      +----|+.+|+-+|+++..-.|.|||..||..+| .|+...|+++|..++.
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            3345799999999999999999999999999999 9999999999988765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.97  E-value=0.0059  Score=50.07  Aligned_cols=49  Identities=27%  Similarity=0.468  Sum_probs=39.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC----------------CCcchhcccc----CCccccccccccccccc
Q 046419           33 KKGPWTAAEDAILTEYVRKHGE----------------GNWNAVQRNT----GLARCGKSCRLRWANHL   81 (505)
Q Consensus        33 kKG~WT~EEDelL~~lV~k~G~----------------~nW~~IAk~m----~~gRT~kQCR~Rw~n~L   81 (505)
                      ++..||.+|.++|+++|.+|..                ..|.+|+..+    +..|+..||+.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999822                3599998876    22689999999998764

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=94.90  E-value=0.066  Score=63.75  Aligned_cols=102  Identities=15%  Similarity=0.313  Sum_probs=77.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccc-------ccccc----------------------------
Q 046419           36 PWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRL-------RWANH----------------------------   80 (505)
Q Consensus        36 ~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~-------Rw~n~----------------------------   80 (505)
                      -|+.-|=..++.+..+||..+-..||..|. +++...++.       ||..+                            
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            388888888888889999888899999997 788666552       22211                            


Q ss_pred             -------------c--CCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhC------------CCCCHHHHHHHHHHHh
Q 046419           81 -------------L--RPNLKKGTFSPEEERLIVELHAQLG-NKWARMAAQL------------PGRTDNEIKNYWNTRV  132 (505)
Q Consensus        81 -------------L--~p~lkkg~WT~EED~lLlelV~kyG-~kWskIAk~L------------pgRT~~qcKnRW~~ll  132 (505)
                                   -  ....++..||+|||..|+-++.+|| .+|.+|-..+            ..||...|..|...++
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                         0  0122345699999999999999999 6799995553            5799999999999988


Q ss_pred             hhhhhc
Q 046419          133 KRRHRQ  138 (505)
Q Consensus       133 kk~~r~  138 (505)
                      +-..+.
T Consensus       985 ~~~~~e  990 (1033)
T PLN03142        985 RLIEKE  990 (1033)
T ss_pred             HHHHHH
Confidence            876553

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.20  E-value=0.015  Score=55.65  Aligned_cols=50  Identities=26%  Similarity=0.587  Sum_probs=40.6

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCC------CcchhccccCCcccccccccccccccC
Q 046419           31 QLKKGPWTAAEDAILTEYVRKHGEG------NWNAVQRNTGLARCGKSCRLRWANHLR   82 (505)
Q Consensus        31 ~lkKG~WT~EEDelL~~lV~k~G~~------nW~~IAk~m~~gRT~kQCR~Rw~n~L~   82 (505)
                      ..++..||.|||.+|.+.|-+|+..      ...+++..+  +|+..+|..||.-+++
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L--~rt~aac~fRwNs~vr   57 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL--KRTAAACGFRWNSVVR   57 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--hhhHHHHHhHHHHHHH
Confidence            3577899999999999999999652      356677777  5999999999966654

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.80  E-value=0.43  Score=40.12  Aligned_cols=47  Identities=30%  Similarity=0.630  Sum_probs=36.1

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------CHHHHHhhCC-----CCCHHHHHHHHHHHhhhh
Q 046419           89 TFSPEEERLIVELHAQL---GN----------KWARMAAQLP-----GRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        89 ~WT~EED~lLlelV~ky---G~----------kWskIAk~Lp-----gRT~~qcKnRW~~llkk~  135 (505)
                      .||.++++.|++++.+.   |+          .|..|++.|.     ..+..||++||..+.+.-
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y   65 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY   65 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence            49999999999998553   21          2999999882     357899999998665543

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=91.51  E-value=0.34  Score=50.59  Aligned_cols=52  Identities=17%  Similarity=0.344  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----------CCHHHHHhhC----CCCCHHHHHHHHHHHhhhhhhc
Q 046419           87 KGTFSPEEERLIVELHAQLG----------NKWARMAAQL----PGRTDNEIKNYWNTRVKRRHRQ  138 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG----------~kWskIAk~L----pgRT~~qcKnRW~~llkk~~r~  138 (505)
                      ...|+.+|-..||++..+..          ..|..||+.+    --|++.+||.||.++.++..+.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~  119 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKE  119 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence            46899999999999886542          2499999976    2399999999999888776543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=91.41  E-value=0.37  Score=43.74  Aligned_cols=54  Identities=28%  Similarity=0.506  Sum_probs=43.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHhhC------------CCCCHHHHHHHHHHHhhhhhh
Q 046419           84 NLKKGTFSPEEERLIVELHAQLGN----KWARMAAQL------------PGRTDNEIKNYWNTRVKRRHR  137 (505)
Q Consensus        84 ~lkkg~WT~EED~lLlelV~kyG~----kWskIAk~L------------pgRT~~qcKnRW~~llkk~~r  137 (505)
                      ..++..||+|||.-|+-++.+||-    .|.+|-..+            ..||...|..|...+++-..+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~K  115 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIEK  115 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHHH
Confidence            456778999999999999999996    599887764            579999999999998876543

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=90.33  E-value=0.43  Score=50.94  Aligned_cols=46  Identities=17%  Similarity=0.272  Sum_probs=42.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419           89 TFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        89 ~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk  134 (505)
                      +|+.+|-+++.+++..+|-.++.|+..||.|.+.|||.+|.+--|+
T Consensus       367 ~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         367 RWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            6999999999999999999999999999999999999999764444

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=88.30  E-value=0.39  Score=50.15  Aligned_cols=48  Identities=25%  Similarity=0.450  Sum_probs=37.8

Q ss_pred             cCCCCHHHHHHHHHHHHHh----CC-----CCcchhcccc---CCccccccccccccccc
Q 046419           34 KGPWTAAEDAILTEYVRKH----GE-----GNWNAVQRNT---GLARCGKSCRLRWANHL   81 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~----G~-----~nW~~IAk~m---~~gRT~kQCR~Rw~n~L   81 (505)
                      -..|+.+|-..|+++..+.    ..     .-|.+||+.+   |..|++.||+.||.++.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            3789999999999987644    11     2599999843   55799999999988743

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=88.10  E-value=0.64  Score=49.84  Aligned_cols=86  Identities=17%  Similarity=0.302  Sum_probs=63.3

Q ss_pred             CcchhccccCCcccccccccccccccCCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCCHH
Q 046419           56 NWNAVQRNTGLARCGKSCRLRWANHLRPN-------------------------LKKGTFSPEEERLIVELHAQLGNKWA  110 (505)
Q Consensus        56 nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~-------------------------lkkg~WT~EED~lLlelV~kyG~kWs  110 (505)
                      .|+.+.=..+ .|...-...||.+.-++.                         ++...||+||-+.|.+|.+.|.-+|-
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            5666644443 566666667777763321                         13346999999999999999999999


Q ss_pred             HHHhh-----CCC-CCHHHHHHHHHHHhhhhhhcCCCC
Q 046419          111 RMAAQ-----LPG-RTDNEIKNYWNTRVKRRHRQGLPL  142 (505)
Q Consensus       111 kIAk~-----Lpg-RT~~qcKnRW~~llkk~~r~~~~~  142 (505)
                      -||..     ++. ||-.++|.||...-++..+...+.
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s  191 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPS  191 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCC
Confidence            99988     455 999999999998777766554433

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=84.60  E-value=2.6  Score=46.19  Aligned_cols=52  Identities=17%  Similarity=0.321  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 046419           86 KKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHR  137 (505)
Q Consensus        86 kkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~r  137 (505)
                      -...||.||-.++-+++..||.++.+|-+.|+.|+-..+...|....|.+..
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~~  237 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTREY  237 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhhH
Confidence            3557999999999999999999999999999999999999998877666543

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=83.20  E-value=2.9  Score=31.61  Aligned_cols=42  Identities=29%  Similarity=0.396  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419           92 PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        92 ~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk  134 (505)
                      ++++..++.++...|-.|.+||+.+ |.+...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4667778888888888999999999 99999999998776654

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=82.01  E-value=1.8  Score=46.47  Aligned_cols=65  Identities=14%  Similarity=0.158  Sum_probs=51.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCC--------CCCCCCCHHHHHHHH
Q 046419           33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPN--------LKKGTFSPEEERLIV   99 (505)
Q Consensus        33 kKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~--------lkkg~WT~EED~lLl   99 (505)
                      .--+|+.+|-+++.+++...|. ++.-|+.++| +|..+|++.+|.+--+.+        ..+.++..+|..++.
T Consensus       364 ~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP-~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k~~  436 (507)
T COG5118         364 GALRWSKKEIEKFYKALSIWGT-DFSLISSLFP-NRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNKLR  436 (507)
T ss_pred             CCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcC-chhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhhHH
Confidence            3457999999999999999999 9999999999 999999999887643221        124467777765543

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=80.17  E-value=14  Score=39.79  Aligned_cols=43  Identities=23%  Similarity=0.282  Sum_probs=38.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCHHHH-HhhCCCCCHHHHHHHHHHH
Q 046419           89 TFSPEEERLIVELHAQLGNKWARM-AAQLPGRTDNEIKNYWNTR  131 (505)
Q Consensus        89 ~WT~EED~lLlelV~kyG~kWskI-Ak~LpgRT~~qcKnRW~~l  131 (505)
                      .|+++|-..+.+.++.||+++..| +.+++.|+--.|-..|...
T Consensus       279 ~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlW  322 (445)
T KOG4329|consen  279 GWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLW  322 (445)
T ss_pred             cCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHh
Confidence            699999999999999999999999 5668999999998877643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	505
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-26
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		9e-26
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		2e-25
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		3e-25
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		3e-25
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		5e-19
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		2e-11
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		3e-11
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		3e-11
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		7e-11
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		5e-07
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		6e-07
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		1e-06

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  117 bits (292), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 32  LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFS 91
           L KGPWT  ED  + E V+K+G   W  + ++    R GK CR RW NHL P +KK +++
Sbjct: 5   LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 92  PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
            EE+R+I E H  LGN+WA +A  LPGRTDN +KN+WN+ +KR+
Sbjct: 64  EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  114 bits (286), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 31  QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTF 90
           +L KGPWT  ED  + E+V+K+G   W+ + ++    R GK CR RW NHL P +KK ++
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 82
Query: 91  SPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
           + EE+R+I + H +LGN+WA +A  LPGRTDN +KN+WN+ ++R+
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 31  QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTF 90
           +L KGPWT  ED  + + V+K+G   W+ + ++    R GK CR RW NHL P +KK ++
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 59
Query: 91  SPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
           + EE+R+I + H +LGN+WA +A  LPGRTDN IKN+WN+ ++R+
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/104 (47%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 32  LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFS 91
           L KGPWT  ED  + + V+K+G   W+ + ++    R GK CR RW NHL P +KK +++
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 92  PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
            EE+R+I + H +LGN+WA +A  LPGRTDN IKN+WN+ ++R+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 31  QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTF 90
           +L KGPWT  ED  + + V+K+G   W+ + ++    R GK CR RW NHL P +KK ++
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113
Query: 91  SPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
           + EE+R+I + H +LGN+WA +A  LPGRTDN IKN+WN+ ++R+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 5/104 (4%)
Query: 34  KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLA--RCGKSCRLRWANHLRPNLKKGTFS 91
           KGP+T AED ++ EYV+++G  NW    R T     R  K CR RW NHL P + K  ++
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 92  PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
           PEE+  I   + +LG+KW+ +A  +PGRTDN IKN WN+ + +R
Sbjct: 59  PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 33  KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSP 92
           KK  +T  ED +L   V +HG  +W  +   T   R  + CR RW N+L P++    ++ 
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHGS-DWKMIAA-TFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 93  EEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNT 130
           EE+ L+V+   + G +WA +A   PGRTD  IKN W T
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 34  KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPE 93
           K  +T  ED  L + V ++G  +W  + +   + R  + CR RW N++ P L+   +SPE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 94  EERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQ 138
           E+ L+ + +A+ G KW +++  L  R+DN I+N W    + R + 
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 41/51 (80%)
Query: 85  LKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
           +KK +++ EE+R+I + H +LGN+WA +A  LPGRTDN IKN+WN+ ++R+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 41/51 (80%)
Query: 85  LKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
           +KK +++ EE+R++ + H +LGN+WA +A  LPGRTDN IKN+WN+ ++R+
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83
          L KGPWT  ED  + E V+K+G   W+ + ++    R GK CR RW NHL P
Sbjct: 1  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83
          L KGPWT  ED  L + V+K+G   W+ + ++    R GK CR RW NHL P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83
          L KGPWT  ED  + + V+K+G   W+ + ++    R GK CR RW NHL P
Sbjct: 1  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	505
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	1e-66
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	8e-65
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	4e-64
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	1e-58
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	8e-57
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-04
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	1e-56
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-28
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-06
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	3e-27
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	4e-05
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	6e-22
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	7e-08
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	7e-17
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	8e-06
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-14
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	6e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	2e-11
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	3e-11
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-05
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	9e-11
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-04
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	1e-10
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	1e-04
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	6e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-09
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-07
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	6e-09
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	1e-08
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	7e-08
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	4e-04
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	4e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	5e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	6e-05
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-05
1v10_A	521	Laccase; multicopper blue oxidase, oxidase; 1.7A {	3e-04
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	5e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	5e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  208 bits (533), Expect = 1e-66
 Identities = 49/105 (46%), Positives = 73/105 (69%), Gaps = 1/105 (0%)

Query: 31  QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTF 90
           +L KGPWT  ED  + + V+K+G   W+ + ++    R GK CR RW NHL P +KK ++
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 91  SPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
           + EE+R+I + H +LGN+WA +A  LPGRTDN IKN+WN+ ++R+
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  205 bits (523), Expect = 8e-65
 Identities = 49/104 (47%), Positives = 73/104 (70%), Gaps = 1/104 (0%)

Query: 32  LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFS 91
           L KGPWT  ED  + E+V+K+G   W+ + ++    R GK CR RW NHL P +KK +++
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 83

Query: 92  PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
            EE+R+I + H +LGN+WA +A  LPGRTDN +KN+WN+ ++R+
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  203 bits (518), Expect = 4e-64
 Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 2/126 (1%)

Query: 34  KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPE 93
           KGP+T AED ++ EYV+++G  NW  +       R  K CR RW NHL P + K  ++PE
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 94  EERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQH 153
           E+  I   + +LG+KW+ +A  +PGRTDN IKN WN+ + +R       +   + P    
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTN-SNHKEILLPDRSK 119

Query: 154 QHQHQN 159
           + +  +
Sbjct: 120 KRKAAD 125

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  189 bits (482), Expect = 1e-58
 Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 32  LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFS 91
            KK  +T  ED +L   V +HG  +W  +       R  + CR RW N+L P++    ++
Sbjct: 9   AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWT 66

Query: 92  PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQH 151
            EE+ L+V+   + G +WA +A   PGRTD  IKN W T   +             Q Q 
Sbjct: 67  AEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIP---------QTQQ 117

