Citrus Sinensis ID: 046424

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------
Protein Sequence
MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccHHHHHHHccccccccccHHHHHHHHHHHHcccccEEEccccccccccEEccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHcccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHccccEEEEcccHHHHHHcccccccEEEccccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHcccHHHHHHHHHcccHHHHHHHHHHHccHHHHHHccccccEcHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEcHHHccccccEccEccHHHHHHHccHHHHHHHccHHHHHHHcccHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHcccccccEEEEEcHHHHccccccccEEEEEcccccccccccEEEcc
Coil and Loop (DISEMBL)
MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAkasptqlssseiasqlptnnkkapIILDRMLRLLASYSFLTCNlvsnkdgsvqrlygltpvskyfvpnkdgvslaptLLIIQDQVNMDSWSCAKDAllegsvpfmkahngmdgfaaAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSkypqlrginfdlphvlkhapscpgvehvggdmfvevpkgqaifmk
Flexible Loop (DISEMBL)
mgslqddhQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASptqlssseiasqlptnnkKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK
Low Complexity Region (SEG)
MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK
Disordered region (IsUnstruct)
*******************DFLLAMELASGAVLPMTIKSATELGLLEIM***********************APIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVP********
Disordered Region (DISOPRED)
********************FLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVS***GSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK
Disordered Region (DISEMBL)
MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAK*********EIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK
Disordered Region (DISPRO)
*****************EQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	266	2.2.26 [Sep-21-2011]
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.992	0.723	0.595	5e-85
Q43046	365	Caffeic acid 3-O-methyltr	N/A	no	0.992	0.723	0.595	9e-85
P46484	366	Caffeic acid 3-O-methyltr	N/A	no	0.996	0.724	0.584	6e-84
Q43609	365	Caffeic acid 3-O-methyltr	N/A	no	0.992	0.723	0.595	4e-83
Q8LL87	350	Caffeic acid 3-O-methyltr	N/A	no	0.936	0.711	0.605	5e-83
P28002	365	Caffeic acid 3-O-methyltr	N/A	no	0.992	0.723	0.584	5e-83
Q8W013	363	Caffeic acid 3-O-methyltr	N/A	no	0.992	0.727	0.580	1e-82
O23760	370	Caffeic acid 3-O-methyltr	N/A	no	0.992	0.713	0.569	6e-82
Q9FK25	363	Flavone 3'-O-methyltransf	yes	no	0.958	0.702	0.597	7e-82
Q9SWC2	313	Caffeic acid 3-O-methyltr	N/A	no	0.917	0.779	0.593	3e-81

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score =  314 bits (804), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 195/267 (73%), Gaps = 3/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQ-LSS 59
           MGS   + Q+      DE+  L AM+LAS +VLPM +K+A EL LLEIMAKA P   LS+
Sbjct: 1   MGS-TGETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLST 59

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           SEIAS LPT N  AP++LDR+LRLLASYS LTC+L    DG V+RLYGL PV K+   N+
Sbjct: 60  SEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNE 119

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS++P  L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN+
Sbjct: 120 DGVSVSPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNK 178

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE YKGFEGL  LVDV GG GA + +IVSKYP ++GINFDLPHV++ 
Sbjct: 179 GMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIED 238

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           APS PGVEHVGGDMFV VPK  A+FMK
Sbjct: 239 APSYPGVEHVGGDMFVSVPKADAVFMK 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.
Populus tremuloides (taxid: 3693)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8

>sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1

 Score =  313 bits (802), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 194/267 (72%), Gaps = 3/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQ-LSS 59
           MGS   + Q+      DE+  L AM+LAS +VLPM +K+A EL LLEIMAKA P   LS+
Sbjct: 1   MGS-TGETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLST 59

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           SEIAS LPT N  AP++LDR+LRLLASYS LTC+L    DG V+RLYGL PV K+   N+
Sbjct: 60  SEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNE 119

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS++P  L+ QD+V M+SW   KDA+LEG +PF KA+ GM  F     D R N +FN+
Sbjct: 120 DGVSVSPLCLMNQDKVLMESWYYLKDAILEGGIPFNKAY-GMTAFEYHGTDPRFNKVFNK 178

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE YKGFEGL  LVDV GG GA + +IVSKYP ++GINFDLPHV++ 
Sbjct: 179 GMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIED 238

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           APS PGVEHVGGDMFV VP   A+FMK
Sbjct: 239 APSYPGVEHVGGDMFVSVPNADAVFMK 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|P46484|COMT1_EUCGU Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1

 Score =  310 bits (794), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 156/267 (58%), Positives = 193/267 (72%), Gaps = 2/267 (0%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQ-LSS 59
           MGS   + Q+      DE+  L AM+LAS +VLPM +K+A EL LLEIMAKA P   LS 
Sbjct: 1   MGSTGSETQMTPTQVSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSP 60

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
            E+A+QLPT N +AP++LDR+ RLLASYS LTC L +  DG V+RLYGL PV K+ V N+
Sbjct: 61  GEVAAQLPTQNPEAPVMLDRIFRLLASYSVLTCTLRNLPDGKVERLYGLAPVCKFLVKNE 120

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS+A   L+ QD++ M+SW   KDA+LEG +PF KA+ GM  F     D R N +FN+
Sbjct: 121 DGVSIAALNLMNQDKILMESWYYLKDAVLEGGIPFNKAY-GMTAFEYHGTDPRFNKIFNR 179

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE YKGFEGL  +VDV GG GA L  IV+KYP ++GINFDLPHV++ 
Sbjct: 180 GMSDHSTITMKKILETYKGFEGLETVVDVGGGTGAVLSMIVAKYPSMKGINFDLPHVIED 239

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           AP  PGV+HVGGDMFV VPKG AIFMK
Sbjct: 240 APPLPGVKHVGGDMFVSVPKGDAIFMK 266

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Eucalyptus gunnii (taxid: 3933)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1

 Score =  308 bits (788), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 194/267 (72%), Gaps = 3/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP-TQLSS 59
           MGS   + Q+      DE+  L AM+LAS +VLPM +K+A EL LLEIMAKA P   LS 
Sbjct: 1   MGS-TGETQMTPTQVSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGVFLSP 59

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           ++IASQLPT N  AP++LDRMLRLLASYS LT +L +  DG V+RLYGL PV K+   N+
Sbjct: 60  TDIASQLPTKNPDAPVMLDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFLTKNE 119

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           +GVS+AP  L+ QD+V ++SW   KDA+LEG +PF KA+ GM  F     D R N +FN+
Sbjct: 120 EGVSIAPLCLMNQDKVLLESWYHLKDAVLEGGIPFNKAY-GMTAFEYHGTDPRFNKVFNR 178

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE YKGFEGL  +VDV GG GA L  IVSKYP ++GINFDLPHV++ 
Sbjct: 179 GMADHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIED 238

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           AP  PGVEHVGGDMFV VPKG AIFMK
Sbjct: 239 APQYPGVEHVGGDMFVSVPKGDAIFMK 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Prunus dulcis (taxid: 3755)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1

 Score =  307 bits (786), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 152/251 (60%), Positives = 189/251 (75%), Gaps = 2/251 (0%)

Query: 17  DEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP-TQLSSSEIASQLPTNNKKAPI 75
           +E+  L AM LAS +VLPM +KSA EL LLE++AKA P   +S SE+A+QLPT+N +API
Sbjct: 3   EEEACLFAMSLASASVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPI 62

Query: 76  ILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQV 135
           +LDR+LRLLA+YS L C L +  DG V+RLYGL PV K+   N DGVS+AP LL+ QD+V
Sbjct: 63  MLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKV 122

Query: 136 NMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEI 195
            M+SW   KDA+L+G +PF KA+ GM  F     D R N +FNQ M NH+TI MK+ILE+
Sbjct: 123 LMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEV 181

Query: 196 YKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFV 255
           Y+GFEGL  +VDV GG GA L  I+SKYP ++GINF+LPHV++ APS  GVEHVGGDMFV
Sbjct: 182 YRGFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFV 241

Query: 256 EVPKGQAIFMK 266
            VPKG AIFMK
Sbjct: 242 SVPKGDAIFMK 252

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1

 Score =  307 bits (786), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 156/267 (58%), Positives = 194/267 (72%), Gaps = 3/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP-TQLSS 59
           MGS   + Q+      DE+  L AM+LAS +VLPM +KSA EL LLEI+AKA P  Q+S 
Sbjct: 1   MGS-TGETQITPTHISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISP 59

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
            EIASQLPT N  AP++LDRMLRLLA Y  LTC++ + +DG VQRLYGL  V+KY V N+
Sbjct: 60  IEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 119

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS++   L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN+
Sbjct: 120 DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNK 178

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE Y GFEGL  LVDV GG GA + +IVSKYP ++GINFDLPHV++ 
Sbjct: 179 GMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED 238

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           APS PGVEHVGGDMFV +PK  A+FMK
Sbjct: 239 APSYPGVEHVGGDMFVSIPKADAVFMK 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1

 Score =  306 bits (783), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 155/267 (58%), Positives = 194/267 (72%), Gaps = 3/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP-TQLSS 59
           MGS   D++  +    +E+  L AM LAS +VLPM +KSA EL LLE++ K+ P   +S 
Sbjct: 1   MGSANPDNKNSMT-KEEEEACLSAMRLASASVLPMVLKSAIELDLLELIKKSGPGAYVSP 59

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           SE+A+QLPT N  AP++LDR+LRLLASYS L C L    DG ++RLY L PV K+   N+
Sbjct: 60  SELAAQLPTQNPDAPVMLDRILRLLASYSVLNCTLKDLPDGGIERLYSLAPVCKFLTKNE 119

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS+A  LL+ QD+V M+SW   KDA+LEG +PF KA+ GM  F    KD R N +FNQ
Sbjct: 120 DGVSMAALLLMNQDKVLMESWYHLKDAVLEGGIPFNKAY-GMTAFEYHGKDPRFNKVFNQ 178

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M NH+TI+MK+ILEIY+GF+GL  +VDV GG GA L  IVSKYP ++GINFDLPHV++ 
Sbjct: 179 GMSNHSTIIMKKILEIYQGFQGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIED 238

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           APS PGV+HVGGDMFV VPKG AIFMK
Sbjct: 239 APSYPGVDHVGGDMFVSVPKGDAIFMK 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|O23760|COMT1_CLABR Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1

 Score =  304 bits (778), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 155/272 (56%), Positives = 194/272 (71%), Gaps = 8/272 (2%)

Query: 1   MGSLQDDHQVMLKPAR--DEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP---- 54
           MGS   + +  L P    DE+  L AM+LAS +VLPM +K+A EL +LEIMAK+ P    
Sbjct: 1   MGS-TGNAETQLTPTHVSDEEANLFAMQLASASVLPMVLKAAIELDVLEIMAKSIPHGSG 59

Query: 55  TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKY 114
             +S +EIA+QLPT N  AP++LDR+LRLLASYS +TC+L    DG V+RLYGL PV K+
Sbjct: 60  AYISPAEIAAQLPTTNPDAPVMLDRVLRLLASYSVVTCSLRELPDGKVERLYGLAPVCKF 119

Query: 115 FVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERIN 174
              N+DGVSLAP  L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N
Sbjct: 120 LTKNEDGVSLAPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAY-GMTAFEYHGTDPRFN 178

Query: 175 NLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP 234
            +FN+ M +H+TI MK+I E+Y GFE LN +VDV GG GA L  IV+KYP ++GINFDLP
Sbjct: 179 KVFNRGMSDHSTITMKKIFEMYTGFEALNTIVDVGGGTGAVLSMIVAKYPSIKGINFDLP 238

Query: 235 HVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
           HV++ AP  PGVEHVGGDMFV VPKG AIFMK
Sbjct: 239 HVIEDAPIYPGVEHVGGDMFVSVPKGDAIFMK 270

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Clarkia breweri (taxid: 36903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9FK25|OMT1_ARATH Flavone 3'-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1

 Score =  303 bits (777), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 156/261 (59%), Positives = 190/261 (72%), Gaps = 6/261 (2%)

Query: 9   QVMLKPAR--DEQDFLLAMELASGAVLPMTIKSATELGLLEIMAK-ASPTQLSSSEIASQ 65
           +  L P +  D++  L AM+LAS +VLPM +KSA EL LLEIMAK  SP  +S +EIAS+
Sbjct: 6   ETQLTPVQVTDDEAALFAMQLASASVLPMALKSALELDLLEIMAKNGSP--MSPTEIASK 63

Query: 66  LPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLA 125
           LPT N +AP++LDR+LRLL SYS LTC+        V+R+YGL PV KY   N+DGVS+A
Sbjct: 64  LPTKNPEAPVMLDRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNEDGVSIA 123

Query: 126 PTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHT 185
              L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN  M NH+
Sbjct: 124 ALCLMNQDKVLMESWYHLKDAILDGGIPFNKAY-GMSAFEYHGTDPRFNKVFNNGMSNHS 182

Query: 186 TIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPG 245
           TI MK+ILE YKGFEGL  LVDV GG+GA LK IVSKYP L+GINFDLPHV++ APS PG
Sbjct: 183 TITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPG 242

Query: 246 VEHVGGDMFVEVPKGQAIFMK 266
           +EHVGGDMFV VPKG AIFMK
Sbjct: 243 IEHVGGDMFVSVPKGDAIFMK 263

Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > myricetin >> luteolin. Dihydroquercetin is not a substrate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 6

>sp|Q9SWC2|COMT1_EUCGL Caffeic acid 3-O-methyltransferase (Fragment) OS=Eucalyptus globulus GN=COMT1 PE=3 SV=1

 Score =  301 bits (771), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 146/246 (59%), Positives = 182/246 (73%), Gaps = 2/246 (0%)

Query: 22  LLAMELASGAVLPMTIKSATELGLLEIMAKASP-TQLSSSEIASQLPTNNKKAPIILDRM 80
           L AM+LA+ +VLP  + +A EL LLEIMA+A P   L+  E+ASQLPT N  AP++LDR+
Sbjct: 3   LFAMQLATASVLPAVLTAAIELDLLEIMARAGPGAYLTPGEVASQLPTQNPDAPVMLDRI 62

Query: 81  LRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSW 140
            RLLASYS LTC L    +G V+RLYGL P+ K+ V N+DGVSLAP  LI QD+V ++SW
Sbjct: 63  FRLLASYSVLTCTLCDLPEGKVERLYGLAPLCKFLVKNEDGVSLAPLRLIDQDRVFLESW 122

Query: 141 SCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFE 200
              KDA+LEG +PF KAH GM  F     D R N +FN++M +H+TI+MK+ILE Y GFE
Sbjct: 123 YYMKDAILEGGIPFHKAH-GMTAFDYPGTDPRFNKIFNRAMSDHSTIMMKKILETYNGFE 181

Query: 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKG 260
           GL  +VDV GG GA L  IV+KYP ++GINFDLPHV++ APS PGVEHVGGDMFV +P G
Sbjct: 182 GLKTVVDVGGGTGAILNMIVAKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVNIPNG 241

Query: 261 QAIFMK 266
            A+FMK
Sbjct: 242 DAVFMK 247

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Eucalyptus globulus (taxid: 34317)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
7332271	364	O-methyltransferase [Populus trichocarpa	0.992	0.725	0.595	9e-84
156145680	364	caffeic acid O-3-methyltransferase [Popu	0.992	0.725	0.595	1e-83
7528266	360	caffeic acid O-3-methyltransferase [Popu	0.992	0.733	0.599	1e-83
239586194	365	putative caffeic acid O-methyltransferas	0.992	0.723	0.617	2e-83
231757	365	RecName: Full=Caffeic acid 3-O-methyltra	0.992	0.723	0.595	3e-83
4808530	362	O-methyltransferase [Thalictrum tuberosu	0.988	0.726	0.584	3e-83
429326470	365	caffeic acid O-methyltransferase [Populu	0.992	0.723	0.595	3e-83
444327	364	O-methyltransferase	0.992	0.725	0.591	4e-83
255569707	365	o-methyltransferase, putative [Ricinus c	0.992	0.723	0.602	5e-83
4808524	362	catechol O-methyltransferase [Thalictrum	0.988	0.726	0.580	5e-83

>gi|7332271|gb|AAF60951.1| O-methyltransferase [Populus trichocarpa x Populus deltoides]

 Score =  315 bits (808), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 196/267 (73%), Gaps = 3/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQ-LSS 59
           MGS   + Q+      DE+  L AM+LAS +VLPM +K+A EL LLEIMAKA P   LS+
Sbjct: 1   MGS-TGETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLST 59

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           SEIAS LPT N  AP++LDR+LRLLASYS LTC+L  + DG V+RLYGL PV K+   N+
Sbjct: 60  SEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDHPDGKVERLYGLAPVCKFLTKNE 119

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS++P  L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN+
Sbjct: 120 DGVSVSPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNK 178

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE YKGFEGL  LVDV GG GA + +IVSKYP ++GINFDLPHV++ 
Sbjct: 179 GMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIED 238

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           APS PGVEHVGGDMFV VPK  A+FMK
Sbjct: 239 APSYPGVEHVGGDMFVSVPKADAVFMK 265

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156145680|gb|ABU53653.1| caffeic acid O-3-methyltransferase [Populus deltoides]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 196/267 (73%), Gaps = 3/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQ-LSS 59
           MGS   + Q+      DE+  L AM+LAS +VLPM +K+A EL LLEIMAKA P   LS+
Sbjct: 1   MGS-TGETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLST 59

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           SEIAS LPT N  AP++LDR+LRLLASYS LTC+L  + DG V+RLYGL PV K+   N+
Sbjct: 60  SEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDHPDGKVERLYGLAPVCKFLTKNE 119

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS++P  L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN+
Sbjct: 120 DGVSVSPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNK 178

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE YKGFEGL  LVDV GG GA + +IVSKYP ++GINFDLPHV++ 
Sbjct: 179 GMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIED 238

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           APS PGVEHVGGDMFV VPK  A+FMK
Sbjct: 239 APSYPGVEHVGGDMFVSVPKADAVFMK 265

Source: Populus deltoides

Species: Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7528266|gb|AAF63200.1| caffeic acid O-3-methyltransferase [Populus tomentosa]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 160/267 (59%), Positives = 195/267 (73%), Gaps = 3/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQ-LSS 59
           MGS   + Q+      DE+  L AM+LAS +VLPM +K+A EL LLEIMAKA P   LS+
Sbjct: 1   MGS-TGETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLST 59

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           SEIAS LPT N  AP++LDR+LRLLASYS LTC+L    DG V+RLYGL PV K+   N+
Sbjct: 60  SEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNE 119

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS++P  L+ QD+V M+SW   KDA+LEG +PF KA+ GM  F     D R N +FN+
Sbjct: 120 DGVSVSPLCLMNQDKVLMESWYYLKDAILEGGIPFNKAY-GMTAFEYHGTDPRFNKVFNK 178

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE YKGFEGL  LVDV GG GA + +IVSKYP ++GINFDLPHV++ 
Sbjct: 179 GMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIED 238

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           APS PGVEHVGGDMFV VPK  A+FMK
Sbjct: 239 APSYPGVEHVGGDMFVSVPKADAVFMK 265

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239586194|gb|ACN41351.2| putative caffeic acid O-methyltransferase [Betula pendula]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 165/267 (61%), Positives = 195/267 (73%), Gaps = 3/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP-TQLSS 59
           MGS  +  Q+      DE+  L AM+LAS +VLPM +KSA EL LLEIMAKA P   LS 
Sbjct: 1   MGSTAET-QMTPTQVSDEEANLFAMQLASASVLPMILKSAIELDLLEIMAKAGPGAYLSP 59

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           SEIASQLPT N  AP++LDR+LRLLASYS LT +L +  DG V+RLYGL PV K+   N+
Sbjct: 60  SEIASQLPTTNPDAPVMLDRILRLLASYSVLTYSLRTLPDGRVERLYGLGPVCKFLTKNE 119

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS+A   L+ QD+V M+SW   KDA+LEG +PF KAH GM  F    KD R N +FN+
Sbjct: 120 DGVSIAALNLMNQDKVLMESWYYLKDAVLEGGIPFNKAH-GMTSFEYHGKDLRFNKVFNK 178

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE YKGFEGL  +VDV GG GA L  IVSKYP +RGINFDLPHV++ 
Sbjct: 179 GMSDHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLSMIVSKYPSIRGINFDLPHVIED 238

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           APS PGV+HVGGDMFV VPKG AIFMK
Sbjct: 239 APSYPGVDHVGGDMFVSVPKGDAIFMK 265

Source: Betula pendula

Species: Betula pendula

Genus: Betula

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|231757|sp|Q00763.1|COMT1_POPTM RecName: Full=Caffeic acid 3-O-methyltransferase 1; Short=CAOMT-1; Short=COMT-1; AltName: Full=S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase 1 gi|20951|emb|CAA44006.1| lignin bispecific acid/5-hydroxyferulic acid methyltransferase [Populus tremuloides] gi|2226267|gb|AAB61731.1| caffeic acid/5-hydroxyferulic acid O-methyltransferase [Populus tremuloides]

 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 195/267 (73%), Gaps = 3/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQ-LSS 59
           MGS   + Q+      DE+  L AM+LAS +VLPM +K+A EL LLEIMAKA P   LS+
Sbjct: 1   MGS-TGETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLST 59

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           SEIAS LPT N  AP++LDR+LRLLASYS LTC+L    DG V+RLYGL PV K+   N+
Sbjct: 60  SEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNE 119

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS++P  L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN+
Sbjct: 120 DGVSVSPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNK 178

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE YKGFEGL  LVDV GG GA + +IVSKYP ++GINFDLPHV++ 
Sbjct: 179 GMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIED 238

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           APS PGVEHVGGDMFV VPK  A+FMK
Sbjct: 239 APSYPGVEHVGGDMFVSVPKADAVFMK 265

Source: Populus tremuloides

Species: Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4808530|gb|AAD29845.1|AF064697_1 O-methyltransferase [Thalictrum tuberosum]

 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 156/267 (58%), Positives = 202/267 (75%), Gaps = 4/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP-TQLSS 59
           MGS Q++H   L P  +E+  L AM+LAS +VLPM +K+A EL +LEI+AKA     ++ 
Sbjct: 1   MGSTQNNHN--LTPEEEEEACLHAMQLASASVLPMVLKAAIELDVLEIIAKAGQGAYVAP 58

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           SEIASQL T+N +APIILDR+LRLLASY  LTCNL + +DG V+RLYGL PV K+ V N+
Sbjct: 59  SEIASQLSTSNSQAPIILDRILRLLASYKVLTCNLRTLEDGGVERLYGLAPVCKFLVKNE 118

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS+AP +L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN+
Sbjct: 119 DGVSMAPLVLMNQDKVLMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNR 177

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK++LE+YKGFEGL  +VDV GG GA +  IV+K+P ++GINFDLPHV++ 
Sbjct: 178 GMSDHSTITMKKLLELYKGFEGLKSVVDVGGGTGATVNMIVTKHPTIKGINFDLPHVIED 237

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           AP+ PGVEH+GGDMFV VPKG AIFMK
Sbjct: 238 APAYPGVEHIGGDMFVCVPKGDAIFMK 264

Source: Thalictrum tuberosum

Species: Thalictrum tuberosum

Genus: Thalictrum

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326470|gb|AFZ78575.1| caffeic acid O-methyltransferase [Populus tomentosa]

 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 195/267 (73%), Gaps = 3/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQ-LSS 59
           MGS   + Q+      DE+  L AM+LAS +VLPM +K+A EL LLEIMAKA P   LS+
Sbjct: 1   MGS-TGETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLST 59

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           SEIAS LPT N  AP++LDR+LRLLASYS LTC+L    DG V+RLYGL PV K+   N+
Sbjct: 60  SEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNE 119

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS++P  L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN+
Sbjct: 120 DGVSVSPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNK 178

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE YKGFEGL  LVDV GG GA + +IVSKYP ++GINFDLPHV++ 
Sbjct: 179 GMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIED 238

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           APS PGVEHVGGDMFV VPK  A+FMK
Sbjct: 239 APSFPGVEHVGGDMFVSVPKADAVFMK 265

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444327|prf||1906376A O-methyltransferase

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 158/267 (59%), Positives = 195/267 (73%), Gaps = 3/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQ-LSS 59
           MGS   + Q+      DE+  L AM+LAS +VLPM +K+A EL LLEIMAKA P   LS+
Sbjct: 1   MGS-TGETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLST 59

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           SEIAS LPT N  AP++LDR+LRLLASYS L C+L  + DG V+RLYGL PV K+   N+
Sbjct: 60  SEIASHLPTKNPDAPVMLDRILRLLASYSILICSLKDHPDGKVERLYGLAPVCKFLTKNE 119

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS++P  L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN+
Sbjct: 120 DGVSVSPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNK 178

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE YKGFEGL  LVDV GG GA + +IVSKYP ++GINFDLPHV++ 
Sbjct: 179 GMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIED 238

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           APS PGVEHVGGDMFV VPK  A+FMK
Sbjct: 239 APSYPGVEHVGGDMFVSVPKADAVFMK 265

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569707|ref|XP_002525818.1| o-methyltransferase, putative [Ricinus communis] gi|223534882|gb|EEF36570.1| o-methyltransferase, putative [Ricinus communis]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 161/267 (60%), Positives = 195/267 (73%), Gaps = 3/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQ-LSS 59
           MGS   + Q+      DE+  L AM+LAS +VLPM +KSA EL LLEIMAKA P+  LS 
Sbjct: 1   MGS-TGETQMTPTQVSDEEANLFAMQLASASVLPMVLKSAIELDLLEIMAKAGPSAFLSP 59

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           SEIASQLPT N  AP++LDR+LRLLASY+ LTC+L +  DG V+RLYGL PV K+ + N+
Sbjct: 60  SEIASQLPTKNPDAPVMLDRILRLLASYNVLTCSLRTLPDGKVERLYGLAPVCKFLIKNE 119

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS+AP  L+ QD+V M+SW   KDA+L G +PF KA+ GM  F     D R N +FN+
Sbjct: 120 DGVSIAPLCLMNQDKVLMESWYYLKDAVLLGGIPFNKAY-GMTAFDYHGTDPRFNKVFNR 178

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE YKGFEGL  +VDV GG GA L  IVSKYP ++G NFDLPHV++ 
Sbjct: 179 GMSDHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLSMIVSKYPSIKGTNFDLPHVIED 238

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           APS PGVEHVGGDMF  VPKG AIFMK
Sbjct: 239 APSFPGVEHVGGDMFASVPKGDAIFMK 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4808524|gb|AAD29842.1|AF064694_1 catechol O-methyltransferase [Thalictrum tuberosum]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 155/267 (58%), Positives = 200/267 (74%), Gaps = 4/267 (1%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP-TQLSS 59
           MGS Q +H   L P  +E+  L AM+LAS +VLPM +K+A EL +LEI+AKA     ++ 
Sbjct: 1   MGSTQKNHN--LTPEEEEEACLHAMQLASASVLPMVLKAAIELSVLEIIAKAGQGAYVAP 58

Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           +EIASQL T+N +APIILDR+LRLLASY  LTCNL + +DG V+RLYGL PV K+ V N+
Sbjct: 59  TEIASQLSTSNSQAPIILDRILRLLASYKVLTCNLRTLEDGGVERLYGLAPVCKFLVKNE 118

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS+AP +L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN+
Sbjct: 119 DGVSIAPLVLMNQDKVLMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNR 177

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK++LE+YKGFEGL  +VDV GG GA +  IV+K+P ++GINFDLPHV+  
Sbjct: 178 GMADHSTITMKKLLELYKGFEGLKSVVDVGGGTGATINMIVTKHPTIKGINFDLPHVIDD 237

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           AP+ PGVEH+GGDMFV VPKG AIFMK
Sbjct: 238 APAYPGVEHIGGDMFVSVPKGDAIFMK 264

Source: Thalictrum tuberosum

Species: Thalictrum tuberosum

Genus: Thalictrum

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	266
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.981	0.719	0.600	2.4e-76
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.981	0.725	0.490	4.1e-65
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.981	0.709	0.465	6.2e-62
TAIR|locus:2034016	363	AT1G51990 [Arabidopsis thalian	0.939	0.688	0.464	1.6e-56
TAIR|locus:2204695	381	AT1G77530 [Arabidopsis thalian	0.984	0.687	0.451	3.3e-56
TAIR|locus:2204680	381	AT1G77520 [Arabidopsis thalian	0.984	0.687	0.440	7.8e-55
TAIR|locus:2199597	373	IGMT3 "indole glucosinolate O-	0.924	0.659	0.478	4.3e-54
TAIR|locus:2199582	373	IGMT4 "indole glucosinolate O-	0.924	0.659	0.474	4.3e-54
TAIR|locus:2199587	373	IGMT2 "indole glucosinolate O-	0.924	0.659	0.478	5.5e-54
TAIR|locus:2199607	373	IGMT1 "indole glucosinolate O-	0.924	0.659	0.463	5.6e-52

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 161/268 (60%), Positives = 195/268 (72%)

Query:     1 MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAK-ASPTQLSS 59
             MGS  +  Q+      D++  L AM+LAS +VLPM +KSA EL LLEIMAK  SP  +S 
Sbjct:     1 MGSTAET-QLTPVQVTDDEAALFAMQLASASVLPMALKSALELDLLEIMAKNGSP--MSP 57

Query:    60 SEIASQLPTNNKKAPIILDRMLRLLASYSFLTC-NLVSNKDGSVQRLYGLTPVSKYFVPN 118
             +EIAS+LPT N +AP++LDR+LRLL SYS LTC N   + DG V+R+YGL PV KY   N
Sbjct:    58 TEIASKLPTKNPEAPVMLDRILRLLTSYSVLTCSNRKLSGDG-VERIYGLGPVCKYLTKN 116

Query:   119 KDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFN 178
             +DGVS+A   L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN
Sbjct:   117 EDGVSIAALCLMNQDKVLMESWYHLKDAILDGGIPFNKAY-GMSAFEYHGTDPRFNKVFN 175

Query:   179 QSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLK 238
               M NH+TI MK+ILE YKGFEGL  LVDV GG+GA LK IVSKYP L+GINFDLPHV++
Sbjct:   176 NGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIE 235

Query:   239 HAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
              APS PG+EHVGGDMFV VPKG AIFMK
Sbjct:   236 DAPSHPGIEHVGGDMFVSVPKGDAIFMK 263

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 131/267 (49%), Positives = 180/267 (67%)

Query:     1 MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSS 60
             MGS   D    +  + DE+  + A++L S ++LPMT+K+A ELGLLE +  A    L+ +
Sbjct:     1 MGSTAAD----MAASADEEACMYALQLVSSSILPMTLKNAIELGLLETLVAAGGKLLTPA 56

Query:    61 EIASQLP-TNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
             E+A++LP T N  A  ++DRMLRLLASY+ ++C +   KDG + R Y   PV K+  PN+
Sbjct:    57 EVAAKLPSTANPAAADMVDRMLRLLASYNVVSCTMEEGKDGRLSRRYRAAPVCKFLTPNE 116

Query:   120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
             DGVS+A   L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN+
Sbjct:   117 DGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAY-GMSAFEYHGTDPRFNRVFNE 175

Query:   180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
              M NH+ I+ K++LE+YKGFEGL  +VDV GG+GA + +I + YP ++GINFDLPHV+  
Sbjct:   176 GMKNHSIIITKKLLEVYKGFEGLGTIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISE 235

Query:   240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
             A   PGV HVGGDMF +VP G AI MK
Sbjct:   236 AQPFPGVTHVGGDMFQKVPSGDAILMK 262

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 128/275 (46%), Positives = 181/275 (65%)

Query:     1 MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKAS------- 53
             MGS   D    +  A DE+  + A++LAS ++LPMT+K+A ELGLLE +  A+       
Sbjct:     1 MGSTAAD----MAAAADEEACMYALQLASSSILPMTLKNAIELGLLETLQSAAVAGGGGK 56

Query:    54 PTQLSSSEIASQLPTN-NKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS 112
                L+ +E+A +LP+  N  A  ++DRMLRLLASY+ + C +    DG + R Y   PV 
Sbjct:    57 AALLTPAEVADKLPSKANPAAADMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVC 116

Query:   113 KYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDER 172
             K+  PN+DGVS+A   L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R
Sbjct:   117 KWLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAY-GMTAFEYHGTDAR 175

Query:   173 INNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFD 232
              N +FN+ M NH+ I+ K++L++Y GF+  + +VDV GG+GA + ++VS++P +RGIN+D
Sbjct:   176 FNRVFNEGMKNHSVIITKKLLDLYTGFDAASTVVDVGGGVGATVAAVVSRHPHIRGINYD 235

Query:   233 LPHVLKHAPSCPGVEHVGGDMFVEVPKG-QAIFMK 266
             LPHV+  AP  PGVEHVGGDMF  VP+G  AI MK
Sbjct:   236 LPHVISEAPPFPGVEHVGGDMFASVPRGGDAILMK 270

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 117/252 (46%), Positives = 162/252 (64%)

Query:    17 DEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP--TQLSSSEIASQLPTNNKKAP 74
             +E+D LLA++L     +P  +K+A EL L EIMAKA P  + LS  ++AS     N  AP
Sbjct:    12 EEEDMLLAIQLGGLNFVPYIVKTARELDLFEIMAKARPLGSYLSPVDLASMAAPKNPHAP 71

Query:    75 IILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQ 134
             +++DR+LR L +YS  TC LV +++G   R YGL  V K  + ++DG S+AP +L    +
Sbjct:    72 MMIDRLLRFLVAYSVCTCKLVKDEEGRESRAYGLGKVGKKLIKDEDGFSIAPYVLAGCTK 131

Query:   135 VNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILE 194
                  WS   +A+ EG     +  N    F    K+E +  +FN+SM NHT+IVMK+ILE
Sbjct:   132 AKGGVWSYLTEAIQEGGASAWERANEALIFEYMKKNENLKKIFNESMTNHTSIVMKKILE 191

Query:   195 IYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMF 254
              Y GFEG++  VDV G LG+NL  I+SKYP ++GINFDLPH++K AP   GVEH+GGDMF
Sbjct:   192 NYIGFEGVSDFVDVGGSLGSNLAQILSKYPHIKGINFDLPHIVKEAPQIHGVEHIGGDMF 251

Query:   255 VEVPKGQAIFMK 266
              E+P+G+ I MK
Sbjct:   252 DEIPRGEVILMK 263

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 126/279 (45%), Positives = 178/279 (63%)

Query:     4 LQDDHQVMLKPA--RDEQDF------LLAMELASGAVLPMTIKSATELGLLEIMAKASP- 54
             LQD      KP   ++EQ+       L A  + +    PM +K+A ELG+++ +A AS  
Sbjct:     5 LQDPLTTYPKPGLTKEEQEIDEKMVSLQAESIVNAVAFPMVLKAALELGVIDTIAAASNG 64

Query:    55 TQLSSSEIASQLPTN--NKKAPIILDRMLRLLASYSFLTCNLVSNKD----GSVQRLYGL 108
             T LS SEIA  LP    N +AP++LDRMLRLL S+S L C +V +++    G ++R+Y  
Sbjct:    65 TWLSPSEIAVSLPNKPTNPEAPVLLDRMLRLLVSHSILKCCMVESRENGQTGKIERVYAA 124

Query:   109 TPVSKYFVPNKDGV-SLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAA 167
              P+ KYF+ + DG  SL+  LL++  QV + +W+  KD +LEG   F  AH+ M  F   
Sbjct:   125 EPICKYFLKDSDGSGSLSSLLLLLHSQVILKTWTNLKDVILEGKDAFSSAHD-MRLFEYI 183

Query:   168 AKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLR 227
             + D++ + LF+++M   +T+VMK++LE Y+GFE +N LVDV GG+G  L  I SKYP ++
Sbjct:   184 SSDDQFSKLFHRAMSESSTMVMKKVLEEYRGFEDVNTLVDVGGGIGTILGLITSKYPHIK 243

Query:   228 GINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
             G+NFDL  VL  AP  PGV+HV GDMF+EVPKG AIFMK
Sbjct:   244 GVNFDLAQVLTQAPFYPGVKHVSGDMFIEVPKGDAIFMK 282

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 123/279 (44%), Positives = 171/279 (61%)

Query:     4 LQDDHQVMLKPA--RDEQDF------LLAMELASGAVLPMTIKSATELGLLEIMAKA-SP 54
             LQD      KP   ++EQ+       L A  + +    PM +K+A ELG+++ +A A + 
Sbjct:     5 LQDPLPTYPKPVLTKEEQEVDEKMVSLQAESIVNTVAFPMVLKAAFELGVIDTIAAAGND 64

Query:    55 TQLSSSEIASQLPTN--NKKAPIILDRMLRLLASYSFLTCNLV----SNKDGSVQRLYGL 108
             T LS  EIA  LPT   N +AP++LDRML LL S+S L C ++    + + G ++R+Y  
Sbjct:    65 TWLSPCEIACSLPTKPTNPEAPVLLDRMLSLLVSHSILKCRMIETGENGRTGKIERVYAA 124

Query:   109 TPVSKYFVPNKDGV-SLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAA 167
              PV KYF+ + DG  SL P  +++  QV   +W+  KD +LEG   F  AH GM  F   
Sbjct:   125 EPVCKYFLRDSDGTGSLVPLFMLLHTQVFFKTWTNLKDVILEGRDAFNSAH-GMKIFEYI 183

Query:   168 AKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLR 227
               D+    LFN++M   +T++MK++L++Y+GFE +N LVDV GG G  L  + SKYP ++
Sbjct:   184 NSDQPFAELFNRAMSEPSTMIMKKVLDVYRGFEDVNTLVDVGGGNGTVLGLVTSKYPHIK 243

Query:   228 GINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
             G+NFDL  VL  AP  PGVEHV GDMFVEVPKG A+FMK
Sbjct:   244 GVNFDLAQVLTQAPFYPGVEHVSGDMFVEVPKGDAVFMK 282

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199597 IGMT3 "indole glucosinolate O-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 123/257 (47%), Positives = 169/257 (65%)

Query:    17 DEQDFLLAMELASGAVLPMTIKSATELGLLEIM-AKASPTQ--LSSSEIASQLPTN--NK 71
             D +  L+A+ LA+ A  PM +K++ ELG+ + + A+AS T   LS SEIAS+LPT   N 
Sbjct:    22 DNELGLMAVRLANAAAFPMVLKASLELGVFDTLYAEASRTDSFLSPSEIASKLPTTPRNP 81

Query:    72 KAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPN--KDGVSLAPTLL 129
              AP++LDRMLRLLASYS + C  VS   G  QR+Y   P+ ++F+ N  +D  SLA  ++
Sbjct:    82 GAPVLLDRMLRLLASYSMVKCEKVSV--GKEQRVYRAEPICRFFLKNNIQDIGSLASQVI 139

Query:   130 IIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVM 189
             +  D V +++W+  KD +LEG   F +AH GM  F     DER + LFNQ+    T  V+
Sbjct:   140 VNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQT--GFTIAVV 197

Query:   190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHV 249
             K+ LE+Y+GF+G+N LVDV GG+G  L  + SKYP ++GINFDL   L  AP+ PGVEHV
Sbjct:   198 KKALEVYQGFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPTYPGVEHV 257

Query:   250 GGDMFVEVPKGQAIFMK 266
              GDMFV+VP G A+ +K
Sbjct:   258 AGDMFVDVPTGNAMILK 274

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199582 IGMT4 "indole glucosinolate O-methyltransferase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 122/257 (47%), Positives = 171/257 (66%)

Query:    17 DEQDFLLAMELASGAVLPMTIKSATELGLLEIM-AKASPTQ--LSSSEIASQLPTN--NK 71
             D +  L+A+ LA+ A  PM +K+A ELG+ + + A+AS +   LS SEIAS+LPT   N 
Sbjct:    22 DNELGLMAVRLANAAAFPMVLKAALELGVFDTLYAEASRSDSFLSPSEIASKLPTTPRNP 81

Query:    72 KAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPN--KDGVSLAPTLL 129
             +AP++LDRMLRLLASYS + C  VS  +G  +R+Y   P+ ++F+ +  +D  SLA  ++
Sbjct:    82 EAPVLLDRMLRLLASYSVVKCGKVS--EGKGERVYRAEPICRFFLKDNIQDIGSLASQVI 139

Query:   130 IIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVM 189
             +  D V +++W+  KD +LEG   F +AH GM  F     DER + LFNQ+    T  V+
Sbjct:   140 VNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQT--GFTIAVV 197

Query:   190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHV 249
             K+ LE+Y+GF+G+N LVDV GG+G  L  + SKYP ++GINFDL   L  APS PGVEHV
Sbjct:   198 KKALEVYQGFKGVNVLVDVGGGVGNTLGVVASKYPNIKGINFDLTCALAQAPSYPGVEHV 257

Query:   250 GGDMFVEVPKGQAIFMK 266
              GDMFV+VP G A+ +K
Sbjct:   258 AGDMFVDVPTGDAMILK 274

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199587 IGMT2 "indole glucosinolate O-methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 123/257 (47%), Positives = 169/257 (65%)

Query:    17 DEQDFLLAMELASGAVLPMTIKSATELGLLEIM-AKASPTQ--LSSSEIASQLPTN--NK 71
             D +  L+A+ LA+ A  PM +K++ ELG+ + + A+AS T   LS SEIAS+LPT   N 
Sbjct:    22 DNELGLMAVRLANAAAFPMVLKASLELGVFDTLYAEASRTDSFLSPSEIASKLPTTPRNP 81

Query:    72 KAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPN--KDGVSLAPTLL 129
              AP++LDRMLRLLASYS + C  VS   G  +R+Y   P+ ++F+ N  +D  SLA  ++
Sbjct:    82 GAPVLLDRMLRLLASYSMVKCEKVSVGKG--ERVYRAEPICRFFLKNNIQDIGSLASQVI 139

Query:   130 IIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVM 189
             +  D V +++W+  KD +LEG   F +AH GM  F     DER + LFNQ+    T  V+
Sbjct:   140 VNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQT--GFTIAVV 197

Query:   190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHV 249
             K+ LE+Y+GF+G+N LVDV GG+G  L  + SKYP ++GINFDL   L  APS PGVEHV
Sbjct:   198 KKALEVYQGFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYPGVEHV 257

Query:   250 GGDMFVEVPKGQAIFMK 266
              GDMFV+VP G A+ +K
Sbjct:   258 AGDMFVDVPTGDAMILK 274

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA;IDA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042343 "indole glucosinolate metabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 119/257 (46%), Positives = 166/257 (64%)

Query:    17 DEQDFLLAMELASGAVLPMTIKSATELGLLEIM-AKASPTQ--LSSSEIASQLPTN--NK 71
             D +  L+A+ LA+ A  PM +K+A ELG+ + + A AS T   LS  EIAS+LPT   N 
Sbjct:    22 DNELGLMAVRLANAAAFPMVLKAALELGVFDTLYAAASRTDSFLSPYEIASKLPTTPRNP 81

Query:    72 KAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPN--KDGVSLAPTLL 129
             +AP++LDRMLRLLASYS + C    +  G  +R+Y   P+ ++F+ +  +D  SLA  ++
Sbjct:    82 EAPVLLDRMLRLLASYSMVKCGKALSGKG--ERVYRAEPICRFFLKDNIQDIGSLASQVI 139

Query:   130 IIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVM 189
             +  D V +++W+  KD +LEG   F +AH GM  F     DER + LFNQ+    T  V+
Sbjct:   140 VNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQT--GFTIAVV 197

Query:   190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHV 249
             K+ LE+Y+GF+G+  LVDV GG+G  L  + SKYP ++GINFDL   L  APS PGVEHV
Sbjct:   198 KKALEVYEGFKGVKVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYPGVEHV 257

Query:   250 GGDMFVEVPKGQAIFMK 266
              GDMFV+VP G A+ +K
Sbjct:   258 AGDMFVDVPTGDAMILK 274

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA;IDA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042343 "indole glucosinolate metabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FK25	OMT1_ARATH	2, ., 1, ., 1, ., 7, 6	0.5977	0.9586	0.7024	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	COMT2	SubName- Full=Putative uncharacterized protein (Caffeic acid 3-O-methyltransferase); (365 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	F3'5'H1	flavonoid 3',5'-hydroxylase (EC-1.14.13.88) (505 aa)						•			0.899
	CYP75A13	cytochrome P450 flavonoid 3',5'-hydroxylase (EC-1.14.13.88) (508 aa)						•			0.899
	F3H1	flavonoid 3'-hydroxylase (EC-1.14.13.21) (521 aa)						•			0.899
	FLS3	flavonol synthase 3 (335 aa)						•			0.800
	FLS4	SubName- Full=Putative uncharacterized protein; (335 aa)						•			0.800
	f5h	SubName- Full=Ferulate-5-hydroxylase; Flags- Precursor; (501 aa)							•		0.700
	SAD	SubName- Full=Cinnamyl alcohol dehydrogenase; (362 aa)							•		0.681
	CAM1	RecName- Full=Caffeoyl-CoA O-methyltransferase 1; EC=2.1.1.104; AltName- Full=Trans-caffeoyl-Co [...] (248 aa)							•		0.649
	Ptr4CL1	4-Coumarate-CoA ligase (EC-6.2.1.12) (540 aa)							•		0.510
	CCR5	cinnamoyl CoA reductase (EC-1.2.1.44) (230 aa)							•		0.510

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	266
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	2e-64
pfam08100	50	pfam08100, Dimerisation, Dimerisation domain	1e-14
TIGR02716	306	TIGR02716, C20_methyl_CrtF, C-20 methyltransferase	1e-04

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  201 bits (513), Expect = 2e-64
 Identities = 79/164 (48%), Positives = 99/164 (60%), Gaps = 1/164 (0%)

Query: 103 QRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMD 162
              YGLTP SK  V  +D  SLAP LL+  D   ++SW+  KDA+ EG  PF +A  GM 
Sbjct: 4   GEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAF-GMP 62

Query: 163 GFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSK 222
            F     D   N +FN++M  H+ +VMK+ILE    F GL+ LVDV GG GA   +IV  
Sbjct: 63  FFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRA 122

Query: 223 YPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
           YP ++GI FDLPHV+  APS   VE VGGD F  VP+  AI +K
Sbjct: 123 YPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLK 166

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain

 Score = 66.1 bits (162), Expect = 1e-14
 Identities = 29/51 (56%), Positives = 39/51 (76%), Gaps = 1/51 (1%)

Query: 35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLA 85
          M +K A ELG+ +I+AK     LS SE+AS+LPT N +AP++LDR+LRLLA
Sbjct: 1  MVLKCAIELGIPDIIAKHGKP-LSPSELASKLPTVNPEAPVMLDRLLRLLA 50

This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50

>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 34/204 (16%), Positives = 70/204 (34%), Gaps = 28/204 (13%)

Query: 37  IKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVS 96
           +K+A EL L   MA+      + +     +P   +     L +M             +++
Sbjct: 7   MKAAIELDLFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQM------------RVIN 54

Query: 97  NKDGSVQRLYGLTPVSKYFVPNKD---GVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVP 153
            +DG       LT  + Y          +   P    +      D +       + G   
Sbjct: 55  LEDGKWS----LTEFADYMFSPTPKEPNLHQTPVAKAMAFLA--DDFYMGLSQAVRGQKN 108

Query: 154 FMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLG 213
           F                 R +NL+ + +H        ++L      +G+ +++DV GG+G
Sbjct: 109 FKG-------QVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIG 161

Query: 214 ANLKSIVSKYPQLRGINFDLPHVL 237
               +++  +P+L     +LP  +
Sbjct: 162 DISAAMLKHFPELDSTILNLPGAI 185

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	266
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	100.0
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.97
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.97
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	98.94
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.69
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.52
PRK06922	677	hypothetical protein; Provisional	98.5
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.48
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.44
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.38
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.36
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.35
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.26
PRK04457	262	spermidine synthase; Provisional	98.22
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.2
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.19
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.18
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.17
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.17
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.16
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.14
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.12
COG2890	280	HemK Methylase of polypeptide chain release factor	98.09
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.08
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.03
PLN02244	340	tocopherol O-methyltransferase	98.01
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.01
PRK11207	197	tellurite resistance protein TehB; Provisional	97.99
PRK10258	251	biotin biosynthesis protein BioC; Provisional	97.98
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.97
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.96
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.96
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.96
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.95
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	97.94
PLN02233	261	ubiquinone biosynthesis methyltransferase	97.94
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.93
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	97.92
PRK07402	196	precorrin-6B methylase; Provisional	97.9
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	97.89
PLN02336	475	phosphoethanolamine N-methyltransferase	97.89
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	97.88
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.88
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	97.87
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.86
PRK08317	241	hypothetical protein; Provisional	97.86
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.85
PRK06202	232	hypothetical protein; Provisional	97.85
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	97.85
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.85
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	97.84
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	97.84
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.84
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.82
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.81
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	97.81
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.8
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.78
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.78
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.77
PLN02490	340	MPBQ/MSBQ methyltransferase	97.76
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.71
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.7
PLN03075	296	nicotianamine synthase; Provisional	97.69
PHA03411	279	putative methyltransferase; Provisional	97.69
COG4123	248	Predicted O-methyltransferase [General function pr	97.64
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.64
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.62
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.6
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.6
PRK05785	226	hypothetical protein; Provisional	97.6
PLN02366	308	spermidine synthase	97.58
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.55
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	97.54
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.54
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	97.53
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.53
PRK00811	283	spermidine synthase; Provisional	97.52
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	97.51
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.51
PRK01581	374	speE spermidine synthase; Validated	97.44
PRK14968	188	putative methyltransferase; Provisional	97.42
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.42
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.38
PHA03412	241	putative methyltransferase; Provisional	97.36
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.35
TIGR00438	188	rrmJ cell division protein FtsJ.	97.33
PRK12335	287	tellurite resistance protein TehB; Provisional	97.32
PRK03612	521	spermidine synthase; Provisional	97.32
PLN02672	1082	methionine S-methyltransferase	97.31
PRK14967	223	putative methyltransferase; Provisional	97.29
PRK04266	226	fibrillarin; Provisional	97.28
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.27
PLN02336	475	phosphoethanolamine N-methyltransferase	97.25
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	97.25
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.22
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.2
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.2
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.18
PRK04148	134	hypothetical protein; Provisional	97.17
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.14
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.13
KOG2904	328	consensus Predicted methyltransferase [General fun	97.13
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.12
TIGR00452	314	methyltransferase, putative. Known examples to dat	97.09
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.08
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.04
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.03
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.03
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.01
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.0
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	97.0
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	96.99
PLN02823	336	spermine synthase	96.98
TIGR03438	301	probable methyltransferase. This model represents	96.94
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	96.93
KOG1271	227	consensus Methyltransferases [General function pre	96.91
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	96.89
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	96.88
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	96.87
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	96.87
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.86
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.85
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	96.81
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	96.78
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	96.78
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	96.77
PTZ00146	293	fibrillarin; Provisional	96.73
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	96.67
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	96.65
PLN02585	315	magnesium protoporphyrin IX methyltransferase	96.63
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	96.63
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.58
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	96.57
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	96.5
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.49
PRK00536	262	speE spermidine synthase; Provisional	96.45
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.45
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	96.45
TIGR02431	248	pcaR_pcaU beta-ketoadipate pathway transcriptional	96.4
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	96.38
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	96.37
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	96.33
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.32
PRK10141	117	DNA-binding transcriptional repressor ArsR; Provis	96.3
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	96.3
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	96.29
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	96.25
COG2345	218	Predicted transcriptional regulator [Transcription	96.19
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.19
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	96.18
PF14947	77	HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_	96.17
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	96.14
COG1414	246	IclR Transcriptional regulator [Transcription]	96.11
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.1
PRK15090	257	DNA-binding transcriptional regulator KdgR; Provis	96.09
PHA00738	108	putative HTH transcription regulator	96.08
PF13601	80	HTH_34: Winged helix DNA-binding domain; PDB: 1UB9	96.05
PF01022	47	HTH_5: Bacterial regulatory protein, arsR family;	96.05
PF13463	68	HTH_27: Winged helix DNA-binding domain; PDB: 3GFL	96.02
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	95.98
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	95.98
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	95.91
smart00419	48	HTH_CRP helix_turn_helix, cAMP Regulatory protein.	95.89
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	95.87
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	95.87
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	95.87
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	95.86
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	95.85
KOG2899	288	consensus Predicted methyltransferase [General fun	95.81
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	95.78
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	95.78
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	95.77
smart00347	101	HTH_MARR helix_turn_helix multiple antibiotic resi	95.75
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	95.72
TIGR02702	203	SufR_cyano iron-sulfur cluster biosynthesis transc	95.72
PRK10163	271	DNA-binding transcriptional repressor AllR; Provis	95.71
cd00092	67	HTH_CRP helix_turn_helix, cAMP Regulatory protein	95.71
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	95.67
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	95.66
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	95.63
PRK11569	274	transcriptional repressor IclR; Provisional	95.61
PRK09834	263	DNA-binding transcriptional activator MhpR; Provis	95.57
PRK14904	445	16S rRNA methyltransferase B; Provisional	95.5
PF13679	141	Methyltransf_32: Methyltransferase domain	95.49
PF02082	83	Rrf2: Transcriptional regulator; InterPro: IPR0009	95.49
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	95.43
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	95.4
TIGR02337	118	HpaR homoprotocatechuate degradation operon regula	95.35
PRK13256	226	thiopurine S-methyltransferase; Reviewed	95.31
PRK10857	164	DNA-binding transcriptional regulator IscR; Provis	95.3
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	95.26
PLN02476	278	O-methyltransferase	95.21
COG4262	508	Predicted spermidine synthase with an N-terminal m	95.1
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	95.07
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	95.06
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	95.0
TIGR02010	135	IscR iron-sulfur cluster assembly transcription fa	94.99
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	94.93
PF12802	62	MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP	94.9
PRK14901	434	16S rRNA methyltransferase B; Provisional	94.89
COG1959	150	Predicted transcriptional regulator [Transcription	94.86
PRK03902	142	manganese transport transcriptional regulator; Pro	94.86
TIGR02944	130	suf_reg_Xantho FeS assembly SUF system regulator,	94.84
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	94.8
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.77
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	94.75
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	94.71
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	94.66
PRK11512	144	DNA-binding transcriptional repressor MarR; Provis	94.49
KOG3115	249	consensus Methyltransferase-like protein [General	94.45
PRK14903	431	16S rRNA methyltransferase B; Provisional	94.44
smart00420	53	HTH_DEOR helix_turn_helix, Deoxyribose operon repr	94.36
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	94.3
PF01047	59	MarR: MarR family; InterPro: IPR000835 The MarR-ty	94.29
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	94.26
KOG3010	261	consensus Methyltransferase [General function pred	94.25
PRK11920	153	rirA iron-responsive transcriptional regulator; Re	94.23
smart00418	66	HTH_ARSR helix_turn_helix, Arsenical Resistance Op	94.19
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	94.18
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	94.12
COG3355	126	Predicted transcriptional regulator [Transcription	94.09
PRK11050	152	manganese transport regulator MntR; Provisional	94.06
smart00344	108	HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto	93.94
TIGR01884	203	cas_HTH CRISPR locus-related DNA-binding protein.	93.83
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	93.82
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	93.75
TIGR00738	132	rrf2_super rrf2 family protein (putative transcrip	93.72
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	93.69
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	93.61
COG4742	260	Predicted transcriptional regulator [Transcription	93.51
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	93.47
COG1321	154	TroR Mn-dependent transcriptional regulator [Trans	93.46
cd00090	78	HTH_ARSR Arsenical Resistance Operon Repressor and	93.4
KOG2361	264	consensus Predicted methyltransferase [General fun	93.37
PF07381	90	DUF1495: Winged helix DNA-binding domain (DUF1495)	93.35
PF01638	90	HxlR: HxlR-like helix-turn-helix; InterPro: IPR002	93.25
PLN02589	247	caffeoyl-CoA O-methyltransferase	93.16
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.16
PF04967	53	HTH_10: HTH DNA binding domain; InterPro: IPR00705	93.09
COG4189	308	Predicted transcriptional regulator [Transcription	92.97
PRK06266	178	transcription initiation factor E subunit alpha; V	92.9
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	92.9
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	92.85
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	92.77
TIGR01889	109	Staph_reg_Sar staphylococcal accessory regulator f	92.72
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	92.64
TIGR00122	69	birA_repr_reg BirA biotin operon repressor domain.	92.63
PF08461	66	HTH_12: Ribonuclease R winged-helix domain; InterP	92.51
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	92.27
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	92.22
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	92.19
COG4122	219	Predicted O-methyltransferase [General function pr	92.14
PRK15431	78	ferrous iron transport protein FeoC; Provisional	92.12
PRK10870	176	transcriptional repressor MprA; Provisional	91.57
PF01325	60	Fe_dep_repress: Iron dependent repressor, N-termin	91.41
PRK03573	144	transcriptional regulator SlyA; Provisional	91.4
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	91.31
COG4190	144	Predicted transcriptional regulator [Transcription	91.28
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	91.26
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	91.19
PRK11014	141	transcriptional repressor NsrR; Provisional	91.05
PRK06474	178	hypothetical protein; Provisional	90.93
smart00529	96	HTH_DTXR Helix-turn-helix diphteria tox regulatory	90.85
TIGR01610	95	phage_O_Nterm phage replication protein O, N-termi	90.76
KOG2730	263	consensus Methylase [General function prediction o	90.74
COG2384	226	Predicted SAM-dependent methyltransferase [General	90.61
COG3432	95	Predicted transcriptional regulator [Transcription	90.58
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	90.34
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	90.31
PRK14165	217	winged helix-turn-helix domain-containing protein/	90.24
PRK11179	153	DNA-binding transcriptional regulator AsnC; Provis	90.19
PF10007	92	DUF2250: Uncharacterized protein conserved in arch	90.15
PF02002	105	TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024	90.05
PF00325	32	Crp: Bacterial regulatory proteins, crp family; In	89.97
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	89.79
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	89.63
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	89.56
PRK11169	164	leucine-responsive transcriptional regulator; Prov	89.19
cd07377	66	WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi	89.18
COG4565	224	CitB Response regulator of citrate/malate metaboli	89.15
COG4076	252	Predicted RNA methylase [General function predicti	88.89
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	88.81
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	88.74
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	88.71
PLN02853	492	Probable phenylalanyl-tRNA synthetase alpha chain	88.43
PF13545	76	HTH_Crp_2: Crp-like helix-turn-helix domain; PDB:	88.41
PRK04172	489	pheS phenylalanyl-tRNA synthetase subunit alpha; P	88.36
smart00345	60	HTH_GNTR helix_turn_helix gluconate operon transcr	88.31
PHA02943	165	hypothetical protein; Provisional	88.29
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	88.04
PF04182	75	B-block_TFIIIC: B-block binding subunit of TFIIIC;	87.53
cd07153	116	Fur_like Ferric uptake regulator(Fur) and related	87.39
PF01726	65	LexA_DNA_bind: LexA DNA binding domain; InterPro:	87.36
COG1846	126	MarR Transcriptional regulators [Transcription]	87.16
PRK13777	185	transcriptional regulator Hpr; Provisional	87.12
COG1733	120	Predicted transcriptional regulators [Transcriptio	87.04
COG1522	154	Lrp Transcriptional regulators [Transcription]	86.54
PF14394	171	DUF4423: Domain of unknown function (DUF4423)	86.52
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	85.93
TIGR00498	199	lexA SOS regulatory protein LexA. LexA acts as a h	85.55
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	85.55
PRK10742	250	putative methyltransferase; Provisional	85.24
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	85.14
PRK05638	442	threonine synthase; Validated	84.89
PTZ00326	494	phenylalanyl-tRNA synthetase alpha chain; Provisio	84.78
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	84.59
COG1378	247	Predicted transcriptional regulators [Transcriptio	84.07
PRK13509	251	transcriptional repressor UlaR; Provisional	83.74
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	83.0
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	82.62
PF07789	155	DUF1627: Protein of unknown function (DUF1627); In	82.47
PF05584	72	Sulfolobus_pRN: Sulfolobus plasmid regulatory prot	82.41
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	82.36
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	82.07
PF08221	62	HTH_9: RNA polymerase III subunit RPC82 helix-turn	81.85
PF08784	102	RPA_C: Replication protein A C terminal; InterPro:	81.79
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	81.64
PF05732	165	RepL: Firmicute plasmid replication protein (RepL)	81.47
PRK04214	412	rbn ribonuclease BN/unknown domain fusion protein;	80.91
PF03444	78	HrcA_DNA-bdg: Winged helix-turn-helix transcriptio	80.8
PRK10906	252	DNA-binding transcriptional repressor GlpR; Provis	80.57
COG1510	177	Predicted transcriptional regulators [Transcriptio	80.55

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=100.00  E-value=2.5e-34  Score=252.30  Aligned_cols=240  Identities=54%  Similarity=0.885  Sum_probs=216.6

Q ss_pred             cChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCC-CCCCCcchHHHHHHHHhcCCcccccc
Q 046424           16 RDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPT-NNKKAPIILDRMLRLLASYSFLTCNL   94 (266)
Q Consensus        16 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~-~~~~~~~~l~rlLr~L~~~g~l~~~~   94 (266)
                      ++.....+++++++++..++++.+|+||||||+|.+++  +  ..|||..+.. .+|.++..++|+||.|++.+++++..
T Consensus         2 ~e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~--~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~   77 (342)
T KOG3178|consen    2 EENEASLRAMRLANGFALPMVLKAACELGVFDILANAG--S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRL   77 (342)
T ss_pred             chhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC--C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeee
Confidence            45667788999999999999999999999999999975  3  8888888874 24558889999999999999999873


Q ss_pred             ccCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHH
Q 046424           95 VSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERIN  174 (266)
Q Consensus        95 ~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~  174 (266)
                      ..   +  + .|++++++++++.+.+..|++.+++..+.+..++.|.++.++++.+..+|..++ |+.+|+|...++...
T Consensus        78 ~~---~--~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~-G~~l~~~~~~~~~~~  150 (342)
T KOG3178|consen   78 VG---G--E-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAH-GMMLGGYGGADERFS  150 (342)
T ss_pred             ec---c--e-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCcccc-chhhhhhcccccccH
Confidence            11   1  3 899999999998776556899999888888999999999999999999999999 888999999988888


Q ss_pred             HHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-CCceEEeccC
Q 046424          175 NLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-PGVEHVGGDM  253 (266)
Q Consensus       175 ~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-~ri~~~~gD~  253 (266)
                      ..|+++|...+....+.+++.|.+|++..+.||||||.|..+..++..||+++++.+|+|.|++.++.. ++|+.+.|||
T Consensus       151 ~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdm  230 (342)
T KOG3178|consen  151 KDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDM  230 (342)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccc
Confidence            999999999998877888999988999999999999999999999999999999999999999999987 8999999999


Q ss_pred             CCCCCCCCEEEeC
Q 046424          254 FVEVPKGQAIFMK  266 (266)
Q Consensus       254 f~~~P~~D~~~lk  266 (266)
                      |++.|.+|+||||
T Consensus       231 fq~~P~~daI~mk  243 (342)
T KOG3178|consen  231 FQDTPKGDAIWMK  243 (342)
T ss_pred             cccCCCcCeEEEE
Confidence            9999999999996

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.97  E-value=1.6e-31  Score=230.30  Aligned_cols=162  Identities=29%  Similarity=0.514  Sum_probs=144.2

Q ss_pred             ccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHHHHHHH
Q 046424          103 QRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMH  182 (266)
Q Consensus       103 ~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f~~~m~  182 (266)
                      ++.|++|++|+.|+.++++.++..++.+...+..+.+|.+|++++++|+++|+.++ |.++|+|++++|+..+.|+++|.
T Consensus         3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~-g~~~~~~~~~~~~~~~~f~~~m~   81 (241)
T PF00891_consen    3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAF-GTPFFEYLEEDPELAKRFNAAMA   81 (241)
T ss_dssp             TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHH-SS-HHHHHHCSHHHHHHHHHHHH
T ss_pred             CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhc-CCcHHHhhhhChHHHHHHHHHHH
Confidence            68999999999999887655778888776678899999999999999999999999 88899999999999999999999


Q ss_pred             hcchhhH-HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEEeccCCCCCCCCC
Q 046424          183 NHTTIVM-KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQ  261 (266)
Q Consensus       183 ~~~~~~~-~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~~~P~~D  261 (266)
                      ..+.... +.+++.++ |++.++|||||||+|.++.+++++||++++|++|+|+|++.+++.+||++++||||+++|.+|
T Consensus        82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D  160 (241)
T PF00891_consen   82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD  160 (241)
T ss_dssp             HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred             hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence            9998877 77888888 999999999999999999999999999999999999999988878999999999999999999


Q ss_pred             EEEeC
Q 046424          262 AIFMK  266 (266)
Q Consensus       262 ~~~lk  266 (266)
                      +|+||
T Consensus       161 ~~~l~  165 (241)
T PF00891_consen  161 VYLLR  165 (241)
T ss_dssp             EEEEE
T ss_pred             ceeee
Confidence            99985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.97  E-value=4e-30  Score=229.10  Aligned_cols=210  Identities=18%  Similarity=0.303  Sum_probs=159.9

Q ss_pred             hHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchh
Q 046424           32 VLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPV  111 (266)
Q Consensus        32 ~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~  111 (266)
                      +..++|++|++|||||.|.+ |  |.|++|||+++|+    +++.++|+||+|++.|+|++.         +++|++|++
T Consensus         2 ~~~~~l~aa~~Lglfd~L~~-g--p~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~~---------~~~y~~t~~   65 (306)
T TIGR02716         2 IEFSCMKAAIELDLFSHMAE-G--PKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE---------DGKWSLTEF   65 (306)
T ss_pred             chHHHHHHHHHcCcHHHHhc-C--CCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEec---------CCcEecchh
Confidence            45789999999999999987 4  9999999999999    999999999999999999986         688999999


Q ss_pred             cccccCCCCCC---ChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHHHHHHHhcchhh
Q 046424          112 SKYFVPNKDGV---SLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIV  188 (266)
Q Consensus       112 s~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f~~~m~~~~~~~  188 (266)
                      +..++.+.++.   ++.++..+.. ......|.+|+++++. +++|...      +++....++....|...+.......
T Consensus        66 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~r~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  137 (306)
T TIGR02716        66 ADYMFSPTPKEPNLHQTPVAKAMA-FLADDFYMGLSQAVRG-QKNFKGQ------VPYPPVTREDNLYFEEIHRSNAKFA  137 (306)
T ss_pred             HHhhccCCccchhhhcCchHHHHH-HHHHHHHHhHHHHhcC-Ccccccc------cCCCCCCHHHHHhHHHHHHhcchhH
Confidence            99877665432   1123333321 1223578999999974 4444332      2222333333333443333444444


Q ss_pred             HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEEeccCCC-CCCCC
Q 046424          189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-------PGVEHVGGDMFV-EVPKG  260 (266)
Q Consensus       189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~~gD~f~-~~P~~  260 (266)
                      .+.+++.++ +++..+|||||||+|.+++.+++++|+++++++|+|++++.++++       +||+++.+|+|+ ++|.+
T Consensus       138 ~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~  216 (306)
T TIGR02716       138 IQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA  216 (306)
T ss_pred             HHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCC
Confidence            556777777 888899999999999999999999999999999999999876542       689999999997 67777


Q ss_pred             CEEEeC
Q 046424          261 QAIFMK  266 (266)
Q Consensus       261 D~~~lk  266 (266)
                      |+|+++
T Consensus       217 D~v~~~  222 (306)
T TIGR02716       217 DAVLFC  222 (306)
T ss_pred             CEEEeE
Confidence            998864

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=98.94  E-value=1.1e-09  Score=70.82  Aligned_cols=51  Identities=51%  Similarity=0.757  Sum_probs=42.1

Q ss_pred             HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHh
Q 046424           35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLA   85 (266)
Q Consensus        35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~   85 (266)
                      ++|++|+||||||+|+..|.+++|++||+.++...+|.++..++|+||+|+
T Consensus         1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~   51 (51)
T PF08100_consen    1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV   51 (51)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred             CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence            589999999999999988645999999999999324446778999999985

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.69  E-value=2.6e-08  Score=74.98  Aligned_cols=64  Identities=20%  Similarity=0.369  Sum_probs=53.4

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccC-CC-CCCCC-CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDM-FV-EVPKG-QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~-f~-~~P~~-D~~~l  265 (266)
                      ..+|+|||||+|.++..+++++|+.+++++|. |..++.++.       .+||+++.+|+ +. +.+.. |+++.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~   76 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVIC   76 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEE
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEE
Confidence            46899999999999999999999999999999 567776553       38999999999 44 45445 98875

...

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.52  E-value=2.9e-07  Score=76.16  Aligned_cols=72  Identities=22%  Similarity=0.428  Sum_probs=58.1

Q ss_pred             HHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCCC-CEEE
Q 046424          193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPKG-QAIF  264 (266)
Q Consensus       193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~~-D~~~  264 (266)
                      +..++ .....+|+|||||+|.++..+++++|+.+++++|. |+.++.++.+      ++|+++.+|...+++.. |+++
T Consensus        24 ~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~  102 (187)
T PRK08287         24 LSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIF  102 (187)
T ss_pred             HHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEE
Confidence            34444 55678999999999999999999999999999999 5677766531      57999999987666655 9887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       103 ~  103 (187)
T PRK08287        103 I  103 (187)
T ss_pred             E
Confidence            5

>PRK06922 hypothetical protein; Provisional

Probab=98.50  E-value=3.7e-07  Score=87.74  Aligned_cols=104  Identities=16%  Similarity=0.142  Sum_probs=76.1

Q ss_pred             CcchhccccChhHHHHHHHHHHhcchhh--HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HH
Q 046424          161 MDGFAAAAKDERINNLFNQSMHNHTTIV--MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VL  237 (266)
Q Consensus       161 ~~~~~~~~~~p~~~~~f~~~m~~~~~~~--~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi  237 (266)
                      ..+|+++...++..++|...|.......  .......++ +.+..+|+|||||+|.++..+++.+|+.+++++|+++ ++
T Consensus       377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML  455 (677)
T PRK06922        377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI  455 (677)
T ss_pred             hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            5688888888877888877665533321  111223344 5567899999999999999999999999999999976 57


Q ss_pred             hhCCCC-----CCceEEeccCCC-C--CCCC--CEEEe
Q 046424          238 KHAPSC-----PGVEHVGGDMFV-E--VPKG--QAIFM  265 (266)
Q Consensus       238 ~~a~~~-----~ri~~~~gD~f~-~--~P~~--D~~~l  265 (266)
                      +.++..     .+++++.+|..+ +  +|.+  |++++
T Consensus       456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs  493 (677)
T PRK06922        456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY  493 (677)
T ss_pred             HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence            665532     467889999876 3  5543  99875

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.48  E-value=8.6e-07  Score=76.98  Aligned_cols=74  Identities=22%  Similarity=0.296  Sum_probs=60.5

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCCCCCC-C-CEEEe
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      ..+++.++ .....+|||||||+|.++..+++++|+.+++++|+ |..++.+++ .+++++.+|+.+..|. . |+++.
T Consensus        19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~   95 (255)
T PRK14103         19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS   95 (255)
T ss_pred             HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence            46677776 56679999999999999999999999999999999 668887765 4799999998753333 3 99875

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.44  E-value=4.9e-07  Score=75.24  Aligned_cols=86  Identities=20%  Similarity=0.314  Sum_probs=69.3

Q ss_pred             HHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEEeccCC
Q 046424          177 FNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-PGVEHVGGDMF  254 (266)
Q Consensus       177 f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gD~f  254 (266)
                      |.++-...+.. +..++..++ ......|+|+|||.|.....|++++|+...+++|. |.+++.|+.. +.++|..+|.-
T Consensus         8 Yl~F~~eRtRP-a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~   85 (257)
T COG4106           8 YLQFEDERTRP-ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLR   85 (257)
T ss_pred             HHHHHHhccCc-HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHh
Confidence            33333444443 467888888 78899999999999999999999999999999998 5688887654 88999999999


Q ss_pred             CCCCCC--CEEE
Q 046424          255 VEVPKG--QAIF  264 (266)
Q Consensus       255 ~~~P~~--D~~~  264 (266)
                      +..|..  |+++
T Consensus        86 ~w~p~~~~dllf   97 (257)
T COG4106          86 TWKPEQPTDLLF   97 (257)
T ss_pred             hcCCCCccchhh
Confidence            977753  7654

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.38  E-value=2.4e-06  Score=74.12  Aligned_cols=76  Identities=26%  Similarity=0.414  Sum_probs=61.4

Q ss_pred             HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEEeccCCCCCCC-C-CEEE
Q 046424          189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-PGVEHVGGDMFVEVPK-G-QAIF  264 (266)
Q Consensus       189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gD~f~~~P~-~-D~~~  264 (266)
                      ...+++.++ ..+..+|+|||||+|.++..+++.+|+.+++++|+ |..++.++.. ++++++.+|+.+..|. . |+++
T Consensus        20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~   98 (258)
T PRK01683         20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF   98 (258)
T ss_pred             HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence            346677766 66778999999999999999999999999999999 4577777654 6899999999763333 4 8887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      .
T Consensus        99 ~   99 (258)
T PRK01683         99 A   99 (258)
T ss_pred             E
Confidence            4

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.36  E-value=8.1e-07  Score=70.89  Aligned_cols=65  Identities=18%  Similarity=0.307  Sum_probs=53.0

Q ss_pred             CCceEEEecCCccHHHHHHH-HHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCC-C--CCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIV-SKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-E--VPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~-~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~--~P~~-D~~~l  265 (266)
                      +..+|+|+|||+|.++..++ +.+|..+++++|+. ..++.++.      .+++++..+|+++ +  ++.. |+++.
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~   79 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIIS   79 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEE
Confidence            46899999999999999999 56899999999995 57777664      2689999999999 4  3344 98875

...

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.35  E-value=1.7e-06  Score=72.79  Aligned_cols=66  Identities=12%  Similarity=0.324  Sum_probs=56.5

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-CCCceEEeccCCCCCCCC--CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-CPGVEHVGGDMFVEVPKG--QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-~~ri~~~~gD~f~~~P~~--D~~~l  265 (266)
                      ....+|+|||||+|..+..+++..|..+++++|+. +.++.+++ .+++++..+|++++++.+  |+++.
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~  111 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLT  111 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEE
Confidence            35678999999999999999999999999999985 58888876 378999999999877654  99875

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.26  E-value=3e-06  Score=72.28  Aligned_cols=74  Identities=15%  Similarity=0.203  Sum_probs=57.5

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-CCCCC-
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-EVPKG-  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~P~~-  260 (266)
                      .++..++ .....+|||||||+|.++..+++.+ |+.+++++|+ |..++.++.      .++++++.+|..+ ++|.+ 
T Consensus        36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  114 (231)
T TIGR02752        36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS  114 (231)
T ss_pred             HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence            3445554 5566899999999999999999986 7889999999 456655543      2689999999988 66654 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++++
T Consensus       115 fD~V~~  120 (231)
T TIGR02752       115 FDYVTI  120 (231)
T ss_pred             ccEEEE
Confidence             98875

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK04457 spermidine synthase; Provisional

Probab=98.22  E-value=1.7e-06  Score=75.49  Aligned_cols=65  Identities=18%  Similarity=0.233  Sum_probs=55.7

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCC---CCCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFV---EVPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~---~~P~~-D~~~l  265 (266)
                      .+++|+|||||.|.++..+++.+|+.+++++|+ |.|++.+++       .+|++++.+|..+   ..|.. |+|++
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~  142 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV  142 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence            568999999999999999999999999999999 889987764       2789999999865   34555 99875

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.20  E-value=2.6e-06  Score=69.48  Aligned_cols=65  Identities=22%  Similarity=0.307  Sum_probs=54.4

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC------CCceEEeccCCCCCCC-C-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      ...+++|+|||+|..+..+++++|+.+++.+|.. ..++.++.+      +.++++..|.+++.+. . |+++.
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~  104 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVS  104 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEE
Confidence            4688999999999999999999999999999995 466665432      3499999999998774 4 99875

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00740 methyltransferase, putative

Probab=98.19  E-value=3.1e-06  Score=72.71  Aligned_cols=66  Identities=17%  Similarity=0.193  Sum_probs=54.0

Q ss_pred             CCCceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCCCCEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSK--YPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKGQAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~--~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~D~~~l  265 (266)
                      ....+|+|||||+|.++..++++  +|+.+++++|+ |.+++.++..       .+++++.+|+.+ +.|..|+++.
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~  128 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVIL  128 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEee
Confidence            35578999999999999999997  48999999999 7788776542       479999999998 6666687653

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.18  E-value=2.9e-06  Score=73.36  Aligned_cols=66  Identities=18%  Similarity=0.264  Sum_probs=54.2

Q ss_pred             CCCceEEEecCCccHHHHHHHH--HCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCCCCEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVS--KYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKGQAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~--~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~D~~~l  265 (266)
                      ....+|+|||||+|..+..+++  .+|+.+++++|. |..++.++.+       .+|+++.+|+.+ +.+..|++++
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~  131 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVL  131 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEeh
Confidence            3567999999999999999988  479999999999 7788877542       489999999987 5665687764

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.17  E-value=6.1e-06  Score=70.67  Aligned_cols=65  Identities=23%  Similarity=0.260  Sum_probs=56.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC------CCceEEeccCCC-CCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ...+|||||||+|-++..+++..++.+++++|.. ..++.+++.      ..|+|+.+|..+ |+|..  |++.+
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~  125 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTI  125 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEe
Confidence            4689999999999999999999999999999996 477777652      239999999999 99986  99986

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.17  E-value=3.3e-06  Score=74.62  Aligned_cols=65  Identities=20%  Similarity=0.332  Sum_probs=55.0

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCC-C-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      +..+|+|+|||+|.++..+++++|+.+++.+|+ |..++.++.+       ++|+++.+|+++++|. . |+++.
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~  195 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVS  195 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEE
Confidence            457899999999999999999999999999999 5577766542       5799999999987775 3 98874

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.16  E-value=2.9e-06  Score=75.78  Aligned_cols=63  Identities=21%  Similarity=0.337  Sum_probs=54.4

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCC-C-CEEEe
Q 046424          203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      .+|+|+|||+|.++..+++.+|+.+++.+|+ |..++.++.+       ++|+++.+|+++.+|. . |+++.
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvs  207 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVS  207 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEE
Confidence            6899999999999999999999999999999 6677776542       5799999999987765 3 98874

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.14  E-value=6.3e-06  Score=75.41  Aligned_cols=75  Identities=15%  Similarity=0.139  Sum_probs=58.8

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC---------CCceEEeccCCCCCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC---------PGVEHVGGDMFVEVPK  259 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~---------~ri~~~~gD~f~~~P~  259 (266)
                      +-+++.++ .....+|+|+|||+|..+..+++++|+.+++.+|.. ..++.++.+         .+++++..|.++.++.
T Consensus       218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~  296 (378)
T PRK15001        218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP  296 (378)
T ss_pred             HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence            34566665 333469999999999999999999999999999997 466665531         3789999999987654


Q ss_pred             -C-CEEEe
Q 046424          260 -G-QAIFM  265 (266)
Q Consensus       260 -~-D~~~l  265 (266)
                       . |+|+.
T Consensus       297 ~~fDlIls  304 (378)
T PRK15001        297 FRFNAVLC  304 (378)
T ss_pred             CCEEEEEE
Confidence             4 98875

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.12  E-value=1.2e-05  Score=61.12  Aligned_cols=73  Identities=16%  Similarity=0.187  Sum_probs=54.6

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCC---CCCCC-
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV---EVPKG-  260 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~---~~P~~-  260 (266)
                      +++.+. .....+++|||||.|.++..+++++|+.+++.+|.. ..++.++.      .++++++.+|...   ..+.. 
T Consensus        11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (124)
T TIGR02469        11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP   89 (124)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence            344444 445579999999999999999999999999999994 45555432      2678999888764   23334 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |++++
T Consensus        90 D~v~~   94 (124)
T TIGR02469        90 DRVFI   94 (124)
T ss_pred             CEEEE
Confidence            88875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=4.4e-06  Score=73.60  Aligned_cols=62  Identities=24%  Similarity=0.313  Sum_probs=52.8

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCCC-CEEEe
Q 046424          204 QLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPKG-QAIFM  265 (266)
Q Consensus       204 ~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~~-D~~~l  265 (266)
                      +|+|||+|+|..++.+++++|+++++..|+ |+.++.|+.+      .++.++.+|+|++++.. |+++.
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVs  182 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVS  182 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEe
Confidence            899999999999999999999999999999 4577766542      56667777999988876 98875

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.08  E-value=1.3e-05  Score=70.04  Aligned_cols=74  Identities=22%  Similarity=0.358  Sum_probs=58.4

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----CCCceEEeccCCC-CCCCC--C
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----CPGVEHVGGDMFV-EVPKG--Q  261 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~~ri~~~~gD~f~-~~P~~--D  261 (266)
                      ..+++.+. .....+|||||||+|..+..+++.+ ..+++++|+. ..++.++.    .++|+++.+|+.+ ++|.+  |
T Consensus        42 ~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD  119 (263)
T PTZ00098         42 TKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD  119 (263)
T ss_pred             HHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence            45666665 6677899999999999999998876 6799999995 46665543    3689999999987 67764  9


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus       120 ~V~s  123 (263)
T PTZ00098        120 MIYS  123 (263)
T ss_pred             EEEE
Confidence            9875

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.03  E-value=8.5e-06  Score=71.98  Aligned_cols=63  Identities=21%  Similarity=0.360  Sum_probs=53.8

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCC-C-CEEEe
Q 046424          203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      .+|+|+|||+|.++..++..+|+.+++.+|+ |..++.++.+       .+|+++.+|++++++. . |+++.
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvs  188 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVS  188 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEE
Confidence            6899999999999999999999999999999 5577666542       4699999999998775 4 98874

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PLN02244 tocopherol O-methyltransferase

Probab=98.01  E-value=2e-05  Score=71.43  Aligned_cols=65  Identities=18%  Similarity=0.272  Sum_probs=52.3

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC-------CCCceEEeccCCC-CCCCC--CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS-------CPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~-------~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      +...+|||||||.|.++..+++++ +.+++++|+.+ .++.++.       .++|+++.+|+.+ ++|.+  |+++.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s  192 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWS  192 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEE
Confidence            456899999999999999999988 78999999954 5554432       2589999999988 77764  98874

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.01  E-value=1.1e-05  Score=68.31  Aligned_cols=62  Identities=15%  Similarity=0.273  Sum_probs=50.3

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC-------CCCceEEeccCCC-CCCCC-CEEE
Q 046424          203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS-------CPGVEHVGGDMFV-EVPKG-QAIF  264 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~-------~~ri~~~~gD~f~-~~P~~-D~~~  264 (266)
                      ++|||||||.|.++..+++.+|+.+++++|+.+ .++.++.       .++|+++.+|+.+ ++|.. |+++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~   72 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVF   72 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEee
Confidence            479999999999999999999999999999953 5454443       2689999999977 45555 8876

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=97.99  E-value=1.7e-05  Score=66.18  Aligned_cols=73  Identities=16%  Similarity=0.167  Sum_probs=55.6

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-CCCCC-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-EVPKG-  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~P~~-  260 (266)
                      +.+++.++ .....+|||||||.|..+..++++  ..+++++|+ |..++.++.      ...|++...|+.+ +++.. 
T Consensus        20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f   96 (197)
T PRK11207         20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY   96 (197)
T ss_pred             HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence            46666666 545689999999999999999987  468999999 456665543      1458889999987 55555 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |+++.
T Consensus        97 D~I~~  101 (197)
T PRK11207         97 DFILS  101 (197)
T ss_pred             CEEEE
Confidence            98864

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=97.98  E-value=5e-05  Score=65.65  Aligned_cols=73  Identities=15%  Similarity=0.215  Sum_probs=54.2

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEEeccCCC-CCCCC--CEEE
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-PGVEHVGGDMFV-EVPKG--QAIF  264 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gD~f~-~~P~~--D~~~  264 (266)
                      ..+++.++ .....+|+|||||+|.++..+.+.  ..+++++|+ |..++.++.. ..++++.+|+-+ ++|.+  |+++
T Consensus        32 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~  108 (251)
T PRK10258         32 DALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAW  108 (251)
T ss_pred             HHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEE
Confidence            34455554 335689999999999999888764  468999999 6688777653 456788999877 66654  8886


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      .
T Consensus       109 s  109 (251)
T PRK10258        109 S  109 (251)
T ss_pred             E
Confidence            4

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.97  E-value=8.5e-06  Score=67.89  Aligned_cols=65  Identities=15%  Similarity=0.285  Sum_probs=51.6

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-C---CCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-E---VPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~---~P~~--D~~~l  265 (266)
                      ....++|||||+|.++..+++++|+.+++++|+ +..++.++.      .++|+++.+|+.+ .   +|.+  |.+++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~   93 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL   93 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence            457999999999999999999999999999999 456655543      2589999999975 1   4443  77664

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.96  E-value=1.2e-05  Score=66.32  Aligned_cols=64  Identities=17%  Similarity=0.172  Sum_probs=50.4

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC------CCCceEEeccCCC-CCCCC-CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS------CPGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~------~~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      ..+|+|||||+|..+..++..+|+.+++.+|..+ .++.++.      .++|+++.+|+.+ +.... |+++.
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s  115 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITS  115 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEe
Confidence            5799999999999999999999999999999964 4444332      2579999999977 22223 98874

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.96  E-value=6.9e-06  Score=60.82  Aligned_cols=61  Identities=23%  Similarity=0.418  Sum_probs=45.9

Q ss_pred             EEEecCCccHHHHHHHHHC---CCCeEEEeech-HHHhhCCCC-----CCceEEeccCCC-CCCCC--CEEEe
Q 046424          205 LVDVAGGLGANLKSIVSKY---PQLRGINFDLP-HVLKHAPSC-----PGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       205 vvDVGGG~G~~~~~l~~~~---P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      |+|+|||+|..+..+++.+   |+.+.+++|+. ..++.+++.     .+++++.+|+.+ +++.+  |+|+.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEE
Confidence            7999999999999999997   67899999985 466665542     589999999987 54443  88875

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.96  E-value=1.8e-05  Score=65.64  Aligned_cols=65  Identities=17%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCC-CCCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      ...+|+|||||+|..+..+++++|+.+++.+|.. ..++.++.      .+.|+++.+|+.+ +.+.. |++++
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~  118 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTS  118 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEE
Confidence            4689999999999999999999999999999994 56665543      1459999999877 33333 98875

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.95  E-value=3.3e-06  Score=62.20  Aligned_cols=60  Identities=20%  Similarity=0.325  Sum_probs=40.3

Q ss_pred             EEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC---------CCceEEeccCCCCCCC-C-CEEEe
Q 046424          206 VDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC---------PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       206 vDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~---------~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      ||||||+|.++..+++++|..+.+++|+. +.++.+++.         .++++...|.+...+. . |++++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~   72 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVA   72 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehh
Confidence            69999999999999999999999999995 577777663         2455556666664443 4 99875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=97.94  E-value=2.3e-05  Score=72.28  Aligned_cols=65  Identities=23%  Similarity=0.277  Sum_probs=54.0

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCCC-CCC--C-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFVE-VPK--G-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~~-~P~--~-D~~~l  265 (266)
                      ...+++|||||+|.++..+++++|+.+++.+|+ |..++.++++     .+|+++.+|++++ .|.  . |+++.
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVS  325 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVS  325 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEE
Confidence            446899999999999999999999999999999 6677776642     4799999999984 442  3 88875

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=97.94  E-value=5.7e-05  Score=65.94  Aligned_cols=67  Identities=21%  Similarity=0.211  Sum_probs=53.9

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeech-HHHhhCCC---------CCCceEEeccCCC-CCCCC--CEEE
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLP-HVLKHAPS---------CPGVEHVGGDMFV-EVPKG--QAIF  264 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~a~~---------~~ri~~~~gD~f~-~~P~~--D~~~  264 (266)
                      .....+|+|||||+|.++..+++.+ |+.+++++|+. ..++.+++         .++|+++.+|+.+ |+|.+  |+++
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            4456899999999999999999875 67899999995 46666542         2579999999987 78764  9887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       151 ~  151 (261)
T PLN02233        151 M  151 (261)
T ss_pred             E
Confidence            5

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.93  E-value=1.4e-05  Score=76.12  Aligned_cols=64  Identities=17%  Similarity=0.280  Sum_probs=54.2

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCC-C-CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      ..+|+|||||+|.++..+++.+|+.+++.+|+ |..++.++.+       ++|+++.+|+++.++. . |+++.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvs  212 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVS  212 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEE
Confidence            46899999999999999999999999999999 5577766542       5899999999987665 3 88874

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=97.92  E-value=3.9e-05  Score=67.40  Aligned_cols=75  Identities=17%  Similarity=0.178  Sum_probs=60.2

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCCC------CCceEEeccCCCCCCCC-C
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPSC------PGVEHVGGDMFVEVPKG-Q  261 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~~------~ri~~~~gD~f~~~P~~-D  261 (266)
                      +-+++.++ .....+|+|+|||.|..++.+++.+|+.+.+.+|... .++.++.+      ++..+...|.+++.+.. |
T Consensus       148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd  226 (300)
T COG2813         148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD  226 (300)
T ss_pred             HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence            45677777 4333499999999999999999999999999999974 77777653      34468899999987766 8


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      .|+.
T Consensus       227 ~Iis  230 (300)
T COG2813         227 LIIS  230 (300)
T ss_pred             EEEe
Confidence            8875

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.90  E-value=3.8e-05  Score=63.94  Aligned_cols=63  Identities=19%  Similarity=0.175  Sum_probs=51.1

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV  255 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~  255 (266)
                      +++.++ .....+|+|||||+|.++..+++..|+.+++.+|+ |..++.++++      ++|+++.+|..+
T Consensus        32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~  101 (196)
T PRK07402         32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE  101 (196)
T ss_pred             HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence            445554 55668999999999999999999999999999999 6677766542      579999998865

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=97.89  E-value=1.2e-05  Score=68.98  Aligned_cols=67  Identities=22%  Similarity=0.351  Sum_probs=46.2

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeech-HHHhhCCC------CCCceEEeccCCC-CCCCC--CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      .....+|+|||||+|.++..+++.. |+.+++++|+. ..++.+++      ..+|+++.+|.-+ |+|.+  |++++
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~  122 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTC  122 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEH
Confidence            4456899999999999999999874 67899999995 57777664      2589999999998 88875  99875

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.89  E-value=3.9e-05  Score=72.51  Aligned_cols=73  Identities=18%  Similarity=0.301  Sum_probs=56.5

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-----CCCceEEeccCCC-CCCCC--C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-----CPGVEHVGGDMFV-EVPKG--Q  261 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-----~~ri~~~~gD~f~-~~P~~--D  261 (266)
                      .+++.+. .+...+|+|||||+|..+..+++.+ +.+++++|+. ..++.++.     ..+|+++.+|+++ ++|.+  |
T Consensus       257 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  334 (475)
T PLN02336        257 EFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFD  334 (475)
T ss_pred             HHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEE
Confidence            3455555 5567899999999999999988876 7899999995 46655532     2589999999998 67764  9


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus       335 ~I~s  338 (475)
T PLN02336        335 VIYS  338 (475)
T ss_pred             EEEE
Confidence            8874

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=97.88  E-value=0.00012  Score=62.28  Aligned_cols=73  Identities=18%  Similarity=0.227  Sum_probs=55.5

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCCC-------CCceEEeccCCC-CCCCC-
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFV-EVPKG-  260 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~-~~P~~-  260 (266)
                      ++..+. .....+|+|||||.|.++..+++.+| +.+++++|+. ..++.++..       .+++++.+|+.+ +.+.+ 
T Consensus        43 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  121 (239)
T PRK00216         43 TIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNS  121 (239)
T ss_pred             HHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCC
Confidence            444444 33457999999999999999999998 7899999994 455555432       579999999988 45443 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++++
T Consensus       122 ~D~I~~  127 (239)
T PRK00216        122 FDAVTI  127 (239)
T ss_pred             ccEEEE
Confidence             88864

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.88  E-value=2.3e-05  Score=67.44  Aligned_cols=65  Identities=26%  Similarity=0.402  Sum_probs=53.6

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCCCCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFVEVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~P~~--D~~~l  265 (266)
                      ...+|+|+|||+|.++..+++.+|+.+++++|. |..++.++.      .++++++.+|++++++..  |+++.
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~  160 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVS  160 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEE
Confidence            346899999999999999999999999999998 556665543      257999999999876543  88864

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=97.87  E-value=4.5e-05  Score=61.98  Aligned_cols=72  Identities=13%  Similarity=0.269  Sum_probs=55.4

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC----CCCceEEeccCCC-CCCCC--C
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS----CPGVEHVGGDMFV-EVPKG--Q  261 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~----~~ri~~~~gD~f~-~~P~~--D  261 (266)
                      ..+++.++ +....+++|||||.|.++..++++  ..+++.+|+.+ .++.+++    .++++++.+|+.+ +.+..  |
T Consensus         3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d   79 (169)
T smart00650        3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY   79 (169)
T ss_pred             HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence            34566666 666789999999999999999998  56899999964 5555443    3689999999998 56653  7


Q ss_pred             EEE
Q 046424          262 AIF  264 (266)
Q Consensus       262 ~~~  264 (266)
                      +++
T Consensus        80 ~vi   82 (169)
T smart00650       80 KVV   82 (169)
T ss_pred             EEE
Confidence            665

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.86  E-value=4.9e-05  Score=65.97  Aligned_cols=65  Identities=20%  Similarity=0.278  Sum_probs=53.1

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---CCceEEeccCCCCCC----CC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC---PGVEHVGGDMFVEVP----KG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---~ri~~~~gD~f~~~P----~~-D~~~l  265 (266)
                      +..+++|+|||+|.++..+++.+|..+++.+|+ |..++.++.+   .+++++.+|+++.++    .. |+++.
T Consensus        86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~  159 (251)
T TIGR03704        86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAA  159 (251)
T ss_pred             CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEE
Confidence            345899999999999999999999999999999 6788777653   347899999988554    23 88774

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK08317 hypothetical protein; Provisional

Probab=97.86  E-value=6.1e-05  Score=63.83  Aligned_cols=73  Identities=26%  Similarity=0.410  Sum_probs=56.3

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechH-HHhhCCC-----CCCceEEeccCCC-CCCCC--C
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPH-VLKHAPS-----CPGVEHVGGDMFV-EVPKG--Q  261 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~~a~~-----~~ri~~~~gD~f~-~~P~~--D  261 (266)
                      +++.++ .....+|||||||.|.++..+++.+ |..+++++|+.+ .++.++.     ..++++..+|+.. +++.+  |
T Consensus        11 ~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   89 (241)
T PRK08317         11 TFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFD   89 (241)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCce
Confidence            345455 6667899999999999999999998 888999999954 4554433     2679999999887 66543  8


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus        90 ~v~~   93 (241)
T PRK08317         90 AVRS   93 (241)
T ss_pred             EEEE
Confidence            8765

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.85  E-value=5.3e-05  Score=62.09  Aligned_cols=72  Identities=24%  Similarity=0.270  Sum_probs=57.0

Q ss_pred             HHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC---CCCCCCE
Q 046424          193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV---EVPKGQA  262 (266)
Q Consensus       193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~---~~P~~D~  262 (266)
                      +..+. .....+++|||||+|..+.+++..+|..+++.+|. ++.++.++.      .++++.+.||--+   +.|.-|+
T Consensus        27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da  105 (187)
T COG2242          27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA  105 (187)
T ss_pred             HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence            44444 56778999999999999999999999999999997 445555443      2899999998777   3443499


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      +|+
T Consensus       106 iFI  108 (187)
T COG2242         106 IFI  108 (187)
T ss_pred             EEE
Confidence            886

>PRK06202 hypothetical protein; Provisional

Probab=97.85  E-value=0.0001  Score=62.96  Aligned_cols=66  Identities=17%  Similarity=0.103  Sum_probs=47.1

Q ss_pred             CCCceEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHhhCCCC---CCceEEeccCCC-CCCC-C-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSK----YPQLRGINFDL-PHVLKHAPSC---PGVEHVGGDMFV-EVPK-G-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~vi~~a~~~---~ri~~~~gD~f~-~~P~-~-D~~~l  265 (266)
                      ++..+|+|||||+|.++..+++.    .|+.+++++|+ |..++.++..   .++++..+|.-. +.+. . |+++.
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~  135 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTS  135 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEE
Confidence            46689999999999998888764    56789999999 5677776653   456665554322 2233 3 98875

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=97.85  E-value=5.6e-05  Score=63.56  Aligned_cols=73  Identities=16%  Similarity=0.200  Sum_probs=56.3

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC----CCCceEEeccCCC-CCCCC--CE
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDL-PHVLKHAPS----CPGVEHVGGDMFV-EVPKG--QA  262 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~-~~P~~--D~  262 (266)
                      +++.+. .....+|+|||||.|.++..+++.+|. .+++++|+ |..++.+++    ..+++++.+|+.+ +.+.+  |+
T Consensus        31 ~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~  109 (223)
T TIGR01934        31 AVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDA  109 (223)
T ss_pred             HHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEE
Confidence            344444 445689999999999999999999997 78999999 456665543    2579999999988 55543  88


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      +++
T Consensus       110 i~~  112 (223)
T TIGR01934       110 VTI  112 (223)
T ss_pred             EEE
Confidence            764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.85  E-value=8.6e-05  Score=62.86  Aligned_cols=64  Identities=13%  Similarity=0.083  Sum_probs=48.8

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCCCCEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPKGQAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~~D~~~l  265 (266)
                      .+..+++|||||+|.++..+++.  +.+++++|. |+.++.++..       .++++..+|+.+....-|+++.
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~  125 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVC  125 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEE
Confidence            35689999999999999999886  457899998 4577766541       4899999998763322388764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=97.84  E-value=3.6e-05  Score=65.39  Aligned_cols=65  Identities=20%  Similarity=0.329  Sum_probs=52.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCCC--CCceEEeccCCC-CCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPSC--PGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~~--~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ...+|||||||+|.++..+++.+|+.+++++|+.+ .+..++..  ++++++.+|+.+ ++|..  |+++.
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~  104 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVS  104 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEE
Confidence            34789999999999999999999999999999954 55444432  589999999987 55543  98874

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.84  E-value=4.3e-05  Score=66.30  Aligned_cols=70  Identities=14%  Similarity=0.176  Sum_probs=52.7

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC--CCCC-C
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV--EVPK-G  260 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~--~~P~-~  260 (266)
                      +++.++  ++..+|+|||||+|.++..+++.  ..+++++|+ |+.++.++..       ++++++.+|+.+  +++. .
T Consensus        37 ~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~  112 (255)
T PRK11036         37 LLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETP  112 (255)
T ss_pred             HHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCC
Confidence            444443  34679999999999999999987  467999999 5677776542       578999999866  3443 3


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++++
T Consensus       113 fD~V~~  118 (255)
T PRK11036        113 VDLILF  118 (255)
T ss_pred             CCEEEe
Confidence             98875

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.84  E-value=2.8e-05  Score=65.18  Aligned_cols=72  Identities=17%  Similarity=0.285  Sum_probs=54.4

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCC--C--CCCC
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV--E--VPKG  260 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~--~--~P~~  260 (266)
                      |.+.+.  ....+|+|||||+|.++..+++.+|+.+++.+|.. +.++.++.      .++++++.+|+.+  +  ++.+
T Consensus        33 ~~~~~~--~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~  110 (202)
T PRK00121         33 WAELFG--NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDG  110 (202)
T ss_pred             HHHHcC--CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCcc
Confidence            444444  25689999999999999999999999999999995 46665543      2679999999833  2  4443


Q ss_pred             --CEEEe
Q 046424          261 --QAIFM  265 (266)
Q Consensus       261 --D~~~l  265 (266)
                        |++++
T Consensus       111 ~~D~V~~  117 (202)
T PRK00121        111 SLDRIYL  117 (202)
T ss_pred             ccceEEE
Confidence              77764

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.82  E-value=4.9e-05  Score=69.57  Aligned_cols=73  Identities=15%  Similarity=0.196  Sum_probs=53.9

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCC---CCCCCC-
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMF---VEVPKG-  260 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f---~~~P~~-  260 (266)
                      +++.+. -.....+||||||+|.++..+++++|+..++++|+- ..++.+..      .+.|.++.+|..   ..+|.+ 
T Consensus       114 ~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s  192 (390)
T PRK14121        114 FLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNS  192 (390)
T ss_pred             HHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCc
Confidence            444543 224579999999999999999999999999999984 34444322      257999999973   356654 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |.+++
T Consensus       193 ~D~I~l  198 (390)
T PRK14121        193 VEKIFV  198 (390)
T ss_pred             eeEEEE
Confidence             77764

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.81  E-value=4.4e-05  Score=66.98  Aligned_cols=64  Identities=19%  Similarity=0.297  Sum_probs=52.0

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCC---eEEEeech-HHHhhCCC-CCCceEEeccCCC-CCCCC--CEEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQL---RGINFDLP-HVLKHAPS-CPGVEHVGGDMFV-EVPKG--QAIF  264 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l---~~~v~Dlp-~vi~~a~~-~~ri~~~~gD~f~-~~P~~--D~~~  264 (266)
                      ...+|+|||||+|.++..+++.+|+.   +++++|+. ..++.++. .+.+++..+|..+ +++.+  |+++
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~  156 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAII  156 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEE
Confidence            45789999999999999999998864   67999994 57776654 3789999999988 77664  8876

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.81  E-value=3.8e-05  Score=55.27  Aligned_cols=59  Identities=20%  Similarity=0.337  Sum_probs=46.6

Q ss_pred             EEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC---CCCceEEeccCCC-CCCCC--CEEEe
Q 046424          206 VDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS---CPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       206 vDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~---~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ||||||.|..+..++++ |..+.+++|..+ .++.++.   ..+++++.+|+.+ ++|.+  |+++.
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~   66 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFS   66 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEE
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccc
Confidence            79999999999999999 999999999965 4655543   3567899999998 88865  98875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.80  E-value=7.2e-05  Score=65.36  Aligned_cols=66  Identities=23%  Similarity=0.312  Sum_probs=53.8

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCCCCCC-C-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      .+..+|+|+|||+|..+..+++.+|+.+++++|+. ..++.++.      ..+++++.+|++++.+. . |+++.
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~  181 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVS  181 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEE
Confidence            35679999999999999999999999999999985 45555443      25899999999987663 3 88864

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.78  E-value=7.6e-05  Score=67.66  Aligned_cols=73  Identities=16%  Similarity=0.229  Sum_probs=55.3

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEEeccCCCCCCCC-CEEE
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----PGVEHVGGDMFVEVPKG-QAIF  264 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gD~f~~~P~~-D~~~  264 (266)
                      +++.++ -....+|+|+|||+|.++..+++++|+.+++++|.. ..++.++.+     -..+++.+|.+...+.. |+++
T Consensus       188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIv  266 (342)
T PRK09489        188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMII  266 (342)
T ss_pred             HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEE
Confidence            445444 223458999999999999999999999999999996 466665531     23577889998866655 9887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      .
T Consensus       267 s  267 (342)
T PRK09489        267 S  267 (342)
T ss_pred             E
Confidence            4

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.78  E-value=0.00013  Score=61.75  Aligned_cols=74  Identities=12%  Similarity=0.192  Sum_probs=56.1

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeech-HHHhhCCC------CCCceEEeccCCCCCC-CC-
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFVEVP-KG-  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~~~P-~~-  260 (266)
                      .+++.++ .+...+|+|||||+|..+..+++.. ++.+++.+|.- ..++.+++      .++|+++.+|.++.++ .+ 
T Consensus        67 ~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~  145 (212)
T PRK13942         67 IMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAP  145 (212)
T ss_pred             HHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCC
Confidence            4455555 6677899999999999998888875 45789999984 56665554      2579999999988543 33 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++++
T Consensus       146 fD~I~~  151 (212)
T PRK13942        146 YDRIYV  151 (212)
T ss_pred             cCEEEE
Confidence             99875

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.77  E-value=0.00011  Score=62.10  Aligned_cols=74  Identities=12%  Similarity=0.142  Sum_probs=56.1

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCC--C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPK--G  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~--~  260 (266)
                      .+++.++ .....+|+|||||+|.++..+++..+ +.+++.+|+ |+.++.++.+      ++++++.+|..+..+.  .
T Consensus        68 ~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~  146 (215)
T TIGR00080        68 MMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP  146 (215)
T ss_pred             HHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC
Confidence            4445555 55678999999999999999999865 567899997 5677666532      5799999999884432  3


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++++
T Consensus       147 fD~Ii~  152 (215)
T TIGR00080       147 YDRIYV  152 (215)
T ss_pred             CCEEEE
Confidence             98875

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=97.76  E-value=5.6e-05  Score=68.29  Aligned_cols=65  Identities=25%  Similarity=0.256  Sum_probs=53.7

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---CCceEEeccCCC-CCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC---PGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ...+|||||||+|.++..+++.+|..+++++|+ |..++.+++.   .+++++.+|+.+ +++.+  |+++.
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs  184 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVS  184 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEE
Confidence            457999999999999999999999899999999 4566666542   579999999987 66653  98875

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.71  E-value=0.00017  Score=60.63  Aligned_cols=73  Identities=16%  Similarity=0.105  Sum_probs=54.1

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCCC-------CCceEEeccCCCCCCC--C
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFVEVPK--G  260 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~~~P~--~  260 (266)
                      +++.++ .....+|+|||||+|..+..+++..+ .-+++.+|.- ..++.++++       .+++++.+|+.+.+|.  .
T Consensus        64 ~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~  142 (205)
T PRK13944         64 MCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP  142 (205)
T ss_pred             HHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence            444444 44568999999999999999998865 5688999994 556555431       3689999999885543  3


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++++
T Consensus       143 fD~Ii~  148 (205)
T PRK13944        143 FDAIIV  148 (205)
T ss_pred             ccEEEE
Confidence             98875

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.70  E-value=3.8e-05  Score=58.07  Aligned_cols=62  Identities=23%  Similarity=0.287  Sum_probs=50.7

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-------CCCceEEeccCCC-C--CCCC--CEEEe
Q 046424          203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-------CPGVEHVGGDMFV-E--VPKG--QAIFM  265 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-------~~ri~~~~gD~f~-~--~P~~--D~~~l  265 (266)
                      .+|+|+|||+|.++..+++.. ..+++++|+. ..++.++.       .+|++++.+|+++ .  .+.+  |++++
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~   76 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVT   76 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEE
Confidence            589999999999999999999 8899999995 45565543       2689999999988 3  5544  88876

...