Query: 152 QHQHQHQNH 160
             +H H +H
Sbjct: 118 MLEHHHHHH 126

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  185 bits (472), Expect = 8e-57
 Identities = 49/104 (47%), Positives = 72/104 (69%), Gaps = 1/104 (0%)

Query: 32  LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFS 91
           L KGPWT  ED  + + V+K+G   W+ + ++    R GK CR RW NHL P +KK +++
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 114

Query: 92  PEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR 135
            EE+R+I + H +LGN+WA +A  LPGRTDN IKN+WN+ ++R+
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 84  NLKKGTFSPEEERLIVELHAQLGNK-WARMAAQLPGRTDNEIKNYW 128
           +L K  ++ EE+  + +L  Q G   W  +A  LP RTD + ++ W
Sbjct: 3   HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 48

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  183 bits (466), Expect = 1e-56
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 1/105 (0%)

Query: 34  KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPE 93
           K  +T  ED  L + V ++G  +W  + +     R  + CR RW N++ P L+   +SPE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 94  EERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQ 138
           E+ L+ + +A+ G KW +++  L  R+DN I+N W    + R + 
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  105 bits (265), Expect = 3e-28
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 26 GEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNL 85
          G  G   K G W   ED IL   V K+G+  W+ +       +  K C+ RW   L P++
Sbjct: 1  GSSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSI 59

Query: 86 KKGTFSPEEE 95
          KK  +S    
Sbjct: 60 KKTEWSGPSS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 9/41 (21%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 82  RPNLKKGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTD 121
             + K G +   E+ ++     + G N+W+R+A+ L  ++ 
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSA 44

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  102 bits (257), Expect = 3e-27
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83
          L KGPWT  ED  L + V+K+G   W+ + ++    R GK CR RW NHL P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNP 51

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 85  LKKGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRT 120
           L KG ++ EE++ +++L  + G  +W+ +A  L GR 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 88.0 bits (219), Expect = 6e-22
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83
          L K  WT  ED  L + V ++G  +W  +       R    C+ RW   L P
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 85  LKKGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWN 129
           L K  ++ EE+  + +L  Q G + W  +A  LP RTD + ++ W 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 46

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 73.8 bits (182), Expect = 7e-17
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLK 86
            K  WT  ED  L   VR+ G+ +W  +  +    R  + C+ RW   L     
Sbjct: 6  SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 42.2 bits (100), Expect = 8e-06
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 82  RPNLKKGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTD 121
             +  K  ++ EE+  +  L  Q G   W  +A+  P RTD
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTD 43

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLA-RCGKSCRLRWANHLR 82
          K+  W   ED  L   VRK+GEGNW+ +  +     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 86  KKGTFSPEEERLIVELHAQLGN-KWARMAAQLP--GRTDNEIKNYWNTRVKRR 135
           K+  +  EE++ +     + G   W+++        RT   +K+ W T  K +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 33  KKGPWTAAEDAILTEYVRKHGEGNWNAVQRN---TGLARCGKSCRLRWANHLR-----PN 84
            + P++ AE   L + V K G G W  V+         R     + +W   +      P 
Sbjct: 12  IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 85  LKKGTFSPEEERL-IVELHAQLGNKWARMAAQ 115
            ++G   P+E    ++  H     +  +   Q
Sbjct: 72  QRRGEPVPQELLNRVLNAHGYWTQQQMQQLQQ 103

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLA-RCGKSCRLRWANHLRPNL 85
          KK  WT  E   +   V+K+GEGNW A+ +N     R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 86  KKGTFSPEEERLIVELHAQLGN-KWARMAAQLP--GRTDNEIKNYWNTRVK 133
           KK  ++ EE   +     + G   WA ++   P   RT   IK+ W T  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 51

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 56.6 bits (137), Expect = 9e-11
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLA-RCGKSCRLRWANHLRPNL 85
          KK  WT  E   +   V+K+GEGNW A+ +N     R     + RW    R  +
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 78  ANHLRPNLKKGTFSPEEERLIVELHAQLGN-KWARMAAQLP--GRTDNEIKNYWNTRVK 133
            +      KK  ++ EE   +     + G   WA ++   P   RT   IK+ W T  +
Sbjct: 2   EDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLA-RCGKSCRLRWANHLRPNLKKGTFS 91
          K+  W   ED  L   VRK+GEGNW+ +  +     R     + RW    +  L      
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS--D 66

Query: 92 PEE 94
           E+
Sbjct: 67 SED 69

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 86  KKGTFSPEEERLIVELHAQLGN-KWARMAAQLP--GRTDNEIKNYWNTRVKRRHRQ 138
           K+  +  EE++ +     + G   W+++        RT   +K+ W T  K +   
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 55.9 bits (134), Expect = 6e-10
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 27  EGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQR---NTGLARCGKSCRLRWAN---- 79
           + G +  + P+T AE  +L E V   G G W  V+         R     + +W      
Sbjct: 24  DFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83

Query: 80  -HLRPNLKKGTFSPEEERL-IVELHAQLGNKWARMAAQL 116
             + P  ++G   P+E    ++   A      +     L
Sbjct: 84  ASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSSGRIVTL 122

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)

Query: 26 GEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNL 85
          G  G   KK  W+  E+  L    +      W  +    G  R    C   +   L    
Sbjct: 1  GSSGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAPIIG--RTAAQCLEHYEFLLDKAA 57

Query: 86 KK 87
          ++
Sbjct: 58 QR 59

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 83  PNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWN 129
            + KK  +S EEE  ++ L   +  +W R  A + GRT  +   ++ 
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQW-RTIAPIIGRTAAQCLEHYE 50

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 53.3 bits (127), Expect = 6e-09
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 9/88 (10%)

Query: 33  KKGPWTAAEDAILTEYVRKHGEGNWNAVQR---NTGLARCGKSCRLRWANHLR-----PN 84
            + P++ AE   L E V   G G W  V+    +    R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 85  LKKGTFSPEEERLIV-ELHAQLGNKWAR 111
            ++G   P++    V   HA    +  +
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQGK 103

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 51.5 bits (123), Expect = 1e-08
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 36  PWTAAEDAILTEYVRKHGEGNWNAVQRN---TGLARCGKSCRLRWANHLR-----PNLKK 87
           P++ AE   L E V   G G W  V+         R     + +W   +      P  ++
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 88  GTFSPEEERL-IVELHAQLGNK 108
           G   P++    ++  HA    +
Sbjct: 62  GEPVPQDLLDRVLAAHAYWSQQ 83

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 23 GSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL 81
          GS G  G       WTA E+  L E V   G GNW  V       +  + C   +  + 
Sbjct: 1  GSSGSSG----DPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 86  KKGTFSPEEERLIVELHAQLGNK-WARMAAQLPGRTDNEIKNYWNT 130
              +++ +EE  ++E     G   W  +A Q+  +T  E + ++  
Sbjct: 7   GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 52

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 15/55 (27%), Positives = 21/55 (38%)

Query: 26 GEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANH 80
          G  G       W A E+ +L +     G GNW  +    G AR  + CR  +   
Sbjct: 1  GSSGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 74  RLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVK 133
                +  R NL    ++ EE     +   + G  W+ +A  +  +T ++ KN++     
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYF---N 59

Query: 134 RRHRQGLPLYPPEIQPQHQHQHQHQNHQQ 162
            + RQ L     + + + + +   +  ++
Sbjct: 60  YKKRQNLDEILQQHKLKMEKERNARRKKK 88

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 19/138 (13%), Positives = 36/138 (26%), Gaps = 8/138 (5%)

Query: 149 PQHQHQHQHQNHQQSSHSHHSYHSQPSTPTTPTSSFSFPIAATTPTTPTGGHHQHHS--- 205
             H H H   + +  S   +S  + P+   +  +    P       +P   H    +   
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 206 -LHHHFPPPCYSRSPTPSSLPPTPPPLSPGLRSPHQ----PAFPTLTLFDTNTNTNANNN 260
            ++   PP     SP        P   + G  +       P  P  +  D       N  
Sbjct: 62  PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121

Query: 261 SNAANSSVMSSNNISNTF 278
                    +  + +   
Sbjct: 122 LKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 3/136 (2%)

Query: 155 HQHQNHQQSSHSHHSYHSQPSTPTTPTSSFSFPIAATTPTTPTGGHHQHHSLHHHFPPPC 214
             H +H              S+ T+PT   S    A     P+ G         H P   
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSM---AAPSLHPSLGPGIGSPGQLHSPIST 58

Query: 215 YSRSPTPSSLPPTPPPLSPGLRSPHQPAFPTLTLFDTNTNTNANNNSNAANSSVMSSNNI 274
            S        P +      G  S   P  PTL     +   ++  N  +++  +     +
Sbjct: 59  LSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118

Query: 275 SNTFNMPRTPPLLQNP 290
           +    +P  P      
Sbjct: 119 NGVLKVPAHPSGNMAS 134

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 83  PNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQG 139
                G ++PEE   + EL  + GN WA + A L GR+ + +K+     +K     G
Sbjct: 19  DRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL-MKDTCNTG 73

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 40.3 bits (94), Expect = 6e-05
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKG 88
            G +T  E   L E   KHG  +W  +     L R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAA--LGRSASSVKDRC-RLMKDTCNTG 73

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 31/188 (16%), Positives = 52/188 (27%), Gaps = 27/188 (14%)

Query: 33  KKGPWTAAEDAILTEYVRKHGEG-----NWNAVQRNTGLARCGKSCRLRWANHLRPNLKK 87
            K  +T  ED  + + VRK+         ++ +         G S R R+  +L   L+ 
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEY 65

Query: 88  GTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTR------------VKRR 135
                +  +L+ +     GN                IK  ++                R 
Sbjct: 66  VYEVDKFGKLVRDDD---GNLIKT------KVLPPSIKRKFSADEDYTLAIAVKKQFYRD 116

Query: 136 HRQGLPLYPPEIQPQHQHQHQHQNHQQSSHSHHSYHSQPSTPTTPTSSFSFPIAATTPTT 195
             Q  P     +               +   +H   S+P+     T S   PIA      
Sbjct: 117 LFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKH 176

Query: 196 PTGGHHQH 203
               H  H
Sbjct: 177 FAEEHAAH 184

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 22/185 (11%), Positives = 37/185 (20%), Gaps = 4/185 (2%)

Query: 149 PQHQHQHQHQNHQQSSHSHHSYHSQPSTPTTPTSSFSFPIAATTPTTPTGGHHQHHSLHH 208
           PQ Q Q+          +       P+           P     P+              
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 209 HFPPPCYSRSPTPSSLPPTPPPLSPGLRSPHQPAFPTLTLFDTNTNTNANNNSNAANSSV 268
           H      + S     L   P         P  P                   + A     
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGT----PLQQQQQPMAAPAYGQPS 125

Query: 269 MSSNNISNTFNMPRTPPLLQNPPRFKRFHSDTSINTFAANQNDINNNNNINSSSSFQGSN 328
            +        N      LL   P      +          +  +  +   N+S  +  S 
Sbjct: 126 AAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRST 185

Query: 329 NFSMP 333
             ++P
Sbjct: 186 LNAVP 190

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 42/215 (19%), Positives = 70/215 (32%), Gaps = 3/215 (1%)

Query: 163  SSHSHHSYHSQPSTPTTPTSSFSFPIAATTPTTPTGGHHQHHSLHHHFPPPCYSRSPTPS 222
            S   +     +     +P        A     T  GG     +            SP   
Sbjct: 1477 SGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFG 1536

Query: 223  SLPPTPPPLSPGLRSPHQPAF-PTLTLF-DTNTNTNANNNSNAANSSVMSSNNISNTFNM 280
               P   P SP   SP  PA+ PT   +  T+ + +  + S +  S   S  + S +   
Sbjct: 1537 VSSPGFSPTSPT-YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1595

Query: 281  PRTPPLLQNPPRFKRFHSDTSINTFAANQNDINNNNNINSSSSFQGSNNFSMPFLPFFRS 340
            P   P   +       +S TS +    + +    + + + +S      + S        S
Sbjct: 1596 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1655

Query: 341  PSSPSLLTSPTSNCNTSAFPSATTKLLSHPSFSFG 375
            P+SP+   +  S   TS   S T+   S  S S+ 
Sbjct: 1656 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1690

>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 Length = 521

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 23/114 (20%), Positives = 34/114 (29%), Gaps = 17/114 (14%)

Query: 218 SPTPSSLPPTPPPLSP--------GLRSPHQPAFPTLTLFDTNTNTNANNNSNAANSSVM 269
                + P T               L +P  P  P     D N N     N+  A+ ++ 
Sbjct: 308 QGAAVAEPTTSQNSGTALNEANLIPLINPGAPGNPVPGGADINLNLRIGRNATTADFTI- 366

Query: 270 SSNNISNTFNMPRTPPLLQ---NPPRFKRFHSDTSINTFAANQN-DINNNNNIN 319
             N     F  P  P LLQ               ++ +  ANQ  +I+     N
Sbjct: 367 --NGAP--FIPPTVPVLLQILSGVTNPNDLLPGGAVISLPANQVIEISIPGGGN 416

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 17 GLNVSDGSGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLR 76
          G + S G+  +         WT  E  +L E +  +   +WN V  + G +R    C L 
Sbjct: 1  GSSGSSGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILH 58

Query: 77 W 77
          +
Sbjct: 59 F 59

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 14/65 (21%), Positives = 30/65 (46%)

Query: 82  RPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLP 141
             +     ++ EE+ L  +  A+ G +W +++  +  RT  ++K+Y     K + + GL 
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLD 63

Query: 142 LYPPE 146
              P 
Sbjct: 64  KETPN 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	505
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.97
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.97
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.96
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.79
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.78
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.69
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.63
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.62
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.61
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.61
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.6
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.58
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.58
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.56
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.55
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.55
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.51
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.51
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.5
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.48
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.46
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.46
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.45
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.45
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.44
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.44
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.44
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.43
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.42
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.41
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.39
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.38
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.36
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.32
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.3
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.3
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.28
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.27
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.27
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.25
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.23
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.21
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.19
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.82
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.11
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.11
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.1
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.09
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.06
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.03
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.0
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.87
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.8
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.77
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.7
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.7
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.67
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.64
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.62
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.43
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.38
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.33
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.28
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.16
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.14
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.96
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.91
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.9
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.9
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.78
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.76
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.85
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.6
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.5
2crg_A	70	Metastasis associated protein MTA3; transcription	97.45
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.42
2crg_A	70	Metastasis associated protein MTA3; transcription	97.15
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.12
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.09
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.0
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.78
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.77
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.68
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.26
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	94.91
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	95.18
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	94.26
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	91.97
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	89.81
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	89.12
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	88.69
1u78_A	141	TC3 transposase, transposable element TC3 transpos	81.54

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.97  E-value=1.9e-31  Score=229.72  Aligned_cols=104  Identities=47%  Similarity=0.949  Sum_probs=99.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHH
Q 046419           31 QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWA  110 (505)
Q Consensus        31 ~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~kWs  110 (505)
                      +++||+||+|||++|+++|++||..+|.+||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            47899999999999999999999989999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419          111 RMAAQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus       111 kIAk~LpgRT~~qcKnRW~~llkk~  135 (505)
                      .||+.|+|||+++|++||+.+++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999998875

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.97  E-value=3.3e-31  Score=229.74  Aligned_cols=104  Identities=32%  Similarity=0.612  Sum_probs=100.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHH
Q 046419           34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMA  113 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIA  113 (505)
                      ||+||+|||++|+++|.+||.++|.+||+.|+ +|+++|||+||.++|+|.+++++||+|||++|+++|.+||.+|+.||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHhhhhhhc
Q 046419          114 AQLPGRTDNEIKNYWNTRVKRRHRQ  138 (505)
Q Consensus       114 k~LpgRT~~qcKnRW~~llkk~~r~  138 (505)
                      +.|+|||+++||+||+.++++..+.
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999999887654

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=7.8e-31  Score=234.97  Aligned_cols=107  Identities=42%  Similarity=0.798  Sum_probs=103.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHH
Q 046419           34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMA  113 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIA  113 (505)
                      ||+||+|||++|+++|.+||.++|.+||+.|+ +|+++|||+||.++|+|.+++++||+|||++|+++|.+||.+|+.||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            79999999999999999999889999999998 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 046419          114 AQLPGRTDNEIKNYWNTRVKRRHRQGLP  141 (505)
Q Consensus       114 k~LpgRT~~qcKnRW~~llkk~~r~~~~  141 (505)
                      +.|+|||+++|++||+.++++++..+.+
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~  108 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSN  108 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999998876653

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=8.1e-31  Score=233.60  Aligned_cols=123  Identities=41%  Similarity=0.764  Sum_probs=102.5

Q ss_pred             cccCCCCCCCCC---CCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCC
Q 046419           12 ESGVGGLNVSDG---SGGEGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKG   88 (505)
Q Consensus        12 ~s~~gg~~~~~~---s~~~~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg   88 (505)
                      +..++|+....+   +.....+.+++|+||+|||++|+++|++||.++|.+||+.|+ +|+++||++||.++|+|.++++
T Consensus         2 a~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~   80 (128)
T 1h8a_C            2 EAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKT   80 (128)
T ss_dssp             --------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCS
T ss_pred             ccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccc
Confidence            344455554443   333457789999999999999999999999889999999998 9999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419           89 TFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        89 ~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~  135 (505)
                      +||+|||++|+++|++||.+|++||+.|+|||+++||+||+.+++++
T Consensus        81 ~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           81 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             CCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             cCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999998875

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.96  E-value=1.3e-30  Score=232.28  Aligned_cols=105  Identities=34%  Similarity=0.628  Sum_probs=101.2

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 046419           29 GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNK  108 (505)
Q Consensus        29 ~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~k  108 (505)
                      +..++||+||+|||++|+++|++||. +|.+||+.|+ +|+++|||+||.++|+|.+++++||+|||++|+++|++||.+
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~   83 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ   83 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence            56789999999999999999999999 9999999998 999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419          109 WARMAAQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus       109 WskIAk~LpgRT~~qcKnRW~~llkk~  135 (505)
                      |++||+.|+|||+.+||+||+.++++.
T Consensus        84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           84 WAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999998875

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=4.3e-30  Score=236.52  Aligned_cols=133  Identities=38%  Similarity=0.704  Sum_probs=104.6

Q ss_pred             cccCCCcceecccCCCCCCCCCCCC---CCCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccc
Q 046419            2 LLGNSNGEQLESGVGGLNVSDGSGG---EGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWA   78 (505)
Q Consensus         2 ~~g~~~~~~~~s~~gg~~~~~~s~~---~~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~   78 (505)
                      .+|..+|..++..++|+....+...   .-.+.+++|+||+|||++|+++|++||..+|.+||+.|+ +|+++||++||.
T Consensus        23 ~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~  101 (159)
T 1h89_C           23 QNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWH  101 (159)
T ss_dssp             --------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHH
Confidence            3677899999999988765544322   346688999999999999999999999878999999998 999999999999


Q ss_pred             cccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419           79 NHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        79 n~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~  135 (505)
                      ++|+|.+++++||+|||++|+++|.+||.+|++||+.|+|||+++||+||+.+++++
T Consensus       102 ~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          102 NHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             HTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             HHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999998875

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=7.9e-29  Score=228.08  Aligned_cols=124  Identities=24%  Similarity=0.533  Sum_probs=75.5

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-CH
Q 046419           31 QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGN-KW  109 (505)
Q Consensus        31 ~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~-kW  109 (505)
                      +++||+||+|||++|+++|++||.++|.+||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            47899999999999999999999889999999998 99999999999999999999999999999999999999996 69


Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCCCCCCCchhhhhh
Q 046419          110 ARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQHQH  155 (505)
Q Consensus       110 skIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~~~e~q~~~~~~~  155 (505)
                      ..||+.|+|||+.||++||..++.+.++++.|+..++......+..
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~  127 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR  127 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999988888877766555444433

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=1.5e-20  Score=151.41  Aligned_cols=66  Identities=32%  Similarity=0.607  Sum_probs=63.7

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHHHH
Q 046419           29 GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEE   95 (505)
Q Consensus        29 ~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED   95 (505)
                      +..+++|+||+|||++|+++|++||..+|.+||+.|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            5688999999999999999999999779999999999 99999999999999999999999999997

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.78  E-value=3.4e-20  Score=164.98  Aligned_cols=96  Identities=21%  Similarity=0.466  Sum_probs=66.6

Q ss_pred             hccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhc
Q 046419           60 VQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKRRHRQ  138 (505)
Q Consensus        60 IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk~~r~  138 (505)
                      ||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|++||. +|.+||+.|+||++.||++||..++.+.+++
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            788898 99999999999999999999999999999999999999996 6999999999999999999999999999888


Q ss_pred             CCCCCCCCCCchhhhhhh
Q 046419          139 GLPLYPPEIQPQHQHQHQ  156 (505)
Q Consensus       139 ~~~~~~~e~q~~~~~~~~  156 (505)
                      +.|+.+++......+...
T Consensus        80 ~~WT~eEd~~L~~~~~~~   97 (128)
T 1h8a_C           80 TSWTEEEDRIIYQAHKRL   97 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHH
Confidence            888887765554444433

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.69  E-value=1.3e-17  Score=162.88  Aligned_cols=106  Identities=20%  Similarity=0.295  Sum_probs=92.7

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCC-----cchhccccCCcccccccccccccccCCCCC-----------------
Q 046419           29 GVQLKKGPWTAAEDAILTEYVRKHGEGN-----WNAVQRNTGLARCGKSCRLRWANHLRPNLK-----------------   86 (505)
Q Consensus        29 ~~~lkKG~WT~EEDelL~~lV~k~G~~n-----W~~IAk~m~~gRT~kQCR~Rw~n~L~p~lk-----------------   86 (505)
                      ...++|++||+|||++|+++|+++|..+     |.+||+.|+ |||+.|||.||..+|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            4567899999999999999999998743     999999999 99999999999999999886                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHHH-h------------------------------------------------
Q 046419           87 ------------KGTFSPEEERLIVELHAQ-L------------------------------------------------  105 (505)
Q Consensus        87 ------------kg~WT~EED~lLlelV~k-y------------------------------------------------  105 (505)
                                  +..||.|||-.|...+++ |                                                
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        789999999999999887 1                                                


Q ss_pred             -----CC----CHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419          106 -----GN----KWARMAAQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus       106 -----G~----kWskIAk~LpgRT~~qcKnRW~~llkk~  135 (505)
                           |.    .|.+||+.+++||.+.+|+||+.+++..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                 11    5999999999999999999999988776

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.63  E-value=5.3e-17  Score=144.49  Aligned_cols=84  Identities=20%  Similarity=0.363  Sum_probs=78.3

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhcccc----CCcccccccccccccccC-----CCCCCC-CCCHHHHH
Q 046419           27 EGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNT----GLARCGKSCRLRWANHLR-----PNLKKG-TFSPEEER   96 (505)
Q Consensus        27 ~~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m----~~gRT~kQCR~Rw~n~L~-----p~lkkg-~WT~EED~   96 (505)
                      ..+...++++||.|||++|+++|++||.++|.+|++.+    + +||..||++||+++++     |.++++ +|++||+.
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~   88 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLD   88 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHH
Confidence            45678899999999999999999999999999999985    5 8999999999999998     888888 99999999


Q ss_pred             HHHHHHHHhCCCHHH
Q 046419           97 LIVELHAQLGNKWAR  111 (505)
Q Consensus        97 lLlelV~kyG~kWsk  111 (505)
                      +|++++..+|++|.+
T Consensus        89 rv~~~h~~~gn~~~~  103 (121)
T 2juh_A           89 RVLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHccchhc
Confidence            999999999999976

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.62  E-value=2.7e-16  Score=128.62  Aligned_cols=60  Identities=25%  Similarity=0.377  Sum_probs=47.8

Q ss_pred             cccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 046419           73 CRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVK  133 (505)
Q Consensus        73 CR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llk  133 (505)
                      +.-||.++|+|.+++++||+|||++|+++|++||.+|++||+.| |||+++||+||+.+.+
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999 9999999999996543

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.61  E-value=3e-16  Score=139.80  Aligned_cols=80  Identities=24%  Similarity=0.387  Sum_probs=73.7

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhcccc----CCccccccccccccccc-----CCCCCCCCCCHHH-HHH
Q 046419           28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNT----GLARCGKSCRLRWANHL-----RPNLKKGTFSPEE-ERL   97 (505)
Q Consensus        28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m----~~gRT~kQCR~Rw~n~L-----~p~lkkg~WT~EE-D~l   97 (505)
                      .+...++++||.|||++|+++|++||.++|.+|++.+    . +||..||++||++++     +|.++++.|++|| +++
T Consensus        25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~  103 (122)
T 2roh_A           25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR  103 (122)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence            4567789999999999999999999999999999874    5 899999999999999     7999999999999 899


Q ss_pred             HHHHHHHhCCC
Q 046419           98 IVELHAQLGNK  108 (505)
Q Consensus        98 LlelV~kyG~k  108 (505)
                      |++++..||++
T Consensus       104 v~~~h~~~g~~  114 (122)
T 2roh_A          104 VLAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHhhH
Confidence            99999999963

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=1.9e-16  Score=123.67  Aligned_cols=58  Identities=26%  Similarity=0.486  Sum_probs=54.2

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCC
Q 046419           28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLK   86 (505)
Q Consensus        28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lk   86 (505)
                      ..+.++|++||+|||++|+++|.+||..+|.+||+.|+ +|+++|||+||.++|+|.++
T Consensus         2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            35678999999999999999999999779999999998 99999999999999999865

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.60  E-value=2e-16  Score=120.26  Aligned_cols=52  Identities=46%  Similarity=0.928  Sum_probs=49.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCC
Q 046419           32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPN   84 (505)
Q Consensus        32 lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~   84 (505)
                      ++||+||+|||++|+++|.+||..+|.+||+.|+ +|+++|||+||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5899999999999999999999878999999998 999999999999999874

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.58  E-value=2.8e-15  Score=121.37  Aligned_cols=60  Identities=22%  Similarity=0.350  Sum_probs=56.6

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCC
Q 046419           81 LRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGL  140 (505)
Q Consensus        81 L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~  140 (505)
                      +.|.+++++||+|||++|+++|++||.+|..||+.|+|||+.|||+||+.++++..+.+.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g~   62 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL   62 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCT
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            467889999999999999999999999999999999999999999999999999887755

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.58  E-value=2.8e-16  Score=119.32  Aligned_cols=52  Identities=31%  Similarity=0.673  Sum_probs=48.4

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCC
Q 046419           32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPN   84 (505)
Q Consensus        32 lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~   84 (505)
                      ++||+||+|||++|+++|++||.++|.+||+.|+ +|+++|||+||.++|+|.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999999999999998 999999999999999874

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=4.1e-15  Score=118.35  Aligned_cols=60  Identities=20%  Similarity=0.316  Sum_probs=57.0

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCC
Q 046419           80 HLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGL  140 (505)
Q Consensus        80 ~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~  140 (505)
                      +|+|.+++++||+|||++|+++|++||.+|.+||+ |+|||+.|||+||+.++++.++++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            68999999999999999999999999999999999 8899999999999999999988653

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=5.8e-15  Score=118.74  Aligned_cols=66  Identities=18%  Similarity=0.319  Sum_probs=61.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCCCCCC
Q 046419           82 RPNLKKGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEI  147 (505)
Q Consensus        82 ~p~lkkg~WT~EED~lLlelV~kyG-~kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~~~e~  147 (505)
                      .+.+++++||+|||++|+++|++|| .+|.+||+.|+|||+.||++||+.+|++.++++.|+..++.
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd~   70 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSSG   70 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhcC
Confidence            4578899999999999999999999 78999999999999999999999999999999988887763

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.55  E-value=9.2e-16  Score=123.20  Aligned_cols=64  Identities=27%  Similarity=0.373  Sum_probs=58.4

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCC-cccccccccccccccCCCCCCCCCC
Q 046419           28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGL-ARCGKSCRLRWANHLRPNLKKGTFS   91 (505)
Q Consensus        28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~-gRT~kQCR~Rw~n~L~p~lkkg~WT   91 (505)
                      .....++++||+|||++|+++|++||.++|.+||+.|++ +|+++|||+||.++|++.+.++..+
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            355778999999999999999999998899999999976 8999999999999999999887654

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.51  E-value=3.3e-15  Score=117.10  Aligned_cols=55  Identities=24%  Similarity=0.402  Sum_probs=51.2

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCC
Q 046419           29 GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPN   84 (505)
Q Consensus        29 ~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~   84 (505)
                      ...+++++||+|||++|+++|++||.++|.+||+.|+ +|+++|||+||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            4578999999999999999999999779999999999 999999999999999754

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.51  E-value=1.7e-14  Score=112.54  Aligned_cols=55  Identities=24%  Similarity=0.436  Sum_probs=51.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhhhh
Q 046419           82 RPNLKKGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNTRVKRRH  136 (505)
Q Consensus        82 ~p~lkkg~WT~EED~lLlelV~kyG-~kWskIAk~LpgRT~~qcKnRW~~llkk~~  136 (505)
                      .|.+++++||+|||++|+++|++|| .+|.+||+.|+|||+.|||+||+.++++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            4678999999999999999999999 599999999999999999999999988754

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.50  E-value=2.8e-15  Score=119.41  Aligned_cols=56  Identities=32%  Similarity=0.538  Sum_probs=49.1

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcchhccccC-CcccccccccccccccCCCCC
Q 046419           31 QLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTG-LARCGKSCRLRWANHLRPNLK   86 (505)
Q Consensus        31 ~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~-~gRT~kQCR~Rw~n~L~p~lk   86 (505)
                      ..+|++||+|||++|+++|++||.++|.+||+.++ .+|+++|||+||++++++.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            45789999999999999999999889999999864 289999999999999987653