>PLN03075 nicotianamine synthase; Provisional

Probab=97.69  E-value=0.00012  Score=64.59  Aligned_cols=66  Identities=15%  Similarity=0.087  Sum_probs=49.8

Q ss_pred             CCCceEEEecCCccHH--HHHHHHHCCCCeEEEeech-HHHhhCCC--------CCCceEEeccCCCCCC--CC-CEEEe
Q 046424          200 EGLNQLVDVAGGLGAN--LKSIVSKYPQLRGINFDLP-HVLKHAPS--------CPGVEHVGGDMFVEVP--KG-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~--~~~l~~~~P~l~~~v~Dlp-~vi~~a~~--------~~ri~~~~gD~f~~~P--~~-D~~~l  265 (266)
                      .++++|+|||||.|-+  ...+++.+|+.+++++|.. +.++.|+.        .+||+|..+|..+..+  .. |++++
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~  201 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL  201 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence            3779999999998844  3334457899999999995 46655543        2689999999998433  34 99986

>PHA03411 putative methyltransferase; Provisional

Probab=97.69  E-value=9.4e-05  Score=64.58  Aligned_cols=64  Identities=13%  Similarity=0.239  Sum_probs=52.6

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-CCceEEeccCCCCC-CCC-CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-PGVEHVGGDMFVEV-PKG-QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-~ri~~~~gD~f~~~-P~~-D~~~l  265 (266)
                      ..+|+|+|||+|.++..++++.+..+++++|+. ..++.++.+ ++++++.+|+++.. +.. |+++.
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIs  132 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVIS  132 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEE
Confidence            468999999999999999999988899999995 566666553 68999999999843 334 98875

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.64  E-value=7e-05  Score=64.38  Aligned_cols=74  Identities=11%  Similarity=0.172  Sum_probs=56.9

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCCC-------CCceEEeccCCC---CCCCC
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPSC-------PGVEHVGGDMFV---EVPKG  260 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~~-------~ri~~~~gD~f~---~~P~~  260 (266)
                      ++..+.......+|+|+|+|.|..+..++++.++++.+++|+.+ ..+.|+.+       +||+++..|+-+   ..+.+
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~  114 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA  114 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc
Confidence            34443323457999999999999999999999999999999965 55555542       899999999987   23333


Q ss_pred             --CEEEe
Q 046424          261 --QAIFM  265 (266)
Q Consensus       261 --D~~~l  265 (266)
                        |+++.
T Consensus       115 ~fD~Ii~  121 (248)
T COG4123         115 SFDLIIC  121 (248)
T ss_pred             ccCEEEe
Confidence              78775

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.64  E-value=0.00018  Score=62.65  Aligned_cols=72  Identities=15%  Similarity=0.254  Sum_probs=54.5

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC----CCCceEEeccCCC-CCCCCCEE
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS----CPGVEHVGGDMFV-EVPKGQAI  263 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~----~~ri~~~~gD~f~-~~P~~D~~  263 (266)
                      ..+++..+ .....+|+|||||.|.++..++++.  .+++++|+.+ .++.++.    .++|+++.+|+++ ++|..|.+
T Consensus        19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~V   95 (258)
T PRK14896         19 DRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKV   95 (258)
T ss_pred             HHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEE
Confidence            45556555 5566899999999999999999984  4789999963 5554443    3689999999998 66655665


Q ss_pred             E
Q 046424          264 F  264 (266)
Q Consensus       264 ~  264 (266)
                      +
T Consensus        96 v   96 (258)
T PRK14896         96 V   96 (258)
T ss_pred             E
Confidence            4

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.62  E-value=0.00045  Score=60.39  Aligned_cols=66  Identities=17%  Similarity=0.250  Sum_probs=50.2

Q ss_pred             CCCceEEEecCCccH----HHHHHHHHCC-----CCeEEEeech-HHHhhCCCC--------------------------
Q 046424          200 EGLNQLVDVAGGLGA----NLKSIVSKYP-----QLRGINFDLP-HVLKHAPSC--------------------------  243 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~----~~~~l~~~~P-----~l~~~v~Dlp-~vi~~a~~~--------------------------  243 (266)
                      .+..+|+|+|||+|.    +++.+++.+|     +.++++.|+. .+++.|+..                          
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            345799999999997    5667777765     5789999995 477766641                          


Q ss_pred             -------CCceEEeccCCCC-CCCC--CEEEe
Q 046424          244 -------PGVEHVGGDMFVE-VPKG--QAIFM  265 (266)
Q Consensus       244 -------~ri~~~~gD~f~~-~P~~--D~~~l  265 (266)
                             .+|+|..+|+.++ .|.+  |+|+.
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~c  209 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFC  209 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEe
Confidence                   3799999999994 4343  99875

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.60  E-value=0.00016  Score=59.31  Aligned_cols=63  Identities=19%  Similarity=0.284  Sum_probs=49.8

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCCCCCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFVEVPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~~~P~~-D~~~l  265 (266)
                      ...+|+|+|||+|.++..+++..+  +++.+|+ |..++.++.+     -+++++.+|.++..+.. |+++.
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~   88 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILF   88 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEE
Confidence            346899999999999999999987  8999998 5566665542     35888999998854444 88875

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.60  E-value=0.00014  Score=63.76  Aligned_cols=66  Identities=11%  Similarity=0.251  Sum_probs=51.0

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC---CCceEEeccCCC-CCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC---PGVEHVGGDMFV-EVP  258 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~---~ri~~~~gD~f~-~~P  258 (266)
                      ..+++.++ .....+|+|||||+|.++..++++.+  +++++|+. ..++.+++.   ++++++.+|+.+ +++
T Consensus        32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~  102 (272)
T PRK00274         32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLS  102 (272)
T ss_pred             HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHH
Confidence            34555555 55668999999999999999999987  78889885 466655432   689999999987 444

>PRK05785 hypothetical protein; Provisional

Probab=97.60  E-value=0.00015  Score=61.91  Aligned_cols=62  Identities=16%  Similarity=0.211  Sum_probs=50.0

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCC-CCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ...+|+|||||+|.++..+++++ +.+++++|+ |+.++.++.  +..++.+|+.+ |+|.+  |+++.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~--~~~~~~~d~~~lp~~d~sfD~v~~  116 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLV--ADDKVVGSFEALPFRDKSFDVVMS  116 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHh--ccceEEechhhCCCCCCCEEEEEe
Confidence            35799999999999999999988 678999999 458887764  34567888887 77764  98875

>PLN02366 spermidine synthase

Probab=97.58  E-value=0.00011  Score=65.53  Aligned_cols=65  Identities=22%  Similarity=0.268  Sum_probs=51.2

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCC-CeEEEeechH-HHhhCCC----------CCCceEEeccCCC---CCCC-C-CE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDLPH-VLKHAPS----------CPGVEHVGGDMFV---EVPK-G-QA  262 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp~-vi~~a~~----------~~ri~~~~gD~f~---~~P~-~-D~  262 (266)
                      .++++|++||||.|..+..+++. |. .+++++|+.+ |++.+++          .+|++++.+|.++   ..|. . |+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            46799999999999999999865 65 5789999965 7777654          2699999999764   4443 3 99


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      |++
T Consensus       169 Ii~  171 (308)
T PLN02366        169 IIV  171 (308)
T ss_pred             EEE
Confidence            875

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.55  E-value=0.00053  Score=57.81  Aligned_cols=59  Identities=22%  Similarity=0.197  Sum_probs=45.9

Q ss_pred             HHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhhCCCCCCceEEeccCCC
Q 046424          193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPHVLKHAPSCPGVEHVGGDMFV  255 (266)
Q Consensus       193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~  255 (266)
                      .+.+.-++...+|+|||||+|.++..++++. |..+++.+|+.++    ...++|+++.+|+.+
T Consensus        43 ~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~  102 (209)
T PRK11188         43 QQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRD  102 (209)
T ss_pred             HHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCC
Confidence            3334323566799999999999999999987 5578999999763    223679999999988

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=97.54  E-value=0.00044  Score=62.24  Aligned_cols=71  Identities=13%  Similarity=0.100  Sum_probs=51.1

Q ss_pred             HHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHH-Hhh------C-CCCCCceEEeccCCC-CCCCC-CE
Q 046424          193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHV-LKH------A-PSCPGVEHVGGDMFV-EVPKG-QA  262 (266)
Q Consensus       193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~------a-~~~~ri~~~~gD~f~-~~P~~-D~  262 (266)
                      +..++.. ...+|+|||||+|.++..+++..|. +++++|.... +..      . ....+|+++.+|+.+ +.+.. |+
T Consensus       115 ~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~  192 (322)
T PRK15068        115 LPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDT  192 (322)
T ss_pred             HHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCE
Confidence            4444313 3489999999999999999999887 5999997542 221      1 113589999999877 55555 99


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      ++.
T Consensus       193 V~s  195 (322)
T PRK15068        193 VFS  195 (322)
T ss_pred             EEE
Confidence            874

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.54  E-value=0.00019  Score=59.18  Aligned_cols=64  Identities=20%  Similarity=0.348  Sum_probs=50.4

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH--HHhhCCCCCCceEEeccCCC---CCCCC--CEEEeC
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH--VLKHAPSCPGVEHVGGDMFV---EVPKG--QAIFMK  266 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~--vi~~a~~~~ri~~~~gD~f~---~~P~~--D~~~lk  266 (266)
                      +...+|+|+|||.|.++..|.+. -++++.++|+.+  |.+..+  .+++++.+|+-+   .+|..  |.++|+
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~--rGv~Viq~Dld~gL~~f~d~sFD~VIls   82 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA--RGVSVIQGDLDEGLADFPDQSFDYVILS   82 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH--cCCCEEECCHHHhHhhCCCCCccEEehH
Confidence            35699999999999999888775 689999998854  444333  589999999988   37764  998874

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR00477 tehB tellurite resistance protein TehB

Probab=97.53  E-value=0.00035  Score=58.23  Aligned_cols=73  Identities=14%  Similarity=0.073  Sum_probs=51.7

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEEeccCCC-CCCCC-C
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----PGVEHVGGDMFV-EVPKG-Q  261 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gD~f~-~~P~~-D  261 (266)
                      ..+++.++ .....+|+|||||+|..+..++++  ..+++++|+. ..++.++..     -.+++...|+.. +++.. |
T Consensus        20 ~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD   96 (195)
T TIGR00477        20 SAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD   96 (195)
T ss_pred             HHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence            35556655 445689999999999999999986  5689999994 466654421     136777788765 44444 8


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus        97 ~I~~  100 (195)
T TIGR00477        97 FIFS  100 (195)
T ss_pred             EEEE
Confidence            8763

Part of a tellurite-reducing operon tehA and tehB

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.53  E-value=0.0002  Score=62.67  Aligned_cols=67  Identities=21%  Similarity=0.285  Sum_probs=52.8

Q ss_pred             CCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-CCCCC--CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      .....+|||||||+|..+..+++. .|+.+++++|+ |..++.++.      .++++++.+|+.+ ++|.+  |+++.
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~  152 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS  152 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence            456789999999999988877776 46778999998 667777654      2689999999877 66653  88863

>PRK00811 spermidine synthase; Provisional

Probab=97.52  E-value=0.00012  Score=64.70  Aligned_cols=66  Identities=18%  Similarity=0.243  Sum_probs=51.9

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-----------CCCceEEeccCCCC--CCC-C-CEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-----------CPGVEHVGGDMFVE--VPK-G-QAI  263 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-----------~~ri~~~~gD~f~~--~P~-~-D~~  263 (266)
                      .++++|++||||.|..+..+++..+..+++++|+. .|++.+++           .+|++++.+|..+-  .+. . |+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            36789999999999999999976566689999994 57776653           37899999998872  233 3 998


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      ++
T Consensus       155 i~  156 (283)
T PRK00811        155 IV  156 (283)
T ss_pred             EE
Confidence            75

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=97.51  E-value=0.00056  Score=58.65  Aligned_cols=65  Identities=26%  Similarity=0.303  Sum_probs=55.0

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCC------CeEEEeec-hHHHhhCCC---------CCCceEEeccCCC-CCCCC--C
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQ------LRGINFDL-PHVLKHAPS---------CPGVEHVGGDMFV-EVPKG--Q  261 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~------l~~~v~Dl-p~vi~~a~~---------~~ri~~~~gD~f~-~~P~~--D  261 (266)
                      ...++|||+||+|-.+..|++.-+.      -+++|.|+ |+.+..++.         .+|+.++.+|-=+ |+|..  |
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D  179 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD  179 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence            3589999999999999999999888      78999999 556666543         2569999999988 99985  9


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +|.+
T Consensus       180 ~yTi  183 (296)
T KOG1540|consen  180 AYTI  183 (296)
T ss_pred             eEEE
Confidence            9986

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.51  E-value=0.00032  Score=59.49  Aligned_cols=63  Identities=13%  Similarity=0.206  Sum_probs=47.3

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCCC-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPKG-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~~-D~~~l  265 (266)
                      ....+|+|||||+|.++..+++..+  +++++|+ |..++.++..       ++|++..+| ++..+.. |+++.
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~fD~v~~  133 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGD-LESLLGRFDTVVC  133 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC-chhccCCcCEEEE
Confidence            3567999999999999999998865  5999998 4566666541       489999999 4433333 87763

>PRK01581 speE spermidine synthase; Validated

Probab=97.44  E-value=0.00023  Score=64.59  Aligned_cols=66  Identities=17%  Similarity=0.082  Sum_probs=52.7

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-------------CCCceEEeccCCCC---CCCC-C
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-------------CPGVEHVGGDMFVE---VPKG-Q  261 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-------------~~ri~~~~gD~f~~---~P~~-D  261 (266)
                      .++.+||+||||.|..+.++++..|..+++++|+. .|++.++.             .+|++++.+|-++-   .+.. |
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            46789999999999999999986666789999995 57887663             27999999998872   2334 9


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +|++
T Consensus       229 VIIv  232 (374)
T PRK01581        229 VIII  232 (374)
T ss_pred             EEEE
Confidence            8875

>PRK14968 putative methyltransferase; Provisional

Probab=97.42  E-value=0.00037  Score=57.02  Aligned_cols=63  Identities=17%  Similarity=0.270  Sum_probs=49.7

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CC-ceEEeccCCCCCCC-C-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PG-VEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~r-i~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      +..+++|+|||+|..+..++++  ..+++.+|+ |.+++.++.+       .+ ++++.+|++++++. . |+++.
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~   96 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILF   96 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEE
Confidence            5578999999999999999998  578999999 4566665431       23 89999999997665 3 88764

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.42  E-value=0.00046  Score=57.57  Aligned_cols=71  Identities=10%  Similarity=0.101  Sum_probs=53.3

Q ss_pred             HHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCC---CCCC-
Q 046424          194 EIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVE---VPKG-  260 (266)
Q Consensus       194 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~---~P~~-  260 (266)
                      ..++ .....+++|+|||+|.++..+++. .|..+++.+|+ |+.++.+++       .++++++.+|+.+-   .+.. 
T Consensus        34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~  112 (198)
T PRK00377         34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF  112 (198)
T ss_pred             HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence            3344 556689999999999999999886 46789999999 667765543       15789999998762   2233 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |++++
T Consensus       113 D~V~~  117 (198)
T PRK00377        113 DRIFI  117 (198)
T ss_pred             CEEEE
Confidence            88875

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.38  E-value=0.00055  Score=59.38  Aligned_cols=69  Identities=14%  Similarity=0.270  Sum_probs=52.2

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----CCCceEEeccCCC-CCCCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----CPGVEHVGGDMFV-EVPKGQ  261 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~~ri~~~~gD~f~-~~P~~D  261 (266)
                      ..+++..+ ..+..+|+|||||.|.+...++++.+.  ++++|.. ..++.++.    .++++++.+|+.+ +++..|
T Consensus        19 ~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d   93 (253)
T TIGR00755        19 QKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP   93 (253)
T ss_pred             HHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence            45566665 666789999999999999999999975  8888884 35544432    3689999999998 555333

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PHA03412 putative methyltransferase; Provisional

Probab=97.36  E-value=0.0005  Score=58.81  Aligned_cols=64  Identities=17%  Similarity=0.226  Sum_probs=51.4

Q ss_pred             CceEEEecCCccHHHHHHHHHC---CCCeEEEeechH-HHhhCCCC-CCceEEeccCCC-CCCCC-CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKY---PQLRGINFDLPH-VLKHAPSC-PGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~---P~l~~~v~Dlp~-vi~~a~~~-~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      ..+|||+|||+|.++..++++.   ++.+++.+|+.+ .++.++.+ ++++++.+|++. +.+.. |+|+.
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIs  120 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAIS  120 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEE
Confidence            5799999999999999999875   467899999964 66666654 789999999987 44434 98874

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.35  E-value=0.00061  Score=59.71  Aligned_cols=64  Identities=22%  Similarity=0.142  Sum_probs=51.1

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC-------CCCceEEeccCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS-------CPGVEHVGGDMFV  255 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~-------~~ri~~~~gD~f~  255 (266)
                      +.+++.+. ++...+|||||||-|.+++-.+++| +.+++++++.+ ..+.+++       ..+|++...|+-+
T Consensus        62 ~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd  133 (283)
T COG2230          62 DLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD  133 (283)
T ss_pred             HHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc
Confidence            45677777 8889999999999999999999999 99999999953 4444332       1478888877765

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.33  E-value=0.00096  Score=55.08  Aligned_cols=56  Identities=20%  Similarity=0.236  Sum_probs=45.1

Q ss_pred             ccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhhCCCCCCceEEeccCCC
Q 046424          196 YKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPHVLKHAPSCPGVEHVGGDMFV  255 (266)
Q Consensus       196 ~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~  255 (266)
                      +.......+|+|||||+|.++..+++++ +..+++++|+.+..    ..++++++.+|+.+
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~   83 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTD   83 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCC
Confidence            3334567899999999999999999887 67789999997643    23678999999876

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=97.32  E-value=0.00058  Score=60.36  Aligned_cols=72  Identities=15%  Similarity=0.133  Sum_probs=51.8

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEEeccCCC-CCCCC-CE
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----PGVEHVGGDMFV-EVPKG-QA  262 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gD~f~-~~P~~-D~  262 (266)
                      .++..++ .....++||||||+|..+..+++.  ..+++++|.. ..++.++..     -++++..+|+.. +++.. |+
T Consensus       111 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~  187 (287)
T PRK12335        111 EVLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDF  187 (287)
T ss_pred             HHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccE
Confidence            3444444 334569999999999999999886  5789999995 466654431     368888899877 35544 98


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      ++.
T Consensus       188 I~~  190 (287)
T PRK12335        188 ILS  190 (287)
T ss_pred             EEE
Confidence            864

>PRK03612 spermidine synthase; Provisional

Probab=97.32  E-value=0.00039  Score=66.57  Aligned_cols=65  Identities=25%  Similarity=0.424  Sum_probs=53.1

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC-------------CCCceEEeccCCC---CCCCC-
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDL-PHVLKHAPS-------------CPGVEHVGGDMFV---EVPKG-  260 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~-------------~~ri~~~~gD~f~---~~P~~-  260 (266)
                      ++.++|+|||||.|..+.++++ +|. .+++++|+ |++++.+++             .+|++++.+|.++   ..+.. 
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            3678999999999999999996 566 78999999 678888765             1689999999887   23445 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |+|++
T Consensus       375 DvIi~  379 (521)
T PRK03612        375 DVIIV  379 (521)
T ss_pred             CEEEE
Confidence            99875

>PLN02672 methionine S-methyltransferase

Probab=97.31  E-value=0.00046  Score=70.67  Aligned_cols=63  Identities=17%  Similarity=0.136  Sum_probs=50.7

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----------------------CCCceEEeccCCCCCC
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----------------------CPGVEHVGGDMFVEVP  258 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----------------------~~ri~~~~gD~f~~~P  258 (266)
                      ..+|+|||||+|..++.+++++|+.+++.+|+. ..++.++.                      .+||+++.+|+++..+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            368999999999999999999999999999995 46655421                      1489999999999664


Q ss_pred             C---C-CEEE
Q 046424          259 K---G-QAIF  264 (266)
Q Consensus       259 ~---~-D~~~  264 (266)
                      .   . |+++
T Consensus       199 ~~~~~fDlIV  208 (1082)
T PLN02672        199 DNNIELDRIV  208 (1082)
T ss_pred             ccCCceEEEE
Confidence            3   2 7764

>PRK14967 putative methyltransferase; Provisional

Probab=97.29  E-value=0.00057  Score=58.07  Aligned_cols=66  Identities=15%  Similarity=0.110  Sum_probs=49.5

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEEeccCCCCCCC-C-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      .....+|+|+|||+|.++..+++. +..+++++|+. ..++.++.+     -+++++.+|+++.++. . |++++
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~  107 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVS  107 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEE
Confidence            445579999999999999998876 33488999995 456544432     3588899999886664 3 98875

>PRK04266 fibrillarin; Provisional

Probab=97.28  E-value=0.0013  Score=56.14  Aligned_cols=68  Identities=7%  Similarity=0.096  Sum_probs=51.8

Q ss_pred             ccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHh----hCCCCCCceEEeccCCCC-----CCCC-CEEE
Q 046424          196 YKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLK----HAPSCPGVEHVGGDMFVE-----VPKG-QAIF  264 (266)
Q Consensus       196 ~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~----~a~~~~ri~~~~gD~f~~-----~P~~-D~~~  264 (266)
                      ++ .+...+|+|+|||+|.++..+++..+.-+++.+|+.+ .++    .++..++|.++.+|...+     ++.. |+++
T Consensus        68 l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~  146 (226)
T PRK04266         68 FP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY  146 (226)
T ss_pred             CC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence            44 5566899999999999999999999866789999953 333    444446799999998753     3344 8876

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.27  E-value=0.0014  Score=55.22  Aligned_cols=70  Identities=14%  Similarity=0.198  Sum_probs=51.0

Q ss_pred             HHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCCCCCC-C--CE
Q 046424          193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFVEVPK-G--QA  262 (266)
Q Consensus       193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~P~-~--D~  262 (266)
                      +..++ ..+..+|+|||||+|.++..+++...  +++.+|. |..++.+++      ...|+++.+|+++.+|. +  |+
T Consensus        71 ~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  147 (212)
T PRK00312         71 TELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDR  147 (212)
T ss_pred             HHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCE
Confidence            44444 55678999999999999887777754  6888887 455555543      24699999999886553 3  98


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      +++
T Consensus       148 I~~  150 (212)
T PRK00312        148 ILV  150 (212)
T ss_pred             EEE
Confidence            875

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.25  E-value=0.00095  Score=63.14  Aligned_cols=73  Identities=22%  Similarity=0.327  Sum_probs=53.6

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----CCCceEEeccCCC---CCCCC-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----CPGVEHVGGDMFV---EVPKG-  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~~ri~~~~gD~f~---~~P~~-  260 (266)
                      +.+++.++ .....+++|||||+|.++..+++.+.  +++++|.. ..++.+..    .++++++.+|+.+   ++|.+ 
T Consensus        27 ~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~  103 (475)
T PLN02336         27 PEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGS  103 (475)
T ss_pred             hHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCC
Confidence            45566655 44557999999999999999999864  68999984 45554332    2679999999964   45553 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |+++.
T Consensus       104 fD~I~~  109 (475)
T PLN02336        104 VDLIFS  109 (475)
T ss_pred             EEEEeh
Confidence             98874

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=97.25  E-value=0.00038  Score=62.55  Aligned_cols=62  Identities=13%  Similarity=0.017  Sum_probs=47.2

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCCC-CCCC-C-CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFV-EVPK-G-QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~-~~P~-~-D~~~l  265 (266)
                      ..+|||||||.|.++..+++  ++.+++++|.. +.++.++.+       .+|+++.+|+-+ +.+. . |+++.
T Consensus       132 g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~  204 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLS  204 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEE
Confidence            46899999999999998876  47789999995 466665531       479999999765 4443 3 98874

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.22  E-value=0.00034  Score=57.91  Aligned_cols=69  Identities=20%  Similarity=0.328  Sum_probs=51.5

Q ss_pred             HccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCCCCCCC--CEEEeC
Q 046424          195 IYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFVEVPKG--QAIFMK  266 (266)
Q Consensus       195 ~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~~~P~~--D~~~lk  266 (266)
                      .++ -....++++||||.|.+...|+.+.-  +.+++|. |..++.++.    .++|+++..|+-+.+|.+  |+|+++
T Consensus        38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S  113 (201)
T PF05401_consen   38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS  113 (201)
T ss_dssp             HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred             hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence            455 45678999999999999999999973  5799999 668887764    388999999998888876  999874

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.20  E-value=0.00064  Score=56.75  Aligned_cols=54  Identities=17%  Similarity=0.271  Sum_probs=41.7

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCC------CCCCceEEeccCCC
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAP------SCPGVEHVGGDMFV  255 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~------~~~ri~~~~gD~f~  255 (266)
                      ...+||||||.|.++.++++++|+..++++|.- ..+..+.      ..+.+.++.+|...
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~   78 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE   78 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence            359999999999999999999999999999994 3343332      13789999988776

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.20  E-value=0.0011  Score=55.02  Aligned_cols=63  Identities=19%  Similarity=0.338  Sum_probs=47.2

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCCCCceEEeccCCC---CCCC-C-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSCPGVEHVGGDMFV---EVPK-G-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~~ri~~~~gD~f~---~~P~-~-D~~~l  265 (266)
                      ...+|+|||||+|.++..+++. ...+++++|+. +.++.++. .+++++.+|+.+   +++. . |++++
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~   81 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVIL   81 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEE
Confidence            4579999999999999888765 45678899985 45555543 468899999865   2444 3 99875

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.18  E-value=0.0013  Score=58.42  Aligned_cols=72  Identities=14%  Similarity=0.262  Sum_probs=53.1

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-------CCCceEEeccCCC-CCCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-------CPGVEHVGGDMFV-EVPKG  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-------~~ri~~~~gD~f~-~~P~~  260 (266)
                      ..+++..+ .....+|+|||||.|.+...++++..  +++++|+. ..++.+++       .++++++.+|+.+ +.+.-
T Consensus        26 ~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~  102 (294)
T PTZ00338         26 DKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYF  102 (294)
T ss_pred             HHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccccc
Confidence            35555555 55668999999999999999999854  68889985 35554432       3689999999998 55544


Q ss_pred             CEEE
Q 046424          261 QAIF  264 (266)
Q Consensus       261 D~~~  264 (266)
                      |+++
T Consensus       103 d~Vv  106 (294)
T PTZ00338        103 DVCV  106 (294)
T ss_pred             CEEE
Confidence            6654

>PRK04148 hypothetical protein; Provisional

Probab=97.17  E-value=0.0016  Score=50.82  Aligned_cols=69  Identities=19%  Similarity=0.250  Sum_probs=49.6

Q ss_pred             HHHHccCCCCCceEEEecCCccH-HHHHHHHHCCCCeEEEeech-HHHhhCCCCCCceEEeccCCCCCCC---C-CEEE
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGA-NLKSIVSKYPQLRGINFDLP-HVLKHAPSCPGVEHVGGDMFVEVPK---G-QAIF  264 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~-~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~~ri~~~~gD~f~~~P~---~-D~~~  264 (266)
                      +.+.++ -.+..+++|||+|.|. .+..|.+.  +..++++|.. ..++.++. ..++++.+|+|++-+.   + |+++
T Consensus         8 l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liy   82 (134)
T PRK04148          8 IAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIY   82 (134)
T ss_pred             HHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEE
Confidence            344444 2234789999999996 77777765  5689999984 56766655 4689999999996443   3 7664

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.14  E-value=0.0011  Score=58.78  Aligned_cols=75  Identities=20%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC----CCceEEeccCCC--C-CCC-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC----PGVEHVGGDMFV--E-VPK-  259 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~----~ri~~~~gD~f~--~-~P~-  259 (266)
                      ..+++.+. ......+||++||.|.++..+++..| +.+++++|. |+.++.+++.    +||+++.+||-+  . .+. 
T Consensus         9 ~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~   87 (296)
T PRK00050          9 DEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEG   87 (296)
T ss_pred             HHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcC
Confidence            45666654 34457999999999999999999996 789999999 4577766542    589999999986  1 332 


Q ss_pred             --C-CEEEe
Q 046424          260 --G-QAIFM  265 (266)
Q Consensus       260 --~-D~~~l  265 (266)
                        . |.+++
T Consensus        88 ~~~vDgIl~   96 (296)
T PRK00050         88 LGKVDGILL   96 (296)
T ss_pred             CCccCEEEE
Confidence              3 77765

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.13  E-value=0.00058  Score=59.98  Aligned_cols=71  Identities=17%  Similarity=0.123  Sum_probs=46.1

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC-------CCCceEEeccCCCCCCCC-C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS-------CPGVEHVGGDMFVEVPKG-Q  261 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~-------~~ri~~~~gD~f~~~P~~-D  261 (266)
                      .+++..+ .+...+|||||||-|.+++.+++++ +++++++.+.+ ..+.+++       .++|++.-.|+.+ ++.. |
T Consensus        53 ~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~~~fD  129 (273)
T PF02353_consen   53 LLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LPGKFD  129 (273)
T ss_dssp             HHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----S-S
T ss_pred             HHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cCCCCC
Confidence            4566665 7778999999999999999999999 89999999953 3333321       2689999999865 4434 6


Q ss_pred             EEE
Q 046424          262 AIF  264 (266)
Q Consensus       262 ~~~  264 (266)
                      .|+
T Consensus       130 ~Iv  132 (273)
T PF02353_consen  130 RIV  132 (273)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.13  E-value=0.0012  Score=57.12  Aligned_cols=60  Identities=23%  Similarity=0.295  Sum_probs=46.6

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC-------CCCceEE----eccCCCCCC
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS-------CPGVEHV----GGDMFVEVP  258 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~-------~~ri~~~----~gD~f~~~P  258 (266)
                      +.+...++|+|||+|..+..++.-.|..++|.+|..+ .+..|.+       .+||.++    ..|-+.+-|
T Consensus       146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~  217 (328)
T KOG2904|consen  146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHP  217 (328)
T ss_pred             hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccc
Confidence            4456799999999999999999999999999999975 4444433       2788777    556666443

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.12  E-value=0.0012  Score=47.31  Aligned_cols=61  Identities=25%  Similarity=0.265  Sum_probs=47.4

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCC------CCCCceEEeccCCCCC---CCC-CEEEe
Q 046424          204 QLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAP------SCPGVEHVGGDMFVEV---PKG-QAIFM  265 (266)
Q Consensus       204 ~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~------~~~ri~~~~gD~f~~~---P~~-D~~~l  265 (266)
                      +++|||||.|.++..+++ .+..+.+++|+.+ .+..++      ...+++++.+|+.+..   +.. |++++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~   72 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIIS   72 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEE
Confidence            589999999999999998 7888999999864 444333      1368999999999843   334 88875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR00452 methyltransferase, putative

Probab=97.09  E-value=0.0028  Score=56.82  Aligned_cols=72  Identities=11%  Similarity=0.022  Sum_probs=48.6

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhh---C----CCCCCceEEeccCCC-CCCCC-C
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKH---A----PSCPGVEHVGGDMFV-EVPKG-Q  261 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~---a----~~~~ri~~~~gD~f~-~~P~~-D  261 (266)
                      ++..+. .....+|+|||||+|.++..++...+. +++++|... .+..   +    ....++.+..+|+-+ +.+.. |
T Consensus       113 ~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD  190 (314)
T TIGR00452       113 VLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFD  190 (314)
T ss_pred             HHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcC
Confidence            444443 224589999999999999999998875 789999754 3221   1    123678888887654 32234 8


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus       191 ~V~s  194 (314)
T TIGR00452       191 TVFS  194 (314)
T ss_pred             EEEE
Confidence            8864

Known examples to date are restricted to the proteobacteria.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.08  E-value=0.0013  Score=53.98  Aligned_cols=64  Identities=22%  Similarity=0.179  Sum_probs=49.7

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCCCCCCCCEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFVEVPKGQAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~~~P~~D~~~l  265 (266)
                      ..++|+|.|||+|.++++.+-..|. +++.+|+ |+.++.++.+     .+|.|+..|.-+--..-|+++|
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvim  114 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIM  114 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEE
Confidence            3488999999999999999888775 7888998 5677776653     5799999998763333366665

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.04  E-value=0.0023  Score=57.47  Aligned_cols=73  Identities=19%  Similarity=0.294  Sum_probs=53.4

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeech-HHHhhCCC------CCCceEEeccCCCCCCC--C-
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDLP-HVLKHAPS------CPGVEHVGGDMFVEVPK--G-  260 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~~~P~--~-  260 (266)
                      +++..+ .+...+|+|||||+|.++..+++..+. -+++.+|.. +.++.+++      .++++++.+|..+..+.  . 
T Consensus        72 ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~f  150 (322)
T PRK13943         72 FMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPY  150 (322)
T ss_pred             HHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCc
Confidence            344444 556689999999999999999998874 468889984 56655543      25799999998774432  2 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |++++
T Consensus       151 D~Ii~  155 (322)
T PRK13943        151 DVIFV  155 (322)
T ss_pred             cEEEE
Confidence            88875

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.03  E-value=0.001  Score=58.54  Aligned_cols=66  Identities=21%  Similarity=0.350  Sum_probs=56.0

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCC---CCCCC-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFV---EVPKG-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~---~~P~~-D~~~  264 (266)
                      +++++|+=||||.|..++++++..|.-+++++|+ |.||+.+++          .+|++.+-+|=++   ..+.. |+|+
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi  154 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII  154 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence            4568999999999999999999999889999999 568888764          2899999999887   35545 9987


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       155 ~  155 (282)
T COG0421         155 V  155 (282)
T ss_pred             E
Confidence            5

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.03  E-value=0.00073  Score=59.92  Aligned_cols=82  Identities=17%  Similarity=0.226  Sum_probs=52.3

Q ss_pred             HHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCce
Q 046424          176 LFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVE  247 (266)
Q Consensus       176 ~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~  247 (266)
                      .|...-+..++...+. ++.+. . ...+|+|||||+|.+++..++.... +++.+|+. ..++.++++       +++.
T Consensus       139 AFGTG~H~TT~lcl~~-l~~~~-~-~g~~vLDvG~GSGILaiaA~klGA~-~v~a~DiDp~Av~~a~~N~~~N~~~~~~~  214 (295)
T PF06325_consen  139 AFGTGHHPTTRLCLEL-LEKYV-K-PGKRVLDVGCGSGILAIAAAKLGAK-KVVAIDIDPLAVEAARENAELNGVEDRIE  214 (295)
T ss_dssp             SS-SSHCHHHHHHHHH-HHHHS-S-TTSEEEEES-TTSHHHHHHHHTTBS-EEEEEESSCHHHHHHHHHHHHTT-TTCEE
T ss_pred             cccCCCCHHHHHHHHH-HHHhc-c-CCCEEEEeCCcHHHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHHcCCCeeEE
Confidence            5666666666666544 44443 3 4579999999999999999998554 78999994 456665542       5665


Q ss_pred             EEeccCCCCCCCC--CEEE
Q 046424          248 HVGGDMFVEVPKG--QAIF  264 (266)
Q Consensus       248 ~~~gD~f~~~P~~--D~~~  264 (266)
                      +.   ...+.+.+  |+++
T Consensus       215 v~---~~~~~~~~~~dlvv  230 (295)
T PF06325_consen  215 VS---LSEDLVEGKFDLVV  230 (295)
T ss_dssp             ES---CTSCTCCS-EEEEE
T ss_pred             EE---EecccccccCCEEE
Confidence            53   12233333  7775

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.01  E-value=0.0028  Score=53.61  Aligned_cols=54  Identities=15%  Similarity=0.192  Sum_probs=43.2

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCC------------------CCCCceEEeccCCC
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAP------------------SCPGVEHVGGDMFV  255 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~------------------~~~ri~~~~gD~f~  255 (266)
                      ....+++|+|||.|..+.-|+++  ..++|.+|+.+ .++.+.                  ...+|+++.+|+|+
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~  105 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA  105 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC
Confidence            34579999999999999999986  77899999954 455421                  12479999999998

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.00  E-value=0.0012  Score=58.41  Aligned_cols=86  Identities=15%  Similarity=0.146  Sum_probs=53.3

Q ss_pred             HHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCCC-------CCce
Q 046424          176 LFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPSC-------PGVE  247 (266)
Q Consensus       176 ~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~~-------~ri~  247 (266)
                      .|..+.+..+.... .+++.+. . ...+|+|||||+|.++..+++. +..+++.+|+.+ .++.++.+       .++.
T Consensus       137 aFgtG~h~tt~l~l-~~l~~~~-~-~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~  212 (288)
T TIGR00406       137 AFGTGTHPTTSLCL-EWLEDLD-L-KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQ  212 (288)
T ss_pred             cccCCCCHHHHHHH-HHHHhhc-C-CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceE
Confidence            35444444444332 2334443 2 4589999999999999888765 445899999964 55555432       4677


Q ss_pred             EEeccCCCCCCCC-CEEEe
Q 046424          248 HVGGDMFVEVPKG-QAIFM  265 (266)
Q Consensus       248 ~~~gD~f~~~P~~-D~~~l  265 (266)
                      +..+|.....+.. |+++.
T Consensus       213 ~~~~~~~~~~~~~fDlVva  231 (288)
T TIGR00406       213 VKLIYLEQPIEGKADVIVA  231 (288)
T ss_pred             EEecccccccCCCceEEEE
Confidence            7766643333334 88864

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=97.00  E-value=0.00027  Score=45.86  Aligned_cols=46  Identities=28%  Similarity=0.403  Sum_probs=40.0

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +.|+++|.+.+ .++|+.|||+++|+    +..-+.|+|..|...|+++++
T Consensus         6 l~iL~~l~~~~-~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~d   51 (52)
T PF09339_consen    6 LRILEALAESG-GPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVERD   51 (52)
T ss_dssp             HHHHHCHHCTB-SCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEC
T ss_pred             HHHHHHHHcCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeecC
Confidence            46788888875 37899999999999    999999999999999999975

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=96.99  E-value=0.0023  Score=58.95  Aligned_cols=71  Identities=15%  Similarity=0.102  Sum_probs=51.3

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---CCceEEeccCCCCCCCC-CEEE
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC---PGVEHVGGDMFVEVPKG-QAIF  264 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---~ri~~~~gD~f~~~P~~-D~~~  264 (266)
                      .+++.+. .....+|||||||.|.++..+++.+ +.+++++|+ |..++.+++.   ..+++...|+.+ .+.. |+++
T Consensus       158 ~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~-l~~~fD~Iv  233 (383)
T PRK11705        158 LICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRD-LNGQFDRIV  233 (383)
T ss_pred             HHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhh-cCCCCCEEE
Confidence            3455555 5567899999999999999998876 679999998 4566665532   247888888754 3333 7765

>PLN02823 spermine synthase

Probab=96.98  E-value=0.0012  Score=59.71  Aligned_cols=66  Identities=14%  Similarity=0.166  Sum_probs=53.4

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCCC---CCCC-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFVE---VPKG-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~~---~P~~-D~~~  264 (266)
                      .++++|+-||||.|..+.++++..+..+++++|+ |.|++.+++          .+|++++.+|-++-   .+.. |+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            3678999999999999999998777778999999 558887764          27999999998872   2334 8887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       182 ~  182 (336)
T PLN02823        182 G  182 (336)
T ss_pred             e
Confidence            5

>TIGR03438 probable methyltransferase

Probab=96.94  E-value=0.0014  Score=58.41  Aligned_cols=62  Identities=19%  Similarity=0.283  Sum_probs=47.0

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeechH-HHhhCCC-----CC--CceEEeccCCC
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLPH-VLKHAPS-----CP--GVEHVGGDMFV  255 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp~-vi~~a~~-----~~--ri~~~~gD~f~  255 (266)
                      .+++.++   ...+|+|+|||+|.....|+++.+ ..+++.+|+.+ .++.+..     .+  +|+++.+||++
T Consensus        56 ~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~  126 (301)
T TIGR03438        56 EIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ  126 (301)
T ss_pred             HHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence            4444443   457899999999999999999998 68899999975 4444432     23  46678999987

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00417 speE spermidine synthase

Probab=96.93  E-value=0.0013  Score=57.58  Aligned_cols=66  Identities=17%  Similarity=0.268  Sum_probs=50.7

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----------CCCceEEeccCCC--C-CCCC-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----------CPGVEHVGGDMFV--E-VPKG-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----------~~ri~~~~gD~f~--~-~P~~-D~~~  264 (266)
                      +++.+|++||||.|..+..+++..+..+++++|+. .+++.+++          .+|++++.+|.++  . .+.. |+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            35679999999999999999987767789999995 46665543          2689999999876  2 2334 8887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       151 ~  151 (270)
T TIGR00417       151 V  151 (270)
T ss_pred             E
Confidence            5

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=96.91  E-value=0.0021  Score=52.48  Aligned_cols=64  Identities=13%  Similarity=0.127  Sum_probs=45.2

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------C-CCceEEeccCCCC--CCCC-CEEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------C-PGVEHVGGDMFVE--VPKG-QAIF  264 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~-~ri~~~~gD~f~~--~P~~-D~~~  264 (266)
                      ...+|||+|||+|+++.+|++.--.-+-+++|-. ..++.|+.      . +.|+|+..|+++|  .+.. |+++
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvl  141 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVL  141 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEe
Confidence            3459999999999999999987433334666764 34444432      2 3499999999994  3444 8776

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=96.89  E-value=0.0019  Score=44.33  Aligned_cols=61  Identities=18%  Similarity=0.160  Sum_probs=49.3

Q ss_pred             HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      ..+-.|+..|.+.|+.++|+.|||+++|+    +...+.|+|.-|...|+|+....    .  .+.|.++.
T Consensus         6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~~----~--~~~W~i~~   66 (68)
T smart00550        6 SLEEKILEFLENSGDETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQGG----T--PPLWKLTD   66 (68)
T ss_pred             HHHHHHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCC----C--CCceEeec
Confidence            45667899999887213999999999999    99999999999999999997621    1  46788764

Helix-turn-helix-containing domain. Also known as Zab.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=96.88  E-value=0.0017  Score=54.41  Aligned_cols=64  Identities=14%  Similarity=0.137  Sum_probs=47.6

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC------CCceEEeccCCCCCC--C-C-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFVEVP--K-G-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~~~P--~-~-D~~~l  265 (266)
                      ...+++|+|||+|.++..++.+.. .+++.+|.. +.++.++.+      .+++++.+|+++.++  . . |++++
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~  127 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFV  127 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEE
Confidence            346999999999999998777664 588999984 455554432      579999999987332  2 2 88876

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=96.87  E-value=0.001  Score=58.86  Aligned_cols=64  Identities=19%  Similarity=0.245  Sum_probs=45.7

Q ss_pred             HHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC
Q 046424          176 LFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC  243 (266)
Q Consensus       176 ~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~  243 (266)
                      .|-.+-+..+.+.. .+++.+.  .+..+++|||||+|.++++.++.-.. +++++|+. ..++.++++
T Consensus       140 AFGTG~HpTT~lcL-~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~-~v~g~DiDp~AV~aa~eN  204 (300)
T COG2264         140 AFGTGTHPTTSLCL-EALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAK-KVVGVDIDPQAVEAAREN  204 (300)
T ss_pred             ccCCCCChhHHHHH-HHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCc-eEEEecCCHHHHHHHHHH
Confidence            56555555555554 3455554  47799999999999999999887653 68999995 466666653

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=96.87  E-value=0.0027  Score=54.47  Aligned_cols=67  Identities=10%  Similarity=0.132  Sum_probs=51.9

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCCC-------CCceEEeccCCCCCC--------CC-
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFVEVP--------KG-  260 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~~~P--------~~-  260 (266)
                      ..+.++++|||+|+|..+..+++..| +.+++.+|.. +.++.|+++       ++|+++.||..+-+|        .. 
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            34689999999999999999998865 7889999995 455555542       689999999987321        23 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |++++
T Consensus       146 D~Vfi  150 (234)
T PLN02781        146 DFAFV  150 (234)
T ss_pred             CEEEE
Confidence            88875

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.86  E-value=0.003  Score=56.27  Aligned_cols=73  Identities=18%  Similarity=0.219  Sum_probs=54.3

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEeccCCC-CCCCC-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGDMFV-EVPKG-  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~P~~-  260 (266)
                      +++++.-.+|++ +.|||||+|+|.++.-.+.+-. -++..++-.++.+.|+.       .+||++++|-.=+ ++|+. 
T Consensus       167 ~Ail~N~sDF~~-kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~  244 (517)
T KOG1500|consen  167 RAILENHSDFQD-KIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKV  244 (517)
T ss_pred             HHHHhcccccCC-cEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhc
Confidence            455554333644 8999999999998876666543 35777887777666553       2899999999988 89987 


Q ss_pred             CEEE
Q 046424          261 QAIF  264 (266)
Q Consensus       261 D~~~  264 (266)
                      |+++
T Consensus       245 DviI  248 (517)
T KOG1500|consen  245 DVII  248 (517)
T ss_pred             cEEE
Confidence            9875

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.85  E-value=0.0025  Score=59.92  Aligned_cols=72  Identities=15%  Similarity=0.168  Sum_probs=54.3

Q ss_pred             HHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCC---CCCC-
Q 046424          193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVE---VPKG-  260 (266)
Q Consensus       193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~---~P~~-  260 (266)
                      ...++ .....+|+|+|||+|..+..+++.. |+.+++.+|+ +..++.++.+      +.|+++.+|+.+.   ++.. 
T Consensus       243 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~f  321 (444)
T PRK14902        243 APALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKF  321 (444)
T ss_pred             HHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccC
Confidence            34444 4456899999999999999999986 7789999999 5566655431      4589999999762   4444 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |++++
T Consensus       322 D~Vl~  326 (444)
T PRK14902        322 DKILV  326 (444)
T ss_pred             CEEEE
Confidence            98875

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=96.81  E-value=0.0018  Score=46.67  Aligned_cols=59  Identities=22%  Similarity=0.333  Sum_probs=48.5

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchh
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPV  111 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~  111 (266)
                      .-+.|++.|...+ +++|+.|||+.+|+    +...+.|.|..|...|++....   .    ++.|++++.
T Consensus         6 r~~~Il~~l~~~~-~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~~---~----~~~y~l~~~   64 (91)
T smart00346        6 RGLAVLRALAEEP-GGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQDG---Q----NGRYRLGPK   64 (91)
T ss_pred             HHHHHHHHHHhCC-CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeecC---C----CCceeecHH
Confidence            3456888888762 28999999999999    9999999999999999999752   1    567888763

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=96.78  E-value=0.0024  Score=57.27  Aligned_cols=62  Identities=10%  Similarity=0.070  Sum_probs=47.8

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC------CCceEEeccCCCC---CCCC-CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFVE---VPKG-QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~~---~P~~-D~~~l  265 (266)
                      ..+|+|+|||+|.++..+++.  ..+++.+|.. +.++.++.+      ++++++.+|+.+-   .... |++++
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~  246 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLV  246 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence            489999999999999999984  4689999994 566665532      5799999999762   2223 88875

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=96.78  E-value=0.0032  Score=59.17  Aligned_cols=71  Identities=13%  Similarity=0.171  Sum_probs=51.8

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC------CCceEEeccCCCCC-----CC
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFVEV-----PK  259 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~~~-----P~  259 (266)
                      +++.+. .....+|+|+|||+|.++..+++..  .+++.+|.. +.++.++.+      ++++++.+|+.+.+     +.
T Consensus       289 vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~  365 (443)
T PRK13168        289 ALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWAL  365 (443)
T ss_pred             HHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhc
Confidence            334333 3345799999999999999999886  578999995 466665542      57999999987532     22


Q ss_pred             -C-CEEEe
Q 046424          260 -G-QAIFM  265 (266)
Q Consensus       260 -~-D~~~l  265 (266)
                       . |++++
T Consensus       366 ~~fD~Vi~  373 (443)
T PRK13168        366 GGFDKVLL  373 (443)
T ss_pred             CCCCEEEE
Confidence             2 88875

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=96.77  E-value=0.0041  Score=51.65  Aligned_cols=72  Identities=18%  Similarity=0.220  Sum_probs=49.9

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC-----CCCceEEeccCCC-CCCCC-C
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS-----CPGVEHVGGDMFV-EVPKG-Q  261 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~-----~~ri~~~~gD~f~-~~P~~-D  261 (266)
                      ..+++.++ .-...++||+|||.|..+.-|+++  +..++.+|..+ .++.++.     .-.|+....|+.+ ++|.. |
T Consensus        20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD   96 (192)
T PF03848_consen   20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD   96 (192)
T ss_dssp             HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred             HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence            34666666 446789999999999999999999  66799999964 3443321     1238899999988 66666 8


Q ss_pred             EEE
Q 046424          262 AIF  264 (266)
Q Consensus       262 ~~~  264 (266)
                      +|+
T Consensus        97 ~I~   99 (192)
T PF03848_consen   97 FIV   99 (192)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PTZ00146 fibrillarin; Provisional

Probab=96.73  E-value=0.0065  Score=53.68  Aligned_cols=67  Identities=10%  Similarity=0.093  Sum_probs=51.2

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeechH-----HHhhCCCCCCceEEeccCCCCC----C-CC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLPH-----VLKHAPSCPGVEHVGGDMFVEV----P-KG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp~-----vi~~a~~~~ri~~~~gD~f~~~----P-~~-D~~~l  265 (266)
                      ++...+|||+|||+|.++..+++... .=+++.+|+.+     .++.++..++|.++.+|...+.    + .. |++++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~  208 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA  208 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence            45668999999999999999999863 45789999864     4555555578999999987642    2 23 98875

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=96.67  E-value=0.011  Score=49.43  Aligned_cols=108  Identities=13%  Similarity=0.161  Sum_probs=57.5

Q ss_pred             hhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHHHHH----HHhcchhhHHHHHHHccCCCCCceEEEecCCccH
Q 046424          139 SWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQS----MHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGA  214 (266)
Q Consensus       139 ~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f~~~----m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~  214 (266)
                      -++.|.|.+-+..        +..-++.++++|+.-..||++    +..|...+...+++.+..-++...|.|.|||.+.
T Consensus        14 rFR~lNE~LYT~~--------s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~   85 (219)
T PF05148_consen   14 RFRWLNEQLYTTS--------SEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAK   85 (219)
T ss_dssp             HHHHHHHHHHHS---------HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-H
T ss_pred             chHHHHHhHhcCC--------HHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHH
Confidence            4455666664433        223344456677666555544    4444445556666666533456799999999999


Q ss_pred             HHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEEeccCCC-CCCCC--CEEEe
Q 046424          215 NLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       215 ~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      .+..+.+   ..++.-+||-..      +++  +.+.||-. |++.+  |++++
T Consensus        86 la~~~~~---~~~V~SfDLva~------n~~--Vtacdia~vPL~~~svDv~Vf  128 (219)
T PF05148_consen   86 LAKAVPN---KHKVHSFDLVAP------NPR--VTACDIANVPLEDESVDVAVF  128 (219)
T ss_dssp             HHHH--S------EEEEESS-S------STT--EEES-TTS-S--TT-EEEEEE
T ss_pred             HHHhccc---CceEEEeeccCC------CCC--EEEecCccCcCCCCceeEEEE
Confidence            9966542   346888898332      234  56799976 77775  88775

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=96.65  E-value=0.0058  Score=55.13  Aligned_cols=65  Identities=17%  Similarity=0.065  Sum_probs=49.3

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC-CCCC-C-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV-EVPK-G-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~-~~P~-~-D~~~l  265 (266)
                      ++...+|+|+|||+|.++.+++..  ..++++.|+ |..+..++.+      +.++++.+|+.+ +++. . |++++
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~  254 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIAT  254 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEE
Confidence            566789999999999999886654  678899999 4566654432      448899999998 6654 3 88875

This family is found exclusively in the Archaea.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=96.63  E-value=0.0041  Score=55.78  Aligned_cols=61  Identities=10%  Similarity=0.008  Sum_probs=45.7

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCCC-----------CCceEEeccCCCCCCCC-CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPSC-----------PGVEHVGGDMFVEVPKG-QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~~-----------~ri~~~~gD~f~~~P~~-D~~~l  265 (266)
                      ..+|||||||+|.++..++++  ..+++++|+.+ .++.++.+           .++++..+|+.+ ++.. |+++.
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~  218 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTC  218 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEE
Confidence            479999999999999999986  56899999965 66554431           357888888753 3344 87763

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=96.63  E-value=0.0053  Score=57.68  Aligned_cols=95  Identities=14%  Similarity=0.164  Sum_probs=58.2

Q ss_pred             chhccccChhHHHHHHHHHHhcchhhHHHHHHHccCCC---CCceEEEecCCccHHHHHHHHHC----CCCeEEEeech-
Q 046424          163 GFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFE---GLNQLVDVAGGLGANLKSIVSKY----PQLRGINFDLP-  234 (266)
Q Consensus       163 ~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~---~~~~vvDVGGG~G~~~~~l~~~~----P~l~~~v~Dlp-  234 (266)
                      -|+.+++|+..-+.|.+++..       .+.+....-+   +...|+|||+|+|.++...+++.    -..+++.++-. 
T Consensus       152 tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~  224 (448)
T PF05185_consen  152 TYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP  224 (448)
T ss_dssp             HHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred             cHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence            567777777655666655422       2333322111   35789999999999987766654    45778888764 


Q ss_pred             HHHhhC----CC---CCCceEEeccCCC-CCCCC-CEEE
Q 046424          235 HVLKHA----PS---CPGVEHVGGDMFV-EVPKG-QAIF  264 (266)
Q Consensus       235 ~vi~~a----~~---~~ri~~~~gD~f~-~~P~~-D~~~  264 (266)
                      ..+...    +.   .++|+++.+||-+ ..|.. |+++
T Consensus       225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV  263 (448)
T PF05185_consen  225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV  263 (448)
T ss_dssp             HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred             hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence            322221    11   2799999999999 78876 9875

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.58  E-value=0.0039  Score=52.61  Aligned_cols=74  Identities=20%  Similarity=0.288  Sum_probs=52.8

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCC-C-
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPK-G-  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~-~-  260 (266)
                      .+++.++ .+...+|+|||+|+|.++.-++... +.-+++.+|. |..++.|+.+      .+|+++.+|-...+|. + 
T Consensus        63 ~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ap  141 (209)
T PF01135_consen   63 RMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAP  141 (209)
T ss_dssp             HHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-S
T ss_pred             HHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCC
Confidence            4566666 7778999999999999999888874 4445777775 6677766642      5899999999887765 3 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |.|++
T Consensus       142 fD~I~v  147 (209)
T PF01135_consen  142 FDRIIV  147 (209)
T ss_dssp             EEEEEE
T ss_pred             cCEEEE
Confidence             88875

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=96.57  E-value=0.0028  Score=56.72  Aligned_cols=63  Identities=14%  Similarity=0.112  Sum_probs=51.5

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC----C---CCceEEeccCCC-CCC-CC-CEEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS----C---PGVEHVGGDMFV-EVP-KG-QAIF  264 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~----~---~ri~~~~gD~f~-~~P-~~-D~~~  264 (266)
                      +.++|+|||||+|.+++-.+++. .-+++.+|-.++++.+.+    +   +.|+++.|..-+ .+| +. |+++
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIv  132 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIV  132 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEe
Confidence            45999999999999999999998 567899999888776654    2   679999998888 788 44 8874

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=96.50  E-value=0.0054  Score=52.35  Aligned_cols=54  Identities=15%  Similarity=0.239  Sum_probs=40.0

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhC-C---C--CCCceEEeccCCC
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHA-P---S--CPGVEHVGGDMFV  255 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a-~---~--~~ri~~~~gD~f~  255 (266)
                      ...+|+||||.|.++.++++++|+..+++++.= +++..+ +   +  ...|.++.+|--+
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~  109 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE  109 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence            368999999999999999999999999999983 333322 2   1  1356666665443

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.49  E-value=0.012  Score=50.06  Aligned_cols=62  Identities=10%  Similarity=0.163  Sum_probs=46.6

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCC------------------CCCCceEEeccCCCCCCC--
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAP------------------SCPGVEHVGGDMFVEVPK--  259 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~------------------~~~ri~~~~gD~f~~~P~--  259 (266)
                      ...+++|+|||.|..+.-|+++  ..+++.+|+.+ .++.+.                  ...+|++..+|+|+..+.  
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~  114 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL  114 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence            4579999999999999999985  77899999965 444321                  025799999999984332  


Q ss_pred             -C-CEEE
Q 046424          260 -G-QAIF  264 (266)
Q Consensus       260 -~-D~~~  264 (266)
                       . |.++
T Consensus       115 ~~fd~v~  121 (218)
T PRK13255        115 ADVDAVY  121 (218)
T ss_pred             CCeeEEE
Confidence             2 6665

>PRK00536 speE spermidine synthase; Provisional

Probab=96.45  E-value=0.0055  Score=53.42  Aligned_cols=62  Identities=13%  Similarity=0.056  Sum_probs=48.5

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----------CCCceEEeccCCCCCC-CC-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----------CPGVEHVGGDMFVEVP-KG-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----------~~ri~~~~gD~f~~~P-~~-D~~~l  265 (266)
                      .++++||=||||.|..++++++. |. +++.+|+. .|++.+++          .+|++++.  ++.+.. .. |+|++
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~~~~~~~fDVIIv  145 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLLDLDIKKYDLIIC  145 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhhhccCCcCCEEEE
Confidence            47899999999999999999987 55 99999995 58877665          28999886  344333 34 98875

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.45  E-value=0.0033  Score=54.40  Aligned_cols=41  Identities=15%  Similarity=0.158  Sum_probs=32.2

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS  242 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~  242 (266)
                      ...+|+|||||+|.+++.+++..+. +++++|+. ..++.+++
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~  160 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARE  160 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHH
Confidence            5689999999999999887776554 69999995 46666554

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=96.45  E-value=0.0051  Score=55.24  Aligned_cols=65  Identities=14%  Similarity=0.096  Sum_probs=47.6

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----C----CCceEEe----ccCCCCC--CCC--CEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----C----PGVEHVG----GDMFVEV--PKG--QAI  263 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~----~ri~~~~----gD~f~~~--P~~--D~~  263 (266)
                      ...++||||||+|.....++.+.|+.+++..|+. ..++.|+.    +    +||++..    .++|..+  +..  |++
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            4589999999999988888999999999999995 45655543    2    4787753    4566643  332  877


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      +-
T Consensus       194 vc  195 (321)
T PRK11727        194 LC  195 (321)
T ss_pred             Ee
Confidence            63

>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family

Probab=96.40  E-value=0.0037  Score=54.00  Aligned_cols=59  Identities=22%  Similarity=0.343  Sum_probs=49.6

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK  113 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~  113 (266)
                      .-+.|++.|...+ .++|+.|||+.+|+    +..-+.|+|..|+..|+|+.+         +++|++++...
T Consensus        10 ral~IL~~l~~~~-~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~~---------~~~Y~lG~~~~   68 (248)
T TIGR02431        10 RGLAVIEAFGAER-PRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTSD---------GRLFWLTPRVL   68 (248)
T ss_pred             HHHHHHHHHhcCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC---------CCEEEecHHHH
Confidence            3456888887643 38999999999999    899999999999999999975         57899988543

Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=96.38  E-value=0.0037  Score=39.57  Aligned_cols=45  Identities=18%  Similarity=0.356  Sum_probs=38.7

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLT   91 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~   91 (266)
                      .+..|+..|.++|  .+|..|||+.+|+    +...+.+.++-|...|+++
T Consensus         4 ~~~~Il~~l~~~~--~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~   48 (48)
T PF13412_consen    4 TQRKILNYLRENP--RITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE   48 (48)
T ss_dssp             HHHHHHHHHHHCT--TS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence            3567889999987  8999999999999    9999999999999999874

...

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=96.37  E-value=0.0028  Score=42.38  Aligned_cols=53  Identities=19%  Similarity=0.330  Sum_probs=44.6

Q ss_pred             HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+|.--.++.|+..|...+  +.|+.+||+.+|+    ++..+.+-|+.|...|+|+..
T Consensus         5 ~aL~~p~R~~Il~~L~~~~--~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~   57 (61)
T PF12840_consen    5 KALSDPTRLRILRLLASNG--PMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE   57 (61)
T ss_dssp             HHHTSHHHHHHHHHHHHCS--TBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred             HHhCCHHHHHHHHHHhcCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence            3444557788899995555  9999999999999    999999999999999999976

...

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=96.33  E-value=0.0033  Score=52.92  Aligned_cols=61  Identities=18%  Similarity=0.258  Sum_probs=44.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCc--eEEeccCCC--CCCCC--CEEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGV--EHVGGDMFV--EVPKG--QAIF  264 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri--~~~~gD~f~--~~P~~--D~~~  264 (266)
                      ....|+|||||+|..+.-+...  ....+++|+ |++++.|.+ ..+  .++-+||=+  |++++  |-++
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~I  117 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVI  117 (270)
T ss_pred             CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEE
Confidence            3789999999999988777654  466899999 678887765 233  467788888  45555  6544

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.32  E-value=0.01  Score=55.46  Aligned_cols=72  Identities=14%  Similarity=0.184  Sum_probs=53.5

Q ss_pred             HHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCCC---CC-CC-C
Q 046424          193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFVE---VP-KG-Q  261 (266)
Q Consensus       193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~~---~P-~~-D  261 (266)
                      +..++ .....+|+|+|||+|..+..+++..++.+++.+|+ |+.++.++.+     -+++++.+|..+.   .+ .. |
T Consensus       237 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD  315 (427)
T PRK10901        237 ATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFD  315 (427)
T ss_pred             HHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCC
Confidence            34444 44568999999999999999999998888999999 4466655432     2478899999862   22 23 8


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      .+++
T Consensus       316 ~Vl~  319 (427)
T PRK10901        316 RILL  319 (427)
T ss_pred             EEEE
Confidence            8874

>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional

Probab=96.30  E-value=0.0064  Score=46.40  Aligned_cols=67  Identities=22%  Similarity=0.365  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           33 LPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        33 ~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      .+.+|.--.++.|+..|...|  +.++.||++.+++    ++..+.+-|+.|...|+|+..+    .|+ .-.|++++
T Consensus         9 ~fkaLadptRl~IL~~L~~~~--~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r----~Gr-~~~Y~l~~   75 (117)
T PRK10141          9 LFKILSDETRLGIVLLLRESG--ELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRK----QGK-WVHYRLSP   75 (117)
T ss_pred             HHHHhCCHHHHHHHHHHHHcC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEE----EcC-EEEEEECc
Confidence            445666668899999998755  8999999999999    8999999999999999999774    221 33477765

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=96.30  E-value=0.013  Score=50.92  Aligned_cols=71  Identities=13%  Similarity=0.286  Sum_probs=53.9

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C---CCceEEeccCCC-CCCCCC
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----C---PGVEHVGGDMFV-EVPKGQ  261 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~---~ri~~~~gD~f~-~~P~~D  261 (266)
                      .|++.-+ .+....|+.||.|+|.+...++++-  -+++.+++ |..++..+.    .   .+.+++.||+++ ++|--|
T Consensus        49 ~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd  125 (315)
T KOG0820|consen   49 QIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFD  125 (315)
T ss_pred             HHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccc
Confidence            4444444 6678999999999999999999994  46777777 455555433    2   579999999999 888766


Q ss_pred             EEE
Q 046424          262 AIF  264 (266)
Q Consensus       262 ~~~  264 (266)
                      .++
T Consensus       126 ~cV  128 (315)
T KOG0820|consen  126 GCV  128 (315)
T ss_pred             eee
Confidence            553

>TIGR00478 tly hemolysin TlyA family protein

Probab=96.29  E-value=0.023  Score=48.60  Aligned_cols=57  Identities=18%  Similarity=0.097  Sum_probs=40.0

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH--HHhhCCCCCCce
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH--VLKHAPSCPGVE  247 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~--vi~~a~~~~ri~  247 (266)
                      ..+++.+...-...+++|||||+|.++..++++ +--+++.+|..+  +....+.++|+.
T Consensus        64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~  122 (228)
T TIGR00478        64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVK  122 (228)
T ss_pred             HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCee
Confidence            345555541124579999999999999999987 445799999965  444455556654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=96.25  E-value=0.0052  Score=51.68  Aligned_cols=74  Identities=15%  Similarity=0.248  Sum_probs=45.4

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC---------------CCCceEEeccCC
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS---------------CPGVEHVGGDMF  254 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~---------------~~ri~~~~gD~f  254 (266)
                      .+++.+. ......++|||+|.|....+.+-.++=-+++++++-+ ..+.++.               ..+|++..|||+
T Consensus        33 ~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl  111 (205)
T PF08123_consen   33 KILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL  111 (205)
T ss_dssp             HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred             HHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence            4555555 6677899999999999999888777644589998843 2222211               257899999999


Q ss_pred             C-C-----CCCCCEEEe
Q 046424          255 V-E-----VPKGQAIFM  265 (266)
Q Consensus       255 ~-~-----~P~~D~~~l  265 (266)
                      + +     +..+|++++
T Consensus       112 ~~~~~~~~~s~AdvVf~  128 (205)
T PF08123_consen  112 DPDFVKDIWSDADVVFV  128 (205)
T ss_dssp             THHHHHHHGHC-SEEEE
T ss_pred             ccHhHhhhhcCCCEEEE
Confidence            8 3     244688876

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG2345 Predicted transcriptional regulator [Transcription]

Probab=96.19  E-value=0.0081  Score=50.70  Aligned_cols=69  Identities=25%  Similarity=0.405  Sum_probs=56.5

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccCC
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPN  118 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~  118 (266)
                      .|...|...|  |+|+.|||+++|+    ++..+++.|..|.+.|+++.....++-|+..-.|++|..+...+++
T Consensus        15 ~il~lL~~~g--~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f~~   83 (218)
T COG2345          15 RILELLKKSG--PVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQFPK   83 (218)
T ss_pred             HHHHHHhccC--CccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhcch
Confidence            4667787776  9999999999999    9999999999999999998654333346667779999988775544

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.19  E-value=0.0065  Score=47.46  Aligned_cols=52  Identities=17%  Similarity=0.158  Sum_probs=38.5

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCC
Q 046424          204 QLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV  255 (266)
Q Consensus       204 ~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~  255 (266)
                      +++|||||.|.++..+++.+|..+++.+|-- ...+.++.      .++++++...+..
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            5899999999999999999999999999984 44443332      1346665555443

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=96.18  E-value=0.0027  Score=51.32  Aligned_cols=62  Identities=21%  Similarity=0.393  Sum_probs=43.6

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCCCC---CC--C-CCEEEeC
Q 046424          203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFVE---VP--K-GQAIFMK  266 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~~---~P--~-~D~~~lk  266 (266)
                      ++|+|+-||.|..++++++.+..  ++.+|+. .-++.++.+       +||+++.+|+++-   +.  . .|+++++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~--Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDR--VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-E--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHhCCe--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            47999999999999999999874  7888884 455555432       6999999999982   22  2 3899874

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A

Probab=96.17  E-value=0.0045  Score=43.57  Aligned_cols=57  Identities=23%  Similarity=0.298  Sum_probs=42.9

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      |+..+.. |  +.+..+|+..+++    +...+.+.|..|...|+++..         ++.|.+|+.|..++.
T Consensus        11 IL~~l~~-~--~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~~---------~~~Y~lTekG~~~l~   67 (77)
T PF14947_consen   11 ILKILSK-G--GAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKKK---------DGKYRLTEKGKEFLE   67 (77)
T ss_dssp             HHHHH-T-T---B-HHHHHTTST------HHHHHHHHHHHHHTTSEEEE---------TTEEEE-HHHHHHHH
T ss_pred             HHHHHHc-C--CCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeCC---------CCEEEECccHHHHHH
Confidence            4444543 3  8999999999999    999999999999999999765         789999999886653

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.14  E-value=0.027  Score=47.21  Aligned_cols=72  Identities=14%  Similarity=0.235  Sum_probs=55.7

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCC-C--
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPK-G--  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~-~--  260 (266)
                      .++..++ .+...+|++||+|+|..+.-+++.--  +++-+|+ ++..+.|+.+      ++|.++.||=.+.+|. +  
T Consensus        63 ~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPy  139 (209)
T COG2518          63 RMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPY  139 (209)
T ss_pred             HHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCc
Confidence            4556666 77889999999999998887777655  7777777 4556666542      5699999999998887 4  


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |.|+.
T Consensus       140 D~I~V  144 (209)
T COG2518         140 DRIIV  144 (209)
T ss_pred             CEEEE
Confidence            98875

>COG1414 IclR Transcriptional regulator [Transcription]

Probab=96.11  E-value=0.0076  Score=52.13  Aligned_cols=60  Identities=23%  Similarity=0.385  Sum_probs=49.7

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK  113 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~  113 (266)
                      -+.|+++|.+.+ .++++.|||+++|+    +..-+.|+|..|+..|+++.+.   .    .++|++++...
T Consensus         6 al~iL~~l~~~~-~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d~---~----~g~Y~Lg~~~~   65 (246)
T COG1414           6 ALAILDLLAEGP-GGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQDP---E----DGRYRLGPRLL   65 (246)
T ss_pred             HHHHHHHHHhCC-CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEcC---C----CCcEeehHHHH
Confidence            356889998843 35779999999999    8999999999999999999872   1    56899998543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.10  E-value=0.004  Score=53.89  Aligned_cols=66  Identities=20%  Similarity=0.290  Sum_probs=50.8

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCC---CCCC-C-CEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFV---EVPK-G-QAI  263 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~---~~P~-~-D~~  263 (266)
                      .++++||=||||.|..+.++++..|-.+.+++|+ |.|++.++.          .+|++++.+|-+.   ..+. . |++
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            3689999999999999999997777788999999 557777654          2799999998765   4555 5 777


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      ++
T Consensus       155 i~  156 (246)
T PF01564_consen  155 IV  156 (246)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional

Probab=96.09  E-value=0.0069  Score=52.62  Aligned_cols=59  Identities=14%  Similarity=0.283  Sum_probs=49.1

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK  113 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~  113 (266)
                      -+.|++.|.+.+  ++|+.|||+.+|+    +..-+.|+|+.|+..|+++++.   .    .++|++++...
T Consensus        16 ~l~IL~~l~~~~--~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~~---~----~~~Y~lG~~~~   74 (257)
T PRK15090         16 VFGILQALGEER--EIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQEG---E----SEKYSLTLKLF   74 (257)
T ss_pred             HHHHHHHhhcCC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---C----CCcEEecHHHH
Confidence            356778887654  8999999999999    8999999999999999999762   1    57899997543

>PHA00738 putative HTH transcription regulator

Probab=96.08  E-value=0.0088  Score=44.53  Aligned_cols=59  Identities=20%  Similarity=0.237  Sum_probs=48.6

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      .++.|++.|..++  ++++.+|++.+++    +...+.+-|+.|...|+|....    .|+ .-.|++++
T Consensus        13 tRr~IL~lL~~~e--~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK----~Gr-~vyY~Ln~   71 (108)
T PHA00738         13 LRRKILELIAENY--ILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYK----EGR-TLYAKIRE   71 (108)
T ss_pred             HHHHHHHHHHHcC--CccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEE----ECC-EEEEEECC
Confidence            5678999998864  7999999999999    9999999999999999999873    222 34466664

>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A

Probab=96.05  E-value=0.0044  Score=44.04  Aligned_cols=68  Identities=16%  Similarity=0.200  Sum_probs=50.1

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYF  115 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l  115 (266)
                      ++++|...|...+  .+++.+|.+.+|+    +...+.+.|..|...|+|+.... -.+++..-.|++|+.|+..
T Consensus         1 vRl~Il~~L~~~~--~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~-~~~~~p~t~~~lT~~Gr~~   68 (80)
T PF13601_consen    1 VRLAILALLYANE--EATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKE-FEGRRPRTWYSLTDKGREA   68 (80)
T ss_dssp             HHHHHHHHHHHHS--EEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE--SSS--EEEEEE-HHHHHH
T ss_pred             CHHHHHHHHhhcC--CCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEe-ccCCCCeEEEEECHHHHHH
Confidence            4688999998865  8999999999999    99999999999999999997632 1122223348888877643

>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities

Probab=96.05  E-value=0.0042  Score=39.26  Aligned_cols=43  Identities=21%  Similarity=0.375  Sum_probs=38.0

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLT   91 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~   91 (266)
                      ++.|...|.+ |  +.++.||++.+|+    +...+.+-|+.|...|+++
T Consensus         4 R~~Il~~L~~-~--~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~   46 (47)
T PF01022_consen    4 RLRILKLLSE-G--PLTVSELAEELGL----SQSTVSHHLKKLREAGLVE   46 (47)
T ss_dssp             HHHHHHHHTT-S--SEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHh-C--CCchhhHHHhccc----cchHHHHHHHHHHHCcCee
Confidence            4667888887 4  9999999999999    9999999999999999986

One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....

>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A

Probab=96.02  E-value=0.0094  Score=40.38  Aligned_cols=60  Identities=20%  Similarity=0.376  Sum_probs=40.9

Q ss_pred             hhHHHh-hcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424           45 LLEIMA-KASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS  112 (266)
Q Consensus        45 lfd~L~-~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s  112 (266)
                      |+..|. ..+  +.+..+||+.+++    +...+.+.++-|...|+|++.. +..|++ ...|++|+.|
T Consensus         8 vL~~l~~~~~--~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~-~~~d~R-~~~~~LT~~G   68 (68)
T PF13463_consen    8 VLRALAHSDG--PMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKER-DPHDKR-SKRYRLTPAG   68 (68)
T ss_dssp             HHHHHT--TS---BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEE-ESSCTT-SEEEEE-HHH
T ss_pred             HHHHHHccCC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCcCC-eeEEEeCCCC
Confidence            445555 444  8999999999999    9999999999999999997652 112221 3468888754

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=95.98  E-value=0.026  Score=44.53  Aligned_cols=38  Identities=13%  Similarity=0.291  Sum_probs=31.2

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhh
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKH  239 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~  239 (266)
                      ....+|+|||||.|.++..+.+..+  +++++|..+ .++.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK   59 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh
Confidence            4678999999999999999977655  899999954 5544

...

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=95.98  E-value=0.023  Score=48.23  Aligned_cols=55  Identities=15%  Similarity=0.220  Sum_probs=42.5

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhC---CC---------------CCCceEEeccCCC
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHA---PS---------------CPGVEHVGGDMFV  255 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a---~~---------------~~ri~~~~gD~f~  255 (266)
                      .....++++.|||.|.-+.-|+++  +.+++++|+.+ .|+.+   +.               .++|+++.||||+
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~  108 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFE  108 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTT
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccccc
Confidence            445679999999999999999987  57899999965 55543   10               1579999999999

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=95.91  E-value=0.0065  Score=52.45  Aligned_cols=60  Identities=17%  Similarity=0.076  Sum_probs=43.3

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------C----CceEEeccCCCCCCCCCEEE
Q 046424          203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--------P----GVEHVGGDMFVEVPKGQAIF  264 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--------~----ri~~~~gD~f~~~P~~D~~~  264 (266)
                      .+|||||||.|.++..|++..  ..++++|.- ..|+.|+++        .    |+++...|.=...+.-|+++
T Consensus        91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVv  163 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVV  163 (282)
T ss_pred             ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceee
Confidence            679999999999999999996  568899995 477777653        2    46666555544344345553

>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein

Probab=95.89  E-value=0.011  Score=37.06  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=32.2

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +.|..+||+.+++    +...+.+.|+.|...|++...
T Consensus         8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~~   41 (48)
T smart00419        8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISRE   41 (48)
T ss_pred             ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            7899999999999    999999999999999999875

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=95.87  E-value=0.03  Score=48.80  Aligned_cols=68  Identities=21%  Similarity=0.395  Sum_probs=51.9

Q ss_pred             HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCC----CCCCceEEeccCCC-CCCC
Q 046424          189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAP----SCPGVEHVGGDMFV-EVPK  259 (266)
Q Consensus       189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~----~~~ri~~~~gD~f~-~~P~  259 (266)
                      ...+++..+ .++...|+|||.|.|.+...|++..  -+.+++|.- ..++..+    ..++++++.+|+++ +.+.
T Consensus        19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~   92 (262)
T PF00398_consen   19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYD   92 (262)
T ss_dssp             HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGG
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHH
Confidence            456677776 6678999999999999999999998  678888874 3443333    34899999999998 5544

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=95.87  E-value=0.025  Score=48.06  Aligned_cols=63  Identities=11%  Similarity=-0.042  Sum_probs=44.7

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC-----CCCceEEeccCCC-C-CC-CC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS-----CPGVEHVGGDMFV-E-VP-KG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~-----~~ri~~~~gD~f~-~-~P-~~-D~~~l  265 (266)
                      ...+|+|||||.|.++..+++.  ..+++++|+.+ .++.++.     ..++++..+|+.+ + .+ .. |++++
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~  120 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTC  120 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEE
Confidence            4578999999999999988886  46789999864 4554443     1357777777765 2 22 33 88864

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=95.87  E-value=0.011  Score=55.20  Aligned_cols=65  Identities=17%  Similarity=0.338  Sum_probs=49.6

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCC---CC---CC-CEEE
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVE---VP---KG-QAIF  264 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~---~P---~~-D~~~  264 (266)
                      ..+..+|+|+|||+|.++..+++...  +++.+|. |+.++.++.+      .+|+++.+|..+.   ++   .. |+++
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi  367 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL  367 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence            44568999999999999999998753  6899999 5677766542      6899999998652   21   23 8887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       368 ~  368 (431)
T TIGR00479       368 L  368 (431)
T ss_pred             E
Confidence            6

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=95.86  E-value=0.011  Score=56.37  Aligned_cols=53  Identities=9%  Similarity=0.094  Sum_probs=40.5

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech--HHHhhCCC-----CCCceEEeccC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP--HVLKHAPS-----CPGVEHVGGDM  253 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp--~vi~~a~~-----~~ri~~~~gD~  253 (266)
                      +...+||||||.|.++.++++++|+..++++|.-  .+...++.     ...+.++.+|+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~  406 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL  406 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            4689999999999999999999999999999983  23322221     24566676665

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=95.85  E-value=0.031  Score=50.34  Aligned_cols=63  Identities=17%  Similarity=0.126  Sum_probs=52.1

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEEeccCCCCCC-CC--CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVP-KG--QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~~~P-~~--D~~~  264 (266)
                      ....++||||++.|.+...++++  +.+++.+|.-++-+.....+||+.+.+|-|...| ..  |.++
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvV  275 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLV  275 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEE
Confidence            45689999999999999999998  5699999987777766777999999999999655 32  6554

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=95.81  E-value=0.014  Score=49.94  Aligned_cols=52  Identities=17%  Similarity=0.229  Sum_probs=42.0

Q ss_pred             HHHHHcc-CCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC
Q 046424          191 EILEIYK-GFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS  242 (266)
Q Consensus       191 ~i~~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~  242 (266)
                      .+++.++ .|-....++||||++|.+..+|++.|-....+++|+.+ .|..|+.
T Consensus        47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark  100 (288)
T KOG2899|consen   47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARK  100 (288)
T ss_pred             hhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHH
Confidence            4455554 25578999999999999999999999999999999955 5666654

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.78  E-value=0.019  Score=50.84  Aligned_cols=41  Identities=15%  Similarity=0.248  Sum_probs=32.0

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL  233 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl  233 (266)
                      .+...++.+++ ++|+|||||+|.++.+++++.|. .++++|-
T Consensus       106 rl~p~l~~L~g-k~VLDIGC~nGY~~frM~~~GA~-~ViGiDP  146 (315)
T PF08003_consen  106 RLLPHLPDLKG-KRVLDIGCNNGYYSFRMLGRGAK-SVIGIDP  146 (315)
T ss_pred             HHHhhhCCcCC-CEEEEecCCCcHHHHHHhhcCCC-EEEEECC
Confidence            44455533644 89999999999999999999876 4788885

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=95.78  E-value=0.0049  Score=42.12  Aligned_cols=47  Identities=19%  Similarity=0.217  Sum_probs=41.0

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .|..|+..|-..|  +.|+.|||+.+|+    +...+.+.|+-|...|+++..
T Consensus         9 ~E~~vy~~Ll~~~--~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~   55 (68)
T PF01978_consen    9 NEAKVYLALLKNG--PATAEEIAEELGI----SRSTVYRALKSLEEKGLVERE   55 (68)
T ss_dssp             HHHHHHHHHHHHC--HEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            3455676776555  9999999999999    999999999999999999987

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=95.77  E-value=0.0087  Score=54.99  Aligned_cols=62  Identities=10%  Similarity=0.102  Sum_probs=46.5

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCC---C-CCEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVP---K-GQAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P---~-~D~~~l  265 (266)
                      ..+++|+|||+|.++..++..  ..+++.+|. |..++.++.+      ++++++.+|+.+..+   . -|++++
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~  306 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLV  306 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence            478999999999999999864  467899998 4566655532      579999999865222   2 388875

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein

Probab=95.75  E-value=0.013  Score=42.50  Aligned_cols=68  Identities=24%  Similarity=0.294  Sum_probs=50.6

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  +.+..+||+.+++    +...+.+.++-|...|+|+....  ..+.-...|.+|+.+..+.
T Consensus        11 ~~~~il~~l~~~~--~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~--~~~~r~~~~~lT~~g~~~~   78 (101)
T smart00347       11 TQFLVLRILYEEG--PLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPS--PEDRRSVLVSLTEEGRELI   78 (101)
T ss_pred             HHHHHHHHHHHcC--CcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCC--CCCCCeEEEEECHhHHHHH
Confidence            3566788887766  7999999999999    89999999999999999997621  0111123577777665444

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=95.72  E-value=0.028  Score=49.35  Aligned_cols=55  Identities=18%  Similarity=0.224  Sum_probs=44.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCC--CeEEEeechH-HHhhCCC------CCC-ceEEeccCCC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQ--LRGINFDLPH-VLKHAPS------CPG-VEHVGGDMFV  255 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~--l~~~v~Dlp~-vi~~a~~------~~r-i~~~~gD~f~  255 (266)
                      .+.+||||.||+|.+...+++.+|.  .++.+.|..+ -|+..++      ... ++|..+|-|+
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd  199 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFD  199 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCC
Confidence            6799999999999999999999998  6788889853 5554433      244 4999999998

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR

Probab=95.72  E-value=0.018  Score=48.21  Aligned_cols=69  Identities=22%  Similarity=0.298  Sum_probs=53.0

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      ..|+..|...|  +.|..+||+.+|+    ++..+.+.|+.|...|+|+......+.|+..-.|++|+.+..++.
T Consensus         4 ~~IL~~L~~~~--~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~   72 (203)
T TIGR02702         4 EDILSYLLKQG--QATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP   72 (203)
T ss_pred             HHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence            45777887766  8999999999999    999999999999999999865210112333445899988876654

All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.

>PRK10163 DNA-binding transcriptional repressor AllR; Provisional

Probab=95.71  E-value=0.014  Score=51.28  Aligned_cols=60  Identities=17%  Similarity=0.202  Sum_probs=49.5

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS  112 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s  112 (266)
                      .-+.|++.|...+ .++|+.|||+.+|+    +..-+.|+|..|+..|+|..+.   .    .++|+++...
T Consensus        26 r~l~IL~~~~~~~-~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~~---~----~~~Y~lG~~l   85 (271)
T PRK10163         26 RGIAILQYLEKSG-GSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQDS---Q----LGWWHIGLGV   85 (271)
T ss_pred             HHHHHHHHHHhCC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---C----CCeEEecHHH
Confidence            3456888887754 37999999999999    8999999999999999998762   1    5789998744

>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family

Probab=95.71  E-value=0.025  Score=38.00  Aligned_cols=43  Identities=23%  Similarity=0.303  Sum_probs=38.2

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      ++|..|||+.+|+    +...+.+.|..|...|++....        .+.|.++|
T Consensus        25 ~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~~--------~~~~~l~~   67 (67)
T cd00092          25 PLTRQEIADYLGL----TRETVSRTLKELEEEGLISRRG--------RGKYRVNP   67 (67)
T ss_pred             CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC--------CCeEEeCC
Confidence            8999999999999    9999999999999999999761        36787764

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=95.67  E-value=0.0093  Score=50.90  Aligned_cols=40  Identities=15%  Similarity=0.041  Sum_probs=34.2

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC  243 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~  243 (266)
                      ..+|||||||-|.++..+++..  .+++..|+. +.|+.|+.+
T Consensus        60 g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~h  100 (243)
T COG2227          60 GLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLH  100 (243)
T ss_pred             CCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHh
Confidence            4899999999999999999996  789999995 477777643

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=95.66  E-value=0.018  Score=48.49  Aligned_cols=63  Identities=13%  Similarity=-0.033  Sum_probs=45.6

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCCC------CCceEEeccCCC-C--CCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPSC------PGVEHVGGDMFV-E--VPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~~------~ri~~~~gD~f~-~--~P~~-D~~~l  265 (266)
                      ...+|+|||||+|.++..+++..+  +++++|+.+ .++.++..      .++++...|+.+ +  .+.. |++++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~  118 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTC  118 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEe
Confidence            357999999999999999988765  589999854 55554431      258888888765 2  2234 88864

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=95.63  E-value=0.012  Score=40.37  Aligned_cols=43  Identities=16%  Similarity=0.316  Sum_probs=37.2

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      |-+.|.+.|  .+|..|||..+++    ++..++.+|..|...|.+++.
T Consensus         5 i~~~l~~~~--~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~   47 (69)
T PF09012_consen    5 IRDYLRERG--RVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV   47 (69)
T ss_dssp             HHHHHHHS---SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred             HHHHHHHcC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence            567888876  8999999999999    999999999999999999976

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>PRK11569 transcriptional repressor IclR; Provisional

Probab=95.61  E-value=0.013  Score=51.38  Aligned_cols=61  Identities=18%  Similarity=0.202  Sum_probs=49.6

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK  113 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~  113 (266)
                      .-+.|+++|.+.+ .++|+.|||+.+|+    +..-+.|+|..|+..|+++.+.    +   .++|++.+...
T Consensus        29 ral~IL~~l~~~~-~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~~----~---~~~Y~lG~~l~   89 (274)
T PRK11569         29 RGLKLLEWIAESN-GSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQVG----E---LGHWAIGAHAF   89 (274)
T ss_pred             HHHHHHHHHHhCC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC----C---CCeEecCHHHH
Confidence            3456788887643 38999999999999    8999999999999999998752    1   57899987543

>PRK09834 DNA-binding transcriptional activator MhpR; Provisional

Probab=95.57  E-value=0.014  Score=50.94  Aligned_cols=64  Identities=13%  Similarity=0.135  Sum_probs=51.5

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .-+.|++.|...+ .++|+.|||+.+|+    +..-+.|+|..|...|+++++.    +   .+.|++++....+.
T Consensus        12 ral~iL~~l~~~~-~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~~----~---~~~Y~Lg~~~~~l~   75 (263)
T PRK09834         12 RGLMVLRALNRLD-GGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRSA----S---DDSFRLTLKVRQLS   75 (263)
T ss_pred             HHHHHHHHHHhcC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec----C---CCcEEEcHHHHHHH
Confidence            4456788887654 26999999999999    9999999999999999999762    1   57899997654433

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=95.50  E-value=0.033  Score=52.39  Aligned_cols=67  Identities=16%  Similarity=0.143  Sum_probs=49.3

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCCC------CCceEEeccCCCCCCC-C-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      .....+|+|+|||+|..+..+++..+ .-+++.+|+. +.++.++.+      ++|+++.+|..+..|. . |++++
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~  324 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL  324 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence            33457999999999999998888754 4578999995 355554432      4689999999873343 3 88875

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=95.49  E-value=0.021  Score=44.96  Aligned_cols=56  Identities=20%  Similarity=0.301  Sum_probs=40.5

Q ss_pred             CCCceEEEecCCccHHHHHHHHH----CCCCeEEEeechH-HHhhCCC---------CCCceEEeccCCC
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSK----YPQLRGINFDLPH-VLKHAPS---------CPGVEHVGGDMFV  255 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~----~P~l~~~v~Dlp~-vi~~a~~---------~~ri~~~~gD~f~  255 (266)
                      .+..+|||+|||.|.++..++..    .|+++++.+|..+ .++.+..         ..++++..+++..
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence            56899999999999999999982    3889999999843 4444332         1456666665544

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp

Probab=95.49  E-value=0.017  Score=41.14  Aligned_cols=45  Identities=27%  Similarity=0.377  Sum_probs=37.7

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +.|.++||+.+++    ++..+++++.-|...|+++..+  +.    +|.|.++.
T Consensus        25 ~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~--G~----~GGy~L~~   69 (83)
T PF02082_consen   25 PVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR--GR----GGGYRLAR   69 (83)
T ss_dssp             -BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET--ST----TSEEEESS
T ss_pred             CCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC--CC----CCceeecC
Confidence            6999999999999    9999999999999999999763  21    57788876

(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.43  E-value=0.032  Score=44.09  Aligned_cols=70  Identities=20%  Similarity=0.277  Sum_probs=48.3

Q ss_pred             HHHccCCCCCceEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHhhCCCC-----CCceEEeccCCCCCCCC---CE
Q 046424          193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLR-GINFDL-PHVLKHAPSC-----PGVEHVGGDMFVEVPKG---QA  262 (266)
Q Consensus       193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~-~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~~~P~~---D~  262 (266)
                      -..|.++ ..+.+.|+|||.|.+.  ++-.+|..+ ++++|+ |+.++..+.+     =.|.++..|+.++.|.+   |.
T Consensus        41 h~Tygdi-Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDt  117 (185)
T KOG3420|consen   41 HNTYGDI-EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDT  117 (185)
T ss_pred             Hhhhccc-cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEee
Confidence            3445434 3489999999999998  555566655 799999 5566665543     35788888888866553   65


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      .++
T Consensus       118 avi  120 (185)
T KOG3420|consen  118 AVI  120 (185)
T ss_pred             EEe
Confidence            554

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=95.40  E-value=0.11  Score=45.25  Aligned_cols=68  Identities=13%  Similarity=0.326  Sum_probs=51.4

Q ss_pred             HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCC----CCCCceEEeccCCC-CCCC
Q 046424          189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAP----SCPGVEHVGGDMFV-EVPK  259 (266)
Q Consensus       189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~----~~~ri~~~~gD~f~-~~P~  259 (266)
                      ...+++..+ .+....|++||+|.|.+...|+++...  .+.+++.+ .++..+    ..++++++.+|+.+ ++|.
T Consensus        19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~   92 (259)
T COG0030          19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAAR--VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS   92 (259)
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence            456677665 555789999999999999999999776  56666632 333333    24789999999999 7874

>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR

Probab=95.35  E-value=0.026  Score=42.86  Aligned_cols=69  Identities=19%  Similarity=0.218  Sum_probs=53.0

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      .+..|+..|...+  ++|..+||+.+++    +...+.++++-|...|+|+... +..|.+ .-.+.+|+.|..+..
T Consensus        29 ~q~~iL~~l~~~~--~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~-~~~D~R-~~~v~LT~~G~~~~~   97 (118)
T TIGR02337        29 QQWRILRILAEQG--SMEFTQLANQACI----LRPSLTGILARLERDGLVTRLK-ASNDQR-RVYISLTPKGQALYA   97 (118)
T ss_pred             HHHHHHHHHHHcC--CcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHhHHHHHH
Confidence            4455888887776  8999999999999    8889999999999999999762 111211 235888887776554

This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=95.31  E-value=0.092  Score=44.81  Aligned_cols=53  Identities=17%  Similarity=0.135  Sum_probs=42.7

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC------------------CCCceEEeccCCC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS------------------CPGVEHVGGDMFV  255 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~------------------~~ri~~~~gD~f~  255 (266)
                      ...+|++.|||.|.-+.-|++.  ..+++++|+.+ .|+.+..                  ..+|+++.+|||+
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~  114 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN  114 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC
Confidence            4579999999999999999987  66799999964 5554211                  1579999999999

>PRK10857 DNA-binding transcriptional regulator IscR; Provisional

Probab=95.30  E-value=0.03  Score=45.36  Aligned_cols=45  Identities=11%  Similarity=0.122  Sum_probs=39.1

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +.|+++||+.+++    ++..+.++|..|...|+|...+  +.    +|.|.+..
T Consensus        25 ~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~r--G~----~GGy~Lar   69 (164)
T PRK10857         25 PVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSVR--GP----GGGYLLGK   69 (164)
T ss_pred             cCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC--CC----CCCeeccC
Confidence            8999999999999    9999999999999999999753  21    56688875

>TIGR00095 RNA methyltransferase, RsmD family

Probab=95.26  E-value=0.016  Score=48.11  Aligned_cols=53  Identities=15%  Similarity=0.035  Sum_probs=42.4

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCCC
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFV  255 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~  255 (266)
                      ..+++|++||+|.++.+++.+... +++.+|.. +.++.++.+       ++++++.+|.++
T Consensus        50 g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~  110 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR  110 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence            478999999999999999999774 78888985 455544431       478999999966

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PLN02476 O-methyltransferase

Probab=95.21  E-value=0.056  Score=47.55  Aligned_cols=67  Identities=13%  Similarity=0.064  Sum_probs=51.6

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeechH-HHhhCCC-------CCCceEEeccCCCCCC--------CC-
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLPH-VLKHAPS-------CPGVEHVGGDMFVEVP--------KG-  260 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp~-vi~~a~~-------~~ri~~~~gD~f~~~P--------~~-  260 (266)
                      ..+.++|++||+++|..+..+++..| +-+.+-+|..+ ..+.|++       .++|+++.||..+-+|        .. 
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            45789999999999999999999876 66778889854 4555543       2699999999877322        23 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |.+|+
T Consensus       196 D~VFI  200 (278)
T PLN02476        196 DFAFV  200 (278)
T ss_pred             CEEEE
Confidence            88875

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=95.10  E-value=0.054  Score=49.03  Aligned_cols=56  Identities=32%  Similarity=0.501  Sum_probs=46.5

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCC-------------CCCceEEeccCCCC
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDL-PHVLKHAPS-------------CPGVEHVGGDMFVE  256 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~-------------~~ri~~~~gD~f~~  256 (266)
                      ++..+++-+|||.|.-+++++ +||+ -+.+.+|| |++|+.++.             .+|++++.-|-|+.
T Consensus       288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w  358 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW  358 (508)
T ss_pred             cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH
Confidence            477899999999999999987 5785 45789999 779998773             18999999998884

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=95.07  E-value=0.03  Score=45.72  Aligned_cols=55  Identities=15%  Similarity=0.009  Sum_probs=37.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC---------CCCceEEeccCCC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS---------CPGVEHVGGDMFV  255 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~---------~~ri~~~~gD~f~  255 (266)
                      +..+|+++|+|.|..++.+++.++..++++-|.|++++.++.         ..+|++...|.-+
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~  108 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGD  108 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS
T ss_pred             CCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecC
Confidence            568999999999999999999988888999999987775432         1678888888766

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=95.06  E-value=0.026  Score=56.14  Aligned_cols=64  Identities=11%  Similarity=0.070  Sum_probs=49.1

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------CCceEEeccCCCC---CCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--------PGVEHVGGDMFVE---VPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--------~ri~~~~gD~f~~---~P~~-D~~~l  265 (266)
                      +.++|+|+|||+|.++..+++. ...+++.+|+. ..++.++.+        ++++++.+|.|+.   .+.. |++++
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIil  614 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFI  614 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence            4589999999999999999986 33469999995 466655541        4899999999873   3334 98876

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=95.00  E-value=0.026  Score=52.31  Aligned_cols=64  Identities=17%  Similarity=0.135  Sum_probs=47.1

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------CCceEEeccCCCCC------CCC-CEEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--------PGVEHVGGDMFVEV------PKG-QAIF  264 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--------~ri~~~~gD~f~~~------P~~-D~~~  264 (266)
                      +..+|+|+|||+|.++...+.. ...+++.+|+. ..++.++++        ++++++.+|.|+..      ... |+++
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            5689999999999998876643 44589999995 455555431        37999999999832      123 9988


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       299 l  299 (396)
T PRK15128        299 M  299 (396)
T ss_pred             E
Confidence            6

>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR

Probab=94.99  E-value=0.041  Score=43.00  Aligned_cols=45  Identities=11%  Similarity=0.135  Sum_probs=38.7

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +.|.++||+.+++    ++..++++|+.|...|++...+  +.    .|.|.++.
T Consensus        25 ~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~~--G~----~Ggy~l~~   69 (135)
T TIGR02010        25 PVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSVR--GP----GGGYQLGR   69 (135)
T ss_pred             cCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEe--CC----CCCEeccC
Confidence            8999999999999    9999999999999999998652  11    45688875

This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=94.93  E-value=0.022  Score=38.30  Aligned_cols=44  Identities=20%  Similarity=0.170  Sum_probs=37.3

Q ss_pred             ChhHHHhh-cCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           44 GLLEIMAK-ASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        44 glfd~L~~-~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .|.+.|.. .+  |++..|||+.||+    +....+++|..|...|.++..
T Consensus         4 ~Il~~i~~~~~--p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~   48 (62)
T PF04703_consen    4 KILEYIKEQNG--PLKTREIADALGL----SIYQARYYLEKLEKEGKVERS   48 (62)
T ss_dssp             CHHHHHHHHTS---EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEE
T ss_pred             HHHHHHHHcCC--CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            46777777 44  9999999999999    999999999999999999975

>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B

Probab=94.90  E-value=0.018  Score=38.16  Aligned_cols=49  Identities=18%  Similarity=0.339  Sum_probs=40.2

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|+-.|...++..+|..|||+.+++    ++..+.++++.|...|+|+..
T Consensus         6 ~q~~vL~~l~~~~~~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~   54 (62)
T PF12802_consen    6 SQFRVLMALARHPGEELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERE   54 (62)
T ss_dssp             HHHHHHHHHHHSTTSGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            3455677777776212899999999999    999999999999999999987

...

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=94.89  E-value=0.061  Score=50.42  Aligned_cols=72  Identities=13%  Similarity=0.035  Sum_probs=51.5

Q ss_pred             HHHccCCCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC------CCceEEeccCCC-C----CCC
Q 046424          193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV-E----VPK  259 (266)
Q Consensus       193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~-~----~P~  259 (266)
                      ...++ .....+|+|+|||.|..+..+++... .-+++.+|+ ++.++.++.+      ..|+++.+|..+ +    .+.
T Consensus       245 ~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~  323 (434)
T PRK14901        245 APLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR  323 (434)
T ss_pred             HHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence            33344 44568999999999999999998854 568899998 4455555432      468999999876 2    222


Q ss_pred             -C-CEEEe
Q 046424          260 -G-QAIFM  265 (266)
Q Consensus       260 -~-D~~~l  265 (266)
                       . |.|++
T Consensus       324 ~~fD~Vl~  331 (434)
T PRK14901        324 GYFDRILL  331 (434)
T ss_pred             ccCCEEEE
Confidence             3 88875

>COG1959 Predicted transcriptional regulator [Transcription]

Probab=94.86  E-value=0.042  Score=43.86  Aligned_cols=45  Identities=27%  Similarity=0.326  Sum_probs=39.7

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +.|+++||+..++    ++..|.++|..|...|+|+..+  +.    +|-|+++.
T Consensus        25 ~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~r--G~----~GGy~Lar   69 (150)
T COG1959          25 PVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVR--GK----GGGYRLAR   69 (150)
T ss_pred             cccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeec--CC----CCCccCCC
Confidence            7899999999999    9999999999999999999874  22    56788875

>PRK03902 manganese transport transcriptional regulator; Provisional

Probab=94.86  E-value=0.039  Score=43.43  Aligned_cols=55  Identities=24%  Similarity=0.282  Sum_probs=45.4

Q ss_pred             HHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           48 IMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        48 ~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .+...|  +.++.+||+.+++    ++..+.+.++.|...|+|....        ...|++|+.|..+.
T Consensus        16 l~~~~~--~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~~--------~~~i~LT~~G~~~a   70 (142)
T PRK03902         16 LIEEKG--YARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTPKGKKIG   70 (142)
T ss_pred             HHhcCC--CcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEec--------CceEEECHHHHHHH
Confidence            444554  8899999999999    9999999999999999998652        46699999876543

>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial

Probab=94.84  E-value=0.033  Score=43.14  Aligned_cols=46  Identities=22%  Similarity=0.240  Sum_probs=38.3

Q ss_pred             CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           55 TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        55 ~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      ++.|+.|||+.+++    ++..+.++|+.|...|++...+  +.    .+.|.+..
T Consensus        24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~--g~----~ggy~l~~   69 (130)
T TIGR02944        24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKR--GV----EGGYTLAR   69 (130)
T ss_pred             CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecC--CC----CCChhhcC
Confidence            48999999999999    9999999999999999998642  11    45677754

The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=94.80  E-value=0.042  Score=45.10  Aligned_cols=73  Identities=16%  Similarity=0.169  Sum_probs=50.2

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCe---------EEEeech-HHHhhCCCC-------CCceEEeccC
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLR---------GINFDLP-HVLKHAPSC-------PGVEHVGGDM  253 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~---------~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~  253 (266)
                      .++..-. |++...|+|-=||+|.++++.+...++..         +++.|.. +.++.++.+       ..|.+..+|+
T Consensus        19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~   97 (179)
T PF01170_consen   19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA   97 (179)
T ss_dssp             HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred             HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence            3344333 66778999999999999999988888877         8999994 466655432       5689999999


Q ss_pred             CC-CCCC-C-CEEE
Q 046424          254 FV-EVPK-G-QAIF  264 (266)
Q Consensus       254 f~-~~P~-~-D~~~  264 (266)
                      ++ +++. . |+++
T Consensus        98 ~~l~~~~~~~d~Iv  111 (179)
T PF01170_consen   98 RELPLPDGSVDAIV  111 (179)
T ss_dssp             GGGGGTTSBSCEEE
T ss_pred             hhcccccCCCCEEE
Confidence            98 6444 3 8775

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.77  E-value=0.037  Score=41.37  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=25.5

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL  233 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl  233 (266)
                      .....+||||||+|.+.--|.+.  .-+|.++|.
T Consensus        57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~   88 (112)
T PF07757_consen   57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA   88 (112)
T ss_pred             CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence            35689999999999988777765  445788887

; GO: 0008168 methyltransferase activity

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=94.75  E-value=0.17  Score=43.86  Aligned_cols=90  Identities=14%  Similarity=0.125  Sum_probs=55.4

Q ss_pred             chhccccChhHHHHHHHHHHh----cchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHh
Q 046424          163 GFAAAAKDERINNLFNQSMHN----HTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLK  238 (266)
Q Consensus       163 ~~~~~~~~p~~~~~f~~~m~~----~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~  238 (266)
                      -+..+.++|...+.|++....    |-......+++.+..-++...|.|+|||.+..+.    .- --++.-+||-.+  
T Consensus       138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~----~~-~~kV~SfDL~a~--  210 (325)
T KOG3045|consen  138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS----SE-RHKVHSFDLVAV--  210 (325)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh----cc-ccceeeeeeecC--
Confidence            344456778777766665544    3333445566655423467899999999998887    11 124778888432  


Q ss_pred             hCCCCCCceEEeccCCC-CCCCC--CEEEe
Q 046424          239 HAPSCPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       239 ~a~~~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                            +-+++++||-+ |.+..  |+.++
T Consensus       211 ------~~~V~~cDm~~vPl~d~svDvaV~  234 (325)
T KOG3045|consen  211 ------NERVIACDMRNVPLEDESVDVAVF  234 (325)
T ss_pred             ------CCceeeccccCCcCccCcccEEEe
Confidence                  22346788887 66653  76653

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=94.71  E-value=0.058  Score=50.43  Aligned_cols=73  Identities=18%  Similarity=0.216  Sum_probs=50.7

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC------C-CceEEeccCCCC-C--CC-
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC------P-GVEHVGGDMFVE-V--PK-  259 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~------~-ri~~~~gD~f~~-~--P~-  259 (266)
                      ++..++ .....+|+|+|||.|..+..+++..|+.+.+.+|.. +.++.++.+      + +++++.+|.... .  +. 
T Consensus       230 ~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~  308 (426)
T TIGR00563       230 VATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE  308 (426)
T ss_pred             HHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence            344444 445689999999999999999999888889999994 456555432      2 344467777652 2  22 


Q ss_pred             C-CEEEe
Q 046424          260 G-QAIFM  265 (266)
Q Consensus       260 ~-D~~~l  265 (266)
                      . |.+++
T Consensus       309 ~fD~Vll  315 (426)
T TIGR00563       309 QFDRILL  315 (426)
T ss_pred             ccCEEEE
Confidence            3 88874

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=94.66  E-value=0.053  Score=35.75  Aligned_cols=44  Identities=18%  Similarity=0.353  Sum_probs=40.4

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .|.+.|.+.+  .+|++|||+.+++    ++.-++|=|..|...|++...
T Consensus         4 ~Il~~l~~~~--~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~   47 (57)
T PF08220_consen    4 QILELLKEKG--KVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT   47 (57)
T ss_pred             HHHHHHHHcC--CEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            3678888876  9999999999999    999999999999999999986

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

>PRK11512 DNA-binding transcriptional repressor MarR; Provisional

Probab=94.49  E-value=0.043  Score=43.24  Aligned_cols=66  Identities=20%  Similarity=0.149  Sum_probs=48.2

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ..|+..|...+  ++|..+||+.+++    ++..+.++++-|...|+|+... +..|++ .-...+|+.|..+.
T Consensus        43 ~~vL~~l~~~~--~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~-~~~DrR-~~~l~LT~~G~~~~  108 (144)
T PRK11512         43 FKVLCSIRCAA--CITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP-NPNDKR-GVLVKLTTSGAAIC  108 (144)
T ss_pred             HHHHHHHHHcC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CcccCC-eeEeEEChhHHHHH
Confidence            34577776655  8999999999999    9999999999999999999762 112221 22356666555433

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=94.45  E-value=0.019  Score=47.76  Aligned_cols=33  Identities=18%  Similarity=0.412  Sum_probs=30.3

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP  234 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp  234 (266)
                      -..++|||||-|.+++.|...||+--.+++++=
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR   93 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIR   93 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhh
Confidence            478999999999999999999999999988884

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=94.44  E-value=0.089  Score=49.32  Aligned_cols=67  Identities=13%  Similarity=0.126  Sum_probs=49.5

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeech-HHHhhCCCC------CCceEEeccCCC-C-C-CCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFV-E-V-PKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~-~-~-P~~-D~~~l  265 (266)
                      .....+|+|+|||.|..+..+++.. +.-+++.+|+. +.++.++++      ..|+++.+|..+ + . +.. |.+++
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence            4456799999999999999999886 56789999995 455554432      458899999875 2 2 233 88875

>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor

Probab=94.36  E-value=0.072  Score=33.67  Aligned_cols=43  Identities=28%  Similarity=0.393  Sum_probs=38.0

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      |++.|.+.+  +.+..+|++.+++    ++..+.+.|..|...|++...
T Consensus         5 il~~l~~~~--~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~~   47 (53)
T smart00420        5 ILELLAQQG--KVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTRV   47 (53)
T ss_pred             HHHHHHHcC--CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            566666655  8999999999999    999999999999999999976

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=94.30  E-value=0.034  Score=45.41  Aligned_cols=46  Identities=24%  Similarity=0.278  Sum_probs=36.0

Q ss_pred             HHHHHccCCC--CCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHH
Q 046424          191 EILEIYKGFE--GLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPHV  236 (266)
Q Consensus       191 ~i~~~~~~~~--~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v  236 (266)
                      .+.+.++-++  +..+++|+|++.|.++.-++++. +..+++.+|+...
T Consensus        11 ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   11 EIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             HHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            4555555233  45999999999999999999998 7888999999765

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance

Probab=94.29  E-value=0.026  Score=37.10  Aligned_cols=46  Identities=17%  Similarity=0.361  Sum_probs=40.3

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ++.++..|.+.|  +.+..+||+.+++    +...+.++++-|...|+++..
T Consensus         5 q~~iL~~l~~~~--~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~   50 (59)
T PF01047_consen    5 QFRILRILYENG--GITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERE   50 (59)
T ss_dssp             HHHHHHHHHHHS--SEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHcC--CCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEec
Confidence            455677777777  8999999999999    999999999999999999976

This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=94.26  E-value=0.053  Score=45.60  Aligned_cols=66  Identities=12%  Similarity=0.186  Sum_probs=49.5

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeechH-HHhhCCC-------CCCceEEeccCCCCCC--------CC-C
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLPH-VLKHAPS-------CPGVEHVGGDMFVEVP--------KG-Q  261 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp~-vi~~a~~-------~~ri~~~~gD~f~~~P--------~~-D  261 (266)
                      .++++||+||++.|..+..+++..| +.+.+-+|..+ -.+.|++       .+||+++.||..+-+|        .. |
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            3789999999999999999999988 58899999853 5555543       2799999999876222        23 8


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      .+|+
T Consensus       124 ~VFi  127 (205)
T PF01596_consen  124 FVFI  127 (205)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8876

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=94.25  E-value=0.082  Score=45.21  Aligned_cols=44  Identities=32%  Similarity=0.407  Sum_probs=33.7

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCCCCc
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSCPGV  246 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~~ri  246 (266)
                      +.+.++|||||+|.-++.+++.|-+  +|..|.. ..++.+.+.+++
T Consensus        33 ~h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~   77 (261)
T KOG3010|consen   33 GHRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPV   77 (261)
T ss_pred             CcceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCc
Confidence            4569999999999777777777664  7888985 488887765433

>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed

Probab=94.23  E-value=0.068  Score=42.76  Aligned_cols=45  Identities=16%  Similarity=0.110  Sum_probs=39.5

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +.|+++||+..++    ++..|.++|..|...|+|+..+  +.    +|-|.++.
T Consensus        24 ~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~r--G~----~GGy~La~   68 (153)
T PRK11920         24 LSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVR--GR----NGGVRLGR   68 (153)
T ss_pred             cCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec--CC----CCCeeecC
Confidence            7899999999999    9999999999999999999874  21    56788875

>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor

Probab=94.19  E-value=0.11  Score=34.05  Aligned_cols=42  Identities=19%  Similarity=0.320  Sum_probs=36.5

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      |+..|. .+  +.|..+|++.+++    +...+.+.++.|...|++...
T Consensus         2 il~~l~-~~--~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~   43 (66)
T smart00418        2 ILKLLA-EG--ELCVCELAEILGL----SQSTVSHHLKKLREAGLVESR   43 (66)
T ss_pred             HHHHhh-cC--CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence            455665 33  8999999999999    899999999999999999965

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=94.18  E-value=0.13  Score=45.81  Aligned_cols=65  Identities=29%  Similarity=0.311  Sum_probs=47.7

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCceEEeccCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-----CPGVEHVGGDMFV  255 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----~~ri~~~~gD~f~  255 (266)
                      ..+++.+. ......+||+==|.|..+.+|++++|+.+.+++|. |.+++.++.     .+|+.++.++|-+
T Consensus        10 ~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~   80 (310)
T PF01795_consen   10 KEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN   80 (310)
T ss_dssp             HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred             HHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence            45666665 55668999999999999999999999999999999 557766554     2799999999865

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=94.12  E-value=0.047  Score=45.89  Aligned_cols=61  Identities=18%  Similarity=0.187  Sum_probs=45.0

Q ss_pred             EEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-------CCCceEEeccCCCCCCCC---CEEEe
Q 046424          205 LVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-------CPGVEHVGGDMFVEVPKG---QAIFM  265 (266)
Q Consensus       205 vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-------~~ri~~~~gD~f~~~P~~---D~~~l  265 (266)
                      |+||||-+|.+.+.|+++..--+++..|+. .-.+.|+.       .++|++.-+|=|+.++++   |++++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivI   72 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVI   72 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEE
Confidence            689999999999999999999899999994 24444332       379999999999877663   67664

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=94.09  E-value=0.086  Score=40.59  Aligned_cols=69  Identities=16%  Similarity=0.181  Sum_probs=49.7

Q ss_pred             CCCcChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHh-hcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccc
Q 046424           13 KPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMA-KASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLT   91 (266)
Q Consensus        13 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~-~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~   91 (266)
                      .++..+.....+.+.++|--.       .+..++-+|- .+|  |.|+++||+.++.    +..-+.|-|.-|...|++.
T Consensus         7 ~~~~~~~~~~dvl~c~~GLs~-------~Dv~v~~~LL~~~~--~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~   73 (126)
T COG3355           7 EPSRKEFRCEDVLKCVYGLSE-------LDVEVYKALLEENG--PLTVDELAEILNR----SRSTVYRSLQNLLEAGLVE   73 (126)
T ss_pred             ccccccCcHHHHHHHHhCCcH-------HHHHHHHHHHhhcC--CcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCee
Confidence            344444445555555555322       2445555554 455  9999999999999    9999999999999999999


Q ss_pred             ccc
Q 046424           92 CNL   94 (266)
Q Consensus        92 ~~~   94 (266)
                      +.+
T Consensus        74 Rek   76 (126)
T COG3355          74 REK   76 (126)
T ss_pred             eee
Confidence            874

>PRK11050 manganese transport regulator MntR; Provisional

Probab=94.06  E-value=0.072  Score=42.55  Aligned_cols=58  Identities=21%  Similarity=0.281  Sum_probs=47.0

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      |..++...+  +.+..+||+.+++    +...+.++++-|...|++....        ...+.+|+.+..+.
T Consensus        42 I~~~l~~~~--~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~~--------~~~v~LT~~G~~l~   99 (152)
T PRK11050         42 IADLIAEVG--EARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMRP--------YRGVFLTPEGEKLA   99 (152)
T ss_pred             HHHHHHhcC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec--------CCceEECchHHHHH
Confidence            556676655  8999999999999    9999999999999999998752        34578887666544

>smart00344 HTH_ASNC helix_turn_helix ASNC type

Probab=93.94  E-value=0.074  Score=39.54  Aligned_cols=46  Identities=17%  Similarity=0.293  Sum_probs=42.0

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTC   92 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~   92 (266)
                      .+..|+.+|..++  +.|..+||+.+|+    ++..+.+.++.|...|++..
T Consensus         4 ~D~~il~~L~~~~--~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~   49 (108)
T smart00344        4 IDRKILEELQKDA--RISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG   49 (108)
T ss_pred             HHHHHHHHHHHhC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence            4677889998876  8999999999999    99999999999999999994

AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli

>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein

Probab=93.83  E-value=0.086  Score=44.14  Aligned_cols=60  Identities=25%  Similarity=0.320  Sum_probs=48.8

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS  112 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s  112 (266)
                      .+..|+..|.+.|  +.+..+||+.+++    ++..+.+.|..|...|+++.... .     ...|.+|+.|
T Consensus       144 ~~~~IL~~l~~~g--~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~~-r-----~~~~~lT~~G  203 (203)
T TIGR01884       144 EELKVLEVLKAEG--EKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKGR-K-----GKRYSLTKLG  203 (203)
T ss_pred             HHHHHHHHHHHcC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEcC-C-----ccEEEeCCCC
Confidence            3456778887765  8999999999999    99999999999999999998720 1     4668888754

Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=93.82  E-value=0.05  Score=49.77  Aligned_cols=51  Identities=12%  Similarity=0.129  Sum_probs=41.0

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC------CCceEEeccCCC
Q 046424          203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFV  255 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~  255 (266)
                      .+++|++||+|.++..+++...  +++.+|.. +.++.++++      ++++++.+|.++
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            4699999999999999988865  78999984 466655542      589999999865

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=93.75  E-value=0.19  Score=44.88  Aligned_cols=65  Identities=18%  Similarity=0.195  Sum_probs=51.6

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEEeccCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----PGVEHVGGDMFV  255 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gD~f~  255 (266)
                      ..+++.+. ......+||+=.|.|..+..++++.|+.+.+++|.. .+++.+++.     +|++++.++|-+
T Consensus        10 ~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~   80 (305)
T TIGR00006        10 DEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN   80 (305)
T ss_pred             HHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            45566654 445579999999999999999999988899999994 566665432     589999999886

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator)

Probab=93.72  E-value=0.097  Score=40.41  Aligned_cols=45  Identities=22%  Similarity=0.242  Sum_probs=38.0

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +.|.++||+.+++    ++..++++|+.|...|++...+  +.    .+.|.++.
T Consensus        25 ~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~--g~----~ggy~l~~   69 (132)
T TIGR00738        25 PVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR--GP----GGGYRLAR   69 (132)
T ss_pred             cCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc--CC----CCCccCCC
Confidence            8999999999999    9999999999999999998652  11    45677764

This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.69  E-value=0.12  Score=42.44  Aligned_cols=65  Identities=14%  Similarity=0.179  Sum_probs=47.7

Q ss_pred             CceEEEecCCccHHHHHHHHH-CCCCeEEEeech-HHHhhCC----CC-CCceEEeccCCCCCC-CC-CEEEeC
Q 046424          202 LNQLVDVAGGLGANLKSIVSK-YPQLRGINFDLP-HVLKHAP----SC-PGVEHVGGDMFVEVP-KG-QAIFMK  266 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dlp-~vi~~a~----~~-~ri~~~~gD~f~~~P-~~-D~~~lk  266 (266)
                      ...+++||||+|.....+++. -|+.....-|+. +..+...    -+ -+|..+..|++..+- .. |+.+|+
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfN  117 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFN  117 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEEC
Confidence            788999999999988887775 477778888984 4554422    22 468889999998543 33 888764

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=93.61  E-value=0.084  Score=48.13  Aligned_cols=51  Identities=12%  Similarity=0.134  Sum_probs=41.4

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC------CCceEEeccCCC
Q 046424          203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFV  255 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~  255 (266)
                      .+++|++||+|.++..+++...  +++.+|.. +.++.++.+      ++++++.+|..+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            4699999999999999988874  79999984 566666542      579999999876

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG4742 Predicted transcriptional regulator [Transcription]

Probab=93.51  E-value=0.093  Score=45.52  Aligned_cols=67  Identities=16%  Similarity=0.225  Sum_probs=58.9

Q ss_pred             HHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccc
Q 046424           36 TIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYF  115 (266)
Q Consensus        36 ~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l  115 (266)
                      .+....+..|+=.|.++   |.|.+||-..+++    ++..+..-++-|...|++.++         ++.|++|..|..+
T Consensus         9 if~SekRk~lLllL~eg---Pkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~~---------~~~Y~LS~~G~ii   72 (260)
T COG4742           9 LFLSEKRKDLLLLLKEG---PKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQE---------GDRYSLSSLGKII   72 (260)
T ss_pred             HHccHHHHHHHHHHHhC---CCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEec---------CCEEEecchHHHH
Confidence            34556778888899884   9999999999999    888999999999999999987         7899999999988


Q ss_pred             cCC
Q 046424          116 VPN  118 (266)
Q Consensus       116 ~~~  118 (266)
                      +..
T Consensus        73 v~k   75 (260)
T COG4742          73 VEK   75 (260)
T ss_pred             HHH
Confidence            753

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=93.47  E-value=0.16  Score=44.29  Aligned_cols=66  Identities=18%  Similarity=0.116  Sum_probs=47.1

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCC-CeEEEeech-HHHhhCCCC------CCceEEeccCCC-CC--CCCCEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDLP-HVLKHAPSC------PGVEHVGGDMFV-EV--PKGQAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~-~~--P~~D~~~l  265 (266)
                      ....+|+|+|||.|..+..+++...+ -+++.+|+. ..++.++.+      ..|+++.+|... +.  +..|++++
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~  146 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL  146 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence            34578999999999999999988753 578999994 455544331      468888888654 22  22388875

>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]

Probab=93.46  E-value=0.12  Score=41.33  Aligned_cols=57  Identities=18%  Similarity=0.211  Sum_probs=47.3

Q ss_pred             hHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           46 LEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        46 fd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      +......|  ++...+||+.+++    ++..+..+++-|...|+++...        .+.+.+|+.|....
T Consensus        16 y~l~~~~~--~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~~--------y~gi~LT~~G~~~a   72 (154)
T COG1321          16 YELLEEKG--FARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYEP--------YGGVTLTEKGREKA   72 (154)
T ss_pred             HHHHhccC--cccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEec--------CCCeEEChhhHHHH
Confidence            33444444  8999999999999    8999999999999999999872        67799998877544

>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors

Probab=93.40  E-value=0.13  Score=34.74  Aligned_cols=57  Identities=25%  Similarity=0.403  Sum_probs=44.0

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +..|+..+...   +.+..||++.+++    +...+.+.++.|...|++....    .+ ....|.+++
T Consensus         9 ~~~il~~l~~~---~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~----~~-~~~~~~~~~   65 (78)
T cd00090           9 RLRILRLLLEG---PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRR----EG-RRVYYSLTD   65 (78)
T ss_pred             HHHHHHHHHHC---CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEE----ec-cEEEEEeCC
Confidence            34466676664   5899999999999    9999999999999999999752    11 145677765

ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=93.37  E-value=0.076  Score=45.43  Aligned_cols=64  Identities=19%  Similarity=0.340  Sum_probs=49.4

Q ss_pred             CceEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHhhCCCC-----CCceEEeccCCCC-----CCCC--CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQ--LRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFVE-----VPKG--QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~--l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~~-----~P~~--D~~~l  265 (266)
                      ..+|+.||||.|...--|++.+|+  ++....|. |..|+..+++     .|+.....|+-.+     .+.+  |++.|
T Consensus        72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~  150 (264)
T KOG2361|consen   72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL  150 (264)
T ss_pred             hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence            348999999999999999999999  89999998 5677776653     5666667777652     3334  87765

>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length

Probab=93.35  E-value=0.16  Score=36.77  Aligned_cols=69  Identities=25%  Similarity=0.229  Sum_probs=52.5

Q ss_pred             HHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHH----------HhcCCcc-ccccccCCCCcccccee
Q 046424           39 SATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRL----------LASYSFL-TCNLVSNKDGSVQRLYG  107 (266)
Q Consensus        39 ~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~----------L~~~g~l-~~~~~~~~~~~~~~~y~  107 (266)
                      .=++..|+..|...-+++.++.|||..+++    ++..+.-.|+-          |+.+|+| ++..   ..|  ...|+
T Consensus         8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~---~~g--~k~Y~   78 (90)
T PF07381_consen    8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEE---KGG--FKYYR   78 (90)
T ss_pred             HHHHHHHHHHHHHcCCCcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeee---cCC--eeEEE
Confidence            456778999998885579999999999999    88877777654          8899999 4331   123  45799


Q ss_pred             cchhccccc
Q 046424          108 LTPVSKYFV  116 (266)
Q Consensus       108 ~t~~s~~l~  116 (266)
                      +|+.+..++
T Consensus        79 lT~~G~~~~   87 (90)
T PF07381_consen   79 LTEKGKRIA   87 (90)
T ss_pred             eChhhhhHH
Confidence            999876543

The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.

>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure

Probab=93.25  E-value=0.07  Score=38.59  Aligned_cols=65  Identities=20%  Similarity=0.291  Sum_probs=47.5

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           44 GLLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      -|+..|.. |  +....||.+.+ ++    ++..|.+-|+-|...|++++.....  ....-.|++|+.|..|.+
T Consensus         9 ~IL~~l~~-g--~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~--~p~~v~Y~LT~~G~~l~~   74 (90)
T PF01638_consen    9 LILRALFQ-G--PMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPE--VPPRVEYSLTEKGKELLP   74 (90)
T ss_dssp             HHHHHHTT-S--SEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESS--SSSEEEEEE-HHHHHHHH
T ss_pred             HHHHHHHh-C--CCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccC--CCCCCccCCCcCHHHHHH
Confidence            35556666 4  99999999999 89    9999999999999999998763111  000235999998887663

The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=93.16  E-value=0.076  Score=45.97  Aligned_cols=67  Identities=10%  Similarity=0.138  Sum_probs=51.3

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeechH-HHhhCCC-------CCCceEEeccCCCCCC---------CC
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLPH-VLKHAPS-------CPGVEHVGGDMFVEVP---------KG  260 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp~-vi~~a~~-------~~ri~~~~gD~f~~~P---------~~  260 (266)
                      ..+++++|+||.+.|..+..+++..| +.+.+-+|..+ ..+.|+.       .++|+++.||..+-+|         ..
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence            34789999999999999999998865 77888898853 4555543       2799999999877322         23


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++|+
T Consensus       157 fD~iFi  162 (247)
T PLN02589        157 FDFIFV  162 (247)
T ss_pred             ccEEEe
Confidence             88876

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.16  E-value=0.085  Score=44.89  Aligned_cols=66  Identities=14%  Similarity=0.230  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhcchhhHHHHHHH----ccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC
Q 046424          174 NNLFNQSMHNHTTIVMKEILEI----YKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS  242 (266)
Q Consensus       174 ~~~f~~~m~~~~~~~~~~i~~~----~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~  242 (266)
                      ++.|.+.+-..-.+..|..+..    .+ ....++++|+|||+|..+..|..+--.  -+++|+.+ +++.+.+
T Consensus        95 Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~--ltGvDiS~nMl~kA~e  165 (287)
T COG4976          95 AERFDHILVDKLGYSVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADR--LTGVDISENMLAKAHE  165 (287)
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhh--ccCCchhHHHHHHHHh
Confidence            4567666665544444544433    33 334899999999999999998887554  56789975 7777665

>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=93.09  E-value=0.16  Score=33.01  Aligned_cols=42  Identities=24%  Similarity=0.353  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHH
Q 046424           33 LPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRL   83 (266)
Q Consensus        33 ~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~   83 (266)
                      +-.+|.+|+++|-|+.=     ...|..|||+.+|+    ++..+...||-
T Consensus         5 Q~e~L~~A~~~GYfd~P-----R~~tl~elA~~lgi----s~st~~~~LRr   46 (53)
T PF04967_consen    5 QREILKAAYELGYFDVP-----RRITLEELAEELGI----SKSTVSEHLRR   46 (53)
T ss_pred             HHHHHHHHHHcCCCCCC-----CcCCHHHHHHHhCC----CHHHHHHHHHH
Confidence            45689999999999862     26899999999999    77776666654

This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.

>COG4189 Predicted transcriptional regulator [Transcription]

Probab=92.97  E-value=0.16  Score=43.06  Aligned_cols=55  Identities=15%  Similarity=0.286  Sum_probs=49.5

Q ss_pred             HHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccc
Q 046424           34 PMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNL   94 (266)
Q Consensus        34 ~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~   94 (266)
                      -++|...+++.|+..|++.|  |+.+.|||+++|+    +..-+..-+..|...|+++...
T Consensus        17 ~kalaS~vRv~Il~lL~~k~--plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~t   71 (308)
T COG4189          17 LKALASKVRVAILQLLHRKG--PLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTET   71 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeeee
Confidence            46778889999999999997  9999999999999    8888889999999999998654

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=92.90  E-value=0.23  Score=40.79  Aligned_cols=45  Identities=18%  Similarity=0.220  Sum_probs=41.1

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ..|+++|...|  ++|.++||+.+|+    +...++++|..|...|++...
T Consensus        25 ~~Vl~~L~~~g--~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~~   69 (178)
T PRK06266         25 FEVLKALIKKG--EVTDEEIAEQTGI----KLNTVRKILYKLYDARLADYK   69 (178)
T ss_pred             hHHHHHHHHcC--CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence            44889998876  9999999999999    999999999999999999954

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=92.90  E-value=0.38  Score=41.55  Aligned_cols=84  Identities=18%  Similarity=0.197  Sum_probs=60.9

Q ss_pred             HHhcchhh----HHHHHHHccCCCCCceEEEecCCccHHHHHHHH-HCCCCeEEEeech-HHHhhCCCC-------CCce
Q 046424          181 MHNHTTIV----MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVS-KYPQLRGINFDLP-HVLKHAPSC-------PGVE  247 (266)
Q Consensus       181 m~~~~~~~----~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~-~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~  247 (266)
                      |...++..    +..|+.... .+...+|+|.|-|+|.++..|+. -.|.=+.+.+|.- +-.+.|+++       ++|+
T Consensus        71 ~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~  149 (256)
T COG2519          71 MKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVT  149 (256)
T ss_pred             CcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceE
Confidence            66666532    223444444 66789999999999999999997 6788888888883 344455442       6799


Q ss_pred             EEeccCCCC-CCCC-CEEEe
Q 046424          248 HVGGDMFVE-VPKG-QAIFM  265 (266)
Q Consensus       248 ~~~gD~f~~-~P~~-D~~~l  265 (266)
                      +..+|..+. .+.. |++++
T Consensus       150 ~~~~Dv~~~~~~~~vDav~L  169 (256)
T COG2519         150 LKLGDVREGIDEEDVDAVFL  169 (256)
T ss_pred             EEeccccccccccccCEEEE
Confidence            999999994 4445 88876

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=92.85  E-value=0.4  Score=41.37  Aligned_cols=65  Identities=14%  Similarity=0.231  Sum_probs=47.5

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC-----CCCceEEeccCCCCCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS-----CPGVEHVGGDMFVEVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~-----~~ri~~~~gD~f~~~P~~--D~~~l  265 (266)
                      .+.+|+|||||---++.-.....|+.+.+..|+.+ .++.++.     ....+....|.+...|..  |+.+|
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLl  177 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALL  177 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEE
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhH
Confidence            48999999999999999999999999999999964 4444332     267788888999987764  88764

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=92.77  E-value=0.21  Score=41.81  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=30.0

Q ss_pred             CCCCc-eEEEecCCccHHHHHHHHHCCCCeEEEeechH
Q 046424          199 FEGLN-QLVDVAGGLGANLKSIVSKYPQLRGINFDLPH  235 (266)
Q Consensus       199 ~~~~~-~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~  235 (266)
                      +.... +||+||+|+|+.+..+++.+|+++-.==|...
T Consensus        22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~   59 (204)
T PF06080_consen   22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDD   59 (204)
T ss_pred             hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCCh
Confidence            34445 59999999999999999999999875556643

The function of this family is unknown.

>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family

Probab=92.72  E-value=0.17  Score=37.93  Aligned_cols=70  Identities=16%  Similarity=0.244  Sum_probs=48.3

Q ss_pred             HhhChhHHHh--hcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMA--KASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~--~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.++..|.  ...+++.|..+||+.+++    +...+.++++-|...|++.+.+ +..|.+ .-.+.+|+.+..+.
T Consensus        26 ~q~~vL~~l~~~~~~~~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~-~~~D~R-~~~i~lT~~G~~~~   97 (109)
T TIGR01889        26 EELLILYYLGKLENNEGKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKER-SEDDER-KVIISINKEQRSKI   97 (109)
T ss_pred             HHHHHHHHHHhhhccCCcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccC-CcccCC-eEEEEECHHHHHHH
Confidence            3445666665  221138999999999999    9999999999999999999763 112221 22356676665443

This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=92.64  E-value=0.12  Score=47.74  Aligned_cols=64  Identities=6%  Similarity=-0.060  Sum_probs=47.5

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC------CCceEEeccCCCCCC--C-CCEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFVEVP--K-GQAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~~~P--~-~D~~~l  265 (266)
                      ..+|+|++||+|.+++.++...+..+++..|+. ..++.++.+      +.+++..+|..+-++  . .|++.+
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~l  131 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDI  131 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEE
Confidence            358999999999999999998886689999994 566665542      456788888755222  2 387765

>TIGR00122 birA_repr_reg BirA biotin operon repressor domain

Probab=92.63  E-value=0.21  Score=34.00  Aligned_cols=45  Identities=16%  Similarity=0.298  Sum_probs=39.0

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ++.|+..|.+.   +.+..+||+.+|+    +...+.+-++.|...|+....
T Consensus         2 ~~~il~~L~~~---~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~   46 (69)
T TIGR00122         2 PLRLLALLADN---PFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLT   46 (69)
T ss_pred             hHHHHHHHHcC---CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence            45678888864   7899999999999    999999999999999996654

This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.

>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea

Probab=92.51  E-value=0.18  Score=34.31  Aligned_cols=61  Identities=16%  Similarity=0.167  Sum_probs=44.9

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCC-CCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNN-KKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKY  114 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~-~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~  114 (266)
                      |++.|.+.+ .|++..+|++.+.... ..++..++|.|+.|-..|++...   +     .+-+.+|+.+..
T Consensus         3 IL~~L~~~~-~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~---g-----~~G~~iT~~G~~   64 (66)
T PF08461_consen    3 ILRILAESD-KPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKV---G-----RQGRIITEKGLD   64 (66)
T ss_pred             HHHHHHHcC-CCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCcccc---C-----CcccccCHHHHh
Confidence            567887765 4999999999996521 12468899999999999977754   1     344678876653

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.27  E-value=0.6  Score=39.16  Aligned_cols=67  Identities=21%  Similarity=0.213  Sum_probs=49.7

Q ss_pred             chhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeechHHHhhCCCCCCceEEeccCCC
Q 046424          185 TTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLPHVLKHAPSCPGVEHVGGDMFV  255 (266)
Q Consensus       185 ~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~  255 (266)
                      +.+-...+.+.|.-+++...|+|+|+-.|.++.-+.+.-. .-+++.+|+-+.-.    .++|.++.+||+.
T Consensus        29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~   96 (205)
T COG0293          29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITD   96 (205)
T ss_pred             HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccC
Confidence            3333345566665467889999999999999998777654 45689999865432    3669999999987

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=92.22  E-value=0.4  Score=47.83  Aligned_cols=75  Identities=17%  Similarity=0.090  Sum_probs=52.5

Q ss_pred             HHHHHHccCC-CCCceEEEecCCccHHHHHHHHHC------------------------------------------CCC
Q 046424          190 KEILEIYKGF-EGLNQLVDVAGGLGANLKSIVSKY------------------------------------------PQL  226 (266)
Q Consensus       190 ~~i~~~~~~~-~~~~~vvDVGGG~G~~~~~l~~~~------------------------------------------P~l  226 (266)
                      ..++..-. | ++...++|-.||+|+++++.+...                                          +..
T Consensus       179 aa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~  257 (702)
T PRK11783        179 AAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPS  257 (702)
T ss_pred             HHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCc
Confidence            34444433 7 456899999999999999987631                                          123


Q ss_pred             eEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCC----CCEEEe
Q 046424          227 RGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPK----GQAIFM  265 (266)
Q Consensus       227 ~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~----~D~~~l  265 (266)
                      +++++|+ |..++.++.+       ++|++..+|+++ +.|.    .|+++.
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~Ivt  309 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVIS  309 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEE
Confidence            6799998 5677776653       579999999988 4332    277753

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=92.19  E-value=0.17  Score=42.37  Aligned_cols=67  Identities=18%  Similarity=0.186  Sum_probs=45.9

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-------CCCceEEeccCCCCCCC--CCEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-------CPGVEHVGGDMFVEVPK--GQAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-------~~ri~~~~gD~f~~~P~--~D~~~l  265 (266)
                      .....+|+|.-||.|.++..+++..+..+++..|+. ..++.++.       ..+|+.+.+|..+-.+.  .|-++|
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim  175 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIM  175 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEE
Confidence            346789999999999999999998888889999995 45554432       27899999998874333  277665

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=92.14  E-value=0.16  Score=43.07  Aligned_cols=67  Identities=13%  Similarity=0.227  Sum_probs=51.9

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCCC-------CCceEEe-ccCCC---CC-CCC-CEE
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPSC-------PGVEHVG-GDMFV---EV-PKG-QAI  263 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~-gD~f~---~~-P~~-D~~  263 (266)
                      .++.+++++||.+.|..++.++..-| +-+.|-+|.. +-++.|+.+       ++|+.+. ||-.+   .. ... |++
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            45899999999999999999999999 7788999985 455555542       7788888 57766   21 223 888


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      |+
T Consensus       137 FI  138 (219)
T COG4122         137 FI  138 (219)
T ss_pred             EE
Confidence            86

>PRK15431 ferrous iron transport protein FeoC; Provisional

Probab=92.12  E-value=0.23  Score=34.86  Aligned_cols=43  Identities=19%  Similarity=0.287  Sum_probs=39.3

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      |=|.|...|  ..+..+||..++.    +++.++.+|..|+..|-+++.
T Consensus         7 lRd~l~~~g--r~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv   49 (78)
T PRK15431          7 VRDLLALRG--RMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI   49 (78)
T ss_pred             HHHHHHHcC--cccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence            447788887  8999999999999    999999999999999999976

>PRK10870 transcriptional repressor MprA; Provisional

Probab=91.57  E-value=0.27  Score=40.22  Aligned_cols=69  Identities=16%  Similarity=0.153  Sum_probs=49.4

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      ..++-.|...+++++|..|||+.+++    +...+.+++.-|...|+|+... ++.|++ .-...+|+.|..++.
T Consensus        58 ~~iL~~L~~~~~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~-~~~DrR-~~~v~LT~~G~~~~~  126 (176)
T PRK10870         58 FMALITLESQENHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRE-SDNDRR-CLHLQLTEKGHEFLR  126 (176)
T ss_pred             HHHHHHHhcCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHHH
Confidence            34566665433237999999999999    9999999999999999999863 122221 234677877765553

>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family

Probab=91.41  E-value=0.22  Score=33.23  Aligned_cols=34  Identities=24%  Similarity=0.410  Sum_probs=31.8

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +.+..+||+.+++    ++.-+..+++-|...|+|+..
T Consensus        22 ~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~   55 (60)
T PF01325_consen   22 PVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE   55 (60)
T ss_dssp             SBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred             CccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence            9999999999999    999999999999999999976

The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....

>PRK03573 transcriptional regulator SlyA; Provisional

Probab=91.40  E-value=0.37  Score=37.75  Aligned_cols=65  Identities=15%  Similarity=0.156  Sum_probs=47.0

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++..|...+ .+.|..|||+.+++    ++..+.+++.-|...|+|+..+ +..|.+ .-...+|+.|..+.
T Consensus        36 vL~~l~~~~-~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~  100 (144)
T PRK03573         36 TLHNIHQLP-PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQT-CASDRR-AKRIKLTEKAEPLI  100 (144)
T ss_pred             HHHHHHHcC-CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeec-CCCCcC-eeeeEEChHHHHHH
Confidence            456665543 16899999999999    9999999999999999999863 112221 23466777666544

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=91.31  E-value=0.22  Score=44.99  Aligned_cols=69  Identities=16%  Similarity=0.304  Sum_probs=44.7

Q ss_pred             ccCCCCCceEEEecCCccHHHHHHHHHCCCCe-EEEeech----HHHhhCCCC---CCceEEeccCCC---CCCCCCEEE
Q 046424          196 YKGFEGLNQLVDVAGGLGANLKSIVSKYPQLR-GINFDLP----HVLKHAPSC---PGVEHVGGDMFV---EVPKGQAIF  264 (266)
Q Consensus       196 ~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~-~~v~Dlp----~vi~~a~~~---~ri~~~~gD~f~---~~P~~D~~~  264 (266)
                      .++| .+++|+|||-|.|.-+-++-.-+|+++ +++++..    .|++.+..+   .+...-+.|+-.   ++|.+|.|.
T Consensus       109 ~~df-apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~yt  187 (484)
T COG5459         109 VPDF-APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYT  187 (484)
T ss_pred             CCCc-CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceee
Confidence            3445 457799999999999999999999998 5666654    344433322   222223344443   577777775


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       188 l  188 (484)
T COG5459         188 L  188 (484)
T ss_pred             h
Confidence            4

>COG4190 Predicted transcriptional regulator [Transcription]

Probab=91.28  E-value=0.32  Score=37.58  Aligned_cols=52  Identities=25%  Similarity=0.305  Sum_probs=45.7

Q ss_pred             HHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           36 TIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        36 ~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+.+=-.+.+++.|+..+  |.|..|+|+..|-    +...+.|-|+.|...|++...
T Consensus        60 ~vLsp~nleLl~~Ia~~~--P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe  111 (144)
T COG4190          60 RVLSPRNLELLELIAQEE--PASINELAELVGR----DVKNVHRTLSTLADLGLIFFE  111 (144)
T ss_pred             HHhChhHHHHHHHHHhcC--cccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence            344446678899999886  9999999999999    999999999999999999976

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=91.26  E-value=0.27  Score=39.53  Aligned_cols=45  Identities=13%  Similarity=0.050  Sum_probs=40.0

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ..|+++|...+  .+|-+|||+.+|+    +...++++|..|...|++...
T Consensus        17 v~Vl~aL~~~~--~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~~   61 (158)
T TIGR00373        17 GLVLFSLGIKG--EFTDEEISLELGI----KLNEVRKALYALYDAGLADYK   61 (158)
T ss_pred             HHHHHHHhccC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceee
Confidence            45788888666  8999999999999    999999999999999999754

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=91.19  E-value=0.43  Score=39.45  Aligned_cols=44  Identities=18%  Similarity=0.270  Sum_probs=34.6

Q ss_pred             HHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHH
Q 046424          194 EIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPHVL  237 (266)
Q Consensus       194 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~vi  237 (266)
                      +.|.-++.-.+|+|||+..|.++.-..++. |+=.+.++|+-++.
T Consensus        62 dKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~  106 (232)
T KOG4589|consen   62 DKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE  106 (232)
T ss_pred             hhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc
Confidence            334424567999999999999999888775 99888999995443

>PRK11014 transcriptional repressor NsrR; Provisional

Probab=91.05  E-value=0.36  Score=37.87  Aligned_cols=45  Identities=16%  Similarity=0.110  Sum_probs=38.4

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +.+..+||+.+|+    ++..++++|..|...|+++..+  +.    +|.|.+..
T Consensus        25 ~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~--G~----~GG~~l~~   69 (141)
T PRK11014         25 MTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVR--GK----NGGIRLGK   69 (141)
T ss_pred             ccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEec--CC----CCCeeecC
Confidence            7899999999999    9999999999999999999873  11    45677764

>PRK06474 hypothetical protein; Provisional

Probab=90.93  E-value=0.42  Score=39.24  Aligned_cols=76  Identities=11%  Similarity=0.178  Sum_probs=55.1

Q ss_pred             HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424           35 MTIKSATELGLLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK  113 (266)
Q Consensus        35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~  113 (266)
                      .+|.--.++.|++.|...+ .++|+.+|++.+ ++    +..-+.|.|+.|...|+|+........|.....|++++.+.
T Consensus         6 ~~La~p~R~~Il~~L~~~~-~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~   80 (178)
T PRK06474          6 EILMHPVRMKICQVLMRNK-EGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA   80 (178)
T ss_pred             HhhCCHHHHHHHHHHHhCC-CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence            3555667888999998764 249999999999 67    77789999999999999997631100111234588887665


Q ss_pred             cc
Q 046424          114 YF  115 (266)
Q Consensus       114 ~l  115 (266)
                      .+
T Consensus        81 ~~   82 (178)
T PRK06474         81 KI   82 (178)
T ss_pred             ee
Confidence            54

>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element

Probab=90.85  E-value=0.24  Score=35.83  Aligned_cols=46  Identities=26%  Similarity=0.322  Sum_probs=39.2

Q ss_pred             HHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           59 SSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        59 ~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      +.+||+.+++    ++..+.+.++-|...|++...+        +..|.+|+.+..+.
T Consensus         2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~~--------~~~~~lT~~g~~~~   47 (96)
T smart00529        2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYEP--------YRGITLTEKGRRLA   47 (96)
T ss_pred             HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEcC--------CCceEechhHHHHH
Confidence            5789999999    9999999999999999999872        45788888776554

iron dependent repressor

>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain

Probab=90.76  E-value=0.47  Score=34.68  Aligned_cols=43  Identities=12%  Similarity=0.106  Sum_probs=37.9

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLT  109 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t  109 (266)
                      ++|-.|||+.+|+    +...+.|.|.-|...|++....     |  .+.|..|
T Consensus        47 ~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~~-----~--~~~~~~n   89 (95)
T TIGR01610        47 RVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQG-----M--MGIVGVN   89 (95)
T ss_pred             ccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeec-----C--CceeecC
Confidence            8999999999999    9999999999999999999762     1  4778776

This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.

>KOG2730 consensus Methylase [General function prediction only]

Probab=90.74  E-value=0.41  Score=40.54  Aligned_cols=53  Identities=23%  Similarity=0.325  Sum_probs=44.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV  255 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~  255 (266)
                      ....|+|.-||-|...++++.++|.  ++.+|. |--|..|+.+       +||+|+.||+++
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld  154 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD  154 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence            6788999999999999999999985  677887 4466676653       799999999997

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=90.61  E-value=1.1  Score=37.81  Aligned_cols=65  Identities=9%  Similarity=0.117  Sum_probs=49.8

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-----HHHhhCCC---CCCceEEeccCCCCCCC--C-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-----HVLKHAPS---CPGVEHVGGDMFVEVPK--G-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-----~vi~~a~~---~~ri~~~~gD~f~~~P~--~-D~~~l  265 (266)
                      ....+.||||-++.+.+.+++.+|...++..|.-     .++...+.   .+||+..-+|-|.++-.  . |++++
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivI   91 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVI   91 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEE
Confidence            3455999999999999999999999999988883     34443333   38999999999986443  2 66653

>COG3432 Predicted transcriptional regulator [Transcription]

Probab=90.58  E-value=0.15  Score=37.30  Aligned_cols=62  Identities=15%  Similarity=0.264  Sum_probs=47.6

Q ss_pred             hhHHHh--hcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           45 LLEIMA--KASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        45 lfd~L~--~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      +||+|.  ..|  +....-|.-.+++    +-......++.|+..|++....    +| ....|.+|+.|..|+.
T Consensus        20 i~dIL~~~~~~--~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~~----~~-~~~~y~lT~KG~~fle   83 (95)
T COG3432          20 IFDILKAISEG--GIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQD----NG-RRKVYELTEKGKRFLE   83 (95)
T ss_pred             HHHHHHHhcCC--CCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEecc----CC-ccceEEEChhHHHHHH
Confidence            566666  333  7888889999999    9999999999999999666541    11 1337999999987764

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=90.34  E-value=0.34  Score=39.98  Aligned_cols=61  Identities=16%  Similarity=0.217  Sum_probs=40.3

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeech--------HHHhhCCCCCCceEEeccCCC-CCCCC-CEEEe
Q 046424          204 QLVDVAGGLGANLKSIVSKYPQLRGINFDLP--------HVLKHAPSCPGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       204 ~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp--------~vi~~a~~~~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      +++|||.|.|.=++-++=.+|+++++++|--        .++.... .++++++.+..=+ ..+.. |+++.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L~nv~v~~~R~E~~~~~~~fd~v~a  121 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG-LSNVEVINGRAEEPEYRESFDVVTA  121 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHHTTTTT-EEEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC-CCCEEEEEeeecccccCCCccEEEe
Confidence            8999999999999999999999999999983        2332222 1456666554444 23333 66553

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=90.31  E-value=0.3  Score=41.35  Aligned_cols=33  Identities=15%  Similarity=0.310  Sum_probs=30.8

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP  234 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp  234 (266)
                      ..+++|||.|.|.=++-++=.+|+++++++|.-
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~  100 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESL  100 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccC
Confidence            689999999999999999999999999999973

>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional

Probab=90.24  E-value=0.32  Score=41.19  Aligned_cols=60  Identities=22%  Similarity=0.253  Sum_probs=46.9

Q ss_pred             HHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           47 EIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        47 d~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      .++.+..  .+|..+||+.+++    +...+.|.|+-|...|+++.... + .   ...+++|+.+..++.
T Consensus        14 g~l~~~~--~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~~-~-r---~~~v~LTekG~~ll~   73 (217)
T PRK14165         14 GAVNNTV--KISSSEFANHTGT----SSKTAARILKQLEDEGYITRTIV-P-R---GQLITITEKGLDVLY   73 (217)
T ss_pred             hccCCCC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEEc-C-C---ceEEEECHHHHHHHH
Confidence            3444433  6999999999999    99999999999999999997631 1 1   567888888776553

>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional

Probab=90.19  E-value=0.39  Score=38.28  Aligned_cols=47  Identities=17%  Similarity=0.286  Sum_probs=42.8

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|.++|..+|  ..|..+||+++|+    ++..+.+=++-|...|++...
T Consensus        10 ~D~~Il~~Lq~d~--R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~~   56 (153)
T PRK11179         10 LDRGILEALMENA--RTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITGT   56 (153)
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeE
Confidence            5778999999887  8999999999999    999999999999999999843

>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function

Probab=90.15  E-value=0.36  Score=35.13  Aligned_cols=46  Identities=22%  Similarity=0.205  Sum_probs=41.6

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ++.|+..|...|  |-.+.-||..+++    +...+...++-|..+|++++.
T Consensus         9 ~~~IL~hl~~~~--~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~   54 (92)
T PF10007_consen    9 DLKILQHLKKAG--PDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV   54 (92)
T ss_pred             HHHHHHHHHHHC--CCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence            456778888876  8999999999999    999999999999999999987

>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors

Probab=90.05  E-value=0.26  Score=36.61  Aligned_cols=43  Identities=16%  Similarity=0.353  Sum_probs=33.9

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      |+++|...|  .++-++||+.+++    ++..++++|..|...|++...
T Consensus        18 Il~~L~~~~--~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~~   60 (105)
T PF02002_consen   18 ILDALLRKG--ELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSYR   60 (105)
T ss_dssp             HHHHHHHH----B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EEE
T ss_pred             HHHHHHHcC--CcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEEE
Confidence            688888776  8999999999999    999999999999999999754

Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.

>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=89.97  E-value=0.23  Score=28.66  Aligned_cols=31  Identities=19%  Similarity=0.334  Sum_probs=25.7

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFL   90 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l   90 (266)
                      |+|-+|||+.+|+    ...-+.|+|.-|...|++
T Consensus         2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI   32 (32)
T PF00325_consen    2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI   32 (32)
T ss_dssp             E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred             CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence            5788999999999    999999999999988874

These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=89.79  E-value=0.55  Score=36.00  Aligned_cols=50  Identities=12%  Similarity=0.217  Sum_probs=45.1

Q ss_pred             HHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           38 KSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        38 ~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +..+...|.+...++|  .+|..|++..+|+    +-..+.+.++-|++.|-|...
T Consensus        10 r~eLk~rIvElVRe~G--RiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~~   59 (127)
T PF06163_consen   10 REELKARIVELVREHG--RITIKQLVAKTGA----SRNTVKRYLRELVARGDLYRH   59 (127)
T ss_pred             HHHHHHHHHHHHHHcC--CccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeC
Confidence            4556778999999998  9999999999999    999999999999999999864

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=89.63  E-value=1.7  Score=35.35  Aligned_cols=70  Identities=21%  Similarity=0.358  Sum_probs=51.4

Q ss_pred             chhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCC-CCCCceEEeccCCC
Q 046424          185 TTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAP-SCPGVEHVGGDMFV  255 (266)
Q Consensus       185 ~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~-~~~ri~~~~gD~f~  255 (266)
                      +...++.+...++ |....-|+.+|.|+|.+.++|+++ .++-..+.++. |+-+.... ..+.++++.||-|.
T Consensus        33 Ss~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~  105 (194)
T COG3963          33 SSILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFD  105 (194)
T ss_pred             cHHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhh
Confidence            3345566777787 888889999999999999999886 45555555555 44444443 35888899999886

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=89.56  E-value=0.9  Score=40.29  Aligned_cols=65  Identities=25%  Similarity=0.317  Sum_probs=53.1

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHhhCCCC-----CCceEEeccCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLR-GINFDL-PHVLKHAPSC-----PGVEHVGGDMFV  255 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~-~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~  255 (266)
                      ..+++.+. ......+||+-=|.|.++..|++++|+.. .+++|. |++++.+++.     +|++++.++|-+
T Consensus        13 ~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~   84 (314)
T COG0275          13 NEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN   84 (314)
T ss_pred             HHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence            34556655 45568999999999999999999999887 899999 5688887752     699999998765

>PRK11169 leucine-responsive transcriptional regulator; Provisional

Probab=89.19  E-value=0.44  Score=38.42  Aligned_cols=47  Identities=17%  Similarity=0.273  Sum_probs=43.0

Q ss_pred             HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 046424           40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTC   92 (266)
Q Consensus        40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~   92 (266)
                      ..+..|+.+|..++  .+|..+||+++|+    ++..+.+=++-|...|+++.
T Consensus        14 ~~D~~IL~~Lq~d~--R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~   60 (164)
T PRK11169         14 RIDRNILNELQKDG--RISNVELSKRVGL----SPTPCLERVRRLERQGFIQG   60 (164)
T ss_pred             HHHHHHHHHhccCC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence            36788999999887  8999999999999    99999999999999999984

>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators

Probab=89.18  E-value=0.85  Score=30.03  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=30.4

Q ss_pred             CCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           57 LSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        57 ~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .|..+||+.+++    +...+.+.+..|...|+++..
T Consensus        26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~~   58 (66)
T cd07377          26 PSERELAEELGV----SRTTVREALRELEAEGLVERR   58 (66)
T ss_pred             CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence            459999999999    999999999999999999865

This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is

>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Probab=89.15  E-value=0.77  Score=38.64  Aligned_cols=59  Identities=25%  Similarity=0.372  Sum_probs=42.7

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceec
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGL  108 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~  108 (266)
                      |.++|.. +..+.|.+|+|+++|+    +..-.+|-|.+|++.|+++..-.-+.-|+....|..
T Consensus       163 i~~~~~~-~~~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~i~yG~vGRP~r~Y~~  221 (224)
T COG4565         163 VREALKE-PDQELTAEELAQALGI----SRVTARRYLEYLVSNGILEAEIHYGKVGRPERRYRL  221 (224)
T ss_pred             HHHHHhC-cCCccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEEeeccccCCcceeeec
Confidence            5566663 2248999999999999    888999999999999999965322222444444544

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=88.89  E-value=0.92  Score=37.58  Aligned_cols=60  Identities=17%  Similarity=0.143  Sum_probs=45.4

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC------CCceEEeccCCC-CCCCCCEEE
Q 046424          203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFV-EVPKGQAIF  264 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~-~~P~~D~~~  264 (266)
                      .++.|+|.|+|.++.-.+++  .=+++.+++. .....+.++      ..++++.||-.+ ++..+|+++
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvi  101 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVI  101 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeH
Confidence            57889999999988776666  4478888874 455555553      579999999999 785568764

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.81  E-value=0.66  Score=39.04  Aligned_cols=66  Identities=15%  Similarity=0.109  Sum_probs=43.5

Q ss_pred             CCCCceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhhCCCC----------------CCceEEeccCCCCCC-
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSK--YPQLRGINFDL-PHVLKHAPSC----------------PGVEHVGGDMFVEVP-  258 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~--~P~l~~~v~Dl-p~vi~~a~~~----------------~ri~~~~gD~f~~~P-  258 (266)
                      +....++||||+|+|.+..-++..  -|....+++|+ |++++.++++                .++.++.||-..-.| 
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e  159 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE  159 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence            345678999999999877665543  23332356665 7777765431                578999999988433 


Q ss_pred             CC--CEEE
Q 046424          259 KG--QAIF  264 (266)
Q Consensus       259 ~~--D~~~  264 (266)
                      .+  |.|.
T Consensus       160 ~a~YDaIh  167 (237)
T KOG1661|consen  160 QAPYDAIH  167 (237)
T ss_pred             cCCcceEE
Confidence            33  6654

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=88.74  E-value=2  Score=37.24  Aligned_cols=89  Identities=16%  Similarity=0.220  Sum_probs=53.6

Q ss_pred             HHHHHHHhcchhh----HHHHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeechH-HHhhCCC-------
Q 046424          176 LFNQSMHNHTTIV----MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDLPH-VLKHAPS-------  242 (266)
Q Consensus       176 ~f~~~m~~~~~~~----~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dlp~-vi~~a~~-------  242 (266)
                      .|...|...++..    +..|+...+ .....+||+.|.|+|.++..|++. .|+=+.+-+|.-+ -.+.|++       
T Consensus        12 ~~~~~l~rrtQIiYpkD~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl   90 (247)
T PF08704_consen   12 LWTLSLPRRTQIIYPKDISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL   90 (247)
T ss_dssp             HHHHTS-SSS----HHHHHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred             HHHHhccCCcceeeCchHHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC
Confidence            3555555555532    223455555 667799999999999999999964 7888888888843 3333333       


Q ss_pred             CCCceEEeccCCC-CCC----CC-CEEEe
Q 046424          243 CPGVEHVGGDMFV-EVP----KG-QAIFM  265 (266)
Q Consensus       243 ~~ri~~~~gD~f~-~~P----~~-D~~~l  265 (266)
                      .+.|++..+|.-+ .++    .. |+++|
T Consensus        91 ~~~v~~~~~Dv~~~g~~~~~~~~~DavfL  119 (247)
T PF08704_consen   91 DDNVTVHHRDVCEEGFDEELESDFDAVFL  119 (247)
T ss_dssp             CTTEEEEES-GGCG--STT-TTSEEEEEE
T ss_pred             CCCceeEecceecccccccccCcccEEEE
Confidence            2579999999865 343    33 88886

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=88.71  E-value=0.62  Score=29.99  Aligned_cols=40  Identities=15%  Similarity=0.370  Sum_probs=32.9

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCC
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYS   88 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g   88 (266)
                      .|+..|.+++ +++|.++||+.+++    +.+-+.+-+..|...|
T Consensus         4 ~il~~L~~~~-~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~   43 (55)
T PF08279_consen    4 QILKLLLESK-EPITAKELAEELGV----SRRTIRRDIKELREWG   43 (55)
T ss_dssp             HHHHHHHHTT-TSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcC-CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCC
Confidence            4667774433 27999999999999    9999999999999999

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain

Probab=88.43  E-value=0.45  Score=45.01  Aligned_cols=70  Identities=13%  Similarity=0.190  Sum_probs=58.1

Q ss_pred             HHhhChhHHHhhcCCCC-CCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccCC
Q 046424           40 ATELGLLEIMAKASPTQ-LSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPN  118 (266)
Q Consensus        40 a~~lglfd~L~~~g~~~-~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~  118 (266)
                      +.+..|+..|...+  + .+..+||+.+|+    +...+.+.+..|.+.|+++.....      ...|.+|+.+...+.+
T Consensus         3 ~~e~~iL~~l~~~~--~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~~~------~~~~~LT~eG~~~l~~   70 (492)
T PLN02853          3 MAEEALLGALSNNE--EISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQDIK------RETWVLTEEGKKYAAE   70 (492)
T ss_pred             hHHHHHHHHHHhcC--CCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEEE------EEEEEECHHHHHHHHc
Confidence            45677888888754  5 899999999999    999999999999999999866321      6789999999988876


Q ss_pred             CCC
Q 046424          119 KDG  121 (266)
Q Consensus       119 ~~~  121 (266)
                      ..|
T Consensus        71 G~P   73 (492)
T PLN02853         71 GSP   73 (492)
T ss_pred             CCH
Confidence            543

>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A

Probab=88.41  E-value=0.44  Score=32.78  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=32.6

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ++|-++||..+|+    +...+.|+|+.|...|+++..
T Consensus        28 ~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~~   61 (76)
T PF13545_consen   28 PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEVK   61 (76)
T ss_dssp             ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEc
Confidence            7899999999999    999999999999999999976

...

>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional

Probab=88.36  E-value=0.41  Score=45.65  Aligned_cols=68  Identities=18%  Similarity=0.207  Sum_probs=55.6

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccCCCC
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKD  120 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~  120 (266)
                      .+..|+..|...+  +.|..+||+.+++    ++..+.++++-|.+.|+++.... .     ...|.+|+.|+.++....
T Consensus         7 ~e~~vL~~L~~~~--~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~~-~-----~~~i~LTeeG~~~~~~g~   74 (489)
T PRK04172          7 NEKKVLKALKELK--EATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEER-V-----EEVYVLTEEGKKYAEEGL   74 (489)
T ss_pred             HHHHHHHHHHhCC--CCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEee-e-----EEEEEECHHHHHHHHhcC
Confidence            4556777787765  8999999999999    99999999999999999997621 1     467999999998876543

>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor

Probab=88.31  E-value=0.67  Score=29.88  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=31.6

Q ss_pred             CC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           56 QL-SSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        56 ~~-t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+ |..+||+.+++    +...+++.+..|...|++...
T Consensus        19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~~   53 (60)
T smart00345       19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQRR   53 (60)
T ss_pred             cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            46 89999999999    999999999999999999865

>PHA02943 hypothetical protein; Provisional

Probab=88.29  E-value=0.66  Score=36.81  Aligned_cols=43  Identities=19%  Similarity=0.159  Sum_probs=38.4

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .|++.| ..|  +.|..|||+++|+    +-...+-.|..|...|.+.+.
T Consensus        15 eILE~L-k~G--~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV   57 (165)
T PHA02943         15 KTLRLL-ADG--CKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKV   57 (165)
T ss_pred             HHHHHH-hcC--CccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEE
Confidence            467778 445  8999999999999    999999999999999999987

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=88.04  E-value=1  Score=39.48  Aligned_cols=44  Identities=20%  Similarity=0.314  Sum_probs=33.6

Q ss_pred             HHccCCCCCceEEEecCCccHHHHHHHHHCCCCe-EEEeechH-HHh
Q 046424          194 EIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLR-GINFDLPH-VLK  238 (266)
Q Consensus       194 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~-~~v~Dlp~-vi~  238 (266)
                      ..+++| .+.+|+|+|+|.|..+-++.+.+|++. ++++|..+ ..+
T Consensus        27 ~r~p~f-~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~   72 (274)
T PF09243_consen   27 KRLPDF-RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLE   72 (274)
T ss_pred             HhCcCC-CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHH
Confidence            334435 568999999999999999999999665 68888853 444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks

Probab=87.53  E-value=0.65  Score=32.32  Aligned_cols=49  Identities=18%  Similarity=0.236  Sum_probs=44.1

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..+++.+..++.++.+..||+..+|.    +++.+...+..|...|++.+.
T Consensus         3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k~   51 (75)
T PF04182_consen    3 IQYCLLERIARSRYNGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVKQ   51 (75)
T ss_pred             hHHHHHHHHHhcCCCCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEEE
Confidence            4567888898876678999999999999    999999999999999999976

This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.

>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators

Probab=87.39  E-value=0.79  Score=34.38  Aligned_cols=51  Identities=22%  Similarity=0.313  Sum_probs=39.9

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCC-CCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNK-KAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~-~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +.-|++.|.+.+ .+.|++||.+.+.-..| .+..-+.|.|+.|+..|++.+.
T Consensus         3 R~~Il~~l~~~~-~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~   54 (116)
T cd07153           3 RLAILEVLLESD-GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREI   54 (116)
T ss_pred             HHHHHHHHHhCC-CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            345788887753 48999999999842111 2778899999999999999986

Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.

>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria

Probab=87.36  E-value=0.75  Score=31.15  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=29.4

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      |-|+.|||+.+|++   ++..+...|+.|...|+++..
T Consensus        25 ~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~   59 (65)
T PF01726_consen   25 PPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD   59 (65)
T ss_dssp             ---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred             CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence            67999999999992   478999999999999999986

The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.

>COG1846 MarR Transcriptional regulators [Transcription]

Probab=87.16  E-value=0.78  Score=34.12  Aligned_cols=71  Identities=17%  Similarity=0.216  Sum_probs=50.8

Q ss_pred             HHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           39 SATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        39 ~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      .-.+..++..|...+  +.+..+||+.+++    +...+.++++-|...|++.... +..|++ .-.+.+|+.+..+..
T Consensus        21 t~~q~~~L~~l~~~~--~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~-~~~DrR-~~~l~lT~~G~~~~~   91 (126)
T COG1846          21 TPPQYQVLLALYEAG--GITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLR-DPEDRR-AVLVRLTEKGRELLE   91 (126)
T ss_pred             CHHHHHHHHHHHHhC--CCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecC-Cccccc-eeeEEECccHHHHHH
Confidence            345666777777765  4444999999999    9999999999999999999873 111211 234677776665543

>PRK13777 transcriptional regulator Hpr; Provisional

Probab=87.12  E-value=0.94  Score=37.44  Aligned_cols=65  Identities=20%  Similarity=0.083  Sum_probs=48.9

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .|+..|...+  ++|..+||+.+++    +..-+.+++.-|...|++.... +..|.+ .-...+|+.|..+.
T Consensus        49 ~iL~~L~~~~--~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~-~~~DrR-~~~I~LTekG~~l~  113 (185)
T PRK13777         49 HILWIAYHLK--GASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSK-KEDDKR-NTYIELTEKGEELL  113 (185)
T ss_pred             HHHHHHHhCC--CcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence            5677777765  8999999999999    8888999999999999999762 112221 23366777776554

>COG1733 Predicted transcriptional regulators [Transcription]

Probab=87.04  E-value=1.8  Score=33.15  Aligned_cols=81  Identities=15%  Similarity=0.188  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhcCCcccccccc
Q 046424           18 EQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLP-TNNKKAPIILDRMLRLLASYSFLTCNLVS   96 (266)
Q Consensus        18 ~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~-~~~~~~~~~l~rlLr~L~~~g~l~~~~~~   96 (266)
                      .-+.+.+.+++.+-|..-.|+...+          |  +....||-+.++ +    ++.-|.+-|+.|...|++.+..-.
T Consensus        10 ~c~~~~~l~~ig~kW~~lIl~~L~~----------g--~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~   73 (120)
T COG1733          10 PCPVEEALEVIGGKWTLLILRDLFD----------G--PKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYP   73 (120)
T ss_pred             CCCHHHHHHHHcCccHHHHHHHHhc----------C--CCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecC
Confidence            3457777888888887777765433          4  889999999998 9    999999999999999999976210


Q ss_pred             CCCCccccceecchhccccc
Q 046424           97 NKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        97 ~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ...  ..-.|++|+.+..|.
T Consensus        74 ~~P--prveY~LT~~G~~L~   91 (120)
T COG1733          74 EEP--PRVEYRLTEKGRDLL   91 (120)
T ss_pred             CCC--ceeEEEEhhhHHHHH
Confidence            000  134588998877555

>COG1522 Lrp Transcriptional regulators [Transcription]

Probab=86.54  E-value=0.91  Score=35.76  Aligned_cols=47  Identities=15%  Similarity=0.309  Sum_probs=42.9

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|+..|..++  +.+..+||+++|+    ++..+.+-++-|...|++...
T Consensus         9 ~D~~IL~~L~~d~--r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~~   55 (154)
T COG1522           9 IDRRILRLLQEDA--RISNAELAERVGL----SPSTVLRRIKRLEEEGVIKGY   55 (154)
T ss_pred             HHHHHHHHHHHhC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceeeE
Confidence            5677899999887  8999999999999    999999999999999999965

>PF14394 DUF4423: Domain of unknown function (DUF4423)

Probab=86.52  E-value=1.2  Score=36.39  Aligned_cols=64  Identities=16%  Similarity=0.051  Sum_probs=49.0

Q ss_pred             hhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC--CCCCCCCcchHHHHHHHHhcCCccccccccCCCCcccccee
Q 046424           30 GAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQL--PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYG  107 (266)
Q Consensus        30 g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~--~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~  107 (266)
                      ..|...+++..+.+.        + +..+..+||+.|  ++    +...++.-|..|...|++++..        +|.|.
T Consensus        22 ~~W~~~~ir~l~~l~--------~-~~~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k~~--------~g~y~   80 (171)
T PF14394_consen   22 SSWYHPAIRELLPLM--------P-FAPDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKKDG--------DGKYV   80 (171)
T ss_pred             hhhHHHHHHHHhhcC--------C-CCCCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEECC--------CCcEE
Confidence            455566666554432        2 133899999999  99    9999999999999999999872        67999


Q ss_pred             cchhccc
Q 046424          108 LTPVSKY  114 (266)
Q Consensus       108 ~t~~s~~  114 (266)
                      .|.-+..
T Consensus        81 ~t~~~l~   87 (171)
T PF14394_consen   81 QTDKSLT   87 (171)
T ss_pred             Eecceee
Confidence            9985544

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=85.93  E-value=8.5  Score=33.74  Aligned_cols=66  Identities=14%  Similarity=0.132  Sum_probs=49.3

Q ss_pred             CCceEEEecCCccH----HHHHHHHHCC-----CCeEEEeech-HHHhhCCCC---------------------------
Q 046424          201 GLNQLVDVAGGLGA----NLKSIVSKYP-----QLRGINFDLP-HVLKHAPSC---------------------------  243 (266)
Q Consensus       201 ~~~~vvDVGGG~G~----~~~~l~~~~P-----~l~~~v~Dlp-~vi~~a~~~---------------------------  243 (266)
                      +.-+|--.||++|.    .++.+.+.+|     .++.+.-|+. .+++.|+.-                           
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            47789999999998    6666778887     4677888985 466666430                           


Q ss_pred             --------CCceEEeccCCCC--CCCC-CEEEeC
Q 046424          244 --------PGVEHVGGDMFVE--VPKG-QAIFMK  266 (266)
Q Consensus       244 --------~ri~~~~gD~f~~--~P~~-D~~~lk  266 (266)
                              ..|+|..+|++++  .+.. |+|+-+
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCR  209 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCR  209 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEc
Confidence                    4689999999994  4445 998753

>TIGR00498 lexA SOS regulatory protein LexA

Probab=85.55  E-value=1.3  Score=36.70  Aligned_cols=49  Identities=16%  Similarity=0.245  Sum_probs=38.4

Q ss_pred             HhhChhHHHhhc---CCCCCCHHHHHhhCCCCCCCC-cchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKA---SPTQLSSSEIASQLPTNNKKA-PIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~---g~~~~t~~elA~~~~~~~~~~-~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|++.|.+.   +.-+.|..|||+.+|+    + ...+.+.|+.|...|+++..
T Consensus         7 ~q~~iL~~l~~~~~~~~~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~~   59 (199)
T TIGR00498         7 RQQEVLDLIRAHIESTGYPPSIREIARAVGL----RSPSAAEEHLKALERKGYIERD   59 (199)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEecC
Confidence            344555566531   2136899999999999    7 78999999999999999986

LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=85.55  E-value=1.9  Score=38.96  Aligned_cols=78  Identities=15%  Similarity=0.146  Sum_probs=46.7

Q ss_pred             HHHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCCC---------
Q 046424          174 NNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPSC---------  243 (266)
Q Consensus       174 ~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~~---------  243 (266)
                      .+.||.++.+.-.   ...++....-....+|||+|||.|.-+.-...+.+. ..+++|+.. .|+.|+.+         
T Consensus        38 lR~fNNwvKs~LI---~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~-~~vg~Dis~~si~ea~~Ry~~~~~~~~  113 (331)
T PF03291_consen   38 LRNFNNWVKSVLI---QKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIK-HYVGIDISEESIEEARERYKQLKKRNN  113 (331)
T ss_dssp             HHHHHHHHHHHHH---HHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHhHHHHHHHH---HHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCC-EEEEEeCCHHHHHHHHHHHHHhccccc
Confidence            5778877776332   111221110115689999999999999888887443 468899964 55555431         


Q ss_pred             -------CCceEEeccCCC
Q 046424          244 -------PGVEHVGGDMFV  255 (266)
Q Consensus       244 -------~ri~~~~gD~f~  255 (266)
                             -...|+.+|-|.
T Consensus       114 ~~~~~~~f~a~f~~~D~f~  132 (331)
T PF03291_consen  114 SKQYRFDFIAEFIAADCFS  132 (331)
T ss_dssp             -HTSEECCEEEEEESTTCC
T ss_pred             cccccccchhheecccccc
Confidence                   134668888886

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK10742 putative methyltransferase; Provisional

Probab=85.24  E-value=1.9  Score=37.36  Aligned_cols=73  Identities=14%  Similarity=0.229  Sum_probs=53.1

Q ss_pred             HHHHHHccCCCCCc--eEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhC-C-------------C--CCCceEEec
Q 046424          190 KEILEIYKGFEGLN--QLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHA-P-------------S--CPGVEHVGG  251 (266)
Q Consensus       190 ~~i~~~~~~~~~~~--~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a-~-------------~--~~ri~~~~g  251 (266)
                      +.+++.+. .++..  +|+|.=+|.|..+..++.+  +++++.+|...++... +             .  ..||+++.+
T Consensus        76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            35666665 55433  9999999999999999998  7779999996544331 1             0  147999999


Q ss_pred             cCCC---CCCCC-CEEEe
Q 046424          252 DMFV---EVPKG-QAIFM  265 (266)
Q Consensus       252 D~f~---~~P~~-D~~~l  265 (266)
                      |..+   ..+.. |+|+|
T Consensus       153 da~~~L~~~~~~fDVVYl  170 (250)
T PRK10742        153 SSLTALTDITPRPQVVYL  170 (250)
T ss_pred             cHHHHHhhCCCCCcEEEE
Confidence            8877   34444 99986

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=85.14  E-value=0.99  Score=27.70  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=25.0

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHH
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRM   80 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rl   80 (266)
                      ++..|...|..++  ..+..+||+.+|+    ++..+.+=
T Consensus         4 ~D~~Il~~Lq~d~--r~s~~~la~~lgl----S~~~v~~R   37 (42)
T PF13404_consen    4 LDRKILRLLQEDG--RRSYAELAEELGL----SESTVRRR   37 (42)
T ss_dssp             HHHHHHHHHHH-T--TS-HHHHHHHHTS-----HHHHHHH
T ss_pred             HHHHHHHHHHHcC--CccHHHHHHHHCc----CHHHHHHH
Confidence            4667889998886  8999999999999    77655443

...

>PRK05638 threonine synthase; Validated

Probab=84.89  E-value=0.98  Score=42.49  Aligned_cols=64  Identities=17%  Similarity=0.258  Sum_probs=48.7

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCC--CCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLP--TNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~--~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++.|+..|.+.   +.+..||++.++  +    +...+.+.|+.|...|+|+....   .|+ .-.|++|+.+..++
T Consensus       373 r~~IL~~L~~~---~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~---~g~-~~~Y~Lt~~g~~~l  438 (442)
T PRK05638        373 KLEILKILSER---EMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYR---KGR-RVYYKLTEKGRRLL  438 (442)
T ss_pred             HHHHHHHHhhC---CccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeec---CCC-cEEEEECcHHHHHH
Confidence            34477777764   899999999998  7    88899999999999999985311   121 34599998877554

>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional

Probab=84.78  E-value=1.1  Score=42.69  Aligned_cols=70  Identities=16%  Similarity=0.192  Sum_probs=57.5

Q ss_pred             HHhhChhHHHhh-cCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccCC
Q 046424           40 ATELGLLEIMAK-ASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPN  118 (266)
Q Consensus        40 a~~lglfd~L~~-~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~  118 (266)
                      ..+..|+..|.. .+  ..+..+||+.+|+    +...+.+.+..|.+.|+++.....      ...|.+|+.+..++.+
T Consensus         6 ~~e~~iL~~l~~~~~--~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~~~------~~~~~LT~eG~~~~~~   73 (494)
T PTZ00326          6 LEENTILSKLESENE--IVNSLALAESLNI----DHQKVVGAIKSLESANYITTEMKK------SNTWTLTEEGEDYLKN   73 (494)
T ss_pred             HHHHHHHHHHHhcCC--CCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEEE------EEEEEECHHHHHHHHc
Confidence            355667888876 33  7999999999999    999999999999999999866321      6789999999988876


Q ss_pred             CCC
Q 046424          119 KDG  121 (266)
Q Consensus       119 ~~~  121 (266)
                      ..|
T Consensus        74 G~P   76 (494)
T PTZ00326         74 GSP   76 (494)
T ss_pred             CCH
Confidence            554

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=84.59  E-value=1.5  Score=38.37  Aligned_cols=56  Identities=29%  Similarity=0.415  Sum_probs=31.5

Q ss_pred             CCceEEEecCCccH--HHHHH-HHHCCCCeEEEeechH-HHhhCCC----CCC--ceEEeccCCCC
Q 046424          201 GLNQLVDVAGGLGA--NLKSI-VSKYPQLRGINFDLPH-VLKHAPS----CPG--VEHVGGDMFVE  256 (266)
Q Consensus       201 ~~~~vvDVGGG~G~--~~~~l-~~~~P~l~~~v~Dlp~-vi~~a~~----~~r--i~~~~gD~f~~  256 (266)
                      +...+||||||.=+  ..-++ .+..|+.+++=+|... |+..++.    +++  ..++.+|+.++
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p  133 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP  133 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence            78999999999654  44444 4459999999999855 6666653    345  89999999873

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG1378 Predicted transcriptional regulators [Transcription]

Probab=84.07  E-value=1.9  Score=37.28  Aligned_cols=59  Identities=14%  Similarity=0.137  Sum_probs=46.3

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK  113 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~  113 (266)
                      ..+.-+|-..|  +.|+.||++.+|+    +...+..+|+-|...|+++...     |+ ...|+.-+...
T Consensus        19 a~vY~aLl~~g--~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~~-----g~-P~~y~av~p~~   77 (247)
T COG1378          19 AKVYLALLCLG--EATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVIE-----GR-PKKYRAVPPEE   77 (247)
T ss_pred             HHHHHHHHHhC--CccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEeeC-----CC-CceEEeCCHHH
Confidence            34555666656  9999999999999    8889999999999999999762     21 56787765443

>PRK13509 transcriptional repressor UlaR; Provisional

Probab=83.74  E-value=1.3  Score=38.29  Aligned_cols=46  Identities=20%  Similarity=0.206  Sum_probs=41.6

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ...|.+.|.+.|  ..++.|||+.+|+    ++.-++|-|+.|...|++.+.
T Consensus         7 ~~~Il~~l~~~~--~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r~   52 (251)
T PRK13509          7 HQILLELLAQLG--FVTVEKVIERLGI----SPATARRDINKLDESGKLKKV   52 (251)
T ss_pred             HHHHHHHHHHcC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            345788998876  8999999999999    999999999999999999976

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=83.00  E-value=0.67  Score=38.18  Aligned_cols=64  Identities=17%  Similarity=0.199  Sum_probs=44.5

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCCCC---C---CCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFVE---V---PKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~~---~---P~~-D~~~l  265 (266)
                      ...++||+=+|+|.++.+.+.+.-. +++.+|.. ..+..++.+       ++++.+.+|.+..   .   ... |++++
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            3589999999999999999999754 67888885 455554432       5789999997762   1   234 99886

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=82.62  E-value=3.7  Score=33.57  Aligned_cols=80  Identities=19%  Similarity=0.226  Sum_probs=50.3

Q ss_pred             HHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC----C-----CCc
Q 046424          176 LFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS----C-----PGV  246 (266)
Q Consensus       176 ~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~----~-----~ri  246 (266)
                      .++..+...+...-..+.+.+....+...||-+|||-=.....+...+++++.+=+|+|+|++.-+.    .     ...
T Consensus        53 ~~~~~~~~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~  132 (183)
T PF04072_consen   53 GINRGYAARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANY  132 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEES
T ss_pred             HHHhHHHHHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcce
Confidence            3444444444443222223221123566999999999999999999999999999999999885332    1     236


Q ss_pred             eEEeccCCC
Q 046424          247 EHVGGDMFV  255 (266)
Q Consensus       247 ~~~~gD~f~  255 (266)
                      ++++.|+.+
T Consensus       133 ~~v~~Dl~~  141 (183)
T PF04072_consen  133 RYVPADLRD  141 (183)
T ss_dssp             SEEES-TTS
T ss_pred             eEEeccccc
Confidence            689999986

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species

Probab=82.47  E-value=1.7  Score=34.29  Aligned_cols=45  Identities=13%  Similarity=0.162  Sum_probs=37.9

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLT  109 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t  109 (266)
                      +.|++|||.+.|+    +.+.+-.-|-++++.|-+.+..+   +|  .=+|.++
T Consensus         6 a~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~q---~g--kfRy~iP   50 (155)
T PF07789_consen    6 AKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVNQ---NG--KFRYCIP   50 (155)
T ss_pred             cccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEecC---CC--ceEEeCC
Confidence            9999999999999    99999999999999999998732   12  4456665

The region in question is approximately 150 amino acid residues long.