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.48  E-value=3.9e-14  Score=107.42  Aligned_cols=50  Identities=30%  Similarity=0.543  Sum_probs=46.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419           85 LKKGTFSPEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        85 lkkg~WT~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk  134 (505)
                      +++++||+|||++|+++|++||. +|.+||+.|+|||+.||++||+.++++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999998 899999999999999999999998864

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.46  E-value=6.7e-14  Score=106.24  Aligned_cols=50  Identities=26%  Similarity=0.660  Sum_probs=46.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419           85 LKKGTFSPEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        85 lkkg~WT~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk  134 (505)
                      +++++||+|||++|+++|.+||. +|.+||+.|+|||+.|||+||..++++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 699999999999999999999998864

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.46  E-value=1.4e-14  Score=112.93  Aligned_cols=52  Identities=25%  Similarity=0.460  Sum_probs=48.1

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccccccccc
Q 046419           30 VQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL   81 (505)
Q Consensus        30 ~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L   81 (505)
                      ..+.+++||+|||++|+++|++||.++|.+||+.|+.+|+++|||+||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            4577899999999999999999997799999999976899999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=7.5e-14  Score=113.52  Aligned_cols=60  Identities=17%  Similarity=0.364  Sum_probs=55.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC------CCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCC
Q 046419           82 RPNLKKGTFSPEEERLIVELHAQLG------NKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLP  141 (505)
Q Consensus        82 ~p~lkkg~WT~EED~lLlelV~kyG------~kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~  141 (505)
                      +|.+++++||+|||++|+++|++||      .+|.+||+.|+|||+.||++||+.++++..+.+.+
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            4678899999999999999999999      68999999999999999999999999998877764

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.45  E-value=1.4e-14  Score=110.60  Aligned_cols=50  Identities=32%  Similarity=0.534  Sum_probs=46.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhccccCC-cccccccccccccccC
Q 046419           33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGL-ARCGKSCRLRWANHLR   82 (505)
Q Consensus        33 kKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~-gRT~kQCR~Rw~n~L~   82 (505)
                      +||+||+|||++|+++|++||.++|..||+.|++ +|+++||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998899999999975 6999999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1e-14  Score=118.66  Aligned_cols=61  Identities=18%  Similarity=0.238  Sum_probs=55.2

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCC-----CCcchhccccCCcccccccccccccccCCCCCCCC
Q 046419           28 GGVQLKKGPWTAAEDAILTEYVRKHGE-----GNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGT   89 (505)
Q Consensus        28 ~~~~lkKG~WT~EEDelL~~lV~k~G~-----~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~   89 (505)
                      .++.+++++||+|||++|+++|++||.     .+|.+||+.|+ +||.+|||+||.++|.+.++.+.
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            367889999999999999999999995     69999999999 99999999999999988766653

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.44  E-value=1.5e-13  Score=110.28  Aligned_cols=59  Identities=19%  Similarity=0.299  Sum_probs=53.6

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhhhhcC
Q 046419           81 LRPNLKKGTFSPEEERLIVELHAQLG-NKWARMAAQLP--GRTDNEIKNYWNTRVKRRHRQG  139 (505)
Q Consensus        81 L~p~lkkg~WT~EED~lLlelV~kyG-~kWskIAk~Lp--gRT~~qcKnRW~~llkk~~r~~  139 (505)
                      ..+..++++||+|||++|+++|++|| ++|..||+.|+  |||+.||++||+.++++.+.++
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~   65 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS   65 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence            34567889999999999999999999 68999999999  9999999999999999876654

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.44  E-value=1.4e-13  Score=105.03  Aligned_cols=49  Identities=22%  Similarity=0.399  Sum_probs=46.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhh
Q 046419           86 KKGTFSPEEERLIVELHAQLG-NKWARMAAQLP--GRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        86 kkg~WT~EED~lLlelV~kyG-~kWskIAk~Lp--gRT~~qcKnRW~~llkk  134 (505)
                      ++++||+|||++|+++|++|| ++|..||+.|+  |||+.||++||..+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 68999999999  99999999999999875

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.43  E-value=1.4e-13  Score=107.73  Aligned_cols=52  Identities=17%  Similarity=0.299  Sum_probs=48.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419           83 PNLKKGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        83 p~lkkg~WT~EED~lLlelV~kyG-~kWskIAk~LpgRT~~qcKnRW~~llkk  134 (505)
                      +.+++++||+|||++|+++|++|| .+|.+||+.|+|||+.|||+||+.++..
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            567899999999999999999999 7999999999999999999999988764

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=9.2e-15  Score=116.29  Aligned_cols=57  Identities=18%  Similarity=0.330  Sum_probs=51.9

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCC
Q 046419           29 GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKG   88 (505)
Q Consensus        29 ~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg   88 (505)
                      .+.++|++||+|||++|+++|++||. +|.+||+ ++ +|+++|||+||.++|++.++++
T Consensus         4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence            56889999999999999999999999 9999999 66 7999999999999998766554

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.41  E-value=1.4e-14  Score=129.56  Aligned_cols=108  Identities=17%  Similarity=0.209  Sum_probs=79.1

Q ss_pred             ccCCCcceecccCCCCCCCCCCCC---CCCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccccccc
Q 046419            3 LGNSNGEQLESGVGGLNVSDGSGG---EGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWAN   79 (505)
Q Consensus         3 ~g~~~~~~~~s~~gg~~~~~~s~~---~~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n   79 (505)
                      +|..+|..++..++|+....+..+   ...+.+++|+||+|||++|+++|.+||. +|..||+.|+ +|+..||+.||.+
T Consensus        20 ~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~   97 (131)
T 3zqc_A           20 NGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNS   97 (131)
T ss_dssp             HCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHH
T ss_pred             hCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHH
Confidence            577899999999988765443222   3466889999999999999999999998 9999999998 9999999999999


Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhC
Q 046419           80 HLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQL  116 (505)
Q Consensus        80 ~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~L  116 (505)
                      +|.+.+..+.|+.+--.    .....+.+|+.|++.|
T Consensus        98 ~l~~~~~~~~~~~~~~~----p~~~kk~~~~~i~k~~  130 (131)
T 3zqc_A           98 SISKRISTNSNHKEILL----PDRSKKRKAADVPKKL  130 (131)
T ss_dssp             TTGGGCCCCTTSCCCCC----CCCC------------
T ss_pred             HHHHHhhcCCCcccccC----chhhhhhhhhhcchhc
Confidence            99999999888766311    1111234588888765

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.39  E-value=4e-14  Score=114.59  Aligned_cols=58  Identities=17%  Similarity=0.307  Sum_probs=53.3

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCC
Q 046419           28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKK   87 (505)
Q Consensus        28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkk   87 (505)
                      ..+.+++|+||+|||++|+++|++||. +|.+||+.|+ +||..||+.||..+|.+..+.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            356889999999999999999999999 9999999999 999999999999998765554

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.38  E-value=5.8e-13  Score=106.04  Aligned_cols=51  Identities=27%  Similarity=0.459  Sum_probs=46.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHHhhhh
Q 046419           85 LKKGTFSPEEERLIVELHAQLG-NKWARMAAQLP--GRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        85 lkkg~WT~EED~lLlelV~kyG-~kWskIAk~Lp--gRT~~qcKnRW~~llkk~  135 (505)
                      .++++||+|||++|+++|++|| .+|.+||+.++  |||+.|||+||+.+++..
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            4688999999999999999999 58999999965  999999999999998764

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.36  E-value=8.7e-13  Score=102.76  Aligned_cols=49  Identities=22%  Similarity=0.415  Sum_probs=45.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC-CCCHHHHHHHHHHHh
Q 046419           84 NLKKGTFSPEEERLIVELHAQLG-NKWARMAAQLP-GRTDNEIKNYWNTRV  132 (505)
Q Consensus        84 ~lkkg~WT~EED~lLlelV~kyG-~kWskIAk~Lp-gRT~~qcKnRW~~ll  132 (505)
                      .+.+++||+|||++|+++|++|| .+|.+||+.|+ +||+.||+.||..++
T Consensus         6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            45688999999999999999999 89999999999 999999999998764

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.32  E-value=6.5e-13  Score=109.96  Aligned_cols=52  Identities=23%  Similarity=0.404  Sum_probs=47.7

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccccccccc
Q 046419           28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL   81 (505)
Q Consensus        28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L   81 (505)
                      ......+++||+|||++|+++|++|| ++|.+||+.|+ +||.+||+.||.++.
T Consensus        12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~~   63 (79)
T 2yus_A           12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRLP   63 (79)
T ss_dssp             CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTSC
T ss_pred             ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence            45566789999999999999999999 59999999999 999999999999983

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.97  E-value=2e-13  Score=115.14  Aligned_cols=58  Identities=22%  Similarity=0.272  Sum_probs=53.9

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 046419           80 HLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHR  137 (505)
Q Consensus        80 ~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~r  137 (505)
                      .+.+.+++++||+|||++|+++|.+||.+|..||+.|+|||++||++||+.++++...
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l   66 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL   66 (89)
Confidence            4677889999999999999999999999999999999999999999999999887644

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.30  E-value=9.6e-13  Score=116.92  Aligned_cols=80  Identities=20%  Similarity=0.319  Sum_probs=68.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCCCCCCCchhhhhhhhcccc
Q 046419           82 RPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQHQHQHQNHQ  161 (505)
Q Consensus        82 ~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~~~e~q~~~~~~~~~qq~q  161 (505)
                      .+..+++.||+|||++|+++|++||.+|..||+.|+||+..||+.||..++...+.++.|+.+++.............+.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~   85 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA   85 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence            34678999999999999999999999999999999999999999999999999999998888877666555444444443

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.30  E-value=8.8e-13  Score=114.76  Aligned_cols=79  Identities=22%  Similarity=0.330  Sum_probs=65.8

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccC---Cccccccccccccccc-----CCCCCCCCCCHHHHHH-H
Q 046419           28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTG---LARCGKSCRLRWANHL-----RPNLKKGTFSPEEERL-I   98 (505)
Q Consensus        28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~---~gRT~kQCR~Rw~n~L-----~p~lkkg~WT~EED~l-L   98 (505)
                      .+..+++++||+|||++|+++|++||.++|.+|++.+.   .+||..+|++||++++     .|.++++.-+++|-.. +
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            35678999999999999999999999999999999762   3899999999999999     6888888777666555 7


Q ss_pred             HHHHHHhC
Q 046419           99 VELHAQLG  106 (505)
Q Consensus        99 lelV~kyG  106 (505)
                      ++|+..++
T Consensus        87 ~~~~~~~~   94 (105)
T 2aje_A           87 LNAHGYWT   94 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776654

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.28  E-value=1.2e-12  Score=109.38  Aligned_cols=69  Identities=23%  Similarity=0.434  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcchhccc----cCCccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 046419           35 GPWTAAEDAILTEYVRKHGEGNWNAVQRN----TGLARCGKSCRLRWANHL-----RPNLKKG-TFSPEEERLIVELHAQ  104 (505)
Q Consensus        35 G~WT~EEDelL~~lV~k~G~~nW~~IAk~----m~~gRT~kQCR~Rw~n~L-----~p~lkkg-~WT~EED~lLlelV~k  104 (505)
                      ++||+|||++|+++|++||.++|.+|++.    ++ +||..+|++||++++     .|..+++ +...+...+++.+++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999999999985    66 999999999999998     5654544 6888888889988865

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.27  E-value=1.5e-12  Score=111.72  Aligned_cols=73  Identities=19%  Similarity=0.417  Sum_probs=63.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCCCCCCCchhhhhhh
Q 046419           84 NLKKGTFSPEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQHQHQ  156 (505)
Q Consensus        84 ~lkkg~WT~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~~~e~q~~~~~~~~  156 (505)
                      .+++++||+|||++|+++|++||. +|..||+.|+||++.||+.||..++.+.++++.|+.+++......+...
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~   74 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL   74 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHh
Confidence            368999999999999999999996 6999999999999999999999999999888888877765554444333

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.27  E-value=1.1e-12  Score=107.16  Aligned_cols=56  Identities=23%  Similarity=0.328  Sum_probs=47.4

Q ss_pred             CCCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCC
Q 046419           27 EGGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLK   86 (505)
Q Consensus        27 ~~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lk   86 (505)
                      .-.+.++||+||+|||++|+++|++||. +|.+||+.|  +|++.||+.||.. |....+
T Consensus        16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           16 FQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             ---CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred             ecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence            3467899999999999999999999999 799999999  7999999999985 444433

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.25  E-value=1.3e-12  Score=106.69  Aligned_cols=57  Identities=14%  Similarity=0.344  Sum_probs=50.5

Q ss_pred             CCCCCCCCccCCCCHHHHHHHHHHHHHhCC---CCcchhccccCCcccccccccccccccC
Q 046419           25 GGEGGVQLKKGPWTAAEDAILTEYVRKHGE---GNWNAVQRNTGLARCGKSCRLRWANHLR   82 (505)
Q Consensus        25 ~~~~~~~lkKG~WT~EEDelL~~lV~k~G~---~nW~~IAk~m~~gRT~kQCR~Rw~n~L~   82 (505)
                      +..++....+++||+|||++|+++|++||.   .+|.+||+.|| |||.+||+.||..++.
T Consensus         9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A            9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            334566788999999999999999999993   48999999999 9999999999998764

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.23  E-value=9.4e-12  Score=101.69  Aligned_cols=51  Identities=12%  Similarity=0.294  Sum_probs=47.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419           84 NLKKGTFSPEEERLIVELHAQLG----NKWARMAAQLPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        84 ~lkkg~WT~EED~lLlelV~kyG----~kWskIAk~LpgRT~~qcKnRW~~llkk  134 (505)
                      ...+++||.|||++|+++|++||    .+|.+||+.|+|||..||++||+.+++.
T Consensus        15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            45788999999999999999999    5799999999999999999999988754

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.21  E-value=4.4e-12  Score=109.56  Aligned_cols=67  Identities=18%  Similarity=0.318  Sum_probs=59.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCCCCCCCchhhh
Q 046419           87 KGTFSPEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQHQH  153 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~~~e~q~~~~~  153 (505)
                      |+.||+|||++|+++|++||. +|..||..|+||++.||+.||..++.+.+.++.|+.+++......+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~   68 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKY   68 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHH
Confidence            579999999999999999996 7999999999999999999999999999988888877765554433

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.19  E-value=1.2e-11  Score=102.40  Aligned_cols=48  Identities=15%  Similarity=0.259  Sum_probs=44.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHH
Q 046419           84 NLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTR  131 (505)
Q Consensus        84 ~lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~l  131 (505)
                      ...+++||+|||++|+++|++||.+|.+||+.|++||+.||+.||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            346789999999999999999999999999999999999999999865

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.82  E-value=1.8e-12  Score=109.30  Aligned_cols=54  Identities=26%  Similarity=0.447  Sum_probs=50.4

Q ss_pred             CCCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCC
Q 046419           28 GGVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP   83 (505)
Q Consensus        28 ~~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p   83 (505)
                      ..+.+++|+||+|||++|+++|.+||. +|..||+.|+ +||..||+.||.++|..
T Consensus        10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            466889999999999999999999999 8999999999 99999999999998853