>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus

Probab=82.41  E-value=2.4  Score=29.27  Aligned_cols=43  Identities=19%  Similarity=0.139  Sum_probs=37.8

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .|...|+..   +.|.++|-+.+|+    +...+...|.-|...|++.+.
T Consensus         9 ~IL~~ls~~---c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~Rk   51 (72)
T PF05584_consen    9 KILIILSKR---CCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIERK   51 (72)
T ss_pred             HHHHHHHhc---cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence            356667664   8999999999999    999999999999999999965

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=82.36  E-value=4  Score=37.52  Aligned_cols=68  Identities=18%  Similarity=0.182  Sum_probs=52.6

Q ss_pred             CCCCCceEEEecCCccHHHHHHHHHCCCCe---------------------------------------EEEeec-hHHH
Q 046424          198 GFEGLNQLVDVAGGLGANLKSIVSKYPQLR---------------------------------------GINFDL-PHVL  237 (266)
Q Consensus       198 ~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~---------------------------------------~~v~Dl-p~vi  237 (266)
                      +|.....++|==||+|+++++.+...+++-                                       .++.|+ |.++
T Consensus       188 gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i  267 (381)
T COG0116         188 GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHI  267 (381)
T ss_pred             CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHH
Confidence            377668999999999999999999887532                                       568998 5688


Q ss_pred             hhCCCC-------CCceEEeccCCC-CCC-CC-CEEEe
Q 046424          238 KHAPSC-------PGVEHVGGDMFV-EVP-KG-QAIFM  265 (266)
Q Consensus       238 ~~a~~~-------~ri~~~~gD~f~-~~P-~~-D~~~l  265 (266)
                      +.|+.+       +.|+|..+|+-. +-| .. |+++.
T Consensus       268 ~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~  305 (381)
T COG0116         268 EGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVIS  305 (381)
T ss_pred             HHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEe
Confidence            877653       779999999886 433 33 77764

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=82.07  E-value=1.3  Score=42.01  Aligned_cols=24  Identities=17%  Similarity=0.313  Sum_probs=21.6

Q ss_pred             CCCceEEEecCCccHHHHHHHHHC
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKY  223 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~  223 (266)
                      .+.++.+|||||.|.|+..+++++
T Consensus       116 g~iR~~LDvGcG~aSF~a~l~~r~  139 (506)
T PF03141_consen  116 GGIRTALDVGCGVASFGAYLLERN  139 (506)
T ss_pred             CceEEEEeccceeehhHHHHhhCC
Confidence            357999999999999999999984

; GO: 0008168 methyltransferase activity

>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2

Probab=81.85  E-value=1.2  Score=29.78  Aligned_cols=43  Identities=16%  Similarity=0.236  Sum_probs=35.2

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      |++.|-..|  ..|+.+|++.+++    +++.++.-|-.|...+++...
T Consensus        18 V~~~Ll~~G--~ltl~~i~~~t~l----~~~~Vk~~L~~LiQh~~v~y~   60 (62)
T PF08221_consen   18 VGEVLLSRG--RLTLREIVRRTGL----SPKQVKKALVVLIQHNLVQYF   60 (62)
T ss_dssp             HHHHHHHC---SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHcC--CcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCeeee
Confidence            567777776  8999999999999    999999999999999998753

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.

>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A)

Probab=81.79  E-value=1.6  Score=32.10  Aligned_cols=49  Identities=18%  Similarity=0.221  Sum_probs=38.6

Q ss_pred             HhhChhHHHhhc--CCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKA--SPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~--g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +.-.|++.|...  ...++++++|++++++    ++..++..++.|...|++-.+
T Consensus        48 ~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IYsT   98 (102)
T PF08784_consen   48 LQDKVLNFIKQQPNSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIYST   98 (102)
T ss_dssp             HHHHHHHHHHC----TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEEES
T ss_pred             HHHHHHHHHHhcCCCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEecc
Confidence            345577777661  1137999999999999    999999999999999998755

RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=81.64  E-value=1.5  Score=40.28  Aligned_cols=63  Identities=11%  Similarity=0.122  Sum_probs=45.6

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhhCCCC------CCceEEeccCCCCC---CCC-CEEEe
Q 046424          203 NQLVDVAGGLGANLKSIVSKYPQL-RGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEV---PKG-QAIFM  265 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P~l-~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~---P~~-D~~~l  265 (266)
                      -+++|.-+|+|..+++++++-++. +++..|+ |+.++.++.+      ..+++..+|.+.-+   ... |++.+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl  120 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI  120 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence            589999999999999999997655 5788899 4566665442      35778888877622   123 77765

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication

Probab=81.47  E-value=1.6  Score=35.44  Aligned_cols=44  Identities=18%  Similarity=0.225  Sum_probs=39.5

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchh
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPV  111 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~  111 (266)
                      -.|-.+||+.+|+    +.+-+.|.+..|...+|+.+.+        .|.|.+||-
T Consensus        75 ~~t~~~ia~~l~i----S~~Tv~r~ik~L~e~~iI~k~~--------~G~Y~iNP~  118 (165)
T PF05732_consen   75 VATQKEIAEKLGI----SKPTVSRAIKELEEKNIIKKIR--------NGAYMINPN  118 (165)
T ss_pred             EeeHHHHHHHhCC----CHHHHHHHHHHHHhCCcEEEcc--------CCeEEECcH
Confidence            4789999999999    8999999999999999999862        688999983

; GO: 0006260 DNA replication, 0006276 plasmid maintenance

>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed

Probab=80.91  E-value=2.3  Score=39.67  Aligned_cols=44  Identities=23%  Similarity=0.161  Sum_probs=37.8

Q ss_pred             CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           55 TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        55 ~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      .+.|.++|++.+++    +++.++++|+.|...|++.+..        ++.|.+..
T Consensus       309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~~~--------~g~~~l~r  352 (412)
T PRK04214        309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRRGE--------RGQWVLAR  352 (412)
T ss_pred             CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEecC--------CCceEecC
Confidence            38999999999999    9999999999999999999651        45676653

>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress

Probab=80.80  E-value=3.5  Score=28.96  Aligned_cols=49  Identities=14%  Similarity=0.071  Sum_probs=39.2

Q ss_pred             CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424           55 TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK  113 (266)
Q Consensus        55 ~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~  113 (266)
                      .|+...+||+.+++    ++.-++-.|..|..+|+|+.... .     .+-|.+|..+-
T Consensus        22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~p~-~-----s~GriPT~~aY   70 (78)
T PF03444_consen   22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQPH-P-----SGGRIPTDKAY   70 (78)
T ss_pred             CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCCCC-C-----CCCCCcCHHHH
Confidence            39999999999999    88899999999999999985311 1     35577776553

Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent

>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional

Probab=80.57  E-value=1.7  Score=37.62  Aligned_cols=47  Identities=17%  Similarity=0.282  Sum_probs=42.2

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ....|.+.|.+.+  .+++.|||+.+++    ++.-++|-|..|...|++.+.
T Consensus         6 R~~~Il~~l~~~~--~~~~~ela~~l~v----S~~TiRRdL~~Le~~g~l~r~   52 (252)
T PRK10906          6 RHDAIIELVKQQG--YVSTEELVEHFSV----SPQTIRRDLNDLAEQNKILRH   52 (252)
T ss_pred             HHHHHHHHHHHcC--CEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            3445788998876  8999999999999    999999999999999999976

>COG1510 Predicted transcriptional regulators [Transcription]

Probab=80.55  E-value=1.7  Score=35.20  Aligned_cols=35  Identities=20%  Similarity=0.206  Sum_probs=33.1

Q ss_pred             CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           55 TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        55 ~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .|+|+.||++++|+    +...++..++-|...+++...
T Consensus        40 ~Pmtl~Ei~E~lg~----Sks~vS~~lkkL~~~~lV~~~   74 (177)
T COG1510          40 KPLTLDEIAEALGM----SKSNVSMGLKKLQDWNLVKKV   74 (177)
T ss_pred             CCccHHHHHHHHCC----CcchHHHHHHHHHhcchHHhh
Confidence            39999999999999    899999999999999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	266
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		4e-84
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		3e-77
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		1e-74
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		2e-55
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		3e-46
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		3e-17
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		4e-16
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		2e-13
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		4e-13
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		4e-13
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		4e-13
2ip2_A	334	Structure Of The Pyocyanin Biosynthetic Protein Phz		1e-05
3gwz_A	369	Structure Of The Mitomycin 7-O-Methyltransferase Mm		1e-04
4a6d_A	353	Crystal Structure Of Human N-Acetylserotonin Methyl		3e-04

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  307 bits (786), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 156/267 (58%), Positives = 194/267 (72%), Gaps = 3/267 (1%)
Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP-TQLSS 59
           MGS   + Q+      DE+  L AM+LAS +VLPM +KSA EL LLEI+AKA P  Q+S 
Sbjct: 1   MGS-TGETQITPTHISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISP 59
Query: 60  SEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
            EIASQLPT N  AP++LDRMLRLLA Y  LTC++ + +DG VQRLYGL  V+KY V N+
Sbjct: 60  IEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 119
Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS++   L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN+
Sbjct: 120 DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNK 178
Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE Y GFEGL  LVDV GG GA + +IVSKYP ++GINFDLPHV++ 
Sbjct: 179 GMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED 238
Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           APS PGVEHVGGDMFV +PK  A+FMK
Sbjct: 239 APSYPGVEHVGGDMFVSIPKADAVFMK 265

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  284 bits (727), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 147/269 (54%), Positives = 192/269 (71%), Gaps = 4/269 (1%)
Query: 1   MGSLQD-DHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQ--L 57
           MGS  + + Q++   + DE+  L AM+LAS AVLPM +K+A EL +LEIMAK+ P    +
Sbjct: 1   MGSTGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYI 60
Query: 58  SSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP 117
           S +EIA+QLPT N +AP++LDR+LRLLASYS +T  L     G V+RLYGL PV K+   
Sbjct: 61  SPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTK 120
Query: 118 NKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLF 177
           N+DGVSLAP LL+  D+V ++ W   KDA+LEG +PF KA+ GM+ F     D RIN +F
Sbjct: 121 NEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAY-GMNIFDYHGTDHRINKVF 179
Query: 178 NQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVL 237
           N+ M +++TI MK+ILE+Y GFEGL  +VDV GG GA    IV+KYP +  INFDLPHV+
Sbjct: 180 NKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVI 239
Query: 238 KHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
           + AP+  GVEH+GGDMF  VPKG AIF+K
Sbjct: 240 QDAPAFSGVEHLGGDMFDGVPKGDAIFIK 268

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  275 bits (704), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/267 (50%), Positives = 183/267 (68%), Gaps = 6/267 (2%)
Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSS 60
           MGS   D    +  + DE   + A++LAS +VLPMT+K+A ELGLLEI+  A    L+ +
Sbjct: 5   MGSTAAD----MAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPT 60
Query: 61  EIASQLPTN-NKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           E+A++LP+  N +AP ++DR+LRLLASY+ +TC +   KDG + R YG  PV K+  PN+
Sbjct: 61  EVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNE 120
Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS+A   L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN+
Sbjct: 121 DGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAY-GMSAFEYHGTDPRFNRVFNE 179
Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M NH+ I+ K++LE+Y GFEGL  LVDV GG+GA + +I + YP ++G+NFDLPHV+  
Sbjct: 180 GMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISE 239
Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           AP  PGV HVGGDMF EVP G  I MK
Sbjct: 240 APQFPGVTHVGGDMFKEVPSGDTILMK 266

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score =  212 bits (539), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/267 (43%), Positives = 166/267 (62%), Gaps = 5/267 (1%)
Query: 5   QDDHQVMLKPARDEQDFLL-AMELASGAVLPMTIKSATELGLLEIMAKASP--TQLSSSE 61
           ++D+Q+     + E    L AM L +  V P  + +A +L L EI+AKA+P    +S SE
Sbjct: 8   KEDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSE 67
Query: 62  IASQLP--TNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           IAS+LP  T +   P  LDRMLRLLASYS LT    + +DG  +R+YGL+ V KY VP++
Sbjct: 68  IASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE 127
Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
               LA     +     +  W   K+A+++  +   K  +G+  +    KD+++N +FN+
Sbjct: 128 SRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNK 187
Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
           SM +     MK +LEIY GFEG++ LVDV GG G NL+ I+SKYP ++GINFDLP V+++
Sbjct: 188 SMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN 247
Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           AP   G+EHVGGDMF  VP+G A+ +K
Sbjct: 248 APPLSGIEHVGGDMFASVPQGDAMILK 274

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/267 (41%), Positives = 157/267 (58%), Gaps = 5/267 (1%)
Query: 5   QDDHQVMLKPARDEQDFLL-AMELASGAVLPMTIKSATELGLLEIMAKASP--TQLSSSE 61
           ++D+Q+     + E    L A  L +  V P  + +A +L L EI+AKA+P     S SE
Sbjct: 8   KEDNQISATSEQTEDSACLSAXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPSE 67
Query: 62  IASQLP--TNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           IAS+LP  T +   P  LDR LRLLASYS LT    + +DG  +R+YGL+ V KY VP++
Sbjct: 68  IASKLPASTQHSDLPNRLDRXLRLLASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDE 127
Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
               LA     +     +  W   K+A+++  +   K  +G+  +    KD++ N +FN+
Sbjct: 128 SRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNK 187
Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
           S  +      K  LEIY GFEG++ LVDV GG G NL+ I+SKYP ++GINFDLP V+++
Sbjct: 188 SXVDVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN 247
Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           AP   G+EHVGGD F  VP+G A  +K
Sbjct: 248 APPLSGIEHVGGDXFASVPQGDAXILK 274

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 8/234 (3%)
Query: 35  MTIKSATELGLLEIMAK-ASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93
           M++K + E+ +  I+     P  LS+     Q+P+        + R++R LA   F    
Sbjct: 31  MSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPSTKVDN---VQRLMRYLAHNGFF--E 85
Query: 94  LVSNKD-GSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSV 152
           +++N++  + +  Y LT  S+  V   + + LAP +  + D     S+   K  + E  +
Sbjct: 86  IITNQELENEEEAYALTVASELLVKGTE-LCLAPMVECVLDPTLSTSFHNLKKWVYEEDL 144
Query: 153 PFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGL 212
                + G D +    K+   N L+N ++ + + ++   + +    FEGL  +VDV GG 
Sbjct: 145 TLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEGLESIVDVGGGN 204
Query: 213 GANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
           G   K I   +P+L  + FD P V+++      + +VGGDMF+ VPK  A+ +K
Sbjct: 205 GTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFISVPKADAVLLK 258

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 11/233 (4%)
Query: 35  MTIKSATELGLLEIMAK-ASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN 93
           M++K A E+ +  I+     P  LS+     Q+P++       + R++R LA   F    
Sbjct: 31  MSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGN---VRRLMRYLAHNGFF--E 85
Query: 94  LVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVP 153
           +++ ++ S    Y LT  S+  V   D + LAP +  + D     S+   K  + E  + 
Sbjct: 86  IITKEEES----YALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLT 140
Query: 154 FMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLG 213
                 G   +    K+   N  FN +M + + ++   + +    F+GL  +VDV GG G
Sbjct: 141 LFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTG 200
Query: 214 ANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
              K I   +P+L+ I FD P V+++      + +VGGDMF  +P   A+ +K
Sbjct: 201 TTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLK 253

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 11/232 (4%)
Query: 36  TIKSATELGLLEIMAK-ASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNL 94
           ++K A E  +  I+     P  LS+     Q+P++       + R+ R LA   F    +
Sbjct: 32  SLKWAVEXNIPNIIQNHGKPISLSNLVSILQVPSSKIGN---VRRLXRYLAHNGFF--EI 86
Query: 95  VSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPF 154
           ++ ++ S    Y LT  S+  V   D + LAP +  + D     S+   K  + E  +  
Sbjct: 87  ITKEEES----YALTVASELLVRGSD-LCLAPXVECVLDPTLSGSYHELKKWIYEEDLTL 141
Query: 155 MKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGA 214
                G   +    K+   N  FN +  + + ++   + +    F+GL  +VDV GG G 
Sbjct: 142 FGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVGGGTGT 201
Query: 215 NLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
             K I   +P+L+ I FD P V+++      + +VGGD F  +P   A+ +K
Sbjct: 202 TAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIPNADAVLLK 253

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 111/246 (45%), Gaps = 20/246 (8%)
Query: 32  VLPMTIKSATELGLLE-IMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFL 90
           V  M +KSA ELG+ + I     P  LS  E+AS L  +  K  I L R LRLL    F 
Sbjct: 22  VSSMALKSAMELGIADAIHNHGKPMTLS--ELASSLKLHPSKVNI-LHRFLRLLTHNGFF 78
Query: 91  TCNLVSNKDGSVQRL--YGLTPVSKYFVPNKDGVSLAPTLL--IIQDQVN---MDSWSCA 143
              +V  K+G  +    Y LTP SK  +  K      PT L  I++  ++   +D WS +
Sbjct: 79  AKTIVKGKEGDEEEEIAYSLTPPSKLLISGK------PTCLSSIVKGALHPSSLDMWSSS 132
Query: 144 KDALLEG-SVPFMKAHNGMDGFAAAAKDERINNL--FNQSMHNHTTIVMKEILEIYKGFE 200
           K    E       +   G   +    KD   + L  F  +M + + +    + E  + FE
Sbjct: 133 KKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFE 192
Query: 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKG 260
           GL  LVDV GG G   K I   +P L+   FD P V+ +      +  VGGDMF  +P  
Sbjct: 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSA 252
Query: 261 QAIFMK 266
            A+ +K
Sbjct: 253 DAVLLK 258

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 111/246 (45%), Gaps = 20/246 (8%)
Query: 32  VLPMTIKSATELGLLE-IMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFL 90
           V  M +KSA ELG+ + I     P  LS  E+AS L  +  K  I L R LRLL    F 
Sbjct: 21  VSSMALKSAMELGIADAIHNHGKPMTLS--ELASSLKLHPSKVNI-LHRFLRLLTHNGFF 77
Query: 91  TCNLVSNKDGSVQRL--YGLTPVSKYFVPNKDGVSLAPTLL--IIQDQVN---MDSWSCA 143
              +V  K+G  +    Y LTP SK  +  K      PT L  I++  ++   +D WS +
Sbjct: 78  AKTIVKGKEGDEEEEIAYSLTPPSKLLISGK------PTCLSSIVKGALHPSSLDMWSSS 131
Query: 144 KDALLEG-SVPFMKAHNGMDGFAAAAKDERINNL--FNQSMHNHTTIVMKEILEIYKGFE 200
           K    E       +   G   +    KD   + L  F  +M + + +    + E  + FE
Sbjct: 132 KKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFE 191
Query: 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKG 260
           GL  LVDV GG G   K I   +P L+   FD P V+ +      +  VGGDMF  +P  
Sbjct: 192 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSA 251
Query: 261 QAIFMK 266
            A+ +K
Sbjct: 252 DAVLLK 257

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 111/246 (45%), Gaps = 20/246 (8%)
Query: 32  VLPMTIKSATELGLLE-IMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFL 90
           V  M +KSA ELG+ + I     P  LS  E+AS L  +  K  I L R LRLL    F 
Sbjct: 18  VSSMALKSAMELGIADAIHNHGKPMTLS--ELASSLKLHPSKVNI-LHRFLRLLTHNGFF 74
Query: 91  TCNLVSNKDGSVQRL--YGLTPVSKYFVPNKDGVSLAPTLL--IIQDQVN---MDSWSCA 143
              +V  K+G  +    Y LTP SK  +  K      PT L  I++  ++   +D WS +
Sbjct: 75  AKTIVKGKEGDEEEEIAYSLTPPSKLLISGK------PTCLSSIVKGALHPSSLDMWSSS 128
Query: 144 KDALLEG-SVPFMKAHNGMDGFAAAAKDERINNL--FNQSMHNHTTIVMKEILEIYKGFE 200
           K    E       +   G   +    KD   + L  F  +M + + +    + E  + FE
Sbjct: 129 KKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFE 188
Query: 201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKG 260
           GL  LVDV GG G   K I   +P L+   FD P V+ +      +  VGGDMF  +P  
Sbjct: 189 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSA 248
Query: 261 QAIFMK 266
            A+ +K
Sbjct: 249 DAVLLK 254

>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 29/248 (11%)
Query: 25  MELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLL 84
           +++ +G      +  AT LGL +++        S   +A+ + ++ ++    + R++RLL
Sbjct: 13  IQVVTGEWKSRCVYVATRLGLADLIESGID---SDETLAAAVGSDAER----IHRLMRLL 65
Query: 85  ASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAK 144
            ++     +    +DG     Y  TP S + + + +G S    +L   ++ +  +W+ A 
Sbjct: 66  VAFEIFQGD---TRDG-----YANTPTS-HLLRDVEG-SFRDMVLFYGEEFHA-AWTPAC 114
Query: 145 DALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQ 204
           +ALL G+  F  A  G D ++   +       F  +M   + +   EI  +   F G   
Sbjct: 115 EALLSGTPGFELAF-GEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RS 170
Query: 205 LVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAP-------SCPGVEHVGGDMFVEV 257
            VDV GG G   K+I+   P  RG+  D    L  A        +   V  VGGDM  EV
Sbjct: 171 FVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEV 230
Query: 258 PKGQAIFM 265
           P    I++
Sbjct: 231 PSNGDIYL 238

>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 139 SWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKG 198
           +W     ++  G   F  A NG   +    +D +   LFN++  + +     ++   Y  
Sbjct: 142 AWEQLTHSVRTGEASFDVA-NGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD- 199
Query: 199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGG 251
           F G    VD+ GG G+   +++  +P LRG   + P V + A             E + G
Sbjct: 200 FSGAATAVDIGGGRGSLXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPG 259
Query: 252 DMFVEVPKGQAIFM 265
           D F  +P G  +++
Sbjct: 260 DFFETIPDGADVYL 273

>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 18/228 (7%)
Query: 17  DEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPII 76
           ++Q + L  + A+G ++   + +A ELG+ +++A+A P  L  + +A+ +  +     ++
Sbjct: 5   EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEA-PGPLDVAAVAAGVRASAHGTELL 63
Query: 77  LDRM--LRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQ 134
           LD    L+LL   +        N + S   L  ++P S+             ++L    +
Sbjct: 64  LDICVSLKLLKVETRGGKAFYRNTELSSDYLTTVSPTSQ------------CSMLKYMGR 111
Query: 135 VNMDSWSCAKDALLEGSVPFMKAHN--GMDGFAAAAKDERINNLFNQSMHNHTTIVMKEI 192
            +   W    DA+ EG   +++       + F A  + E     F Q++    ++  + +
Sbjct: 112 TSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSV 171
Query: 193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHA 240
           L  +        + D+ GG GA  K  +S YP  +   FD+P V+  A
Sbjct: 172 LTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTA 218

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	266
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	3e-98
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	1e-96
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	7e-89
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	8e-82
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	2e-78
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	1e-77
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	4e-76
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	3e-75
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	3e-74
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	6e-74
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	4e-69
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	4e-56
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	1e-55
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	2e-52
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	8e-49
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  291 bits (746), Expect = 3e-98
 Identities = 147/269 (54%), Positives = 191/269 (71%), Gaps = 4/269 (1%)

Query: 1   MGSL-QDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP--TQL 57
           MGS    + Q++   + DE+  L AM+LAS AVLPM +K+A EL +LEIMAK+ P    +
Sbjct: 1   MGSTGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYI 60

Query: 58  SSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP 117
           S +EIA+QLPT N +AP++LDR+LRLLASYS +T  L     G V+RLYGL PV K+   
Sbjct: 61  SPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTK 120

Query: 118 NKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLF 177
           N+DGVSLAP LL+  D+V ++ W   KDA+LEG +PF KA+ GM+ F     D RIN +F
Sbjct: 121 NEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAY-GMNIFDYHGTDHRINKVF 179

Query: 178 NQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVL 237
           N+ M +++TI MK+ILE+Y GFEGL  +VDV GG GA    IV+KYP +  INFDLPHV+
Sbjct: 180 NKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVI 239

Query: 238 KHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
           + AP+  GVEH+GGDMF  VPKG AIF+K
Sbjct: 240 QDAPAFSGVEHLGGDMFDGVPKGDAIFIK 268

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  286 bits (734), Expect = 1e-96
 Identities = 135/267 (50%), Positives = 182/267 (68%), Gaps = 6/267 (2%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSS 60
           MGS   D       + DE   + A++LAS +VLPMT+K+A ELGLLEI+  A    L+ +
Sbjct: 5   MGSTAADMA----ASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPT 60

Query: 61  EIASQLPTN-NKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           E+A++LP+  N +AP ++DR+LRLLASY+ +TC +   KDG + R YG  PV K+  PN+
Sbjct: 61  EVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNE 120

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS+A   L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN+
Sbjct: 121 DGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAY-GMSAFEYHGTDPRFNRVFNE 179

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M NH+ I+ K++LE+Y GFEGL  LVDV GG+GA + +I + YP ++G+NFDLPHV+  
Sbjct: 180 GMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISE 239

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           AP  PGV HVGGDMF EVP G  I MK
Sbjct: 240 APQFPGVTHVGGDMFKEVPSGDTILMK 266

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  267 bits (684), Expect = 7e-89
 Identities = 114/275 (41%), Positives = 167/275 (60%), Gaps = 10/275 (3%)

Query: 1   MGS--LQDDHQVMLKPAR--DEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP-- 54
           MG+  +  +   +   +   ++   L AM L +  V P  + +A +L L EI+AKA+P  
Sbjct: 1   MGNSYITKEDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPG 60

Query: 55  TQLSSSEIASQLPTNNKK--APIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS 112
             +S SEIAS+LP + +    P  LDRMLRLLASYS LT    + +DG  +R+YGL+ V 
Sbjct: 61  AFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVG 120

Query: 113 KYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSV-PFMKAHNGMDGFAAAAKDE 171
           KY VP++    LA     +     +  W   K+A+++  +  F   H G+  +    KD+
Sbjct: 121 KYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH-GVTKYEFMGKDK 179

Query: 172 RINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINF 231
           ++N +FN+SM +     MK +LEIY GFEG++ LVDV GG G NL+ I+SKYP ++GINF
Sbjct: 180 KMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINF 239

Query: 232 DLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK 266
           DLP V+++AP   G+EHVGGDMF  VP+G A+ +K
Sbjct: 240 DLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILK 274

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  248 bits (636), Expect = 8e-82
 Identities = 66/267 (24%), Positives = 112/267 (41%), Gaps = 15/267 (5%)

Query: 1   MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSS 60
           M S  +  +    P+   +   L  +     +  M++K A E+ +  I+       +S S
Sbjct: 1   MASSINGRK----PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKP-ISLS 55

Query: 61  EIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKD 120
            + S L   + K    + R++R LA   F             +  Y LT  S+  V   D
Sbjct: 56  NLVSILQVPSSKIGN-VRRLMRYLAHNGFFEI------ITKEEESYALTVASELLVRGSD 108

Query: 121 GVSLAPTLLIIQDQVNMDSWSCAKDALLEGSV-PFMKAHNGMDGFAAAAKDERINNLFNQ 179
              LAP +  + D     S+   K  + E  +  F     G   +    K+   N  FN 
Sbjct: 109 L-CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTL-GSGFWDFLDKNPEYNTSFND 166

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
           +M + + ++   + +    F+GL  +VDV GG G   K I   +P+L+ I FD P V+++
Sbjct: 167 AMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN 226

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
                 + +VGGDMF  +P   A+ +K
Sbjct: 227 LSGSNNLTYVGGDMFTSIPNADAVLLK 253

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  240 bits (614), Expect = 2e-78
 Identities = 77/262 (29%), Positives = 113/262 (43%), Gaps = 14/262 (5%)

Query: 15  ARDEQDFLLA----MELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNN 70
             +E +   A     +     V  M +KSA ELG+ + +       ++ SE+AS L  + 
Sbjct: 1   GSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKP-MTLSELASSLKLHP 59

Query: 71  KKAPIILDRMLRLLASYSFLTCNLVSNKDGSV--QRLYGLTPVSKYFVPNKDGVSLAPTL 128
            K  I L R LRLL    F    +V  K+G    +  Y LTP SK  +  K    L+  +
Sbjct: 60  SKVNI-LHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPT-CLSSIV 117

Query: 129 LIIQDQVNMDSWSCAKDALLEGS--VPFMKAHNGMDGFAAAAKDERINNL--FNQSMHNH 184
                  ++D WS +K    E      F  A  G   +    KD   + L  F  +M + 
Sbjct: 118 KGALHPSSLDMWSSSKKWFNEDKEQTLFECAT-GESFWDFLNKDSESSTLSMFQDAMASD 176

Query: 185 TTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCP 244
           + +    + E  + FEGL  LVDV GG G   K I   +P L+   FD P V+ +     
Sbjct: 177 SRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNE 236

Query: 245 GVEHVGGDMFVEVPKGQAIFMK 266
            +  VGGDMF  +P   A+ +K
Sbjct: 237 NLNFVGGDMFKSIPSADAVLLK 258

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  237 bits (608), Expect = 1e-77
 Identities = 55/273 (20%), Positives = 93/273 (34%), Gaps = 27/273 (9%)

Query: 2   GSLQDDHQVMLKPARDE---QDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLS 58
           GS     +   +   D    Q  L   E A G      +++A  +G+ + +        +
Sbjct: 1   GSHMQRQRPPSRAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVDGP---RT 57

Query: 59  SSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPN 118
            +E+A+   T+       L R+LRLLA    +  +            + LT        +
Sbjct: 58  PAELAAATGTD----ADALRRVLRLLAVRDVVRES---------DGRFALTDKGAALRSD 104

Query: 119 KDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFN 178
              V     +L+  D +          AL      F     G    A    D  +  L+ 
Sbjct: 105 -SPVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIF-GSSLDAYFDGDAEVEALYY 162

Query: 179 QSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVL- 237
           + M   +      +      F     + DV GG G  L +++ ++P L+G+  D   V+ 
Sbjct: 163 EGMETVSAAEHLILARAG-DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA 221

Query: 238 ---KHAPSCPG-VEHVGGDMFVEVPKGQAIFMK 266
                AP   G  + V GD   EVP      +K
Sbjct: 222 RHRLDAPDVAGRWKVVEGDFLREVPHADVHVLK 254

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  234 bits (599), Expect = 4e-76
 Identities = 53/260 (20%), Positives = 97/260 (37%), Gaps = 25/260 (9%)

Query: 15  ARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAP 74
           A          ++  GA     I  A ELG+ E++ +      +++ +A     +     
Sbjct: 33  AARAAAEETVNDILQGAWKARAIHVAVELGVPELLQEGP---RTATALAEATGAH----E 85

Query: 75  IILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQ 134
             L R+LRLLA+                  L+    +S   +P+     +A         
Sbjct: 86  QTLRRLLRLLATVGVFDDL-------GHDDLFAQNALSAVLLPD-PASPVATDARFQAAP 137

Query: 135 VNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILE 194
            +  +W     ++  G   F  A+ G   +    +D +   LFN++M + +     ++  
Sbjct: 138 WHWRAWEQLTHSVRTGEASFDVAN-GTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAA 196

Query: 195 IYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVE 247
            Y  F G    VD+ GG G+ + +++  +P LRG   + P V + A             E
Sbjct: 197 AYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCE 255

Query: 248 HVGGDMFVEVPKG-QAIFMK 266
            + GD F  +P G     +K
Sbjct: 256 ILPGDFFETIPDGADVYLIK 275

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  232 bits (594), Expect = 3e-75
 Identities = 45/262 (17%), Positives = 88/262 (33%), Gaps = 23/262 (8%)

Query: 13  KPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKK 72
                +QD  + ++     V PM ++ A  L L++ +   +    + + +A +  T+   
Sbjct: 9   PLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLAGA---DTLAGLADRTDTH--- 62

Query: 73  APIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQ 132
            P  L R++R L     L             R    T +             A   L   
Sbjct: 63  -PQALSRLVRHLTVVGVLEG------GEKQGRPLRPTRLGMLLADGHPAQQRAWLDLNGA 115

Query: 133 DQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEI 192
                 +++   D +  G   +   + G   +   + D  + + F+  M     +  +  
Sbjct: 116 VSHADLAFTGLLDVVRTGRPAYAGRY-GRPFWEDLSADVALADSFDALMSCDEDLAYEAP 174

Query: 193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPG 245
            + Y  +  +  ++DV GG G  L +I  + P LRG   +L    + A            
Sbjct: 175 ADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADR 233

Query: 246 VEHVGGDMFVEVPKG-QAIFMK 266
           V    GD F  +P     + + 
Sbjct: 234 VTVAEGDFFKPLPVTADVVLLS 255

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  228 bits (584), Expect = 3e-74
 Identities = 49/257 (19%), Positives = 90/257 (35%), Gaps = 25/257 (9%)

Query: 18  EQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIIL 77
           ++   + +   +    PM ++ A  L + + +A       +++EIAS    +       L
Sbjct: 3   KRAAHIGLRALADLATPMAVRVAATLRVADHIAAGH---RTAAEIASAAGAH----ADSL 55

Query: 78  DRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNM 137
           DR+LR L +    T       DG  Q +YGLT   +    +          +        
Sbjct: 56  DRLLRHLVAVGLFTR------DG--QGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGD 107

Query: 138 DSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYK 197
             +     ++  G   +   + G   +     D  ++  F+  M +H  +    I   Y 
Sbjct: 108 LGFVELAHSIRTGQPAYPVRY-GTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD 166

Query: 198 GFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVG 250
            +  L  +VDV GG G  L ++++ +  L G   DL      A             + V 
Sbjct: 167 -WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVV 225

Query: 251 GDMFVEVPKG-QAIFMK 266
           G  F  +P G     + 
Sbjct: 226 GSFFDPLPAGAGGYVLS 242

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  228 bits (584), Expect = 6e-74
 Identities = 47/262 (17%), Positives = 90/262 (34%), Gaps = 26/262 (9%)

Query: 14  PARDEQ-DFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKK 72
            AR +Q D L  +        PM +++A  L L++ +   +    +   +A++  T    
Sbjct: 12  AARPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHILAGA---RTVKALAARTDTR--- 65

Query: 73  APIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQ 132
            P  L R++R L +   L               +  T V +    +      A   L   
Sbjct: 66  -PEALLRLIRHLVAIGLLEE--------DAPGEFVPTEVGELLADDHPAAQRAWHDLTQA 116

Query: 133 DQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEI 192
                 S++   DA+  G   +   + G   +   A    +   F+  +     +     
Sbjct: 117 VARADISFTRLPDAIRTGRPTYESIY-GKPFYEDLAGRPDLRASFDSLLACDQDVAFDAP 175

Query: 193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPG 245
              Y  +  +  ++DV GG G    +I  + P +     ++   +  A S          
Sbjct: 176 AAAY-DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDR 234

Query: 246 VEHVGGDMFVEVPKG-QAIFMK 266
           V+ V GD F  +P+   AI + 
Sbjct: 235 VDVVEGDFFEPLPRKADAIILS 256

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  215 bits (550), Expect = 4e-69
 Identities = 58/258 (22%), Positives = 97/258 (37%), Gaps = 30/258 (11%)

Query: 17  DEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPII 76
           +       +++ +G      +  AT LGL +++        S   +A+ + ++       
Sbjct: 5   NLAAARNLIQVVTGEWKSRCVYVATRLGLADLIESGI---DSDETLAAAVGSD----AER 57

Query: 77  LDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVN 136
           + R++RLL ++               +  Y  TP S      +   S    +L   ++  
Sbjct: 58  IHRLMRLLVAFEIFQG--------DTRDGYANTPTSHLLRDVEG--SFRDMVLFYGEEF- 106

Query: 137 MDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIY 196
             +W+ A +ALL G+  F  A  G D ++   +       F  +M   + +   EI  + 
Sbjct: 107 HAAWTPACEALLSGTPGFELAF-GEDFYSYLKRCPDAGRRFLLAMK-ASNLAFHEIPRLL 164

Query: 197 KGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHV 249
             F G    VDV GG G   K+I+   P  RG+  D    L  A            V  V
Sbjct: 165 -DFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLV 222

Query: 250 GGDMFVEVP-KGQAIFMK 266
           GGDM  EVP  G    + 
Sbjct: 223 GGDMLQEVPSNGDIYLLS 240

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  182 bits (465), Expect = 4e-56
 Identities = 46/274 (16%), Positives = 92/274 (33%), Gaps = 31/274 (11%)

Query: 2   GSLQDDHQVMLKPARDEQDFLLAMELA-SGAVLPMTIKSATELGLLEIMAKASPTQLSSS 60
             L      M+        +  A EL   G +    +K+A EL L   MA+        +
Sbjct: 12  SGLVPRGSHMMSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAEGP---KDLA 68

Query: 61  EIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKD 120
            +A+   +     P  L+ +L  L     +       +DG     + LT  + Y   +  
Sbjct: 69  TLAADTGSV----PPRLEMLLETLRQMRVINL-----EDG----KWSLTEFADYMF-SPT 114

Query: 121 GVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQS 180
                     +   +   +        L  +V   K   G             N  F + 
Sbjct: 115 PKEPNLHQTPVAKAMAFLADDFYMG--LSQAVRGQKNFKGQ--VPYPPVTREDNLYFEEI 170

Query: 181 MHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHA 240
             ++    ++ +LE  K  +G+ +++DV GG+G    +++  +P+L     +LP  +   
Sbjct: 171 HRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLV 229

Query: 241 PSCPG-------VEHVGGDMFVE-VPKGQAIFMK 266
                       +  +  D++ E  P+  A+   
Sbjct: 230 NENAAEKGVADRMRGIAVDIYKESYPEADAVLFC 263

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  181 bits (460), Expect = 1e-55
 Identities = 33/251 (13%), Positives = 72/251 (28%), Gaps = 31/251 (12%)

Query: 25  MELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLL 84
               +       IK+A EL +   +++      SS  +A +  T+       +  +   L
Sbjct: 11  FNTVNAYQRSAAIKAAVELNVFTAISQGI---ESSQSLAQKCQTS----ERGMRMLCDYL 63

Query: 85  ASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAK 144
               F+T              Y LT  S  F+  +    +   +  +   +  + ++   
Sbjct: 64  VIIGFMTKQ---------AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLT 114

Query: 145 DALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQ 204
            A+L+G                     +     +  M N   ++ + +       E L  
Sbjct: 115 AAVLKGGTAISSEG---TLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN--ENKIEPLK- 168

Query: 205 LVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPG-------VEHVGGDMFVEV 257
           ++D++   G    ++    P       D   VL+ A               + G  F   
Sbjct: 169 VLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVD 228

Query: 258 PKGQA--IFMK 266
                  + + 
Sbjct: 229 YGNDYDLVLLP 239

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score =  173 bits (441), Expect = 2e-52
 Identities = 41/274 (14%), Positives = 87/274 (31%), Gaps = 34/274 (12%)

Query: 7   DHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQL 66
             +   +     +   LA E+A G V+    +   + G+ ++++       +  EI+ + 
Sbjct: 2   SLRYTKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREG-YTLQEISGRT 60

Query: 67  PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAP 126
                        +L    +   +       ++      Y L     + + +     +A 
Sbjct: 61  GLT----RYAAQVLLEASLTIGTILL-----EED----RYVLAKAGWFLLND----KMAR 103

Query: 127 TLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGF---AAAAKDERINNLFNQSMHN 183
             +     VN       ++ALL G    +K   G         +   E++   +    H 
Sbjct: 104 VNMEFNHDVNYQGLFHLEEALLNGRPEGLKVF-GEWPTIYEGLSQLPEQVQKSWFGFDHF 162

Query: 184 HTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC 243
           ++     + LEI        +L+D+ G  G      V    ++     DLP  L+     
Sbjct: 163 YSDQSFGKALEIV-FSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQ 221

Query: 244 PG-------VEHVGGDMF---VEVPKGQ-AIFMK 266
                    +   G ++    V  P G  A++M 
Sbjct: 222 TAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  164 bits (416), Expect = 8e-49
 Identities = 40/268 (14%), Positives = 83/268 (30%), Gaps = 39/268 (14%)

Query: 11  MLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNN 70
             +        +  ++L+        +  A    L ++         + +E+A+      
Sbjct: 15  STEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQTG----RTPAEVAASFGMV- 69

Query: 71  KKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS-KYFVPNKDGVSLAPTLL 129
                    +L  LA+   LT              +  T ++ +Y         + P + 
Sbjct: 70  ---EGKAAILLHALAALGLLTKE---------GDAFRNTALTERYLTTTSAD-YIGPIVE 116

Query: 130 IIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVM 189
                +  D+W    + L                 +  A D R  + FN +M   +  ++
Sbjct: 117 H--QYLQWDNWPRLGEILRSEKPL------AFQQESRFAHDTRARDAFNDAMVRLSQPMV 168

Query: 190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPG---- 245
             + E+   F     ++D+AGG G  L  ++ ++PQL G  +DLP     A         
Sbjct: 169 DVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDL 227

Query: 246 ---VEHVGGDMFVEVPKGQ----AIFMK 266
              VE    ++             + + 
Sbjct: 228 GGRVEFFEKNLLDARNFEGGAADVVMLN 255

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 46/287 (16%), Positives = 72/287 (25%), Gaps = 107/287 (37%)

Query: 57  LSSSEIAS--QLPTNNKKAPIILDRMLR-------------LLASYSFLTCNL-VSNKDG 100
           LS  EI               +   +L              L  +Y FL   +    +  
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 101 S---------VQRLYGLTPV-SKYFVPNKDGV--------SLAPTLLII----------- 131
           S           RLY    V +KY V               L P   ++           
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 132 ------QD---QVNMDS---W----SCAK-DALLEGSVPFMKAHNGMDGFAAAAKD---- 170
                      Q  MD    W    +C   + +LE      K    +D    +  D    
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE---MLQKLLYQIDPNWTSRSDHSSN 222

Query: 171 ---------ERINNLFNQSMHNHTTIVMKEI--LEIYKGFEG----------------LN 203
                      +  L     + +  +V+  +   + +  F                  L+
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 204 -------QLVDVAGGLG-ANLKSIVSKYPQLRGINFDLPH-VLKHAP 241
                   L   +  L    +KS++ KY  L     DLP  VL   P
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPREVLTTNP 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	266
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	100.0
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	100.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	100.0
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	100.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	100.0
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	100.0
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	100.0
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	100.0
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	100.0
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	100.0
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	100.0
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	100.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	100.0
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	100.0
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	100.0
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.98
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.27
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.53
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.5
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.42
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.37
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.36
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.35
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.34
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.33
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.33
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.3
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.29
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.28
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.27
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.25
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.24
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.24
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.24
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.23
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.23
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.22
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.22
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.21
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.2
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.2
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.19
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.18
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.18
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.18
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.17
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.17
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.16
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.16
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.15
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.15
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.15
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.14
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.14
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.14
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.13
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.12
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.11
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.1
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.1
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.1
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.09
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.09
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.07
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.06
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.05
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.04
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.04
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.04
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.03
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.03
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.03
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.03
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.03
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.02
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.02
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.02
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.02
3ocj_A	305	Putative exported protein; structural genomics, PS	98.02
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.0
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.99
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.99
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	97.98
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.98
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	97.98
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	97.98
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	97.97
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.97
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.97
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	97.97
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	97.96
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.96
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	97.96
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.96
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.95
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.95
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.93
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	97.93
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.93
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.92
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.91
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.91
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	97.91
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.9
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.9
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	97.9
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	97.88
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.88
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.88
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.87
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.85
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	97.85
2p7i_A	250	Hypothetical protein; putative methyltransferase,	97.85
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.85
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.85
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.84
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	97.84
3i9f_A	170	Putative type 11 methyltransferase; structural gen	97.84
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.84
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.83
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	97.83
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.82
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.82
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	97.81
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.79
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.79
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.79
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.79
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.78
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.78
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.78
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	97.78
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	97.76
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.76
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	97.76
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.76
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.75
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.75
3cc8_A	230	Putative methyltransferase; structural genomics, j	97.74
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.73
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.73
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	97.73
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	97.73
3lcc_A	235	Putative methyl chloride transferase; halide methy	97.73
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.73
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	97.72
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.72
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.72
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.72
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.7
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.69
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.69
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.69
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	97.69
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.68
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.67
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.67
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.67
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.66
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	97.65
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	97.65
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.65
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.65
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	97.64
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.63
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.63
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.63
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	97.62
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	97.61
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.61
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.6
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.6
2o07_A	304	Spermidine synthase; structural genomics, structur	97.6
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.6
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	97.59
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	97.59
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	97.59
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.59
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.59
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.58
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.58
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.58
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.57
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.57
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	97.56
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.56
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.55
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.55
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.55
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	97.55
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.54
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.52
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.52
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.52
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.52
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.51
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.51
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.51
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	97.5
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	97.5
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.49
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.48
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.48
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.47
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.46
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.46
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.46
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.45
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	97.45
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.43
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	97.41
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.41
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	97.4
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.39
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.38
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	97.38
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.37
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.34
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.33
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.32
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.32
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.25
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.25
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.25
3b73_A	111	PHIH1 repressor-like protein; winged-helix-turn-he	97.23
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.23
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.19
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.13
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.11
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.1
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.1
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.04
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	96.99
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	96.97
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	96.95
3sso_A	419	Methyltransferase; macrolide, natural product, ros	96.95
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	96.94
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.89
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.87
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	96.86
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	96.84
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.84
1y0u_A	96	Arsenical resistance operon repressor, putative; s	96.82
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.82
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	96.82
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	96.8
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	96.78
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	96.74
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	96.7
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	96.66
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	96.64
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.5
3ll7_A	410	Putative methyltransferase; methytransferase, stru	96.38
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	96.31
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	96.29
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	96.28
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	96.27
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	96.26
3ech_A	142	MEXR, multidrug resistance operon repressor; winge	96.26
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	96.26
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.24
3jth_A	98	Transcription activator HLYU; transcription factor	96.24
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	96.24
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	96.22
1ub9_A	100	Hypothetical protein PH1061; helix-turn-helix moti	96.22
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	96.2
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	96.19
3pqk_A	102	Biofilm growth-associated repressor; helix-turn-he	96.19
3mq0_A	275	Transcriptional repressor of the blcabc operon; he	96.16
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	96.16
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.13
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	96.11
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	96.1
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	96.06
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	96.04
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	96.0
1r7j_A	95	Conserved hypothetical protein SSO10A; winged heli	95.94
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	95.91
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	95.9
1tbx_A	99	ORF F-93, hypothetical 11.0 kDa protein; sulfolobu	95.87
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	95.87
2hzt_A	107	Putative HTH-type transcriptional regulator YTCD;	95.85
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	95.84
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	95.81
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	95.79
3df8_A	111	Possible HXLR family transcriptional factor; APC89	95.79
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	95.78
1on2_A	142	Transcriptional regulator MNTR; helix-turn-helix,	95.7
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	95.67
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	95.63
1mkm_A	249	ICLR transcriptional regulator; structural genomic	95.61
2gxg_A	146	146AA long hypothetical transcriptional regulator;	95.61
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	95.6
2xrn_A	241	HTH-type transcriptional regulator TTGV; DNA-bindi	95.51
3f6v_A	151	Possible transcriptional regulator, ARSR family pr	95.48
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.47
2jsc_A	118	Transcriptional regulator RV1994C/MT2050; cadmium,	95.46
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	95.43
1r1u_A	106	CZRA, repressor protein; zinc, DNA binding, transc	95.42
2y75_A	129	HTH-type transcriptional regulator CYMR; DNA bindi	95.4
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	95.36
1oyi_A	82	Double-stranded RNA-binding protein; (alpha+beta)	95.35
2g7u_A	257	Transcriptional regulator; ICLR family, structural	95.34
2kko_A	108	Possible transcriptional regulatory protein (possi	95.31
3bja_A	139	Transcriptional regulator, MARR family, putative;	95.3
3k0l_A	162	Repressor protein; helix-turn-helix, structural ge	95.3
4a5n_A	131	Uncharacterized HTH-type transcriptional regulato;	95.29
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	95.23
3g3z_A	145	NMB1585, transcriptional regulator, MARR family; t	95.21
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	95.2
2ia2_A	265	Putative transcriptional regulator; SAD, PSI-2, st	95.18
1yyv_A	131	Putative transcriptional regulator; reductive meth	95.18
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	95.17
3r4k_A	260	Transcriptional regulator, ICLR family; DNA/RNA-bi	95.17
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	95.12
3bdd_A	142	Regulatory protein MARR; putative multiple antibio	95.08
3nrv_A	148	Putative transcriptional regulator (MARR/EMRR FAM;	95.07
3fm5_A	150	Transcriptional regulator; MCSG, PF04017, PSI, MAR	95.03
2fsw_A	107	PG_0823 protein; alpha-beta structure, helix-turn-	95.02
2wte_A	244	CSA3; antiviral protein, viral resistance, winged	95.0
3oop_A	143	LIN2960 protein; protein structure initiative, PSI	95.0
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	94.99
3k69_A	162	Putative transcription regulator; putative transcr	94.96
3cdh_A	155	Transcriptional regulator, MARR family; helix-turn	94.96
2nnn_A	140	Probable transcriptional regulator; structural gen	94.94
3eco_A	139	MEPR; mutlidrug efflux pump regulator winged helix	94.92
1r1t_A	122	Transcriptional repressor SMTB; zinc, transcriptio	94.91
1z7u_A	112	Hypothetical protein EF0647; winged-helix-turn-hel	94.82
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	94.82
1jgs_A	138	Multiple antibiotic resistance protein MARR; trans	94.78
3bpv_A	138	Transcriptional regulator; MARR, DNA binding, tran	94.77
3lwf_A	159	LIN1550 protein, putative transcriptional regulato	94.76
2eth_A	154	Transcriptional regulator, putative, MAR family; M	94.76
2hr3_A	147	Probable transcriptional regulator; MCSG, structur	94.75
2bv6_A	142	MGRA, HTH-type transcriptional regulator MGRA; mul	94.72
2nyx_A	168	Probable transcriptional regulatory protein, RV14;	94.7
2o0y_A	260	Transcriptional regulator; ICLR-family, structural	94.69
3kp7_A	151	Transcriptional regulator TCAR; multiple drug resi	94.67
1s3j_A	155	YUSO protein; structural genomics, MARR transcript	94.66
3s2w_A	159	Transcriptional regulator, MARR family; structural	94.65
3e6m_A	161	MARR family transcriptional regulator; APC88769, s	94.62
3hsr_A	140	HTH-type transcriptional regulator SARZ; helix-tur	94.6
2fa5_A	162	Transcriptional regulator MARR/EMRR family; multip	94.58
1z91_A	147	Organic hydroperoxide resistance transcriptional;	94.57
2rdp_A	150	Putative transcriptional regulator MARR; PFAM PF01	94.56
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	94.55
2lkp_A	119	Transcriptional regulator, ARSR family; symmetric	94.53
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	94.47
3jw4_A	148	Transcriptional regulator, MARR/EMRR family; DNA-b	94.47
1ylf_A	149	RRF2 family protein; structural genomics, transcri	94.43
2f2e_A	146	PA1607; transcription factor, helix-TRUN-helix, AP	94.43
3bro_A	141	Transcriptional regulator; helix_TURN_helix, multi	94.43
2lnb_A	80	Z-DNA-binding protein 1; structural genomics, nort	94.42
2x4h_A	139	Hypothetical protein SSO2273; transcription; 2.30A	94.42
2a61_A	145	Transcriptional regulator TM0710; APC4350, MCSG, m	94.4
3t8r_A	143	Staphylococcus aureus CYMR; transcriptional regula	94.4
2qww_A	154	Transcriptional regulator, MARR family; YP_013417.	94.39
4hbl_A	149	Transcriptional regulator, MARR family; HTH, trans	94.38
2frh_A	127	SARA, staphylococcal accessory regulator A; winged	94.36
2zkz_A	99	Transcriptional repressor PAGR; protein-DNA, HTH m	94.33
3bj6_A	152	Transcriptional regulator, MARR family; helix-turn	94.3
2pex_A	153	Transcriptional regulator OHRR; transcription regu	94.29
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	94.28
1sfx_A	109	Conserved hypothetical protein AF2008; structural	94.28
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	94.24
1lj9_A	144	Transcriptional regulator SLYA; HTH DNA binding pr	94.23
2fbh_A	146	Transcriptional regulator PA3341; MARR, transcript	94.22
3cjn_A	162	Transcriptional regulator, MARR family; silicibact	94.17
2h09_A	155	Transcriptional regulator MNTR; transcription regu	93.99
2fbi_A	142	Probable transcriptional regulator; MARR, APC5816,	93.98
3tgn_A	146	ADC operon repressor ADCR; helix-turn-helix, trans	93.76
3deu_A	166	Transcriptional regulator SLYA; MARR, WING-helix,	93.75
3u2r_A	168	Regulatory protein MARR; structural genomics, PSI-	93.75
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	93.63
3boq_A	160	Transcriptional regulator, MARR family; MARR famil	93.63
4g6q_A	182	Putative uncharacterized protein; structural genom	93.6
3f3x_A	144	Transcriptional regulator, MARR family, putative;	93.48
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	93.24
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	93.19
2pn6_A	150	ST1022, 150AA long hypothetical transcriptional re	93.06
2pg4_A	95	Uncharacterized protein; structural genomics, join	92.98
4aik_A	151	Transcriptional regulator SLYA; transcription, tra	92.96
2p4w_A	202	Transcriptional regulatory protein ARSR family; ar	92.91
1bja_A	95	Transcription regulatory protein MOTA; activation	92.91
2qvo_A	95	Uncharacterized protein AF_1382; PSI, structural g	92.85
2fxa_A	207	Protease production regulatory protein HPR; protea	92.8
2cfx_A	144	HTH-type transcriptional regulator LRPC; transcrip	92.77
3nqo_A	189	MARR-family transcriptional regulator; structural	92.76
3hrs_A	214	Metalloregulator SCAR; DTXR/MNTR family member, tr	92.74
2obp_A	96	Putative DNA-binding protein; structural genomics,	92.7
2w25_A	150	Probable transcriptional regulatory protein; trans	92.65
3r0a_A	123	Putative transcriptional regulator; structural gen	92.65
1xd7_A	145	YWNA; structural genomics, protein structure initi	92.48
4b8x_A	147	SCO5413, possible MARR-transcriptional regulator;	92.39
2p5v_A	162	Transcriptional regulator, LRP/ASNC family; NMB057	92.31
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	92.3
2dbb_A	151	Putative HTH-type transcriptional regulator PH006;	92.27
3u1d_A	151	Uncharacterized protein; GNTR-superfamily, structu	92.26
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	92.2
2cyy_A	151	Putative HTH-type transcriptional regulator PH151;	92.16
3i4p_A	162	Transcriptional regulator, ASNC family; PSI, struc	91.97
2fbk_A	181	Transcriptional regulator, MARR family; winged-hel	91.96
3lkd_A	542	Type I restriction-modification system methyltrans	91.91
1i1g_A	141	Transcriptional regulator LRPA; helix-turn-helix,	91.89
2dk5_A	91	DNA-directed RNA polymerase III 39 kDa polypeptide	91.84
2e1c_A	171	Putative HTH-type transcriptional regulator PH151;	91.79
2d1h_A	109	ST1889, 109AA long hypothetical transcriptional re	91.75
2vn2_A	128	DNAD, chromosome replication initiation protein; D	91.67
1q1h_A	110	TFE, transcription factor E, TFE; TFIIE, transcrip	91.6
2cg4_A	152	Regulatory protein ASNC; DNA binding, FFRP, LRP fa	91.6
2ia0_A	171	Putative HTH-type transcriptional regulator PF086;	91.51
1p6r_A	82	Penicillinase repressor; transcription regulation,	91.42
4esf_A	117	PADR-like transcriptional regulator; PADR family,	91.39
2qlz_A	232	Transcription factor PF0095; 2.50A {Pyrococcus fur	91.37
2k4b_A	99	Transcriptional regulator; DNA binding protein, wi	91.24
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	91.15
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	91.04
3khk_A	544	Type I restriction-modification system methylation	91.02
1okr_A	123	MECI, methicillin resistance regulatory protein ME	90.78
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	90.73
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	90.58
2v79_A	135	DNA replication protein DNAD; primosome, DNA-bindi	90.48
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	90.44
2esh_A	118	Conserved hypothetical protein TM0937; APC5794, st	90.4
1p4x_A	250	Staphylococcal accessory regulator A homologue; wi	90.25
1uly_A	192	Hypothetical protein PH1932; helix-turn-helix, str	90.23
3f8b_A	116	Transcriptional regulator, PADR-like family; winge	90.18
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	89.49
4fx0_A	148	Probable transcriptional repressor protein; helix-	89.3
1ku9_A	152	Hypothetical protein MJ223; putative transcription	89.21
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	88.9
3hhh_A	116	Transcriptional regulator, PADR family; PF03551, s	88.88
3elk_A	117	Putative transcriptional regulator TA0346; structu	88.74
1sfu_A	75	34L protein; protein/Z-DNA complex, DNA binding pr	88.72
2xvc_A	59	ESCRT-III, SSO0910; cell cycle, cell division, cyt	88.24
2fe3_A	145	Peroxide operon regulator; oxidative stress regula	87.98
1v4r_A	102	Transcriptional repressor; helix-turn-helix, winge	87.69
1j5y_A	187	Transcriptional regulator, biotin repressor famil;	87.58
2o03_A	131	Probable zinc uptake regulation protein FURB; DNA-	87.57
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	87.12
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	86.95
3cta_A	230	Riboflavin kinase; structural genomics, transferas	86.89
1hsj_A	487	Fusion protein consisting of staphylococcus access	86.84
1xma_A	145	Predicted transcriptional regulator; southea colla	86.42
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	86.0
2yu3_A	95	DNA-directed RNA polymerase III 39 kDa polypeptide	85.89
3i71_A	68	Ethanolamine utilization protein EUTK; helix-turn-	85.38
1fx7_A	230	Iron-dependent repressor IDER; DTXR, iron-dependen	85.15
2zig_A	297	TTHA0409, putative modification methylase; methylt	85.11
1sd4_A	126	Penicillinase repressor; BLAI, MECI, methicillin,	85.03
3l7w_A	108	Putative uncharacterized protein SMU.1704; PADR, t	84.8
1yg2_A	179	Gene activator APHA; virulence factor, winged heli	84.75
2g9w_A	138	Conserved hypothetical protein; DNA-binding domain	84.64
4esb_A	115	Transcriptional regulator, PADR family; DNA bindin	84.62
2o0m_A	345	Transcriptional regulator, SORC family; structural	84.28
3mwm_A	139	ZUR, putative metal uptake regulation protein; FUR	83.92
1z05_A	429	Transcriptional regulator, ROK family; structural	83.68
2vxz_A	165	Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Py	83.3
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	83.11
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	83.1
2xig_A	150	Ferric uptake regulation protein; hpfur, transcrip	82.35
1jhg_A	101	Trp operon repressor; complex (regulatory protein-	81.53
2qq9_A	226	Diphtheria toxin repressor; regulator, DTXR, helix	81.48
1mzb_A	136	Ferric uptake regulation protein; ferric uptake re	81.47
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	81.14
3lmm_A	583	Uncharacterized protein; multi-domained alpha-beta	80.9
2p8t_A	200	Hypothetical protein PH0730; pyrococcus horikoshii	80.34

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=100.00  E-value=8e-42  Score=309.91  Aligned_cols=261  Identities=52%  Similarity=0.914  Sum_probs=220.7

Q ss_pred             CCCCccccccccCCCcChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCC-CCCCCcchHHH
Q 046424            1 MGSLQDDHQVMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPT-NNKKAPIILDR   79 (266)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~-~~~~~~~~l~r   79 (266)
                      |||..+++    .++|+++++..+++++++++.+++|++|++||||++|.+.|.+|+|++|||+++|+ .+|..+..|+|
T Consensus         5 ~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~r   80 (364)
T 3p9c_A            5 MGSTAADM----AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDR   80 (364)
T ss_dssp             ------------CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHH
T ss_pred             CCCCCCCc----cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHH
Confidence            78877773    66778999999999999999999999999999999999853238999999999995 22212338999


Q ss_pred             HHHHHhcCCccccccccCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhcc
Q 046424           80 MLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHN  159 (266)
Q Consensus        80 lLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~  159 (266)
                      +||+|++.|+|++....+.+|..++.|++|+.+..|+.++++.++.+++.+.+.+.++..|.+|.+++++|.++|+.++ 
T Consensus        81 lLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~-  159 (364)
T 3p9c_A           81 ILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAY-  159 (364)
T ss_dssp             HHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHH-
T ss_pred             HHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhc-
Confidence            9999999999998621111111136899999999988776667899988877677888999999999999999999999 


Q ss_pred             CCcchhccccChhHHHHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhh
Q 046424          160 GMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH  239 (266)
Q Consensus       160 g~~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~  239 (266)
                      |.++|+|+..+|+..+.|+++|...+....+.+++.+++|++..+|||||||+|.++..+++++|+++++++|+|++++.
T Consensus       160 g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~  239 (364)
T 3p9c_A          160 GMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISE  239 (364)
T ss_dssp             SSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT
T ss_pred             CCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHh
Confidence            89999999999999999999999988877788899887688889999999999999999999999999999999999999


Q ss_pred             CCCCCCceEEeccCCCCCCCCCEEEeC
Q 046424          240 APSCPGVEHVGGDMFVEVPKGQAIFMK  266 (266)
Q Consensus       240 a~~~~ri~~~~gD~f~~~P~~D~~~lk  266 (266)
                      ++..+||+++.+|||+++|.+|+|+++
T Consensus       240 a~~~~~v~~~~~D~~~~~p~~D~v~~~  266 (364)
T 3p9c_A          240 APQFPGVTHVGGDMFKEVPSGDTILMK  266 (364)
T ss_dssp             CCCCTTEEEEECCTTTCCCCCSEEEEE
T ss_pred             hhhcCCeEEEeCCcCCCCCCCCEEEeh
Confidence            998899999999999999988999874

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=100.00  E-value=4.1e-42  Score=310.62  Aligned_cols=238  Identities=21%  Similarity=0.368  Sum_probs=210.5

Q ss_pred             ChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccccc
Q 046424           17 DEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVS   96 (266)
Q Consensus        17 ~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~   96 (266)
                      .++++..|++++.||+.+++|++|++|||||.|.+.+ +|+|++|||+++|+    +++.+.|+||+|++.|+|++..+.
T Consensus         5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~-~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~   79 (353)
T 4a6d_A            5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP-GPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRG   79 (353)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS-SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC-CCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccC
Confidence            3478888999999999999999999999999998753 48999999999999    999999999999999999865321


Q ss_pred             CCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhcc--CCcchhccccChhHH
Q 046424           97 NKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHN--GMDGFAAAAKDERIN  174 (266)
Q Consensus        97 ~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~--g~~~~~~~~~~p~~~  174 (266)
                         +  .+.|++|+++..|+....+.++.+++.+.. +..+..|.+|.+++++++++|...++  +.++|+++.++|+..
T Consensus        80 ---~--~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~  153 (353)
T 4a6d_A           80 ---G--KAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGER  153 (353)
T ss_dssp             ---T--EEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHH
T ss_pred             ---c--cceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHH
Confidence               1  678999999987766665678888887764 56778999999999999999999884  357899999999999


Q ss_pred             HHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC------CCCceE
Q 046424          175 NLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS------CPGVEH  248 (266)
Q Consensus       175 ~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~------~~ri~~  248 (266)
                      ..|+++|...+....+.+++.++ |++..+|||||||+|.++.+++++||+++++++|+|+|++.++.      .+||++
T Consensus       154 ~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~  232 (353)
T 4a6d_A          154 LQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDF  232 (353)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceee
Confidence            99999999998888889999999 99999999999999999999999999999999999999988753      289999


Q ss_pred             EeccCCCC-CCCCCEEEeC
Q 046424          249 VGGDMFVE-VPKGQAIFMK  266 (266)
Q Consensus       249 ~~gD~f~~-~P~~D~~~lk  266 (266)
                      ++||||++ .|.+|+|+|+
T Consensus       233 ~~gD~~~~~~~~~D~~~~~  251 (353)
T 4a6d_A          233 QEGDFFKDPLPEADLYILA  251 (353)
T ss_dssp             EESCTTTSCCCCCSEEEEE
T ss_pred             ecCccccCCCCCceEEEee
Confidence            99999995 5556999985

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=100.00  E-value=3.4e-41  Score=306.16  Aligned_cols=264  Identities=55%  Similarity=0.900  Sum_probs=218.0

Q ss_pred             CCCCccccc--cccCCCcChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhc-CC-CCCCHHHHHhhCCCCCCCCcch
Q 046424            1 MGSLQDDHQ--VMLKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKA-SP-TQLSSSEIASQLPTNNKKAPII   76 (266)
Q Consensus         1 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~-g~-~~~t~~elA~~~~~~~~~~~~~   76 (266)
                      |||+.+++.  .| .+.++++++..+++++.|++.+++|++|++||||+.|.+. |+ +|+|++|||+++|..+|.+++.
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~   79 (368)
T 3reo_A            1 MGSTGNAEIQIIP-THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVM   79 (368)
T ss_dssp             -----------------CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHH
T ss_pred             CCCcccccccccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhh
Confidence            788888864  34 6678899999999999999999999999999999999984 41 3799999999998312212348


Q ss_pred             HHHHHHHHhcCCccccccccCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhh
Q 046424           77 LDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMK  156 (266)
Q Consensus        77 l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~  156 (266)
                      |+|+||+|++.|+|++......+|..+++|++|+.++.|+.++++.++++++.+.+.+.++..|.+|.+++++|.++|+.
T Consensus        80 l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~  159 (368)
T 3reo_A           80 LDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNK  159 (368)
T ss_dssp             HHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHH
T ss_pred             HHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHH
Confidence            99999999999999985110011111368999999999987776678999988877778889999999999999999999


Q ss_pred             hccCCcchhccccChhHHHHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHH
Q 046424          157 AHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHV  236 (266)
Q Consensus       157 ~~~g~~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~v  236 (266)
                      ++ |.++|+|+..+|+..+.|+++|...+....+.+++.+++|++..+|||||||+|.++..+++++|+++++++|+|++
T Consensus       160 ~~-g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~  238 (368)
T 3reo_A          160 AY-GMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHV  238 (368)
T ss_dssp             HS-SSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH
T ss_pred             Hh-CCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHH
Confidence            99 89999999999999999999999988877778888887678889999999999999999999999999999999999


Q ss_pred             HhhCCCCCCceEEeccCCCCCCCCCEEEeC
Q 046424          237 LKHAPSCPGVEHVGGDMFVEVPKGQAIFMK  266 (266)
Q Consensus       237 i~~a~~~~ri~~~~gD~f~~~P~~D~~~lk  266 (266)
                      ++.++..+||+++.+|||+++|.+|+|+++
T Consensus       239 ~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~  268 (368)
T 3reo_A          239 IQDAPAFSGVEHLGGDMFDGVPKGDAIFIK  268 (368)
T ss_dssp             HTTCCCCTTEEEEECCTTTCCCCCSEEEEE
T ss_pred             HHhhhhcCCCEEEecCCCCCCCCCCEEEEe
Confidence            999998899999999999999988999874

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=100.00  E-value=2.3e-37  Score=278.72  Aligned_cols=232  Identities=21%  Similarity=0.260  Sum_probs=208.6

Q ss_pred             cChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccc
Q 046424           16 RDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLV   95 (266)
Q Consensus        16 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~   95 (266)
                      ...++...++++++|++.+++|++|++||||+.|.+ |  |+|++|||+++|+    +++.++|+||+|++.|+|++.  
T Consensus        18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~-g--~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~~--   88 (348)
T 3lst_A           18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD-G--PRTPAELAAATGT----DADALRRVLRLLAVRDVVRES--   88 (348)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT-S--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC-C--CCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEec--
Confidence            346788899999999999999999999999999986 4  9999999999999    999999999999999999984  


Q ss_pred             cCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHH
Q 046424           96 SNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINN  175 (266)
Q Consensus        96 ~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~  175 (266)
                             ++.|++|+++..|..+++ .++.+++.+...+.++..|.+|++++++|+++|+..+ |.++|+|+.++|+..+
T Consensus        89 -------~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~-g~~~~~~~~~~~~~~~  159 (348)
T 3lst_A           89 -------DGRFALTDKGAALRSDSP-VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIF-GSSLDAYFDGDAEVEA  159 (348)
T ss_dssp             -------TTEEEECTTTGGGSTTSS-SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHH-SSCHHHHHTTCHHHHH
T ss_pred             -------CCEEecCHHHHHHhcCCC-ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHh-CCCHHHHHHhCHHHHH
Confidence                   689999999998876543 5788888776666678999999999999999999988 8889999999999999


Q ss_pred             HHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-----CCCceEEe
Q 046424          176 LFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-----CPGVEHVG  250 (266)
Q Consensus       176 ~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-----~~ri~~~~  250 (266)
                      .|+++|...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|+++...+.     .+||+++.
T Consensus       160 ~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~  238 (348)
T 3lst_A          160 LYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVE  238 (348)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEE
T ss_pred             HHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEe
Confidence            9999999998887888999998 98899999999999999999999999999999999998883321     26899999


Q ss_pred             ccCCCCCCCCCEEEeC
Q 046424          251 GDMFVEVPKGQAIFMK  266 (266)
Q Consensus       251 gD~f~~~P~~D~~~lk  266 (266)
                      +|+|+++|..|+|+++
T Consensus       239 ~d~~~~~p~~D~v~~~  254 (348)
T 3lst_A          239 GDFLREVPHADVHVLK  254 (348)
T ss_dssp             CCTTTCCCCCSEEEEE
T ss_pred             cCCCCCCCCCcEEEEe
Confidence            9999989944999873

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=100.00  E-value=1.3e-36  Score=274.70  Aligned_cols=247  Identities=30%  Similarity=0.442  Sum_probs=212.2

Q ss_pred             CcChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccc
Q 046424           15 ARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNL   94 (266)
Q Consensus        15 ~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~   94 (266)
                      .+..++...+++++++++.+++|++|++||||+.|...+ +|+|++|||+++|+ +|.+++.++|+||+|++.|+|++..
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~-~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~   82 (358)
T 1zg3_A            5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG-KPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTI   82 (358)
T ss_dssp             SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT-SCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC-CCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEec
Confidence            577888899999999999999999999999999998753 28999999999999 3334779999999999999999751


Q ss_pred             cc-CC-CCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcC--CchhhhhccCCcchhccccC
Q 046424           95 VS-NK-DGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEG--SVPFMKAHNGMDGFAAAAKD  170 (266)
Q Consensus        95 ~~-~~-~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g--~~~f~~~~~g~~~~~~~~~~  170 (266)
                      .. .+ +|..++.|++|+.+..|+.+++ .++.+++.+.+.+.++..|.+|+++++++  .++|+.++ |.++|+|+.++
T Consensus        83 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~-g~~~~~~~~~~  160 (358)
T 1zg3_A           83 VKGKEGDEEEEIAYSLTPPSKLLISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECAT-GESFWDFLNKD  160 (358)
T ss_dssp             ECCSSSSCCCEEEEEECHHHHTTCTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHH-SSCHHHHHTSG
T ss_pred             ccccccCCCCCCEEeCCHHHHHHhCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHh-CCCHHHHHhcC
Confidence            00 00 0100378999999998886654 68899988876677889999999999998  78899888 88999999999


Q ss_pred             hhHHH--HHHHHHHhcchhhHHHHHHHcc-CCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCce
Q 046424          171 ERINN--LFNQSMHNHTTIVMKEILEIYK-GFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVE  247 (266)
Q Consensus       171 p~~~~--~f~~~m~~~~~~~~~~i~~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~  247 (266)
                      |+..+  .|+++|...+.... .+++.++ .|++..+|||||||+|.++..+++++|+++++++|+|.+++.++..++|+
T Consensus       161 p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~  239 (358)
T 1zg3_A          161 SESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLN  239 (358)
T ss_dssp             GGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEE
T ss_pred             hhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcE
Confidence            99999  99999999887665 7888882 27788999999999999999999999999999999999999988777899


Q ss_pred             EEeccCCCCCCCCCEEEeC
Q 046424          248 HVGGDMFVEVPKGQAIFMK  266 (266)
Q Consensus       248 ~~~gD~f~~~P~~D~~~lk  266 (266)
                      ++.+|+|+++|..|+|+++
T Consensus       240 ~~~~d~~~~~~~~D~v~~~  258 (358)
T 1zg3_A          240 FVGGDMFKSIPSADAVLLK  258 (358)
T ss_dssp             EEECCTTTCCCCCSEEEEE
T ss_pred             EEeCccCCCCCCceEEEEc
Confidence            9999999988877999874

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=100.00  E-value=6.3e-37  Score=278.08  Aligned_cols=231  Identities=22%  Similarity=0.372  Sum_probs=208.8

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccC
Q 046424           18 EQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSN   97 (266)
Q Consensus        18 ~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~   97 (266)
                      .+...++++++.+++.+++|++|++||||+.|.+ |  |+|++|||+++|+    +++.++|+||+|++.|+|++..   
T Consensus        36 ~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~-g--~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~~---  105 (369)
T 3gwz_A           36 AAAEETVNDILQGAWKARAIHVAVELGVPELLQE-G--PRTATALAEATGA----HEQTLRRLLRLLATVGVFDDLG---  105 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT-S--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEECS---
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEeC---
Confidence            4667889999999999999999999999999986 4  9999999999999    9999999999999999999862   


Q ss_pred             CCCccccc-eecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHH
Q 046424           98 KDGSVQRL-YGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNL  176 (266)
Q Consensus        98 ~~~~~~~~-y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~  176 (266)
                           ++. |.+|++++.|..+.+ .++.+++.+...+..+..|.+|.++++++.++|...+ |.++|+|+.++|+..+.
T Consensus       106 -----~~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~-g~~~~~~~~~~~~~~~~  178 (369)
T 3gwz_A          106 -----HDDLFAQNALSAVLLPDPA-SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVAN-GTSFWQLTHEDPKAREL  178 (369)
T ss_dssp             -----STTEEECCHHHHTTSCCTT-CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHH-SSCHHHHHHHCHHHHHH
T ss_pred             -----CCceEecCHHHHHHhcCCc-hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhc-CCCHHHHHHhCHHHHHH
Confidence                 678 999999999865543 5788888877666677899999999999999999988 88899999999999999


Q ss_pred             HHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEE
Q 046424          177 FNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHV  249 (266)
Q Consensus       177 f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~  249 (266)
                      |+++|...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|.+++.+++       .+||+++
T Consensus       179 f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~  257 (369)
T 3gwz_A          179 FNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEIL  257 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             HHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEe
Confidence            999999988887788999998 88889999999999999999999999999999999999988764       2789999


Q ss_pred             eccCCCCCCCC-CEEEeC
Q 046424          250 GGDMFVEVPKG-QAIFMK  266 (266)
Q Consensus       250 ~gD~f~~~P~~-D~~~lk  266 (266)
                      .+|+++++|.+ |+|+++
T Consensus       258 ~~d~~~~~p~~~D~v~~~  275 (369)
T 3gwz_A          258 PGDFFETIPDGADVYLIK  275 (369)
T ss_dssp             ECCTTTCCCSSCSEEEEE
T ss_pred             ccCCCCCCCCCceEEEhh
Confidence            99999989965 999873

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=100.00  E-value=1.9e-36  Score=273.06  Aligned_cols=241  Identities=27%  Similarity=0.395  Sum_probs=212.3

Q ss_pred             CCcChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           14 PARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        14 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +.|..++..++++++.+++.+++|++++++|||+.|...+ +++|++|||+++|+ +|.+++.++|+||+|++.|+|++.
T Consensus        10 ~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~-~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~   87 (352)
T 1fp2_A           10 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG-KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEII   87 (352)
T ss_dssp             STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT-SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC-CCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEe
Confidence            4677889999999999999999999999999999998753 28999999999999 222377899999999999999976


Q ss_pred             cccCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHh-cCCchhhhhccCCcchhccccChh
Q 046424           94 LVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALL-EGSVPFMKAHNGMDGFAAAAKDER  172 (266)
Q Consensus        94 ~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~-~g~~~f~~~~~g~~~~~~~~~~p~  172 (266)
                      .    +|  ++.|++|+.+..|+.+++ .++.+++.+...+.++..|.+|+++++ +|+++|+.++ |.++|+|+.++|+
T Consensus        88 ~----~~--~~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~-g~~~~~~~~~~~~  159 (352)
T 1fp2_A           88 T----KE--EESYALTVASELLVRGSD-LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTL-GSGFWDFLDKNPE  159 (352)
T ss_dssp             E----SS--SEEEEECHHHHTTSTTSS-SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHH-SSCHHHHHHHCHH
T ss_pred             c----CC--CCeEeCCHHHHHHhCCCC-ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHc-CCCHHHHHHhChH
Confidence            1    01  579999999998886654 578998887766777889999999999 8889999988 8899999999999


Q ss_pred             HHHHHHHHHHhcchhhHHHHHHHc--cCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEEe
Q 046424          173 INNLFNQSMHNHTTIVMKEILEIY--KGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVG  250 (266)
Q Consensus       173 ~~~~f~~~m~~~~~~~~~~i~~~~--~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~  250 (266)
                      ..+.|+++|...+....+. ++.+  + |++..+|||||||+|.++..+++++|+++++++|+|.+++.++..++|+++.
T Consensus       160 ~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~  237 (352)
T 1fp2_A          160 YNTSFNDAMASDSKLINLA-LRDCDFV-FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVG  237 (352)
T ss_dssp             HHHHHHHHHHHTHHHHHHH-HHTCHHH-HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEE
T ss_pred             HHHHHHHHHHhcchhhhhH-HHhcccc-cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEe
Confidence            9999999999988776666 7777  4 7788999999999999999999999999999999999999998878899999


Q ss_pred             ccCCCCCCCCCEEEeC
Q 046424          251 GDMFVEVPKGQAIFMK  266 (266)
Q Consensus       251 gD~f~~~P~~D~~~lk  266 (266)
                      +|+++++|..|+|+++
T Consensus       238 ~d~~~~~p~~D~v~~~  253 (352)
T 1fp2_A          238 GDMFTSIPNADAVLLK  253 (352)
T ss_dssp             CCTTTCCCCCSEEEEE
T ss_pred             ccccCCCCCccEEEee
Confidence            9999988877999873

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=100.00  E-value=1.1e-35  Score=270.07  Aligned_cols=251  Identities=43%  Similarity=0.732  Sum_probs=199.6

Q ss_pred             CCcChHHHHHHH--HHHhhhhHHHHHHHHHhhChhHHHhhcCCCC---CCHHHHHhhCCCC--CCCCcchHHHHHHHHhc
Q 046424           14 PARDEQDFLLAM--ELASGAVLPMTIKSATELGLLEIMAKASPTQ---LSSSEIASQLPTN--NKKAPIILDRMLRLLAS   86 (266)
Q Consensus        14 ~~~~~~~~~~l~--~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~---~t~~elA~~~~~~--~~~~~~~l~rlLr~L~~   86 (266)
                      ..+..++...++  +++.+++.+++|++|++||||+.|.+.| +|   +|++|||+++|++  +|.+++.++|+||+|++
T Consensus        16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g-~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~   94 (372)
T 1fp1_D           16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKAT-PPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLAS   94 (372)
T ss_dssp             ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCS-STTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcC-CCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhh
Confidence            345667788888  9999999999999999999999999753 14   9999999999981  33367899999999999


Q ss_pred             CCccccccccCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcC-CchhhhhccCCcchh
Q 046424           87 YSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEG-SVPFMKAHNGMDGFA  165 (266)
Q Consensus        87 ~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g-~~~f~~~~~g~~~~~  165 (266)
                      .|+|++....+.+|...+.|++|+.+..|+.+++..++.+++.+...+.++..|.+|+++++++ +++|+.++ |.++|+
T Consensus        95 ~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~-g~~~~~  173 (372)
T 1fp1_D           95 YSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH-GVTKYE  173 (372)
T ss_dssp             TTSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------
T ss_pred             CCceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHh-CCCHHH
Confidence            9999975100001101258999999998876643247888888876677888999999999998 88999888 889999


Q ss_pred             ccccChhHHHHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCC
Q 046424          166 AAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPG  245 (266)
Q Consensus       166 ~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~r  245 (266)
                      |+.++|+..+.|+++|...+....+.+++.++.|++..+|||||||+|.++..+++++|+++++++|+|.+++.++..++
T Consensus       174 ~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~  253 (372)
T 1fp1_D          174 FMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSG  253 (372)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTT
T ss_pred             HHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCC
Confidence            99999999999999999988877778888886677889999999999999999999999999999999999999988789


Q ss_pred             ceEEeccCCCCCCCCCEEEeC
Q 046424          246 VEHVGGDMFVEVPKGQAIFMK  266 (266)
Q Consensus       246 i~~~~gD~f~~~P~~D~~~lk  266 (266)
                      |+++.+|+++++|..|+|+++
T Consensus       254 v~~~~~d~~~~~~~~D~v~~~  274 (372)
T 1fp1_D          254 IEHVGGDMFASVPQGDAMILK  274 (372)
T ss_dssp             EEEEECCTTTCCCCEEEEEEE
T ss_pred             CEEEeCCcccCCCCCCEEEEe
Confidence            999999999988877999863

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=100.00  E-value=7.5e-37  Score=273.43  Aligned_cols=228  Identities=21%  Similarity=0.289  Sum_probs=202.2

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCC
Q 046424           21 FLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDG  100 (266)
Q Consensus        21 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~  100 (266)
                      ...+++++.|++.+++|++|++||||+.|.+ |  |+|++|||+++|+    +++.++|+||+|++.|++++..      
T Consensus         6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~-g--~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~~------   72 (332)
T 3i53_A            6 AHIGLRALADLATPMAVRVAATLRVADHIAA-G--HRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRDG------   72 (332)
T ss_dssp             CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT-T--CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHcChHHHHhc-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEecC------
Confidence            3457899999999999999999999999986 4  9999999999999    9999999999999999999862      


Q ss_pred             ccccceecchhcccccCCCCCCChHHHHHHhcCchhh-hhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHHHH
Q 046424          101 SVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNM-DSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ  179 (266)
Q Consensus       101 ~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f~~  179 (266)
                        ++.|.+|++++.|..+.+ .++.+++.+...+..+ ..|.+|.+++++++++|+..+ |.++|+|+.++|+..+.|++
T Consensus        73 --~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-g~~~~~~~~~~~~~~~~f~~  148 (332)
T 3i53_A           73 --QGVYGLTEFGEQLRDDHA-AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRY-GTSFWEDLGSDPVLSASFDT  148 (332)
T ss_dssp             --TSBEEECTTGGGGSTTCT-TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHH-SSCHHHHHHHCHHHHHHHHH
T ss_pred             --CCeEEcCHhHHHHhcCCc-hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhh-CCCHHHHHHhCHHHHHHHHH
Confidence              689999999999976543 5778887665434455 789999999999999999888 78899999999999999999


Q ss_pred             HHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEecc
Q 046424          180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGD  252 (266)
Q Consensus       180 ~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD  252 (266)
                      +|...+....+.+++.++ |++..+|||||||+|.++..+++++|+++++++|+|.+++.+++       .+||+++.+|
T Consensus       149 ~m~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d  227 (332)
T 3i53_A          149 LMSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGS  227 (332)
T ss_dssp             HHHHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             HHHHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCC
Confidence            999988776667788888 88889999999999999999999999999999999999998764       2789999999


Q ss_pred             CCCCCCCC-CEEEeC
Q 046424          253 MFVEVPKG-QAIFMK  266 (266)
Q Consensus       253 ~f~~~P~~-D~~~lk  266 (266)
                      +++++|.. |+|+++
T Consensus       228 ~~~~~p~~~D~v~~~  242 (332)
T 3i53_A          228 FFDPLPAGAGGYVLS  242 (332)
T ss_dssp             TTSCCCCSCSEEEEE
T ss_pred             CCCCCCCCCcEEEEe
Confidence            99989965 999874

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.2e-35  Score=265.65  Aligned_cols=226  Identities=25%  Similarity=0.390  Sum_probs=203.2

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCC
Q 046424           19 QDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNK   98 (266)
Q Consensus        19 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~   98 (266)
                      .+...+++++++++.+++|+++++||||+.|.+ |  |+|++|||+++|+    +++.++|+||+|++.|+|++..    
T Consensus         7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~-~--~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~~----   75 (334)
T 2ip2_A            7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES-G--IDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGDT----   75 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT-T--CCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET----
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC-C--CCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEecC----
Confidence            677899999999999999999999999999976 4  8999999999999    9999999999999999999861    


Q ss_pred             CCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHHH
Q 046424           99 DGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFN  178 (266)
Q Consensus        99 ~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f~  178 (266)
                          ++.|++|+++..|. +. +.++.+++.+...+.+ ..|.+|++++++++++|+..+ |.++|+|+.++|+..+.|+
T Consensus        76 ----~~~y~~t~~s~~l~-~~-~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~-g~~~~~~~~~~~~~~~~f~  147 (334)
T 2ip2_A           76 ----RDGYANTPTSHLLR-DV-EGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAF-GEDFYSYLKRCPDAGRRFL  147 (334)
T ss_dssp             ----TTEEEECHHHHTTS-SS-TTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHH-SSCHHHHHHHCHHHHHHHH
T ss_pred             ----CCeEecCHHHHHHh-CC-CccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhc-CCCHHHHHhhChHHHHHHH
Confidence                57899999999888 43 3578888887765544 899999999999999999888 8899999999999999999


Q ss_pred             HHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEEec
Q 046424          179 QSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-------PGVEHVGG  251 (266)
Q Consensus       179 ~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~~g  251 (266)
                      ++| ..+....+.+++.++ |++ .+|+|||||+|.++..+++++|+++++++|+|.+++.++..       +||+++.+
T Consensus       148 ~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~  224 (334)
T 2ip2_A          148 LAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGG  224 (334)
T ss_dssp             HHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEES
T ss_pred             HHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecC
Confidence            999 887777788899888 888 99999999999999999999999999999999888877642       68999999


Q ss_pred             cCCCCCCCC-CEEEeC
Q 046424          252 DMFVEVPKG-QAIFMK  266 (266)
Q Consensus       252 D~f~~~P~~-D~~~lk  266 (266)
                      |+++++|.+ |+|+++
T Consensus       225 d~~~~~~~~~D~v~~~  240 (334)
T 2ip2_A          225 DMLQEVPSNGDIYLLS  240 (334)
T ss_dssp             CTTTCCCSSCSEEEEE
T ss_pred             CCCCCCCCCCCEEEEc
Confidence            999988876 999863

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=100.00  E-value=1.2e-34  Score=262.65  Aligned_cols=231  Identities=16%  Similarity=0.209  Sum_probs=191.7

Q ss_pred             CCcChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           14 PARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        14 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +.+..++..+++++++|++.+++|+++++||||+.|.+.+ +|+|++|||+++|+    +++.++|+||+|++.|+|+++
T Consensus         9 ~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~-~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~~   83 (363)
T 3dp7_A            9 QCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR-EGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILLE   83 (363)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT-TCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             chhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC-CCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEec
Confidence            3456788999999999999999999999999999999832 29999999999999    999999999999999999876


Q ss_pred             cccCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhcc-CCcchhccccChh
Q 046424           94 LVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHN-GMDGFAAAAKDER  172 (266)
Q Consensus        94 ~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~-g~~~~~~~~~~p~  172 (266)
                               +++|++|+.+..|+.+++   ....+.+ ..+.++.+|.+|++++++|++++..+++ ..++|+++.++|+
T Consensus        84 ---------~~~y~~t~~s~~L~~~~~---~~~~~~~-~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~  150 (363)
T 3dp7_A           84 ---------EDRYVLAKAGWFLLNDKM---ARVNMEF-NHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPE  150 (363)
T ss_dssp             ---------TTEEEECHHHHHHHHCHH---HHHHHHH-HHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCH
T ss_pred             ---------CCEEecccchHHhhCCCc---ccchhee-ecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHH
Confidence                     688999999988876542   2222333 2356788999999999999999888883 2789999999998


Q ss_pred             HHH----HHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-----
Q 046424          173 INN----LFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-----  243 (266)
Q Consensus       173 ~~~----~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-----  243 (266)
                      ..+    .|+++|.....   ..+++.+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.     
T Consensus       151 ~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~  226 (363)
T 3dp7_A          151 QVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLS  226 (363)
T ss_dssp             HHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcC
Confidence            766    36666665432   24455543 357799999999999999999999999999999999999887642     


Q ss_pred             --CCceEEeccCCCC---CCCC-CEEEeC
Q 046424          244 --PGVEHVGGDMFVE---VPKG-QAIFMK  266 (266)
Q Consensus       244 --~ri~~~~gD~f~~---~P~~-D~~~lk  266 (266)
                        +||+++.+|++++   +|.. |+|+++
T Consensus       227 ~~~~v~~~~~d~~~~~~~~p~~~D~v~~~  255 (363)
T 3dp7_A          227 GSERIHGHGANLLDRDVPFPTGFDAVWMS  255 (363)
T ss_dssp             TGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred             cccceEEEEccccccCCCCCCCcCEEEEe
Confidence              5899999999994   6755 999873

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=100.00  E-value=1.2e-33  Score=256.10  Aligned_cols=231  Identities=19%  Similarity=0.278  Sum_probs=204.5

Q ss_pred             ChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccccc
Q 046424           17 DEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVS   96 (266)
Q Consensus        17 ~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~   96 (266)
                      .+++...+++++.+++.+++|++++++|||+.|.. |  ++|++|||+++|+    +++.++|+||+|++.|+|++..  
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~--~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~~--   83 (374)
T 1qzz_A           13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-G--ADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGGE--   83 (374)
T ss_dssp             CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-T--CCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECCC--
T ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC-C--CCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEeC--
Confidence            46677889999999999999999999999999965 4  8999999999999    9999999999999999999851  


Q ss_pred             CCCCcccc--ceecchhcccccCCCCCCChHHHHHHhcCchhh-hhhhhHHHHHhcCCchhhhhccCCcchhccccChhH
Q 046424           97 NKDGSVQR--LYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNM-DSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERI  173 (266)
Q Consensus        97 ~~~~~~~~--~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~  173 (266)
                            ++  .|.+|+++..|..+.+ .++..++.+...+..+ ..|.+|.+.++++.++|+..+ |.++|+++..+|+.
T Consensus        84 ------~~~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-g~~~~~~~~~~~~~  155 (374)
T 1qzz_A           84 ------KQGRPLRPTRLGMLLADGHP-AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRY-GRPFWEDLSADVAL  155 (374)
T ss_dssp             ------C-CCCCEECTTGGGGSTTCT-TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHH-SSCHHHHHHHCHHH
T ss_pred             ------CCCeEEEEChHHHhhcCCCc-ccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhh-CCCHHHHHhhChHH
Confidence                  45  8999999988886553 5788887765444566 899999999999999999888 88999999999999


Q ss_pred             HHHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCc
Q 046424          174 NNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-------PGV  246 (266)
Q Consensus       174 ~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri  246 (266)
                      .+.|+++|........+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++.+       +||
T Consensus       156 ~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v  234 (374)
T 1qzz_A          156 ADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRV  234 (374)
T ss_dssp             HHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTE
T ss_pred             HHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCce
Confidence            999999999887776678888888 888899999999999999999999999999999999899877642       489


Q ss_pred             eEEeccCCCCCCCC-CEEEe
Q 046424          247 EHVGGDMFVEVPKG-QAIFM  265 (266)
Q Consensus       247 ~~~~gD~f~~~P~~-D~~~l  265 (266)
                      +++.+|+++++|.+ |+|++
T Consensus       235 ~~~~~d~~~~~~~~~D~v~~  254 (374)
T 1qzz_A          235 TVAEGDFFKPLPVTADVVLL  254 (374)
T ss_dssp             EEEECCTTSCCSCCEEEEEE
T ss_pred             EEEeCCCCCcCCCCCCEEEE
Confidence            99999999988886 99986

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=100.00  E-value=8.4e-33  Score=249.76  Aligned_cols=228  Identities=19%  Similarity=0.316  Sum_probs=197.3

Q ss_pred             cccCCCcChHHHHHHHHHHh-hhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCC
Q 046424           10 VMLKPARDEQDFLLAMELAS-GAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYS   88 (266)
Q Consensus        10 ~~~~~~~~~~~~~~l~~~~~-g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g   88 (266)
                      .+..+.|+.++..+++++++ |++.+++|+++++||||+.|.+ +  |+|++|||+++|+    +++.++|+||+|++.|
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~-~--~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g   92 (359)
T 1x19_A           20 HMMSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-G--PKDLATLAADTGS----VPPRLEMLLETLRQMR   92 (359)
T ss_dssp             EEECCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT-C--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTT
T ss_pred             ccCCccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC-C--CCCHHHHHHHhCc----ChHHHHHHHHHHHhCC
Confidence            34577788899999999997 8999999999999999999986 4  8999999999999    9999999999999999