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.11  E-value=1e-10  Score=92.72  Aligned_cols=51  Identities=16%  Similarity=0.326  Sum_probs=46.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCHHHHH---hhCCCCCHHHHHHHHHHHhhhh
Q 046419           85 LKKGTFSPEEERLIVELHAQLGNKWARMA---AQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        85 lkkg~WT~EED~lLlelV~kyG~kWskIA---k~LpgRT~~qcKnRW~~llkk~  135 (505)
                      .++.+||+|||+.|+++|++||.+|..|+   ..+.+||..++|+||+.+.++.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            36789999999999999999999999999   5678999999999999998864

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.11  E-value=3e-11  Score=107.50  Aligned_cols=54  Identities=28%  Similarity=0.454  Sum_probs=49.4

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhh
Q 046419           81 LRPNLKKGTFSPEEERLIVELHAQLGN-KWARMAAQ----LPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        81 L~p~lkkg~WT~EED~lLlelV~kyG~-kWskIAk~----LpgRT~~qcKnRW~~llkk  134 (505)
                      +.+..++++||.|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+.+++.
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~   69 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   69 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            455678999999999999999999997 99999998    4899999999999999983

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.10  E-value=1.2e-10  Score=97.28  Aligned_cols=49  Identities=29%  Similarity=0.479  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhhh
Q 046419           88 GTFSPEEERLIVELHAQLGN-KWARMAAQ----LPGRTDNEIKNYWNTRVKRRH  136 (505)
Q Consensus        88 g~WT~EED~lLlelV~kyG~-kWskIAk~----LpgRT~~qcKnRW~~llkk~~  136 (505)
                      .+||+|||++|+++|++||. +|+.|++.    |+|||+.+||+||+++++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            47999999999999999997 89999996    899999999999999997543

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.09  E-value=9.8e-11  Score=101.88  Aligned_cols=53  Identities=25%  Similarity=0.397  Sum_probs=47.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhhh
Q 046419           83 PNLKKGTFSPEEERLIVELHAQLGN-KWARMAAQL----PGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        83 p~lkkg~WT~EED~lLlelV~kyG~-kWskIAk~L----pgRT~~qcKnRW~~llkk~  135 (505)
                      ...++++||.|||+.|+++|++||. +|+.|++.+    ++||+.+||+||+.+++..
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            3467889999999999999999996 899999975    8999999999999999743

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.06  E-value=9.8e-11  Score=104.36  Aligned_cols=51  Identities=27%  Similarity=0.473  Sum_probs=46.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC----CCCCHHHHHHHHHHHhhh
Q 046419           84 NLKKGTFSPEEERLIVELHAQLGN-KWARMAAQL----PGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        84 ~lkkg~WT~EED~lLlelV~kyG~-kWskIAk~L----pgRT~~qcKnRW~~llkk  134 (505)
                      ..++++||.|||+.|+++|++||. +|+.|++.+    .+||+.+||+||+++++.
T Consensus        28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~   83 (122)
T 2roh_A           28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT   83 (122)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            457889999999999999999996 899999974    899999999999999963

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.03  E-value=2.9e-10  Score=96.95  Aligned_cols=50  Identities=24%  Similarity=0.413  Sum_probs=45.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419           86 KKGTFSPEEERLIVELHAQLG----NKWARMAAQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        86 kkg~WT~EED~lLlelV~kyG----~kWskIAk~LpgRT~~qcKnRW~~llkk~  135 (505)
                      .+++||.|||++|++++.+||    .+|.+||+.|+|||.++|++||+.+++..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467899999999999999996    57999999999999999999999987764

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.00  E-value=1.9e-10  Score=112.46  Aligned_cols=54  Identities=19%  Similarity=0.441  Sum_probs=48.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCC------HHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 046419           84 NLKKGTFSPEEERLIVELHAQLGNK------WARMAAQLPGRTDNEIKNYWNTRVKRRHR  137 (505)
Q Consensus        84 ~lkkg~WT~EED~lLlelV~kyG~k------WskIAk~LpgRT~~qcKnRW~~llkk~~r  137 (505)
                      .++++.||+|||++|+++|++||++      |.+||+.|+|||+++||+||+.+|++++.
T Consensus         5 ~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            5 SHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ---CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            5678899999999999999999875      99999999999999999999999999865

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.87  E-value=2.6e-10  Score=97.16  Aligned_cols=48  Identities=17%  Similarity=0.378  Sum_probs=43.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC---CCcchhccccCCccccccccccccccc
Q 046419           33 KKGPWTAAEDAILTEYVRKHGE---GNWNAVQRNTGLARCGKSCRLRWANHL   81 (505)
Q Consensus        33 kKG~WT~EEDelL~~lV~k~G~---~nW~~IAk~m~~gRT~kQCR~Rw~n~L   81 (505)
                      .++.||+|||++|++++.+|+.   .+|.+||+.|| |||.+||+.||..++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            4678999999999999999973   47999999999 999999999999864

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=6.6e-09  Score=81.59  Aligned_cols=48  Identities=13%  Similarity=0.174  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 046419           86 KKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVK  133 (505)
Q Consensus        86 kkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llk  133 (505)
                      ...+||+||++++++++.+||.+|..||..|++||..+|+.+|....+
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            456899999999999999999999999999999999999999986654

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=2.4e-09  Score=84.12  Aligned_cols=51  Identities=18%  Similarity=0.273  Sum_probs=45.2

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccccccccc
Q 046419           29 GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL   81 (505)
Q Consensus        29 ~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L   81 (505)
                      ......++||+||+++|++++.+||. +|..||+.|+ +|+..||+++|....
T Consensus         7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred             cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence            34456789999999999999999998 9999999999 999999999986543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.70  E-value=1.8e-08  Score=82.09  Aligned_cols=50  Identities=12%  Similarity=0.280  Sum_probs=45.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419           84 NLKKGTFSPEEERLIVELHAQLG----NKWARMAAQLPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        84 ~lkkg~WT~EED~lLlelV~kyG----~kWskIAk~LpgRT~~qcKnRW~~llkk  134 (505)
                      ..+.+.||.||+++|++++.+|+    .+|.+||+.| |||..+|+.||+.+++.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34567899999999999999997    4699999998 99999999999988765

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.70  E-value=1.9e-08  Score=85.69  Aligned_cols=66  Identities=8%  Similarity=0.140  Sum_probs=59.2

Q ss_pred             ccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhC-----CCCCHHHHHHHHHHHhhhhhhcC
Q 046419           70 GKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQL-----PGRTDNEIKNYWNTRVKRRHRQG  139 (505)
Q Consensus        70 ~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~L-----pgRT~~qcKnRW~~llkk~~r~~  139 (505)
                      ..=+.++|.++|.+    .+||.||++.|++|+++||.+|..|+..+     ++||..++|+||..+.++.....
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            45678899999964    89999999999999999999999999999     58999999999999988877654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.67  E-value=1.3e-08  Score=108.43  Aligned_cols=47  Identities=17%  Similarity=0.378  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419           88 GTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        88 g~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk  134 (505)
                      ..||+||.+++++++.+||.+|..||+.+++||..|||++|....++
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999865554

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.64  E-value=6.7e-09  Score=82.29  Aligned_cols=48  Identities=17%  Similarity=0.264  Sum_probs=43.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhc---cccCCcccccccccccccccC
Q 046419           33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQ---RNTGLARCGKSCRLRWANHLR   82 (505)
Q Consensus        33 kKG~WT~EEDelL~~lV~k~G~~nW~~IA---k~m~~gRT~kQCR~Rw~n~L~   82 (505)
                      ++++||+|||+.|+++|++||. +|..|+   ..+. +||..++++||+++..
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            7889999999999999999999 999999   4555 9999999999998765

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.62  E-value=3.3e-08  Score=96.08  Aligned_cols=51  Identities=16%  Similarity=0.301  Sum_probs=46.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419           85 LKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        85 lkkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~  135 (505)
                      .....||+||++++++++.+||++|..||+.|++||..|||++|....++.
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl  181 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF  181 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            345689999999999999999999999999999999999999999877663

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.43  E-value=3.9e-08  Score=80.04  Aligned_cols=50  Identities=16%  Similarity=0.237  Sum_probs=43.6

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCC---CCcchhccccCCcccccccccccccccC
Q 046419           31 QLKKGPWTAAEDAILTEYVRKHGE---GNWNAVQRNTGLARCGKSCRLRWANHLR   82 (505)
Q Consensus        31 ~lkKG~WT~EEDelL~~lV~k~G~---~nW~~IAk~m~~gRT~kQCR~Rw~n~L~   82 (505)
                      ..+++.||.|||++|.+++.+|+.   .+|.+||+.|  +|+.++|+.||..+..
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            345788999999999999999984   4799999998  5999999999987654

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.38  E-value=5.3e-07  Score=73.68  Aligned_cols=50  Identities=16%  Similarity=0.258  Sum_probs=44.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419           86 KKGTFSPEEERLIVELHAQLGN----KWARMAAQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        86 kkg~WT~EED~lLlelV~kyG~----kWskIAk~LpgRT~~qcKnRW~~llkk~  135 (505)
                      ....||.||+++|.+++..|+.    +|.+||..++|||..+|+.||..+++.+
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~   60 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            3468999999999999999984    5999999999999999999999885543

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.33  E-value=1e-07  Score=77.86  Aligned_cols=49  Identities=20%  Similarity=0.405  Sum_probs=44.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CCcchhccccCCcccccccccccccccCC
Q 046419           34 KGPWTAAEDAILTEYVRKHGE---GNWNAVQRNTGLARCGKSCRLRWANHLRP   83 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G~---~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p   83 (505)
                      ...||.+|+++|.+++..|+.   ++|.+||..|| +|+..+|+.||..++.-
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence            357999999999999999976   57999999999 99999999999987643

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.28  E-value=2.2e-07  Score=90.33  Aligned_cols=51  Identities=22%  Similarity=0.371  Sum_probs=46.5

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccC
Q 046419           30 VQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLR   82 (505)
Q Consensus        30 ~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~   82 (505)
                      .....++||.||++++++++.+||. +|.+||+.|+ +||..||+.+|.++.+
T Consensus       129 ~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          129 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            3456789999999999999999998 9999999999 9999999999987764

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.16  E-value=3.8e-07  Score=71.47  Aligned_cols=48  Identities=27%  Similarity=0.546  Sum_probs=43.0

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCCcchhcc-ccCCcccccccccccccccC
Q 046419           34 KGPWTAAEDAILTEYVRKH--------GEGNWNAVQR-NTGLARCGKSCRLRWANHLR   82 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~--------G~~nW~~IAk-~m~~gRT~kQCR~Rw~n~L~   82 (505)
                      |.+||+|||++|+++|.+|        |..-|+++++ .++ .+|-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            5789999999999999999        4457999999 787 9999999999998874

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.14  E-value=2.1e-06  Score=67.23  Aligned_cols=47  Identities=17%  Similarity=0.368  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCC-HHHHHh-hCCCCCHHHHHHHHHHHhh
Q 046419           87 KGTFSPEEERLIVELHAQL--------GNK-WARMAA-QLPGRTDNEIKNYWNTRVK  133 (505)
Q Consensus        87 kg~WT~EED~lLlelV~ky--------G~k-WskIAk-~LpgRT~~qcKnRW~~llk  133 (505)
                      +.+||+|||+.|++.|.+|        |+. |.++|+ .++++|-.+||+||.+.|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            4689999999999999999        433 999999 8999999999999998764

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.96  E-value=1.8e-05  Score=62.51  Aligned_cols=51  Identities=18%  Similarity=0.296  Sum_probs=45.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHHHHhh
Q 046419           83 PNLKKGTFSPEEERLIVELHAQLGNKWARMAA-QLPGRTDNEIKNYWNTRVK  133 (505)
Q Consensus        83 p~lkkg~WT~EED~lLlelV~kyG~kWskIAk-~LpgRT~~qcKnRW~~llk  133 (505)
                      |.+....||+||.++.++++.+||.+|..|++ .|++|+..+|...|....+
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKk   56 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKK   56 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHHC
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcccC
Confidence            55677899999999999999999999999999 5999999999988864433

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.91  E-value=3e-05  Score=78.65  Aligned_cols=101  Identities=19%  Similarity=0.263  Sum_probs=80.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccc-------cccccc---------------------------
Q 046419           36 PWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRL-------RWANHL---------------------------   81 (505)
Q Consensus        36 ~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~-------Rw~n~L---------------------------   81 (505)
                      .||..|...++.++.+||..+|..||..|+ +++...++.       ||..+-                           
T Consensus       112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~  190 (304)
T 1ofc_X          112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD  190 (304)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999998 888666542       221110                           


Q ss_pred             ----------------CCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHh------------hCCCCCHHHHHHHHH
Q 046419           82 ----------------RPNLKKGTFSPEEERLIVELHAQLGN----KWARMAA------------QLPGRTDNEIKNYWN  129 (505)
Q Consensus        82 ----------------~p~lkkg~WT~EED~lLlelV~kyG~----kWskIAk------------~LpgRT~~qcKnRW~  129 (505)
                                      .+..++..||+|||..|+-++.+||-    .|.+|..            .+..||+.+|..|..
T Consensus       191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~  270 (304)
T 1ofc_X          191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  270 (304)
T ss_dssp             HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence                            01124457999999999999999995    4999973            346799999999999


Q ss_pred             HHhhhhhh
Q 046419          130 TRVKRRHR  137 (505)
Q Consensus       130 ~llkk~~r  137 (505)
                      .+++-..+
T Consensus       271 tLi~~iek  278 (304)
T 1ofc_X          271 TLITLIER  278 (304)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876543

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.90  E-value=1.4e-05  Score=67.66  Aligned_cols=49  Identities=18%  Similarity=0.371  Sum_probs=44.8

Q ss_pred             CCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 046419           89 TFSPEEERLIVELHAQLGN---KWARMAAQLPGRTDNEIKNYWNTRVKRRHR  137 (505)
Q Consensus        89 ~WT~EED~lLlelV~kyG~---kWskIAk~LpgRT~~qcKnRW~~llkk~~r  137 (505)
                      .||.|||..||...++-|.   .|+.||+.|.+|+.+||++||+.+++=...
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~   86 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence            5999999999999999986   699999999999999999999998876544

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.90  E-value=1.8e-06  Score=70.44  Aligned_cols=44  Identities=14%  Similarity=0.353  Sum_probs=39.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC---CcchhccccCCcccccccccccc
Q 046419           34 KGPWTAAEDAILTEYVRKHGEG---NWNAVQRNTGLARCGKSCRLRWA   78 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G~~---nW~~IAk~m~~gRT~kQCR~Rw~   78 (505)
                      .+.||.||+++|.+++.+|..+   +|.+||+.|| ||+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            4579999999999999999764   8999999999 999999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.78  E-value=1e-05  Score=63.89  Aligned_cols=49  Identities=14%  Similarity=0.125  Sum_probs=43.7

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCCCcchhcc-ccCCccccccccccccc
Q 046419           29 GVQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQR-NTGLARCGKSCRLRWAN   79 (505)
Q Consensus        29 ~~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk-~m~~gRT~kQCR~Rw~n   79 (505)
                      .+.++...||+||-+++.+++.+||. +|..|++ .|+ +|+..+|.+.|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            45677889999999999999999999 9999998 588 9999999887653