Q ss_pred             ccccccccCCCCccccceecchhcccccCCCCC---CChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhccCCcchh
Q 046424           89 FLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDG---VSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFA  165 (266)
Q Consensus        89 ~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~  165 (266)
                      +|++.         ++.|++|+.+..++....+   .++.+++.+. .+.++..|.+|+++++++.+           |+
T Consensus        93 ll~~~---------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~-----------~~  151 (359)
T 1x19_A           93 VINLE---------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN-----------FK  151 (359)
T ss_dssp             SEEEE---------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC-----------CC
T ss_pred             CeEee---------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC-----------Cc
Confidence            99987         5699999975544444434   5788888775 35677899999999987642           67


Q ss_pred             ccccChh---HHHHHHHHHHhcch-hhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCC
Q 046424          166 AAAKDER---INNLFNQSMHNHTT-IVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAP  241 (266)
Q Consensus       166 ~~~~~p~---~~~~f~~~m~~~~~-~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~  241 (266)
                      ++..+|+   ..+.|+.+|...+. ...+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++
T Consensus       152 ~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~  230 (359)
T 1x19_A          152 GQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVN  230 (359)
T ss_dssp             CSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHH
T ss_pred             ccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHH
Confidence            7888888   89999999999988 77788899998 8888999999999999999999999999999999998998876


Q ss_pred             C-------CCCceEEeccCCC-CCCCCCEEEeC
Q 046424          242 S-------CPGVEHVGGDMFV-EVPKGQAIFMK  266 (266)
Q Consensus       242 ~-------~~ri~~~~gD~f~-~~P~~D~~~lk  266 (266)
                      .       .+||+++.+|+++ ++|.+|+|+++
T Consensus       231 ~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~  263 (359)
T 1x19_A          231 ENAAEKGVADRMRGIAVDIYKESYPEADAVLFC  263 (359)
T ss_dssp             HHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEE
T ss_pred             HHHHhcCCCCCEEEEeCccccCCCCCCCEEEEe
Confidence            3       2579999999998 56667999863

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=100.00  E-value=7.4e-33  Score=249.88  Aligned_cols=229  Identities=19%  Similarity=0.281  Sum_probs=202.8

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCC
Q 046424           19 QDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNK   98 (266)
Q Consensus        19 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~   98 (266)
                      ....++++++.+++.+++|++++++|||+.|.. +  ++|++|||+++|+    +++.++|+||+|++.|+|++..    
T Consensus        18 ~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~-~--~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~~----   86 (360)
T 1tw3_A           18 IDALRTLIRLGSLHTPMVVRTAATLRLVDHILA-G--ARTVKALAARTDT----RPEALLRLIRHLVAIGLLEEDA----   86 (360)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT-T--CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE----
T ss_pred             cchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC-C--CCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEecC----
Confidence            456778999999999999999999999999965 4  8999999999999    9999999999999999999852    


Q ss_pred             CCccccceecchhcccccCCCCCCChHHHHHHhcCch-hhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHH
Q 046424           99 DGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQV-NMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLF  177 (266)
Q Consensus        99 ~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f  177 (266)
                          +++|++|+++..|..+.+ .++..++.+...+. .+..|.+|.+.++++.++|+..+ |.++|+++..+|+....|
T Consensus        87 ----~g~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~-g~~~~~~~~~~p~~~~~f  160 (360)
T 1tw3_A           87 ----PGEFVPTEVGELLADDHP-AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIY-GKPFYEDLAGRPDLRASF  160 (360)
T ss_dssp             ----TTEEEECTTGGGGSTTST-TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHH-SSCHHHHHHTCHHHHHHH
T ss_pred             ----CCeEEeCHHHHHHhcCCc-hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhc-CCCHHHHHHhChHHHHHH
Confidence                678999999988886553 57888776654333 56899999999999999998888 889999999999999999


Q ss_pred             HHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEEe
Q 046424          178 NQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-------PGVEHVG  250 (266)
Q Consensus       178 ~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~~  250 (266)
                      +.+|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++       +||+++.
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~  239 (360)
T 1tw3_A          161 DSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVE  239 (360)
T ss_dssp             HHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             HHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEe
Confidence            99999888777778889888 888899999999999999999999999999999999888877642       4899999


Q ss_pred             ccCCCCCCCC-CEEEe
Q 046424          251 GDMFVEVPKG-QAIFM  265 (266)
Q Consensus       251 gD~f~~~P~~-D~~~l  265 (266)
                      +|+++++|.+ |+|++
T Consensus       240 ~d~~~~~~~~~D~v~~  255 (360)
T 1tw3_A          240 GDFFEPLPRKADAIIL  255 (360)
T ss_dssp             CCTTSCCSSCEEEEEE
T ss_pred             CCCCCCCCCCccEEEE
Confidence            9999988886 99886

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=100.00  E-value=3.7e-32  Score=244.61  Aligned_cols=226  Identities=17%  Similarity=0.253  Sum_probs=188.0

Q ss_pred             CCCcChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 046424           13 KPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTC   92 (266)
Q Consensus        13 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~   92 (266)
                      .+.+.+..+..+++++.+++.+++|++|+++|||+.|..    |+|++|||+++|+    +++.++|+||+|++.|+|++
T Consensus        17 ~~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~----~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~   88 (352)
T 3mcz_A           17 EDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT----GRTPAEVAASFGM----VEGKAAILLHALAALGLLTK   88 (352)
T ss_dssp             CSCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS----CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC----CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEe
Confidence            344455566669999999999999999999999999953    8999999999999    99999999999999999998


Q ss_pred             ccccCCCCccccceecchhcccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCch-hhhhccCCcchhccccCh
Q 046424           93 NLVSNKDGSVQRLYGLTPVSKYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVP-FMKAHNGMDGFAAAAKDE  171 (266)
Q Consensus        93 ~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~-f~~~~~g~~~~~~~~~~p  171 (266)
                      .         ++.|.+|+.+..++.+..+.+++.++.+.  ..++..|.+|++++++|.+. |+..       .++..+|
T Consensus        89 ~---------~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~-------~~~~~~~  150 (352)
T 3mcz_A           89 E---------GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE-------SRFAHDT  150 (352)
T ss_dssp             E---------TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH-------HHTTTCH
T ss_pred             c---------CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc-------cccccCH
Confidence            7         57899999998766555556788877654  35678999999999998654 2322       1235689


Q ss_pred             hHHHHHHHHHHhcchhhHHHHHHHccCCCC-CceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------
Q 046424          172 RINNLFNQSMHNHTTIVMKEILEIYKGFEG-LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-------  243 (266)
Q Consensus       172 ~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~-~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------  243 (266)
                      +..+.|+++|...... ...+++.++ +++ ..+|||||||+|.++..+++++|+++++++|+|.+++.++..       
T Consensus       151 ~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~  228 (352)
T 3mcz_A          151 RARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLG  228 (352)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCC
Confidence            9999999999983322 337888888 776 899999999999999999999999999999999988876642       


Q ss_pred             CCceEEeccCCCC---CCCC-CEEEeC
Q 046424          244 PGVEHVGGDMFVE---VPKG-QAIFMK  266 (266)
Q Consensus       244 ~ri~~~~gD~f~~---~P~~-D~~~lk  266 (266)
                      +||+++.+|++++   .|.+ |+|+++
T Consensus       229 ~~v~~~~~d~~~~~~~~~~~~D~v~~~  255 (352)
T 3mcz_A          229 GRVEFFEKNLLDARNFEGGAADVVMLN  255 (352)
T ss_dssp             GGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred             CceEEEeCCcccCcccCCCCccEEEEe
Confidence            5899999999994   5665 999873

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.98  E-value=1e-31  Score=239.76  Aligned_cols=220  Identities=15%  Similarity=0.169  Sum_probs=193.1

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCC
Q 046424           21 FLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDG  100 (266)
Q Consensus        21 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~  100 (266)
                      .+.+++++.+++.+++|++++++|||+.|.+ |  |+|++|||+++|+    +++.++|+||+|++.|+|++.       
T Consensus         7 ~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~-~--~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~-------   72 (335)
T 2r3s_A            7 PALFFNTVNAYQRSAAIKAAVELNVFTAISQ-G--IESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ-------   72 (335)
T ss_dssp             SHHHHHHHTTHHHHHHHHHHHHTTHHHHHTT-S--EECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChHHHHhc-C--CCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec-------
Confidence            3679999999999999999999999999986 4  8999999999999    999999999999999999875       


Q ss_pred             ccccceecchhc-ccccCCCCCCChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHHHH
Q 046424          101 SVQRLYGLTPVS-KYFVPNKDGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ  179 (266)
Q Consensus       101 ~~~~~y~~t~~s-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f~~  179 (266)
                        ++.|++|+++ ..+..+. +.++.+++.+...+..+..|.+|.+.++++.++|+      . |+++.++|+..+.|++
T Consensus        73 --~~~y~~t~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~------~-~~~~~~~~~~~~~~~~  142 (335)
T 2r3s_A           73 --AEGYRLTSDSAMFLDRQS-KFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS------S-EGTLSPEHPVWVQFAK  142 (335)
T ss_dssp             --TTEEEECHHHHHHTCTTS-TTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST------T-TGGGSTTCTHHHHHHH
T ss_pred             --CCEEecCHHHHHHhccCC-cHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC------C-cccccCCHHHHHHHHH
Confidence              6899999999 4565544 35788888877555778899999999999877643      3 7888888999999999


Q ss_pred             HHHhcchhhHHHHHHHccCC--CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEEe
Q 046424          180 SMHNHTTIVMKEILEIYKGF--EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-------PGVEHVG  250 (266)
Q Consensus       180 ~m~~~~~~~~~~i~~~~~~~--~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~~  250 (266)
                      .|...+....+.+++.++ +  .+..+|+|||||+|.++..+++++|+.+++++|++.+++.++..       +||+++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~  221 (335)
T 2r3s_A          143 AMSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIA  221 (335)
T ss_dssp             HSGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred             HHHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEe
Confidence            999988877778888888 7  78899999999999999999999999999999999888877642       5799999


Q ss_pred             ccCCC-CCCCC-CEEEe
Q 046424          251 GDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       251 gD~f~-~~P~~-D~~~l  265 (266)
                      +|+++ ++|.+ |+|++
T Consensus       222 ~d~~~~~~~~~~D~v~~  238 (335)
T 2r3s_A          222 GSAFEVDYGNDYDLVLL  238 (335)
T ss_dssp             SCTTTSCCCSCEEEEEE
T ss_pred             cccccCCCCCCCcEEEE
Confidence            99998 67776 99986

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.27  E-value=1.5e-11  Score=111.26  Aligned_cols=183  Identities=11%  Similarity=0.028  Sum_probs=115.3

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccCCCCCCC
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKDGVS  123 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~  123 (266)
                      ++|..| . +  |.|+.|||..+|+    +++.++++|+.|.+.|+++..         ++ |++|+.+..++...+..+
T Consensus        47 ~ll~~L-~-~--~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~---------~~-~~lt~~~~~~l~~~~~~~  108 (373)
T 2qm3_A           47 NVLSAV-L-A--SDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE---------DG-VKLTEKGEELVAEYGIGK  108 (373)
T ss_dssp             HHHHHH-H-H--CSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS---------SS-SEECHHHHHHHHHHTCCC
T ss_pred             HHHHHh-c-C--CCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC---------CC-EEECHHHHHHHHhcCccc
Confidence            779999 4 3  8999999999999    999999999999999999864         44 999987665543221111


Q ss_pred             hHHHHH-HhcC-----chhhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHHHHHHHhcchhhHHHHHHHcc
Q 046424          124 LAPTLL-IIQD-----QVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYK  197 (266)
Q Consensus       124 ~~~~~~-~~~~-----~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~  197 (266)
                      ..+.+. ...+     ..+...|..+.+.++....+       ...|+.....++  ....+.+         .... ..
T Consensus       109 ~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~l---------~~~~-~~  169 (373)
T 2qm3_A          109 RYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEP-------LHEFDQAYVTPE--TTVARVI---------LMHT-RG  169 (373)
T ss_dssp             CCC------------CGGGHHHHHHHHHHHTTCCCC-------CGGGTCCCBCHH--HHHHHHH---------HHHH-TT
T ss_pred             cccccchhhcCCCcchhhhHHHHHHHHHHHhcCCcc-------chhcCCeecCHH--HHHHHHH---------HHhh-cC
Confidence            111110 0000     11112344455555432211       111211111121  1111111         0011 11


Q ss_pred             CCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCC----C-CEEEe
Q 046424          198 GFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPK----G-QAIFM  265 (266)
Q Consensus       198 ~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~----~-D~~~l  265 (266)
                       .....+|+||| |+|.++..+++..|+.+++++|+ |.+++.++++      ++|+++.+|+++++|.    . |+|++
T Consensus       170 -~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~  247 (373)
T 2qm3_A          170 -DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFIT  247 (373)
T ss_dssp             -CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred             -CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEE
Confidence             12358999999 99999999999999899999999 7888877653      4899999999986653    4 99986

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.53  E-value=6.7e-08  Score=80.13  Aligned_cols=63  Identities=16%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCC-C-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPK-G-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~-~-D~~~l  265 (266)
                      ...+|+|||||+|.++..+++..|  +++++|+ |.+++.++..     ++++++.+|+.+ ++|. . |+++.
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  109 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIF  109 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEE
Confidence            468999999999999999999988  8999999 6677776542     789999999998 6665 3 98875

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.50  E-value=3.9e-07  Score=76.05  Aligned_cols=75  Identities=16%  Similarity=0.167  Sum_probs=59.1

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCC-CCCCC-CEE
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFV-EVPKG-QAI  263 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~-~~P~~-D~~  263 (266)
                      .+++.+.......+|||||||+|.++..+++++|+.+++++|+ |..++.++.    .++++++.+|+.+ +.+.. |++
T Consensus        34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v  113 (234)
T 3dtn_A           34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMV  113 (234)
T ss_dssp             HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEE
T ss_pred             HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEE
Confidence            3444443223568999999999999999999999999999999 667766543    3589999999998 56544 998


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      +.
T Consensus       114 ~~  115 (234)
T 3dtn_A          114 VS  115 (234)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.42  E-value=3.8e-07  Score=78.32  Aligned_cols=67  Identities=18%  Similarity=0.260  Sum_probs=54.7

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCC-CCCCCCEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKY--PQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFV-EVPKGQAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~--P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~P~~D~~~l  265 (266)
                      .+...+|+|||||+|.++..+++++  |+++++++|+ |..++.|+.       ..+|+++.+|+.+ +++..|++++
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~  145 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVL  145 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccccccccee
Confidence            3466899999999999999999985  6889999998 567776653       2589999999988 6665687764

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.37  E-value=9.6e-07  Score=72.23  Aligned_cols=74  Identities=14%  Similarity=0.110  Sum_probs=59.8

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCC--CC-
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVP--KG-  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P--~~-  260 (266)
                      .++..++ .....+|+|||||+|.++..+++.+|+.+++++|+ |..++.++.+      ++++++.+|+.+..+  .. 
T Consensus        31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (204)
T 3e05_A           31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP  109 (204)
T ss_dssp             HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred             HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence            3455555 56678999999999999999999999999999999 6677766542      689999999988544  23 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |++++
T Consensus       110 D~i~~  114 (204)
T 3e05_A          110 DRVFI  114 (204)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            98875

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.36  E-value=4.9e-07  Score=77.84  Aligned_cols=74  Identities=15%  Similarity=0.047  Sum_probs=57.0

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCCCCCC-
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVEVPKG-  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~P~~-  260 (266)
                      .+++.++ .....+|+|+|||+|.++..+++. +|..+++++|+ |..++.++.       .++++++.+|+.+++|.+ 
T Consensus       101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~  179 (275)
T 1yb2_A          101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM  179 (275)
T ss_dssp             -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred             HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence            4455555 666789999999999999999998 89999999999 666665543       257999999999977753 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++++
T Consensus       180 fD~Vi~  185 (275)
T 1yb2_A          180 YDAVIA  185 (275)
T ss_dssp             EEEEEE
T ss_pred             ccEEEE
Confidence             98875

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.35  E-value=1.9e-06  Score=73.38  Aligned_cols=73  Identities=15%  Similarity=0.219  Sum_probs=59.6

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCCCCceEEeccCCC-CCCCC--CEEEe
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSCPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ..+++.++ .....+|||||||+|.++..+++  |..+++++|+. ..++.++...+++++.+|+.+ ++|.+  |+++.
T Consensus        24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~  100 (261)
T 3ege_A           24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVIS  100 (261)
T ss_dssp             HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEE
T ss_pred             HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEE
Confidence            34555555 55678999999999999999998  78899999994 577777776799999999987 66653  99875

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.34  E-value=1.3e-06  Score=76.40  Aligned_cols=75  Identities=16%  Similarity=0.124  Sum_probs=58.6

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKG  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~  260 (266)
                      ..+++.++.+....+|||||||.|.++..+++++ ..+++++|+ |..++.++.+       ++|+++.+|+.+ ++|.+
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  184 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKG  184 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCC
Confidence            4455555434567899999999999999999986 678999999 5677766541       589999999998 66654


Q ss_pred             --CEEEe
Q 046424          261 --QAIFM  265 (266)
Q Consensus       261 --D~~~l  265 (266)
                        |+++.
T Consensus       185 ~fD~V~~  191 (312)
T 3vc1_A          185 AVTASWN  191 (312)
T ss_dssp             CEEEEEE
T ss_pred             CEeEEEE
Confidence              99874

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.33  E-value=3e-07  Score=77.89  Aligned_cols=74  Identities=15%  Similarity=0.140  Sum_probs=61.1

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCCC-
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPKG-  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~~-  260 (266)
                      .++..++ .....+|+|||||+|.++..+++. .|..+++++|+ |..++.++.+       +|++++.+|+.+.+|.+ 
T Consensus        84 ~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  162 (255)
T 3mb5_A           84 LIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEEN  162 (255)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCS
T ss_pred             HHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCC
Confidence            4555555 667789999999999999999999 89999999999 5677766542       56999999999887764 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++++
T Consensus       163 ~D~v~~  168 (255)
T 3mb5_A          163 VDHVIL  168 (255)
T ss_dssp             EEEEEE
T ss_pred             cCEEEE
Confidence             98875

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.33  E-value=5.3e-07  Score=73.93  Aligned_cols=72  Identities=17%  Similarity=0.276  Sum_probs=57.0

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCCC-
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKG-  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~-  260 (266)
                      .+++.++ .+. .+|||||||+|.++..++++ |..+++++|+ |..++.++..       ++++++.+|+.+ ++|.+ 
T Consensus        35 ~~~~~~~-~~~-~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  111 (219)
T 3dlc_A           35 NIINRFG-ITA-GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNY  111 (219)
T ss_dssp             HHHHHHC-CCE-EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTC
T ss_pred             HHHHhcC-CCC-CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCccc
Confidence            3445444 433 39999999999999999999 8899999999 6677666542       589999999998 77754 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |+++.
T Consensus       112 ~D~v~~  117 (219)
T 3dlc_A          112 ADLIVS  117 (219)
T ss_dssp             EEEEEE
T ss_pred             ccEEEE
Confidence             98875

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.30  E-value=9.5e-07  Score=72.96  Aligned_cols=65  Identities=22%  Similarity=0.319  Sum_probs=54.2

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-C--CCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-E--VPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~--~P~~--D~~~l  265 (266)
                      ...+|+|||||+|.++..+++.+|+.+++++|+ |..++.++.      .++|+++.+|+.+ +  +|.+  |++++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~  117 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL  117 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence            457899999999999999999999999999999 567776654      2689999999987 3  5553  88875

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.29  E-value=8.5e-07  Score=73.10  Aligned_cols=75  Identities=19%  Similarity=0.236  Sum_probs=61.0

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC-CCCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV-EVPKG  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~-~~P~~  260 (266)
                      ..+++.++ .....+|||||||+|.++..+++.. |+.+++++|+ |..++.++..      ++++++.+|+.+ +++.+
T Consensus        27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~  105 (219)
T 3dh0_A           27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN  105 (219)
T ss_dssp             HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred             HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence            35566665 6677899999999999999999997 8899999999 5677766542      589999999988 66654


Q ss_pred             --CEEEe
Q 046424          261 --QAIFM  265 (266)
Q Consensus       261 --D~~~l  265 (266)
                        |+++.
T Consensus       106 ~fD~v~~  112 (219)
T 3dh0_A          106 TVDFIFM  112 (219)
T ss_dssp             CEEEEEE
T ss_pred             CeeEEEe
Confidence              99875

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.28  E-value=2.4e-06  Score=70.55  Aligned_cols=66  Identities=14%  Similarity=0.128  Sum_probs=51.9

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhh----CCC------CCCceEEeccCCC-CCCCC-CEEE
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKH----APS------CPGVEHVGGDMFV-EVPKG-QAIF  264 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~----a~~------~~ri~~~~gD~f~-~~P~~-D~~~  264 (266)
                      .....+|||||||+|.++..+++.+|+.+++++|+.+ .++.    ++.      .++|+++.+|+.+ +++.+ |.++
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~  103 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELH  103 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEE
Confidence            4466899999999999999999999999999999954 3332    322      2589999999998 55543 5554

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.27  E-value=3.4e-06  Score=69.15  Aligned_cols=74  Identities=20%  Similarity=0.230  Sum_probs=57.4

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC--CCceEEeccCCCCCCCC--CEEE
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC--PGVEHVGGDMFVEVPKG--QAIF  264 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~--~ri~~~~gD~f~~~P~~--D~~~  264 (266)
                      ..+++.+.......+|+|||||+|.++..+++.  ..+++++|+ |..++.++..  ++++++.+|+.+..|.+  |+++
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~  112 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF  112 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence            344555543445679999999999999999999  668999998 5677776642  68999999999865543  9887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      .
T Consensus       113 ~  113 (218)
T 3ou2_A          113 F  113 (218)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.25  E-value=1.6e-06  Score=73.84  Aligned_cols=72  Identities=13%  Similarity=0.141  Sum_probs=56.7

Q ss_pred             HHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCCC--C
Q 046424          193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKG--Q  261 (266)
Q Consensus       193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~--D  261 (266)
                      ++.++......+|||||||+|.++..+++. |..+++++|+ |..++.++..       ++|+++.+|+.+ ++|.+  |
T Consensus        38 l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  116 (267)
T 3kkz_A           38 LSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELD  116 (267)
T ss_dssp             HTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEE
T ss_pred             HHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEE
Confidence            343332456789999999999999999998 8899999999 5566665531       679999999987 66654  9


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus       117 ~i~~  120 (267)
T 3kkz_A          117 LIWS  120 (267)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9875

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.24  E-value=2e-06  Score=72.54  Aligned_cols=73  Identities=14%  Similarity=0.197  Sum_probs=56.6

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCC-CCCCC--
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFV-EVPKG--  260 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~P~~--  260 (266)
                      ++..+.......+|||||||+|.++..+++.+|. +++++|+ |..++.++.       .+||+++.+|+.+ ++|.+  
T Consensus        37 ~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  115 (257)
T 3f4k_A           37 AVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEEL  115 (257)
T ss_dssp             HHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCE
T ss_pred             HHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCE
Confidence            3444432456689999999999999999999996 9999999 556666543       1579999999977 66643  


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |+++.
T Consensus       116 D~v~~  120 (257)
T 3f4k_A          116 DLIWS  120 (257)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99874

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.24  E-value=9e-07  Score=74.28  Aligned_cols=65  Identities=11%  Similarity=-0.028  Sum_probs=54.6

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCCCCCCC---CCEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFVEVPK---GQAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~~~P~---~D~~~l  265 (266)
                      ...+|+|||||+|..++.+++.+|..+++.+|+. ..++.|+.+       ++|++..+|.++++|.   .|++++
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~Ivi   90 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITI   90 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEE
Confidence            5589999999999999999999999999999995 466665542       5899999999998774   388764

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.24  E-value=1.7e-06  Score=73.16  Aligned_cols=73  Identities=21%  Similarity=0.378  Sum_probs=58.2

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----CCceEEeccCCC-CCCCC--CE
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----PGVEHVGGDMFV-EVPKG--QA  262 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~ri~~~~gD~f~-~~P~~--D~  262 (266)
                      .+++.++ .....+|||||||+|.++..+++++ ..+++++|+ |..++.++..    ++|+++.+|+.+ ++|.+  |+
T Consensus        46 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~  123 (266)
T 3ujc_A           46 KILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDL  123 (266)
T ss_dssp             HHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEE
T ss_pred             HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEE
Confidence            4445454 5567899999999999999999988 789999999 4566665532    689999999998 67654  99


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      ++.
T Consensus       124 v~~  126 (266)
T 3ujc_A          124 IYS  126 (266)
T ss_dssp             EEE
T ss_pred             EeH
Confidence            875

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.23  E-value=2.8e-06  Score=72.39  Aligned_cols=74  Identities=14%  Similarity=0.260  Sum_probs=58.8

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCC-CCCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFV-EVPKG  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~P~~  260 (266)
                      ..+++.++ .....+|||||||.|.++..+++++ ..+++++|+ |..++.++.       .++++++.+|+.+ ++|.+
T Consensus        51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  128 (273)
T 3bus_A           51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA  128 (273)
T ss_dssp             HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence            35566665 6667899999999999999999987 689999999 556665543       2589999999998 67654


Q ss_pred             --CEEEe
Q 046424          261 --QAIFM  265 (266)
Q Consensus       261 --D~~~l  265 (266)
                        |+++.
T Consensus       129 ~fD~v~~  135 (273)
T 3bus_A          129 SFDAVWA  135 (273)
T ss_dssp             CEEEEEE
T ss_pred             CccEEEE
Confidence              98874

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.23  E-value=1.5e-06  Score=73.67  Aligned_cols=74  Identities=24%  Similarity=0.344  Sum_probs=58.0

Q ss_pred             HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-CCCCC
Q 046424          189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-EVPKG  260 (266)
Q Consensus       189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~P~~  260 (266)
                      ...+++.++ .....+|||||||+|.++..++++.+  +++++|+ |..++.++.      .++++++.+|+.+ ++|.+
T Consensus        26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~  102 (260)
T 1vl5_A           26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE  102 (260)
T ss_dssp             HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred             HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence            345666665 55678999999999999999999987  8999998 557766553      2679999999988 77753


Q ss_pred             --CEEEe
Q 046424          261 --QAIFM  265 (266)
Q Consensus       261 --D~~~l  265 (266)
                        |+++.
T Consensus       103 ~fD~V~~  109 (260)
T 1vl5_A          103 RFHIVTC  109 (260)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEE
Confidence              99874

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.22  E-value=2.3e-06  Score=74.39  Aligned_cols=41  Identities=20%  Similarity=0.306  Sum_probs=36.0

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAP  241 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~  241 (266)
                      ...+|||||||+|.++..+++++|..+++++|+ |..++.|+
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~   87 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSAR   87 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHH
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            568999999999999999999999999999999 45666554

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.22  E-value=1.8e-06  Score=74.49  Aligned_cols=74  Identities=16%  Similarity=0.146  Sum_probs=57.5

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC-CE
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG-QA  262 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~-D~  262 (266)
                      +++.+.......+|||||||+|.++..+++.+|+ .+++++|+ |..++.++..     .+++++.+|+.+ +.+.. |+
T Consensus        13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~   92 (284)
T 3gu3_A           13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDI   92 (284)
T ss_dssp             HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEE
T ss_pred             HHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeE
Confidence            3444322556789999999999999999999995 89999999 5566655431     389999999998 55555 98


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      ++.
T Consensus        93 v~~   95 (284)
T 3gu3_A           93 AIC   95 (284)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.21  E-value=3.6e-06  Score=70.99  Aligned_cols=74  Identities=12%  Similarity=0.155  Sum_probs=57.5

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKG  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~  260 (266)
                      ..+++.++ .....+|||||||+|.++..+++.+ ..+++++|+ |..++.++..       ++|+++.+|+.+ +.+..
T Consensus        26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  103 (256)
T 1nkv_A           26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK  103 (256)
T ss_dssp             HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred             HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCC
Confidence            34555555 5667899999999999999999998 678999999 5677665431       589999999988 44344


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |+++.
T Consensus       104 fD~V~~  109 (256)
T 1nkv_A          104 CDVAAC  109 (256)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence             98874

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.20  E-value=3.6e-06  Score=72.63  Aligned_cols=55  Identities=27%  Similarity=0.426  Sum_probs=48.7

Q ss_pred             CCceEEEecCCc---cHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCC
Q 046424          201 GLNQLVDVAGGL---GANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFV  255 (266)
Q Consensus       201 ~~~~vvDVGGG~---G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~  255 (266)
                      +..+|||||||.   |.++..+.+.+|+.+++.+|+ |.+++.++.    .++++++.+|+++
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~  139 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRD  139 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCC
Confidence            568999999999   999888889999999999999 788887664    3789999999986

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.20  E-value=2.6e-06  Score=73.70  Aligned_cols=74  Identities=12%  Similarity=0.176  Sum_probs=58.0

Q ss_pred             HHHHHHc----cCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCC-C
Q 046424          190 KEILEIY----KGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFV-E  256 (266)
Q Consensus       190 ~~i~~~~----~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~  256 (266)
                      ..+++.+    . .....+|||||||.|.++..+++++ +.+++++|+ |..++.++.       .++|+++.+|+.+ +
T Consensus        68 ~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  145 (297)
T 2o57_A           68 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP  145 (297)
T ss_dssp             HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred             HHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence            3455555    4 6677899999999999999999987 468999999 456665543       1689999999998 7


Q ss_pred             CCCC--CEEEe
Q 046424          257 VPKG--QAIFM  265 (266)
Q Consensus       257 ~P~~--D~~~l  265 (266)
                      +|.+  |+++.
T Consensus       146 ~~~~~fD~v~~  156 (297)
T 2o57_A          146 CEDNSYDFIWS  156 (297)
T ss_dssp             SCTTCEEEEEE
T ss_pred             CCCCCEeEEEe
Confidence            7654  98875

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.19  E-value=2.1e-06  Score=72.48  Aligned_cols=74  Identities=16%  Similarity=0.224  Sum_probs=58.8

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEEeccCCCCCCCC--CEEEe
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-CPGVEHVGGDMFVEVPKG--QAIFM  265 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gD~f~~~P~~--D~~~l  265 (266)
                      .+++.++ .....+|+|||||+|.++..+++++|..+++++|+ |..++.++. .++++++.+|+.+..|.+  |+++.
T Consensus        24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~  101 (259)
T 2p35_A           24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYA  101 (259)
T ss_dssp             HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEE
T ss_pred             HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEE
Confidence            4455554 55668999999999999999999999999999999 557776654 378999999998722443  98875

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.18  E-value=2.5e-06  Score=71.95  Aligned_cols=73  Identities=14%  Similarity=0.153  Sum_probs=57.3

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCceEEeccCCC-CCCCC--CEE
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS---CPGVEHVGGDMFV-EVPKG--QAI  263 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~---~~ri~~~~gD~f~-~~P~~--D~~  263 (266)
                      .+.+.++ .....+|||||||+|.++..+++..+. +++++|+ |..++.++.   ..+++++.+|+.+ ++|.+  |++
T Consensus        35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  112 (253)
T 3g5l_A           35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV  112 (253)
T ss_dssp             HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred             HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence            3444444 335689999999999999999999776 8999999 567776654   3689999999987 66654  998


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      +.
T Consensus       113 ~~  114 (253)
T 3g5l_A          113 LS  114 (253)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.18  E-value=2.2e-06  Score=73.30  Aligned_cols=67  Identities=18%  Similarity=0.378  Sum_probs=56.2

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-CCCCC--CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      +....+|||||||+|.++..+++.+|+.+++++|+ |..++.++.      .++++++.+|+.+ ++|.+  |+++.
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  111 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV  111 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEE
Confidence            45678999999999999999999999999999999 567766653      2579999999998 66554  98875

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.18  E-value=1.7e-06  Score=71.35  Aligned_cols=66  Identities=15%  Similarity=0.169  Sum_probs=53.4

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----------CCceEEeccCCC-CCCC-C-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----------PGVEHVGGDMFV-EVPK-G-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----------~ri~~~~gD~f~-~~P~-~-D~~~  264 (266)
                      ....+|||||||+|.++..++++.|..+++++|+ |..++.++..           ++|+++.+|+.. +.+. . |+++
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            3568999999999999999999999999999999 5577766542           289999999965 4433 3 9987


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      .
T Consensus       108 ~  108 (219)
T 3jwg_A          108 V  108 (219)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.17  E-value=1.6e-06  Score=72.95  Aligned_cols=66  Identities=9%  Similarity=-0.072  Sum_probs=54.4

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCCCCCCC--C-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFVEVPK--G-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~~~P~--~-D~~~l  265 (266)
                      ....+|+|||||+|..++.+++..|..+++..|+. ..++.|+.+       +||++..+|.++.++.  . |++++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivi   96 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITI   96 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEE
Confidence            35689999999999999999999999999999995 466665542       6899999999996554  3 88764

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.17  E-value=2.2e-06  Score=70.65  Aligned_cols=66  Identities=17%  Similarity=0.180  Sum_probs=52.9

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----------CCceEEeccCCC-CCCC-C-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----------PGVEHVGGDMFV-EVPK-G-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----------~ri~~~~gD~f~-~~P~-~-D~~~  264 (266)
                      ....+|||||||+|.++..+++++|..+++++|+ |..++.++..           ++++++.+|+.. +.+. . |+++
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            3568999999999999999999999999999999 5566665431           289999999865 4442 3 9987


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      .
T Consensus       108 ~  108 (217)
T 3jwh_A          108 V  108 (217)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.16  E-value=5.2e-06  Score=70.49  Aligned_cols=64  Identities=23%  Similarity=0.305  Sum_probs=53.2

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEEeccCCC-CCCCC-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-CPGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      .+..+|||||||+|.++..++++.+  +++++|+ |..++.++. .++|+++.+|+.+ +.+.. |+++.
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~  116 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTC  116 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEE
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEE
Confidence            3568999999999999999999965  7899999 677877765 3689999999998 55555 99875

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.16  E-value=6.9e-06  Score=70.24  Aligned_cols=63  Identities=14%  Similarity=0.125  Sum_probs=54.6

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCCCCceEEeccCCC-CCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSCPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ...+|||||||+|.++..+++.+.  +++++|+. ..++.++..++|+++.+|+-+ ++|.+  |+++.
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~  105 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIA  105 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEE
Confidence            457899999999999999999875  68999985 588888888999999999987 78875  98875

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.15  E-value=5.6e-06  Score=71.84  Aligned_cols=66  Identities=21%  Similarity=0.133  Sum_probs=54.9

Q ss_pred             CCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC--------CCCceEEeccCCC-CCCC------C--
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPS--------CPGVEHVGGDMFV-EVPK------G--  260 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~--------~~ri~~~~gD~f~-~~P~------~--  260 (266)
                      ....+|||||||+|.++..+++++ |..+++++|+ |..++.++.        .++|+++.+|+.+ +++.      +  
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            467899999999999999999997 9999999999 557776643        3689999999988 5554      3  


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |+++.
T Consensus       115 D~V~~  119 (299)
T 3g5t_A          115 DMITA  119 (299)
T ss_dssp             EEEEE
T ss_pred             eEEeH
Confidence            88874

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.15  E-value=1.6e-06  Score=73.19  Aligned_cols=74  Identities=11%  Similarity=0.149  Sum_probs=60.0

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCC-CCCC
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVE-VPKG  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~-~P~~  260 (266)
                      .++..++ +....+|||+|||+|.++..+++. .|..+++++|+ |..++.++.       .++|+++.+|+.+. +|.+
T Consensus        87 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~  165 (258)
T 2pwy_A           87 AMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA  165 (258)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred             HHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence            4566665 667789999999999999999999 78999999998 667666543       26899999999984 7753


Q ss_pred             --CEEEe
Q 046424          261 --QAIFM  265 (266)
Q Consensus       261 --D~~~l  265 (266)
                        |++++
T Consensus       166 ~~D~v~~  172 (258)
T 2pwy_A          166 AYDGVAL  172 (258)
T ss_dssp             CEEEEEE
T ss_pred             CcCEEEE
Confidence              98875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.15  E-value=3.6e-06  Score=75.94  Aligned_cols=74  Identities=16%  Similarity=0.142  Sum_probs=59.6

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---------CCceEEeccCCCCCCCC
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC---------PGVEHVGGDMFVEVPKG  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---------~ri~~~~gD~f~~~P~~  260 (266)
                      .+++.++ .....+|+|||||+|.++..+++++|..+++++|. |..++.++.+         .+++++.+|+++++|.+
T Consensus       213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~  291 (375)
T 4dcm_A          213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF  291 (375)
T ss_dssp             HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred             HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence            4566665 33448999999999999999999999999999999 5577766542         25888999999988764


Q ss_pred             --CEEEe
Q 046424          261 --QAIFM  265 (266)
Q Consensus       261 --D~~~l  265 (266)
                        |+|++
T Consensus       292 ~fD~Ii~  298 (375)
T 4dcm_A          292 RFNAVLC  298 (375)
T ss_dssp             CEEEEEE
T ss_pred             CeeEEEE
Confidence              99885

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.14  E-value=3.5e-06  Score=72.43  Aligned_cols=73  Identities=21%  Similarity=0.264  Sum_probs=57.7

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCC-C-C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPK-G-Q  261 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~-~-D  261 (266)
                      .+++.++  ....+|+|||||+|..+..+++.+|+.+++++|+ |..++.++.+      ++++++.+|+++++|. . |
T Consensus       101 ~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD  178 (276)
T 2b3t_A          101 QALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFA  178 (276)
T ss_dssp             HHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEE
T ss_pred             HHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCcc
Confidence            3444443  3457999999999999999999999999999999 5567666542      5799999999987644 3 9


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus       179 ~Iv~  182 (276)
T 2b3t_A          179 MIVS  182 (276)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.14  E-value=2.1e-06  Score=68.18  Aligned_cols=72  Identities=17%  Similarity=0.221  Sum_probs=56.0

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------C-CCceEEeccCCCCCCC---C
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------C-PGVEHVGGDMFVEVPK---G  260 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~-~ri~~~~gD~f~~~P~---~  260 (266)
                      +++.++ .....+|+|||||+|.++..+++.+|..+++++|+. ..++.++.      . +++ ++.+|..+.+|.   .
T Consensus        17 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~   94 (178)
T 3hm2_A           17 AISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDN   94 (178)
T ss_dssp             HHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSC
T ss_pred             HHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCC
Confidence            344444 556689999999999999999999999999999994 46666553      1 378 888998875553   3


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++++
T Consensus        95 ~D~i~~  100 (178)
T 3hm2_A           95 PDVIFI  100 (178)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence             99875

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.14  E-value=1.9e-06  Score=71.38  Aligned_cols=65  Identities=17%  Similarity=0.276  Sum_probs=52.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCC-C--CCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-E--VPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~--~P~~--D~~~l  265 (266)
                      ...+|||||||+|.++..+++.+|+.+++++|+. ..++.++.      .++|+++.+|..+ +  +|.+  |.+++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence            4578999999999999999999999999999994 46665543      2679999999876 3  5553  77653

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.13  E-value=4.9e-06  Score=69.40  Aligned_cols=74  Identities=16%  Similarity=0.204  Sum_probs=55.9

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---CCceEEeccCCC-CCCCC--CE
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC---PGVEHVGGDMFV-EVPKG--QA  262 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---~ri~~~~gD~f~-~~P~~--D~  262 (266)
                      +.+...++ .....+|+|||||+|.++..++++.+ .+++++|+ |..++.++..   .+++++.+|+.+ ++|.+  |+
T Consensus        33 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~  110 (243)
T 3bkw_A           33 PALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL  110 (243)
T ss_dssp             HHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred             HHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence            34555555 44568999999999999999998843 38999999 4577666542   479999999988 56543  98


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      ++.
T Consensus       111 v~~  113 (243)
T 3bkw_A          111 AYS  113 (243)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.12  E-value=6.6e-07  Score=73.11  Aligned_cols=75  Identities=23%  Similarity=0.215  Sum_probs=49.4

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCCCCC------
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFVEVP------  258 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~~~P------  258 (266)
                      .+++.+.......+|+|||||+|.++..+++.+|+.+++++|+ |..++.++.+     .+++++.+|++++++      
T Consensus        20 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   99 (215)
T 4dzr_A           20 EAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERG   99 (215)
T ss_dssp             HHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhcc
Confidence            3444443125678999999999999999999999999999999 5678777653     168999999988655      


Q ss_pred             CC-CEEEe
Q 046424          259 KG-QAIFM  265 (266)
Q Consensus       259 ~~-D~~~l  265 (266)
                      .. |+++.
T Consensus       100 ~~fD~i~~  107 (215)
T 4dzr_A          100 RPWHAIVS  107 (215)
T ss_dssp             CCBSEEEE
T ss_pred             CcccEEEE
Confidence            33 88875

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.11  E-value=2.2e-06  Score=72.70  Aligned_cols=66  Identities=11%  Similarity=0.041  Sum_probs=54.3

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCCCCCCC---CCEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFVEVPK---GQAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~~~P~---~D~~~l  265 (266)
                      ....+|+|||||+|.+++.+++..|..+++.+|+. ..++.|+.+       +||++..+|.++.++.   .|++++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivi   96 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVI   96 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEE
Confidence            35589999999999999999999999999999995 466665542       6899999999996553   388764

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.10  E-value=4.4e-06  Score=66.96  Aligned_cols=71  Identities=18%  Similarity=0.252  Sum_probs=55.9

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEEeccCCC-CCCC-C-CEEEe
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-PGVEHVGGDMFV-EVPK-G-QAIFM  265 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gD~f~-~~P~-~-D~~~l  265 (266)
                      .++..+  .....+|+|||||.|.++..+++.  ..+++++|. |..++.++.. ++++++.+|+.+ ++|. . |+++.
T Consensus        38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  113 (195)
T 3cgg_A           38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS  113 (195)
T ss_dssp             HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred             HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence            455554  346689999999999999999998  568999999 5577766543 679999999998 6664 3 99875

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.10  E-value=3.3e-06  Score=68.96  Aligned_cols=64  Identities=13%  Similarity=0.078  Sum_probs=52.7

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCCCCCC-C-CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      ..+|+|||||+|.++..+++.+|+.+++++|. |..++.++.      .++|+++.+|+.+..|. . |+++.
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~  138 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVIS  138 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEEC
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEE
Confidence            57999999999999999999999999999998 556666543      14599999999985443 3 98874

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.10  E-value=4.1e-06  Score=76.14  Aligned_cols=75  Identities=16%  Similarity=0.223  Sum_probs=57.9

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC---------------CCCceEEeccC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS---------------CPGVEHVGGDM  253 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~---------------~~ri~~~~gD~  253 (266)
                      ..+++.+. .....+|+|||||+|..+..++..++.-+++++|+.+ .++.|+.               .++|+++.||+
T Consensus       163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~  241 (438)
T 3uwp_A          163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  241 (438)
T ss_dssp             HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence            34556555 6677899999999999999999998877799999963 4444331               26899999999


Q ss_pred             CC-CCC----CCCEEEe
Q 046424          254 FV-EVP----KGQAIFM  265 (266)
Q Consensus       254 f~-~~P----~~D~~~l  265 (266)
                      ++ +++    ..|++++
T Consensus       242 ~~lp~~d~~~~aDVVf~  258 (438)
T 3uwp_A          242 LSEEWRERIANTSVIFV  258 (438)
T ss_dssp             TSHHHHHHHHTCSEEEE
T ss_pred             cCCccccccCCccEEEE
Confidence            98 553    3598875

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.09  E-value=1.1e-05  Score=65.46  Aligned_cols=62  Identities=16%  Similarity=0.185  Sum_probs=49.5

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCC--CCeEEEeechHHHhhCCCCCCceEEeccCCCC
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP--QLRGINFDLPHVLKHAPSCPGVEHVGGDMFVE  256 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P--~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~~  256 (266)
                      .+.+.+..+....+|+|||||+|.++..+++++|  +.+++++|+.+.    ...++++++.+|+.+.
T Consensus        12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~   75 (201)
T 2plw_A           12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKD   75 (201)
T ss_dssp             HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTT
T ss_pred             HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccch
Confidence            4455554235668999999999999999999998  789999999763    1236899999999873

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.09  E-value=6.4e-06  Score=69.41  Aligned_cols=66  Identities=14%  Similarity=0.302  Sum_probs=51.9

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCC------------CCCCceEEeccCCCC----CCCC--
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAP------------SCPGVEHVGGDMFVE----VPKG--  260 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~------------~~~ri~~~~gD~f~~----~P~~--  260 (266)
                      .+..+|||||||+|.++..+++.+|+.+++++|+. .+++.++            ..++|+++.+|+.+.    +|.+  
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            35679999999999999999999999999999994 4555332            236899999999863    4554  


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |.+++
T Consensus       125 D~v~~  129 (235)
T 3ckk_A          125 TKMFF  129 (235)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            77754

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.07  E-value=6.1e-06  Score=69.21  Aligned_cols=73  Identities=15%  Similarity=0.206  Sum_probs=57.7

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-CCCCC-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-EVPKG-  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~P~~-  260 (266)
                      ..+++.++ .....+|||||||+|.++..+++..+  +++++|+ |..++.++.      .++++++.+|+.+ +++.+ 
T Consensus        11 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~   87 (239)
T 1xxl_A           11 GLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS   87 (239)
T ss_dssp             HHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred             chHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence            34566666 66789999999999999999999986  7899998 556666553      2679999999977 66643 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |+++.
T Consensus        88 fD~v~~   93 (239)
T 1xxl_A           88 FDIITC   93 (239)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence             98874

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.06  E-value=3.2e-06  Score=67.15  Aligned_cols=72  Identities=14%  Similarity=0.095  Sum_probs=56.4

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCC-C-C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPK-G-Q  261 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~-~-D  261 (266)
                      .+++.++ .....+|+|||||+|.++..+++  +..+++++|. |..++.++.+      ++++++.+|+.+++|. . |
T Consensus        26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  102 (183)
T 2yxd_A           26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN  102 (183)
T ss_dssp             HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence            3444444 55668999999999999999998  8889999998 4566665542      6899999999886664 3 9


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      ++++
T Consensus       103 ~i~~  106 (183)
T 2yxd_A          103 KAFI  106 (183)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.05  E-value=7.5e-06  Score=76.22  Aligned_cols=74  Identities=15%  Similarity=0.079  Sum_probs=58.9

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEEeccCCC-CCCCC-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-------PGVEHVGGDMFV-EVPKG-  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~~gD~f~-~~P~~-  260 (266)
                      ..+++.++ .....+|+|||||+|.++..+++ .|..+++++|+.++++.++..       ++|+++.+|+++ ++|.. 
T Consensus       148 ~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~f  225 (480)
T 3b3j_A          148 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV  225 (480)
T ss_dssp             HHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred             HHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCCe
Confidence            45566555 44568999999999999998877 688899999998866655431       689999999998 77766 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |+|+.
T Consensus       226 D~Ivs  230 (480)
T 3b3j_A          226 DIIIS  230 (480)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99874

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.04  E-value=2.3e-06  Score=71.75  Aligned_cols=66  Identities=12%  Similarity=0.249  Sum_probs=54.9

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCC----CC-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVP----KG-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P----~~-D~~~l  265 (266)
                      .+..+|||||||+|..+..+++.+|+.+++.+|+ |..++.++.+       ++|+++.+|+.+..|    .. |++++
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            3568999999999999999999999999999999 5677766542       589999999988544    33 98875

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.04  E-value=5.2e-06  Score=72.00  Aligned_cols=73  Identities=16%  Similarity=0.164  Sum_probs=56.2

Q ss_pred             HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---------CCceEEeccCCC-CC
Q 046424          189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC---------PGVEHVGGDMFV-EV  257 (266)
Q Consensus       189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---------~ri~~~~gD~f~-~~  257 (266)
                      ...+++.++ . ...+|||||||+|.++..++++  ..+++++|+ |..++.++..         .+|+++.+|+.+ +.
T Consensus        72 ~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  147 (299)
T 3g2m_A           72 AREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL  147 (299)
T ss_dssp             HHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred             HHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence            445566654 3 3359999999999999999998  568999999 5677766542         579999999998 56


Q ss_pred             CCC-CEEEe
Q 046424          258 PKG-QAIFM  265 (266)
Q Consensus       258 P~~-D~~~l  265 (266)
                      +.. |++++
T Consensus       148 ~~~fD~v~~  156 (299)
T 3g2m_A          148 DKRFGTVVI  156 (299)
T ss_dssp             SCCEEEEEE
T ss_pred             CCCcCEEEE
Confidence            555 97764

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.04  E-value=2.3e-06  Score=71.37  Aligned_cols=65  Identities=11%  Similarity=0.205  Sum_probs=51.5

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCCC----CCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFVE----VPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~~----~P~~--D~~~l  265 (266)
                      ...+|||||||+|.++..+++.+|+.+++++|+. ..++.++.      .++|+++.+|..+-    +|.+  |.+++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~  111 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL  111 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence            4689999999999999999999999999999994 45655432      25799999997652    5554  76654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.03  E-value=6e-06  Score=70.92  Aligned_cols=74  Identities=16%  Similarity=0.140  Sum_probs=60.1

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCC-C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPK-G  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~-~  260 (266)
                      .++..++ .....+|||+|||+|.++..++++ .|..+++.+|+ |..++.++.+       ++++++.+|+.+.+|. .
T Consensus       103 ~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  181 (277)
T 1o54_A          103 FIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKD  181 (277)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCS
T ss_pred             HHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCc
Confidence            4556555 666789999999999999999999 78999999998 6677666542       5799999999987665 3


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++++
T Consensus       182 ~D~V~~  187 (277)
T 1o54_A          182 VDALFL  187 (277)
T ss_dssp             EEEEEE
T ss_pred             cCEEEE
Confidence             99875

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.03  E-value=2.7e-06  Score=71.56  Aligned_cols=74  Identities=18%  Similarity=0.277  Sum_probs=57.1

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCC-CCCCC--C
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFV-EVPKG--Q  261 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~-~~P~~--D  261 (266)
                      ..+++.++ .....+|||||||+|.++..++++. ..+++++|. |..++.++.    .++++++.+|+.+ ++|.+  |
T Consensus        83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD  160 (254)
T 1xtp_A           83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD  160 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred             HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence            34555554 4567899999999999999999987 557999998 567766553    2679999999987 66654  9


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus       161 ~v~~  164 (254)
T 1xtp_A          161 LIVI  164 (254)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.03  E-value=1.3e-05  Score=66.65  Aligned_cols=63  Identities=25%  Similarity=0.401  Sum_probs=52.9

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEEeccCCC-CCCCC-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-PGVEHVGGDMFV-EVPKG-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gD~f~-~~P~~-D~~~  264 (266)
                      ....+|+|||||+|.++..++++++  +++++|+ |..++.++.. ++++++.+|+.+ +.+.. |+++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~  105 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVV  105 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEE
Confidence            3568999999999999999999987  7999999 6677776653 689999999998 55555 9887

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.03  E-value=4.8e-06  Score=68.32  Aligned_cols=70  Identities=13%  Similarity=0.180  Sum_probs=53.3

Q ss_pred             HHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------------------CCCceEEeccC
Q 046424          193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------------------CPGVEHVGGDM  253 (266)
Q Consensus       193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------------------~~ri~~~~gD~  253 (266)
                      ++.+. .....+|+|||||+|..+..++++  ..+++++|+. ..++.++.                  .++|+++.+|+
T Consensus        15 ~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~   91 (203)
T 1pjz_A           15 WSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   91 (203)
T ss_dssp             HHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc
Confidence            34443 456689999999999999999998  5689999995 46665542                  25899999999


Q ss_pred             CC-CCC--CC-CEEEe
Q 046424          254 FV-EVP--KG-QAIFM  265 (266)
Q Consensus       254 f~-~~P--~~-D~~~l  265 (266)
                      ++ +.+  .. |+++.
T Consensus        92 ~~l~~~~~~~fD~v~~  107 (203)
T 1pjz_A           92 FALTARDIGHCAAFYD  107 (203)
T ss_dssp             SSSTHHHHHSEEEEEE
T ss_pred             ccCCcccCCCEEEEEE
Confidence            98 544  24 88873

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.03  E-value=1.2e-05  Score=64.11  Aligned_cols=59  Identities=14%  Similarity=0.262  Sum_probs=49.8

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCCCCCceEEeccCCCCCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPSCPGVEHVGGDMFVEVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~~~ri~~~~gD~f~~~P~~--D~~~l  265 (266)
                      ...+|+|||||+|.++..++++.   +++++|+.+ .++.   .++++++.+|++++++.+  |+++.
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~   84 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVF   84 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEE
T ss_pred             CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEE
Confidence            44699999999999999999988   899999954 5655   468999999999977643  99875

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.02  E-value=7.5e-06  Score=71.12  Aligned_cols=72  Identities=18%  Similarity=0.177  Sum_probs=57.1

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCCC-C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPKG-Q  261 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~~-D  261 (266)
                      .+++.++ .....+|||||||+|.++..+++++| .+++++|+ |..++.++..       ++|+++.+|+.+- +.. |
T Consensus        63 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~fD  139 (302)
T 3hem_A           63 LALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPVD  139 (302)
T ss_dssp             HHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCCS
T ss_pred             HHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCcc
Confidence            4556555 56678999999999999999999988 89999999 5677666532       4899999999754 554 8


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus       140 ~v~~  143 (302)
T 3hem_A          140 RIVS  143 (302)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.02  E-value=4.7e-06  Score=72.27  Aligned_cols=64  Identities=17%  Similarity=0.159  Sum_probs=52.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCC-CC---CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVP-KG---QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P-~~---D~~~l  265 (266)
                      ...+|+|||||+|..+..+++. |+.+++++|+ |..++.++.+       .||+++.+|++++.+ .-   |+++.
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~Ivs  198 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILS  198 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEE
Confidence            4468999999999999999999 9999999999 6677776542       479999999998554 34   88764

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.02  E-value=8.8e-06  Score=69.79  Aligned_cols=72  Identities=18%  Similarity=0.231  Sum_probs=57.2

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEEeccCCC-CCCCC-CEEEe
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-PGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      .+++.++ .....+|||||||+|.++..+++  |..+++++|+ |..++.++.. ++++++.+|+.+ +++.. |+++.
T Consensus        48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~  123 (279)
T 3ccf_A           48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS  123 (279)
T ss_dssp             HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred             HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence            4455555 55678999999999999999998  8889999999 5567766543 789999999988 55545 98875

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.02  E-value=6.7e-06  Score=67.65  Aligned_cols=72  Identities=17%  Similarity=0.193  Sum_probs=55.6

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC--CCceEEeccCCC-CCCCC-CEEEe
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC--PGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~--~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      .+++.+. .....+|||||||+|.++..++++  ..+++++|+ |..++.++..  ++++++.+|+.+ +.+.. |+++.
T Consensus        36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  112 (220)
T 3hnr_A           36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS  112 (220)
T ss_dssp             HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred             HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence            3444443 345689999999999999999998  668999999 5567666542  489999999998 66644 99875

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.02  E-value=1.7e-06  Score=75.48  Aligned_cols=67  Identities=16%  Similarity=0.208  Sum_probs=55.3

Q ss_pred             CCCCceEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIV-SKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~-~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      .....+|+|||||+|.++..++ ..+|+.+++++|+ |..++.++.+       ++|+++.+|+.+ +++.. |+++.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~  193 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTS  193 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEEC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEE
Confidence            4567899999999999999996 7899999999999 6677766531       469999999998 56654 99875

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.00  E-value=1.5e-05  Score=67.18  Aligned_cols=65  Identities=15%  Similarity=0.200  Sum_probs=51.7

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCceEEeccCCC-CCCCC--CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-----CPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      .....+|+|||||+|.++..+++.  ..+++++|+ |..++.++.     .++++++.+|+.+ ++|.+  |+++.
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  110 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIV  110 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEE
Confidence            456789999999999999999987  568999999 446665432     3789999999977 56654  98875

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.99  E-value=3.6e-06  Score=74.13  Aligned_cols=63  Identities=17%  Similarity=0.270  Sum_probs=53.2

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC---CCCC-C-CEEEe
Q 046424          203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV---EVPK-G-QAIFM  265 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~---~~P~-~-D~~~l  265 (266)
                      .+|||||||.|..+..+++.+|+.+++++|+ |.+++.+++      .+|++++.+|.++   ..+. . |+|+.
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~  165 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIR  165 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEE
Confidence            4999999999999999999999999999999 568887654      2699999999876   3443 4 98875

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.99  E-value=6.1e-06  Score=69.81  Aligned_cols=65  Identities=8%  Similarity=-0.038  Sum_probs=52.1

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccC----CCCCC----CC-CEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDM----FVEVP----KG-QAI  263 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~----f~~~P----~~-D~~  263 (266)
                      ...+|+|||||+|.++..+++++|+.+++++|+ |..++.++.+       ++|+++.+|.    +++++    .. |++
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            457999999999999999999999999999999 5677766532       4799999984    44555    23 888


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      +.
T Consensus       145 ~~  146 (254)
T 2h00_A          145 MC  146 (254)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=97.98  E-value=1.4e-05  Score=63.92  Aligned_cols=73  Identities=16%  Similarity=0.215  Sum_probs=56.8

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------C--CceEEeccCCCCCCC-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------P--GVEHVGGDMFVEVPK-  259 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~--ri~~~~gD~f~~~P~-  259 (266)
                      +.+++.+. .....+|+|||||+|.++..+++.  ..+++++|+ |..++.++.+      +  |++++.+|+.+..+. 
T Consensus        42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  118 (194)
T 1dus_A           42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR  118 (194)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred             HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence            34556555 556789999999999999999998  778999998 5566665431      3  599999999996665 


Q ss_pred             C-CEEEe
Q 046424          260 G-QAIFM  265 (266)
Q Consensus       260 ~-D~~~l  265 (266)
                      . |+++.
T Consensus       119 ~~D~v~~  125 (194)
T 1dus_A          119 KYNKIIT  125 (194)
T ss_dssp             CEEEEEE
T ss_pred             CceEEEE
Confidence            3 98875

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.98  E-value=1.3e-05  Score=71.29  Aligned_cols=73  Identities=15%  Similarity=0.111  Sum_probs=56.3

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC-------CCceEEeccCCC-CCCC-C-
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC-------PGVEHVGGDMFV-EVPK-G-  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~-------~ri~~~~gD~f~-~~P~-~-  260 (266)
                      .+.+... .....+|+|||||+|.++..++++ +..+++++|..+.++.++..       ++|+++.+|+.+ ++|. . 
T Consensus        55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  132 (340)
T 2fyt_A           55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV  132 (340)
T ss_dssp             HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred             HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence            3444333 445689999999999999999887 55689999998777665531       689999999998 6774 4 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |+++.
T Consensus       133 D~Ivs  137 (340)
T 2fyt_A          133 DVIIS  137 (340)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99874

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=97.98  E-value=1.2e-05  Score=67.28  Aligned_cols=63  Identities=19%  Similarity=0.415  Sum_probs=51.0

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCC---CCCCC--CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFV---EVPKG--QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~---~~P~~--D~~~l  265 (266)
                      ++...+|||||||+|.++..+++.  +.+++++|+ |..++.++.  +++++.+|+.+   ++|.+  |+++.
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~--~~~~~~~d~~~~~~~~~~~~fD~i~~  107 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEG--KFNVVKSDAIEYLKSLPDKYLDGVMI  107 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHT--TSEEECSCHHHHHHTSCTTCBSEEEE
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHh--hcceeeccHHHHhhhcCCCCeeEEEE
Confidence            446689999999999999999998  457899999 567777765  39999999877   56654  99875

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=97.98  E-value=9.3e-06  Score=73.26  Aligned_cols=65  Identities=17%  Similarity=0.196  Sum_probs=54.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC--------------CCceEEeccCCC-------CC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPSC--------------PGVEHVGGDMFV-------EV  257 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~--------------~ri~~~~gD~f~-------~~  257 (266)
                      ...+|||||||+|.++..+++.+ |+.+++++|+ |..++.++.+              ++|+++.+|+.+       ++
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            45799999999999999999997 8999999999 5677766542              689999999987       56


Q ss_pred             CCC--CEEEe
Q 046424          258 PKG--QAIFM  265 (266)
Q Consensus       258 P~~--D~~~l  265 (266)
                      |.+  |+|+.
T Consensus       163 ~~~~fD~V~~  172 (383)
T 4fsd_A          163 PDSSVDIVIS  172 (383)
T ss_dssp             CTTCEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            654  98874

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=97.97  E-value=1.2e-05  Score=64.72  Aligned_cols=72  Identities=15%  Similarity=0.126  Sum_probs=55.7

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC-CCCCC-C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV-EVPKG-Q  261 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~-~~P~~-D  261 (266)
                      .+++.++ .....+|+|||||+|.++..+++.  ..+++++|+ |..++.++..      ++++++.+|+.+ +.+.. |
T Consensus        23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D   99 (199)
T 2xvm_A           23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD   99 (199)
T ss_dssp             HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred             HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence            4555555 445679999999999999999988  668999999 5677766542      479999999987 45444 9


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus       100 ~v~~  103 (199)
T 2xvm_A          100 FILS  103 (199)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.97  E-value=1.5e-05  Score=65.51  Aligned_cols=71  Identities=17%  Similarity=0.182  Sum_probs=55.0

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------C-CceEEeccCCCCCC---CC
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------P-GVEHVGGDMFVEVP---KG  260 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~-ri~~~~gD~f~~~P---~~  260 (266)
                      ++..++ .....+|+|||||+|.++..+++.  ..+++++|+ |..++.++.+      + +|+++.+|+.+.++   ..
T Consensus        47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~  123 (204)
T 3njr_A           47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP  123 (204)
T ss_dssp             HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred             HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence            344444 556689999999999999999998  789999999 5677666532      4 89999999988332   33


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |++++
T Consensus       124 D~v~~  128 (204)
T 3njr_A          124 EAVFI  128 (204)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            98875

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.97  E-value=6.8e-06  Score=69.60  Aligned_cols=66  Identities=12%  Similarity=0.164  Sum_probs=53.7

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC---CCCC--C-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV---EVPK--G-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~---~~P~--~-D~~~  264 (266)
                      .+..+|||||||+|..+..+++.+| +.+++.+|+ |..++.++.+       ++|+++.+|..+   .++.  . |+++
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~  141 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF  141 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence            3568999999999999999999999 899999999 6677666542       589999999876   2332  4 9987


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       142 ~  142 (248)
T 3tfw_A          142 I  142 (248)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=97.97  E-value=2.6e-05  Score=64.96  Aligned_cols=64  Identities=16%  Similarity=0.314  Sum_probs=52.8

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC---CCceEEeccCCC-CCCCC--CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC---PGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~---~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ....+|||||||+|.++..+++.  ..+++++|+ |..++.++..   .+++++.+|+.+ ++|.+  |+++.
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  122 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMA  122 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEE
Confidence            35689999999999999999998  568999999 5577766553   789999999998 66654  98875

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=97.96  E-value=8.7e-06  Score=67.87  Aligned_cols=62  Identities=23%  Similarity=0.254  Sum_probs=50.8

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      ...+|||||||+|.++..+++.   .+++++|+ |..++.++..     .+++++.+|+.+ +.+.. |++++
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  102 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITI  102 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEE
Confidence            4589999999999999999887   78999999 5677766542     579999999988 56655 98875

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.96  E-value=1.7e-05  Score=66.90  Aligned_cols=57  Identities=11%  Similarity=0.240  Sum_probs=47.2

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCC--------------CCCCceEEeccCCCC
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAP--------------SCPGVEHVGGDMFVE  256 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~--------------~~~ri~~~~gD~f~~  256 (266)
                      +...+|||||||+|.++..+++.+|+.+++++|+. .+++.++              ..++|+++.+|.++.
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~  119 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF  119 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHH
Confidence            35689999999999999999999999999999974 4655442              225799999999873

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=97.96  E-value=8.4e-06  Score=69.50  Aligned_cols=74  Identities=9%  Similarity=0.119  Sum_probs=56.5

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechH-------HHhhCCCC-------CCceEEecc-CC
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPH-------VLKHAPSC-------PGVEHVGGD-MF  254 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-------vi~~a~~~-------~ri~~~~gD-~f  254 (266)
                      .+++.++ .....+|+|||||+|.++..+++++ |+.+++++|+.+       .++.++.+       ++|+++.+| ++
T Consensus        34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  112 (275)
T 3bkx_A           34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS  112 (275)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence            4556555 6667899999999999999999996 889999999964       56555431       589999998 65


Q ss_pred             C---CCCC-C-CEEEe
Q 046424          255 V---EVPK-G-QAIFM  265 (266)
Q Consensus       255 ~---~~P~-~-D~~~l  265 (266)
                      .   ++|. . |+++.
T Consensus       113 ~~~~~~~~~~fD~v~~  128 (275)
T 3bkx_A          113 DDLGPIADQHFDRVVL  128 (275)
T ss_dssp             TCCGGGTTCCCSEEEE
T ss_pred             hccCCCCCCCEEEEEE
Confidence            4   2344 3 98875

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.96  E-value=1.5e-05  Score=65.03  Aligned_cols=65  Identities=12%  Similarity=0.060  Sum_probs=52.0

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCCC-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPKG-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~~-D~~~l  265 (266)
                      ....+|||||||+|.++..+++ +|..+++++|+ |..++.++.+      +.++++.+|+++..+.. |+++.
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~  131 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVA  131 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEE
Confidence            3568999999999999999776 67789999999 5677766542      34999999999866655 98875

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.95  E-value=9.5e-06  Score=72.09  Aligned_cols=75  Identities=17%  Similarity=0.215  Sum_probs=58.3

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEEeccCCCCCCCC-CE
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----PGVEHVGGDMFVEVPKG-QA  262 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gD~f~~~P~~-D~  262 (266)
                      +.+++.++ .....+|+|||||+|.++..+++.+|+.+++++|+. ..++.++.+     ..++++.+|+++..+.. |+
T Consensus       186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~  264 (343)
T 2pjd_A          186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM  264 (343)
T ss_dssp             HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred             HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence            44566664 334568999999999999999999999999999995 467666542     34788999999855555 99


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      ++.
T Consensus       265 Iv~  267 (343)
T 2pjd_A          265 IIS  267 (343)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.93  E-value=1.1e-05  Score=71.78  Aligned_cols=74  Identities=15%  Similarity=0.087  Sum_probs=56.9

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC------C-CCceEEeccCCC-CCCCC-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS------C-PGVEHVGGDMFV-EVPKG-  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~------~-~ri~~~~gD~f~-~~P~~-  260 (266)
                      ..+++.+. .....+|+|||||+|.++..++++ +..+++++|+.+.++.++.      . ++|+++.+|+.+ +.|.. 
T Consensus        40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~  117 (348)
T 2y1w_A           40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV  117 (348)
T ss_dssp             HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred             HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence            34555554 445689999999999999998885 6678999999876655543      1 689999999998 66765 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |+++.
T Consensus       118 D~Ivs  122 (348)
T 2y1w_A          118 DIIIS  122 (348)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            98874

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.93  E-value=1.6e-05  Score=66.81  Aligned_cols=72  Identities=21%  Similarity=0.317  Sum_probs=54.7

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC-CE
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG-QA  262 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~-D~  262 (266)
                      .+++... .....+|+|||||+|.++..+++.  ..+++++|+ |..++.++..     .+++++.+|+.+ +.+.. |+
T Consensus        32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~  108 (252)
T 1wzn_A           32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA  108 (252)
T ss_dssp             HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred             HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence            3344433 345689999999999999999987  568999999 5677666532     479999999998 55655 98


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      +++
T Consensus       109 v~~  111 (252)
T 1wzn_A          109 VTM  111 (252)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.93  E-value=1.4e-05  Score=68.75  Aligned_cols=72  Identities=18%  Similarity=0.165  Sum_probs=54.9

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCCCCCC-C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVEVPKG-Q  261 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~P~~-D  261 (266)
                      .+++.++ .....+|||||||.|.++..++++++. +++++|+ |..++.++.       .++|+++.+|+. ++|.. |
T Consensus        55 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~fD  131 (287)
T 1kpg_A           55 LALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-QFDEPVD  131 (287)
T ss_dssp             HHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-GCCCCCS
T ss_pred             HHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh-hCCCCee
Confidence            4455554 556789999999999999999987754 9999999 556665543       258999999995 45544 9


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus       132 ~v~~  135 (287)
T 1kpg_A          132 RIVS  135 (287)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.92  E-value=1.5e-05  Score=68.11  Aligned_cols=67  Identities=13%  Similarity=0.270  Sum_probs=53.5

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------C---CCceEEeccCCCC--------CCC
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------C---PGVEHVGGDMFVE--------VPK  259 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~---~ri~~~~gD~f~~--------~P~  259 (266)
                      .....+|||||||+|.++..+++++|+.+++++|+ |..++.++.       +   +||+++.+|+.+.        ++.
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            44567999999999999999999999999999999 455555432       2   3799999999875        343


Q ss_pred             -C-CEEEe
Q 046424          260 -G-QAIFM  265 (266)
Q Consensus       260 -~-D~~~l  265 (266)
                       . |+++.
T Consensus       114 ~~fD~Vv~  121 (260)
T 2ozv_A          114 EHFHHVIM  121 (260)
T ss_dssp             TCEEEEEE
T ss_pred             CCcCEEEE
Confidence             3 98875

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.91  E-value=1e-05  Score=70.59  Aligned_cols=66  Identities=18%  Similarity=0.254  Sum_probs=54.3

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCC-C-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      .....+|+|||||+|.++..++.+.|+.+++++|+ |+.++.|+.+      ++|+++.+|..+ +|. . |++++
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~  194 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMV  194 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEE
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEE
Confidence            56789999999999988877778889999999999 5678777642      789999999987 333 3 99875

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.91  E-value=3.8e-05  Score=63.98  Aligned_cols=66  Identities=6%  Similarity=0.135  Sum_probs=52.0

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhh----CCCCCCceEEeccCCC-----CCCCC-CEEE
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKH----APSCPGVEHVGGDMFV-----EVPKG-QAIF  264 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~----a~~~~ri~~~~gD~f~-----~~P~~-D~~~  264 (266)
                      +....+|+|||||+|.++..+++.+|+.+++++|.. ..++.    ++..++++++.+|+.+     +++.. |+++
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~  148 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE
Confidence            456689999999999999999999998899999995 35543    4444789999999986     23333 8876

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=97.91  E-value=1.8e-05  Score=64.46  Aligned_cols=65  Identities=11%  Similarity=0.082  Sum_probs=52.7

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCC-CCCCC--CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ....+|+|||||+|.++..+++..+. +++++|+ |..++.++.    .++++++.+|+.+ +++.+  |+++.
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~  113 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLE  113 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEE
Confidence            45689999999999999999999776 8999999 456665543    2689999999988 66653  99874

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.90  E-value=1.5e-05  Score=68.26  Aligned_cols=74  Identities=18%  Similarity=0.185  Sum_probs=58.1

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC---------CCCceEEeccCCC-CCC
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPS---------CPGVEHVGGDMFV-EVP  258 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~---------~~ri~~~~gD~f~-~~P  258 (266)
                      .++..++ .....+|+|||||+|.++..+++. .|..+++.+|+ |..++.++.         .++++++.+|+.+ +++
T Consensus        90 ~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~  168 (280)
T 1i9g_A           90 QIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP  168 (280)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred             HHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC
Confidence            4556565 666789999999999999999996 68899999999 666665543         2579999999988 455


Q ss_pred             C-C-CEEEe
Q 046424          259 K-G-QAIFM  265 (266)
Q Consensus       259 ~-~-D~~~l  265 (266)
                      . . |++++
T Consensus       169 ~~~~D~v~~  177 (280)
T 1i9g_A          169 DGSVDRAVL  177 (280)
T ss_dssp             TTCEEEEEE
T ss_pred             CCceeEEEE
Confidence            4 3 98875

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.90  E-value=1.1e-05  Score=71.84  Aligned_cols=64  Identities=17%  Similarity=0.120  Sum_probs=53.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEeccCCC-CCCC-C-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGDMFV-EVPK-G-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~P~-~-D~~~l  265 (266)
                      ...+|||||||+|.++..++++ +..+++++|+.+.++.++.       .++|+++.+|+.+ ++|. . |+++.
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis  139 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIIS  139 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred             CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEE
Confidence            4589999999999999999988 7779999999877766553       1579999999999 7874 3 99874

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=97.90  E-value=9.9e-06  Score=69.63  Aligned_cols=71  Identities=14%  Similarity=0.173  Sum_probs=54.5

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-C-CCCC
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-E-VPKG  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~-~P~~  260 (266)
                      .+++.++ . +..+|||||||+|.++..+++.  ..+++++|+ |..++.++..       ++|+++.+|+.+ + ++.+
T Consensus        60 ~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  135 (285)
T 4htf_A           60 RVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET  135 (285)
T ss_dssp             HHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred             HHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence            3455544 2 3579999999999999999998  678999999 5677766542       689999999988 3 4443


Q ss_pred             --CEEEe
Q 046424          261 --QAIFM  265 (266)
Q Consensus       261 --D~~~l  265 (266)
                        |+++.
T Consensus       136 ~fD~v~~  142 (285)
T 4htf_A          136 PVDLILF  142 (285)
T ss_dssp             CEEEEEE
T ss_pred             CceEEEE
Confidence              98875

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.88  E-value=7.2e-06  Score=66.67  Aligned_cols=62  Identities=15%  Similarity=0.147  Sum_probs=51.5

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEEeccCCC-CCCCC--CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-CPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ..+|||||||+|.++..++++  ..+++++|+ |..++.++. .++++++.+|+.+ ++|.+  |++++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  108 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLA  108 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEe
Confidence            579999999999999999998  558999999 557776665 3789999999988 66644  98875

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.88  E-value=1.5e-05  Score=66.73  Aligned_cols=74  Identities=20%  Similarity=0.224  Sum_probs=57.8

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCC-C-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPK-G-  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~-~-  260 (266)
                      ..+++.++ .....+|+|||||+|.++..+++..| .+++++|+ |..++.++.+      ++++++.+|+..++|. + 
T Consensus        81 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  158 (235)
T 1jg1_A           81 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP  158 (235)
T ss_dssp             HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCC
Confidence            34555555 66678999999999999999999998 89999996 5677666542      4699999998666664 2 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |+++.
T Consensus       159 fD~Ii~  164 (235)
T 1jg1_A          159 YDVIIV  164 (235)
T ss_dssp             EEEEEE
T ss_pred             ccEEEE
Confidence             88875

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.88  E-value=1.9e-05  Score=69.04  Aligned_cols=72  Identities=13%  Similarity=0.153  Sum_probs=55.4

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCCC-C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPKG-Q  261 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~~-D  261 (266)
                      .+++.++ .....+|||||||.|.++..+++++ +.+++++|+ |..++.++..       ++|+++.+|+.+ +|.. |
T Consensus        81 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~fD  157 (318)
T 2fk8_A           81 LNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPVD  157 (318)
T ss_dssp             HHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCCS
T ss_pred             HHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCCcC
Confidence            4455555 5567899999999999999999987 569999999 5566665431       579999999864 4554 9


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus       158 ~v~~  161 (318)
T 2fk8_A          158 RIVS  161 (318)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.87  E-value=1.4e-05  Score=71.22  Aligned_cols=75  Identities=16%  Similarity=0.055  Sum_probs=59.7

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC-CCCC-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV-EVPK-  259 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~-~~P~-  259 (266)
                      ..++.... |....+|+|+|||+|.+++.++... |+.+++++|+ |.+++.++.+      ++|+++.+|+.+ +.|. 
T Consensus       193 ~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~  271 (354)
T 3tma_A          193 QALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFP  271 (354)
T ss_dssp             HHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCC
T ss_pred             HHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccC
Confidence            34455555 7777899999999999999999998 9999999999 5577766542      489999999998 4433 


Q ss_pred             C-CEEEe
Q 046424          260 G-QAIFM  265 (266)
Q Consensus       260 ~-D~~~l  265 (266)
                      . |+++.
T Consensus       272 ~~D~Ii~  278 (354)
T 3tma_A          272 EVDRILA  278 (354)
T ss_dssp             CCSEEEE
T ss_pred             CCCEEEE
Confidence            3 88875

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.85  E-value=9.9e-06  Score=67.62  Aligned_cols=67  Identities=12%  Similarity=0.111  Sum_probs=53.2

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechH-----HHhhCCCCCCceEEeccCCCC--CC---CC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPH-----VLKHAPSCPGVEHVGGDMFVE--VP---KG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-----vi~~a~~~~ri~~~~gD~f~~--~P---~~-D~~~l  265 (266)
                      +....+|+|||||+|.++..+++.+ |+.+++++|+.+     .++.++.+++++++.+|+.+.  +|   .. |++++
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~  153 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFA  153 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEE
Confidence            4556899999999999999999997 788999999953     345554457899999999983  22   23 88875

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=97.85  E-value=1.8e-05  Score=64.76  Aligned_cols=65  Identities=11%  Similarity=0.121  Sum_probs=51.3

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCC-CCCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      +....+|||||||+|.++..++++  ..+++++|+ |..++.++..-+++++.+|+.+ +.+.. |+++.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~  108 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWA  108 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEe
Confidence            445689999999999999999988  568999999 5677776654478889999887 52233 98875

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=97.85  E-value=1.5e-05  Score=66.46  Aligned_cols=63  Identities=10%  Similarity=0.107  Sum_probs=50.1

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--CCceEEeccCCCCCCC-C-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      ...+|||||||+|.++..++++.+  +++++|+. ..++.++..  .+++++.+|+.+..|. . |++++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~  109 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVL  109 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEE
Confidence            457899999999999999999988  68889984 566665542  2899999999875444 3 98875

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.85  E-value=9.7e-06  Score=64.48  Aligned_cols=65  Identities=9%  Similarity=0.036  Sum_probs=51.4

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCC---CCCC-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVE---VPKG-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~---~P~~-D~~~l  265 (266)
                      ....+|+|||||+|.++..++++ +..+++++|+ |..++.++.+       ++++++.+|+.+.   .+.. |++++
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~  106 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFL  106 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEE
Confidence            35689999999999999999987 7779999999 5677766531       4799999999873   2344 88875

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.85  E-value=2.5e-05  Score=64.03  Aligned_cols=74  Identities=12%  Similarity=0.145  Sum_probs=57.1

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCC-C-C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVP-K-G  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P-~-~  260 (266)
                      .+++.+. .....+|+|||||+|.++..+++.. |+.+++++|. |..++.++..      ++++++.+|+..++| . .
T Consensus        68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  146 (215)
T 2yxe_A           68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP  146 (215)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred             HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence            3444444 5566899999999999999999988 7789999998 5566665542      579999999977665 2 3


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |+++.
T Consensus       147 fD~v~~  152 (215)
T 2yxe_A          147 YDRIYT  152 (215)
T ss_dssp             EEEEEE
T ss_pred             eeEEEE
Confidence             88875

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.84  E-value=3.6e-05  Score=60.31  Aligned_cols=71  Identities=25%  Similarity=0.246  Sum_probs=54.7

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhhCCCCCCceEEeccCCC-C--------CCC-
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPHVLKHAPSCPGVEHVGGDMFV-E--------VPK-  259 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~-~--------~P~-  259 (266)
                      .+++.+.......+|+|||||+|.++..+++.+ |+.+++++|+.+ ..   ..++++++.+|+.+ +        ++. 
T Consensus        12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD---PIVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC---CCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc---ccCcEEEEEcccccchhhhhhhccCCCC
Confidence            344444423456799999999999999999995 789999999977 22   22789999999998 4        664 


Q ss_pred             C-CEEEe
Q 046424          260 G-QAIFM  265 (266)
Q Consensus       260 ~-D~~~l  265 (266)
                      . |+++.
T Consensus        88 ~~D~i~~   94 (180)
T 1ej0_A           88 KVQVVMS   94 (180)
T ss_dssp             CEEEEEE
T ss_pred             ceeEEEE
Confidence            3 88875

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=97.84  E-value=1.9e-05  Score=65.61  Aligned_cols=64  Identities=17%  Similarity=0.192  Sum_probs=51.8

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEEeccCCCC--CC-C-C-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-CPGVEHVGGDMFVE--VP-K-G-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gD~f~~--~P-~-~-D~~~l  265 (266)
                      ....+|||||||+|.++..+++.  ..+++++|+ |..++.++. .++++++.+|+.+.  ++ . . |+|+.
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~  117 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVS  117 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEe
Confidence            35689999999999999999998  568999999 567776654 37899999999874  44 3 3 88874

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=97.84  E-value=5.5e-06  Score=65.43  Aligned_cols=68  Identities=19%  Similarity=0.149  Sum_probs=53.7

Q ss_pred             HHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEEeccCCCCCCCC--CEEEe
Q 046424          193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-CPGVEHVGGDMFVEVPKG--QAIFM  265 (266)
Q Consensus       193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gD~f~~~P~~--D~~~l  265 (266)
                      ++.++ .....+|||||||+|.++..+++++.  +++++|+ |..++.++. .++|+++.+|  .++|.+  |+++.
T Consensus        10 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~   81 (170)
T 3i9f_A           10 LPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILF   81 (170)
T ss_dssp             HHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEE
T ss_pred             HHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEE
Confidence            44444 55678999999999999999999984  8999998 556776654 4799999999  555553  98875

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.84  E-value=7.7e-06  Score=68.72  Aligned_cols=67  Identities=15%  Similarity=0.157  Sum_probs=53.1

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-CC----CCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-EV----PKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~----P~~-D~~~l  265 (266)
                      +....+|+|||||+|..+..++...|+.+++++|+ |..++.++.      .++|+++.+|+.+ +.    +.. |+++.
T Consensus        68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence            34568999999999999999999999999999999 456666543      2579999999876 43    234 88874

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.83  E-value=4.8e-06  Score=68.92  Aligned_cols=66  Identities=15%  Similarity=0.126  Sum_probs=53.1

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCCCC-------CC-CE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVEVP-------KG-QA  262 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~P-------~~-D~  262 (266)
                      .+..+|||||||+|..+..+++++| +.+++.+|+ |..++.++.       .++|+++.+|..+.+|       .. |+
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~  136 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF  136 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence            3568999999999999999999999 899999998 667766553       1579999999976322       23 88


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      +++
T Consensus       137 v~~  139 (223)
T 3duw_A          137 IFI  139 (223)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=97.83  E-value=3.1e-05  Score=63.94  Aligned_cols=67  Identities=7%  Similarity=0.060  Sum_probs=51.8

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-----HHhhCCCCCCceEEeccCCCC-----CCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-----VLKHAPSCPGVEHVGGDMFVE-----VPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-----vi~~a~~~~ri~~~~gD~f~~-----~P~~-D~~~l  265 (266)
                      .....+|+|||||+|.++..+++..|+.+++.+|+.+     .++.++...+|+++.+|+.++     ++.. |+++.
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  132 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQ  132 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEE
Confidence            4456799999999999999999999877899999964     334444346789999998763     3334 88874

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.82  E-value=1.1e-05  Score=67.18  Aligned_cols=65  Identities=11%  Similarity=0.189  Sum_probs=53.1

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCC-----CCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEV-----PKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~-----P~~-D~~~l  265 (266)
                      ...+|||||||+|..+..+++.+|+.+++++|+ |..++.++.+       ++|+++.+|+.+..     +.. |++++
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            567999999999999999999999999999999 5666666542       57999999998732     234 88875

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.82  E-value=3.1e-05  Score=63.23  Aligned_cols=72  Identities=13%  Similarity=0.139  Sum_probs=55.7

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCCCCCC--C-
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFVEVPK--G-  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~P~--~-  260 (266)
                      .+++.++ .....+|+|||||+|.++..+++.  ..+++.+|+ |..++.++.      .++++++.+|.++..+.  . 
T Consensus        68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  144 (210)
T 3lbf_A           68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF  144 (210)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence            3445555 566789999999999999999999  678999999 556666553      25799999999985442  3 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |+++.
T Consensus       145 D~i~~  149 (210)
T 3lbf_A          145 DAIIV  149 (210)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            88875

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=97.81  E-value=3.3e-05  Score=66.93  Aligned_cols=73  Identities=14%  Similarity=0.273  Sum_probs=56.3

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C---CCceEEeccCCC-CCCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----C---PGVEHVGGDMFV-EVPKG  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~---~ri~~~~gD~f~-~~P~~  260 (266)
                      ..+++.++ .....+|+|||||+|.++..++++..  +++++|+ |..++.++.    .   ++++++.+|+.+ ++|.-
T Consensus        18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~f   94 (285)
T 1zq9_A           18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF   94 (285)
T ss_dssp             HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCC
T ss_pred             HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhh
Confidence            45566665 56678999999999999999999954  7899999 456655443    1   579999999998 67755


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |+++.
T Consensus        95 D~vv~   99 (285)
T 1zq9_A           95 DTCVA   99 (285)
T ss_dssp             SEEEE
T ss_pred             cEEEE
Confidence            87763

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.79  E-value=2.2e-05  Score=69.39  Aligned_cols=64  Identities=16%  Similarity=0.167  Sum_probs=51.8

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEeccCCC-CCCC-C-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGDMFV-EVPK-G-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~P~-~-D~~~l  265 (266)
                      ...+|+|||||+|.++..++++ +..+++++|..+.++.++.       .++|+++.+|+.+ ++|. . |+++.
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs  111 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIIS  111 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred             CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEE
Confidence            4579999999999999988886 5568999999877666543       1689999999998 6773 4 98874

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.79  E-value=1.3e-05  Score=64.88  Aligned_cols=67  Identities=15%  Similarity=0.160  Sum_probs=52.7

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-C-CC-CC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-E-VP-KG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~-~P-~~-D~~~l  265 (266)
                      .....+|+|+|||+|.++..+++++ |..+++++|+ |..++.++.+       ++++++.+|+.+ + .+ .. |++++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            3456899999999999999999986 7889999999 4567666542       589999999866 2 33 34 88874

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.79  E-value=4.6e-05  Score=63.12  Aligned_cols=67  Identities=10%  Similarity=0.062  Sum_probs=51.8

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechH-HH----hhCCCCCCceEEeccCCCC-----CCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPH-VL----KHAPSCPGVEHVGGDMFVE-----VPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi----~~a~~~~ri~~~~gD~f~~-----~P~~-D~~~l  265 (266)
                      .....+|+|+|||+|.++..+++.. |+.+++++|..+ .+    +.++..++++++.+|+.+.     .+.. |++++
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence            4456799999999999999999885 678999999954 33    3344447899999999872     2334 88874

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.79  E-value=1.4e-05  Score=63.77  Aligned_cols=66  Identities=15%  Similarity=0.034  Sum_probs=51.5

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCC------CCC-CEE
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEV------PKG-QAI  263 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~------P~~-D~~  263 (266)
                      .....+|+|+|||+|.++..+++ .+..+++++|+ |..++.++.+       ++++++.+|+.+..      +.. |++
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i  120 (187)
T 2fhp_A           42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV  120 (187)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEE
Confidence            33567999999999999999887 56779999999 5677766542       57999999998732      334 888


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      ++
T Consensus       121 ~~  122 (187)
T 2fhp_A          121 LL  122 (187)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.78  E-value=3.2e-05  Score=61.88  Aligned_cols=65  Identities=14%  Similarity=0.144  Sum_probs=49.9

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC--CCCC-C-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV--EVPK-G-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~--~~P~-~-D~~~l  265 (266)
                      .....+|+|||||+|.++..++++  ..+++.+|+ |..++.++.+      ++|+++.+|+..  +++. . |++++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~   95 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIF   95 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence            345689999999999999999988  788999998 5577766542      689999877654  2333 3 88764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.78  E-value=2.5e-05  Score=66.38  Aligned_cols=66  Identities=12%  Similarity=0.203  Sum_probs=53.2

Q ss_pred             CC-CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCC---CCC-C-CEEE
Q 046424          199 FE-GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVE---VPK-G-QAIF  264 (266)
Q Consensus       199 ~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~---~P~-~-D~~~  264 (266)
                      .. ...+|+|||||+|.++..++++.+. +++++|+ |..++.++.+       +||+++.+|+.+.   ++. . |+++
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence            55 6789999999999999999999887 9999999 4566665542       5899999999882   433 3 9887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      .
T Consensus       125 ~  125 (259)
T 3lpm_A          125 C  125 (259)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.78  E-value=1.4e-05  Score=69.01  Aligned_cols=65  Identities=18%  Similarity=0.287  Sum_probs=53.0

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCCC--C-CCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFVE--V-PKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~~--~-P~~-D~~~l  265 (266)
                      +..+|+|||||+|..+..+++..|..+++++|+ |.+++.++.          .+|++++.+|.++.  . +.. |+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            568999999999999999999888889999999 567776542          37999999998872  2 334 98875

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=97.78  E-value=2e-05  Score=64.07  Aligned_cols=64  Identities=19%  Similarity=0.199  Sum_probs=51.6

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEEeccCCCCCCCC-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-PGVEHVGGDMFVEVPKG-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gD~f~~~P~~-D~~~l  265 (266)
                      ....+|+|+|||+|.++..+++. +..+++++|+ |..++.++.+ .+++++.+|+++ +|.. |++++
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~  116 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIM  116 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEE
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEE
Confidence            35579999999999999999987 5567999999 6677776643 389999999987 4555 88875

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=97.76  E-value=3.1e-05  Score=63.52  Aligned_cols=65  Identities=12%  Similarity=0.141  Sum_probs=51.3

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCCCCCC-C-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      .....+|||||||+|.++..+++..  .+++++|+ |..++.++.    .++|+++.+|+.+..|. . |+++.
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  120 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVV  120 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEE
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEE
Confidence            4456899999999999999999986  47899999 456665543    36899999999984344 3 98875

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.76  E-value=3.6e-05  Score=64.72  Aligned_cols=65  Identities=15%  Similarity=0.059  Sum_probs=51.8

Q ss_pred             CCceEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHhhCCC-CCCceEEeccCCCC--CC---C-C-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSK----YPQLRGINFDL-PHVLKHAPS-CPGVEHVGGDMFVE--VP---K-G-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gD~f~~--~P---~-~-D~~~l  265 (266)
                      +..+|||||||+|..+..+++.    +|+.+++.+|+ |..++.++. .++|+++.+|..+.  +|   . . |++++
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~  158 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFI  158 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence            3479999999999999999998    79999999999 456665543 36899999999873  22   2 2 88774

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=97.76  E-value=4e-05  Score=63.25  Aligned_cols=64  Identities=14%  Similarity=0.146  Sum_probs=50.9

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C-------CCceEEeccCCC-CCCCC--CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----C-------PGVEHVGGDMFV-EVPKG--QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~-------~ri~~~~gD~f~-~~P~~--D~~~  264 (266)
                      ....+|||||||+|.++..++++  ..+++++|+ |..++.++.    .       .+++++.+|+.+ +++.+  |+++
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  106 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV  106 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence            36689999999999999999998  668999999 556665543    1       368999999998 66654  9887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       107 ~  107 (235)
T 3sm3_A          107 M  107 (235)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.76  E-value=2.4e-05  Score=66.47  Aligned_cols=65  Identities=17%  Similarity=0.273  Sum_probs=53.5

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-CCCceEEeccCCC-CCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-CPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ...+|+|||||.|.++..+++++|..+++++|+. ..++.++. .++++++.+|+.+ +++.+  |+++.
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  154 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR  154 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEE
Confidence            5679999999999999999999999999999994 56666554 3689999999987 56553  88863

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.75  E-value=5.4e-05  Score=65.98  Aligned_cols=72  Identities=11%  Similarity=0.162  Sum_probs=56.4

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----CCCceEEeccCCC-CCCCC--C
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----CPGVEHVGGDMFV-EVPKG--Q  261 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~~ri~~~~gD~f~-~~P~~--D  261 (266)
                      ..+++..+ .....+|+|||||+|.++..++++  ..+++++|+. ..++.++.    .++++++.+|+.+ ++|..  |
T Consensus        40 ~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD  116 (295)
T 3gru_A           40 NKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFN  116 (295)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCS
T ss_pred             HHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCcc
Confidence            45566665 556789999999999999999998  4678999994 45655543    3789999999998 77763  8


Q ss_pred             EEE
Q 046424          262 AIF  264 (266)
Q Consensus       262 ~~~  264 (266)
                      +++
T Consensus       117 ~Iv  119 (295)
T 3gru_A          117 KVV  119 (295)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.75  E-value=7.7e-06  Score=66.76  Aligned_cols=64  Identities=11%  Similarity=0.109  Sum_probs=50.6

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCCCCCCC-C-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      ....+|+|+|||.|.++..++...|+.+.+..|.. ..++.++.+       .++++  .|..+..|. . |+++.
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa  121 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFL  121 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhH
Confidence            46789999999999999999999999999999996 477766542       24555  787774444 3 98874

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=97.74  E-value=5.6e-05  Score=62.06  Aligned_cols=71  Identities=17%  Similarity=0.180  Sum_probs=53.0

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCC---CCCC-C-CEE
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFV---EVPK-G-QAI  263 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~---~~P~-~-D~~  263 (266)
                      +.+++.++  ....+|+|||||+|.++..+++. + .+++++|+ |..++.++.. ..+++.+|+.+   +++. . |++
T Consensus        23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~v   97 (230)
T 3cc8_A           23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDCV   97 (230)
T ss_dssp             HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEEE
T ss_pred             HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCEE
Confidence            34555543  35689999999999999999998 5 89999999 4577766643 24788999875   3443 3 888


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      ++
T Consensus        98 ~~   99 (230)
T 3cc8_A           98 IF   99 (230)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.73  E-value=7.6e-06  Score=67.72  Aligned_cols=65  Identities=11%  Similarity=0.036  Sum_probs=51.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCCCC--------CC-CE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVEVP--------KG-QA  262 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~P--------~~-D~  262 (266)
                      ...+|||||||+|..+..+++.+| +.+++.+|+ |..++.++.       .++|+++.+|..+..|        .. |+
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL  143 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence            567999999999999999999998 889999999 456666543       1579999999876322        33 88


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      +++
T Consensus       144 v~~  146 (225)
T 3tr6_A          144 IYI  146 (225)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.73  E-value=2.4e-05  Score=67.29  Aligned_cols=67  Identities=12%  Similarity=0.013  Sum_probs=54.8

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCC-CCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVE-VPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~-~P~~-D~~~l  265 (266)
                      +.+..+|+|+|||+|.++..++++.+..+++.+|+ |..++.++.+      ++++++.+|.++. .+.. |++++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~  192 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIM  192 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEE
Confidence            45668999999999999999999999899999999 6677766542      5789999999885 2224 88876

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=97.73  E-value=3.1e-05  Score=64.81  Aligned_cols=55  Identities=27%  Similarity=0.317  Sum_probs=46.1