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.76  E-value=3.7e-06  Score=68.66  Aligned_cols=43  Identities=19%  Similarity=0.317  Sum_probs=38.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHH
Q 046419           87 KGTFSPEEERLIVELHAQLGN----KWARMAAQLPGRTDNEIKNYWN  129 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~----kWskIAk~LpgRT~~qcKnRW~  129 (505)
                      ...||.||+++|.+++.+|+.    +|.+||+.|+|||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            457999999999999999985    6999999999999999999884

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.85  E-value=5.8e-06  Score=66.47  Aligned_cols=46  Identities=20%  Similarity=0.354  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419           89 TFSPEEERLIVELHAQLGN---KWARMAAQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        89 ~WT~EED~lLlelV~kyG~---kWskIAk~LpgRT~~qcKnRW~~llkk~  135 (505)
                      .||.|||..|+...++-|.   .|+.||+.| +|+.+||++||+.+++=.
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf   64 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF   64 (70)
Confidence            4999999999999999997   699999999 999999999999887643

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.60  E-value=0.00015  Score=61.68  Aligned_cols=61  Identities=8%  Similarity=0.185  Sum_probs=52.1

Q ss_pred             ccccccCCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCC-----CCCHHHHHHHHHHHhhhhhhcCC
Q 046419           76 RWANHLRPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLP-----GRTDNEIKNYWNTRVKRRHRQGL  140 (505)
Q Consensus        76 Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~kWskIAk~Lp-----gRT~~qcKnRW~~llkk~~r~~~  140 (505)
                      .|..+|.    ...||.||...|++|+++|+-+|..|+..+.     .||-.++|.||..+.++..+...
T Consensus        23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~   88 (93)
T 4iej_A           23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            4555553    4689999999999999999999999999984     79999999999999988876543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.50  E-value=3.2e-05  Score=82.66  Aligned_cols=50  Identities=20%  Similarity=0.347  Sum_probs=44.9

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccccccccc
Q 046419           30 VQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL   81 (505)
Q Consensus        30 ~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L   81 (505)
                      ......+||.||.+++++++.+||. +|.+||+.|+ +|+..|||.+|.++-
T Consensus       376 ~~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          376 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            3456789999999999999999999 9999999999 999999999887543

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.45  E-value=0.00024  Score=57.25  Aligned_cols=44  Identities=20%  Similarity=0.317  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 046419           87 KGTFSPEEERLIVELHAQLGNKWARMAA-QLPGRTDNEIKNYWNT  130 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~kWskIAk-~LpgRT~~qcKnRW~~  130 (505)
                      ...||+||.+++.+++.+||.+|..|++ .|++|+..+|...|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4589999999999999999999999999 5999999999999873

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.42  E-value=0.00021  Score=60.76  Aligned_cols=46  Identities=20%  Similarity=0.181  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHh
Q 046419           87 KGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRV  132 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~ll  132 (505)
                      ...||+||.+++.+++.+||.+|.+||..|++||..+|-..|....
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K   88 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   88 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence            3579999999999999999999999999999999999999886543

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.15  E-value=0.00013  Score=58.82  Aligned_cols=44  Identities=18%  Similarity=0.279  Sum_probs=39.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhcc-ccCCcccccccccccc
Q 046419           33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQR-NTGLARCGKSCRLRWA   78 (505)
Q Consensus        33 kKG~WT~EEDelL~~lV~k~G~~nW~~IAk-~m~~gRT~kQCR~Rw~   78 (505)
                      ....||+||.+++.+++.+||. +|..|++ .|+ +|+..+|.+.|.
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY   51 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYY   51 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHH
Confidence            3467999999999999999999 9999999 588 999999988665

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.12  E-value=0.00011  Score=62.52  Aligned_cols=49  Identities=18%  Similarity=0.280  Sum_probs=43.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcchhccccC----Cccccccccccccccc
Q 046419           32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTG----LARCGKSCRLRWANHL   81 (505)
Q Consensus        32 lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~----~gRT~kQCR~Rw~n~L   81 (505)
                      ++-+.||.||++.|++++++|+. .|..|+..+.    .+|+..++++||..+.
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999999 9999999982    2799999999998754

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.09  E-value=0.00016  Score=61.53  Aligned_cols=43  Identities=16%  Similarity=0.313  Sum_probs=40.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccc
Q 046419           34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWA   78 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~   78 (505)
                      ...||+||.+++.+++..||+ +|..||+.|+ +|+..+|.+.|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHh
Confidence            478999999999999999999 9999999998 999999998765

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.00  E-value=6.3e-05  Score=62.23  Aligned_cols=50  Identities=22%  Similarity=0.497  Sum_probs=40.9

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCC---------CCcchhcccc---CCccccccccccccccc
Q 046419           32 LKKGPWTAAEDAILTEYVRKHGE---------GNWNAVQRNT---GLARCGKSCRLRWANHL   81 (505)
Q Consensus        32 lkKG~WT~EEDelL~~lV~k~G~---------~nW~~IAk~m---~~gRT~kQCR~Rw~n~L   81 (505)
                      .+...||.+|..+|++++..+..         ..|.+||..|   |..|++.||+.||.++.
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            35688999999999999876422         2699999986   45799999999998765

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.78  E-value=0.0017  Score=61.44  Aligned_cols=47  Identities=9%  Similarity=0.162  Sum_probs=37.7

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCHHHHHhhC--------------CCCCHHHHHHHHHHHhhhh
Q 046419           89 TFSPEEERLIVELHAQLG-NKWARMAAQL--------------PGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        89 ~WT~EED~lLlelV~kyG-~kWskIAk~L--------------pgRT~~qcKnRW~~llkk~  135 (505)
                      .||++||..|+..|.+|| +.|..|-...              ..++...+..|...+++-.
T Consensus       136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l  197 (211)
T 4b4c_A          136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL  197 (211)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence            599999999999999999 8899996632              1256778999987776644

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.77  E-value=0.0012  Score=54.48  Aligned_cols=50  Identities=14%  Similarity=0.421  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----------CHHHHHhhCC----CCCHHHHHHHHHHHhhhhh
Q 046419           87 KGTFSPEEERLIVELHAQLGN----------KWARMAAQLP----GRTDNEIKNYWNTRVKRRH  136 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~----------kWskIAk~Lp----gRT~~qcKnRW~~llkk~~  136 (505)
                      ...||.+|-.+||+++.++..          .|..||..|.    .||+.||+.+|..+.+.-.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk   67 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK   67 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            457999999999999976331          4999999973    6999999999998887643

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.68  E-value=0.0017  Score=55.01  Aligned_cols=47  Identities=15%  Similarity=0.348  Sum_probs=41.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC--CCcchhccccCCcccccccccccccc
Q 046419           33 KKGPWTAAEDAILTEYVRKHGE--GNWNAVQRNTGLARCGKSCRLRWANH   80 (505)
Q Consensus        33 kKG~WT~EEDelL~~lV~k~G~--~nW~~IAk~m~~gRT~kQCR~Rw~n~   80 (505)
                      +---||.|||..|+...++.|.  ..|..||+.++ +|+..|+++||+.+
T Consensus        32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            3457999999999999999976  48999999998 99999999999863

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.26  E-value=0.016  Score=60.26  Aligned_cols=103  Identities=20%  Similarity=0.252  Sum_probs=77.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccc-------ccccccC--------------------------
Q 046419           36 PWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRL-------RWANHLR--------------------------   82 (505)
Q Consensus        36 ~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~-------Rw~n~L~--------------------------   82 (505)
                      .|+.-|=..++.++.+||..+-..||..|+.+++...++.       ||..+-+                          
T Consensus       125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L~  204 (374)
T 2y9y_A          125 NWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEALR  204 (374)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999889999999954576554441       2211100                          


Q ss_pred             ------------------CC-CCCCCCCHHHHHHHHHHHHHhCC----CHHHHHhh------------CCCCCHHHHHHH
Q 046419           83 ------------------PN-LKKGTFSPEEERLIVELHAQLGN----KWARMAAQ------------LPGRTDNEIKNY  127 (505)
Q Consensus        83 ------------------p~-lkkg~WT~EED~lLlelV~kyG~----kWskIAk~------------LpgRT~~qcKnR  127 (505)
                                        +. .++..||+|||..||-++.+||-    .|.+|-..            |..||...|..|
T Consensus       205 ~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rR  284 (374)
T 2y9y_A          205 RKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARR  284 (374)
T ss_dssp             HHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHH
T ss_pred             HHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence                              00 13457999999999999999994    49999555            367999999999


Q ss_pred             HHHHhhhhhhc
Q 046419          128 WNTRVKRRHRQ  138 (505)
Q Consensus       128 W~~llkk~~r~  138 (505)
                      ...+++-..+.
T Consensus       285 c~tLi~~IeKE  295 (374)
T 2y9y_A          285 GNTLLQCLEKE  295 (374)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHH
Confidence            99999876554

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=94.91  E-value=0.0013  Score=53.00  Aligned_cols=46  Identities=13%  Similarity=0.268  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCcchhccccCCcccccccccccccccC
Q 046419           35 GPWTAAEDAILTEYVRKHGE--GNWNAVQRNTGLARCGKSCRLRWANHLR   82 (505)
Q Consensus        35 G~WT~EEDelL~~lV~k~G~--~nW~~IAk~m~~gRT~kQCR~Rw~n~L~   82 (505)
                      -.||.|||..|+..+++-|.  .-|..||+.+  +|++.|+.+||..++.
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            35999999999999999886  4799999988  6999999999998664

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=95.18  E-value=0.058  Score=42.88  Aligned_cols=50  Identities=8%  Similarity=0.018  Sum_probs=42.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---HHHHHhhC--CCCCHHHHHHHHHHHhhhh
Q 046419           86 KKGTFSPEEERLIVELHAQLGNK---WARMAAQL--PGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        86 kkg~WT~EED~lLlelV~kyG~k---WskIAk~L--pgRT~~qcKnRW~~llkk~  135 (505)
                      .+-.||+|..++++++|+++|..   |..|.+.|  +|.|..+|+.|.+++....
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l   60 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            45579999999999999999954   88998886  6889999999988766544

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=94.26  E-value=0.013  Score=49.76  Aligned_cols=49  Identities=18%  Similarity=0.280  Sum_probs=41.0

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcchhccccC----Cccccccccccccccc
Q 046419           32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTG----LARCGKSCRLRWANHL   81 (505)
Q Consensus        32 lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~----~gRT~kQCR~Rw~n~L   81 (505)
                      ++...||.||...|++++++|+. .|.-|+....    ..|+..+.++||..+.
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            44578999999999999999999 9999988763    2588888888887654

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=91.97  E-value=0.23  Score=50.39  Aligned_cols=47  Identities=15%  Similarity=0.303  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419           88 GTFSPEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        88 g~WT~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llkk  134 (505)
                      +.||..|...++.++.+||. .|..||..|.|+|..+|+.++.....+
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            46999999999999999996 699999999999999998777655544

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=89.81  E-value=0.37  Score=45.21  Aligned_cols=49  Identities=14%  Similarity=0.246  Sum_probs=40.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCHHHHHhh--CCCCCHHHHHHHHHHHhhh
Q 046419           86 KKGTFSPEEERLIVELHAQLG---NKWARMAAQ--LPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        86 kkg~WT~EED~lLlelV~kyG---~kWskIAk~--LpgRT~~qcKnRW~~llkk  134 (505)
                      ....||+.|-..|++++.+||   .+|..|++.  |.+|+...|+..+..++..
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999   479999875  7899999999877765544

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=89.12  E-value=0.16  Score=40.37  Aligned_cols=46  Identities=9%  Similarity=0.003  Sum_probs=34.9

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCC--CcchhccccCC-cccccccccc
Q 046419           31 QLKKGPWTAAEDAILTEYVRKHGEG--NWNAVQRNTGL-ARCGKSCRLR   76 (505)
Q Consensus        31 ~lkKG~WT~EEDelL~~lV~k~G~~--nW~~IAk~m~~-gRT~kQCR~R   76 (505)
                      +..+-.||+|+.++++++|.+.|..  -|+.|.+.|+. +.|..+++-|
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSH   52 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASH   52 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHH
Confidence            4567789999999999999999952  26789888762 4566666544

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=88.69  E-value=0.22  Score=49.66  Aligned_cols=26  Identities=38%  Similarity=0.632  Sum_probs=24.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhc
Q 046419           36 PWTAAEDAILTEYVRKHGEGNWNAVQ   61 (505)
Q Consensus        36 ~WT~EEDelL~~lV~k~G~~nW~~IA   61 (505)
                      .|+.+||..|+..|.+||.|+|..|.
T Consensus       170 ~W~~~dD~~LLvGIykyGyG~We~Ir  195 (270)
T 2xb0_X          170 NWTKEEDEKLLIGVFKYGYGSWTQIR  195 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcChHHHHHHHHHHHHHcCCcHHHHh
Confidence            49999999999999999999999994

>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2

Probab=81.54  E-value=5.5  Score=33.59  Aligned_cols=90  Identities=13%  Similarity=0.109  Sum_probs=54.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccc---ccccccc--CCCCCCCCCCHHHHHHHHHHHHHhCCCH
Q 046419           35 GPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCR---LRWANHL--RPNLKKGTFSPEEERLIVELHAQLGNKW  109 (505)
Q Consensus        35 G~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR---~Rw~n~L--~p~lkkg~WT~EED~lLlelV~kyG~kW  109 (505)
                      ...|.++-..++.++. -|. .-.+||+.+|  .+...++   .+|...-  .........+.+++..|+++...-.-.-
T Consensus         5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~   80 (141)
T 1u78_A            5 SALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA   80 (141)
T ss_dssp             CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCH
T ss_pred             ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCH
Confidence            4578888888877763 454 7889999987  3333332   2232211  1111223578888888888733322345


Q ss_pred             HHHHhhCCC--CCHHHHHHHHH
Q 046419          110 ARMAAQLPG--RTDNEIKNYWN  129 (505)
Q Consensus       110 skIAk~Lpg--RT~~qcKnRW~  129 (505)
                      .+|+..| |  -+...|....+
T Consensus        81 ~~i~~~l-g~~~s~~tV~r~l~  101 (141)
T 1u78_A           81 RDIRNEL-QLSASKRTILNVIK  101 (141)
T ss_dssp             HHHHHHT-TCCSCHHHHHHHHH
T ss_pred             HHHHHHH-CCCccHHHHHHHHH
Confidence            7899988 4  56666665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	505
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-19
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	5e-11
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-18
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-10
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	1e-17
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	0.002
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	3e-17
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-07
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	4e-17
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-10
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	6e-16
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-07
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	3e-15
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	3e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-13
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-09
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-13
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	5e-07
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-13
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-12
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	4e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-09
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	9e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	8e-05
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-08
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-07