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC---CCCceEEeccCCC
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS---CPGVEHVGGDMFV  255 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~---~~ri~~~~gD~f~  255 (266)
                      .....+|||||||+|.++..+++..+  +++++|+ |..++.++.   ..+++++.+|+.+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~  112 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLV  112 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTC
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccc
Confidence            34568899999999999999999998  7899999 456766543   2589999999998

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=97.73  E-value=4.4e-05  Score=64.55  Aligned_cols=67  Identities=12%  Similarity=0.259  Sum_probs=52.3

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCC-CCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFV-EVPK  259 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~-~~P~  259 (266)
                      ..+++..+ .....+|+|||||+|.++..++++.  .+++++|+ |..++.++.    .++++++.+|+.+ +++.
T Consensus        20 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~   92 (244)
T 1qam_A           20 DKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK   92 (244)
T ss_dssp             HHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred             HHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCccc
Confidence            34555555 5566899999999999999999997  68999999 456655443    3689999999998 6664

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=97.73  E-value=2.2e-05  Score=65.39  Aligned_cols=61  Identities=21%  Similarity=0.254  Sum_probs=48.7

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCC-C-CEEEe
Q 046424          203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      .+|||||||+|.++..+++  +..+++++|+ |..++.++..       .+|+++.+|+.+..|. . |+++.
T Consensus        68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~  138 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFD  138 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEE
T ss_pred             CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEE
Confidence            5999999999999999976  6778999999 5567665531       4699999999984444 3 98874

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.73  E-value=5.8e-05  Score=66.61  Aligned_cols=74  Identities=16%  Similarity=0.167  Sum_probs=55.4

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-----------------CCCceEEec
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPS-----------------CPGVEHVGG  251 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~-----------------~~ri~~~~g  251 (266)
                      .++..++ .....+|||||||+|.++..+++. .|+.+++.+|+ |..++.++.                 .++|+++.+
T Consensus        96 ~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~  174 (336)
T 2b25_A           96 MILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK  174 (336)
T ss_dssp             HHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred             HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence            3555555 556789999999999999999998 68899999999 455555433                 158999999


Q ss_pred             cCCCC---CCCC--CEEEe
Q 046424          252 DMFVE---VPKG--QAIFM  265 (266)
Q Consensus       252 D~f~~---~P~~--D~~~l  265 (266)
                      |+.+.   ++.+  |++++
T Consensus       175 d~~~~~~~~~~~~fD~V~~  193 (336)
T 2b25_A          175 DISGATEDIKSLTFDAVAL  193 (336)
T ss_dssp             CTTCCC-------EEEEEE
T ss_pred             ChHHcccccCCCCeeEEEE
Confidence            99883   4443  88875

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=97.72  E-value=2.5e-05  Score=66.46  Aligned_cols=63  Identities=6%  Similarity=0.004  Sum_probs=49.6

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-----------------------CCCceEEeccCCC-
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-----------------------CPGVEHVGGDMFV-  255 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-----------------------~~ri~~~~gD~f~-  255 (266)
                      ...+|+|||||+|..+..|++.  ..+++++|+. ..++.++.                       ..+|+++.+|+++ 
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            5579999999999999999987  5689999995 46665421                       2579999999999 


Q ss_pred             CCC--CC-CEEEe
Q 046424          256 EVP--KG-QAIFM  265 (266)
Q Consensus       256 ~~P--~~-D~~~l  265 (266)
                      +.+  .. |+++.
T Consensus       146 ~~~~~~~FD~V~~  158 (252)
T 2gb4_A          146 PRANIGKFDRIWD  158 (252)
T ss_dssp             GGGCCCCEEEEEE
T ss_pred             CcccCCCEEEEEE
Confidence            443  34 98874

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.72  E-value=1.7e-05  Score=67.41  Aligned_cols=66  Identities=15%  Similarity=0.150  Sum_probs=52.0

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCC-CCC----CC-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-EVP----KG-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~~P----~~-D~~~l  265 (266)
                      ....+|+|||||+|..+..++..+|+.+++++|.. ..++.++.      ..+|+++.+|..+ +..    .. |+++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA  157 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence            45689999999999999999999999999999984 45655543      2469999999876 321    33 88864

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.72  E-value=2.7e-05  Score=64.43  Aligned_cols=65  Identities=9%  Similarity=0.166  Sum_probs=52.1

Q ss_pred             CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC---CCC-----CC-CE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV---EVP-----KG-QA  262 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~---~~P-----~~-D~  262 (266)
                      +..+|||||||+|..+..++++.| +.+++.+|+ |..++.++.+       ++|+++.+|..+   ..+     .. |+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~  137 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  137 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence            568999999999999999999875 889999999 5677766542       579999999754   233     23 98


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      +++
T Consensus       138 V~~  140 (221)
T 3u81_A          138 VFL  140 (221)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.72  E-value=3.4e-05  Score=64.42  Aligned_cols=56  Identities=14%  Similarity=0.019  Sum_probs=45.8

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-H-HHhhC---CCC------CCceEEeccCCC
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-H-VLKHA---PSC------PGVEHVGGDMFV  255 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~-vi~~a---~~~------~ri~~~~gD~f~  255 (266)
                      ....+|||||||+|.++..+++++|+.+++++|+. + +++.|   +..      ++|+++.+|..+
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~   89 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES   89 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH
Confidence            35689999999999999999999999999999996 4 44433   432      579999999865

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.70  E-value=1e-05  Score=68.00  Aligned_cols=64  Identities=13%  Similarity=0.118  Sum_probs=49.0

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCceEEeccCCC---CCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-----CPGVEHVGGDMFV---EVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----~~ri~~~~gD~f~---~~P~~--D~~~l  265 (266)
                      ...+|||||||.|..+..+++..|. +.+++|+ |.+++.+++     ..+++++.+|...   ++|.+  |.+++
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~  134 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEE
Confidence            4589999999999999999998885 7889998 568887764     2567888887543   45553  76653

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.69  E-value=3.5e-05  Score=69.45  Aligned_cols=62  Identities=19%  Similarity=0.179  Sum_probs=49.6

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEeccCCC-CCCCC-CEEE
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGDMFV-EVPKG-QAIF  264 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~P~~-D~~~  264 (266)
                      .++|||||||+|.+++..+++.. -+++.+|..++++.|+.       .++|+++.+|+.+ ++|.. |+++
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~Dviv  154 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIV  154 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEE
T ss_pred             CCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEE
Confidence            47899999999999887776644 47899998766665543       2789999999998 78876 9885

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.69  E-value=4.1e-05  Score=68.96  Aligned_cols=66  Identities=17%  Similarity=0.103  Sum_probs=52.8

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEeccCCC-CCCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      .....+|||||||+|.++..++++. ..+++++|....++.++.       .++|+++.+|+.+ +.|.. |+++.
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~  135 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIIS  135 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEE
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEE
Confidence            4456899999999999999999883 348999999876666543       1679999999988 67655 99874

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.69  E-value=3.6e-05  Score=66.34  Aligned_cols=65  Identities=17%  Similarity=0.060  Sum_probs=52.6

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCC-C-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      +...+|+|+|||+|.++..+++..+. +++.+|+ |..++.++.+       .+++++.+|+++..+. . |++++
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~  198 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM  198 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEE
Confidence            35689999999999999999999887 8999999 4567665531       4699999999984433 3 98876

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=97.69  E-value=4.5e-05  Score=63.42  Aligned_cols=63  Identities=17%  Similarity=0.170  Sum_probs=51.1

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      ...+|+|||||+|.++..+++.  ..+++++|+ |..++.++..     .+++++.+|+.+ +.+.. |+++.
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  107 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITC  107 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEE
Confidence            4589999999999999999998  457999999 5677766542     289999999988 56655 99875

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.68  E-value=1.9e-05  Score=64.70  Aligned_cols=65  Identities=22%  Similarity=0.172  Sum_probs=51.6

Q ss_pred             CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCC--CCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVE--VPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~--~P~~-D~~~l  265 (266)
                      +..+|||||||+|..+..+++..| +.+++.+|+ |..++.++.+       ++|+++.+|.++.  ...+ |++++
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  132 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFM  132 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEE
Confidence            467999999999999999999998 889999999 5577666532       5799999998762  2233 77764

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.67  E-value=2.8e-05  Score=61.95  Aligned_cols=71  Identities=18%  Similarity=0.178  Sum_probs=54.5

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCC--C-
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPK--G-  260 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~--~-  260 (266)
                      +++.++ .....+|+|||||+|.++..+++..  .+++++|. |..++.++.+       ++++++.+|+.+++|.  . 
T Consensus        25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  101 (192)
T 1l3i_A           25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI  101 (192)
T ss_dssp             HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred             HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence            344444 5567899999999999999999988  78999999 5566665531       6899999998774442  3 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |+++.
T Consensus       102 D~v~~  106 (192)
T 1l3i_A          102 DIAVV  106 (192)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            88875

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.67  E-value=8.8e-05  Score=60.30  Aligned_cols=61  Identities=20%  Similarity=0.326  Sum_probs=48.4

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEEeccCCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVE  256 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~~  256 (266)
                      ..+.+.+..++...+|||+|||+|.++..++++  ..+++.+|+.+.    ...++|+++.+|+.+.
T Consensus        14 ~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~   74 (191)
T 3dou_A           14 EFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKE   74 (191)
T ss_dssp             HHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSS
T ss_pred             HHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCH
Confidence            345566653456789999999999999999988  778999999653    2236899999999873

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.67  E-value=3.6e-05  Score=64.89  Aligned_cols=41  Identities=27%  Similarity=0.169  Sum_probs=35.9

Q ss_pred             CCceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhhCC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSK--YPQLRGINFDL-PHVLKHAP  241 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~--~P~l~~~v~Dl-p~vi~~a~  241 (266)
                      ...+|+|+|||+|.++..+++.  +|..+++++|+ |..++.++
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~   94 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAA   94 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHH
Confidence            4579999999999999999998  88889999999 56777665

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.66  E-value=1.6e-05  Score=67.63  Aligned_cols=64  Identities=16%  Similarity=0.222  Sum_probs=50.0

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----C-CceEEeccCCCCCCC-C-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----P-GVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~-ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      ....+|+|||||+|.++..+++..+  +++++|+ |..++.++.+    . .+++..+|+.+.+|. . |+++.
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~  190 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVA  190 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEE
Confidence            4568999999999999999999877  8999999 5566665542    1 189999998876554 3 88864

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=97.65  E-value=5.4e-05  Score=64.99  Aligned_cols=72  Identities=11%  Similarity=0.127  Sum_probs=54.7

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC-CE
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG-QA  262 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~-D~  262 (266)
                      .+++.++ .....+|||||||+|.++..+++.  ..+++++|+ |..++.++..     -+++++.+|+.+ +.+.. |+
T Consensus       111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~  187 (286)
T 3m70_A          111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF  187 (286)
T ss_dssp             HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred             HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence            4444444 335689999999999999999998  568999999 4566665532     289999999998 44444 99


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      ++.
T Consensus       188 i~~  190 (286)
T 3m70_A          188 IVS  190 (286)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=97.65  E-value=5.9e-05  Score=61.82  Aligned_cols=72  Identities=14%  Similarity=0.079  Sum_probs=53.8

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCCC-----CCC-C-CE
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFVE-----VPK-G-QA  262 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~~-----~P~-~-D~  262 (266)
                      .+++.+. .....+|||||||+|.++..+++.  ..+++++|+ |..++.++...++++..+|+.+-     .+. . |+
T Consensus        43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  119 (227)
T 3e8s_A           43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL  119 (227)
T ss_dssp             HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred             HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence            3445444 335589999999999999999998  668999999 56777777667888888887652     222 2 88


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      ++.
T Consensus       120 v~~  122 (227)
T 3e8s_A          120 ICA  122 (227)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.65  E-value=7.1e-05  Score=63.60  Aligned_cols=68  Identities=24%  Similarity=0.285  Sum_probs=53.7

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--CCceEEeccCCC-CCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--PGVEHVGGDMFV-EVPK  259 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--~ri~~~~gD~f~-~~P~  259 (266)
                      ..+++..+ .....+|+|||||+|.++..++++ +..+++++|+. ..++.++.+  .+++++.+|+.+ ++|.
T Consensus        21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred             HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence            45566665 556789999999999999999987 56789999995 466666543  579999999998 6664

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.65  E-value=0.00012  Score=61.23  Aligned_cols=72  Identities=18%  Similarity=0.163  Sum_probs=56.0

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCCC-CC-C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVEV-PK-G  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~-P~-~  260 (266)
                      .++...+ .....+|+|||||+|.++..++++  ..+++++|+ |..++.++.       .++++++.+|+.+.. +. .
T Consensus        82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  158 (248)
T 2yvl_A           82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI  158 (248)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred             HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence            3445554 556789999999999999999999  778999997 456665543       168999999999865 54 3


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++++
T Consensus       159 ~D~v~~  164 (248)
T 2yvl_A          159 FHAAFV  164 (248)
T ss_dssp             BSEEEE
T ss_pred             ccEEEE
Confidence             99875

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=97.64  E-value=5.4e-05  Score=61.35  Aligned_cols=60  Identities=17%  Similarity=0.143  Sum_probs=48.9

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC--CEEEe
Q 046424          204 QLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       204 ~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      +|+|||||+|.++..+++.  ..+++++|+ |..++.++..     .+++++.+|+.+ ++|.+  |+++.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  100 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVS  100 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEE
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEE
Confidence            9999999999999999987  568999999 4577666542     389999999998 66643  98874

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.63  E-value=2.5e-05  Score=69.32  Aligned_cols=66  Identities=17%  Similarity=0.230  Sum_probs=53.7

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCC---CCCC-C-CEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFV---EVPK-G-QAI  263 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~---~~P~-~-D~~  263 (266)
                      ....+|||||||+|..+..+++..|..+++++|+ |.+++.++.          .+||+++.+|.++   ..+. . |+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            4668999999999999999999988999999999 557776543          2689999999876   2443 3 998


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      +.
T Consensus       199 i~  200 (334)
T 1xj5_A          199 IV  200 (334)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.63  E-value=3e-05  Score=69.77  Aligned_cols=67  Identities=13%  Similarity=0.006  Sum_probs=55.3

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCCC-C-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVPK-G-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~-~-D~~~l  265 (266)
                      |....+|+|+|||+|.+++.+++..+..+++++|+ |.+++.++.+       ++|+++.+|+.+ +.|. . |+++.
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~  292 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAIS  292 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEE
Confidence            55678999999999999999999999888999999 4577766542       589999999998 6553 3 88875

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.63  E-value=6.4e-05  Score=65.70  Aligned_cols=65  Identities=25%  Similarity=0.312  Sum_probs=52.4

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----C-CCceEEeccCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----C-PGVEHVGGDMFV  255 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~-~ri~~~~gD~f~  255 (266)
                      ..+++.+. .....++||+|||+|.++..+++++|+.+++.+|. |..++.++.    . ++++++.+||.+
T Consensus        16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~   86 (301)
T 1m6y_A           16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE   86 (301)
T ss_dssp             HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence            34555555 55568999999999999999999999999999999 457766543    1 689999999765

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=97.62  E-value=2.8e-05  Score=65.10  Aligned_cols=64  Identities=14%  Similarity=0.110  Sum_probs=50.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC-CCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ...+|||||||+|.++..++++. ..+++++|+ |..++.++..      .+++++.+|+.+ +.+.+  |++++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  152 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWI  152 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEE
Confidence            46899999999999999999987 568999998 5577665532      358999999877 55553  98875

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=97.61  E-value=3.4e-05  Score=66.39  Aligned_cols=64  Identities=19%  Similarity=0.186  Sum_probs=50.4

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----------CCCceEEeccCCC-C---CCCC--CE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----------CPGVEHVGGDMFV-E---VPKG--QA  262 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----------~~ri~~~~gD~f~-~---~P~~--D~  262 (266)
                      .+..+|||||||+|.++..++++.+  +++++|+. ..++.++.          ..++.+..+|+.+ +   ++.+  |+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~  133 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA  133 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence            3568999999999999999999854  89999994 56666532          1578999999987 5   4543  98


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      |+.
T Consensus       134 V~~  136 (293)
T 3thr_A          134 VIC  136 (293)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.61  E-value=8.1e-05  Score=61.63  Aligned_cols=66  Identities=14%  Similarity=0.155  Sum_probs=52.5

Q ss_pred             CCCCceEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccC--CCCCCCC--CEEEe
Q 046424          199 FEGLNQLVDVAGG-LGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDM--FVEVPKG--QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG-~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~--f~~~P~~--D~~~l  265 (266)
                      .+...+|+||||| +|.++..+++.. ..+++++|+ |..++.++.+     -+++++.+|+  +.++|.+  |+++.
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~  129 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFS  129 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEE
Confidence            3467899999999 999999999987 788999999 5567766532     2799999996  4566643  98874

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.60  E-value=3.2e-05  Score=64.81  Aligned_cols=55  Identities=13%  Similarity=0.105  Sum_probs=46.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV  255 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~  255 (266)
                      +..+|+|||||+|..+..+++.+| ..+++++|. |..++.++.+       .+|+++.+|..+
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE  123 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            568999999999999999999998 789999999 5566665532       469999999876

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.60  E-value=3.3e-05  Score=67.54  Aligned_cols=66  Identities=15%  Similarity=0.235  Sum_probs=53.1

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCC-C--CCC-C-CEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFV-E--VPK-G-QAI  263 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~-~--~P~-~-D~~  263 (266)
                      .+..+|+|||||.|..+..+++..|..+++++|+ |.+++.++.          .+|++++.+|.++ .  .+. . |+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            3568999999999999999999888899999999 557766542          2689999999987 2  133 4 988


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      +.
T Consensus       174 i~  175 (304)
T 3bwc_A          174 II  175 (304)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=97.60  E-value=3e-05  Score=67.89  Aligned_cols=66  Identities=15%  Similarity=0.244  Sum_probs=53.3

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCC--CC-CCC-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFV--EV-PKG-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~--~~-P~~-D~~~  264 (266)
                      .+..+|+|||||+|..+..+++..|..+++++|+ |.+++.+++          .+|++++.+|.++  +. +.. |+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            4568999999999999999999989999999999 567766542          3689999999876  22 334 8887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       174 ~  174 (304)
T 2o07_A          174 T  174 (304)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.60  E-value=1.8e-05  Score=65.65  Aligned_cols=66  Identities=6%  Similarity=-0.000  Sum_probs=52.5

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCC---CC-----CC-C
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVE---VP-----KG-Q  261 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~---~P-----~~-D  261 (266)
                      .+..+|+|||||+|..+..+++..| +.+++.+|+ |..++.++.       .++|+++.+|.++.   ++     .. |
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            3568999999999999999999988 789999999 666666553       16899999998763   21     34 8


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      ++++
T Consensus       148 ~v~~  151 (229)
T 2avd_A          148 VAVV  151 (229)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=97.59  E-value=9.9e-05  Score=63.29  Aligned_cols=65  Identities=14%  Similarity=0.052  Sum_probs=50.8

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CC-CC-C-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EV-PK-G-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~-P~-~-D~~~l  265 (266)
                      ....+|||||||+|.++..+++. +..+++++|+ |..++.++..       .+|+++.+|+.+ ++ +. . |+++.
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~  139 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISS  139 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEE
Confidence            45689999999999999998776 5668999999 4566665431       469999999998 66 34 3 98874

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=97.59  E-value=5.9e-05  Score=61.30  Aligned_cols=65  Identities=14%  Similarity=0.118  Sum_probs=49.4

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC--CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ....+|+|||||+|.....++.. +..+++++|. |..++.++..     .+++++.+|+.+ ++|.+  |+++.
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~   95 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYS   95 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEE
Confidence            35689999999999985555544 5679999999 4566665532     679999999988 66654  98874

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=97.59  E-value=5.6e-05  Score=65.90  Aligned_cols=73  Identities=15%  Similarity=0.231  Sum_probs=51.5

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC-CCCCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV-EVPKGQ  261 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~-~~P~~D  261 (266)
                      ..+++..+ .....+|+|||||+|.++..++++  ..+++++|+ |..++.++.      .++++++.+|+.+ +.+.-|
T Consensus        32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D  108 (299)
T 2h1r_A           32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFD  108 (299)
T ss_dssp             HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCS
T ss_pred             HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCC
Confidence            34555555 556789999999999999999987  458999999 456665543      2689999999998 555448


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus       109 ~Vv~  112 (299)
T 2h1r_A          109 VCTA  112 (299)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8764

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.59  E-value=4.6e-05  Score=61.32  Aligned_cols=64  Identities=11%  Similarity=0.015  Sum_probs=50.4

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCC---CC-CC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVE---VP-KG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~---~P-~~-D~~~l  265 (266)
                      ...+|+|+|||+|.++..++++ +..+++.+|+ |..++.++.+      ++++++.+|+.+.   ++ .. |++++
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~  119 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLA  119 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEE
Confidence            4579999999999999988774 6668999999 5677776542      5899999999872   33 33 99875

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.59  E-value=9.5e-05  Score=63.28  Aligned_cols=62  Identities=15%  Similarity=0.044  Sum_probs=51.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----------CCceEEeccCCCCCCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----------PGVEHVGGDMFVEVPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----------~ri~~~~gD~f~~~P~~-D~~~l  265 (266)
                      +..+|+|||||+|..+..+++. | .+++++|+ |.+++.++++          +|++++.+|.++-. .. |++++
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~  145 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFC  145 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEE
Confidence            5689999999999999999998 8 89999999 5688877652          58999999998744 44 88875

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.58  E-value=0.00012  Score=60.68  Aligned_cols=72  Identities=10%  Similarity=0.176  Sum_probs=55.0

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----CCceEEeccCCCCCCC--C-CE
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----PGVEHVGGDMFVEVPK--G-QA  262 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~ri~~~~gD~f~~~P~--~-D~  262 (266)
                      .+++.+. .....+|+|||||+|.++..+++..  .+++++|. |..++.++..    .+++++.+|+.+..|.  . |+
T Consensus        61 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  137 (231)
T 1vbf_A           61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR  137 (231)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccE
Confidence            4455554 5566899999999999999999987  68999998 5566665532    3899999999885442  3 88


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      ++.
T Consensus       138 v~~  140 (231)
T 1vbf_A          138 VVV  140 (231)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.58  E-value=3e-05  Score=67.09  Aligned_cols=68  Identities=16%  Similarity=0.235  Sum_probs=52.9

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCC--CeEEEeech-HHHhhCCCC--CCceEEeccCCC-CCCC
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ--LRGINFDLP-HVLKHAPSC--PGVEHVGGDMFV-EVPK  259 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--l~~~v~Dlp-~vi~~a~~~--~ri~~~~gD~f~-~~P~  259 (266)
                      .+++..+ .....+|+|||||+|.++..++++.+.  .+++++|+. ..++.+++.  ++++++.+|+++ +++.
T Consensus        33 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           33 AIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS  106 (279)
T ss_dssp             HHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred             HHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence            4556555 556789999999999999999998764  568999994 466665543  689999999998 5543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.58  E-value=3.3e-05  Score=67.33  Aligned_cols=65  Identities=17%  Similarity=0.214  Sum_probs=52.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCCC--C-CCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFVE--V-PKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~~--~-P~~-D~~~l  265 (266)
                      ...+|+|||||+|..+..+++..|..+++++|+ |.+++.+++          .+|++++.+|.++.  . +.. |+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            458999999999999999999888899999999 557765542          26899999998762  2 334 98874

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.57  E-value=7.8e-05  Score=73.02  Aligned_cols=65  Identities=18%  Similarity=0.175  Sum_probs=52.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHC-CCCeEEEeech-HHHhhCCC------------CCCceEEeccCCC-CCCC-C-CEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLP-HVLKHAPS------------CPGVEHVGGDMFV-EVPK-G-QAI  263 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~a~~------------~~ri~~~~gD~f~-~~P~-~-D~~  263 (266)
                      ...+|||||||+|.++..+++.. |..+++++|+. ..++.|+.            .++|+++.+|+.+ +.+. . |++
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV  800 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG  800 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence            56899999999999999999998 66799999994 56665533            2579999999998 5554 3 998


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      +.
T Consensus       801 V~  802 (950)
T 3htx_A          801 TC  802 (950)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.57  E-value=8.2e-05  Score=60.55  Aligned_cols=63  Identities=11%  Similarity=0.037  Sum_probs=49.5

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----C-CceEEeccCCCCCCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----P-GVEHVGGDMFVEVPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~-ri~~~~gD~f~~~P~~-D~~~l  265 (266)
                      ...+|+|+|||+|.++..+++..+ .+++++|+ |..++.++.+    . +++++.+|+.+ +|.. |++++
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~  118 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIM  118 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEE
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEE
Confidence            457999999999999999998844 37999999 5677665542    2 79999999987 4444 88875

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=97.56  E-value=0.00013  Score=66.03  Aligned_cols=71  Identities=14%  Similarity=0.170  Sum_probs=54.5

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechH-HHhhCCCCCCceEEeccCCCCCCC-C-CEEEe
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPH-VLKHAPSCPGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~~a~~~~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      .+++.+. .....+|+|+|||+|.++..+++++ +..+++++|+.+ .++.+   ++++++.+|+++..+. . |+++.
T Consensus        30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~  104 (421)
T 2ih2_A           30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG  104 (421)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred             HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence            3444444 3345699999999999999999987 788999999954 55444   6899999999985443 4 99875

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.56  E-value=1.4e-05  Score=67.46  Aligned_cols=65  Identities=15%  Similarity=0.153  Sum_probs=51.5

Q ss_pred             CCceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCC-------CCCceEEeccCCCCC--------CCC-CE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPS-------CPGVEHVGGDMFVEV--------PKG-QA  262 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~-------~~ri~~~~gD~f~~~--------P~~-D~  262 (266)
                      +..+|||||||+|..+..+++..| +.+++.+|+. ..++.++.       .++|+++.+|..+..        +.. |+
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~  139 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF  139 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence            568999999999999999999997 8899999994 45555443       258999999987732        234 88


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      +++
T Consensus       140 V~~  142 (242)
T 3r3h_A          140 IFI  142 (242)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.55  E-value=9.2e-05  Score=64.90  Aligned_cols=74  Identities=19%  Similarity=0.247  Sum_probs=56.5

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCC-C-C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVP-K-G  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P-~-~  260 (266)
                      .+++.+. .....+|+|||||.|.++..+++..+ +.+++++|+ |..++.++.+      ++|+++.+|+.+..| . .
T Consensus        66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~  144 (317)
T 1dl5_A           66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (317)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCC
Confidence            3445454 55668999999999999999999988 488999998 4566665532      569999999987443 2 3


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |+++.
T Consensus       145 fD~Iv~  150 (317)
T 1dl5_A          145 YDVIFV  150 (317)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence             88875

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.55  E-value=0.00014  Score=59.47  Aligned_cols=62  Identities=16%  Similarity=0.015  Sum_probs=46.5

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEEeccCCC-CCCCC--CEEEe
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      .+++.+.......+|+|||||+|.++..+.     .+++++|+.+.        +++++.+|+.+ ++|.+  |+++.
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~  121 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVF  121 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEE
Confidence            344444323456899999999999998873     57899998654        68889999988 66654  88874

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.55  E-value=2.8e-05  Score=68.55  Aligned_cols=65  Identities=14%  Similarity=0.068  Sum_probs=52.6

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCCC---CCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFVE---VPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~~---~P~~-D~~~l  265 (266)
                      ...+|+|||||+|..+..+++..|..+++++|+ |.+++.+++          .+|++++.+|.++.   .+.. |+++.
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            568999999999999999999888999999999 567776532          26899999998763   2334 88874

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=97.55  E-value=0.00011  Score=66.72  Aligned_cols=74  Identities=9%  Similarity=0.007  Sum_probs=57.1

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEEee
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ--------------------------------------LRGINFD  232 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~v~D  232 (266)
                      .++.... |.+...|+|.+||+|.++++.+....+                                      .+++++|
T Consensus       192 ~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvD  270 (393)
T 3k0b_A          192 ALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGD  270 (393)
T ss_dssp             HHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEE
T ss_pred             HHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEE
Confidence            4555555 877789999999999999998876554                                      5699999


Q ss_pred             c-hHHHhhCCCC-------CCceEEeccCCC-CCCCC-CEEEe
Q 046424          233 L-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       233 l-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      + |.+++.|+.+       ++|+++.+|+++ +.|.. |+++.
T Consensus       271 id~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~  313 (393)
T 3k0b_A          271 IDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVA  313 (393)
T ss_dssp             SCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEE
Confidence            9 4577766542       579999999998 44444 98875

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.54  E-value=2.3e-05  Score=66.38  Aligned_cols=65  Identities=11%  Similarity=0.145  Sum_probs=52.2

Q ss_pred             CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCC---C------CCC-C
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVE---V------PKG-Q  261 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~---~------P~~-D  261 (266)
                      +..+|||||||+|..+..+++..| +.+++.+|+ |..++.++.+       ++|+++.+|..+.   +      +.. |
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  158 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  158 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence            568999999999999999999998 889999999 5566665531       5899999998762   2      233 9


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      ++++
T Consensus       159 ~V~~  162 (247)
T 1sui_A          159 FIFV  162 (247)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.52  E-value=3.4e-05  Score=66.75  Aligned_cols=66  Identities=14%  Similarity=0.074  Sum_probs=53.3

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCCC---CCCC-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFVE---VPKG-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~~---~P~~-D~~~  264 (266)
                      ....+|+|||||.|..+..+++..|..+++++|+ |.+++.++.          .+|++++.+|..+.   .+.. |+++
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            3568999999999999999999888999999999 567776542          26899999998762   3444 8887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      .
T Consensus       157 ~  157 (283)
T 2i7c_A          157 V  157 (283)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.52  E-value=9.9e-05  Score=63.54  Aligned_cols=65  Identities=15%  Similarity=0.077  Sum_probs=50.0

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC---CCCceEEeccCCC-CCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS---CPGVEHVGGDMFV-EVP  258 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~---~~ri~~~~gD~f~-~~P  258 (266)
                      ..+++..+ .... +|+|||||+|.++..++++.  .+++++|+. ..++.+++   .++++++.+|+++ +++
T Consensus        37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~  106 (271)
T 3fut_A           37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWE  106 (271)
T ss_dssp             HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGG
T ss_pred             HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChh
Confidence            34556555 5555 99999999999999999986  578999984 45555443   2689999999998 665

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.52  E-value=3.5e-05  Score=67.67  Aligned_cols=65  Identities=17%  Similarity=0.233  Sum_probs=52.4

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------CCCceEEeccCCCC--C-CCC-CEEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-----------CPGVEHVGGDMFVE--V-PKG-QAIF  264 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~~--~-P~~-D~~~  264 (266)
                      ...+|+|||||.|..+..+++..|..+++++|+ |.+++.+++           .+|++++.+|.++.  . +.. |+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            568999999999999999999888899999999 457665532           36899999998762  2 334 8887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      .
T Consensus       157 ~  157 (314)
T 1uir_A          157 I  157 (314)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.52  E-value=4.9e-05  Score=62.14  Aligned_cols=63  Identities=16%  Similarity=0.152  Sum_probs=49.1

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC------CCceEEeccCCC--CCCC-C-CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFV--EVPK-G-QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~--~~P~-~-D~~~l  265 (266)
                      ..+|+|+|||+|.++..++++.. .+++.+|+. ..++.++.+      ++|+++.+|+.+  +.+. . |++++
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~  128 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFV  128 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEE
Confidence            47999999999999999888764 379999994 577766542      589999999887  3333 3 88875

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.51  E-value=0.00029  Score=56.61  Aligned_cols=60  Identities=18%  Similarity=0.129  Sum_probs=47.4

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCC---------CeEEEeechHHHhhCCCCCCceEE-eccCCC
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ---------LRGINFDLPHVLKHAPSCPGVEHV-GGDMFV  255 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~---------l~~~v~Dlp~vi~~a~~~~ri~~~-~gD~f~  255 (266)
                      +.+.+..+....+|||||||+|.++..+++++|.         .+++++|+.+..    ..++++++ .+|+.+
T Consensus        13 l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~   82 (196)
T 2nyu_A           13 VNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTD   82 (196)
T ss_dssp             HHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTS
T ss_pred             HHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCC
Confidence            3444442456689999999999999999999875         889999997631    23679999 999887

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.51  E-value=3.6e-05  Score=64.29  Aligned_cols=63  Identities=22%  Similarity=0.352  Sum_probs=50.4

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCC-C-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      ...+|+|||||+|.++..+++..  .+++++|+ |..++.++.+       ++++++.+|+.+..+. . |++++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~  150 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFL  150 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEE
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEE
Confidence            46899999999999999999985  78999999 4567666542       4899999999883343 3 98875

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.51  E-value=4.2e-05  Score=66.05  Aligned_cols=64  Identities=16%  Similarity=0.261  Sum_probs=50.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCC----------------CCCCceEEeccCCCCC--CCC-
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAP----------------SCPGVEHVGGDMFVEV--PKG-  260 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~----------------~~~ri~~~~gD~f~~~--P~~-  260 (266)
                      ...+|+|||||+|..+..+++. |..+++++|+ |.+++.++                ..+|++++.+|.++.+  +.. 
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f  153 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  153 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence            5689999999999999999998 9889999999 55766543                2368999999986522  344 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |+|++
T Consensus       154 D~Ii~  158 (281)
T 1mjf_A          154 DVIIA  158 (281)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            88874

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.50  E-value=3.5e-05  Score=64.34  Aligned_cols=64  Identities=13%  Similarity=0.117  Sum_probs=49.2

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-----CCCceEEeccCCC---CCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-----CPGVEHVGGDMFV---EVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-----~~ri~~~~gD~f~---~~P~~--D~~~l  265 (266)
                      ...+|||||||+|.++..+++..+. +++++|+. ..++.++.     ..+++++.+|+.+   ++|.+  |+++.
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  134 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCC-eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEE
Confidence            4579999999999999999765554 88999994 56666543     2579999999876   46654  98875

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=97.50  E-value=8.9e-05  Score=67.01  Aligned_cols=74  Identities=16%  Similarity=0.124  Sum_probs=56.9

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEEee
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ--------------------------------------LRGINFD  232 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~v~D  232 (266)
                      .++.... |.....|+|++||+|.++++++....+                                      .+++++|
T Consensus       186 ~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvD  264 (385)
T 3ldu_A          186 GLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYD  264 (385)
T ss_dssp             HHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEE
T ss_pred             HHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEE
Confidence            4455444 777789999999999999998876432                                      6799999


Q ss_pred             c-hHHHhhCCCC-------CCceEEeccCCC-CCCCC-CEEEe
Q 046424          233 L-PHVLKHAPSC-------PGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       233 l-p~vi~~a~~~-------~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      + |.+++.|+.+       ++|++..+|+++ +.|.. |+++.
T Consensus       265 id~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~  307 (385)
T 3ldu_A          265 IDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIIT  307 (385)
T ss_dssp             SCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEE
Confidence            9 4578777652       479999999998 44444 98875

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.49  E-value=3e-05  Score=65.16  Aligned_cols=66  Identities=11%  Similarity=0.107  Sum_probs=52.7

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCC---C------CCC-
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVE---V------PKG-  260 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~---~------P~~-  260 (266)
                      .+..+|+|||||+|..+..+++..| +.+++.+|+ |..++.++++       ++|+++.+|.++-   +      +.. 
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            3568999999999999999999988 789999999 5566665531       5899999998762   2      234 


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |++++
T Consensus       149 D~I~~  153 (237)
T 3c3y_A          149 DFGFV  153 (237)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            88875

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.48  E-value=4.9e-05  Score=63.27  Aligned_cols=63  Identities=11%  Similarity=0.060  Sum_probs=49.9

Q ss_pred             ceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCC-------C-CCceEEeccCCC---CCC-CC-CEEEe
Q 046424          203 NQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPS-------C-PGVEHVGGDMFV---EVP-KG-QAIFM  265 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~-------~-~ri~~~~gD~f~---~~P-~~-D~~~l  265 (266)
                      .+|+|||||+|..+..++++.| +.+++.+|+. ..++.++.       . ++|+++.+|..+   .++ .. |++++
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~  135 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG  135 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence            3999999999999999999986 8899999994 46665543       1 489999999876   242 34 99876

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.48  E-value=8.3e-05  Score=63.45  Aligned_cols=66  Identities=11%  Similarity=0.161  Sum_probs=51.7

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----CCCceEEeccCCC-CCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----CPGVEHVGGDMFV-EVP  258 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~~ri~~~~gD~f~-~~P  258 (266)
                      ..+++..+ .....+|+|||||+|.++..++++.  .+++++|+. ..++.+++    .++++++.+|+++ +++
T Consensus        19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~   90 (255)
T 3tqs_A           19 QKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS   90 (255)
T ss_dssp             HHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred             HHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence            34566665 5567899999999999999999985  579999994 46665543    3789999999998 554

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.47  E-value=0.00012  Score=61.84  Aligned_cols=64  Identities=11%  Similarity=-0.005  Sum_probs=51.5

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-----CCCceEEeccCCCC-CCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-----CPGVEHVGGDMFVE-VPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-----~~ri~~~~gD~f~~-~P~~-D~~~l  265 (266)
                      +..+.+|+|||||.|-++..+.   |..+.+..|+. ..++.++.     ....++..+|+... .|.. |++++
T Consensus       103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLl  174 (253)
T 3frh_A          103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALI  174 (253)
T ss_dssp             SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEE
T ss_pred             CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHH
Confidence            3457899999999999999888   99999999995 46666554     26788999999994 5544 99854

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.46  E-value=0.00024  Score=65.06  Aligned_cols=74  Identities=11%  Similarity=0.145  Sum_probs=53.7

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhC-------CC--------CCCceEEeccCC
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHA-------PS--------CPGVEHVGGDMF  254 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a-------~~--------~~ri~~~~gD~f  254 (266)
                      .+++.+. .....+|||||||+|.++..+++.+|..+++++|+.+ .++.|       +.        .++|+++.+|-+
T Consensus       233 ~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~  311 (433)
T 1u2z_A          233 DVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF  311 (433)
T ss_dssp             HHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred             HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence            3455555 5667899999999999999999999988999999954 44444       21        258999887544


Q ss_pred             -CC--C---CC-CCEEEe
Q 046424          255 -VE--V---PK-GQAIFM  265 (266)
Q Consensus       255 -~~--~---P~-~D~~~l  265 (266)
                       .+  +   .. .|+|++
T Consensus       312 ~~~~~~~~~~~~FDvIvv  329 (433)
T 1u2z_A          312 VDNNRVAELIPQCDVILV  329 (433)
T ss_dssp             TTCHHHHHHGGGCSEEEE
T ss_pred             ccccccccccCCCCEEEE
Confidence             32  2   12 398875

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.46  E-value=2.5e-05  Score=61.30  Aligned_cols=63  Identities=19%  Similarity=0.173  Sum_probs=49.7

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----C-CceEEeccCCCCCC------CC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----P-GVEHVGGDMFVEVP------KG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~-ri~~~~gD~f~~~P------~~-D~~~l  265 (266)
                      ...+|+|+|||+|.++..++++.++  ++++|+ |..++.++.+    . +++++.+|+.+..|      .. |++++
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~  116 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEE
Confidence            4579999999999999999999886  999999 5677766542    2 79999999887322      13 88765

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.46  E-value=0.00016  Score=65.31  Aligned_cols=74  Identities=15%  Similarity=0.030  Sum_probs=56.9

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCC--------------------------------------CeEEEee
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ--------------------------------------LRGINFD  232 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~--------------------------------------l~~~v~D  232 (266)
                      .++.... |.....|+|.+||+|.++++.+....+                                      .+++++|
T Consensus       185 all~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvD  263 (384)
T 3ldg_A          185 AIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFD  263 (384)
T ss_dssp             HHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEE
T ss_pred             HHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEE
Confidence            4455445 777899999999999999998876554                                      5699999


Q ss_pred             ch-HHHhhCCCC-------CCceEEeccCCC-CCCCC-CEEEe
Q 046424          233 LP-HVLKHAPSC-------PGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       233 lp-~vi~~a~~~-------~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      +. .+++.++.+       ++|+++.+|+++ +.|.. |+++.
T Consensus       264 id~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~  306 (384)
T 3ldg_A          264 FDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLIS  306 (384)
T ss_dssp             SCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEE
Confidence            94 577766542       579999999998 44444 98875

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.45  E-value=4.3e-05  Score=67.21  Aligned_cols=65  Identities=17%  Similarity=0.240  Sum_probs=52.5

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCCC--C-CCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFVE--V-PKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~~--~-P~~-D~~~l  265 (266)
                      +..+|+|||||+|..+..+++..|..+++++|+ |.+++.++.          .+||+++.+|.++.  . +.. |+|++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            568999999999999999999888999999999 567766542          26899999998763  2 234 88874

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=97.45  E-value=0.00048  Score=59.87  Aligned_cols=88  Identities=16%  Similarity=0.058  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhcchhhHHHHHHHcc-CCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------
Q 046424          174 NNLFNQSMHNHTTIVMKEILEIYK-GFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--------  243 (266)
Q Consensus       174 ~~~f~~~m~~~~~~~~~~i~~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--------  243 (266)
                      .+.|+.++...-.   ..+++.+. ......+|+|||||+|.++..+++ .+..+++++|+. ..++.++..        
T Consensus         9 lr~~~~~~k~~l~---~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~   84 (313)
T 3bgv_A            9 LRNFNNWMKSVLI---GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRR   84 (313)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHTC--CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSS
T ss_pred             hhhccHHHHHHHH---HHHHHHhhhccCCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcc
Confidence            3566666665322   23333322 023568999999999999999988 467789999994 466555431        


Q ss_pred             -----CCceEEeccCCC-C----CC--C-C-CEEEe
Q 046424          244 -----PGVEHVGGDMFV-E----VP--K-G-QAIFM  265 (266)
Q Consensus       244 -----~ri~~~~gD~f~-~----~P--~-~-D~~~l  265 (266)
                           .+++++.+|+.+ +    ++  . . |+++.
T Consensus        85 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~  120 (313)
T 3bgv_A           85 DSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSC  120 (313)
T ss_dssp             CC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEE
T ss_pred             cccccceEEEEEecccccchhhhcccCCCCEEEEEE
Confidence                 379999999987 3    42  2 3 88874

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.43  E-value=0.00015  Score=59.61  Aligned_cols=57  Identities=18%  Similarity=0.139  Sum_probs=46.3

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCC-CCCC-C-CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFV-EVPK-G-QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~-~~P~-~-D~~~l  265 (266)
                      ..+|+|||||+|.++..+++.      +++|. |..++.++.. +++++.+|+.+ +++. . |+++.
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~  108 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALM  108 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEE
Confidence            689999999999999988776      88998 5577766654 89999999877 5655 3 98875

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=97.41  E-value=0.00013  Score=59.46  Aligned_cols=60  Identities=15%  Similarity=0.214  Sum_probs=48.0

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCC-eEEEeech-HHHhhCCCC-CCceEEeccCCC-CCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQL-RGINFDLP-HVLKHAPSC-PGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l-~~~v~Dlp-~vi~~a~~~-~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ...+|+|||||+|.++..+     .. +++++|.. ..++.++.. ++++++.+|+.+ ++|.+  |++++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  101 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLL  101 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEE
Confidence            5689999999999999887     45 89999994 566665543 689999999987 66653  98875

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.41  E-value=4.9e-05  Score=64.94  Aligned_cols=66  Identities=14%  Similarity=0.078  Sum_probs=54.9

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCCC-----CCceEEeccCCCCCCC-C-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPSC-----PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~~-----~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      ..+.+|+|||||.|-++..+...+|+.+.+.+|+.+ .++.++.+     .+.++...|+..+.|. . |++++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~  204 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLL  204 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEE
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHH
Confidence            358899999999999999999999999999999964 66665542     5688999999996555 3 99864

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=97.40  E-value=0.0001  Score=62.11  Aligned_cols=67  Identities=12%  Similarity=0.275  Sum_probs=53.5

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----CCceEEeccCCC-CCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----PGVEHVGGDMFV-EVPK  259 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~ri~~~~gD~f~-~~P~  259 (266)
                      ..+++.++ .....+|+|||||+|.++..++++.  .+++++|+ |..++.++.+    ++++++.+|+.+ +++.
T Consensus        19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~   91 (245)
T 1yub_A           19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPN   91 (245)
T ss_dssp             HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCC
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCccc
Confidence            45566665 5567899999999999999999986  78999999 4577766653    579999999998 6653

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.39  E-value=0.00016  Score=59.98  Aligned_cols=67  Identities=16%  Similarity=0.205  Sum_probs=52.4

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCC------CCeEEEeec-hHHHhhCCC-----------CCCceEEeccCCCCCCC-
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYP------QLRGINFDL-PHVLKHAPS-----------CPGVEHVGGDMFVEVPK-  259 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P------~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~~~P~-  259 (266)
                      .....+|+|||||+|.++..+++..+      ..+++.+|+ |..++.++.           .++|+++.+|..+++|. 
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  161 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence            34567999999999999999999766      378999998 456665543           25899999999887665 


Q ss_pred             C--CEEEe
Q 046424          260 G--QAIFM  265 (266)
Q Consensus       260 ~--D~~~l  265 (266)
                      +  |+++.
T Consensus       162 ~~fD~I~~  169 (227)
T 1r18_A          162 APYNAIHV  169 (227)
T ss_dssp             CSEEEEEE
T ss_pred             CCccEEEE
Confidence            3  88864

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.38  E-value=6.3e-05  Score=61.44  Aligned_cols=63  Identities=13%  Similarity=0.084  Sum_probs=48.0

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------CCceEEeccCCCCCC-----C-CCEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--------PGVEHVGGDMFVEVP-----K-GQAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--------~ri~~~~gD~f~~~P-----~-~D~~~l  265 (266)
                      ..+|||+|||+|.++..++++.+ .+++.+|+. ..++.++.+        ++++++.+|+++..+     . -|++++
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            47999999999999999887754 579999995 567666531        589999999876221     2 377765

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.38  E-value=0.00018  Score=60.91  Aligned_cols=63  Identities=17%  Similarity=0.188  Sum_probs=48.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCC-CCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ...+|||||||+|.++..+++.  ..+++++|+ |..++.++....-.++.+|+.+ ++|.+  |+++.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~  120 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLA  120 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEE
Confidence            5689999999999999999987  568999999 5577666542111388899987 66654  88875

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.37  E-value=4.4e-05  Score=63.85  Aligned_cols=65  Identities=17%  Similarity=0.212  Sum_probs=50.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCC---CC-----CC-CE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVE---VP-----KG-QA  262 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~---~P-----~~-D~  262 (266)
                      +..+|||||||+|..+..+++..| +.+++.+|. |..++.++.+       ++|+++.+|..+.   +|     .. |+
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~  151 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL  151 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence            457999999999999999999988 789999999 4566665532       5799999997652   21     33 88


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      +++
T Consensus       152 V~~  154 (232)
T 3cbg_A          152 IFI  154 (232)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.34  E-value=0.00035  Score=59.86  Aligned_cols=63  Identities=13%  Similarity=0.061  Sum_probs=47.5

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC--C------CceEE--eccCCC-CCCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC--P------GVEHV--GGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~--~------ri~~~--~gD~f~-~~P~~-D~~~l  265 (266)
                      +....+|||||||+|.++..++++   -+++.+|+-+.+..+.+.  .      +|+++  .+|+++ + +.. |+++.
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~V~s  146 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-VERTDVIMC  146 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-CCCCSEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC-CCCCcEEEE
Confidence            456689999999999999998887   579999997753333221  2      68999  999987 3 333 98874

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.33  E-value=0.00023  Score=58.76  Aligned_cols=67  Identities=12%  Similarity=0.123  Sum_probs=52.2

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHC-----CCCeEEEeec-hHHHhhCCC-----------CCCceEEeccCCCCC----
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKY-----PQLRGINFDL-PHVLKHAPS-----------CPGVEHVGGDMFVEV----  257 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~-----P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~~~----  257 (266)
                      .....+|+|||||+|.++..+++..     |+.+++.+|. |..++.++.           .++++++.+|..+..    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            4456899999999999999999986     6889999999 456655543           257999999998854    


Q ss_pred             C-C-C-CEEEe
Q 046424          258 P-K-G-QAIFM  265 (266)
Q Consensus       258 P-~-~-D~~~l  265 (266)
                      + . . |+++.
T Consensus       158 ~~~~~fD~I~~  168 (227)
T 2pbf_A          158 KELGLFDAIHV  168 (227)
T ss_dssp             HHHCCEEEEEE
T ss_pred             ccCCCcCEEEE
Confidence            2 2 3 88864

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.32  E-value=0.00029  Score=64.56  Aligned_cols=71  Identities=14%  Similarity=0.281  Sum_probs=53.9

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCC-----C
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVP-----K  259 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P-----~  259 (266)
                      +++.++ ..+..+|+|+|||+|.++..+++.  ..+++++|+ |..++.|+.+      ++++++.+|+++.++     .
T Consensus       278 ~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~  354 (433)
T 1uwv_A          278 ALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAK  354 (433)
T ss_dssp             HHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGT
T ss_pred             HHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhc
Confidence            334444 445679999999999999999988  678999999 4577666532      589999999998433     2


Q ss_pred             -C-CEEEe
Q 046424          260 -G-QAIFM  265 (266)
Q Consensus       260 -~-D~~~l  265 (266)
                       . |++++
T Consensus       355 ~~fD~Vv~  362 (433)
T 1uwv_A          355 NGFDKVLL  362 (433)
T ss_dssp             TCCSEEEE
T ss_pred             CCCCEEEE
Confidence             3 98875

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.32  E-value=0.00026  Score=60.97  Aligned_cols=65  Identities=20%  Similarity=0.201  Sum_probs=49.3

Q ss_pred             CCceEEEecCCccH----HHHHHHHHCC----CCeEEEeech-HHHhhCCCC----------------------------
Q 046424          201 GLNQLVDVAGGLGA----NLKSIVSKYP----QLRGINFDLP-HVLKHAPSC----------------------------  243 (266)
Q Consensus       201 ~~~~vvDVGGG~G~----~~~~l~~~~P----~l~~~v~Dlp-~vi~~a~~~----------------------------  243 (266)
                      +..+|+|+|||+|.    .++.+++..|    +.+++..|+. .+++.|+..                            
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            34789999999999    6666777766    4689999994 477665421                            


Q ss_pred             ---------CCceEEeccCCC-CCC--CC-CEEEe
Q 046424          244 ---------PGVEHVGGDMFV-EVP--KG-QAIFM  265 (266)
Q Consensus       244 ---------~ri~~~~gD~f~-~~P--~~-D~~~l  265 (266)
                               .+|+|..+|+++ ++|  .. |+|+.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~c  219 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFC  219 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEE
Confidence                     369999999999 576  34 99874

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.25  E-value=0.00038  Score=60.46  Aligned_cols=66  Identities=15%  Similarity=0.115  Sum_probs=54.2

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------CCCceEEeccCCCC--CCC-C-CEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-----------CPGVEHVGGDMFVE--VPK-G-QAI  263 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~~--~P~-~-D~~  263 (266)
                      .++++|+=||||.|..++++++..|..+++++|+ |.|++.++.           .+|++++.+|-++-  ... . |+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            3789999999999999999999888889999999 568876543           38999999999983  333 4 988


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      ++
T Consensus       162 i~  163 (294)
T 3o4f_A          162 IS  163 (294)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.25  E-value=0.00029  Score=58.09  Aligned_cols=66  Identities=18%  Similarity=0.146  Sum_probs=51.2

Q ss_pred             CCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC-----------CCCceEEeccCCCCCC-C-C-CEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPS-----------CPGVEHVGGDMFVEVP-K-G-QAI  263 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~~~P-~-~-D~~  263 (266)
                      ....+|+|||||+|..+..+++.. |+.+++.+|+ |..++.++.           .++|+++.+|.....+ . . |++
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i  155 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI  155 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence            456899999999999999999985 7789999999 556665542           2479999999986433 2 3 887


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      +.
T Consensus       156 ~~  157 (226)
T 1i1n_A          156 HV  157 (226)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.25  E-value=0.00027  Score=60.13  Aligned_cols=66  Identities=12%  Similarity=0.080  Sum_probs=49.5

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC----CCceEEeccCCC-CCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC----PGVEHVGGDMFV-EVP  258 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~----~ri~~~~gD~f~-~~P  258 (266)
                      ..+++..+ .....+|+|||||+|.++. + ++.+..+++++|+ |..++.+++.    ++++++.+|+.+ ++|
T Consensus        11 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l-~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~   82 (252)
T 1qyr_A           11 DSIVSAIN-PQKGQAMVEIGPGLAALTE-P-VGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHC-CCTTCCEEEECCTTTTTHH-H-HHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred             HHHHHhcC-CCCcCEEEEECCCCcHHHH-h-hhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence            45566655 5566899999999999999 5 4555555999999 4577766543    589999999987 543

>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}

Probab=97.23  E-value=0.00019  Score=53.24  Aligned_cols=64  Identities=19%  Similarity=0.235  Sum_probs=55.6

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhC--CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccCCC
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQL--PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK  119 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~--~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~~~  119 (266)
                      +..|++.|.+.|  ++|+.+||+.+  ++    ++..+++-|+.|...|+|+..   +     .+.|++|+.+..++...
T Consensus        15 d~~IL~~L~~~g--~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~---~-----rg~Y~LT~~G~~~l~~~   80 (111)
T 3b73_A           15 DDRILEIIHEEG--NGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL---A-----NGVYVITEEGEAYLNGE   80 (111)
T ss_dssp             HHHHHHHHHHHS--CBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC---S-----TTCEEECHHHHHHHTTC
T ss_pred             HHHHHHHHHHcC--CCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec---C-----CceEEECchHHHHHHHH
Confidence            456888998766  99999999999  99    999999999999999999975   1     45899999998777653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.23  E-value=0.00035  Score=60.21  Aligned_cols=63  Identities=11%  Similarity=-0.029  Sum_probs=47.4

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCC--C------CceEE--eccCCCCCC-CC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSC--P------GVEHV--GGDMFVEVP-KG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~--~------ri~~~--~gD~f~~~P-~~-D~~~l  265 (266)
                      +....+|||||||+|.++..++++   -+++.+|+.+....+++.  .      +|+++  .+|+.+ +| .. |+++.
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~Vvs  154 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTK-MEPFQADTVLC  154 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CCCCCCSEEEE
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhh-CCCCCcCEEEE
Confidence            455689999999999999999888   579999997753333221  2      68999  999886 33 33 98874

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.19  E-value=0.00038  Score=59.52  Aligned_cols=50  Identities=4%  Similarity=0.019  Sum_probs=38.8

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS  242 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~  242 (266)
                      ..+++.++ .....+|+|||||+|.++..++++  ..+++++|+. ..++.+++
T Consensus        35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~   85 (261)
T 3iv6_A           35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAE   85 (261)
T ss_dssp             HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHH
Confidence            34555555 556789999999999999999987  4589999994 47776654

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.13  E-value=0.00036  Score=60.19  Aligned_cols=66  Identities=17%  Similarity=0.085  Sum_probs=51.4

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCCCCC--CCEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVEVPK--GQAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~P~--~D~~~l  265 (266)
                      ++...+|||+|||+|.+++.++++ ...+++.+|+ |..++.++.       .++|+++.+|.++-.+.  .|.++|
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~  198 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM  198 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEE
Confidence            346789999999999999999887 4568999999 456666553       27899999999884333  388776

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.11  E-value=0.00049  Score=62.05  Aligned_cols=63  Identities=11%  Similarity=0.050  Sum_probs=50.2

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-----CCceEEeccCCCC-CC-CC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFVE-VP-KG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~~-~P-~~-D~~~l  265 (266)
                      ...+|+|+|||+|.++..+++.  +.+++.+|. |..++.++.+     -.++++.+|+++. .+ .. |+|++
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~  304 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVT  304 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEE
Confidence            4579999999999999999998  568999998 5577766542     3599999999994 44 24 99885

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.10  E-value=0.00058  Score=65.35  Aligned_cols=95  Identities=14%  Similarity=0.127  Sum_probs=61.0

Q ss_pred             chhccccChhHHHHHHHHHHhcchhhHHHHHHHccC---CCCCceEEEecCCccHHHHHHH---HH-CCCCeEEEeechH
Q 046424          163 GFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKG---FEGLNQLVDVAGGLGANLKSIV---SK-YPQLRGINFDLPH  235 (266)
Q Consensus       163 ~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~---~~~~~~vvDVGGG~G~~~~~l~---~~-~P~l~~~v~Dlp~  235 (266)
                      .||.++++|-.-..|.+|+..       ++.+..+.   -.+...|+|||+|+|-+....+   ++ .-++++..++-.+
T Consensus       323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp  395 (637)
T 4gqb_A          323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP  395 (637)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred             hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            456666777555566655443       22222210   2245789999999999844333   33 2234678888766


Q ss_pred             HHhhCCC-------CCCceEEeccCCC-CCCCC-CEEE
Q 046424          236 VLKHAPS-------CPGVEHVGGDMFV-EVPKG-QAIF  264 (266)
Q Consensus       236 vi~~a~~-------~~ri~~~~gD~f~-~~P~~-D~~~  264 (266)
                      ....++.       .++|+++.||+-+ ..|+. |+++
T Consensus       396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIV  433 (637)
T 4gqb_A          396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIV  433 (637)
T ss_dssp             HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEE
T ss_pred             HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEE
Confidence            5554433       2799999999999 89987 9985

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.10  E-value=0.00044  Score=60.58  Aligned_cols=71  Identities=11%  Similarity=0.040  Sum_probs=53.7

Q ss_pred             HHccCCCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCCC------CCceEEeccCCC-C-CCCC-CE
Q 046424          194 EIYKGFEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFV-E-VPKG-QA  262 (266)
Q Consensus       194 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~-~-~P~~-D~  262 (266)
                      ..++ .....+|+|+|||+|..+..+++..+ ..+++.+|+. ..++.++.+      ++|+++.+|+.+ + .+.. |+
T Consensus       112 ~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~  190 (315)
T 1ixk_A          112 VALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK  190 (315)
T ss_dssp             HHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred             HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCE
Confidence            3344 55668999999999999999999975 5889999995 456555432      579999999987 3 2334 88


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      +++
T Consensus       191 Il~  193 (315)
T 1ixk_A          191 ILL  193 (315)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.04  E-value=0.00068  Score=59.23  Aligned_cols=64  Identities=17%  Similarity=0.140  Sum_probs=46.7

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHHhhCC--CC--CCceEEec-cCCCCCCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-----PHVLKHAP--SC--PGVEHVGG-DMFVEVPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-----p~vi~~a~--~~--~ri~~~~g-D~f~~~P~~-D~~~l  265 (266)
                      +....+|||||||+|.++..++++   -+++.+|+     +..++.+.  ..  ++|+++.+ |+++.-+.. |+++.
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~s  154 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLC  154 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEE
Confidence            445689999999999999999988   37889998     53333222  12  57999999 998732333 98874

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=96.99  E-value=0.0003  Score=60.03  Aligned_cols=65  Identities=14%  Similarity=0.157  Sum_probs=49.0

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH--------HHhhCCCC-------CCceEEeccCCCC---CC--
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH--------VLKHAPSC-------PGVEHVGGDMFVE---VP--  258 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~--------vi~~a~~~-------~ri~~~~gD~f~~---~P--  258 (266)
                      .....+|+|+|||+|.++..+++.  ..+++.+|+.+        .++.++.+       .||+++.+|..+-   ++  
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~  158 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT  158 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence            334579999999999999999986  56899999965        33434322       5799999998872   44  


Q ss_pred             -CC-CEEEe
Q 046424          259 -KG-QAIFM  265 (266)
Q Consensus       259 -~~-D~~~l  265 (266)
                       .. |++++
T Consensus       159 ~~~fD~V~~  167 (258)
T 2r6z_A          159 QGKPDIVYL  167 (258)
T ss_dssp             HCCCSEEEE
T ss_pred             CCCccEEEE
Confidence             33 98876

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=96.97  E-value=0.00041  Score=46.52  Aligned_cols=55  Identities=9%  Similarity=0.197  Sum_probs=45.9

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLT  109 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t  109 (266)
                      +..|+++|.+.+ .++|..|||+.+|+    +...+.+.+..|...|++....        .+.|+++
T Consensus        12 ~~~IL~~L~~~~-~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~~--------~G~y~lg   66 (67)
T 2heo_A           12 EQKILQVLSDDG-GPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSPS--------PKYWSIG   66 (67)
T ss_dssp             HHHHHHHHHHHC-SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEEE--------TTEEEEC
T ss_pred             HHHHHHHHHHcC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecCC--------CceEeeC
Confidence            456888997653 28999999999999    9999999999999999987652        5678764

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=96.95  E-value=0.00075  Score=58.07  Aligned_cols=55  Identities=31%  Similarity=0.439  Sum_probs=44.0

Q ss_pred             CCceEEEecCCc--cHHHHHH-HHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC
Q 046424          201 GLNQLVDVAGGL--GANLKSI-VSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV  255 (266)
Q Consensus       201 ~~~~vvDVGGG~--G~~~~~l-~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~  255 (266)
                      +..+|||||||.  +.+..++ .+.+|+.+++.+|. |.+++.++..      .+++++.+|+.+
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~  142 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLD  142 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccC
Confidence            678999999997  3344554 45689999999999 7799887642      379999999987

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=96.95  E-value=0.0004  Score=62.89  Aligned_cols=63  Identities=11%  Similarity=0.135  Sum_probs=47.6

Q ss_pred             CCceEEEecCC------ccHHHHHHHHH-CCCCeEEEeechHHHhhCCCCCCceEEeccCCC-CCC-------CC-CEEE
Q 046424          201 GLNQLVDVAGG------LGANLKSIVSK-YPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFV-EVP-------KG-QAIF  264 (266)
Q Consensus       201 ~~~~vvDVGGG------~G~~~~~l~~~-~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~-~~P-------~~-D~~~  264 (266)
                      +..+|||||||      +|..+..++++ +|+.+++++|+.+...  ...++|+++.+|+.+ +++       .. |+|+
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVi  293 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--VDELRIRTIQGDQNDAEFLDRIARRYGPFDIVI  293 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEE
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--hcCCCcEEEEecccccchhhhhhcccCCccEEE
Confidence            46899999999      66666666654 6999999999965432  234799999999988 555       33 8886


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      .
T Consensus       294 s  294 (419)
T 3sso_A          294 D  294 (419)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=96.94  E-value=0.00049  Score=47.75  Aligned_cols=62  Identities=10%  Similarity=0.044  Sum_probs=52.1

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcc-hHHHHHHHHhcCCccccccccCCCCccccceecchhccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPI-ILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKY  114 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~-~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~  114 (266)
                      .+-.|++.|...|  +.|+.+||+.+|+    +.. .+++.|..|...|+|+...    .|  ...|++|+.+..
T Consensus        12 ~~~~IL~~Lk~~g--~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~----~g--RP~w~LT~~g~~   74 (79)
T 1xmk_A           12 IKEKICDYLFNVS--DSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQG----TT--PPIWHLTDKKRE   74 (79)
T ss_dssp             HHHHHHHHHHHTC--CEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEEC----SS--SCEEEECHHHHT
T ss_pred             HHHHHHHHHHHcC--CcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecC----CC--CCCeEeCHhHHh
Confidence            3556788898887  9999999999999    998 9999999999999998651    23  348999988764

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=96.89  E-value=0.0024  Score=53.50  Aligned_cols=75  Identities=13%  Similarity=0.167  Sum_probs=54.4

Q ss_pred             HHHHHccC--CCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeechH-H----HhhCCCCCCceEEeccCCCC-----C
Q 046424          191 EILEIYKG--FEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDLPH-V----LKHAPSCPGVEHVGGDMFVE-----V  257 (266)
Q Consensus       191 ~i~~~~~~--~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dlp~-v----i~~a~~~~ri~~~~gD~f~~-----~  257 (266)
                      .++..++.  ++...+|+|||||+|.++..+++. .|+-+++.+|+.+ .    ++.++...+|+++.+|...+     +
T Consensus        64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~  143 (232)
T 3id6_C           64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSV  143 (232)
T ss_dssp             HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTT
T ss_pred             HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhcc
Confidence            34444431  456789999999999999999987 5788999999954 2    33444447899999998763     2


Q ss_pred             CCC-CEEEe
Q 046424          258 PKG-QAIFM  265 (266)
Q Consensus       258 P~~-D~~~l  265 (266)
                      +.. |+++.
T Consensus       144 ~~~~D~I~~  152 (232)
T 3id6_C          144 VENVDVLYV  152 (232)
T ss_dssp             CCCEEEEEE
T ss_pred             ccceEEEEe
Confidence            233 88874

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.87  E-value=0.00064  Score=60.17  Aligned_cols=65  Identities=11%  Similarity=0.123  Sum_probs=51.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCC-----CeEEEeec-hHHHhhCCCC-----CCceEEeccCCCCCCC-C-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQ-----LRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~-----l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      ...+|+|+|||+|.++..+++..|.     .+++++|+ |..++.++.+     -+++++.+|.+++.+. . |+++.
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~  207 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS  207 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEE
Confidence            4579999999999999999999875     67899999 4566655432     3689999999986553 3 88764

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=96.86  E-value=0.0015  Score=59.65  Aligned_cols=62  Identities=15%  Similarity=0.143  Sum_probs=49.7

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC------CCceEEeccCCCCCCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC------PGVEHVGGDMFVEVPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~~~P~~-D~~~l  265 (266)
                      +..+|+|+|||+|.++..+++.  ..+++.+|+. ..++.++.+      + ++++.+|+++..+.. |++++
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~  359 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIV  359 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEE
T ss_pred             CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEE
Confidence            5689999999999999999987  4589999994 577766542      4 999999999855544 88875

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.84  E-value=0.00067  Score=58.10  Aligned_cols=67  Identities=10%  Similarity=0.047  Sum_probs=51.8

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeech-HHHhhCCC------CCCceEEeccCCC-CC-----CCC-CEE
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-EV-----PKG-QAI  263 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~~-----P~~-D~~  263 (266)
                      .....+|+|+|||+|..+..+++..++ .+++.+|+. ..++.++.      .++|+++.+|+.+ +.     +.. |++
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            445689999999999999999999887 889999995 45555443      2589999999876 22     334 887


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      ++
T Consensus       161 l~  162 (274)
T 3ajd_A          161 LL  162 (274)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=96.82  E-value=0.00097  Score=47.70  Aligned_cols=61  Identities=18%  Similarity=0.201  Sum_probs=50.9

Q ss_pred             HHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424           36 TIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK  113 (266)
Q Consensus        36 ~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~  113 (266)
                      ++..-.++.|+..| . +  +.++.|||+.+++    +...+.+.|+.|...|++...         .+.|++++.+.
T Consensus        27 ~l~~~~r~~Il~~L-~-~--~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---------~g~y~l~~~g~   87 (96)
T 1y0u_A           27 AVTNPVRRKILRML-D-K--GRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---------GERWVVTDAGK   87 (96)
T ss_dssp             HHSCHHHHHHHHHH-H-T--TCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECTTTC
T ss_pred             HhCCHHHHHHHHHH-c-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---------CCEEEECCCch
Confidence            34444667788889 5 4  8999999999999    999999999999999999976         24899988654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=96.82  E-value=0.0034  Score=52.63  Aligned_cols=65  Identities=11%  Similarity=0.113  Sum_probs=50.3

Q ss_pred             HHHHHccC--CCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeech-HHHhh----CCCCCCceEEeccCCC
Q 046424          191 EILEIYKG--FEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDLP-HVLKH----APSCPGVEHVGGDMFV  255 (266)
Q Consensus       191 ~i~~~~~~--~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dlp-~vi~~----a~~~~ri~~~~gD~f~  255 (266)
                      .++..++.  .+...+|+|+|||+|.++..+++. -|+=+++.+|.. +.++.    ++..+.|..+.+|.-.
T Consensus        65 ~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~  137 (233)
T 4df3_A           65 ALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARF  137 (233)
T ss_dssp             HHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTC
T ss_pred             HHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccC
Confidence            44554442  567799999999999999999998 598899999994 45544    4445789999888876

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=96.82  E-value=0.0019  Score=55.37  Aligned_cols=64  Identities=14%  Similarity=0.131  Sum_probs=45.0

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHhhCCC---------C-------CCceEEeccCCC---CC--
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL--PHVLKHAPS---------C-------PGVEHVGGDMFV---EV--  257 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl--p~vi~~a~~---------~-------~ri~~~~gD~f~---~~--  257 (266)
                      ...+|+|||||+|.++..+++.. ..+++++|+  |..++.++.         .       ++|++...|.-+   ++  
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            45799999999999999888763 348999999  566665432         1       378888665543   22  


Q ss_pred             ---CCC-CEEEe
Q 046424          258 ---PKG-QAIFM  265 (266)
Q Consensus       258 ---P~~-D~~~l  265 (266)
                         +.. |++++
T Consensus       158 ~~~~~~fD~Ii~  169 (281)
T 3bzb_A          158 CTGLQRFQVVLL  169 (281)
T ss_dssp             HHSCSSBSEEEE
T ss_pred             hccCCCCCEEEE
Confidence               233 88874

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=96.80  E-value=0.00086  Score=59.28  Aligned_cols=62  Identities=15%  Similarity=0.139  Sum_probs=49.7

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCCCCC-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEVPKG-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~P~~-D~~~l  265 (266)
                      ....+|+|+|||+|.++.. ++  ...+++.+|+ |..++.++.+       ++++++.+|.++.. .. |++++
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-~~fD~Vi~  264 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-VKGNRVIM  264 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-CCEEEEEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-CCCcEEEE
Confidence            3568999999999999999 76  5778999999 5677766542       58999999999854 43 88876

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=96.78  E-value=0.00034  Score=58.78  Aligned_cols=40  Identities=15%  Similarity=-0.034  Sum_probs=32.8

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAP  241 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~  241 (266)
                      ...+|||||||+|.++..+++..+ .+++++|+. ..++.++
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~   96 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQ   96 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHH
Confidence            458999999999999999998877 678999994 4566553

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=96.74  E-value=0.0021  Score=59.08  Aligned_cols=72  Identities=13%  Similarity=0.104  Sum_probs=54.6

Q ss_pred             HHHccCCCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeechH-HHhhCCC------CCCceEEeccCCC-C--CC-CC
Q 046424          193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDLPH-VLKHAPS------CPGVEHVGGDMFV-E--VP-KG  260 (266)
Q Consensus       193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp~-vi~~a~~------~~ri~~~~gD~f~-~--~P-~~  260 (266)
                      ...++ .....+|+|+|||.|..+..+++..++ .+++.+|+.+ .++.++.      .++|+++.+|+.+ +  ++ ..
T Consensus       252 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~  330 (450)
T 2yxl_A          252 SIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEV  330 (450)
T ss_dssp             HHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSC
T ss_pred             HHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCC
Confidence            33344 555689999999999999999999987 8899999954 4554432      2579999999987 3  55 33


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++++
T Consensus       331 fD~Vl~  336 (450)
T 2yxl_A          331 ADKVLL  336 (450)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence             98875

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=96.70  E-value=0.00065  Score=60.05  Aligned_cols=63  Identities=10%  Similarity=0.050  Sum_probs=49.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------C-CceEEeccCCCCC------CCC-CEEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------P-GVEHVGGDMFVEV------PKG-QAIF  264 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~-ri~~~~gD~f~~~------P~~-D~~~  264 (266)
                      ...+|||+|||+|.++..+++...  +++.+|+ |..++.++.+       + +++++.+|+++..      ... |+++
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            457999999999999999999754  8999999 4577666542       2 5999999998732      233 9887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       231 ~  231 (332)
T 2igt_A          231 T  231 (332)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=96.66  E-value=0.0013  Score=55.99  Aligned_cols=72  Identities=15%  Similarity=0.236  Sum_probs=52.0

Q ss_pred             HHHHHccCCCCC--ceEEEecCCccHHHHHHHHHCCCCeEEEeechHH--------HhhCC----C---C-CCceEEecc
Q 046424          191 EILEIYKGFEGL--NQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHV--------LKHAP----S---C-PGVEHVGGD  252 (266)
Q Consensus       191 ~i~~~~~~~~~~--~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~v--------i~~a~----~---~-~ri~~~~gD  252 (266)
                      .+.+.+. .+..  .+|+|+|||.|..+..++++  ..+++.+|..+.        ++.++    .   . .||+++.+|
T Consensus        77 ~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D  153 (258)
T 2oyr_A           77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (258)
T ss_dssp             HHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred             HHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence            3444443 4444  79999999999999999998  568999999763        32221    1   1 479999999


Q ss_pred             CCC---CCCCC-CEEEe
Q 046424          253 MFV---EVPKG-QAIFM  265 (266)
Q Consensus       253 ~f~---~~P~~-D~~~l  265 (266)
                      .++   .++.. |++++
T Consensus       154 ~~~~L~~~~~~fDvV~l  170 (258)
T 2oyr_A          154 SLTALTDITPRPQVVYL  170 (258)
T ss_dssp             HHHHSTTCSSCCSEEEE
T ss_pred             HHHHHHhCcccCCEEEE
Confidence            876   34444 99886

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=96.64  E-value=0.00085  Score=63.61  Aligned_cols=63  Identities=13%  Similarity=0.061  Sum_probs=47.6

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----C--CCceEEeccCCC---CCCC-C-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----C--PGVEHVGGDMFV---EVPK-G-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~--~ri~~~~gD~f~---~~P~-~-D~~~  264 (266)
                      .+..+|||||||.|.++..+++.  ..+++++|+. ..|+.|+.    .  -.|++..+|.-+   +.+. . |+|+
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~  139 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAI  139 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEE
Confidence            35679999999999999999998  6689999995 46776553    2  258888887754   3333 3 8885

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.50  E-value=0.0027  Score=61.69  Aligned_cols=75  Identities=16%  Similarity=0.057  Sum_probs=55.9

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHH------------------------------------------CCCCe
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSK------------------------------------------YPQLR  227 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~------------------------------------------~P~l~  227 (266)
                      ..++.... |.....|+|.+||+|.++++.+..                                          .|+.+
T Consensus       180 a~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~  258 (703)
T 3v97_A          180 AAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH  258 (703)
T ss_dssp             HHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence            34555555 777789999999999999998765                                          34568


Q ss_pred             EEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCC--C-C-CEEEe
Q 046424          228 GINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVP--K-G-QAIFM  265 (266)
Q Consensus       228 ~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P--~-~-D~~~l  265 (266)
                      ++++|+ |.+++.|+.+       ++|++..+|+++ ..|  . . |+++.
T Consensus       259 i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~  309 (703)
T 3v97_A          259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLS  309 (703)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEe
Confidence            999999 5577776642       469999999987 333  2 3 88764

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=96.38  E-value=0.0013  Score=59.73  Aligned_cols=63  Identities=25%  Similarity=0.370  Sum_probs=48.5

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------CCceEEeccCCCCCC----CC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--------PGVEHVGGDMFVEVP----KG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--------~ri~~~~gD~f~~~P----~~-D~~~l  265 (266)
                      ...+|+|+|||+|..+..+++..  .+++.+|+. ..++.++.+        ++|+++.+|+++.++    .. |++++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence            35899999999999999988874  589999995 455555431        579999999997422    23 99886

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=96.31  E-value=0.0032  Score=60.61  Aligned_cols=95  Identities=9%  Similarity=0.057  Sum_probs=57.3

Q ss_pred             chhccccChhHHHHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHH----C---------CCCeEE
Q 046424          163 GFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSK----Y---------PQLRGI  229 (266)
Q Consensus       163 ~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~----~---------P~l~~~  229 (266)
                      .||.+.+++-.-..|.+++...       +.+..++-.+...|+|||||+|.+....+++    .         ...+++
T Consensus       378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy  450 (745)
T 3ua3_A          378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY  450 (745)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred             HHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence            4555666665555565555441       1222211123578999999999996543222    2         345788


Q ss_pred             EeechH-HHhhCC-----C-CCCceEEeccCCC-CC------CCC-CEEE
Q 046424          230 NFDLPH-VLKHAP-----S-CPGVEHVGGDMFV-EV------PKG-QAIF  264 (266)
Q Consensus       230 v~Dlp~-vi~~a~-----~-~~ri~~~~gD~f~-~~------P~~-D~~~  264 (266)
                      .+|-.. .+...+     . .++|+++.+|+-+ ..      |.. |+++
T Consensus       451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIV  500 (745)
T 3ua3_A          451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIV  500 (745)
T ss_dssp             EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEE
T ss_pred             EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEE
Confidence            888854 222211     1 2789999999998 66      554 9885

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=96.29  E-value=0.0063  Score=52.34  Aligned_cols=64  Identities=22%  Similarity=0.291  Sum_probs=51.1

Q ss_pred             HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC--CCCceEEeccCCC
Q 046424          189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS--CPGVEHVGGDMFV  255 (266)
Q Consensus       189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~--~~ri~~~~gD~f~  255 (266)
                      ...+++.+. ......+||++||.|..+..|+++  +.+.+++|.. ..++.+++  .+|++++.+||-+
T Consensus        11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~   77 (285)
T 1wg8_A           11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH   77 (285)
T ss_dssp             HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred             HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence            356677776 666789999999999999999998  7899999995 46654432  1699999999976

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=96.28  E-value=0.0027  Score=47.58  Aligned_cols=65  Identities=18%  Similarity=0.219  Sum_probs=49.5

Q ss_pred             HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      .+|.--.++.|+..|...+  +.|+.|||+.+|+    +...+.+.|+.|...|++...+    +|+ ...|++++
T Consensus        37 ~al~~~~rl~IL~~L~~~~--~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~----~gr-~~~y~l~~  101 (122)
T 1u2w_A           37 KAIADENRAKITYALCQDE--ELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRK----EGK-LALYSLGD  101 (122)
T ss_dssp             HHHHSHHHHHHHHHHHHSS--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---------CCEEEESC
T ss_pred             HHhCCHHHHHHHHHHHHCC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE----ECC-EEEEEECH
Confidence            3444445678888897655  8999999999999    9999999999999999998762    121 23577765

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=96.27  E-value=0.0039  Score=43.36  Aligned_cols=67  Identities=16%  Similarity=0.262  Sum_probs=48.9

Q ss_pred             HHhhChhHHHhhcCC-CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           40 ATELGLLEIMAKASP-TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        40 a~~lglfd~L~~~g~-~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      -.+..|++.|.+.++ .++|+.+||+++|+    +...+.+.|.-|...|++....     +. .+.|.+.+....+.
T Consensus        10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g-----~~-~~~W~i~~~~~~~~   77 (81)
T 1qbj_A           10 DQEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA-----GT-PPLWKIAVSTQAWN   77 (81)
T ss_dssp             HHHHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES-----SS-SCEEEEC-------
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-----CC-CCeeEEeCcHHhcc
Confidence            346668888887742 26999999999999    9999999999999999998752     11 57888887655433

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=96.26  E-value=0.0035  Score=57.48  Aligned_cols=73  Identities=18%  Similarity=0.069  Sum_probs=52.2

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHhhCCCC------C--CceEE
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-------------PQLRGINFDL-PHVLKHAPSC------P--GVEHV  249 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-------------P~l~~~v~Dl-p~vi~~a~~~------~--ri~~~  249 (266)
                      +++.+. .....+|+|.|||+|.++..+++..             +..+++++|+ |..++.++.+      .  .+++.
T Consensus       163 mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~  241 (445)
T 2okc_A          163 MVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIV  241 (445)
T ss_dssp             HHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEE
T ss_pred             HHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEe
Confidence            344443 3345799999999999999988764             5578999999 4566555431      2  67899


Q ss_pred             eccCCC-CCCCC-CEEEe
Q 046424          250 GGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       250 ~gD~f~-~~P~~-D~~~l  265 (266)
                      .+|.+. +.... |+++.
T Consensus       242 ~gD~l~~~~~~~fD~Iv~  259 (445)
T 2okc_A          242 CEDSLEKEPSTLVDVILA  259 (445)
T ss_dssp             ECCTTTSCCSSCEEEEEE
T ss_pred             eCCCCCCcccCCcCEEEE
Confidence            999998 34334 88864

>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A

Probab=96.26  E-value=0.0063  Score=46.17  Aligned_cols=69  Identities=13%  Similarity=0.169  Sum_probs=47.1

Q ss_pred             HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ..++.|+..|...|  ++|..+||+.+++    ++..+.++++-|...|+|+... ...|++ .-.+.+|+.|..+.
T Consensus        37 ~~~~~vL~~l~~~~--~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~-~~~DrR-~~~~~LT~~G~~~~  105 (142)
T 3ech_A           37 PPDVHVLKLIDEQR--GLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRER-NPSDQR-SFQLFLTDEGLAIH  105 (142)
T ss_dssp             HHHHHHHHHHHHTT--TCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC------------CCEECHHHHHHH
T ss_pred             HHHHHHHHHHHhCC--CcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeecc-CCCCCC-eeeeEECHHHHHHH
Confidence            46667888998876  8999999999999    9999999999999999999762 111111 22366776665444

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=96.26  E-value=0.0032  Score=54.75  Aligned_cols=51  Identities=10%  Similarity=0.079  Sum_probs=37.8

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----C-------CceEEeccC
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----P-------GVEHVGGDM  253 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~-------ri~~~~gD~  253 (266)
                      ..+|||||||+|..+..+++.. ..+++++|+. ..++.|+..     .       ++++...|+
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~  112 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETI  112 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCT
T ss_pred             CCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhc
Confidence            5799999999998777766543 4579999995 477776642     1       256778877

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.24  E-value=0.0049  Score=56.18  Aligned_cols=72  Identities=13%  Similarity=0.157  Sum_probs=53.7

Q ss_pred             HHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEEeccCCCC---CCC-C-C
Q 046424          193 LEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----PGVEHVGGDMFVE---VPK-G-Q  261 (266)
Q Consensus       193 ~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gD~f~~---~P~-~-D  261 (266)
                      ...++ .....+|+|+|||.|..+..+++..|+.+++.+|+. ..++.++.+     -+++++.+|+.+.   ++. . |
T Consensus       239 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD  317 (429)
T 1sqg_A          239 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD  317 (429)
T ss_dssp             HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEE
T ss_pred             HHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCC
Confidence            33344 445679999999999999999999999899999994 345444321     2589999999873   443 3 8


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      ++++
T Consensus       318 ~Vl~  321 (429)
T 1sqg_A          318 RILL  321 (429)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=96.24  E-value=0.0022  Score=45.88  Aligned_cols=63  Identities=19%  Similarity=0.311  Sum_probs=49.6

Q ss_pred             HHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           36 TIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        36 ~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +|.--.++.|+..|.+ |  +.|+.|||+.+|+    +...+.+.|+.|...|+++...    +|+ .-.|++++
T Consensus        19 ~l~~~~r~~Il~~L~~-~--~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~----~g~-~~~y~l~~   81 (98)
T 3jth_A           19 AMANERRLQILCMLHN-Q--ELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRK----EAQ-TVYYTLKS   81 (98)
T ss_dssp             HHCSHHHHHHHHHTTT-S--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CTT-CCEEEECC
T ss_pred             HcCCHHHHHHHHHHhc-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE----eCC-EEEEEECH
Confidence            3444466778888877 5  8999999999999    9999999999999999999762    221 34476665

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=96.24  E-value=0.001  Score=59.99  Aligned_cols=65  Identities=11%  Similarity=-0.018  Sum_probs=49.4

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------C--CceEEeccCCCCCC------CC-CEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------P--GVEHVGGDMFVEVP------KG-QAI  263 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~--ri~~~~gD~f~~~P------~~-D~~  263 (266)
                      ....+|+|+|||+|.++..+++.. .-+++.+|+ |..++.++.+      +  +++++.+|.++.++      .. |++
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I  289 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  289 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence            355899999999999999999863 237999999 4577665542      3  89999999987322      23 888


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      ++
T Consensus       290 i~  291 (385)
T 2b78_A          290 II  291 (385)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=96.22  E-value=0.0025  Score=45.29  Aligned_cols=62  Identities=13%  Similarity=0.179  Sum_probs=48.6

Q ss_pred             HHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchh
Q 046424           39 SATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPV  111 (266)
Q Consensus        39 ~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~  111 (266)
                      .-.++.|+..|...+  +.|..|||+.+|+    ++..+.+.|+.|...|++....    +|+ ...|.+|+.
T Consensus        23 ~~~~~~il~~l~~~~--~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~----~~r-~~~y~l~~~   84 (99)
T 3cuo_A           23 HPKRLLILCMLSGSP--GTSAGELTRITGL----SASATSQHLARMRDEGLIDSQR----DAQ-RILYSIKNE   84 (99)
T ss_dssp             SHHHHHHHHHHTTCC--SEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEE----CSS-CEEEEECCH
T ss_pred             ChHHHHHHHHHHhCC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEe----cCC-EEEEEEChH
Confidence            345667888887755  8999999999999    9999999999999999999762    121 344666653

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28

Probab=96.22  E-value=0.0029  Score=44.99  Aligned_cols=71  Identities=18%  Similarity=0.244  Sum_probs=53.7

Q ss_pred             HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424           35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK  113 (266)
Q Consensus        35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~  113 (266)
                      .++..-.++.|+..|...+  +.|..+||+.+++    ++..+.+.|+.|...|+++.... ..+++ ...|.+|+.+.
T Consensus        11 ~~l~~~~~~~iL~~L~~~~--~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~-~~~~r-~~~~~lt~~g~   81 (100)
T 1ub9_A           11 HILGNPVRLGIMIFLLPRR--KAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKV-IADRP-RTVVEITDFGM   81 (100)
T ss_dssp             HHHHSHHHHHHHHHHHHHS--EEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEE-CSSSC-EEEEEECHHHH
T ss_pred             cccCChHHHHHHHHHHhcC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEec-CCCcc-eEEEEECHHHH
Confidence            4555566788888887655  8999999999999    99999999999999999996420 01111 34578887664

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=96.20  E-value=0.0028  Score=46.40  Aligned_cols=60  Identities=18%  Similarity=0.259  Sum_probs=46.7

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS  112 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s  112 (266)
                      .++.|+..|. .|  +.|+.|||+.+|+    ++..+.+.|+.|...|++....    +|+ ...|.+|+.+
T Consensus        22 ~r~~IL~~L~-~~--~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~----~gr-~~~y~l~~~~   81 (114)
T 2oqg_A           22 TRWEILTELG-RA--DQSASSLATRLPV----SRQAIAKHLNALQACGLVESVK----VGR-EIRYRALGAE   81 (114)
T ss_dssp             HHHHHHHHHH-HS--CBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEECSHH
T ss_pred             HHHHHHHHHH-cC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEe----cCC-EEEEEechHH
Confidence            4566778884 45  8999999999999    9999999999999999998752    111 3347777644

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=96.19  E-value=0.0089  Score=49.88  Aligned_cols=47  Identities=13%  Similarity=0.184  Sum_probs=34.3

Q ss_pred             HHHHHccCCC-CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhh
Q 046424          191 EILEIYKGFE-GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKH  239 (266)
Q Consensus       191 ~i~~~~~~~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~  239 (266)
                      ..++.+. .. ...+|+|||||+|.++..++++ ...+++.+|+. ..++.
T Consensus        27 ~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~   75 (232)
T 3opn_A           27 KALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAW   75 (232)
T ss_dssp             HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCH
T ss_pred             HHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHH
Confidence            3445554 32 3569999999999999999988 33489999995 34443

>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A

Probab=96.19  E-value=0.0046  Score=44.49  Aligned_cols=63  Identities=21%  Similarity=0.269  Sum_probs=48.9

Q ss_pred             HHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           36 TIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        36 ~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +|.--.++.|+..|.+ |  +.++.|||+.+|+    ++..+.+.|+.|...|+|...+    +|+ .-.|++|+
T Consensus        19 ~l~~~~r~~Il~~L~~-~--~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~----~g~-~~~y~l~~   81 (102)
T 3pqk_A           19 TLSHPVRLMLVCTLVE-G--EFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRR----NIK-QIFYRLTE   81 (102)
T ss_dssp             HHCSHHHHHHHHHHHT-C--CBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEEC----SSS-CCEEEECS
T ss_pred             HcCCHHHHHHHHHHHh-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE----eCC-EEEEEECc
Confidence            3344466677888865 4  8999999999999    8999999999999999999762    221 34577765

>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}

Probab=96.16  E-value=0.0025  Score=54.71  Aligned_cols=59  Identities=15%  Similarity=0.271  Sum_probs=48.1

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK  113 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~  113 (266)
                      -+.|+++|.+.+ .++|+.|||+.+|+    +..-+.|+|..|...|+|..+.        +++|++++...
T Consensus        32 al~IL~~l~~~~-~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~~--------~~~Y~LG~~~~   90 (275)
T 3mq0_A           32 AVRILDLVAGSP-RDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARSA--------DGTLRIGPHSL   90 (275)
T ss_dssp             HHHHHHHHHHCS-SCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEECT--------TSEEEECTHHH
T ss_pred             HHHHHHHHhhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC--------CCcEEehHHHH
Confidence            356899998764 37999999999999    8889999999999999999862        56899987543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=96.16  E-value=0.0013  Score=59.24  Aligned_cols=64  Identities=16%  Similarity=0.168  Sum_probs=49.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCCC------CCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVEV------PKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~~------P~~-D~~~l  265 (266)
                      ...+|+|+|||+|.++..+++. +..+++.+|+ |..++.++.+       ++++++.+|.++..      +.. |++++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            5689999999999999999987 4458999999 5567665542       28999999998732      234 88876

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.13  E-value=0.0012  Score=59.37  Aligned_cols=63  Identities=13%  Similarity=0.087  Sum_probs=49.8

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCC------CCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEV------PKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~------P~~-D~~~l  265 (266)
                      ...+|+|+|||+|.++..+++.  ..+++.+|+ |..++.++.+      +.++++.+|.++..      +.. |++++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  285 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence            5679999999999999999998  567899999 5677766542      45999999998732      334 88876

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=96.11  E-value=0.0044  Score=55.97  Aligned_cols=52  Identities=17%  Similarity=0.164  Sum_probs=40.4

Q ss_pred             HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC
Q 046424          189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC  243 (266)
Q Consensus       189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~  243 (266)
                      ...+++.+. .....+|||||||+|.++..++++.  .+++++|+. ..++.++..
T Consensus        96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A           96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTT
T ss_pred             HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHc
Confidence            345566665 5567899999999999999999874  489999995 467766653

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=96.10  E-value=0.0071  Score=54.04  Aligned_cols=64  Identities=14%  Similarity=0.063  Sum_probs=50.4

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEEeccCCCCCCC-C--CEEE
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPK-G--QAIF  264 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~~~P~-~--D~~~  264 (266)
                      +....++||+|++.|.+...++++  ..+++.+|.-+.-+.+...++|+++.+|.|+..|. +  |+++
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vv  275 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMV  275 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEE
Confidence            346789999999999999999998  67999999755444444468999999999995443 3  6654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=96.06  E-value=0.0017  Score=55.57  Aligned_cols=39  Identities=10%  Similarity=-0.049  Sum_probs=28.5

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHA  240 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a  240 (266)
                      ...+|||||||+|.+ ..++...+..+++++|+. ..++.+
T Consensus        71 ~~~~vLDiGcG~G~~-~~l~~~~~~~~v~gvD~s~~~l~~a  110 (289)
T 2g72_A           71 SGRTLIDIGSGPTVY-QLLSACSHFEDITMTDFLEVNRQEL  110 (289)
T ss_dssp             CCSEEEEETCTTCCG-GGTTGGGGCSEEEEECSCHHHHHHH
T ss_pred             CCCeEEEECCCcChH-HHHhhccCCCeEEEeCCCHHHHHHH
Confidence            457999999999994 444545556689999995 455543

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=96.04  E-value=0.0041  Score=46.19  Aligned_cols=65  Identities=14%  Similarity=0.222  Sum_probs=51.0

Q ss_pred             HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchh
Q 046424           35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPV  111 (266)
Q Consensus        35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~  111 (266)
                      .+|.--.++.|+..|.. |  +.++.|||+.+|+    +...+.+.|+.|...|+|....    +|+ .-.|++++.
T Consensus        13 ~al~~~~R~~Il~~L~~-~--~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~----~gr-~~~y~l~~~   77 (118)
T 3f6o_A           13 QALADPTRRAVLGRLSR-G--PATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHK----QGR-VRTCAIEKE   77 (118)
T ss_dssp             HHHTSHHHHHHHHHHHT-C--CEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEECSH
T ss_pred             HHhCCHHHHHHHHHHHh-C--CCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEe----cCC-EEEEEECHH
Confidence            34445577788888875 4  8999999999999    9999999999999999998763    111 345777763

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=96.00  E-value=0.0065  Score=52.11  Aligned_cols=41  Identities=12%  Similarity=0.212  Sum_probs=30.1

Q ss_pred             CCceEEEecCCccHHH----HHHHHHCCCCeE--EEeech-HHHhhCC
Q 046424          201 GLNQLVDVAGGLGANL----KSIVSKYPQLRG--INFDLP-HVLKHAP  241 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~----~~l~~~~P~l~~--~v~Dlp-~vi~~a~  241 (266)
                      ...+|||||||+|.++    ..++.++|+.++  +++|.. ..++.++
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~   99 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYK   99 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHH
Confidence            3569999999999754    455677898864  999984 4565443

>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A

Probab=95.94  E-value=0.0044  Score=44.43  Aligned_cols=48  Identities=13%  Similarity=0.181  Sum_probs=43.9

Q ss_pred             CCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           57 LSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        57 ~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      .+..+||..+|+    +++.+++.++.|...|+++..         .+.|.+|+.|..++.
T Consensus        21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~---------~~~~~LT~kG~~~l~   68 (95)
T 1r7j_A           21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE---------GKQYMLTKKGEELLE   68 (95)
T ss_dssp             BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHHH
T ss_pred             CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE---------CCeeEEChhHHHHHH
Confidence            889999999999    999999999999999999987         456999999987664

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=95.91  E-value=0.0012  Score=55.90  Aligned_cols=39  Identities=10%  Similarity=-0.057  Sum_probs=27.8

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHA  240 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a  240 (266)
                      ...+|||||||+|.++..+++..- -+++++|+. ..++.+
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a   94 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREEL   94 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHH
Confidence            457999999999988766554432 258999995 355543

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=95.90  E-value=0.0068  Score=41.80  Aligned_cols=43  Identities=19%  Similarity=0.287  Sum_probs=40.1

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      |.+.|.+.|  .+++.|||+.+++    ++.-++|.|..|...|++.+.
T Consensus         7 Il~~L~~~g--~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~   49 (78)
T 1xn7_A            7 VRDLLALRG--RMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI   49 (78)
T ss_dssp             HHHHHHHSC--SBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHcC--CCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            678888877  9999999999999    999999999999999999876

>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48

Probab=95.87  E-value=0.0053  Score=43.82  Aligned_cols=64  Identities=14%  Similarity=0.213  Sum_probs=50.2