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.4 bits (196), Expect = 2e-19
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83
          L KGPWT  ED  L + V+K+G   W+ + ++    R GK CR RW NHL P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (135), Expect = 5e-11
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 85  LKKGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNT 130
           L KG ++ EE++ +++L  + G  +W+ +A  L GR   + +  W+ 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (188), Expect = 2e-18
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRP 83
          K  WT  ED  L + V ++G  +W  +       R    C+ RW   L P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (129), Expect = 2e-10
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 87  KGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNT 130
           K  ++ EE+  + +L  Q G + W  +A  LP RTD + ++ W  
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 45

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 75.1 bits (184), Expect = 1e-17
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 36  PWTAAEDAILTEYVRKHGEGNWNAVQRN---TGLARCGKSCRLRWANHLR-----PNLKK 87
           P++ AE   L E V   G G W  V+         R     + +W   +      P  ++
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 88  GTFSPEEERL-IVELHAQLGNK 108
           G   P++    ++  HA    +
Sbjct: 62  GEPVPQDLLDRVLAAHAYWSQQ 83

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 5/66 (7%)

Query: 90  FSPEEERLIVELHAQLGNK-----WARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYP 144
           FS  E   +VE    LG         R       RT  ++K+ W T V            
Sbjct: 3   FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 145 PEIQPQ 150
             +   
Sbjct: 63  EPVPQD 68

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (180), Expect = 3e-17
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLA-RCGKSCRLRWANHLR 82
          K+  W   ED  L   VRK+GEGNW+ +  +     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 86  KKGTFSPEEERLIVELHAQLGNK-WARMAAQLP--GRTDNEIKNYWNTRVK 133
           K+  +  EE++ +     + G   W+++        RT   +K+ W T  K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.2 bits (182), Expect = 4e-17
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 34  KGPWTAAEDAILTEYVRKHGEG-----NWNAVQRNTGLARCGKSCRLRWANHLRPNLKKG 88
           K  +T  ED  + + VRK+         ++ +         G S R R+  +L   L+  
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 89  TFSPEEERLIVELHAQLGN 107
               +  +L+ +    L  
Sbjct: 60  YEVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 87  KGTFSPEEERLIVELHAQLGNK------WARMAAQLPGRTDNEIKNYWNTRVKRRHRQG 139
           K +F+ EE+  I+++  +   +      +  ++  +P  T N I++ +   + +R    
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV 59

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (170), Expect = 6e-16
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLA-RCGKSCRLRWANHLRPNL 85
          KK  WT  E   +   V+K+GEGNW A+ +N     R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 86  KKGTFSPEEERLIVELHAQLGNK-WARMAAQ--LPGRTDNEIKNYWNTRVKRR 135
           KK  ++ EE   +     + G   WA ++       RT   IK+ W T  +  
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 53

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.5 bits (165), Expect = 3e-15
 Identities = 24/47 (51%), Positives = 37/47 (78%)

Query: 87  KGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVK 133
           K +++ EE+R+I + H +LGN+WA +A  LPGRTDN IKN+WN+ ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.4 bits (136), Expect = 3e-11
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLR 82
          K  WT  ED I+ +  ++ G   W  + +     R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR 47

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 8/49 (16%), Positives = 24/49 (48%)

Query: 86  KKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKR 134
               ++ EE+ L V+   + G  +  ++  +  ++  ++KN++    +R
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 30 VQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL-RPNLKKG 88
          +Q     WT  E  +  + +RK+G  ++ A+    G  +     +  + N+  R N+ + 
Sbjct: 1  IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRRRFNIDEV 58

Query: 89 TFSPEEE 95
              E E
Sbjct: 59 LQEWEAE 65

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 2e-13
 Identities = 10/53 (18%), Positives = 19/53 (35%)

Query: 82  RPNLKKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKR 134
           +       +S +E+    E   Q    +  +A+ L  +T  E   Y+    K 
Sbjct: 12  KDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 5e-07
 Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 3/55 (5%)

Query: 33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLR-PNLK 86
              W+  E     E   +H + N+  +       +    C L +    +  N K
Sbjct: 16 VMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLTKKNENYK 68

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (152), Expect = 2e-13
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 90  FSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQ 148
           ++ EE+ L  +  A+ G +W +++  +  RT  ++K+Y     K + + GL    P  +
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQK 63

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (144), Expect = 3e-12
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPE 93
             WT  E  +  + + K G   W  + +  G +R     +     + +  +K G     
Sbjct: 2  SVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET 59

Query: 94 EER 96
            +
Sbjct: 60 PNQ 62

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 4e-10
 Identities = 8/50 (16%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 31 QLKKGPWTAAEDAILTEYVRKHGE---GNWNAVQRNTGLARCGKSCRLRW 77
          +  + PWT  +  +L   ++++       W+ + R    ++  + C  R+
Sbjct: 9  RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 2e-09
 Identities = 6/51 (11%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 82  RPNLKKGTFSPEEERLIVELHAQLG----NKWARMAAQLPGRTDNEIKNYW 128
           R    +  ++  +++L+     Q      + W ++A  +P ++  +    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 9e-10
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 37 WTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANH 80
          WTA E+  L E V   G GNW  V       +  + C   +  +
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 8e-05
 Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 90  FSPEEERLIVELHAQLGNK-WARMAAQLPGRTDNEIKNYWN 129
           ++ +EE  ++E     G   W  +A Q+  +T  E + ++ 
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 36 PWTAAEDAILTEYVRKHGEGNWNAVQRNTGLA--RCGKSCRLRWANHLRPNLKK 87
          PW+A E+      +  + +   +           R  +  +  +   L  ++K 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 90  FSPEEERLIVELHAQLG----NKWARMAAQLPGRTDNEIKNYWNTRVK 133
           +S +E +      A       ++WA +A  + GRT  E+K ++   V+
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE 51

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 10/64 (15%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 76  RWANHLRPNLKKGTFSPEEERLIVELHAQLGNK---WARMAAQLPGRTDNEIKNYWNTRV 132
             +       K   ++ E +R+I+ +  + G +   ++ ++ QL  +T  E+ + +   +
Sbjct: 22  NNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81

Query: 133 KRRH 136
           +  H
Sbjct: 82  QLFH 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	505
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.66
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.65
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.59
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.56
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.5
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.48
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.43
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.42
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.38
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.37
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.37
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.35
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.35
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.32
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.31
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.3
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.24
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.2
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.19
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.18
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.15
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.07
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.01
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.97
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.94
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.85
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.83
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.66
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.05
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.96
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.76
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.67
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.96
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.73
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.7
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.03
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.66
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.4
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.0
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	90.46
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	90.31
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	89.72

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=2.8e-19  Score=148.54  Aligned_cols=71  Identities=21%  Similarity=0.260  Sum_probs=65.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----CcchhccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHh
Q 046419           34 KGPWTAAEDAILTEYVRKHGEG-----NWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQL  105 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G~~-----nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~ky  105 (505)
                      |+.||+|||++|+++|++||..     +|.+||+.|+ +||++|||+||.++|+|.++++.||.|||++|+.++.++
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999874     4999999998 999999999999999999999999999999988665433

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.3e-17  Score=126.10  Aligned_cols=52  Identities=46%  Similarity=0.928  Sum_probs=49.8

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCC
Q 046419           32 LKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPN   84 (505)
Q Consensus        32 lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~   84 (505)
                      ++||+||+|||++|+++|++||.++|..||+.|+ +||+.||++||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999999 999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=9.6e-17  Score=120.10  Aligned_cols=50  Identities=30%  Similarity=0.680  Sum_probs=47.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCC
Q 046419           34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPN   84 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~   84 (505)
                      |++||+|||++|+++|.+||.++|.+||+.|+ +|+++||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999889999999998 999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2.1e-15  Score=111.58  Aligned_cols=47  Identities=51%  Similarity=0.988  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 046419           87 KGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVK  133 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llk  133 (505)
                      |++||+|||++|+++|++||.+|+.||+.|+|||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998875

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.1e-14  Score=109.82  Aligned_cols=50  Identities=26%  Similarity=0.671  Sum_probs=46.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419           85 LKKGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        85 lkkg~WT~EED~lLlelV~kyG-~kWskIAk~LpgRT~~qcKnRW~~llkk  134 (505)
                      +++|+||+|||++|+++|++|| .+|..||+.|++||+.||++||+.+|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4789999999999999999999 5799999999999999999999998764

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.48  E-value=2.7e-15  Score=123.11  Aligned_cols=74  Identities=22%  Similarity=0.462  Sum_probs=60.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcchhcccc---CCcccccccccccccccC-----CCCCCCCCCHHHHHHHHHHHHHhC
Q 046419           35 GPWTAAEDAILTEYVRKHGEGNWNAVQRNT---GLARCGKSCRLRWANHLR-----PNLKKGTFSPEEERLIVELHAQLG  106 (505)
Q Consensus        35 G~WT~EEDelL~~lV~k~G~~nW~~IAk~m---~~gRT~kQCR~Rw~n~L~-----p~lkkg~WT~EED~lLlelV~kyG  106 (505)
                      .+||+|||++|+++|++||.++|.+|++.+   ..+||+.||++||+++|.     +..+++.|+++|   |+..|.+++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            379999999999999999999999999863   238999999999999984     567788898776   555555556


Q ss_pred             CCHHH
Q 046419          107 NKWAR  111 (505)
Q Consensus       107 ~kWsk  111 (505)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.6e-15  Score=111.16  Aligned_cols=53  Identities=34%  Similarity=0.564  Sum_probs=48.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhccc--cCCcccccccccccccccCCCCC
Q 046419           33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRN--TGLARCGKSCRLRWANHLRPNLK   86 (505)
Q Consensus        33 kKG~WT~EEDelL~~lV~k~G~~nW~~IAk~--m~~gRT~kQCR~Rw~n~L~p~lk   86 (505)
                      ||++||+|||++|+++|++||.++|..||+.  ++ +|++.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~-~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFV-NRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCS-SCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCC-CcCHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999998899999987  44 89999999999999887653

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1e-13  Score=103.39  Aligned_cols=48  Identities=29%  Similarity=0.558  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419           87 KGTFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG-~kWskIAk~LpgRT~~qcKnRW~~llkk  134 (505)
                      |+.||+|||++|+++|.+|| .+|.+||+.|+|||+.||++||.++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 5799999999999999999999998864

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.5e-14  Score=106.87  Aligned_cols=49  Identities=33%  Similarity=0.493  Sum_probs=44.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhccccC-Cccccccccccccccc
Q 046419           33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTG-LARCGKSCRLRWANHL   81 (505)
Q Consensus        33 kKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~-~gRT~kQCR~Rw~n~L   81 (505)
                      ||++||+|||++|+++|++||.++|.+|++.++ .+|++.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            689999999999999999999999999998743 3899999999999865

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=4.3e-14  Score=104.43  Aligned_cols=47  Identities=23%  Similarity=0.583  Sum_probs=44.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccC
Q 046419           34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLR   82 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~   82 (505)
                      |++||+|||++|+++|++||. +|..||+.|+ +||+.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            689999999999999999999 9999999998 9999999999998763

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=1.5e-13  Score=113.67  Aligned_cols=64  Identities=16%  Similarity=0.292  Sum_probs=58.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC------HHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCCCCCCCch
Q 046419           87 KGTFSPEEERLIVELHAQLGNK------WARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLYPPEIQPQ  150 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~k------WskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~~~e~q~~  150 (505)
                      ++.||+|||++|+++|.+||.+      |.+||+.|+|||+.|||+||+.+|.+.+.++.++..++....
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~   70 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVR   70 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHH
Confidence            5789999999999999999964      999999999999999999999999999988887777766554

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.7e-14  Score=104.13  Aligned_cols=44  Identities=30%  Similarity=0.561  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccc
Q 046419           36 PWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANH   80 (505)
Q Consensus        36 ~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~   80 (505)
                      .||.|||++|+++|++||.++|.+||+.|+ +||++|||.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            499999999999999999989999999999 99999999999875

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7.6e-13  Score=102.99  Aligned_cols=57  Identities=23%  Similarity=0.384  Sum_probs=51.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhhhhhcCCCCC
Q 046419           87 KGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRHRQGLPLY  143 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk~~r~~~~~~  143 (505)
                      ...||+|||++|+++|.+||.+|..||+.|++||+.||++||+.++++..+.+....
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~   58 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKE   58 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            357999999999999999999999999999999999999999999998877665433

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.2e-12  Score=98.45  Aligned_cols=48  Identities=23%  Similarity=0.424  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC--CCCCHHHHHHHHHHHhh
Q 046419           86 KKGTFSPEEERLIVELHAQLGN-KWARMAAQL--PGRTDNEIKNYWNTRVK  133 (505)
Q Consensus        86 kkg~WT~EED~lLlelV~kyG~-kWskIAk~L--pgRT~~qcKnRW~~llk  133 (505)
                      ++++||+|||++|+++|++||. +|..||+.+  .+||+.||++||+.+.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            4789999999999999999995 899999985  49999999999998765

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.2e-12  Score=99.32  Aligned_cols=50  Identities=26%  Similarity=0.427  Sum_probs=45.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhh--CCCCCHHHHHHHHHHHhhhh
Q 046419           86 KKGTFSPEEERLIVELHAQLG-NKWARMAAQ--LPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        86 kkg~WT~EED~lLlelV~kyG-~kWskIAk~--LpgRT~~qcKnRW~~llkk~  135 (505)
                      ++.+||+|||++|+++|++|| .+|..||+.  |.+||+.||++||+.+++..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            467999999999999999999 579999998  56999999999999988764

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.3e-13  Score=103.33  Aligned_cols=53  Identities=17%  Similarity=0.440  Sum_probs=47.6

Q ss_pred             CCCCCCCccCCCCHHHHHHHHHHHHHhCCC---CcchhccccCCccccccccccccc
Q 046419           26 GEGGVQLKKGPWTAAEDAILTEYVRKHGEG---NWNAVQRNTGLARCGKSCRLRWAN   79 (505)
Q Consensus        26 ~~~~~~lkKG~WT~EEDelL~~lV~k~G~~---nW~~IAk~m~~gRT~kQCR~Rw~n   79 (505)
                      .......++++||+|||++|+++|.+||.+   +|.+||+.|| +|+++||+.||..
T Consensus         4 ~~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           4 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             ccccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            445667788999999999999999999986   5999999999 9999999999974

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.7e-12  Score=93.77  Aligned_cols=43  Identities=21%  Similarity=0.406  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHH
Q 046419           89 TFSPEEERLIVELHAQLG-NKWARMAAQLPGRTDNEIKNYWNTR  131 (505)
Q Consensus        89 ~WT~EED~lLlelV~kyG-~kWskIAk~LpgRT~~qcKnRW~~l  131 (505)
                      .||+|||++|+++|++|| .+|.+||+.|++||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999876

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.2e-13  Score=104.45  Aligned_cols=58  Identities=17%  Similarity=0.311  Sum_probs=51.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccCCCCCCCCCCHH
Q 046419           34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGTFSPE   93 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~E   93 (505)
                      .++||+|||++|+++|.+||. +|..||+.|+ +||..||+.||.+++.+..+.+.+...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhcc-hHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            367999999999999999997 9999999999 999999999999998776666655443