Q ss_pred             hhChhHHHhhcCCCCCCHHHH----HhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEI----ASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~el----A~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++.|+..|...+  +.|..+|    |+.+++    ++..+.++++-|...|+++....    .+ ...|.+|+.|..+.
T Consensus        10 q~~iL~~l~~~~--~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~----~r-~~~~~LT~~G~~~~   77 (99)
T 1tbx_A           10 EAIVLAYLYDNE--GIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQE----RG-EKRLYLTEKGKLFA   77 (99)
T ss_dssp             HHHHHHHHTTCT--TCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEE----TT-EEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcC--CcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEec----CC-ceEEEECHHHHHHH
Confidence            445677777665  8999999    999999    99999999999999999997521    10 45678888776555

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=95.87  E-value=0.0064  Score=42.82  Aligned_cols=44  Identities=14%  Similarity=0.295  Sum_probs=40.6

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .|.+.|.+.|  .+++.|||+.+++    ++.-++|.|..|...|++.+.
T Consensus         6 ~Il~~L~~~g--~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~   49 (87)
T 2k02_A            6 EVRDMLALQG--RMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI   49 (87)
T ss_dssp             HHHHHHHHSC--SEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred             HHHHHHHHcC--CCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            3678888877  9999999999999    999999999999999999986

>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69

Probab=95.85  E-value=0.0078  Score=43.84  Aligned_cols=63  Identities=16%  Similarity=0.219  Sum_probs=47.1

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      |+..|.. |  +.+..||++.+ ++    ++..+.+.|+-|...|+|+.... ..+++ .-.|.+|+.+..+.
T Consensus        19 IL~~L~~-~--~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~-~~d~r-~~~y~LT~~G~~l~   82 (107)
T 2hzt_A           19 ILXHLTH-G--KKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVY-NQVPP-KVEYELSEYGRSLE   82 (107)
T ss_dssp             HHHHHTT-C--CBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEE-CSSSC-EEEEEECTTGGGGH
T ss_pred             HHHHHHh-C--CCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeec-CCCCC-eEEEEECccHHHHH
Confidence            4445543 4  89999999999 99    99999999999999999997631 11111 34589998776544

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=95.84  E-value=0.015  Score=45.04  Aligned_cols=55  Identities=16%  Similarity=0.084  Sum_probs=40.8

Q ss_pred             CCCceEEEecCCccH-HHHHHHHHCCCCeEEEeech-HHHhhCCCCCCceEEeccCCCCCCC---C-CEEE
Q 046424          200 EGLNQLVDVAGGLGA-NLKSIVSKYPQLRGINFDLP-HVLKHAPSCPGVEHVGGDMFVEVPK---G-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~-~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~~ri~~~~gD~f~~~P~---~-D~~~  264 (266)
                      ....++||||||.|. .+..|++. -+..+++.|+. ..++         ++..|+|++.+.   + |+++
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIY   94 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIY   94 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEE
Confidence            355799999999995 77777763 46778999973 3332         888999997662   4 8773

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=95.81  E-value=0.0022  Score=57.85  Aligned_cols=64  Identities=17%  Similarity=0.114  Sum_probs=49.4

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------C-C-CceEEeccCCCCCC------CC-CEEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------C-P-GVEHVGGDMFVEVP------KG-QAIF  264 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~-~-ri~~~~gD~f~~~P------~~-D~~~  264 (266)
                      ...+|+|+|||+|.++..+++.. ..+++.+|+. ..++.++.      . + +++++.+|.++..+      .. |+++
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            56899999999999999999875 4579999994 56666543      1 2 78999999987322      34 8887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       299 ~  299 (396)
T 3c0k_A          299 M  299 (396)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=95.79  E-value=0.0041  Score=55.58  Aligned_cols=51  Identities=12%  Similarity=0.102  Sum_probs=41.2

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCC
Q 046424          203 NQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV  255 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~  255 (266)
                      .+|+|+|||+|.++..+++..  -+++.+|.. ..++.++.      .++++++.+|.++
T Consensus       215 ~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~  272 (369)
T 3bt7_A          215 GDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE  272 (369)
T ss_dssp             SEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHH
T ss_pred             CEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence            679999999999999988754  478999984 56666553      2689999999876

>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0

Probab=95.79  E-value=0.0054  Score=45.13  Aligned_cols=75  Identities=13%  Similarity=0.129  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCC--HHHHHhhC-CCCCCCCcchHHHHHHHHhcCCcccccccc
Q 046424           20 DFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLS--SSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVS   96 (266)
Q Consensus        20 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t--~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~   96 (266)
                      +...+++.+.+.|....         +..|.. |  +.+  +.||++.+ |+    ++..+.+.|+.|...|+|+.... 
T Consensus        16 ~~~~~l~~l~~~wrl~I---------L~~L~~-g--~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~-   78 (111)
T 3df8_A           16 PSESVLHLLGKKYTMLI---------ISVLGN-G--STRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG-   78 (111)
T ss_dssp             TTSSTHHHHHSTTHHHH---------HHHHTS-S--SSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES-
T ss_pred             HHHHHHHHHcCccHHHH---------HHHHhc-C--CCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec-
Confidence            34445566666664444         445553 4  777  99999999 99    99999999999999999998631 


Q ss_pred             CCCCccccceecchhccccc
Q 046424           97 NKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        97 ~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .     .-.|++|+.|..+.
T Consensus        79 r-----~~~y~LT~~G~~l~   93 (111)
T 3df8_A           79 Q-----ITTYALTEKGMNVR   93 (111)
T ss_dssp             S-----SEEEEECHHHHHHH
T ss_pred             C-----cEEEEECccHHHHH
Confidence            1     56799999887655

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=95.78  E-value=0.011  Score=40.77  Aligned_cols=45  Identities=20%  Similarity=0.213  Sum_probs=39.7

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ..|++.|.+.+  +.|..|||+.+|+    +...+.+.|..|...|++...
T Consensus         3 ~~Il~~L~~~~--~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~~   47 (81)
T 2htj_A            3 NEILEFLNRHN--GGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQRS   47 (81)
T ss_dssp             HHHHHHHHHSC--CCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            34777887765  8999999999999    999999999999999999854

>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*

Probab=95.70  E-value=0.0059  Score=46.55  Aligned_cols=56  Identities=21%  Similarity=0.221  Sum_probs=46.6

Q ss_pred             HHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           47 EIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        47 d~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ..+...+  +.|..+||+.+++    ++..+.++++.|...|+|...+        ...|.+|+.+..+.
T Consensus        15 ~l~~~~~--~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~~--------~~~~~LT~~g~~~~   70 (142)
T 1on2_A           15 MLIEEKG--YARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTSKGKKIG   70 (142)
T ss_dssp             HHHHHHS--SCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHH
T ss_pred             HHHhhcC--CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEee--------CceEEEchhHHHHH
Confidence            3444545  8999999999999    9999999999999999999762        46799998876554

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=95.67  E-value=0.0084  Score=41.18  Aligned_cols=60  Identities=17%  Similarity=0.237  Sum_probs=48.1

Q ss_pred             HhhChhHHHhhcCC-CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           41 TELGLLEIMAKASP-TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        41 ~~lglfd~L~~~g~-~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      .+..|+++|.+.++ .++|+.|||+++|+    +...+.+.|.-|...|++....    ..  .+.|..++
T Consensus        15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g----~~--~~~W~i~~   75 (77)
T 1qgp_A           15 QEQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA----GT--PPLWKIAV   75 (77)
T ss_dssp             HHHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC----SS--SCEEEECC
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC----CC--CCceEecC
Confidence            35668888888742 26999999999999    9999999999999999998752    11  57787764

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=95.63  E-value=0.012  Score=53.01  Aligned_cols=62  Identities=13%  Similarity=0.115  Sum_probs=45.9

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEEeccCCCC---CCCC-CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----PGVEHVGGDMFVE---VPKG-QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gD~f~~---~P~~-D~~~l  265 (266)
                      ..+|||+|||+|.++..+++...  +++.+|+. ..++.++.+     -..++..+|.++.   .+.. |++++
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~  286 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLL  286 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEE
T ss_pred             CCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEE
Confidence            68999999999999999999854  49999995 466665542     1235668998873   2333 88875

>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2

Probab=95.61  E-value=0.0098  Score=50.11  Aligned_cols=58  Identities=17%  Similarity=0.190  Sum_probs=48.5

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS  112 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s  112 (266)
                      -+.|++.|.+.+ .++|+.|||+.+|+    +...+.|+|+.|...|+++...        .+.|++++..
T Consensus        10 ~l~iL~~l~~~~-~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~--------~~~Y~lg~~~   67 (249)
T 1mkm_A           10 AFEILDFIVKNP-GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRKK--------DKRYVPGYKL   67 (249)
T ss_dssp             HHHHHHHHHHCS-SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECT--------TSCEEECTHH
T ss_pred             HHHHHHHHHhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEECC--------CCcEEECHHH
Confidence            356788887653 27999999999999    9999999999999999999751        5789998743

>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A

Probab=95.61  E-value=0.046  Score=41.24  Aligned_cols=67  Identities=9%  Similarity=0.027  Sum_probs=49.6

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|. .+  +.|..+||+.+++    +...+.++++-|...|+++.... ..|++ .-.+.+|+.+..+.
T Consensus        38 ~~~~iL~~l~-~~--~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~-~~d~r-~~~~~lT~~G~~~~  104 (146)
T 2gxg_A           38 LDFLVLRATS-DG--PKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRD-REDRR-KILIEITEKGLETF  104 (146)
T ss_dssp             HHHHHHHHHT-TS--CBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEC-SSCTT-CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHh-cC--CcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecC-CCCCc-eEEEEECHHHHHHH
Confidence            4555777887 55  8999999999999    99999999999999999997621 11111 22367777665444

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=95.60  E-value=0.014  Score=50.57  Aligned_cols=59  Identities=14%  Similarity=0.159  Sum_probs=44.6

Q ss_pred             CCCCceEEEecCCc------cHHHHHHHHHCC-CCeEEEeechHHHhhCCCCCCceE-EeccCCC-CCCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGL------GANLKSIVSKYP-QLRGINFDLPHVLKHAPSCPGVEH-VGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~------G~~~~~l~~~~P-~l~~~v~Dlp~vi~~a~~~~ri~~-~~gD~f~-~~P~~-D~~~l  265 (266)
                      .....+|+|||||+      |.  ..+++..| +.+++.+|+.+.      .+++++ +.+|+.+ +.+.. |+++-
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvs  129 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIIS  129 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------CCCCEEEEECccccCCccCcccEEEE
Confidence            45667999999955      66  44566777 689999999765      147999 9999998 45544 88863

>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A

Probab=95.51  E-value=0.0088  Score=50.18  Aligned_cols=62  Identities=13%  Similarity=0.137  Sum_probs=49.9

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYF  115 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l  115 (266)
                      -+.|++.|.+.+ .++|+.|||+.+|+    +..-+.|+|+.|...|+++...   .    .++|++++....+
T Consensus         8 ~l~iL~~l~~~~-~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~---~----~~~Y~lg~~~~~l   69 (241)
T 2xrn_A            8 AASIMRALGSHP-HGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG---P----AGGFRLGPALGQL   69 (241)
T ss_dssp             HHHHHHHHHTCT-TCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG---G----GCEEEECSHHHHH
T ss_pred             HHHHHHHHHhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---C----CCeEEECHHHHHH
Confidence            345788887653 27999999999999    9999999999999999999862   0    4789998754433

>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}

Probab=95.48  E-value=0.0089  Score=46.59  Aligned_cols=68  Identities=21%  Similarity=0.364  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424           33 LPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS  112 (266)
Q Consensus        33 ~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s  112 (266)
                      ...+|.--.++.|+..|.. +  +.|+.+||+.+|+    +...+.+.|+.|...|+|+..+    +|+ .-.|++|+.+
T Consensus        51 ~l~aL~~p~R~~IL~~L~~-~--~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~----~Gr-~~~y~lt~~~  118 (151)
T 3f6v_A           51 QLEVAAEPTRRRLVQLLTS-G--EQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRK----DGR-FRYYRLDPQG  118 (151)
T ss_dssp             HHHHHTSHHHHHHHHHGGG-C--CEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEECHHH
T ss_pred             HHHHhCCHHHHHHHHHHHh-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEe----cCC-EEEEEEChHH
Confidence            3566666788899999985 4  8999999999999    9999999999999999999763    221 3458887644

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.47  E-value=0.0062  Score=59.13  Aligned_cols=64  Identities=11%  Similarity=0.056  Sum_probs=48.6

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------CCceEEeccCCCC---CCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--------PGVEHVGGDMFVE---VPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--------~ri~~~~gD~f~~---~P~~-D~~~l  265 (266)
                      ...+|||+|||+|.++..+++... -+++.+|+. ..++.++.+        ++++++.+|.++.   .... |+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence            347999999999999999988543 369999995 466655431        4899999999983   2233 88876

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=95.43  E-value=0.0081  Score=55.45  Aligned_cols=66  Identities=6%  Similarity=0.043  Sum_probs=50.5

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeech-HHHhhCCCC------CCceEEeccCCC-C--CCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDLP-HVLKHAPSC------PGVEHVGGDMFV-E--VPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi~~a~~~------~ri~~~~gD~f~-~--~P~~-D~~~l  265 (266)
                      .....+|+|+|||+|..+..+++..++ .+++.+|+. ..++.++++      . |+++.+|..+ +  .+.. |+|++
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLL  176 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEE
Confidence            445689999999999999999999875 689999994 455555432      4 8999999876 2  3444 88874

>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A

Probab=95.42  E-value=0.0084  Score=43.53  Aligned_cols=47  Identities=21%  Similarity=0.338  Sum_probs=40.9

Q ss_pred             HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      -.++.|+..|.. +  +.++.|||+.+|+    +...+.+.|+.|...|++...
T Consensus        26 ~~r~~IL~~L~~-~--~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~   72 (106)
T 1r1u_A           26 YNRIRIMELLSV-S--EASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK   72 (106)
T ss_dssp             HHHHHHHHHHHH-C--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHh-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            355667777874 4  8999999999999    999999999999999999976

>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}

Probab=95.40  E-value=0.015  Score=43.75  Aligned_cols=45  Identities=16%  Similarity=0.080  Sum_probs=37.7

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +.|..+||+.+++    ++..+.++|+.|...|+++..+  +.    .+.|.++.
T Consensus        26 ~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~--g~----~ggy~L~~   70 (129)
T 2y75_A           26 PTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR--GA----YGGYVLGS   70 (129)
T ss_dssp             CBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESS
T ss_pred             cCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC--CC----CCceEeCC
Confidence            8999999999999    9999999999999999998752  11    36688765

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=95.36  E-value=0.019  Score=53.23  Aligned_cols=65  Identities=20%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             CCceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCC------CCCceEEeccCCC-C--CCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-E--VPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~--~P~~-D~~~l  265 (266)
                      ...+|+|+|||.|..+..+++..+ ..+++.+|+. ..++.++.      .++|+++.+|..+ +  .+.. |+|++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence            567999999999999999999976 5789999985 35554443      2579999999987 3  4444 88875

>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19

Probab=95.35  E-value=0.013  Score=40.78  Aligned_cols=60  Identities=8%  Similarity=0.016  Sum_probs=47.9

Q ss_pred             HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424           40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS  112 (266)
Q Consensus        40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s  112 (266)
                      .....|++.|.+.   ++|+.|||+++|+    +...+++.|.-|...|++.....    .  ...|+++...
T Consensus        17 ~~~~~IL~lL~~~---g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~~----~--PP~W~~~~~~   76 (82)
T 1oyi_A           17 EIVCEAIKTIGIE---GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSDD----I--PPRWFMTTEA   76 (82)
T ss_dssp             HHHHHHHHHHSSS---TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECSS----S--SCEEESCC--
T ss_pred             HHHHHHHHHHHHc---CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCCC----C--CCcceeccCc
Confidence            3455678889865   5999999999999    99999999999999999997621    1  5778887643

>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}

Probab=95.34  E-value=0.006  Score=51.71  Aligned_cols=61  Identities=15%  Similarity=0.183  Sum_probs=50.1

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      -+.|++.|...+ .++|+.|||+.+|+    +..-+.|+|..|...|+++.+         ++.|++++....+.
T Consensus        16 ~l~iL~~l~~~~-~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~---------~~~Y~Lg~~~~~l~   76 (257)
T 2g7u_A           16 GFAVLLAFDAQR-PNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS---------GGRWSLTPRVLSIG   76 (257)
T ss_dssp             HHHHHHTCSSSC-SSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECGGGHHHH
T ss_pred             HHHHHHHHHhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC---------CCEEEEcHHHHHHH
Confidence            345677776532 38999999999999    999999999999999999986         57899998655444

>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A

Probab=95.31  E-value=0.0045  Score=45.26  Aligned_cols=46  Identities=17%  Similarity=0.221  Sum_probs=40.0

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .++.|+..|.. |  +.|+.|||+.+|+    ++..+.+.|+.|...|+|...
T Consensus        26 ~r~~IL~~L~~-~--~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~   71 (108)
T 2kko_A           26 RRLQILDLLAQ-G--ERAVEAIATATGM----NLTTASANLQALKSGGLVEAR   71 (108)
T ss_dssp             TTHHHHHHHTT-C--CEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHc-C--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            44566777765 4  8999999999999    999999999999999999976

>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}

Probab=95.30  E-value=0.013  Score=43.95  Aligned_cols=68  Identities=16%  Similarity=0.301  Sum_probs=50.7

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  +.|..+||+.+++    ++..+.++++-|...|++.... ...|++ .-.|.+|+.+..+.
T Consensus        34 ~~~~iL~~l~~~~--~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~r-~~~~~lT~~G~~~~  101 (139)
T 3bja_A           34 VQFGVIQVLAKSG--KVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEK-NPNDQR-ETLVYLTKKGEETK  101 (139)
T ss_dssp             HHHHHHHHHHHSC--SEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeecc-CCCCCc-eeEEEECHHHHHHH
Confidence            4555788887766  8999999999999    9999999999999999999752 111211 22367777666444

>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}

Probab=95.30  E-value=0.014  Score=45.30  Aligned_cols=68  Identities=18%  Similarity=0.254  Sum_probs=52.1

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...|  ++|..+||+.+++    ++..+.++++-|...|+|+... ...|++ .-.+.+|+.|..++
T Consensus        47 ~q~~iL~~l~~~~--~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~  114 (162)
T 3k0l_A           47 PQFTALSVLAAKP--NLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAP-DPTHGR-RILVTVTPSGLDKL  114 (162)
T ss_dssp             HHHHHHHHHHHCT--TCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEE-CCSSSC-CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecC-CCCcCC-eeEeEECHhHHHHH
Confidence            3455888888876  8999999999999    9999999999999999999763 111221 23477887776554

>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A

Probab=95.29  E-value=0.02  Score=43.46  Aligned_cols=80  Identities=14%  Similarity=0.143  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCC
Q 046424           20 DFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSNK   98 (266)
Q Consensus        20 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~   98 (266)
                      +...+++++.+-|....|.         .|.. |  +.+..||++.+ |+    ++..|.+.|+-|...|+|+.... ..
T Consensus        15 pi~~~l~~lg~kW~l~IL~---------~L~~-g--~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~-~~   77 (131)
T 4a5n_A           15 PVEFTLDVIGGKWKGILFY---------HMID-G--KKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVY-HQ   77 (131)
T ss_dssp             HHHHHHHHHCSSSHHHHHH---------HHTT-S--CBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEE-CS
T ss_pred             cHHHHHHHHcCcCHHHHHH---------HHhc-C--CcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEec-CC
Confidence            4556666666666655544         3333 4  89999999999 99    99999999999999999997631 11


Q ss_pred             CCccccceecchhcccccC
Q 046424           99 DGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        99 ~~~~~~~y~~t~~s~~l~~  117 (266)
                      +. ..-.|++|+.|..+.+
T Consensus        78 d~-r~v~y~LT~~G~~l~~   95 (131)
T 4a5n_A           78 VP-PKVEYSLTEFGRTLEP   95 (131)
T ss_dssp             SS-CEEEEEECTTGGGGHH
T ss_pred             CC-CeEEEEECHhHHHHHH
Confidence            11 1346999999887664

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=95.23  E-value=0.034  Score=48.06  Aligned_cols=57  Identities=11%  Similarity=0.108  Sum_probs=39.6

Q ss_pred             HHHHHccCCC-CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhh-CCCCCCceEE
Q 046424          191 EILEIYKGFE-GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKH-APSCPGVEHV  249 (266)
Q Consensus       191 ~i~~~~~~~~-~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~-a~~~~ri~~~  249 (266)
                      .+++.+. .. ...+++|||||+|.++..+++. +..+++.+|+. ..++. ++..+|+..+
T Consensus        75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~  134 (291)
T 3hp7_A           75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSM  134 (291)
T ss_dssp             HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEE
T ss_pred             HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCccccee
Confidence            4455554 33 3579999999999999988886 55689999994 34543 3334565444

>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}

Probab=95.21  E-value=0.01  Score=45.07  Aligned_cols=68  Identities=16%  Similarity=0.246  Sum_probs=52.5

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  +.|..+||+.+++    ++..+.++++-|...|+|+... +..|++ .-.+.+|+.|..+.
T Consensus        32 ~q~~iL~~l~~~~--~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~   99 (145)
T 3g3z_A           32 NLFAVLYTLATEG--SRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQE-GEQDRR-KRLLSLTETGKAYA   99 (145)
T ss_dssp             HHHHHHHHHHHHC--SBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECC-CSSCGG-GSCEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecc-CCCCCc-eeeeeEChhHHHHH
Confidence            4566888887776  8999999999999    9999999999999999999752 111211 23478888776554

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=95.20  E-value=0.053  Score=47.76  Aligned_cols=65  Identities=17%  Similarity=0.169  Sum_probs=53.1

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeech-HHHhhCCC--CCCceEEeccCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLP-HVLKHAPS--CPGVEHVGGDMFV  255 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~a~~--~~ri~~~~gD~f~  255 (266)
                      ..+++.+. ......+||+.+|.|..+..|+++. |+.+.+++|.. ..++.++.  .+|++++.+||-+
T Consensus        47 ~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~  115 (347)
T 3tka_A           47 DEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA  115 (347)
T ss_dssp             HHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred             HHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            56677766 5566899999999999999999985 88999999995 57776643  2799999999876

>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}

Probab=95.18  E-value=0.0059  Score=52.02  Aligned_cols=59  Identities=15%  Similarity=0.215  Sum_probs=48.6

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKY  114 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~  114 (266)
                      -+.|++.|...+ .++|+.|||+.+|+    +..-+.|+|..|...|+++.+         +++|++++....
T Consensus        23 ~l~iL~~l~~~~-~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~---------~~~Y~Lg~~~~~   81 (265)
T 2ia2_A           23 GLAVIRCFDHRN-QRRTLSDVARATDL----TRATARRFLLTLVELGYVATD---------GSAFWLTPRVLE   81 (265)
T ss_dssp             HHHHHHTCCSSC-SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES---------SSEEEECGGGGG
T ss_pred             HHHHHHHHHhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec---------CCEEEEcHHHHH
Confidence            345677776532 38999999999999    999999999999999999976         578999885433

>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69

Probab=95.18  E-value=0.01  Score=45.09  Aligned_cols=79  Identities=14%  Similarity=0.090  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCC
Q 046424           20 DFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSNK   98 (266)
Q Consensus        20 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~   98 (266)
                      +...+++++.+.|..         .|+..|.. |  +.+..||++.+ |+    ++..+.+.|+.|...|+|+.... ..
T Consensus        24 ~~~~~l~~l~~~w~l---------~IL~~L~~-g--~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~-~~   86 (131)
T 1yyv_A           24 PSREVLKHVTSRWGV---------LILVALRD-G--THRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSY-PV   86 (131)
T ss_dssp             THHHHHHHHHSHHHH---------HHHHHGGG-C--CEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEE-CS
T ss_pred             CHHHHHHHHcCCcHH---------HHHHHHHc-C--CCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEec-CC
Confidence            344455555444443         34444553 4  89999999999 79    99999999999999999997631 11


Q ss_pred             CCccccceecchhccccc
Q 046424           99 DGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        99 ~~~~~~~y~~t~~s~~l~  116 (266)
                      +++ .-.|++|+.+..+.
T Consensus        87 d~r-~~~y~LT~~G~~l~  103 (131)
T 1yyv_A           87 VPP-HVEYSLTPLGEQVS  103 (131)
T ss_dssp             SSC-EEEEEECHHHHHHH
T ss_pred             CCC-eEEEEECccHHHHH
Confidence            111 33699999886554

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=95.17  E-value=0.034  Score=48.48  Aligned_cols=67  Identities=16%  Similarity=0.201  Sum_probs=50.0

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeech-HHHhhCCC------CCCceEEeccCCCC---CC--CC-CEEE
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFVE---VP--KG-QAIF  264 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~~---~P--~~-D~~~  264 (266)
                      .....+|+|+|+|.|..+..+++.. +.-+++.+|+. ..++.+++      ..+|+++.+|+.+-   .+  .. |.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            4456899999999999999999984 56789999994 35554443      25799999998762   11  23 8887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       180 ~  180 (309)
T 2b9e_A          180 L  180 (309)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}

Probab=95.17  E-value=0.0041  Score=52.87  Aligned_cols=58  Identities=19%  Similarity=0.229  Sum_probs=48.0

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS  112 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s  112 (266)
                      +.|+++|.+.+ .++|+.|||+.+|+    +..-+.|+|..|...|++..+.   .    .++|++++..
T Consensus         9 l~IL~~l~~~~-~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~---~----~~~Y~lG~~~   66 (260)
T 3r4k_A            9 LTLLTYFNHGR-LEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVE---G----ARSYRLGPQV   66 (260)
T ss_dssp             HHHHTTCBTTB-SEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECS---S----SSEEEECTTH
T ss_pred             HHHHHHHhhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---C----CCcEEcCHHH
Confidence            45778887632 38999999999999    9999999999999999999872   0    3789998743

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=95.12  E-value=0.018  Score=51.75  Aligned_cols=65  Identities=9%  Similarity=-0.067  Sum_probs=48.8

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----C-----------------CCceEEeccCCCC--
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----C-----------------PGVEHVGGDMFVE--  256 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~-----------------~ri~~~~gD~f~~--  256 (266)
                      ...+|+|+|||+|..++.++++.|..+++.+|+. +.++.++.    +                 +.|+++.+|..+.  
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            3578999999999999999999998899999994 45554432    1                 2388899998662  


Q ss_pred             -CCCC-CEEEe
Q 046424          257 -VPKG-QAIFM  265 (266)
Q Consensus       257 -~P~~-D~~~l  265 (266)
                       .+.. |++++
T Consensus       127 ~~~~~fD~I~l  137 (378)
T 2dul_A          127 ERHRYFHFIDL  137 (378)
T ss_dssp             HSTTCEEEEEE
T ss_pred             hccCCCCEEEe
Confidence             3333 77764

>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}

Probab=95.08  E-value=0.014  Score=43.98  Aligned_cols=68  Identities=16%  Similarity=0.219  Sum_probs=53.4

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  +.|..+||+.+++    ++..+.+.++-|...|+++... ...|++ .-.|.+|+.+..+.
T Consensus        32 ~~~~iL~~l~~~~--~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~-~~~d~r-~~~~~lT~~G~~~~   99 (142)
T 3bdd_A           32 TRYSILQTLLKDA--PLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKR-NPDNQR-EVLVWPTEQAREAL   99 (142)
T ss_dssp             HHHHHHHHHHHHC--SBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence            4455888887766  8999999999999    9999999999999999999763 111221 33588888887666

>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}

Probab=95.07  E-value=0.01  Score=45.22  Aligned_cols=68  Identities=19%  Similarity=0.258  Sum_probs=49.1

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...|  ++|..+||+.+++    ++..+.++++-|...|+|+.... ..|++ .-.+.+|+.+..+.
T Consensus        41 ~~~~iL~~l~~~~--~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~-~~D~R-~~~~~lT~~G~~~~  108 (148)
T 3nrv_A           41 TEWRIISVLSSAS--DCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGH-SEDKR-TYAINLTEMGQELY  108 (148)
T ss_dssp             HHHHHHHHHHHSS--SBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHHcCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecC-CCCcc-eeEeEECHhHHHHH
Confidence            4566888888876  8999999999999    99999999999999999997621 11221 23466776665443

>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}

Probab=95.03  E-value=0.05  Score=41.42  Aligned_cols=69  Identities=12%  Similarity=0.194  Sum_probs=47.3

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+ +++|..+||+.+++    ++..+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus        40 ~q~~vL~~l~~~~-~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~  108 (150)
T 3fm5_A           40 RSYSVLVLACEQA-EGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTL-DPSDRR-NKLIAATEEGRRLR  108 (150)
T ss_dssp             HHHHHHHHHHHST-TCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-------------CEECHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeC-Cccccc-hheeeECHHHHHHH
Confidence            4555777776543 27899999999999    9999999999999999999752 111111 12267777666544

>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69

Probab=95.02  E-value=0.046  Score=39.59  Aligned_cols=81  Identities=15%  Similarity=0.189  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCcccccccc
Q 046424           18 EQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVS   96 (266)
Q Consensus        18 ~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~   96 (266)
                      .-+...+++.+.+.+....|.         .|.. |  +.+..||++.+ |+    ++..+.+.|+.|...|+|+.... 
T Consensus        12 ~c~~~~~l~~l~~~~~~~IL~---------~L~~-~--~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~-   74 (107)
T 2fsw_A           12 ECPVRKSMQIFAGKWTLLIIF---------QINR-R--IIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQY-   74 (107)
T ss_dssp             TCHHHHHHHHHTSSSHHHHHH---------HHTT-S--CEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEE-
T ss_pred             CCCHHHHHHHHcCccHHHHHH---------HHHh-C--CcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeec-
Confidence            345566666666666654443         4443 4  89999999999 59    99999999999999999997631 


Q ss_pred             CCCCccccceecchhccccc
Q 046424           97 NKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        97 ~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ..+++ .-.|.+|+.+..+.
T Consensus        75 ~~d~r-~~~y~LT~~G~~l~   93 (107)
T 2fsw_A           75 PEVPP-RVEYSLTPLGEKVL   93 (107)
T ss_dssp             CSSSC-EEEEEECHHHHTTH
T ss_pred             CCCCC-eeEEEECccHHHHH
Confidence            11111 34599999887554

>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}

Probab=95.00  E-value=0.013  Score=49.50  Aligned_cols=63  Identities=19%  Similarity=0.236  Sum_probs=52.5

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|.+.+  ++|..|||+.+|+    +...+.|.|+-|...|+++..+  .     ...|.+|+.+..+.
T Consensus       153 ~~~~IL~~L~~~~--~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~--r-----~~~~~LT~~G~~l~  215 (244)
T 2wte_A          153 EEMKLLNVLYETK--GTGITELAKMLDK----SEKTLINKIAELKKFGILTQKG--K-----DRKVELNELGLNVI  215 (244)
T ss_dssp             HHHHHHHHHHHHT--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET--T-----TTEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC--C-----ccEEEECHHHHHHH
Confidence            3556777776666  8999999999999    9999999999999999999762  1     56799999887654

>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}

Probab=95.00  E-value=0.0088  Score=45.36  Aligned_cols=68  Identities=19%  Similarity=0.226  Sum_probs=50.7

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  ++|..+||+.+++    ++..+.++++-|...|+|+... ...|++ .-.+.+|+.|..+.
T Consensus        38 ~~~~iL~~l~~~~--~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~  105 (143)
T 3oop_A           38 EQWSVLEGIEANE--PISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREI-STEDRR-ISLLSLTDKGRKET  105 (143)
T ss_dssp             HHHHHHHHHHHHS--SEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-----CC-SCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccC-CCccCc-eeeeeECHHHHHHH
Confidence            4556778887766  8999999999999    9999999999999999999762 111221 23477787766544

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=94.99  E-value=0.012  Score=40.47  Aligned_cols=44  Identities=14%  Similarity=0.160  Sum_probs=38.5

Q ss_pred             hhHHHhhc-----CCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           45 LLEIMAKA-----SPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        45 lfd~L~~~-----g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      |++.|.+.     | .|.|+.|||+.+|+    ++..+++-|..|...|++...
T Consensus         9 IL~~I~~~i~~~~g-~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~   57 (77)
T 2jt1_A            9 IISIVQERQNMDDG-APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV   57 (77)
T ss_dssp             HHHHHHHHHHHHTT-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHhhccC-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence            56666665     3 29999999999999    889999999999999999987

>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0

Probab=94.96  E-value=0.03  Score=44.11  Aligned_cols=45  Identities=27%  Similarity=0.459  Sum_probs=39.0

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      ++|.++||+.+++    ++..+++++..|...|+|+..+  +.    +|-|.+..
T Consensus        28 ~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~r--G~----~GGy~Lar   72 (162)
T 3k69_A           28 KVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTV--GK----NGGYQLDL   72 (162)
T ss_dssp             CBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEEC--ST----TCEEECCS
T ss_pred             CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec--CC----CCCeEecC
Confidence            8999999999999    9999999999999999998763  21    45688875

>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}

Probab=94.96  E-value=0.015  Score=44.59  Aligned_cols=68  Identities=13%  Similarity=0.133  Sum_probs=50.1

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  ++|..+||+.+++    +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus        44 ~~~~iL~~l~~~~--~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~~~  111 (155)
T 3cdh_A           44 PEWRVLACLVDND--AMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVA-DAKDKR-RVRVRLTDDGRALA  111 (155)
T ss_dssp             HHHHHHHHHSSCS--CBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC--------CCCEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCC--CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CCCcCC-eeEeEECHHHHHHH
Confidence            3455778887765  8999999999999    9999999999999999999752 111111 23477887776544

>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=94.94  E-value=0.014  Score=43.77  Aligned_cols=68  Identities=12%  Similarity=0.193  Sum_probs=50.8

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  +.|..+||+.+++    +...+.++++-|...|+++.... ..|++ .-.|.+|+.+..+.
T Consensus        39 ~~~~iL~~l~~~~--~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~-~~d~R-~~~~~lT~~G~~~~  106 (140)
T 2nnn_A           39 TQWAALVRLGETG--PCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSAD-PDDGR-RLLVSLSPAGRAEL  106 (140)
T ss_dssp             HHHHHHHHHHHHS--SBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEE-TTEEE-EEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCC-CCCCC-eeeeEECHhHHHHH
Confidence            4566888887766  8999999999999    99999999999999999997521 11110 12377777665443

>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0

Probab=94.92  E-value=0.013  Score=44.14  Aligned_cols=70  Identities=19%  Similarity=0.210  Sum_probs=51.1

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+.++.|..+||+.+++    ++..+.++++-|...|+|+... +..|++ .-.+.+|+.|..+.
T Consensus        32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~-~~~D~R-~~~~~LT~~G~~~~  101 (139)
T 3eco_A           32 EQGHTLGYLYAHQQDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYV-DAQDTR-RKNIGLTTSGIKLV  101 (139)
T ss_dssp             HHHHHHHHHHHSTTTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CCC--C-CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecC-CCCCCC-eeeeEECHHHHHHH
Confidence            4556777787764348999999999999    9999999999999999999763 111221 23467777666544

>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A

Probab=94.91  E-value=0.016  Score=43.27  Aligned_cols=47  Identities=21%  Similarity=0.393  Sum_probs=41.4

Q ss_pred             HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      -.++.|+..|.+ +  +.++.+||+.+|+    +...+.+.|+.|...|++...
T Consensus        46 ~~rl~IL~~L~~-~--~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~   92 (122)
T 1r1t_A           46 PNRLRLLSLLAR-S--ELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR   92 (122)
T ss_dssp             HHHHHHHHHHTT-C--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHc-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            356678888875 4  8999999999999    999999999999999999976

>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69

Probab=94.82  E-value=0.018  Score=42.21  Aligned_cols=79  Identities=18%  Similarity=0.179  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCC
Q 046424           20 DFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSNK   98 (266)
Q Consensus        20 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~   98 (266)
                      +...+++...+.+...         |+..|.. |  +.+..|||+.+ ++    ++..+.+.|+-|...|+|+.... ..
T Consensus        11 ~~~~~l~~l~~~~~~~---------IL~~L~~-~--~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~-~~   73 (112)
T 1z7u_A           11 SINLALSTINGKWKLS---------LMDELFQ-G--TKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESF-NE   73 (112)
T ss_dssp             HHHHHHHTTCSTTHHH---------HHHHHHH-S--CBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEE-CC
T ss_pred             CHHHHHHHHcCccHHH---------HHHHHHh-C--CCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeec-CC
Confidence            3444444444444433         4445554 4  89999999999 99    99999999999999999997631 11


Q ss_pred             CCccccceecchhccccc
Q 046424           99 DGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        99 ~~~~~~~y~~t~~s~~l~  116 (266)
                      |++ .-.|.+|+.+..+.
T Consensus        74 d~r-~~~~~LT~~G~~~~   90 (112)
T 1z7u_A           74 LPP-RVEYTLTPEGYALY   90 (112)
T ss_dssp             SSC-EEEEEECHHHHHHH
T ss_pred             CCC-eEEEEECHhHHHHH
Confidence            111 33489998876544

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=94.82  E-value=0.0085  Score=55.19  Aligned_cols=67  Identities=6%  Similarity=-0.047  Sum_probs=50.3

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeech-HHHhhCCC------CCCceEEeccCCC-C--CCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-E--VPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~--~P~~-D~~~l  265 (266)
                      .....+|+|+|||.|..+..+++..++ .+++.+|+. ..++.+++      ..+|+++.+|..+ +  .+.. |+|++
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~  181 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVV  181 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEE
Confidence            445689999999999999999998764 689999995 35554443      2568999998876 2  3444 88874

>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28

Probab=94.78  E-value=0.017  Score=43.35  Aligned_cols=68  Identities=19%  Similarity=0.145  Sum_probs=50.8

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.++..|...+  +.|..+||+.+++    ++..+.++++-|...|+++... ...|++ .-.+.+|+.+..+.
T Consensus        35 ~~~~iL~~l~~~~--~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~R-~~~~~lT~~G~~~~  102 (138)
T 1jgs_A           35 AQFKVLCSIRCAA--CITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP-NPNDKR-GVLVKLTTGGAAIC  102 (138)
T ss_dssp             HHHHHHHHHHHHS--SBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CTTCSS-CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhcC--CCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecC-CcccCc-eeEeEEChhHHHHH
Confidence            3455777787765  8999999999999    9999999999999999999752 111211 22377887766544

>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*

Probab=94.77  E-value=0.016  Score=43.40  Aligned_cols=68  Identities=13%  Similarity=0.193  Sum_probs=50.0

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  +.|..+||+.+++    +...+.++++-|...|+++.... ..|++ .-.+.+|+.+..+.
T Consensus        30 ~~~~iL~~l~~~~--~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~-~~d~R-~~~~~lT~~G~~~~   97 (138)
T 3bpv_A           30 AQVACLLRIHREP--GIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQD-PENRR-RYILEVTRRGEEII   97 (138)
T ss_dssp             HHHHHHHHHHHST--TCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEE-TTEEE-EEEEEECHHHHHTH
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecC-CCCce-eEEeeECHhHHHHH
Confidence            3455777887765  8999999999999    99999999999999999997521 11110 12267777665444

>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}

Probab=94.76  E-value=0.027  Score=44.22  Aligned_cols=45  Identities=16%  Similarity=0.134  Sum_probs=39.0

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +.|.++||+.+++    ++..++++|..|...|+|...+  +.    +|.|.++.
T Consensus        44 ~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r--G~----~GGy~Lar   88 (159)
T 3lwf_A           44 PISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR--GA----HGGYVLNG   88 (159)
T ss_dssp             CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC--ST----TCEEEECS
T ss_pred             CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec--CC----CCceEecC
Confidence            8999999999999    9999999999999999999763  21    45688764

>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28

Probab=94.76  E-value=0.022  Score=43.72  Aligned_cols=68  Identities=21%  Similarity=0.101  Sum_probs=51.4

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  +.|..+||+.+++    +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus        45 ~~~~iL~~l~~~~--~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~~~~  112 (154)
T 2eth_A           45 TELYAFLYVALFG--PKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREM-DPVDRR-TYRVVLTEKGKEIF  112 (154)
T ss_dssp             HHHHHHHHHHHHC--CBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEE-CTTTSS-CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CCCCcc-eeEEEECHHHHHHH
Confidence            4666888887766  8999999999999    9999999999999999999752 111221 23367777666444

>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=94.75  E-value=0.025  Score=42.88  Aligned_cols=69  Identities=17%  Similarity=0.235  Sum_probs=51.0

Q ss_pred             HHhhChhHHHhh-cCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           40 ATELGLLEIMAK-ASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        40 a~~lglfd~L~~-~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ..++.|+..|.. .+  +.|..+||+.+++    +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus        35 ~~~~~iL~~l~~~~~--~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~  104 (147)
T 2hr3_A           35 FSQLVVLGAIDRLGG--DVTPSELAAAERM----RSSNLAALLRELERGGLIVRHA-DPQDGR-RTRVSLSSEGRRNL  104 (147)
T ss_dssp             HHHHHHHHHHHHTTS--CBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC--------CCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC--CCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCC-CCCCCC-ceeeEECHHHHHHH
Confidence            355678888877 65  8999999999999    9999999999999999999762 111111 22377777666444

>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28

Probab=94.72  E-value=0.014  Score=44.00  Aligned_cols=68  Identities=15%  Similarity=0.195  Sum_probs=50.9

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  +.|..+||+.+++    +...+.+.++-|...|+++... ...|++ .-.+.+|+.+..+.
T Consensus        38 ~~~~iL~~l~~~~--~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~R-~~~~~lT~~G~~~~  105 (142)
T 2bv6_A           38 PQFLVLTILWDES--PVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRER-SEVDQR-EVFIHLTDKSETIR  105 (142)
T ss_dssp             HHHHHHHHHHHSS--EEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeec-CCCCcc-eEEEEEChHHHHHH
Confidence            4556788887766  8999999999999    8999999999999999999763 111111 22467777665444

>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}

Probab=94.70  E-value=0.033  Score=43.56  Aligned_cols=68  Identities=18%  Similarity=0.204  Sum_probs=51.9

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  ++|..+||+.+++    +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus        46 ~~~~iL~~L~~~~--~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~~~LT~~G~~~~  113 (168)
T 2nyx_A           46 PQFRTLVILSNHG--PINLATLATLLGV----QPSATGRMVDRLVGAELIDRLP-HPTSRR-ELLAALTKRGRDVV  113 (168)
T ss_dssp             HHHHHHHHHHHHC--SEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCSS-CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHHHHHHH
Confidence            4556788887766  8999999999999    9999999999999999999752 111221 23377888776554

>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}

Probab=94.69  E-value=0.011  Score=50.25  Aligned_cols=57  Identities=23%  Similarity=0.292  Sum_probs=46.4

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS  112 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s  112 (266)
                      +.|++.|...+ .++|+.|||+.+|+    +..-+.|+|+.|...|+++.+.        .++|.+++..
T Consensus        26 l~iL~~l~~~~-~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~~--------~~~Y~lg~~~   82 (260)
T 2o0y_A           26 IDLLELFDAAH-PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSRA--------DGSYSLGPEM   82 (260)
T ss_dssp             HHHHTTCBTTB-SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHHH
T ss_pred             HHHHHHHhhCC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC--------CCeEEecHHH
Confidence            45677775422 28999999999999    9999999999999999999862        3489998753

>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A

Probab=94.67  E-value=0.064  Score=40.87  Aligned_cols=67  Identities=15%  Similarity=0.244  Sum_probs=46.5

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccc-ccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNL-VSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~-~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      +..|+..| ..+  +.|..+||+.+++    ++..+.++++-|...|+|+..+ .+..|++ .-.+.+|+.|..+.
T Consensus        40 q~~iL~~l-~~~--~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R-~~~~~lT~~G~~~~  107 (151)
T 3kp7_A           40 QSHVLNML-SIE--ALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQR-LKIIKLSNKGKKYI  107 (151)
T ss_dssp             HHHHHHHH-HHS--CBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC------------CCBEECHHHHHHH
T ss_pred             HHHHHHHH-HcC--CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCC-eeEEEECHhHHHHH
Confidence            34478888 665  8999999999999    9999999999999999999621 0111211 22366676665443

>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28

Probab=94.66  E-value=0.027  Score=43.09  Aligned_cols=67  Identities=22%  Similarity=0.187  Sum_probs=49.9

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++.|+..|...+  +.|..+||+.+++    ++..+.++++-|...|+|+.... ..|++ .-.+.+|+.+..+.
T Consensus        39 ~~~iL~~l~~~~--~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~-~~d~R-~~~~~lT~~G~~~~  105 (155)
T 1s3j_A           39 QLFVLASLKKHG--SLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHN-TKDRR-VIDLSLTDEGDIKF  105 (155)
T ss_dssp             HHHHHHHHHHHS--EEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEC-SSCTT-SEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCC-CCCCc-eEEEEECHHHHHHH
Confidence            445778887765  8999999999999    99999999999999999997621 11111 22467777665444

>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}

Probab=94.65  E-value=0.072  Score=41.01  Aligned_cols=66  Identities=14%  Similarity=0.105  Sum_probs=49.1

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ..|+..|...+  ++|..+||+.+++    ++..+.++++-|...|+|+... ...|++ .-.+.+|+.|..+.
T Consensus        53 ~~vL~~l~~~~--~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~  118 (159)
T 3s2w_A           53 FPFLMRLYRED--GINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQR-DEKDRR-SYRVFLTEKGKKLE  118 (159)
T ss_dssp             HHHHHHHHHSC--SEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CC---C-CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec-CCCCCC-eeEEEECHHHHHHH
Confidence            44677777766  8999999999999    9999999999999999999763 111221 22467777666544

>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}

Probab=94.62  E-value=0.015  Score=45.21  Aligned_cols=68  Identities=19%  Similarity=0.182  Sum_probs=51.3

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  ++|..+||+.+++    ++..+.++++-|...|+|+... ...|++ .-.+.+|+.|..+.
T Consensus        54 ~q~~vL~~l~~~~--~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~-~~~DrR-~~~~~LT~~G~~~~  121 (161)
T 3e6m_A           54 PKLRLLSSLSAYG--ELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSI-SDADQR-KRTVVLTRKGKKKL  121 (161)
T ss_dssp             HHHHHHHHHHHHS--EEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC----CCC-SCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CcccCC-eeEeeECHHHHHHH
Confidence            3455788887766  8999999999999    9999999999999999999762 111221 23477787776544

>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A

Probab=94.60  E-value=0.0089  Score=45.30  Aligned_cols=68  Identities=16%  Similarity=0.158  Sum_probs=49.7

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  +.|..+||+.+++    ++..+.++++-|...|+|+... ++.|++ .-.+.+|+.|..+.
T Consensus        37 ~q~~vL~~l~~~~--~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~  104 (140)
T 3hsr_A           37 TGYIVLMAIENDE--KLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTR-EEKDER-NLQISLTEQGKAIK  104 (140)
T ss_dssp             HHHHHHHHSCTTC--EEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHHTH
T ss_pred             HHHHHHHHHHHcC--CcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecC-CCCCcc-eeeeeEChHHHHHH
Confidence            3445677776665  8999999999999    9999999999999999999762 111221 23477888776554

>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}

Probab=94.58  E-value=0.017  Score=44.59  Aligned_cols=68  Identities=18%  Similarity=0.296  Sum_probs=48.4

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  +.|..+||+.+++    +...+.++++-|...|+|+... ...|++ .-.|.+|+.+..+.
T Consensus        50 ~~~~iL~~l~~~~--~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~  117 (162)
T 2fa5_A           50 PEWRVITILALYP--GSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRET-HGDDRR-RSMLALSPAGRQVY  117 (162)
T ss_dssp             HHHHHHHHHHHST--TCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-----------CCCEECHHHHHHH
T ss_pred             HHHHHHHHHHhCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeec-CCCCCC-eeEEEECHHHHHHH
Confidence            3455788887765  8999999999999    9999999999999999999752 111111 23466777665444

>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*

Probab=94.57  E-value=0.019  Score=43.48  Aligned_cols=69  Identities=19%  Similarity=0.178  Sum_probs=53.5

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      .++.|+..|...+  +.|..+||+.+++    +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+..
T Consensus        41 ~~~~iL~~l~~~~--~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~-~~~d~R-~~~~~LT~~G~~~~~  109 (147)
T 1z91_A           41 PQYLALLLLWEHE--TLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKR-SEEDER-SVLISLTEDGALLKE  109 (147)
T ss_dssp             HHHHHHHHHHHHS--EEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCB-CSSCTT-SBEEEECHHHHSGGG
T ss_pred             HHHHHHHHHHHCC--CCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHhHHHHHH
Confidence            4556778887766  8999999999999    9999999999999999999762 111221 234788988887664

>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}

Probab=94.56  E-value=0.018  Score=43.84  Aligned_cols=67  Identities=9%  Similarity=0.100  Sum_probs=49.8

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++.|+..|...+  +.|..+||+.+++    +...+.++++-|...|++.... ...|++ .-.+.+|+.+..+.
T Consensus        44 ~~~iL~~l~~~~--~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~~~  110 (150)
T 2rdp_A           44 QFVALQWLLEEG--DLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVR-DEHDRR-VVRIRLLEKGERII  110 (150)
T ss_dssp             HHHHHHHHHHHC--SBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CCC----CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcC--CCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecC-CCCCcc-eeEeEECHhHHHHH
Confidence            445777887766  8999999999999    9999999999999999999752 111111 23377777666444

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=94.55  E-value=0.017  Score=39.74  Aligned_cols=49  Identities=16%  Similarity=0.301  Sum_probs=41.1

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQL-----PTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~-----~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|++.|.+.+.++.|++||++.+     ++    +..-+.|.|..|...|+|.+.
T Consensus        18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~   71 (83)
T 2fu4_A           18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRH   71 (83)
T ss_dssp             HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEE
Confidence            34558888876410289999999999     88    899999999999999999976

>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}

Probab=94.53  E-value=0.049  Score=40.02  Aligned_cols=47  Identities=15%  Similarity=0.302  Sum_probs=42.0

Q ss_pred             HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      -.++.|+..|.+ +  +.|+.+||+.+++    +...+.+.|+.|...|++...
T Consensus        32 ~~~~~il~~L~~-~--~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~   78 (119)
T 2lkp_A           32 PSRLMILTQLRN-G--PLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD   78 (119)
T ss_dssp             HHHHHHHHHHHH-C--CCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred             HHHHHHHHHHHH-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            456778888877 5  8999999999999    999999999999999999875

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=94.47  E-value=0.017  Score=52.06  Aligned_cols=65  Identities=9%  Similarity=-0.007  Sum_probs=49.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCCC-------CC-ceEEeccCCCC----CCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDL-PHVLKHAPSC-------PG-VEHVGGDMFVE----VPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~~-------~r-i~~~~gD~f~~----~P~~-D~~~l  265 (266)
                      ...+|+|+++|+|.+++.++++.++ -+++.+|+ |..++.++++       ++ ++++.+|.++-    .+.. |+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            4579999999999999999998766 46899999 5566665542       45 99999998762    2334 88876

>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0

Probab=94.47  E-value=0.02  Score=43.66  Aligned_cols=69  Identities=10%  Similarity=0.171  Sum_probs=42.1

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      +..|+..|...+.+++|..+||+.+++    ++..+.++++-|...|+|+... +..|++ .-.+.+|+.|..+.
T Consensus        43 q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~DrR-~~~~~LT~~G~~~~  111 (148)
T 3jw4_A           43 QGRMIGYIYENQESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRI-PENNAR-QKNIYVLPKGAALV  111 (148)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC----------CCCCBCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeC-CCCCch-hheeeECHHHHHHH
Confidence            445777787762228999999999999    9999999999999999999762 111111 22356666665444

>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55

Probab=94.43  E-value=0.022  Score=44.12  Aligned_cols=61  Identities=18%  Similarity=0.263  Sum_probs=45.2

Q ss_pred             HHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchh
Q 046424           34 PMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPV  111 (266)
Q Consensus        34 ~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~  111 (266)
                      ..+|++.+.+...    .+  ++.|.++||+.+++    ++..++++|..|...|+|+..+     |  .|.|.++.-
T Consensus        14 ~yAl~~L~~La~~----~~--~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r-----G--~GGy~L~~~   74 (149)
T 1ylf_A           14 SIAVHILSILKNN----PS--SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR-----G--PGGAGLLKD   74 (149)
T ss_dssp             HHHHHHHHHHHHS----CG--GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESSC
T ss_pred             HHHHHHHHHHHhC----CC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc-----C--CCceEeCCC
Confidence            3456666555331    22  28999999999999    9999999999999999999762     2  466887753

>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69

Probab=94.43  E-value=0.028  Score=43.39  Aligned_cols=77  Identities=17%  Similarity=0.148  Sum_probs=54.4

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCC
Q 046424           21 FLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDG  100 (266)
Q Consensus        21 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~  100 (266)
                      ..++++++...|....|         ..|.. |  +.+..||++.+|+    +...+.+.|+-|...|+|+.... . ..
T Consensus        14 ~~~~l~~l~~~w~l~IL---------~~L~~-g--~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~-~-~d   75 (146)
T 2f2e_A           14 VARPLDVIGDGWSMLIV---------RDAFE-G--LTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPA-E-SG   75 (146)
T ss_dssp             TTTTHHHHCSSSHHHHH---------HHHHT-T--CCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEEC-S-SS
T ss_pred             HHHHHHHhCCchHHHHH---------HHHHh-C--CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEec-C-CC
Confidence            33445555555544433         33433 4  8999999999999    99999999999999999997631 1 11


Q ss_pred             ccccceecchhccccc
Q 046424          101 SVQRLYGLTPVSKYFV  116 (266)
Q Consensus       101 ~~~~~y~~t~~s~~l~  116 (266)
                      . .-.|.+|+.+..+.
T Consensus        76 ~-~~~y~LT~~G~~l~   90 (146)
T 2f2e_A           76 S-HQEYRLTDKGRALF   90 (146)
T ss_dssp             S-CEEEEECHHHHTTH
T ss_pred             C-eEEEEECchHHHHH
Confidence            1 34799999887554

>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28

Probab=94.43  E-value=0.026  Score=42.37  Aligned_cols=69  Identities=13%  Similarity=0.247  Sum_probs=50.4

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++.|+..|...++.+.|..+||+.+++    ++..+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus        36 ~~~iL~~l~~~~~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~i~lT~~G~~~~  104 (141)
T 3bro_A           36 QMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKV-SGKDSR-QKCLKLTKKANKLE  104 (141)
T ss_dssp             HHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHTTH
T ss_pred             HHHHHHHHHHCCCCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeC-CCcCCC-eeeeEECHHHHHHH
Confidence            445677777764237999999999999    9999999999999999999762 111111 22467787776444

>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}

Probab=94.42  E-value=0.027  Score=38.26  Aligned_cols=55  Identities=11%  Similarity=0.177  Sum_probs=46.3

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLT  109 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t  109 (266)
                      +-.|+++|.++| .|++..|||+.+|+    +...+..+|.-|...|.+....        .-.|.++
T Consensus        21 eekVLe~LkeaG-~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SPk--------RCyw~~~   75 (80)
T 2lnb_A           21 EQRILQVLTEAG-SPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLTS--------PATWCLG   75 (80)
T ss_dssp             HHHHHHHHHHHT-SCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE--------TTEEEES
T ss_pred             HHHHHHHHHHcC-CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCCC--------CceeeCC
Confidence            345778888877 49999999999999    9999999999999999998762        4567765

>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}

Probab=94.42  E-value=0.026  Score=42.58  Aligned_cols=47  Identities=15%  Similarity=0.029  Sum_probs=41.4

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYF  115 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l  115 (266)
                      +.|..+||+.+++    +...+.+.++.|...|+|+..         ...|.+|+.+..+
T Consensus        31 ~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~---------~~~~~Lt~~g~~~   77 (139)
T 2x4h_A           31 GAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK---------EDGVWITNNGTRS   77 (139)
T ss_dssp             CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHH
T ss_pred             CcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec---------CCeEEEChhHHHH
Confidence            8999999999999    999999999999999999976         3568888876543

>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28

Probab=94.40  E-value=0.018  Score=43.57  Aligned_cols=68  Identities=13%  Similarity=0.150  Sum_probs=50.8

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  +.|..+||+.+++    ++..+.++++-|...|+++.... ..|++ .-.|.+|+.+..+.
T Consensus        34 ~~~~iL~~l~~~~--~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~-~~d~r-~~~~~lT~~G~~~~  101 (145)
T 2a61_A           34 AQFDILQKIYFEG--PKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPD-PADRR-AYFLVITRKGEEVI  101 (145)
T ss_dssp             HHHHHHHHHHHHC--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEE-TTEEE-EEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCC-CCCCc-eEEEEECHHHHHHH
Confidence            4556778887766  8999999999999    99999999999999999997621 11110 12467777666544

>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A

Probab=94.40  E-value=0.034  Score=42.77  Aligned_cols=45  Identities=16%  Similarity=0.177  Sum_probs=38.8

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +.|.++||+.+++    ++..++++|..|...|+|...+  +.    +|.|.++.
T Consensus        28 ~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r--G~----~GGy~Lar   72 (143)
T 3t8r_A           28 CISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR--GA----KGGYQLRV   72 (143)
T ss_dssp             CEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS--SS----SSEEEESS
T ss_pred             CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC--CC----CCCeeecC
Confidence            8999999999999    9999999999999999999763  21    45688765

>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}

Probab=94.39  E-value=0.02  Score=43.84  Aligned_cols=68  Identities=10%  Similarity=0.127  Sum_probs=51.0

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc--ccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTC--NLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~--~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  ++|..+||+.+++    ++..+.++++-|...|+|+.  .. +..|++ .-.+.+|+.+..+.
T Consensus        42 ~~~~iL~~l~~~~--~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~-~~~d~R-~~~~~LT~~G~~~~  111 (154)
T 2qww_A           42 QQLAMINVIYSTP--GISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKT-IPNDSM-DLTLKLSKKGEDLS  111 (154)
T ss_dssp             HHHHHHHHHHHST--TEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC---CTTCT-TCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcC-CCCCCc-eeEeEECHHHHHHH
Confidence            3456788887776  8999999999999    99999999999999999997  42 111221 23477887766544

>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}

Probab=94.38  E-value=0.012  Score=45.04  Aligned_cols=68  Identities=15%  Similarity=0.138  Sum_probs=48.9

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  ++|..+||+.+++    ++..+.++++-|...|+|+... +..|++ .-.+.+|+.|..+.
T Consensus        42 ~q~~iL~~l~~~~--~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~  109 (149)
T 4hbl_A           42 SQYLVMLTLWEEN--PQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRER-QQSDKR-QLIITLTDNGQQQQ  109 (149)
T ss_dssp             HHHHHHHHHHHSS--SEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC-----------CEEEECSHHHHHH
T ss_pred             HHHHHHHHHHHCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCC-CCCCcc-eeeeeECHHHHHHH
Confidence            4556788887776  8999999999999    9999999999999999999762 111211 23467777665443

>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D

Probab=94.36  E-value=0.018  Score=43.01  Aligned_cols=69  Identities=10%  Similarity=0.176  Sum_probs=50.1

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      +..++..|...+.++.|..+||+.+++    ++..+.++++-|...|+|+..+ +..|++ .-.+.+|+.|..+.
T Consensus        39 q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~i~LT~~G~~~~  107 (127)
T 2frh_A           39 EFAVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKR-NEHDER-TVLILVNAQQRKKI  107 (127)
T ss_dssp             HHHHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBC-CSSSSC-CCEEECCSHHHHHH
T ss_pred             HHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence            445777776651128999999999999    9999999999999999999752 112221 23467777666544

>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}

Probab=94.33  E-value=0.02  Score=41.00  Aligned_cols=59  Identities=17%  Similarity=0.220  Sum_probs=43.7

Q ss_pred             HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      -.++.|+..|...|  +.++.|||+.+|+    ++..+.+.|+.|... ++...+    +|+ .-.|++++
T Consensus        27 ~~Rl~IL~~l~~~~--~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~----~gr-~~~y~l~~   85 (99)
T 2zkz_A           27 PMRLKIVNELYKHK--ALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNR----QGL-EIYYSINN   85 (99)
T ss_dssp             HHHHHHHHHHHHHS--CEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEE----ETT-EEEEECCC
T ss_pred             HHHHHHHHHHHHCC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheE----eCc-EEEEEECh
Confidence            34556664444445  8999999999999    999999999999999 998653    121 33466664

>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}

Probab=94.30  E-value=0.017  Score=44.12  Aligned_cols=67  Identities=13%  Similarity=0.230  Sum_probs=50.3

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++.|+..|...+  ++|..+||+.+++    +...+.++++-|...|+|+.... ..|++ .-.+.+|+.+..+.
T Consensus        42 ~~~iL~~l~~~~--~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~-~~d~R-~~~~~lT~~G~~~~  108 (152)
T 3bj6_A           42 QRAILEGLSLTP--GATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTN-PEHAR-SHRYWLTPRGEAII  108 (152)
T ss_dssp             HHHHHHHHHHST--TEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECC-SSSTT-SCEEEECHHHHHHH
T ss_pred             HHHHHHHHHhCC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCC-ccccc-ceeeEEChhhHHHH
Confidence            455788887766  8999999999999    99999999999999999997621 11111 22467777665443

>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A

Probab=94.29  E-value=0.02  Score=43.83  Aligned_cols=69  Identities=19%  Similarity=0.224  Sum_probs=51.7

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      .++.|+..|...+  ++|..+||+.+++    +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+..
T Consensus        48 ~~~~iL~~l~~~~--~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~~~  116 (153)
T 2pex_A           48 PQYLVMLVLWETD--ERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTR-AASDER-QVIIALTETGRALRS  116 (153)
T ss_dssp             HHHHHHHHHHHSC--SEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHHGGG
T ss_pred             HHHHHHHHHHhCC--CcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecC-CcccCC-eeEeeECHHHHHHHH
Confidence            3556788887766  8999999999999    9999999999999999999762 111111 224788888876664

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=94.28  E-value=0.046  Score=48.15  Aligned_cols=55  Identities=15%  Similarity=0.193  Sum_probs=47.7

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC---------------------------CCCceEEeccC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS---------------------------CPGVEHVGGDM  253 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~---------------------------~~ri~~~~gD~  253 (266)
                      +...||.+|||......++...+|+++.+=+|+|+|++.-+.                           .+++++++.|+
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL  176 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  176 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence            568999999999999999999999999999999998875211                           16899999999


Q ss_pred             CC
Q 046424          254 FV  255 (266)
Q Consensus       254 f~  255 (266)
                      .+
T Consensus       177 ~d  178 (334)
T 1rjd_A          177 ND  178 (334)
T ss_dssp             TC
T ss_pred             CC
Confidence            98

>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50

Probab=94.28  E-value=0.026  Score=40.23  Aligned_cols=47  Identities=17%  Similarity=0.331  Sum_probs=41.2

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .++.|+..|...+  +.|..+||+.+++    +...+.+.++.|...|+|...
T Consensus        21 ~~~~il~~l~~~~--~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~   67 (109)
T 1sfx_A           21 SDVRIYSLLLERG--GMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE   67 (109)
T ss_dssp             HHHHHHHHHHHHC--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence            3555777776665  8999999999999    999999999999999999976

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=94.24  E-value=0.13  Score=45.99  Aligned_cols=63  Identities=24%  Similarity=0.353  Sum_probs=44.0

Q ss_pred             CceEEEecCCccHHHHHH--------HHHC-------CCCeEEEeechH-----HHhhCCC----------------CCC
Q 046424          202 LNQLVDVAGGLGANLKSI--------VSKY-------PQLRGINFDLPH-----VLKHAPS----------------CPG  245 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l--------~~~~-------P~l~~~v~Dlp~-----vi~~a~~----------------~~r  245 (266)
                      .-+|+|+|||+|..+..+        .+++       |+++++.-|||.     +......                .+.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            578999999999977766        3344       889999999984     2222221                011


Q ss_pred             -ceEEeccCCC-CCCCC--CEEE
Q 046424          246 -VEHVGGDMFV-EVPKG--QAIF  264 (266)
Q Consensus       246 -i~~~~gD~f~-~~P~~--D~~~  264 (266)
                       +.-++|.|+. -+|.+  |+++
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~  155 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFH  155 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEE
T ss_pred             EEEecChhhhcccCCCcceEEEE
Confidence             4557899999 68876  7765

>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28

Probab=94.23  E-value=0.023  Score=42.93  Aligned_cols=67  Identities=12%  Similarity=0.076  Sum_probs=49.9

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++.|+..|...+  +.|..+||+.+++    +...+.++++-|...|++.... .+.|++ .-.+.+|+.+..+.
T Consensus        31 ~~~iL~~l~~~~--~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~-~~~d~R-~~~~~lT~~G~~~~   97 (144)
T 1lj9_A           31 QYLYLVRVCENP--GIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQE-DASNKK-IKRIYATEKGKNVY   97 (144)
T ss_dssp             HHHHHHHHHHST--TEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHCc--CcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeec-CCCCCc-eeeeEEChhHHHHH
Confidence            445777787766  8999999999999    9999999999999999999763 111111 22367777665444

>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=94.22  E-value=0.025  Score=42.70  Aligned_cols=66  Identities=18%  Similarity=0.155  Sum_probs=47.8

Q ss_pred             hhChhHHH-hhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccc
Q 046424           42 ELGLLEIM-AKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYF  115 (266)
Q Consensus        42 ~lglfd~L-~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l  115 (266)
                      ++.|+..| ...+  +.|..+||+.+++    ++..+.++++-|...|+++... ...|++ .-.+.+|+.+..+
T Consensus        39 ~~~iL~~l~~~~~--~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~-~~~d~R-~~~~~lT~~G~~~  105 (146)
T 2fbh_A           39 RWLVLLHLARHRD--SPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLA-VAEDRR-AKHIVLTPKADVL  105 (146)
T ss_dssp             HHHHHHHHHHCSS--CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-CBTTBC-SCEEEECTTHHHH
T ss_pred             HHHHHHHHHHcCC--CCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecC-CCcccC-eeeeEECHhHHHH
Confidence            44577777 5555  8999999999999    9999999999999999999762 111111 2236666655543

>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}

Probab=94.17  E-value=0.021  Score=44.12  Aligned_cols=68  Identities=16%  Similarity=0.177  Sum_probs=50.9

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  ++|..+||+.+++    +...+.++++-|...|+|+... ...|++ .-.|.+|+.+..+.
T Consensus        53 ~~~~iL~~l~~~~--~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~~~~  120 (162)
T 3cjn_A           53 AKMRALAILSAKD--GLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREV-DSDDQR-SSRVYLTPAGRAVY  120 (162)
T ss_dssp             HHHHHHHHHHHSC--SEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-C--CCS-SEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCC--CCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence            4556788888766  8999999999999    9999999999999999999752 111211 23477777665443

>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}

Probab=93.99  E-value=0.044  Score=42.24  Aligned_cols=58  Identities=16%  Similarity=0.216  Sum_probs=46.4

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      |...|..++  +.|..+||+.+++    +...+.+.++.|...|+|+...        +..+.+|+.+..+.
T Consensus        45 i~~~l~~~~--~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~~--------~~~~~lT~~g~~~~  102 (155)
T 2h09_A           45 ISDLIREVG--EARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMIP--------WRGVFLTAEGEKLA  102 (155)
T ss_dssp             HHHHHHHHS--CCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEET--------TTEEEECHHHHHHH
T ss_pred             HHHHHHhCC--CcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEec--------CCceEEChhHHHHH
Confidence            334665555  7999999999999    9999999999999999998762        45578888776443

>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=93.98  E-value=0.023  Score=42.63  Aligned_cols=68  Identities=15%  Similarity=0.131  Sum_probs=50.8

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  +.|..+||+.+++    +...+.++++-|...|+|+.... ..|++ .-.+.+|+.+..+.
T Consensus        37 ~~~~iL~~l~~~~--~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~-~~d~R-~~~~~lT~~G~~~~  104 (142)
T 2fbi_A           37 QQWRVIRILRQQG--EMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKA-PKDQR-RVYVNLTEKGQQCF  104 (142)
T ss_dssp             HHHHHHHHHHHHC--SEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEE-TTEEE-EEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecC-CCCCC-eeEEEECHHHHHHH
Confidence            4556788887766  8999999999999    99999999999999999997621 11110 22367777666444

>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}

Probab=93.76  E-value=0.035  Score=41.97  Aligned_cols=67  Identities=21%  Similarity=0.354  Sum_probs=46.8

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...   ++|..+||+.+++    +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus        39 ~~~~iL~~l~~~---~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~-~~~d~R-~~~~~lT~~g~~~~  105 (146)
T 3tgn_A           39 TQEHILMLLSEE---SLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSK-DSKDAR-VIFYQLTDLARPIA  105 (146)
T ss_dssp             HHHHHHHHHTTC---CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC------------CCEECGGGHHHH
T ss_pred             HHHHHHHHHHhC---CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEecc-CCCCCc-eeEEEECHhHHHHH
Confidence            455677788765   4999999999999    9999999999999999999762 111221 23466776555433

>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28

Probab=93.75  E-value=0.027  Score=44.09  Aligned_cols=68  Identities=16%  Similarity=0.149  Sum_probs=49.1

Q ss_pred             HhhChhHHHhh-cCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAK-ASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~-~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|.. .+  ++|..+||+.+++    +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus        54 ~q~~vL~~L~~~~~--~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~  122 (166)
T 3deu_A           54 THWVTLHNIHQLPP--DQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQT-CASDRR-AKRIKLTEKAEPLI  122 (166)
T ss_dssp             HHHHHHHHHHHSCS--SEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CEEEECGGGHHHH
T ss_pred             HHHHHHHHHHHcCC--CCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeC-CCCCCC-eeEEEECHHHHHHH
Confidence            45567888876 44  7999999999999    9999999999999999999762 111211 23477777666544

>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}

Probab=93.75  E-value=0.058  Score=42.01  Aligned_cols=70  Identities=13%  Similarity=0.186  Sum_probs=48.1

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...|+.++|..+||+.+++    ++..+.++++-|...|+|+... ...|++ .-.+.+|+.|..++
T Consensus        47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~  116 (168)
T 3u2r_A           47 QQYNTLRLLRSVHPEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTR-KPENRR-VVEVALTDAGLKLL  116 (168)
T ss_dssp             HHHHHHHHHHHHTTSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecC-CCCCCC-eeEeEECHHHHHHH
Confidence            4455777787742238999999999999    9999999999999999999763 111111 12467787776555

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=93.63  E-value=0.051  Score=48.67  Aligned_cols=54  Identities=15%  Similarity=0.068  Sum_probs=42.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--------------CCCceEEeccCCC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS--------------CPGVEHVGGDMFV  255 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~--------------~~ri~~~~gD~f~  255 (266)
                      .+++|+=||||.|..++++++. |.-+++++|+ |.|++.+++              .+|++++.+|-++
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~  273 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP  273 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH
Confidence            4689999999999999999975 5578999999 558776542              1578888888765

>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}

Probab=93.63  E-value=0.031  Score=43.06  Aligned_cols=67  Identities=13%  Similarity=0.106  Sum_probs=47.6

Q ss_pred             hhChhHHHh-hcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMA-KASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~-~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++.|+..|. ..+  ++|..+||+.+++    +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus        49 ~~~iL~~L~~~~~--~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~~~~  116 (160)
T 3boq_A           49 KFDAMAQLARNPD--GLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAM-SADDRR-SFSAKLTDAGLTTF  116 (160)
T ss_dssp             HHHHHHHHHHCTT--CEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC----------CEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCC--CCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeec-CCCCCC-eEEEEEChhHHHHH
Confidence            455788883 444  8999999999999    9999999999999999999752 111111 22367777665444

>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}

Probab=93.60  E-value=0.19  Score=40.07  Aligned_cols=70  Identities=21%  Similarity=0.300  Sum_probs=51.4

Q ss_pred             HHHhhChhHHHhhcCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccc
Q 046424           39 SATELGLLEIMAKASPTQLSSSEIASQLP-TNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYF  115 (266)
Q Consensus        39 ~a~~lglfd~L~~~g~~~~t~~elA~~~~-~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l  115 (266)
                      -=.++.|+..|.. +  +.|+.+|++.++ +    +...+.+.|+.|...|+|+..++....|.....|++++.+..+
T Consensus        22 ~P~Rl~il~~L~~-~--~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~~   92 (182)
T 4g6q_A           22 HPLRWRITQLLIG-R--SLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGDA   92 (182)
T ss_dssp             SHHHHHHHHHTTT-S--CEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTTS
T ss_pred             CHHHHHHHHHHHh-C--CCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccccC
Confidence            3367888889976 3  899999999996 8    7888999999999999998553111122224458888765444

>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}

Probab=93.48  E-value=0.028  Score=42.52  Aligned_cols=67  Identities=12%  Similarity=0.169  Sum_probs=50.6

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...+  + |..+||+.+++    ++..+.++++-|...|+|+... .+.|++ .-.+.+|+.|..+.
T Consensus        38 ~~~~iL~~l~~~~--~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~~~  104 (144)
T 3f3x_A           38 LDFSILKATSEEP--R-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIR-DSKDRR-IVIVEITPKGRQVL  104 (144)
T ss_dssp             HHHHHHHHHHHSC--E-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCC--C-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc-CCCCCc-eEEEEECHHHHHHH
Confidence            4556888888875  6 99999999999    9999999999999999999763 111110 11478888776544

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=93.24  E-value=0.24  Score=43.88  Aligned_cols=54  Identities=13%  Similarity=0.116  Sum_probs=41.1

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCC---CCCCceEEeccCCC
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAP---SCPGVEHVGGDMFV  255 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~---~~~ri~~~~gD~f~  255 (266)
                      ...|++||.|.|.+...|+++...-+.+++++-. .++..+   ..++++++.+|+++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~  116 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  116 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence            4789999999999999999975444688888742 222221   34799999999976

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=93.19  E-value=0.17  Score=42.31  Aligned_cols=74  Identities=12%  Similarity=0.059  Sum_probs=50.7

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHh----hCCCC--CCceEEec-cCCCCCCC-CC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLK----HAPSC--PGVEHVGG-DMFVEVPK-GQ  261 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~----~a~~~--~ri~~~~g-D~f~~~P~-~D  261 (266)
                      ..+.+.+- +....+|||+||+.|.++.-++....--+++.+|+-..--    ..+..  .-|+|..+ |+|.--|. .|
T Consensus        68 ~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~D  146 (267)
T 3p8z_A           68 QWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKCD  146 (267)
T ss_dssp             HHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCCS
T ss_pred             HHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcccc
Confidence            34455553 6666799999999999999777777666889999843211    11122  67999999 98762223 47


Q ss_pred             EEE
Q 046424          262 AIF  264 (266)
Q Consensus       262 ~~~  264 (266)
                      +++
T Consensus       147 tll  149 (267)
T 3p8z_A          147 TLL  149 (267)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*

Probab=93.06  E-value=0.064  Score=41.13  Aligned_cols=47  Identities=19%  Similarity=0.266  Sum_probs=42.1

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|+..|..++  +.|..|||+.+|+    ++..+.+.++.|...|++...
T Consensus         4 ~~~~il~~L~~~~--~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   50 (150)
T 2pn6_A            4 IDLRILKILQYNA--KYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKGY   50 (150)
T ss_dssp             HHHHHHHHHTTCT--TSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEE
Confidence            4567888998776  8999999999999    999999999999999999864

>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48

Probab=92.98  E-value=0.042  Score=38.75  Aligned_cols=63  Identities=13%  Similarity=0.008  Sum_probs=46.3

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcch-HHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPII-LDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~-l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++..|...+ .+.|..|||+.+++    ++.. +.++++-|...|++....   .|++ .-.+.+|+.+..+.
T Consensus        20 ~L~~l~~~~-~~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~---~drR-~~~~~LT~~G~~~~   83 (95)
T 2pg4_A           20 TLLEFEKKG-YEPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEET---LSYR-VKTLKLTEKGRRLA   83 (95)
T ss_dssp             HHHHHHHTT-CCCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEE---EETT-EEEEEECHHHHHHH
T ss_pred             HHHHHHhcC-CCCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCC---CCCC-eEEEEECHhHHHHH
Confidence            455565553 26999999999999    9999 999999999999999431   1111 33477888776544

>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*

Probab=92.96  E-value=0.089  Score=40.48  Aligned_cols=68  Identities=19%  Similarity=0.142  Sum_probs=48.8

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++.++-.|...+ .+.+..+||+.+++    ++..+.++++-|...|+|+... ++.|++ .-...+|+.|..+.
T Consensus        33 q~~vL~~L~~~~-~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~-~~~DrR-~~~l~LT~~G~~~~  100 (151)
T 4aik_A           33 HWVTLYNINRLP-PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHT-SANDRR-AKRIKLTEQSSPII  100 (151)
T ss_dssp             HHHHHHHHHHSC-TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECGGGHHHH
T ss_pred             HHHHHHHHHHcC-CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeec-CCCCCc-chhhhcCHHHHHHH
Confidence            344666676544 26788999999999    9999999999999999999763 122222 22477787776544

>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64

Probab=92.91  E-value=0.079  Score=43.20  Aligned_cols=72  Identities=15%  Similarity=0.202  Sum_probs=51.5

Q ss_pred             HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424           35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK  113 (266)
Q Consensus        35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~  113 (266)
                      .+|..-.++.|+..|.. +  +.|+.+||+.+|+    +...+.+.|+.|...|+|.........|+..-.|++|+.+.
T Consensus        10 kaL~~~~rl~IL~~L~~-~--~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~   81 (202)
T 2p4w_A           10 DVLGNETRRRILFLLTK-R--PYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR   81 (202)
T ss_dssp             HHHHSHHHHHHHHHHHH-S--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred             HHhCCHHHHHHHHHHHh-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHH
Confidence            34444566677777865 4  8999999999999    99999999999999999997631101111234577776544

>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A

Probab=92.91  E-value=0.078  Score=37.83  Aligned_cols=60  Identities=10%  Similarity=0.160  Sum_probs=49.5

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHh-hCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIAS-QLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~-~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++.|+-.|...+  +.|..+||+ ..++    +...+.|-++.|...|+|+..   +     ++ +.+|+.+..++
T Consensus        18 QfsiL~~L~~~~--~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~---~-----~D-l~LT~~G~~~l   78 (95)
T 1bja_A           18 TATILITIAKKD--FITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS---G-----DG-LIITGEAQDII   78 (95)
T ss_dssp             HHHHHHHHHHST--TBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE---T-----TE-EEECHHHHHHH
T ss_pred             HHHHHHHHHHCC--CCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC---C-----CC-eeeCHhHHHHH
Confidence            455677788876  999999999 9999    999999999999999999932   1     44 88888777555

>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A

Probab=92.85  E-value=0.043  Score=38.78  Aligned_cols=52  Identities=13%  Similarity=0.243  Sum_probs=40.9

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++|..+||+.+++    +...+.+++.-|...|+|...    .|++ ...|.+|+.+..+.
T Consensus        30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~----~d~R-~~~v~LT~~G~~~~   81 (95)
T 2qvo_A           30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECE----LEGR-TKIIRLTDKGQKIA   81 (95)
T ss_dssp             CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEECHHHHHHH
T ss_pred             CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCC----CCCC-eEEEEEChhHHHHH
Confidence            3899999999999    999999999999999999432    1111 23588898776554

>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28

Probab=92.80  E-value=0.04  Score=44.96  Aligned_cols=67  Identities=19%  Similarity=0.038  Sum_probs=50.2

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++.|+..|...+  ++|..+||+.+++    +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus        50 q~~iL~~L~~~~--~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~  116 (207)
T 2fxa_A           50 EHHILWIAYQLN--GASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSK-RLNDKR-NTYVQLTEEGTEVF  116 (207)
T ss_dssp             HHHHHHHHHHHT--SEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEEC-C-------CEEEECHHHHHHH
T ss_pred             HHHHHHHHHHCC--CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec-CCCCCc-eEEEEECHHHHHHH
Confidence            445777787766  8999999999999    9999999999999999999762 111221 22577888777555

>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2

Probab=92.77  E-value=0.078  Score=40.47  Aligned_cols=46  Identities=24%  Similarity=0.420  Sum_probs=41.3

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +..|+..|..++  +.|..|||+.+|+    ++..+.+.++.|...|++...
T Consensus         7 d~~il~~L~~~~--~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   52 (144)
T 2cfx_A            7 DLNIIEELKKDS--RLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQY   52 (144)
T ss_dssp             HHHHHHHHHHCS--CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            456888888776  8999999999999    999999999999999999854

>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}

Probab=92.76  E-value=0.06  Score=43.04  Aligned_cols=73  Identities=12%  Similarity=0.124  Sum_probs=54.5

Q ss_pred             HHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           39 SATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        39 ~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      ...+..|+..|...+.+++|..+||+.+++    +...+.++++-|...|+|+... ...|++ .-.+.+|+.|..+..
T Consensus        40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~~  112 (189)
T 3nqo_A           40 TSRQYMTILSILHLPEEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIP-SPHDKR-AINVKVTDLGKKVMV  112 (189)
T ss_dssp             CHHHHHHHHHHHHSCGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCSS-CEEEEECHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHHHHHHHH
Confidence            345566788887522128999999999999    9999999999999999999763 112221 245788988887664

>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A

Probab=92.74  E-value=0.048  Score=44.80  Aligned_cols=50  Identities=22%  Similarity=0.313  Sum_probs=44.6

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      +++..+||+.+++    ++..+.++++-|...|+++..+        ...+.+|+.+..+..
T Consensus        20 ~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~~--------~~~i~LT~~G~~~~~   69 (214)
T 3hrs_A           20 KITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKDK--------KAGYLLTDLGLKLVS   69 (214)
T ss_dssp             CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHHH
T ss_pred             CcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEec--------CCCeEECHHHHHHHH
Confidence            8999999999999    9999999999999999999872        467999998886653

>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71

Probab=92.70  E-value=0.083  Score=37.79  Aligned_cols=53  Identities=21%  Similarity=0.234  Sum_probs=42.9

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      +.+..+||+.+++    +...|.|+|.-|...|+|+...  ..++  .+...+|+.+..++
T Consensus        36 ~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~--~~D~--R~~v~LT~~G~~~l   88 (96)
T 2obp_A           36 PWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSV--EADG--RGHASLTQEGAALA   88 (96)
T ss_dssp             CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE--CTTS--CEEEEECHHHHHHH
T ss_pred             CcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeec--CCCC--ceeEEECHHHHHHH
Confidence            7999999999999    9999999999999999999763  1344  33467787766543

>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A

Probab=92.65  E-value=0.08  Score=40.63  Aligned_cols=47  Identities=17%  Similarity=0.133  Sum_probs=41.5

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|+..|...+  +.|..|||+.+|+    ++..+.+.++-|...|++...
T Consensus         8 ~~~~iL~~L~~~~--~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   54 (150)
T 2w25_A            8 IDRILVRELAADG--RATLSELATRAGL----SVSAVQSRVRRLESRGVVQGY   54 (150)
T ss_dssp             HHHHHHHHHHHCT--TCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            3556788888776  8999999999999    999999999999999999754

>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}

Probab=92.65  E-value=0.052  Score=40.48  Aligned_cols=47  Identities=11%  Similarity=0.249  Sum_probs=40.5

Q ss_pred             hhChhHHHhhcCCCC-CCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQ-LSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~-~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +..|+.+|.+.+ ++ +|+.|||+.+++    +...+.|.|..|...|+|...
T Consensus        28 e~~il~~L~~~~-~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~   75 (123)
T 3r0a_A           28 DLNVMKSFLNEP-DRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS   75 (123)
T ss_dssp             HHHHHHHHHHST-TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHCC-CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence            555777777654 25 899999999999    999999999999999999975

>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55

Probab=92.48  E-value=0.094  Score=40.23  Aligned_cols=43  Identities=33%  Similarity=0.414  Sum_probs=37.3

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      . |.++||+.+++    ++..++++|..|...|+|...+     |  .|-|.++.
T Consensus        24 ~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r-----G--~GGy~Lar   66 (145)
T 1xd7_A           24 T-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA-----G--VPGASLKK   66 (145)
T ss_dssp             C-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS-----S--SSSCEESS
T ss_pred             C-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec-----C--CCCceecC
Confidence            5 99999999999    9999999999999999999763     2  45587765

>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}

Probab=92.39  E-value=0.035  Score=42.60  Aligned_cols=66  Identities=18%  Similarity=0.232  Sum_probs=45.8

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++-.|.....+++|..+||+.+++    ++..+.++++-|...|+|+... +..|++ .-...+|+.|..+.
T Consensus        40 vL~~L~~~~~~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~  105 (147)
T 4b8x_A           40 ALVLLTFSKSGELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRP-NPNDGR-GTLATITDKGREVV  105 (147)
T ss_dssp             HHHHHHTSGGGEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CC-----CEEEEECHHHHHHH
T ss_pred             HHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEee-cCCcCc-eeEEEECHHHHHHH
Confidence            455554322127999999999999    9999999999999999999763 111221 22367777766444

>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A

Probab=92.31  E-value=0.093  Score=40.86  Aligned_cols=47  Identities=17%  Similarity=0.340  Sum_probs=41.7

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|+..|..++  ++|..|||+.+|+    ++..+.+.++.|...|++...
T Consensus        11 ~~~~il~~L~~~~--~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   57 (162)
T 2p5v_A           11 TDIKILQVLQENG--RLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQY   57 (162)
T ss_dssp             HHHHHHHHHHHCT--TCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEeee
Confidence            3456888888876  8999999999999    999999999999999999854

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=92.30  E-value=0.12  Score=43.72  Aligned_cols=71  Identities=15%  Similarity=0.103  Sum_probs=43.8

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHH--CCCCeE--EEeechHHHhhCCCC-CCc---eEEec-cCCCCCCCC-
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSK--YPQLRG--INFDLPHVLKHAPSC-PGV---EHVGG-DMFVEVPKG-  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~--~P~l~~--~v~Dlp~vi~~a~~~-~ri---~~~~g-D~f~~~P~~-  260 (266)
                      .+-+.+ -++...+|||+||+.|.++.-.+++  -..+++  +..|+|  +...... +++   .+..| ||++.-|.. 
T Consensus        64 EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~--~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~  140 (269)
T 2px2_A           64 WLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGH--EEPMLMQSYGWNIVTMKSGVDVFYKPSEIS  140 (269)
T ss_dssp             HHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTS--CCCCCCCSTTGGGEEEECSCCGGGSCCCCC
T ss_pred             HHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccc--cCCCcccCCCceEEEeeccCCccCCCCCCC
Confidence            444443 2677899999999999999988886  322234  334541  1222211 455   55557 999844444 


Q ss_pred             CEEE
Q 046424          261 QAIF  264 (266)
Q Consensus       261 D~~~  264 (266)
                      |+++
T Consensus       141 DvVL  144 (269)
T 2px2_A          141 DTLL  144 (269)
T ss_dssp             SEEE
T ss_pred             CEEE
Confidence            8876

>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}

Probab=92.27  E-value=0.11  Score=39.94  Aligned_cols=47  Identities=21%  Similarity=0.310  Sum_probs=41.7

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|+..|..++  +.|..|||+.+|+    ++..+.+.++.|...|++...
T Consensus        10 ~d~~il~~L~~~~--~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   56 (151)
T 2dbb_A           10 VDMQLVKILSENS--RLTYRELADILNT----TRQRIARRIDKLKKLGIIRKF   56 (151)
T ss_dssp             HHHHHHHHHHHCT--TCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            3556888888876  8999999999999    999999999999999999854

>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}

Probab=92.26  E-value=0.15  Score=39.49  Aligned_cols=73  Identities=18%  Similarity=0.154  Sum_probs=53.3

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCC-CCCCCCcchHHHHHHHHhcCCccccccccC---CCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLP-TNNKKAPIILDRMLRLLASYSFLTCNLVSN---KDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~-~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~---~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|-..+....|+++|++.++ +    +..-+.+.|+.|+..|+|++.....   ..|+..-.|.+|+.+..++
T Consensus        30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l  105 (151)
T 3u1d_A           30 TRLDVLHQILAQPDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL  105 (151)
T ss_dssp             HHHHHHHHHHHSTTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence            566677877664322589999999999 8    9999999999999999999642100   1122334799999887655


Q ss_pred             C
Q 046424          117 P  117 (266)
Q Consensus       117 ~  117 (266)
                      .
T Consensus       106 ~  106 (151)
T 3u1d_A          106 R  106 (151)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=92.20  E-value=0.14  Score=45.89  Aligned_cols=63  Identities=16%  Similarity=0.183  Sum_probs=43.9

Q ss_pred             CceEEEecCCccHHHHHHHHH-----------------CCCCeEEEeech-----------HH-HhhC-----CCCCC--
Q 046424          202 LNQLVDVAGGLGANLKSIVSK-----------------YPQLRGINFDLP-----------HV-LKHA-----PSCPG--  245 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~-----------------~P~l~~~v~Dlp-----------~v-i~~a-----~~~~r--  245 (266)
                      .-+|+|+||++|.....++..                 .|+++++.-|||           +- .+.+     ...+.  
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            688999999999988877766                 588889999998           11 1111     11111  


Q ss_pred             ceEEeccCCC-CCCCC--CEEE
Q 046424          246 VEHVGGDMFV-EVPKG--QAIF  264 (266)
Q Consensus       246 i~~~~gD~f~-~~P~~--D~~~  264 (266)
                      +.-++|.|+. -+|.+  |+++
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~  154 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLH  154 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEE
T ss_pred             EEecchhhhhccCCCCceEEEE
Confidence            4557889998 68876  7764

>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2

Probab=92.16  E-value=0.089  Score=40.47  Aligned_cols=47  Identities=13%  Similarity=0.146  Sum_probs=41.7

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|+..|..++  +.|..+||+.+|+    ++..+.+.++-|...|++...
T Consensus         8 ~~~~il~~L~~~~--~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   54 (151)
T 2cyy_A            8 IDKKIIKILQNDG--KAPLREISKITGL----AESTIHERIRKLRESGVIKKF   54 (151)
T ss_dssp             HHHHHHHHHHHCT--TCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            3556888888876  8999999999999    999999999999999999864

>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}

Probab=91.97  E-value=0.11  Score=40.65  Aligned_cols=47  Identities=13%  Similarity=0.190  Sum_probs=42.3

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|+.+|.+++  ++|..+||+.+|+    ++..+.+-++-|...|++...
T Consensus         4 ~d~~il~~L~~~~--~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~~   50 (162)
T 3i4p_A            4 LDRKILRILQEDS--TLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRRR   50 (162)
T ss_dssp             HHHHHHHHHTTCS--CSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHCC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeec
Confidence            4567889998876  8999999999999    999999999999999999853

>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28

Probab=91.96  E-value=0.047  Score=43.18  Aligned_cols=70  Identities=16%  Similarity=0.202  Sum_probs=48.5

Q ss_pred             HhhChhHHHhhcCC-CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASP-TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~-~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.|+..|...++ .++|..+||+.+++    +...+.++++-|...|+|+... ...|++ .-.+.+|+.+..+.
T Consensus        70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~~~LT~~G~~~~  140 (181)
T 2fbk_A           70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERRE-DERDRR-SASIRLTPQGRALV  140 (181)
T ss_dssp             HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC---------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence            34557888877651 12999999999999    9999999999999999999762 111111 22366777665443

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=91.91  E-value=0.12  Score=48.64  Aligned_cols=65  Identities=15%  Similarity=0.062  Sum_probs=48.8

Q ss_pred             CCceEEEecCCccHHHHHHHHHC---CCCeEEEeechH-HHhhCCCC--------CCceEEeccCCC-CCC---C-C-CE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKY---PQLRGINFDLPH-VLKHAPSC--------PGVEHVGGDMFV-EVP---K-G-QA  262 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~---P~l~~~v~Dlp~-vi~~a~~~--------~ri~~~~gD~f~-~~P---~-~-D~  262 (266)
                      ...+|+|.+||+|.++.++++..   +..+.+++|+.. .+..++.+        +++.+..+|.+. ++|   . . |+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            45799999999999999999885   467889999954 55444421        467899999998 444   2 3 88


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      |+.
T Consensus       301 Iva  303 (542)
T 3lkd_A          301 VLM  303 (542)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            874

>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2

Probab=91.89  E-value=0.1  Score=39.47  Aligned_cols=46  Identities=20%  Similarity=0.276  Sum_probs=40.4

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +..|+..|..++  +.|..+||+.+|+    ++..+.+.++.|...|++...
T Consensus         6 ~~~il~~L~~~~--~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   51 (141)
T 1i1g_A            6 DKIILEILEKDA--RTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEGY   51 (141)
T ss_dssp             HHHHHHHHHHCT--TCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEecc
Confidence            456778887765  8999999999999    999999999999999999854

>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85

Probab=91.84  E-value=0.11  Score=36.79  Aligned_cols=48  Identities=15%  Similarity=0.187  Sum_probs=40.4

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ++.|+..|.+.|...++..|||+++++    +..-+.++|+.|...|++...
T Consensus        22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~   69 (91)
T 2dk5_A           22 EKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV   69 (91)
T ss_dssp             HHHHHHHHHHHCTTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHcCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            345677777644347999999999999    999999999999999999954

>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50

Probab=91.75  E-value=0.096  Score=37.21  Aligned_cols=34  Identities=15%  Similarity=0.268  Sum_probs=32.8

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +.|..|||+.+|+    +...+.+.|+.|...|++...
T Consensus        36 ~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~   69 (109)
T 2d1h_A           36 PITSEELADIFKL----SKTTVENSLKKLIELGLVVRT   69 (109)
T ss_dssp             CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence            8999999999999    999999999999999999976

>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}

Probab=91.67  E-value=0.11  Score=38.96  Aligned_cols=34  Identities=15%  Similarity=0.198  Sum_probs=32.3

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ..|..+||+.+++    ++..+.+.++.|...|+++..
T Consensus        51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~   84 (128)
T 2vn2_A           51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE   84 (128)
T ss_dssp             SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred             CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            4799999999999    999999999999999999976

>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41

Probab=91.60  E-value=0.11  Score=37.64  Aligned_cols=47  Identities=26%  Similarity=0.383  Sum_probs=38.6

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+.|+..|...| .++|..+||+.+|+    +...+++.|..|...|+|...
T Consensus        20 ~l~Il~~l~~~g-~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~   66 (110)
T 1q1h_A           20 VIDVLRILLDKG-TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR   66 (110)
T ss_dssp             THHHHHHHHHHC-SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHHcC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            345666664333 27899999999999    999999999999999999865

>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2

Probab=91.60  E-value=0.1  Score=40.09  Aligned_cols=47  Identities=17%  Similarity=0.282  Sum_probs=41.6