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.5e-11  Score=94.50  Aligned_cols=49  Identities=10%  Similarity=0.278  Sum_probs=44.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHH
Q 046419           83 PNLKKGTFSPEEERLIVELHAQLGN----KWARMAAQLPGRTDNEIKNYWNTR  131 (505)
Q Consensus        83 p~lkkg~WT~EED~lLlelV~kyG~----kWskIAk~LpgRT~~qcKnRW~~l  131 (505)
                      +...+.+||+|||++|+++|.+||.    +|.+||+.|+|||..||+.||+.+
T Consensus         8 ~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           8 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            4556789999999999999999995    499999999999999999999864

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=2.5e-11  Score=101.53  Aligned_cols=74  Identities=14%  Similarity=0.177  Sum_probs=65.5

Q ss_pred             ccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCC---HHHHHhhCCCCCHHHHHHHHHHHhhhhhh
Q 046419           63 NTGLARCGKSCRLRWANHLRPNLKKGTFSPEEERLIVELHAQLGNK---WARMAAQLPGRTDNEIKNYWNTRVKRRHR  137 (505)
Q Consensus        63 ~m~~gRT~kQCR~Rw~n~L~p~lkkg~WT~EED~lLlelV~kyG~k---WskIAk~LpgRT~~qcKnRW~~llkk~~r  137 (505)
                      .++ ..+..+++.++.+..........||.|||++||+.++++|.+   |..||+.|+||+++|||+||+.+++-...
T Consensus        10 ~~p-~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~   86 (95)
T d1ug2a_          10 ALP-KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             CCC-CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCC-CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            444 677788888888888877788899999999999999999977   99999999999999999999998887644

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.15  E-value=2.8e-11  Score=93.89  Aligned_cols=48  Identities=25%  Similarity=0.427  Sum_probs=43.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419           88 GTFSPEEERLIVELHAQLGN----KWARMAAQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        88 g~WT~EED~lLlelV~kyG~----kWskIAk~LpgRT~~qcKnRW~~llkk~  135 (505)
                      .+||.|||++|+++|++||.    +|.+||..|+|||..||++||+.+++..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~di   53 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   53 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            47999999999999999996    4999999999999999999998776643

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.07  E-value=9.9e-12  Score=96.47  Aligned_cols=44  Identities=18%  Similarity=0.422  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---cchhccccCCccccccccccccc
Q 046419           35 GPWTAAEDAILTEYVRKHGEGN---WNAVQRNTGLARCGKSCRLRWAN   79 (505)
Q Consensus        35 G~WT~EEDelL~~lV~k~G~~n---W~~IAk~m~~gRT~kQCR~Rw~n   79 (505)
                      .+||+|||++|+++|++||.+.   |.+||+.|+ +||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            4799999999999999999864   999999999 9999999999964

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.01  E-value=2.3e-10  Score=93.28  Aligned_cols=49  Identities=29%  Similarity=0.470  Sum_probs=44.5

Q ss_pred             CCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHHhhhhhh
Q 046419           89 TFSPEEERLIVELHAQLGN-KWARMAAQ----LPGRTDNEIKNYWNTRVKRRHR  137 (505)
Q Consensus        89 ~WT~EED~lLlelV~kyG~-kWskIAk~----LpgRT~~qcKnRW~~llkk~~r  137 (505)
                      +||.|||++|+++|++||. +|+.|++.    +++||+.||++||+++++....
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~   55 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI   55 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhcc
Confidence            7999999999999999995 89999986    6899999999999999976543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.7e-10  Score=88.47  Aligned_cols=48  Identities=17%  Similarity=0.376  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419           87 KGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llkk  134 (505)
                      ...||+||+++|++++.+||.+|..||+.|+|||..+|+++|..+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            457999999999999999999999999999999999999999987654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.6e-10  Score=89.39  Aligned_cols=48  Identities=21%  Similarity=0.184  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHHhh
Q 046419           86 KKGTFSPEEERLIVELHAQLGNKWARMAAQLPGRTDNEIKNYWNTRVK  133 (505)
Q Consensus        86 kkg~WT~EED~lLlelV~kyG~kWskIAk~LpgRT~~qcKnRW~~llk  133 (505)
                      ...+||+||+++|++++.+||.+|..||+.|+|||..||+++|....+
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~kk   63 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK   63 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHHC
Confidence            446799999999999999999999999999999999999999986544

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.2e-10  Score=88.06  Aligned_cols=48  Identities=21%  Similarity=0.368  Sum_probs=44.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCcccccccccccccccC
Q 046419           33 KKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHLR   82 (505)
Q Consensus        33 kKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~   82 (505)
                      ...+||+|||++|+++|.+||. +|.+||+.|+ +|+..||+.||.++.+
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            3467999999999999999998 9999999999 9999999999988653

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.3e-10  Score=88.85  Aligned_cols=50  Identities=14%  Similarity=0.203  Sum_probs=44.7

Q ss_pred             CCCccCCCCHHHHHHHHHHHHHhCCCCcchhccccCCccccccccccccccc
Q 046419           30 VQLKKGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL   81 (505)
Q Consensus        30 ~~lkKG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~~gRT~kQCR~Rw~n~L   81 (505)
                      ...+..+||+|||++|+++|.+||. +|..||+.|+ +|+..||+.||....
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3445578999999999999999998 9999999999 999999999997643

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=5.9e-09  Score=86.94  Aligned_cols=52  Identities=13%  Similarity=0.313  Sum_probs=45.3

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHHhCCC--CcchhccccCCccccccccccccccc
Q 046419           29 GVQLKKGPWTAAEDAILTEYVRKHGEG--NWNAVQRNTGLARCGKSCRLRWANHL   81 (505)
Q Consensus        29 ~~~lkKG~WT~EEDelL~~lV~k~G~~--nW~~IAk~m~~gRT~kQCR~Rw~n~L   81 (505)
                      ..+.+...||.|||++|++.++++|..  -|..||+.|+ +|++.|||.||..++
T Consensus        28 s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             CCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            445567889999999999999999973  2999999998 999999999997643

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.2e-06  Score=65.50  Aligned_cols=46  Identities=13%  Similarity=0.324  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHHhhh
Q 046419           88 GTFSPEEERLIVELHAQLGN----KWARMAAQLPGRTDNEIKNYWNTRVKR  134 (505)
Q Consensus        88 g~WT~EED~lLlelV~kyG~----kWskIAk~LpgRT~~qcKnRW~~llkk  134 (505)
                      ..||.||+.+|.+++.+|..    +|.+||..| ||+..+|..||+.+...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~   51 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   51 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHh
Confidence            47999999999999999973    599999999 99999999999876543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=7e-06  Score=61.87  Aligned_cols=44  Identities=20%  Similarity=0.342  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHhh-CCCCCHHHHHHHHHHH
Q 046419           88 GTFSPEEERLIVELHAQLGNKWARMAAQ-LPGRTDNEIKNYWNTR  131 (505)
Q Consensus        88 g~WT~EED~lLlelV~kyG~kWskIAk~-LpgRT~~qcKnRW~~l  131 (505)
                      ..||+||..++++++.+||.+|..|++. +++||..+|.+.|...
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3699999999999999999999999985 6999999999998743

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2e-06  Score=65.64  Aligned_cols=45  Identities=20%  Similarity=0.336  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---CcchhccccCCccccccccccccccc
Q 046419           35 GPWTAAEDAILTEYVRKHGEG---NWNAVQRNTGLARCGKSCRLRWANHL   81 (505)
Q Consensus        35 G~WT~EEDelL~~lV~k~G~~---nW~~IAk~m~~gRT~kQCR~Rw~n~L   81 (505)
                      +.||.||+++|.+++.+|..+   .|.+||+.||  |+.++|..||..+-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            579999999999999999753   7999999994  99999999997543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=6e-06  Score=62.26  Aligned_cols=42  Identities=19%  Similarity=0.343  Sum_probs=38.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhccc-cCCccccccccccccc
Q 046419           36 PWTAAEDAILTEYVRKHGEGNWNAVQRN-TGLARCGKSCRLRWAN   79 (505)
Q Consensus        36 ~WT~EEDelL~~lV~k~G~~nW~~IAk~-m~~gRT~kQCR~Rw~n   79 (505)
                      .||+||.+++.+++..||. +|..|++. ++ +|+..||.+.|..
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~-~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            6999999999999999999 99999986 56 9999999997764

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.96  E-value=0.00086  Score=51.52  Aligned_cols=49  Identities=8%  Similarity=0.039  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCH---HHHHhh--CCCCCHHHHHHHHHHHhhhh
Q 046419           87 KGTFSPEEERLIVELHAQLGNKW---ARMAAQ--LPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~kW---skIAk~--LpgRT~~qcKnRW~~llkk~  135 (505)
                      +-.||+||.++++++++++|.+|   ..|.+.  ++|+|..+|+.|.+++.-+.
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l   60 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            45799999999999999999887   467666  58899999999988775544

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.001  Score=50.24  Aligned_cols=47  Identities=13%  Similarity=0.309  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-------C--HHHHHh-hCCCCCHHHHHHHHHHHhh
Q 046419           87 KGTFSPEEERLIVELHAQLGN-------K--WARMAA-QLPGRTDNEIKNYWNTRVK  133 (505)
Q Consensus        87 kg~WT~EED~lLlelV~kyG~-------k--WskIAk-~LpgRT~~qcKnRW~~llk  133 (505)
                      +.+||.|||+.|++.|+++..       +  |.++++ .++.+|-...|+||.+.|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            358999999999999999742       1  999995 6899999999999988765

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.0023  Score=45.64  Aligned_cols=45  Identities=18%  Similarity=0.405  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHhhC---CCCCHHHHHHHHHHHh
Q 046419           88 GTFSPEEERLIVELHAQLGNKWARMAAQL---PGRTDNEIKNYWNTRV  132 (505)
Q Consensus        88 g~WT~EED~lLlelV~kyG~kWskIAk~L---pgRT~~qcKnRW~~ll  132 (505)
                      ..||+||-.-|.+.|+++|..|..|-=.+   +||+..++..+|+.++
T Consensus         2 knft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            46999999999999999999999996655   7999999999998763

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0008  Score=50.92  Aligned_cols=48  Identities=25%  Similarity=0.500  Sum_probs=39.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC--------CCcchhcc-ccCCcccccccccccccccC
Q 046419           34 KGPWTAAEDAILTEYVRKHGE--------GNWNAVQR-NTGLARCGKSCRLRWANHLR   82 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G~--------~nW~~IAk-~m~~gRT~kQCR~Rw~n~L~   82 (505)
                      |-+||.|||++|++.|.++..        .=|.++++ .++ .++-.+-|+||...|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            468999999999999999843        23999985 565 8889999999988774

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.66  E-value=0.0022  Score=49.13  Aligned_cols=48  Identities=8%  Similarity=-0.016  Sum_probs=36.4

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCc--chhccccC-Ccccccccccccc
Q 046419           31 QLKKGPWTAAEDAILTEYVRKHGEGNW--NAVQRNTG-LARCGKSCRLRWA   78 (505)
Q Consensus        31 ~lkKG~WT~EEDelL~~lV~k~G~~nW--~~IAk~m~-~gRT~kQCR~Rw~   78 (505)
                      +..|-.||+||.++++++|..+|...|  ..|.+.|+ .++|..||+-|.+
T Consensus         4 kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQ   54 (64)
T d1irza_           4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ   54 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHH
Confidence            445678999999999999999998444  47777653 1678888876543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.017  Score=44.73  Aligned_cols=50  Identities=16%  Similarity=0.284  Sum_probs=43.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC----HHHHHhhCCCCCHHHHHHHHHHHhhhh
Q 046419           86 KKGTFSPEEERLIVELHAQLGNK----WARMAAQLPGRTDNEIKNYWNTRVKRR  135 (505)
Q Consensus        86 kkg~WT~EED~lLlelV~kyG~k----WskIAk~LpgRT~~qcKnRW~~llkk~  135 (505)
                      ..+.|+++|-++|-.++..+...    |..||..+..|+..+|..+|..-.+.+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccc
Confidence            35689999999999999998853    999999999999999999998765543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0042  Score=48.19  Aligned_cols=49  Identities=20%  Similarity=0.393  Sum_probs=42.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhC---CCCcchhccccCCcccccccccccccccCC
Q 046419           34 KGPWTAAEDAILTEYVRKHG---EGNWNAVQRNTGLARCGKSCRLRWANHLRP   83 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G---~~nW~~IAk~m~~gRT~kQCR~Rw~n~L~p   83 (505)
                      -+.|.++|-++|-.++.-..   .+-|.+||..+| +|++..|..+|...+.-
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            46799999999999998764   468999999999 99999999999887654

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.46  E-value=0.33  Score=35.31  Aligned_cols=45  Identities=13%  Similarity=0.290  Sum_probs=38.9

Q ss_pred             CCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHHhh
Q 046419           89 TFSPEEERLIVELHAQLGN-KWARMAAQLPGRTDNEIKNYWNTRVK  133 (505)
Q Consensus        89 ~WT~EED~lLlelV~kyG~-kWskIAk~LpgRT~~qcKnRW~~llk  133 (505)
                      .|+..|=..++++.++||. +-..||..|.|+|..+|+...+..-+
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~   46 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE   46 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            4999999999999999995 69999999999999999876554433

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.31  E-value=0.043  Score=38.96  Aligned_cols=45  Identities=18%  Similarity=0.273  Sum_probs=35.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhccccC--Cccccccccccccc
Q 046419           34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTG--LARCGKSCRLRWAN   79 (505)
Q Consensus        34 KG~WT~EEDelL~~lV~k~G~~nW~~IAk~m~--~gRT~kQCR~Rw~n   79 (505)
                      |..||.||-.-|...|+++|. .|+.|-=.+|  .||+..+...+|+.
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            456999999999999999999 9999965443  37877776666654

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.72  E-value=0.46  Score=40.40  Aligned_cols=67  Identities=24%  Similarity=0.328  Sum_probs=49.4

Q ss_pred             cccccccccccC--CCCCCCCCCHHHHHHHHHHHHHhC-CC---HHHHHhhC------------CCCCHHHHHHHHHHHh
Q 046419           71 KSCRLRWANHLR--PNLKKGTFSPEEERLIVELHAQLG-NK---WARMAAQL------------PGRTDNEIKNYWNTRV  132 (505)
Q Consensus        71 kQCR~Rw~n~L~--p~lkkg~WT~EED~lLlelV~kyG-~k---WskIAk~L------------pgRT~~qcKnRW~~ll  132 (505)
                      .+|+.-|..+--  +..++..+|+|||.-|+-++.+|| ..   |.+|-..+            ..||+..+..|...++
T Consensus        31 ~~y~~P~~eL~i~y~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi  110 (128)
T d1ofcx2          31 SRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI  110 (128)
T ss_dssp             HTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred             HHhcChHHHhhhhccccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHH
Confidence            445444444322  234555799999999999999999 34   99885443            6799999999999988


Q ss_pred             hhhhh
Q 046419          133 KRRHR  137 (505)
Q Consensus       133 kk~~r  137 (505)
                      +-..+
T Consensus       111 ~~i~k  115 (128)
T d1ofcx2         111 TLIER  115 (128)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654