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|+..|.+++  +.|..|||+.+|+    ++..+.+.++.|...|++...
T Consensus         9 ~d~~il~~L~~~~--~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   55 (152)
T 2cg4_A            9 LDRGILEALMGNA--RTAYAELAKQFGV----SPETIHVRVEKMKQAGIITGA   55 (152)
T ss_dssp             HHHHHHHHHHHCT--TSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcceE
Confidence            3456888888876  8999999999999    999999999999999999954

>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}

Probab=91.51  E-value=0.13  Score=40.64  Aligned_cols=47  Identities=17%  Similarity=0.273  Sum_probs=41.6

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|+..|..++  +.|..|||+.+|+    ++..+.+.++-|...|++...
T Consensus        18 ~d~~IL~~L~~~~--~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~~   64 (171)
T 2ia0_A           18 LDRNILRLLKKDA--RLTISELSEQLKK----PESTIHFRIKKLQERGVIERY   64 (171)
T ss_dssp             HHHHHHHHHHHCT--TCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence            3456888898876  8999999999999    999999999999999999853

>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B

Probab=91.42  E-value=0.069  Score=36.52  Aligned_cols=51  Identities=22%  Similarity=0.350  Sum_probs=40.1

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|+.+|...+  +.|..||++.++...+.++.-+.++|+-|...|+|...
T Consensus        10 ~e~~vL~~L~~~~--~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~   60 (82)
T 1p6r_A           10 AELEVMKVIWKHS--SINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH   60 (82)
T ss_dssp             HHHHHHHHHHTSS--SEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHcCC--CCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence            3556777787655  89999999999730001788999999999999999976

>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}

Probab=91.39  E-value=0.19  Score=37.12  Aligned_cols=75  Identities=17%  Similarity=0.221  Sum_probs=53.9

Q ss_pred             HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceec
Q 046424           35 MTIKSATELGLLEIMAKASPTQLSSSEIASQL------PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGL  108 (266)
Q Consensus        35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~------~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~  108 (266)
                      +.++-..++-|+..|...   |.+.-+|++.+      ++    ++..+...|+-|...|+|+........|...-.|++
T Consensus         6 ~l~~g~l~~~IL~lL~~~---p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L   78 (117)
T 4esf_A            6 EMLKGSLEGCVLEIISRR---ETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSL   78 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHS---CBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEE
T ss_pred             HHHHChHHHHHHHHHHcC---CCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEE
Confidence            445555667777788764   89999999997      67    899999999999999999975211011222345999


Q ss_pred             chhccccc
Q 046424          109 TPVSKYFV  116 (266)
Q Consensus       109 t~~s~~l~  116 (266)
                      |+.|+..+
T Consensus        79 T~~G~~~l   86 (117)
T 4esf_A           79 NEAGRQEL   86 (117)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99887544

>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A

Probab=91.37  E-value=0.066  Score=44.70  Aligned_cols=72  Identities=11%  Similarity=0.162  Sum_probs=51.7

Q ss_pred             HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccC-CCCccccceecchhcc
Q 046424           35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSN-KDGSVQRLYGLTPVSK  113 (266)
Q Consensus        35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~-~~~~~~~~y~~t~~s~  113 (266)
                      .+|.--.++.|+..|.. +  |.|+.+||+.+|+    ++..+.+.|+.|...|+|......+ ..|+..-.|++++.+.
T Consensus         7 kaL~~~~R~~IL~~L~~-g--~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~   79 (232)
T 2qlz_A            7 YILGNKVRRDLLSHLTC-M--ECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS   79 (232)
T ss_dssp             HHHTSHHHHHHHHHHTT-T--TTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred             HHhCCHHHHHHHHHHHh-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence            34444567778888875 4  8999999999999    9999999999999999999721111 0111122488887554

>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}

Probab=91.24  E-value=0.1  Score=37.47  Aligned_cols=50  Identities=18%  Similarity=0.250  Sum_probs=40.5

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +..|+..|-+.|  ++|..||++.++...+.++.-+.++|+-|...|+|+..
T Consensus        37 e~~VL~~L~~~~--~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~   86 (99)
T 2k4b_A           37 ELIVMRVIWSLG--EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE   86 (99)
T ss_dssp             CSHHHHHHHHHS--CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred             HHHHHHHHHhCC--CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence            456788887766  89999999999851111577899999999999999986

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=91.15  E-value=0.18  Score=49.43  Aligned_cols=67  Identities=15%  Similarity=0.105  Sum_probs=45.9

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCC---CeEEEeech-HHHhhC--C----C------CCCceEEeccCCCC--CCC-
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQ---LRGINFDLP-HVLKHA--P----S------CPGVEHVGGDMFVE--VPK-  259 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~---l~~~v~Dlp-~vi~~a--~----~------~~ri~~~~gD~f~~--~P~-  259 (266)
                      +....+|+|.|||+|.++.+++++.++   .+.+++|+. ..++.+  +    .      .+...+...|++.+  .+. 
T Consensus       319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~  398 (878)
T 3s1s_A          319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFA  398 (878)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGT
T ss_pred             CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccC
Confidence            335679999999999999999998873   578999985 355444  1    1      12245667777762  222 


Q ss_pred             C-CEEEe
Q 046424          260 G-QAIFM  265 (266)
Q Consensus       260 ~-D~~~l  265 (266)
                      . |+++.
T Consensus       399 kFDVVIg  405 (878)
T 3s1s_A          399 NVSVVVM  405 (878)
T ss_dssp             TEEEEEE
T ss_pred             CCCEEEE
Confidence            3 88764

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=91.04  E-value=0.14  Score=48.11  Aligned_cols=73  Identities=15%  Similarity=0.046  Sum_probs=48.8

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCC------------------CCeEEEeech-HHHhhCCC------CCC-
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP------------------QLRGINFDLP-HVLKHAPS------CPG-  245 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P------------------~l~~~v~Dlp-~vi~~a~~------~~r-  245 (266)
                      +++.+. -....+|+|.+||+|.++..+.+...                  ..+++++|+. ..+..++.      .+. 
T Consensus       161 mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~  239 (541)
T 2ar0_A          161 IIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN  239 (541)
T ss_dssp             HHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred             HHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc
Confidence            344443 33457999999999999998877532                  2468999984 45554432      132 


Q ss_pred             ----ceEEeccCCC-C-CC-CC-CEEEe
Q 046424          246 ----VEHVGGDMFV-E-VP-KG-QAIFM  265 (266)
Q Consensus       246 ----i~~~~gD~f~-~-~P-~~-D~~~l  265 (266)
                          +.+..+|.+. + .+ .. |+++.
T Consensus       240 ~~~~~~I~~gDtL~~~~~~~~~fD~Vv~  267 (541)
T 2ar0_A          240 LDHGGAIRLGNTLGSDGENLPKAHIVAT  267 (541)
T ss_dssp             GGGTBSEEESCTTSHHHHTSCCEEEEEE
T ss_pred             ccccCCeEeCCCcccccccccCCeEEEE
Confidence                7889999998 3 22 23 88874

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=91.02  E-value=0.066  Score=50.34  Aligned_cols=63  Identities=17%  Similarity=0.125  Sum_probs=44.4

Q ss_pred             ceEEEecCCccHHHHHHHHHCC---------------CCeEEEeech-HHHhhCCCC-------CCceEEeccCCC-C-C
Q 046424          203 NQLVDVAGGLGANLKSIVSKYP---------------QLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFV-E-V  257 (266)
Q Consensus       203 ~~vvDVGGG~G~~~~~l~~~~P---------------~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~-~-~  257 (266)
                      .+|+|.+||+|.++.++.+..+               ..+.+++|+. ..+..++.+       .+|.+..+|.+. + .
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~  325 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH  325 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence            4999999999999998866543               5678999994 455554431       345558899887 3 3


Q ss_pred             CC-C-CEEEe
Q 046424          258 PK-G-QAIFM  265 (266)
Q Consensus       258 P~-~-D~~~l  265 (266)
                      +. . |+|+.
T Consensus       326 ~~~~fD~Iv~  335 (544)
T 3khk_A          326 PDLRADFVMT  335 (544)
T ss_dssp             TTCCEEEEEE
T ss_pred             ccccccEEEE
Confidence            33 3 88874

>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A

Probab=90.78  E-value=0.046  Score=40.24  Aligned_cols=46  Identities=15%  Similarity=0.257  Sum_probs=39.2

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCC----CCCCCCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLP----TNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~----~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +..|+..|...+  +.|..+||+.++    +    ++..+.++|+-|...|+|...
T Consensus        12 ~~~vL~~l~~~~--~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~   61 (123)
T 1okr_A           12 EWEVMNIIWMKK--YASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRK   61 (123)
T ss_dssp             HHHHHHHHHHHS--SEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHhCC--CcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEE
Confidence            445666676655  899999999999    6    788999999999999999976

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=90.73  E-value=0.68  Score=39.46  Aligned_cols=35  Identities=14%  Similarity=0.088  Sum_probs=26.9

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL  233 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl  233 (266)
                      ++...+|||+|||.|.++.-+++..|-.+++.+|+
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dV  106 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTL  106 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEE
Confidence            55667999999999999998888766545444444

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=90.58  E-value=0.29  Score=43.44  Aligned_cols=65  Identities=22%  Similarity=0.348  Sum_probs=43.4

Q ss_pred             CCCceEEEecCCccHHHHHHHHH----------------CCCCeEEEeechH-----HHhhCCC---CCC---ceEEecc
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSK----------------YPQLRGINFDLPH-----VLKHAPS---CPG---VEHVGGD  252 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~----------------~P~l~~~v~Dlp~-----vi~~a~~---~~r---i~~~~gD  252 (266)
                      .+.-+|+|+||++|..+..++..                .|+++++.-|||.     +......   ..+   +.-++|.
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS  129 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence            35678999999999755443332                6788889999983     3333321   012   4557899


Q ss_pred             CCC-CCCCC--CEEE
Q 046424          253 MFV-EVPKG--QAIF  264 (266)
Q Consensus       253 ~f~-~~P~~--D~~~  264 (266)
                      |+. -+|.+  |+++
T Consensus       130 Fy~rlfp~~S~d~v~  144 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIH  144 (359)
T ss_dssp             SSSCCSCTTCBSCEE
T ss_pred             hhhccCCCCceEEEE
Confidence            998 68876  7664

>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}

Probab=90.48  E-value=0.34  Score=36.75  Aligned_cols=53  Identities=15%  Similarity=0.223  Sum_probs=39.4

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS  112 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s  112 (266)
                      ..|.++||+.+|+    ++..+.+++.-|...|+++.......+|.-...|.++|+-
T Consensus        51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~  103 (135)
T 2v79_A           51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLW  103 (135)
T ss_dssp             SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHH
T ss_pred             CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHH
Confidence            6899999999999    9999999999999999999742111112112456666543

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=90.44  E-value=0.27  Score=42.08  Aligned_cols=43  Identities=19%  Similarity=0.027  Sum_probs=33.1

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP  234 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp  234 (266)
                      .+.+.+- +....+|||+|||.|.++.-+++..|-..++.+|+-
T Consensus        81 ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG  123 (282)
T 3gcz_A           81 WMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLG  123 (282)
T ss_dssp             HHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred             HHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEec
Confidence            4445553 666779999999999999998888776666777773

>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61

Probab=90.40  E-value=0.33  Score=35.65  Aligned_cols=73  Identities=19%  Similarity=0.222  Sum_probs=53.5

Q ss_pred             HHHHHHhhChhHHHhhcCCCCCCHHHHHhhCC--------CCCCCCc-chHHHHHHHHhcCCccccccccCCCCccccce
Q 046424           36 TIKSATELGLLEIMAKASPTQLSSSEIASQLP--------TNNKKAP-IILDRMLRLLASYSFLTCNLVSNKDGSVQRLY  106 (266)
Q Consensus        36 ~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~--------~~~~~~~-~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y  106 (266)
                      .+....++-|+..|...   |.+..+|++.+.        +    ++ ..+.+.|+-|...|+|+...... +|...-.|
T Consensus         9 ~~~~~~~~~IL~~L~~~---~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~-~~~~r~~Y   80 (118)
T 2esh_A            9 FRGWWLASTILLLVAEK---PSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTT-VSPPRKIY   80 (118)
T ss_dssp             HHHHHHHHHHHHHHHHS---CBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECS-SSSCEEEE
T ss_pred             cccchHHHHHHHHHHcC---CCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecC-CCCCceEE
Confidence            34455667788888763   899999999883        6    88 89999999999999998763110 12123458


Q ss_pred             ecchhccccc
Q 046424          107 GLTPVSKYFV  116 (266)
Q Consensus       107 ~~t~~s~~l~  116 (266)
                      ++|+.+..++
T Consensus        81 ~LT~~G~~~l   90 (118)
T 2esh_A           81 RITPQGKLYL   90 (118)
T ss_dssp             EECHHHHHHH
T ss_pred             EEChHHHHHH
Confidence            9999887554

>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28

Probab=90.25  E-value=0.17  Score=42.58  Aligned_cols=70  Identities=14%  Similarity=0.149  Sum_probs=51.2

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .+..|+..|...++.++|..|||+.+++    ++..+.++++-|...|+|+..+ +..|++ .-...+|+.|..+.
T Consensus       159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~-~~~DrR-~~~i~LT~~G~~~~  228 (250)
T 1p4x_A          159 VEFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER-STEDER-KILIHMDDAQQDHA  228 (250)
T ss_dssp             HHHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE-CSSSTT-CEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeC-CCCCCC-eEEEEECHHHHHHH
Confidence            3455777887654225999999999999    9999999999999999999863 112222 23366777666544

>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A

Probab=90.23  E-value=0.22  Score=40.12  Aligned_cols=49  Identities=12%  Similarity=0.251  Sum_probs=42.9

Q ss_pred             HHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           38 KSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        38 ~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ....+..|+..|.. |  +.|..|||+.+|+    ++..+.+.++.|...|++...
T Consensus        18 ~d~~~~~IL~~L~~-~--~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~   66 (192)
T 1uly_A           18 LEDTRRKILKLLRN-K--EMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK   66 (192)
T ss_dssp             HSHHHHHHHHHHTT-C--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CCHHHHHHHHHHHc-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            34566778888974 5  8999999999999    999999999999999999875

>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*

Probab=90.18  E-value=0.27  Score=36.16  Aligned_cols=76  Identities=14%  Similarity=0.214  Sum_probs=54.4

Q ss_pred             HHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccc
Q 046424           34 PMTIKSATELGLLEIMAKASPTQLSSSEIASQL--------PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRL  105 (266)
Q Consensus        34 ~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~--------~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~  105 (266)
                      ++.++-..++-|+..|.+.   |.+--+|.+.+        ++    ++..+.+.|+-|...|+|+.......+|...-.
T Consensus         6 ~~~~~g~l~~~IL~~L~~~---~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~   78 (116)
T 3f8b_A            6 KEMLRAQTNVILLNVLKQG---DNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKY   78 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHC---CBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEE
T ss_pred             HHHHhchHHHHHHHHHHhC---CCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceE
Confidence            4455566777788888774   89999999887        56    899999999999999999965211011222445


Q ss_pred             eecchhccccc
Q 046424          106 YGLTPVSKYFV  116 (266)
Q Consensus       106 y~~t~~s~~l~  116 (266)
                      |++|+.++..+
T Consensus        79 Y~LT~~G~~~l   89 (116)
T 3f8b_A           79 YRLTEIGHENM   89 (116)
T ss_dssp             EEECHHHHHHH
T ss_pred             EEECHHHHHHH
Confidence            89998887544

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=89.49  E-value=0.23  Score=44.13  Aligned_cols=77  Identities=14%  Similarity=0.241  Sum_probs=51.7

Q ss_pred             hHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccC-CCCccccceecch
Q 046424           32 VLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSN-KDGSVQRLYGLTP  110 (266)
Q Consensus        32 ~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~-~~~~~~~~y~~t~  110 (266)
                      ..+.+++..-+..|++.|. .+  ++|..|||+.+|+    +..-+.++++-|...|++.+..... ..|+..-.|++++
T Consensus        12 ~~~~~~~~~~~~~il~~l~-~~--~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~   84 (380)
T 2hoe_A           12 HMPKSVRAENISRILKRIM-KS--PVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISP   84 (380)
T ss_dssp             ----------CCCSHHHHH-HS--CBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECG
T ss_pred             cCchhHHHHHHHHHHHHHH-cC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEcc
Confidence            4566777778888999999 76  9999999999999    9999999999999999999863111 1133344477777


Q ss_pred             hcccc
Q 046424          111 VSKYF  115 (266)
Q Consensus       111 ~s~~l  115 (266)
                      -..++
T Consensus        85 ~~~~~   89 (380)
T 2hoe_A           85 NCAYV   89 (380)
T ss_dssp             GGCEE
T ss_pred             CCCeE
Confidence            65543

>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*

Probab=89.30  E-value=0.16  Score=38.81  Aligned_cols=68  Identities=16%  Similarity=0.236  Sum_probs=40.7

Q ss_pred             hhChhHHHhhcCC---CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASP---TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~---~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      +..++..|...++   +++|..|||+.+++    ++..+.++++-|...|+|+...  +.|++ .-...+|+.|..++
T Consensus        35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~~--~~DrR-~~~v~LT~~G~~~~  105 (148)
T 4fx0_A           35 QFSTLAVISLSEGSAGIDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVMA--GADAR-CKRIELTAKGRAAL  105 (148)
T ss_dssp             HHHHHHHHHC---------CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC--------------CCBCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeC--CCCCC-eeEEEECHHHHHHH
Confidence            3345566654321   26899999999999    9999999999999999996431  22222 22356666665443

>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36

Probab=89.21  E-value=0.17  Score=38.01  Aligned_cols=44  Identities=18%  Similarity=0.217  Sum_probs=37.6

Q ss_pred             ChhHHHh-hcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           44 GLLEIMA-KASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        44 glfd~L~-~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .++..|. ..+  ++|..|||+.+|+    +...+.++++-|...|+++..
T Consensus        30 ~il~~L~~~~~--~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~   74 (152)
T 1ku9_A           30 AVYAILYLSDK--PLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV   74 (152)
T ss_dssp             HHHHHHHHCSS--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHcCC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            3566664 234  8999999999999    999999999999999999975

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=88.90  E-value=0.51  Score=40.71  Aligned_cols=73  Identities=14%  Similarity=0.110  Sum_probs=47.2

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHh----hCCCC--CCceEEec-cCCCCCCC-CCE
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLK----HAPSC--PGVEHVGG-DMFVEVPK-GQA  262 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~----~a~~~--~ri~~~~g-D~f~~~P~-~D~  262 (266)
                      .+.+.+. +.....|||+||+.|.++.-++....-.+++.+|+-..--    ..+..  .-|+++.+ |++.--|. .|+
T Consensus        85 ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~D~  163 (321)
T 3lkz_A           85 WLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCDT  163 (321)
T ss_dssp             HHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCCSE
T ss_pred             HHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCCCE
Confidence            3444444 5566799999999999999777776655789999843210    01111  34888888 87762222 477


Q ss_pred             EE
Q 046424          263 IF  264 (266)
Q Consensus       263 ~~  264 (266)
                      ++
T Consensus       164 iv  165 (321)
T 3lkz_A          164 LL  165 (321)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0

Probab=88.88  E-value=0.3  Score=36.02  Aligned_cols=76  Identities=17%  Similarity=0.200  Sum_probs=54.3

Q ss_pred             HHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCcccccee
Q 046424           34 PMTIKSATELGLLEIMAKASPTQLSSSEIASQL------PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYG  107 (266)
Q Consensus        34 ~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~------~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~  107 (266)
                      ++.++-..++-|+..|...   |.+--+|++.+      ++    ++..+...|+-|...|+++.......+|...-.|+
T Consensus         7 ~~l~~g~l~~~IL~lL~~~---p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~   79 (116)
T 3hhh_A            7 TELLKGILEGLVLAIIQRK---ETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYR   79 (116)
T ss_dssp             HHHHTTHHHHHHHHHHHHS---CBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEE
T ss_pred             HHHHhhhHHHHHHHHHhcC---CCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence            3445555666678888764   89999999987      57    89999999999999999986521111122234599


Q ss_pred             cchhccccc
Q 046424          108 LTPVSKYFV  116 (266)
Q Consensus       108 ~t~~s~~l~  116 (266)
                      +|+.++..+
T Consensus        80 lT~~G~~~l   88 (116)
T 3hhh_A           80 LTSSGEAEL   88 (116)
T ss_dssp             ECHHHHHHH
T ss_pred             ECHHHHHHH
Confidence            998887544

>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}

Probab=88.74  E-value=0.16  Score=37.47  Aligned_cols=77  Identities=16%  Similarity=0.218  Sum_probs=55.7

Q ss_pred             HHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCC------CCCCCCcchHHHHHHHHhcCCccccccccCCCCcccccee
Q 046424           34 PMTIKSATELGLLEIMAKASPTQLSSSEIASQLP------TNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYG  107 (266)
Q Consensus        34 ~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~------~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~  107 (266)
                      ++.++-..++-|+..|...   |.+.-+|++.+.      +    ++..+.+.|+-|...|+++........|...-.|+
T Consensus         8 ~~l~~g~l~~~IL~lL~~~---p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~   80 (117)
T 3elk_A            8 ERILHGLITLYILKELVKR---PMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYH   80 (117)
T ss_dssp             CHHHHHHHHHHHHHHHHHS---CEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEE
T ss_pred             HHHHhhHHHHHHHHHHHcC---CCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence            3455566677788888764   899999999886      6    78899999999999999996521011122234699


Q ss_pred             cchhcccccC
Q 046424          108 LTPVSKYFVP  117 (266)
Q Consensus       108 ~t~~s~~l~~  117 (266)
                      +|+.++..+.
T Consensus        81 lT~~G~~~l~   90 (117)
T 3elk_A           81 ITDAGKKFLC   90 (117)
T ss_dssp             ECHHHHHHHH
T ss_pred             ECHHHHHHHH
Confidence            9998875553

>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19

Probab=88.72  E-value=0.24  Score=33.56  Aligned_cols=51  Identities=6%  Similarity=-0.036  Sum_probs=39.9

Q ss_pred             HHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecc
Q 046424           47 EIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLT  109 (266)
Q Consensus        47 d~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t  109 (266)
                      +.|.+++  ..|+.+||.++|+    +...+.|+|.-|...|.|....     | ....|..+
T Consensus        22 ~~L~~~~--~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~~-----~-~PP~W~~~   72 (75)
T 1sfu_A           22 LSLNTND--YTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMVP-----S-NPPKWFKN   72 (75)
T ss_dssp             HTSCTTC--EECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC-----C-SSCEEEEC
T ss_pred             HhCCCCc--chHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecCC-----C-CCCCccCC
Confidence            3455542  5999999999999    9999999999999999998762     1 15566655

>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}

Probab=88.24  E-value=0.23  Score=31.60  Aligned_cols=46  Identities=13%  Similarity=0.172  Sum_probs=40.5

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTC   92 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~   92 (266)
                      |-.|++.+.++| +-+.++.+++..|+    +.+.+..+|+-|...|++.-
T Consensus        12 e~~lL~yIr~sG-GildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l   57 (59)
T 2xvc_A           12 ERELLDYIVNNG-GFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV   57 (59)
T ss_dssp             HHHHHHHHHHTT-SEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHcC-CEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence            445788888876 48999999999999    99999999999999999874

>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*

Probab=87.98  E-value=0.68  Score=35.32  Aligned_cols=48  Identities=13%  Similarity=0.176  Sum_probs=40.5

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQL-----PTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~-----~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+.-|++.|.+.+ .+.|++||.+.+     ++    +..-+.|.|+.|...|++.+.
T Consensus        23 qR~~Il~~L~~~~-~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~   75 (145)
T 2fe3_A           23 QRHAILEYLVNSM-AHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKEL   75 (145)
T ss_dssp             HHHHHHHHHHHCS-SCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEE
Confidence            4455889997643 389999999999     56    888999999999999999986

>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6

Probab=87.69  E-value=0.32  Score=34.62  Aligned_cols=50  Identities=20%  Similarity=0.228  Sum_probs=38.3

Q ss_pred             HHHHhhChhH-HHhhcCCCCC-CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           38 KSATELGLLE-IMAKASPTQL-SSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        38 ~~a~~lglfd-~L~~~g~~~~-t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .-.+...|.+ .+..+.  .+ |..+||+.+|+    +...+++.|+.|...|+++..
T Consensus        17 ~~~i~~~I~~~~l~~g~--~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~   68 (102)
T 1v4r_A           17 ATHFRTLIKSGELAPGD--TLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSR   68 (102)
T ss_dssp             HHHHHHHTTTTSCCTTS--BCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEE
T ss_pred             HHHHHHHHHhCCCCCcC--CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            3334444554 333332  56 99999999999    999999999999999999876

>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1

Probab=87.58  E-value=0.38  Score=38.34  Aligned_cols=58  Identities=16%  Similarity=0.292  Sum_probs=46.1

Q ss_pred             HHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCc-cccccccCCCCccccceecchh
Q 046424           40 ATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSF-LTCNLVSNKDGSVQRLYGLTPV  111 (266)
Q Consensus        40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~-l~~~~~~~~~~~~~~~y~~t~~  111 (266)
                      -....|...|.+.+ +++|..|||+.+|+    +.+-+.|-+..|...|+ +...         .+.|.+++.
T Consensus        21 ~R~~~Il~~L~~~~-~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~---------~~Gy~l~~~   79 (187)
T 1j5y_A           21 ERLKSIVRILERSK-EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT---------PRGYVLAGG   79 (187)
T ss_dssp             HHHHHHHHHHHHCS-SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE---------TTEEECCTT
T ss_pred             HHHHHHHHHHHHcC-CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE---------CCEEEECCc
Confidence            45567888997643 27999999999999    99999999999999999 6643         344777653

>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}

Probab=87.57  E-value=0.39  Score=36.00  Aligned_cols=50  Identities=14%  Similarity=0.168  Sum_probs=42.0

Q ss_pred             HHHhhChhHHHhhcCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           39 SATELGLLEIMAKASPTQLSSSEIASQL-----PTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        39 ~a~~lglfd~L~~~g~~~~t~~elA~~~-----~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +-.+.-|++.|.+.+ ++.|++||.+.+     ++    +..-+.|.|+.|...|++.+.
T Consensus        10 T~qR~~Il~~l~~~~-~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~   64 (131)
T 2o03_A           10 TRQRAAISTLLETLD-DFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTL   64 (131)
T ss_dssp             HHHHHHHHHHHHHCC-SCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred             CHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEE
Confidence            345667888887653 389999999998     66    888999999999999999976

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=87.12  E-value=0.66  Score=40.25  Aligned_cols=75  Identities=19%  Similarity=0.190  Sum_probs=51.4

Q ss_pred             HHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCC-CCeEEEeechHHHhhCC---------CCCCc
Q 046424          177 FNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLPHVLKHAP---------SCPGV  246 (266)
Q Consensus       177 f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp~vi~~a~---------~~~ri  246 (266)
                      ++..+...+...-..+.....  .+...||++|||-=..+.++.  +| +++++-+|+|.|++..+         ..++.
T Consensus        80 ~~~~~~~Rt~~~d~~v~~~~~--~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~  155 (310)
T 2uyo_A           80 MRSYQAVRTNFFDTYFNNAVI--DGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADR  155 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--TTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--hCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCe
Confidence            444555555443222222221  356789999999999877775  35 48899999999988633         23678


Q ss_pred             eEEeccCCC
Q 046424          247 EHVGGDMFV  255 (266)
Q Consensus       247 ~~~~gD~f~  255 (266)
                      .+++.|+.+
T Consensus       156 ~~v~~Dl~d  164 (310)
T 2uyo_A          156 REVPIDLRQ  164 (310)
T ss_dssp             EEEECCTTS
T ss_pred             EEEecchHh
Confidence            999999986

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=86.95  E-value=2.7  Score=37.58  Aligned_cols=63  Identities=13%  Similarity=0.179  Sum_probs=40.7

Q ss_pred             hhHHHHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHH---C----CCCeEEEeechHHHh
Q 046424          171 ERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSK---Y----PQLRGINFDLPHVLK  238 (266)
Q Consensus       171 p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~---~----P~l~~~v~Dlp~vi~  238 (266)
                      |++...|-+.++.+-..   .| .... ....-.||++|+|+|.++..+++.   +    ..++.+++|..+...
T Consensus        55 peis~~FGe~la~~~~~---~w-~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr  124 (387)
T 1zkd_A           55 PEISQMFGELLGLWSAS---VW-KAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR  124 (387)
T ss_dssp             HHHCHHHHHHHHHHHHH---HH-HHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred             CchHHHHHHHHHHHHHH---HH-HHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHH
Confidence            56666776666554321   11 2222 334568999999999999988865   3    345788898865444

>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2

Probab=86.89  E-value=0.31  Score=40.19  Aligned_cols=53  Identities=17%  Similarity=0.189  Sum_probs=43.8

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      +.|..++|+.+++    +...+.+.++.|...|+|++.+..   .  ...+.+|+.|..+..
T Consensus        27 ~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~---R--~~~v~LT~~G~~l~~   79 (230)
T 3cta_A           27 YLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTK---R--GQILNITEKGLDVLY   79 (230)
T ss_dssp             ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEET---T--EEEEEECHHHHHHHH
T ss_pred             CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcC---C--eEEEEECHHHHHHHH
Confidence            6899999999999    999999999999999999986210   0  456888988876664

>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1

Probab=86.84  E-value=0.32  Score=44.40  Aligned_cols=68  Identities=22%  Similarity=0.234  Sum_probs=49.3

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYF  115 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l  115 (266)
                      +..|+..|.+.+.+++|..|||+.+++    +...+.|+++-|...|+|++.+. ..|.| .-...+|+.++.+
T Consensus       406 q~~vl~~l~~~~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~~-~~D~R-~~~i~lT~~g~~~  473 (487)
T 1hsj_A          406 EIYILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRS-LQDER-TVIVYVTDTQKAN  473 (487)
T ss_dssp             HHHHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEEC-CSSSS-CCEEECCSSHHHH
T ss_pred             HHHHHHHHHhCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCC-CCCCC-eEEEEECHHHHHH
Confidence            345777887761128999999999999    99999999999999999998631 12221 2335666655543

>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61

Probab=86.42  E-value=0.28  Score=37.70  Aligned_cols=74  Identities=14%  Similarity=0.229  Sum_probs=52.1

Q ss_pred             HHHHHHhhChhHHHhhcCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCcccccee
Q 046424           36 TIKSATELGLLEIMAKASPTQLSSSEIASQL--------PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYG  107 (266)
Q Consensus        36 ~L~~a~~lglfd~L~~~g~~~~t~~elA~~~--------~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~  107 (266)
                      .+.--.++-|+..|.+ +  +.+..||++.+        ++    ++..+.+.|+-|...|+|+.......++...-.|+
T Consensus        37 ~~~g~~~~~IL~~L~~-~--~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~  109 (145)
T 1xma_A           37 VIRGYVDTIILSLLIE-G--DSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYR  109 (145)
T ss_dssp             SGGGTHHHHHHHHHHH-C--CEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEE
T ss_pred             HhcCcHHHHHHHHHHh-C--CCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEE
Confidence            3344466777778876 3  89999988887        57    89999999999999999986531100111234589


Q ss_pred             cchhccccc
Q 046424          108 LTPVSKYFV  116 (266)
Q Consensus       108 ~t~~s~~l~  116 (266)
                      +|+.++.++
T Consensus       110 LT~~G~~~l  118 (145)
T 1xma_A          110 ITPEGIKYY  118 (145)
T ss_dssp             ECHHHHHHH
T ss_pred             ECHHHHHHH
Confidence            998877554

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=86.00  E-value=0.54  Score=37.69  Aligned_cols=41  Identities=20%  Similarity=0.140  Sum_probs=34.9

Q ss_pred             HHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           48 IMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        48 ~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+.+.| .|.|..|||+.+|+    +...+.+.|+.|...|++...
T Consensus        17 ~~~~~g-~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~   57 (196)
T 3k2z_A           17 FIEKNG-YPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK   57 (196)
T ss_dssp             HHHHHS-SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred             HHHHhC-CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence            344444 38999999999999    777899999999999999976

>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.89  E-value=0.31  Score=34.67  Aligned_cols=49  Identities=14%  Similarity=0.183  Sum_probs=43.4

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      -|.-|+..+.++|+.+++..||+.++++    +...+.++|..|...+++...
T Consensus        38 ~E~lVy~~I~~aGn~GIw~kdL~~~tnL----~~~~vtkiLK~LE~k~lIK~V   86 (95)
T 2yu3_A           38 QEKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV   86 (95)
T ss_dssp             HHHHHHHHHHHHTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCEEEe
Confidence            4556788888877668999999999999    999999999999999999976

>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}

Probab=85.38  E-value=1.2  Score=28.31  Aligned_cols=51  Identities=20%  Similarity=0.230  Sum_probs=42.3

Q ss_pred             hHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           46 LEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        46 fd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +..|.+-. .++|+.|+|+..+.    +....+..|..|.+.|-+.+.         ..+|++.|
T Consensus         9 Lall~s~~-QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR---------sSRYrlkp   59 (68)
T 3i71_A            9 LALLTSVR-QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR---------SSRYRLKP   59 (68)
T ss_dssp             HHHHHHCT-TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------CCEEEECC
T ss_pred             HHHHHHHh-ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh---------ccccccCc
Confidence            44555433 37999999999999    888999999999999999987         57898876

>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A

Probab=85.15  E-value=0.35  Score=39.93  Aligned_cols=48  Identities=15%  Similarity=0.130  Sum_probs=41.3

Q ss_pred             CHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           58 SSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        58 t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      +..+||+.+++    +...+.++++-|...|+++...        +..+.+|+.+..+..
T Consensus        26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~~   73 (230)
T 1fx7_A           26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVAG--------DRHLELTEKGRALAI   73 (230)
T ss_dssp             CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHHHHHHHH
T ss_pred             cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC--------CccEEECHHHHHHHH
Confidence            44999999999    9999999999999999999862        457899998876653

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=85.11  E-value=1.3  Score=37.86  Aligned_cols=39  Identities=18%  Similarity=0.152  Sum_probs=31.5

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAP  241 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~  241 (266)
                      ....|+|++||+|..+.++++.  +.+++++|+.+ .++.++
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~  274 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAK  274 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence            4579999999999999998886  46899999964 555444

>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A

Probab=85.03  E-value=0.32  Score=35.72  Aligned_cols=51  Identities=12%  Similarity=0.210  Sum_probs=40.6

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|+..|.+.|  +.|..|||+.++...+.++.-+.++++-|...|+|...
T Consensus        11 ~q~~vL~~L~~~~--~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~   61 (126)
T 1sd4_A           11 AEWDVMNIIWDKK--SVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY   61 (126)
T ss_dssp             HHHHHHHHHHHSS--SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHhcC--CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence            3556777777766  89999999999741111688999999999999999986

>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0

Probab=84.80  E-value=0.5  Score=34.10  Aligned_cols=71  Identities=18%  Similarity=0.226  Sum_probs=50.2

Q ss_pred             HHHHhhChhHHHhhcCCCCCCHHHHHhh----CCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424           38 KSATELGLLEIMAKASPTQLSSSEIASQ----LPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK  113 (266)
Q Consensus        38 ~~a~~lglfd~L~~~g~~~~t~~elA~~----~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~  113 (266)
                      +-..++-|+..|...   |.+..+|++.    +++    ++..+.++|+-|...|+|+..... .+|...-.|++|+.+.
T Consensus         7 ~g~l~~~IL~~L~~~---~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~-~~~r~r~~y~LT~~G~   78 (108)
T 3l7w_A            7 ALLIEYLILAIVSKH---DSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQE-HQGRRRKYYHLTDSGE   78 (108)
T ss_dssp             HHHHHHHHHHHHHHS---CEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEE-ETTEEEEEEEECHHHH
T ss_pred             HHHHHHHHHHHHHcC---CCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeec-CCCCcceEEEECHHHH
Confidence            334566677788764   7888777776    578    999999999999999999975311 1222133488998877


Q ss_pred             ccc
Q 046424          114 YFV  116 (266)
Q Consensus       114 ~l~  116 (266)
                      ..+
T Consensus        79 ~~l   81 (108)
T 3l7w_A           79 KHL   81 (108)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61

Probab=84.75  E-value=0.68  Score=36.57  Aligned_cols=69  Identities=13%  Similarity=0.274  Sum_probs=48.9

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhC--------CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQL--------PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS  112 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~--------~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s  112 (266)
                      .++-|+..|.. +  |.+.-||++.+        ++    ++..+.+.|+-|...|+|+........+...-.|++|+.|
T Consensus         3 l~~~iL~lL~~-~--~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G   75 (179)
T 1yg2_A            3 LPHVILTVLST-R--DATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAG   75 (179)
T ss_dssp             HHHHHHHHHHH-C--CBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHH
T ss_pred             hHHHHHHHHhc-C--CCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHH
Confidence            34557778876 4  99999999998        46    8899999999999999999652110011113469999998


Q ss_pred             cccc
Q 046424          113 KYFV  116 (266)
Q Consensus       113 ~~l~  116 (266)
                      +..+
T Consensus        76 ~~~l   79 (179)
T 1yg2_A           76 RSAL   79 (179)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8543

>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39

Probab=84.64  E-value=0.46  Score=35.79  Aligned_cols=51  Identities=12%  Similarity=0.107  Sum_probs=40.4

Q ss_pred             HhhChhHHHhh-cCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAK-ASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~-~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|+.+|.. .+  ++|..||++.++...+.+..-+.++|+-|...|+|...
T Consensus        10 ~e~~vL~~L~~~~~--~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~   61 (138)
T 2g9w_A           10 LERAVMDHLWSRTE--PQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI   61 (138)
T ss_dssp             HHHHHHHHHHTCSS--CEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHhcCC--CCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence            45567777876 35  89999999999821011888999999999999999986

>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}

Probab=84.62  E-value=0.37  Score=35.40  Aligned_cols=69  Identities=14%  Similarity=0.175  Sum_probs=49.4

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCC------CCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLP------TNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKY  114 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~------~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~  114 (266)
                      .++-|+..|...   |.+.-+|++.+.      +    ++..+.+.|+-|...|+|+.......+|...-.|++|+.++.
T Consensus        10 l~~~IL~~L~~~---~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~   82 (115)
T 4esb_A           10 LEGCILYIISQE---EVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLE   82 (115)
T ss_dssp             HHHHHHHHHHHS---CEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHH
T ss_pred             HHHHHHHHHHcC---CCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHH
Confidence            345567777764   899999998874      6    899999999999999999865211111222345999988875


Q ss_pred             cc
Q 046424          115 FV  116 (266)
Q Consensus       115 l~  116 (266)
                      .+
T Consensus        83 ~l   84 (115)
T 4esb_A           83 QL   84 (115)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8

Probab=84.28  E-value=0.2  Score=44.17  Aligned_cols=61  Identities=8%  Similarity=0.075  Sum_probs=0.0

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      +..|+..|...+  ++|..|||+.+++    ++.-++|.|+.|...|+++..         .....+|+.++.+..
T Consensus        22 ~~~iL~~l~~~~--~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~~---------~~gi~LT~~G~~~~~   82 (345)
T 2o0m_A           22 RFQILRNIYWMQ--PIGRRSLSETMGI----TERVLRTETDVLKQLNLIEPS---------KSGMTLTERGLEVYQ   82 (345)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---------ecceEEcHHHHHHHH
Confidence            456777887766  8999999999999    999999999999999999854         223667777665553

>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}

Probab=83.92  E-value=1  Score=34.02  Aligned_cols=65  Identities=14%  Similarity=0.136  Sum_probs=46.5

Q ss_pred             HHhhChhHHHhhcCCCCCCHHHHHhhCCCCC-CCCcchHHHHHHHHhcCCccccccccCCCCccccceecc
Q 046424           40 ATELGLLEIMAKASPTQLSSSEIASQLPTNN-KKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLT  109 (266)
Q Consensus        40 a~~lglfd~L~~~g~~~~t~~elA~~~~~~~-~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t  109 (266)
                      ..+.-|++.|.+.+ ++.|++||.+.+.-.. ..+..-+.|.|..|...|++.+..  ..+|  ..+|..+
T Consensus        14 ~qR~~Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~--~~~g--~~~Y~~~   79 (139)
T 3mwm_A           14 RQRAAVSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLR--TAEG--ESVYRRC   79 (139)
T ss_dssp             HHHHHHHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEE--CTTS--CEEEECC
T ss_pred             HHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEE--cCCC--ceEEEEC
Confidence            35566889997753 3899999999983111 117888999999999999999863  1122  4567664

>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=83.68  E-value=0.92  Score=40.92  Aligned_cols=72  Identities=11%  Similarity=0.116  Sum_probs=52.9

Q ss_pred             HHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccc-cc-CCCCccccceecchhccc
Q 046424           37 IKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNL-VS-NKDGSVQRLYGLTPVSKY  114 (266)
Q Consensus        37 L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~-~~-~~~~~~~~~y~~t~~s~~  114 (266)
                      ++..-+..|+..|...+  ++|..|||+.+|+    +..-+.++++-|...|++.+.. .. +..|+..-.|++++-+.+
T Consensus        36 ~r~~n~~~il~~l~~~~--~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~s~~GR~~~~l~~~~~~~~  109 (429)
T 1z05_A           36 IKQINAGRVYKLIDQKG--PISRIDLSKESEL----APASITKITRELIDAHLIHETTVQEAISRGRPAVGLQTNNLGWQ  109 (429)
T ss_dssp             HHHHHHHHHHHHHHHHC--SBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECHHHHHHHTSCCEEEEECCTTEE
T ss_pred             HHHHHHHHHHHHHHHcC--CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccccCCCCCCCCCeEEEECCCCCE
Confidence            44445556889998876  9999999999999    9999999999999999999852 00 001332344777765443

>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}

Probab=83.30  E-value=0.66  Score=35.62  Aligned_cols=44  Identities=16%  Similarity=0.102  Sum_probs=40.1

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      -.|++.|. .|  |.|..+||+++|+    +-....-.|..|.-.|++.+.
T Consensus        14 ~~ILE~Lk-~G--~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~V   57 (165)
T 2vxz_A           14 RDILALLA-DG--CKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRV   57 (165)
T ss_dssp             HHHHHHHT-TC--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEE
T ss_pred             HHHHHHHH-hC--CccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEE
Confidence            34788898 56  9999999999999    999999999999999999987

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=83.11  E-value=1  Score=38.45  Aligned_cols=33  Identities=12%  Similarity=-0.125  Sum_probs=27.4

Q ss_pred             CCceEEEecCCccHHHHHHHHHC-----CCCeEEEeec
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKY-----PQLRGINFDL  233 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~-----P~l~~~v~Dl  233 (266)
                      .+..||+||...|..++.+++..     |+-+++++|.
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dt  143 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADS  143 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEEC
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEEC
Confidence            46899999999999888876654     5888999994

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A

Probab=83.10  E-value=1  Score=40.15  Aligned_cols=72  Identities=8%  Similarity=0.094  Sum_probs=49.8

Q ss_pred             HHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccccc--CCCCccccceecchhccc
Q 046424           37 IKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVS--NKDGSVQRLYGLTPVSKY  114 (266)
Q Consensus        37 L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~--~~~~~~~~~y~~t~~s~~  114 (266)
                      ++..-+..|+..|...+  ++|..|||+.+|+    +..-+.++++-|...|++.+....  +..|+..-.|++++-..+
T Consensus        13 ~r~~n~~~il~~l~~~~--~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~~~~~~~~~GR~~~~l~~~~~~~~   86 (406)
T 1z6r_A           13 IKQTNAGAVYRLIDQLG--PVSRIDLSRLAQL----APASITKIVHEMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWH   86 (406)
T ss_dssp             HHHHHHHHHHHHHHSSC--SCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC-------------CEEECCTTCE
T ss_pred             HHHhHHHHHHHHHHHcC--CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEeecccCCCCCCCCCeEEEEcCCccE
Confidence            34444455888998876  9999999999999    999999999999999999985211  001333334777765443

>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}

Probab=82.35  E-value=1.1  Score=34.38  Aligned_cols=50  Identities=22%  Similarity=0.344  Sum_probs=42.0

Q ss_pred             HHHhhChhHHHhhcCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           39 SATELGLLEIMAKASPTQLSSSEIASQL-----PTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        39 ~a~~lglfd~L~~~g~~~~t~~elA~~~-----~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +..+.-|++.|.+.+ .+.|++||.+.+     ++    +..-+.|.|+.|...|++.+.
T Consensus        26 T~qR~~IL~~l~~~~-~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~   80 (150)
T 2xig_A           26 SKQREEVVSVLYRSG-THLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVL   80 (150)
T ss_dssp             HHHHHHHHHHHHHCS-SCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEE
Confidence            445566899997753 389999999998     56    888999999999999999976

>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*

Probab=81.53  E-value=1.2  Score=31.96  Aligned_cols=41  Identities=17%  Similarity=0.270  Sum_probs=34.6

Q ss_pred             HHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhc
Q 046424           39 SATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLAS   86 (266)
Q Consensus        39 ~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~   86 (266)
                      .+.++||+..|..+   +.|-.|||+.+|+    +...+.|+-|+|..
T Consensus        44 l~~R~~l~~~L~~g---e~TQREIA~~lGi----S~stISRi~r~L~~   84 (101)
T 1jhg_A           44 LGTRVRIIEELLRG---EMSQRELKNELGA----GIATITRGSNSLKA   84 (101)
T ss_dssp             HHHHHHHHHHHHHC---CSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC---CcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence            34668999999874   7999999999999    99999998877754

>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...

Probab=81.48  E-value=1  Score=36.96  Aligned_cols=50  Identities=12%  Similarity=0.185  Sum_probs=42.6

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      +.+..+||+.+++    ++..+.++++-|...|+++..+        ...+.+|+.|..+..
T Consensus        24 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~~   73 (226)
T 2qq9_A           24 TPLRARIAERLEQ----SGPTVSQTVARMERDGLVVVAS--------DRSLQMTPTGRTLAT   73 (226)
T ss_dssp             CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT--------TSBEEECHHHHHHHH
T ss_pred             CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeC--------CCCeEECHHHHHHHH
Confidence            3456999999999    9999999999999999999862        466999998886654

>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42

Probab=81.47  E-value=1  Score=33.90  Aligned_cols=61  Identities=13%  Similarity=0.304  Sum_probs=44.8

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhC-----CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQL-----PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLT  109 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~-----~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t  109 (266)
                      .+.-|++.|.+.+.++.|++||.+.+     ++    +..-+.|.|+.|...|++.+...  .+|  ..+|.++
T Consensus        19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~--~~~--~~~Y~~~   84 (136)
T 1mzb_A           19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNF--DGG--HAVFELA   84 (136)
T ss_dssp             HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECS--SSS--SCEEEES
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEe--CCC--ceEEEeC
Confidence            34558888876421289999999998     56    88889999999999999997621  112  4567653

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=81.14  E-value=1.9  Score=37.03  Aligned_cols=36  Identities=11%  Similarity=0.111  Sum_probs=30.0

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP  234 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp  234 (266)
                      +....++||+||+.|.++.-++++.+-..++.+|+.
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg  114 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLG  114 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEec
Confidence            567799999999999999999988765566777774

>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}

Probab=80.90  E-value=0.84  Score=43.18  Aligned_cols=59  Identities=8%  Similarity=0.064  Sum_probs=50.2

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhc-----CCccccccccCCCCccccceecchhccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLAS-----YSFLTCNLVSNKDGSVQRLYGLTPVSKY  114 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~-----~g~l~~~~~~~~~~~~~~~y~~t~~s~~  114 (266)
                      -+.-|+..|...+  .+|..+|++.+++    ++..+.+.|+.|..     .|+++..         ++.|.+++....
T Consensus       431 ~~~~iL~~l~~~~--~it~~~la~~l~~----s~~~~~~~L~~L~~~~~~~~glie~~---------g~~y~L~~~~~~  494 (583)
T 3lmm_A          431 RIAIVLYLLFQRP--FITIDVVARGLQS----GKEAARNALEAARQTTVAGAPLIIAH---------DGVWLLGNACRE  494 (583)
T ss_dssp             HHHHHHHHHHHSS--SBCHHHHHHHHTS----CHHHHHHHHHHHHTCEETTEESEEEE---------TTEEEECHHHHH
T ss_pred             hHHHHHHHHHHCC--CcCHHHHHHHhCc----CHHHHHHHHHHHHhhhccccceEEEe---------CCEEEECHHHHH
Confidence            3456888888876  8999999999999    99999999999998     8899976         578999985443

>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2

Probab=80.34  E-value=0.8  Score=37.13  Aligned_cols=48  Identities=23%  Similarity=0.190  Sum_probs=41.8

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      +.+..+||+.+++    +++.++..++-|...|+++..         .+...+|+.+..++
T Consensus        30 ~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~---------~~Gv~LTe~G~~~A   77 (200)
T 2p8t_A           30 PLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK---------QRGHFLTLKGKEIR   77 (200)
T ss_dssp             CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----------CEEECHHHHHHH
T ss_pred             CccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---------CCCeEECHHHHHHH
Confidence            8999999999999    999999999999999999986         35688999887544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	266
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	4e-41
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	3e-40
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	3e-40
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	7e-40
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	2e-37
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	3e-18
d1fp2a1	101	a.4.5.29 (A:8-108) Isoflavone O-methyltransferase	2e-17
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	6e-16
d1tw3a1	85	a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer	5e-10
d1qzza1	92	a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R	5e-09

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  139 bits (352), Expect = 4e-41
 Identities = 87/147 (59%), Positives = 109/147 (74%), Gaps = 1/147 (0%)

Query: 120 DGVSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQ 179
           DGVS++   L+ QD+V M+SW   KDA+L+G +PF KA+ GM  F     D R N +FN+
Sbjct: 1   DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNK 59

Query: 180 SMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKH 239
            M +H+TI MK+ILE Y GFEGL  LVDV GG GA + +IVSKYP ++GINFDLPHV++ 
Sbjct: 60  GMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED 119

Query: 240 APSCPGVEHVGGDMFVEVPKGQAIFMK 266
           APS PGVEHVGGDMFV +PK  A+FMK
Sbjct: 120 APSYPGVEHVGGDMFVSIPKADAVFMK 146

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  137 bits (346), Expect = 3e-40
 Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 2/146 (1%)

Query: 122 VSLAPTLLIIQDQVNMDSWSCAKDALLEGSV-PFMKAHNGMDGFAAAAKDERINNLFNQS 180
           + LAP +  + D     S+   K  + E  +  F     G   +    K+   N  FN +
Sbjct: 1   LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTL-GSGFWDFLDKNPEYNTSFNDA 59

Query: 181 MHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHA 240
           M + + ++   + +    F+GL  +VDV GG G   K I   +P+L+ I FD P V+++ 
Sbjct: 60  MASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL 119

Query: 241 PSCPGVEHVGGDMFVEVPKGQAIFMK 266
                + +VGGDMF  +P   A+ +K
Sbjct: 120 SGSNNLTYVGGDMFTSIPNADAVLLK 145

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  137 bits (345), Expect = 3e-40
 Identities = 62/144 (43%), Positives = 92/144 (63%)

Query: 123 SLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMH 182
            LA     +     +  W   K+A+++  +   K  +G+  +    KD+++N +FN+SM 
Sbjct: 3   YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMV 62

Query: 183 NHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS 242
           +     MK +LEIY GFEG++ LVDV GG G NL+ I+SKYP ++GINFDLP V+++AP 
Sbjct: 63  DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 122

Query: 243 CPGVEHVGGDMFVEVPKGQAIFMK 266
             G+EHVGGDMF  VP+G A+ +K
Sbjct: 123 LSGIEHVGGDMFASVPQGDAMILK 146

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  132 bits (333), Expect = 7e-40
 Identities = 65/104 (62%), Positives = 79/104 (75%), Gaps = 1/104 (0%)

Query: 17  DEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP-TQLSSSEIASQLPTNNKKAPI 75
           DE+  L AM+LAS +VLPM +KSA EL LLEI+AKA P  Q+S  EIASQLPT N  AP+
Sbjct: 4   DEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPV 63

Query: 76  ILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNK 119
           +LDRMLRLLA Y  LTC++ + +DG VQRLYGL  V+KY V N+
Sbjct: 64  MLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  125 bits (316), Expect = 2e-37
 Identities = 50/108 (46%), Positives = 68/108 (62%), Gaps = 4/108 (3%)

Query: 17  DEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP--TQLSSSEIASQLP--TNNKK 72
           ++   L AM L +  V P  + +A +L L EI+AKA+P    +S SEIAS+LP  T +  
Sbjct: 3   EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSD 62

Query: 73  APIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKD 120
            P  LDRMLRLLASYS LT    + +DG  +R+YGL+ V KY VP++ 
Sbjct: 63  LPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES 110

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 79.6 bits (195), Expect = 3e-18
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 3/122 (2%)

Query: 123 SLAPTLLIIQDQVNMD-SWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSM 181
                L +     + D +++   D +  G   +   + G   +   + D  + + F+  M
Sbjct: 4   QQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRY-GRPFWEDLSADVALADSFDALM 62

Query: 182 HNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAP 241
                +  +   + Y  +  +  ++DV GG G  L +I  + P LRG   +L    + A 
Sbjct: 63  SCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERAR 121

Query: 242 SC 243
             
Sbjct: 122 RR 123

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 73.8 bits (181), Expect = 2e-17
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 13  KPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKK 72
           KP+   +   L  +     +  M++K A E+ +  I+       +S S + S L   + K
Sbjct: 2   KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGK-PISLSNLVSILQVPSSK 60

Query: 73  APIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPNKD 120
              +  R++R LA   F             +  Y LT  S+  V   D
Sbjct: 61  IGNV-RRLMRYLAHNGFFEI------ITKEEESYALTVASELLVRGSD 101

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 73.2 bits (178), Expect = 6e-16
 Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 3/145 (2%)

Query: 122 VSLAPTLLIIQDQVNMD-SWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQS 180
            +      + Q     D S++   DA+  G   +   + G   +   A    +   F+  
Sbjct: 2   AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIY-GKPFYEDLAGRPDLRASFDSL 60

Query: 181 MHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHA 240
           +     +        Y  +  +  ++DV GG G    +I  + P +     ++   +  A
Sbjct: 61  LACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTA 119

Query: 241 PSCPGVEHVGGDMFVEVPKGQAIFM 265
            S    E +   + V          
Sbjct: 120 RSYLKDEGLSDRVDVVEGDFFEPLP 144

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 52.9 bits (127), Expect = 5e-10
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 15/99 (15%)

Query: 20  DFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDR 79
           D L  +        PM +++A  L L++ +        +   +A++  T     P  L R
Sbjct: 1   DALRTLIRLGSLHTPMVVRTAATLRLVDHILAG---ARTVKALAARTDTR----PEALLR 53

Query: 80  MLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVPN 118
           ++R L +   L       +D      +  T V +    +
Sbjct: 54  LIRHLVAIGLLE------EDAP--GEFVPTEVGELLADD 84

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 50.1 bits (120), Expect = 5e-09
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 15/106 (14%)

Query: 12  LKPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNK 71
           L+P   + D L  ++     V PM ++ A  L L++ +   +    + + +A +  T+  
Sbjct: 1   LEPTDQDLDVL--LKNLGNLVTPMALRVAATLRLVDHLLAGA---DTLAGLADRTDTH-- 53

Query: 72  KAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP 117
             P  L R++R L     L             R    T +      
Sbjct: 54  --PQALSRLVRHLTVVGVLE------GGEKQGRPLRPTRLGMLLAD 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	266
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.97
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.97
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.96
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.93
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.9
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.79
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.66
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	99.64
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.6
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.6
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.68
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.52
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.42
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.36
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.36
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.35
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.32
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.31
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.22
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.19
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.11
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.1
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.08
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.07
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.06
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.06
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.05
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	97.98
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	97.97
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	97.88
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.87
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.86
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.86
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.82
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.79
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	97.79
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.78
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	97.76
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	97.75
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.73
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.72
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.69
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.68
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.67
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.67
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.65
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.61
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.5
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.5
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.48
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.44
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.44
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.44
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.4
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.4
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.36
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.28
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.23
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.22
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.16
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.13
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.12
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	96.94
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.91
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.9
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.89
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	96.86
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.86
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.79
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	96.78
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	96.64
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	96.59
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.55
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	96.52
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	96.44
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	96.36
d1u2wa1	108	Cadmium efflux system accessory protein CadC {Stap	96.29
d1r1ua_	94	Metal-sensing transcriptional repressor CzrA {Stap	96.24
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	96.11
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	96.09
d1r1ta_	98	SmtB repressor {Cyanobacteria (Synechococcus), pcc	96.02
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	95.87
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	95.83
d2p4wa1	194	Transcriptional regulatory protein PF1790 {Pyrococ	95.81
d1xd7a_	127	Hypothetical protein ywnA {Bacillus subtilis [TaxI	95.79
d1z6ra1	70	Mlc protein N-terminal domain {Escherichia coli [T	95.75
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	95.69
d1lnwa_	141	MexR repressor {Pseudomonas aeruginosa [TaxId: 287	95.6
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	95.56
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	95.53
d2a61a1	139	Transcriptional regulator TM0710 {Thermotoga marit	95.34
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	95.28
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	95.28
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	95.25
d3ctaa1	85	Ta1064 (RFK), N-terminal domain {Thermoplasma acid	95.23
d2etha1	140	Putative transcriptional regulator TM0816 {Thermot	95.22
d2hoea1	62	N-acetylglucosamine kinase {Thermotoga maritima [T	95.17
d1ylfa1	138	Hypothetical protein BC1842 {Bacillus cereus [TaxI	95.15
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	95.12
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	95.12
d3broa1	135	Transcriptional regulator OEOE1854 {Oenococcus oen	95.0
d1ulya_	190	Hypothetical protein PH1932 {Pyrococcus horikoshii	95.0
d1s3ja_	143	Putative transcriptional regulator YusO {Bacillus	94.92
d2bv6a1	136	Transcriptional regulator MgrA {Staphylococcus aur	94.85
d1r7ja_	90	Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu	94.8
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.76
d1sfxa_	109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	94.67
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	94.65
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	94.58
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	94.57
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	94.3
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	94.29
d2hr3a1	145	Probable transcriptional regulator PA3067 {Pseudom	94.26
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	94.24
d1jgsa_	138	Multiple antibiotic resistance repressor, MarR {Es	94.15
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	94.03
d2cg4a1	63	Regulatory protein AsnC {Escherichia coli [TaxId:	94.02
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	93.83
d2frha1	115	Pleiotropic regulator of virulence genes, SarA {St	93.6
d1z91a1	137	Organic hydroperoxide resistance transcriptional r	93.53
d2fbia1	136	Probable transcriptional regulator PA4135 {Pseudom	93.4
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	93.39
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	93.36
d2hzta1	95	Putative transcriptional regulator YtcD {Bacillus	92.99
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	92.74
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	92.72
d1lj9a_	144	Transcriptional regulator SlyA {Enterococcus faeca	92.72
d2fbha1	137	Transcriptional regulator PA3341 {Pseudomonas aeru	92.72
d1p4xa2	125	Staphylococcal accessory regulator A homolog, SarS	92.71
d1hsja1	115	Staphylococcal accessory regulator A homolog, SarR	92.67
d2ev0a1	61	Manganese transport regulator MntR {Bacillus subti	92.55
d2obpa1	81	Putative DNA-binding protein ReutB4095 {Ralstonia	92.37
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	92.33
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	92.32
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	92.31
d1p4xa1	125	Staphylococcal accessory regulator A homolog, SarS	92.28
d1j75a_	57	Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}	91.85
d2isya1	63	Iron-dependent regulator IdeR {Mycobacterium tuber	91.67
d3deua1	140	Transcriptional regulator SlyA {Salmonella typhimu	91.66
d1ku9a_	151	DNA-binding protein Mj223 {Archaeon Methanococcus	91.59
d2fswa1	102	Hypothetical protein PG0823 {Porphyromonas gingiva	91.57
d2fxaa1	162	Protease production regulatory protein Hpr {Bacill	91.51
d2gxba1	59	Z-alpha domain of dsRNA-specific adenosine deamina	91.49
d1z7ua1	108	Hypothetical protein EF0647 {Enterococcus faecalis	91.04
d1dpua_	69	C-terminal domain of RPA32 {Human (Homo sapiens) [	90.74
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	90.72
d1xmka1	73	Z-alpha domain of dsRNA-specific adenosine deamina	90.13
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	89.77
d1bl0a1	54	MarA {Escherichia coli [TaxId: 562]}	89.66
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	89.58
d1yyva1	114	Putative transcriptional regulator YtfH {Salmonell	89.36
d2f2ea1	142	Hypothetical protein PA1607 {Pseudomonas aeruginos	89.08
d1zyba1	73	Probable transcription regulator BT4300, C-termina	88.8
d2fbka1	172	Transcriptional regulator DR1159 {Deinococcus radi	88.69
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	87.87
d2dk5a1	78	DNA-directed RNA polymerase III subunit RPC6, RPO3	86.88
d1q1ha_	88	Transcription factor E/IIe-alpha, N-terminal domai	86.5
d2gaua1	81	Transcriptional regulator PG0396, C-terminal domai	86.03
d1sfua_	70	34L {Yaba-like disease virus, YLDV [TaxId: 132475]	85.97
d2zcwa1	82	Transcriptional regulator TTHA1359, C-terminal dom	85.49
d1d5ya1	54	Rob transcription factor, N-terminal domain {Esche	84.99
d1jhfa1	71	LexA repressor, N-terminal DNA-binding domain {Esc	84.01
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	83.37
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	82.15
d3e5ua1	80	Chlorophenol reduction protein CprK {Desulfitobact	82.08
d1i5za1	69	Catabolite gene activator protein (CAP), C-termina	82.02
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	80.43

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.97  E-value=3.5e-31  Score=225.30  Aligned_cols=144  Identities=59%  Similarity=1.016  Sum_probs=136.0

Q ss_pred             CChHHHHHHhcCchhhhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHHHHHHHhcchhhHHHHHHHccCCCC
Q 046424          122 VSLAPTLLIIQDQVNMDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEG  201 (266)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~  201 (266)
                      .|+.+++.+.+++.+++.|.+|++++|+|+++|+.+| |.++|+|+.++|+..+.|+++|...+....+.+++.++.+++
T Consensus         3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~-G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~   81 (243)
T d1kyza2           3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEG   81 (243)
T ss_dssp             CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHH-SSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSS
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhc-CCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccC
Confidence            5899999998889999999999999999999999999 999999999999999999999999988888889999984467


Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEEeccCCCCCCCCCEEEeC
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK  266 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~~~P~~D~~~lk  266 (266)
                      ..+|||||||+|.++++++++||+++++++|+|+|++.++..+|++++++|||+++|.+|+|+|+
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~  146 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMK  146 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECS
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEE
Confidence            89999999999999999999999999999999999999998899999999999999999999885

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.97  E-value=4.3e-31  Score=224.63  Aligned_cols=143  Identities=44%  Similarity=0.803  Sum_probs=123.3

Q ss_pred             ChHHHHHHhcCchhhhhhhhHHHHHhcCC-chhhhhccCCcchhccccChhHHHHHHHHHHhcchhhHHHHHHHccCCCC
Q 046424          123 SLAPTLLIIQDQVNMDSWSCAKDALLEGS-VPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEG  201 (266)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~L~e~l~~g~-~~f~~~~~g~~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~  201 (266)
                      |+++++.+++.|.++.+|.+|.++++++. ++|+.+| |.++|+|+.+||+..+.|+++|.+.+....+.+++.|+.|++
T Consensus         3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~-G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~   81 (244)
T d1fp1d2           3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH-GVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEG   81 (244)
T ss_dssp             CCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred             cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhc-CCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            78999999989999999999999999865 6799999 899999999999999999999999998888899999987899


Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEEeccCCCCCCCCCEEEeC
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK  266 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~~~P~~D~~~lk  266 (266)
                      ..+|||||||+|.++++++++||++++|++|+|+|++.+...+||++++||||+++|.+|+|+|+
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~  146 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILK  146 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEE
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEe
Confidence            99999999999999999999999999999999999999888899999999999999988999985

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.96  E-value=1.5e-29  Score=215.11  Aligned_cols=142  Identities=29%  Similarity=0.504  Sum_probs=129.4

Q ss_pred             ChHHHHHHhcCchhhhhhhhHHHHHhcC-CchhhhhccCCcchhccccChhHHHHHHHHHHhcchhhHHHHHHH-ccCCC
Q 046424          123 SLAPTLLIIQDQVNMDSWSCAKDALLEG-SVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEI-YKGFE  200 (266)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~L~e~l~~g-~~~f~~~~~g~~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~-~~~~~  200 (266)
                      |+.++++++.+|.++.+|..|+++++++ .++|+.+| |.++|+|+.+||+..+.|+++|...+......+.+. ++ |+
T Consensus         2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~-G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~-~~   79 (244)
T d1fp2a2           2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTL-GSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFV-FD   79 (244)
T ss_dssp             CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHH-SSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHH-HT
T ss_pred             ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhh-CCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhccc-cc
Confidence            5788999888999999999999999987 47899999 999999999999999999999999888765555543 34 78


Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCCCCCceEEeccCCCCCCCCCEEEeC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVPKGQAIFMK  266 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~~~P~~D~~~lk  266 (266)
                      +..+|||||||+|.++++++++||+++++++|+|+|++.+...+||++++||||+++|.+|+|+||
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~  145 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLK  145 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEE
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEE
Confidence            899999999999999999999999999999999999999988899999999999999988999985

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.93  E-value=3.1e-26  Score=195.88  Aligned_cols=143  Identities=18%  Similarity=0.289  Sum_probs=126.9

Q ss_pred             CChHHHHHHhcCchh-hhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHHHHHHHhcchhhHHHHHHHccCCC
Q 046424          122 VSLAPTLLIIQDQVN-MDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFE  200 (266)
Q Consensus       122 ~~~~~~~~~~~~~~~-~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~  200 (266)
                      .++.+++.+...... ..+|.+|.+++|+|.++|+..+ |.++|+|+.++|+..+.|+++|...+....+.+++.+| |+
T Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~~~~~~~-G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~   80 (256)
T d1qzza2           3 AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRY-GRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WS   80 (256)
T ss_dssp             TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHH-SSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CT
T ss_pred             HHHHHHHhhcCchhhhHhhHHHHHHHHHhCCchhhhhh-CCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-Cc
Confidence            467777765432222 3479999999999999999999 99999999999999999999999998888889999999 99


Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEeccCCCCCCCC-CEEEeC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGDMFVEVPKG-QAIFMK  266 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD~f~~~P~~-D~~~lk  266 (266)
                      +.++|||||||+|.++..++++||+++++++|+|++++.++.       .+||+++.+|+|+++|.+ |+|+++
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~  154 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLS  154 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEE
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcc
Confidence            999999999999999999999999999999999999987653       379999999999999987 999874

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.90  E-value=1.7e-24  Score=184.49  Aligned_cols=128  Identities=20%  Similarity=0.348  Sum_probs=118.7

Q ss_pred             hhhhhhHHHHHhcCCchhhhhccCCcchhccccChhHHHHHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHH
Q 046424          137 MDSWSCAKDALLEGSVPFMKAHNGMDGFAAAAKDERINNLFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANL  216 (266)
Q Consensus       137 ~~~~~~L~e~l~~g~~~f~~~~~g~~~~~~~~~~p~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~  216 (266)
                      ..+|.+|++++|+|+++|+.++ |.++|+|+.++|+..+.|+.+|+..+....+.+++.++ |++.++|||||||+|.++
T Consensus        18 ~~~~~~L~~~vr~G~~~~~~~~-G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~   95 (253)
T d1tw3a2          18 DISFTRLPDAIRTGRPTYESIY-GKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFA   95 (253)
T ss_dssp             GGGGGGHHHHHHHCCCCHHHHH-SSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHH
T ss_pred             cccHHHHHHHHHhCCchhhhcc-CCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHH
Confidence            3589999999999999999999 99999999999999999999999998888889999999 999999999999999999


Q ss_pred             HHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEeccCCCCCCCC-CEEEeC
Q 046424          217 KSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGDMFVEVPKG-QAIFMK  266 (266)
Q Consensus       217 ~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD~f~~~P~~-D~~~lk  266 (266)
                      ..+++++|+++++++|+|++++.++.       .+||+++.+|+|+++|.+ |+|+++
T Consensus        96 ~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~  153 (253)
T d1tw3a2          96 AAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILS  153 (253)
T ss_dssp             HHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEE
T ss_pred             HHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeec
Confidence            99999999999999999998887654       279999999999988877 999874

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.79  E-value=4.9e-20  Score=134.44  Aligned_cols=99  Identities=22%  Similarity=0.253  Sum_probs=85.7

Q ss_pred             CCCcChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccc
Q 046424           13 KPARDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTC   92 (266)
Q Consensus        13 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~   92 (266)
                      ||+|..++...+|++++||+.+++|++|++|||||+|+++| +|+|++|||+++++ +|.+++.|.|+||+|++.|+|++
T Consensus         2 ~~~e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~-~p~t~~eLa~~~~~-~~~~~~~L~RlLR~L~~~gi~~~   79 (101)
T d1fp2a1           2 KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG-KPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEI   79 (101)
T ss_dssp             CSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT-SCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEE
T ss_pred             ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcC-CCCCHHHHHHHcCC-CCccchHHHHHHHHHHhCCceee
Confidence            78999999999999999999999999999999999998754 39999999999998 22244679999999999999987


Q ss_pred             ccccCCCCccccceecchhcccccCCC
Q 046424           93 NLVSNKDGSVQRLYGLTPVSKYFVPNK  119 (266)
Q Consensus        93 ~~~~~~~~~~~~~y~~t~~s~~l~~~~  119 (266)
                      ..+   +   +++|.+|++|+.|+.++
T Consensus        80 ~~~---~---~~~Y~lt~~s~~Lv~~~  100 (101)
T d1fp2a1          80 ITK---E---EESYALTVASELLVRGS  100 (101)
T ss_dssp             EES---S---SEEEEECHHHHTTSTTS
T ss_pred             ecC---C---CCeEecCHHHHHhhcCC
Confidence            521   1   57899999999888754

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.66  E-value=8.4e-17  Score=117.50  Aligned_cols=104  Identities=63%  Similarity=0.940  Sum_probs=85.4

Q ss_pred             cChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCC-CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccc
Q 046424           16 RDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP-TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNL   94 (266)
Q Consensus        16 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~-~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~   94 (266)
                      +++++....++++++++.+++|++|++|||||+|+..|+ .++|..|||.+++.++|..+..|.|+||+|++.|+|.+..
T Consensus         3 ~dee~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~   82 (107)
T d1kyza1           3 SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSV   82 (107)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEee
Confidence            456777788899999999999999999999999998764 3789999999999855534568999999999999998653


Q ss_pred             ccCCCCccccceecchhcccccCCC
Q 046424           95 VSNKDGSVQRLYGLTPVSKYFVPNK  119 (266)
Q Consensus        95 ~~~~~~~~~~~y~~t~~s~~l~~~~  119 (266)
                      ....+|....+|.+||.|+.|++++
T Consensus        83 ~~~~dg~~~~~Y~LTpvsk~Lv~de  107 (107)
T d1kyza1          83 RTQQDGKVQRLYGLATVAKYLVKNE  107 (107)
T ss_dssp             EECTTSCEEEEEEECHHHHHHSCCT
T ss_pred             ecCCCCCeeeEEecchhHHhhcCCC
Confidence            2223443345799999999998763

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.64  E-value=2.7e-16  Score=110.96  Aligned_cols=80  Identities=19%  Similarity=0.270  Sum_probs=72.4

Q ss_pred             HHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCcccc
Q 046424           25 MELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQR  104 (266)
Q Consensus        25 ~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~  104 (266)
                      .....+++.+++|++|+++||||.|.. |  |+|++|||+++|+    ++..+.|+||+|++.|+|+++.        ++
T Consensus         6 l~~l~~~~~~~aL~~av~L~ifd~l~~-g--p~s~~eLA~~~g~----~~~~l~rlLr~l~a~gl~~e~~--------~~   70 (85)
T d1tw3a1           6 LIRLGSLHTPMVVRTAATLRLVDHILA-G--ARTVKALAARTDT----RPEALLRLIRHLVAIGLLEEDA--------PG   70 (85)
T ss_dssp             HHHHHCSHHHHHHHHHHHTTHHHHHHT-T--CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE--------TT
T ss_pred             HHHHHchHHHHHHHHHHHcCcHHHhcc-C--CCCHHHHHHHhCc----ChhHHHHHHHHHHHCCCeEecC--------CC
Confidence            445578999999999999999999976 4  9999999999999    9999999999999999999872        78


Q ss_pred             ceecchhcccccCCC
Q 046424          105 LYGLTPVSKYFVPNK  119 (266)
Q Consensus       105 ~y~~t~~s~~l~~~~  119 (266)
                      .|.+|+.|..|.+++
T Consensus        71 ~y~lt~~s~~L~~Dh   85 (85)
T d1tw3a1          71 EFVPTEVGELLADDH   85 (85)
T ss_dssp             EEEECTTGGGGSTTS
T ss_pred             eEecCHHHHHhhcCC
Confidence            999999999988763

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.60  E-value=1.5e-15  Score=111.08  Aligned_cols=104  Identities=47%  Similarity=0.738  Sum_probs=82.9

Q ss_pred             cChHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCC--CCCCHHHHHhhCCCC--CCCCcchHHHHHHHHhcCCccc
Q 046424           16 RDEQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASP--TQLSSSEIASQLPTN--NKKAPIILDRMLRLLASYSFLT   91 (266)
Q Consensus        16 ~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~--~~~t~~elA~~~~~~--~~~~~~~l~rlLr~L~~~g~l~   91 (266)
                      +++++....++++++++.+++|++|++|||+|+|+..|+  .++|+.|||.++..+  +|..+..|.|+||+|++.|+|.
T Consensus         2 ~~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~   81 (110)
T d1fp1d1           2 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLT   81 (110)
T ss_dssp             CHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEE
T ss_pred             chHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCccc
Confidence            346778889999999999999999999999999998752  258999999998862  2212446999999999999998


Q ss_pred             cccccCCCCccccceecchhcccccCCC
Q 046424           92 CNLVSNKDGSVQRLYGLTPVSKYFVPNK  119 (266)
Q Consensus        92 ~~~~~~~~~~~~~~y~~t~~s~~l~~~~  119 (266)
                      +.....++|.....|.+||.++.|++++
T Consensus        82 ~~~~~~~~g~~e~~Y~Ltpvsk~Lv~de  109 (110)
T d1fp1d1          82 STTRTIEDGGAERVYGLSMVGKYLVPDE  109 (110)
T ss_dssp             EEEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred             cccccCCCCCeeeEEecchhhHhhcCCC
Confidence            5532223343355799999999999875

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.60  E-value=6.7e-16  Score=110.34  Aligned_cols=87  Identities=21%  Similarity=0.265  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccC
Q 046424           18 EQDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSN   97 (266)
Q Consensus        18 ~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~   97 (266)
                      ..++..+++++.+++.+++|++|++||||+.|.. |  |+|++|||+++|+    +++.+.|+||+|++.|+|++..   
T Consensus         5 d~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~-g--p~t~~eLA~~~g~----~~~~l~rLlr~L~a~gll~~~~---   74 (92)
T d1qzza1           5 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA-G--ADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGGE---   74 (92)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT-T--CCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECCC---
T ss_pred             chhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC-C--CCCHHHHHHHHCc----CchHHHHHHHHHHHCCCeeeec---
Confidence            4778889999999999999999999999999986 4  9999999999999    9999999999999999999872   


Q ss_pred             CCCccccceecchhcccccC
Q 046424           98 KDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        98 ~~~~~~~~y~~t~~s~~l~~  117 (266)
                       ++  .+.|++|++|..|..
T Consensus        75 -d~--~~~~~~t~~g~lL~d   91 (92)
T d1qzza1          75 -KQ--GRPLRPTRLGMLLAD   91 (92)
T ss_dssp             -C---CCCCEECTTGGGGST
T ss_pred             -CC--CceecccHHHHhccC
Confidence             22  457999999988764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.68  E-value=1.6e-08  Score=85.59  Aligned_cols=74  Identities=14%  Similarity=0.188  Sum_probs=58.8

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCC-CCCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFV-EVPKG  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~P~~  260 (266)
                      ..+....+ ++...+|||||||+|.++..+++++ +.+++++|+ |..++.++.       .++|+++.+|+.+ ++|.+
T Consensus        57 ~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~  134 (282)
T d2o57a1          57 SELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDN  134 (282)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTT
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccccccccccc
Confidence            34444445 7778999999999999999999876 678999998 556766654       2689999999998 77765


Q ss_pred             --CEEEe
Q 046424          261 --QAIFM  265 (266)
Q Consensus       261 --D~~~l  265 (266)
                        |+|+.
T Consensus       135 sfD~V~~  141 (282)
T d2o57a1         135 SYDFIWS  141 (282)
T ss_dssp             CEEEEEE
T ss_pred             ccchhhc
Confidence              99874

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=1.2e-07  Score=78.31  Aligned_cols=74  Identities=14%  Similarity=0.179  Sum_probs=58.6

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCCCCCCC-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFVEVPKG-  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~~~P~~-  260 (266)
                      ..+.+.+. +....+|||||||+|..+..++++++ ++++++|+ |..++.+++       .+||+++.+|+.+..|.+ 
T Consensus        23 ~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~  100 (245)
T d1nkva_          23 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK  100 (245)
T ss_dssp             HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred             HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCc
Confidence            35566666 77779999999999999999998876 79999999 456665543       268999999999865554 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |+++.
T Consensus       101 fD~v~~  106 (245)
T d1nkva_         101 CDVAAC  106 (245)
T ss_dssp             EEEEEE
T ss_pred             eeEEEE
Confidence             88863

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.42  E-value=1.6e-07  Score=76.34  Aligned_cols=73  Identities=25%  Similarity=0.339  Sum_probs=57.6

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCC-CCCCC-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-EVPKG-  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~~P~~-  260 (266)
                      ..+++..+ .++..+|+|||||+|.++..+++..+  +++++|+. ..++.|+.      .++|+++.+|+.+ ++|.+ 
T Consensus         5 ~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~   81 (231)
T d1vl5a_           5 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER   81 (231)
T ss_dssp             HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred             HHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence            35566666 77889999999999999999999875  68899984 56666543      3789999999998 77765 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |+++.
T Consensus        82 fD~v~~   87 (231)
T d1vl5a_          82 FHIVTC   87 (231)
T ss_dssp             EEEEEE
T ss_pred             cccccc
Confidence             99875

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.36  E-value=6.1e-07  Score=72.88  Aligned_cols=67  Identities=16%  Similarity=0.192  Sum_probs=53.1

Q ss_pred             CCCCceEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCC-CCCCCCEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSK--YPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFV-EVPKGQAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~--~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~-~~P~~D~~~l  265 (266)
                      .....+|||||||+|..+..+++.  +|+++++++|+ |.+++.|++       ..++++..+|+.+ +.+..|++++
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~  114 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVIL  114 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEE
Confidence            345689999999999999999986  58999999999 678887764       2578888899887 4444476654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=1.5e-07  Score=79.22  Aligned_cols=65  Identities=22%  Similarity=0.294  Sum_probs=56.2

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCCCCCC-C-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFVEVPK-G-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~~~P~-~-D~~~  264 (266)
                      +...+|+|+|||+|..++.++..+|+++++..|. |..++.|+.+      .+|+++.+|+|++++. . |+++
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIv  180 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIV  180 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEE
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEE
Confidence            4567899999999999999999999999999999 5677776653      6899999999998876 3 9886

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.35  E-value=3.7e-07  Score=72.73  Aligned_cols=72  Identities=15%  Similarity=0.203  Sum_probs=56.5

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--------CCCceEEeccCCCCCCCC-
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS--------CPGVEHVGGDMFVEVPKG-  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~--------~~ri~~~~gD~f~~~P~~-  260 (266)
                      .+++.++ -.+..+|+|||||+|.++..+++..|+  ++++|+ |..++.++.        ..+++++.+|++++++.. 
T Consensus        43 lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~--v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~  119 (194)
T d1dusa_          43 ILVENVV-VDKDDDILDLGCGYGVIGIALADEVKS--TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK  119 (194)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSE--EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred             HHHHhCC-cCCCCeEEEEeecCChhHHHHHhhccc--cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence            3456665 456789999999999999999999884  677788 556666643        257999999999977764 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++++
T Consensus       120 fD~Ii~  125 (194)
T d1dusa_         120 YNKIIT  125 (194)
T ss_dssp             EEEEEE
T ss_pred             ceEEEE
Confidence             99886

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=2.1e-07  Score=78.11  Aligned_cols=65  Identities=17%  Similarity=0.291  Sum_probs=56.0

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-CCCceEEeccCCC-CCCCC--CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-CPGVEHVGGDMFV-EVPKG--QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-~~ri~~~~gD~f~-~~P~~--D~~~  264 (266)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ |..++.++. .++++++.+|..+ +++.+  |+++
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~  152 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAII  152 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEe
Confidence            3568999999999999999999999999999999 557776654 4799999999988 77765  8886

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.31  E-value=3.4e-07  Score=74.85  Aligned_cols=72  Identities=15%  Similarity=0.217  Sum_probs=58.7

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCC-CCCCC--
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV-EVPKG--  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~-~~P~~--  260 (266)
                      -+++..+ ++...+|||||||+|.++..++++.+  +++++|+. ..++.|+.      .++++++.+|..+ ++|.+  
T Consensus         7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f   83 (234)
T d1xxla_           7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF   83 (234)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred             HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence            3567777 88889999999999999999999875  68999985 46666543      2689999999988 77765  


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |+|+.
T Consensus        84 D~v~~   88 (234)
T d1xxla_          84 DIITC   88 (234)
T ss_dssp             EEEEE
T ss_pred             ceeee
Confidence            98874

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.22  E-value=7.6e-07  Score=75.05  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=58.5

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhhCCCC-----CCceEEeccCCC-CCCCC-C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDL-PHVLKHAPSC-----PGVEHVGGDMFV-EVPKG-Q  261 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~vi~~a~~~-----~ri~~~~gD~f~-~~P~~-D  261 (266)
                      .+++.+...+++.+|||||||+|.++..+++.+|. .+++++|+ |..++.++.+     .+++++.+|+.+ +++.. |
T Consensus        17 ~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD   96 (281)
T d2gh1a1          17 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD   96 (281)
T ss_dssp             HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred             HHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCce
Confidence            34444422567899999999999999999999985 78999998 4577766532     368999999988 66666 9


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus        97 ~v~~  100 (281)
T d2gh1a1          97 IAIC  100 (281)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.19  E-value=1.2e-06  Score=71.74  Aligned_cols=72  Identities=21%  Similarity=0.286  Sum_probs=56.2

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEEeccCCC-CCCCC-CE
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----PGVEHVGGDMFV-EVPKG-QA  262 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~~gD~f~-~~P~~-D~  262 (266)
                      .+++.+. ..+..+|||||||+|.++..++++..  +++++|+. ..++.|+..     .+|+++.+|+.+ +++.. |+
T Consensus        32 ~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~  108 (251)
T d1wzna1          32 EIFKEDA-KREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA  108 (251)
T ss_dssp             HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred             HHHHHhc-CCCCCEEEEeCCCCCccchhhcccce--EEEEEeeccccccccccccccccccchheehhhhhcccccccch
Confidence            3444444 45678999999999999999999754  78999996 488777642     589999999988 77765 88


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      ++.
T Consensus       109 I~~  111 (251)
T d1wzna1         109 VTM  111 (251)
T ss_dssp             EEE
T ss_pred             Hhh
Confidence            763

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=6e-07  Score=72.83  Aligned_cols=65  Identities=14%  Similarity=0.121  Sum_probs=52.4

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC------CCceEEeccCCC-CCCCC--CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC------PGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~------~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      .+..+|||||||+|.++..+++.++. +++++|+ |..++.|++.      ++++++.+|+.+ +++.+  |+|+.
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~  133 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWI  133 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            45689999999999999999888874 7899999 5677776542      568999999988 55543  98875

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.10  E-value=1.2e-06  Score=70.45  Aligned_cols=64  Identities=17%  Similarity=0.288  Sum_probs=50.1

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC---CCCCC--CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV---EVPKG--QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~---~~P~~--D~~~l  265 (266)
                      ...+||||||+|.++..+++.+|+..++++|+ +..+..+..      .++|+++.+|...   -+|.+  |.+++
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i  105 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL  105 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccc
Confidence            46899999999999999999999999999997 455554432      2689999999765   26654  66553

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.08  E-value=2.9e-06  Score=68.18  Aligned_cols=65  Identities=22%  Similarity=0.306  Sum_probs=50.4

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCC---CCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFV---EVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~---~~P~~--D~~~l  265 (266)
                      ....+||||||.|.++..+++.+|+..++++|+ +..+..+..      .+.|+++.+|..+   -+|..  |.+++
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i  107 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL  107 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcc
Confidence            346899999999999999999999999999998 445554432      2789999999765   36654  66543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.07  E-value=1.4e-06  Score=72.27  Aligned_cols=73  Identities=18%  Similarity=0.261  Sum_probs=56.5

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC----CCCceEEeccCCC-CCCCC--CE
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS----CPGVEHVGGDMFV-EVPKG--QA  262 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~----~~ri~~~~gD~f~-~~P~~--D~  262 (266)
                      .+++.++ ..+..++||||||+|.++..+++.+++ +++++|.. ..++.|++    .++++++.+|+.+ +++.+  |+
T Consensus        84 ~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~  161 (254)
T d1xtpa_          84 NFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL  161 (254)
T ss_dssp             HHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred             HHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccce
Confidence            4455555 557789999999999999999988776 78888984 57776653    3568999999987 55543  99


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      |++
T Consensus       162 I~~  164 (254)
T d1xtpa_         162 IVI  164 (254)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            875

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.06  E-value=1.8e-06  Score=70.08  Aligned_cols=65  Identities=12%  Similarity=0.205  Sum_probs=51.9

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--CCCceEEeccCCC-CCCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS--CPGVEHVGGDMFV-EVPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~--~~ri~~~~gD~f~-~~P~~-D~~~l  265 (266)
                      +.+..+|||||||+|.++..++++..  +++++|+ |..++.++.  .++++++.+|+-+ +.+.. |++++
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~   87 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVL   87 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEE
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhcccccccccccccccccccccccccccc
Confidence            44567899999999999999998865  5899999 557777764  3679999999877 45555 98875

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.06  E-value=1.1e-06  Score=69.34  Aligned_cols=71  Identities=17%  Similarity=0.140  Sum_probs=54.5

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCC-CCC--CC
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFV-EVP--KG  260 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~-~~P--~~  260 (266)
                      ++..+. .....+|+|||||+|.+++.+++..+  +++.+|+ |..++.++++       ++|+++.+|..+ ..+  ..
T Consensus        25 il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~  101 (186)
T d1l3ia_          25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI  101 (186)
T ss_dssp             HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred             HHHhcC-CCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCc
Confidence            445555 66779999999999999999988765  7899999 5677776642       699999999877 233  23


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |++++
T Consensus       102 D~v~~  106 (186)
T d1l3ia_         102 DIAVV  106 (186)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            87764

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.05  E-value=4.5e-06  Score=66.87  Aligned_cols=71  Identities=17%  Similarity=0.280  Sum_probs=54.1

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-----CCCceEEeccCCC-CCCCC--C
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-----CPGVEHVGGDMFV-EVPKG--Q  261 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-----~~ri~~~~gD~f~-~~P~~--D  261 (266)
                      .++..+  .....+|||||||+|.++..+++.  ..+++++|+. ..++.+++     ...+.++.+|+.+ ++|.+  |
T Consensus        29 ~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD  104 (226)
T d1ve3a1          29 PLLMKY--MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFD  104 (226)
T ss_dssp             HHHHHS--CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEE
T ss_pred             HHHHHh--cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCce
Confidence            344443  345579999999999999999986  5679999994 57776653     2578999999998 77764  9


Q ss_pred             EEEe
Q 046424          262 AIFM  265 (266)
Q Consensus       262 ~~~l  265 (266)
                      +++.
T Consensus       105 ~I~~  108 (226)
T d1ve3a1         105 YVIF  108 (226)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.98  E-value=6.6e-06  Score=65.18  Aligned_cols=71  Identities=13%  Similarity=0.049  Sum_probs=53.6

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCCC-CCCC-CE
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFVE-VPKG-QA  262 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~~-~P~~-D~  262 (266)
                      ++.... +-...+|||||||+|..+..++++.+  +++++|+. ..++.++.      .+++++..+|+.+. .+.. |+
T Consensus        22 ~~~~~~-~~~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~   98 (198)
T d2i6ga1          22 VLAAAK-VVAPGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDF   98 (198)
T ss_dssp             HHHHHT-TSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEE
T ss_pred             HHHHcc-cCCCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccE
Confidence            444444 54567999999999999999999864  68999995 46765542      26799999999984 4445 88


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      ++.
T Consensus        99 I~~  101 (198)
T d2i6ga1          99 ILS  101 (198)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            864

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.97  E-value=1.7e-06  Score=71.05  Aligned_cols=62  Identities=18%  Similarity=0.234  Sum_probs=50.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-----CCCceEEeccCCC-CCCCC-CEEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-----CPGVEHVGGDMFV-EVPKG-QAIF  264 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-----~~ri~~~~gD~f~-~~P~~-D~~~  264 (266)
                      ...+|||||||+|.++..++++..  +++++|+. ..++.|+.     ..+|+++.+|+.+ +++.. |+++
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~  106 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLIT  106 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEE
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccc
Confidence            457999999999999999999976  68999995 46776654     2579999999987 55655 9776

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=97.88  E-value=1.3e-05  Score=65.83  Aligned_cols=72  Identities=14%  Similarity=0.116  Sum_probs=52.9

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC-------CCCceEEeccCCC-CC-CC-
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS-------CPGVEHVGGDMFV-EV-PK-  259 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~-------~~ri~~~~gD~f~-~~-P~-  259 (266)
                      .+++.|  .+...+|||||||+|..+..+++..+. +++++|+.+ .++.|+.       ..++.+..+|++. ++ +. 
T Consensus        16 ~lI~~~--~~~~~~VLDlGCG~G~~~~~~~~~~~~-~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~   92 (252)
T d1ri5a_          16 CLIRLY--TKRGDSVLDLGCGKGGDLLKYERAGIG-EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGK   92 (252)
T ss_dssp             HHHHHH--CCTTCEEEEETCTTTTTHHHHHHHTCS-EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSS
T ss_pred             HHHHHh--CCCcCEEEEecccCcHHHHHHHHcCCC-eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccc
Confidence            345555  345689999999999999999887553 689999954 6666642       2579999999987 44 23 


Q ss_pred             C-CEEEe
Q 046424          260 G-QAIFM  265 (266)
Q Consensus       260 ~-D~~~l  265 (266)
                      . |+++.
T Consensus        93 ~fD~V~~   99 (252)
T d1ri5a_          93 EFDVISS   99 (252)
T ss_dssp             CEEEEEE
T ss_pred             cceEEEE
Confidence            3 98864

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.2e-05  Score=68.98  Aligned_cols=75  Identities=16%  Similarity=0.224  Sum_probs=58.2

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC---------------CCCceEEeccC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS---------------CPGVEHVGGDM  253 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~---------------~~ri~~~~gD~  253 (266)
                      ..+++.+. .+...+|+|||||.|..+..+++.+|..+++++|+.+ .++.|+.               ...|+++.|||
T Consensus       141 ~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~  219 (328)
T d1nw3a_         141 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  219 (328)
T ss_dssp             HHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred             HHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence            35666666 7778899999999999999999999998999999954 4444321               25799999999


Q ss_pred             CC-CCCC----CCEEEe
Q 046424          254 FV-EVPK----GQAIFM  265 (266)
Q Consensus       254 f~-~~P~----~D~~~l  265 (266)
                      .+ ++..    +|++++
T Consensus       220 ~~~~~~~~~~~advi~~  236 (328)
T d1nw3a_         220 LSEEWRERIANTSVIFV  236 (328)
T ss_dssp             TSHHHHHHHHHCSEEEE
T ss_pred             cccccccccCcceEEEE
Confidence            98 4332    477765

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.86  E-value=6.1e-06  Score=65.79  Aligned_cols=64  Identities=17%  Similarity=0.193  Sum_probs=51.1

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-CCceEEeccCCCCCCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-PGVEHVGGDMFVEVPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-~ri~~~~gD~f~~~P~~-D~~~l  265 (266)
                      ++ .++|+|+|||+|.+++.++...+. +++.+|. |..++.++.+ .+++++.+|+.+ +|.. |++++
T Consensus        47 l~-Gk~VLDlGcGtG~l~i~a~~~ga~-~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~-l~~~fD~Vi~  113 (197)
T d1ne2a_          47 IG-GRSVIDAGTGNGILACGSYLLGAE-SVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIM  113 (197)
T ss_dssp             SB-TSEEEEETCTTCHHHHHHHHTTBS-EEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEE
T ss_pred             CC-CCEEEEeCCCCcHHHHHHHHcCCC-cccccccCHHHHHHHHHccccccEEEEehhh-cCCcceEEEe
Confidence            54 489999999999999888887665 7899998 5577777654 789999999865 5555 98876

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.86  E-value=7.2e-06  Score=66.48  Aligned_cols=63  Identities=17%  Similarity=0.198  Sum_probs=49.6

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCC-CCCCC--CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFV-EVPKG--QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~-~~P~~--D~~~  264 (266)
                      ....+|||||||+|.++..++++  ..+++++|+ +..++.+++.....++.+|+-+ ++|.+  |+++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii  107 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVL  107 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEE
T ss_pred             CCCCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccccccccccccccccccccccccee
Confidence            45679999999999999999886  568999999 4588877764334567788877 77764  9876

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=1.4e-05  Score=66.47  Aligned_cols=89  Identities=18%  Similarity=0.200  Sum_probs=68.3

Q ss_pred             HHHHHHHhcchhh----HHHHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeech-HHHhhCCC-------
Q 046424          176 LFNQSMHNHTTIV----MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDLP-HVLKHAPS-------  242 (266)
Q Consensus       176 ~f~~~m~~~~~~~----~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dlp-~vi~~a~~-------  242 (266)
                      .|...|...++..    +..++...+ .+...+|||+|||+|.++..|++. .|+-+.+.+|.- +.++.|++       
T Consensus        68 ~~~~~~~r~tqiiypkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~  146 (264)
T d1i9ga_          68 DYVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG  146 (264)
T ss_dssp             HHHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT
T ss_pred             HHHhhccCCccccchHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc
Confidence            3555666666632    234556666 777899999999999999999998 899999999994 46666543       


Q ss_pred             --CCCceEEeccCCC-CCCCC--CEEEe
Q 046424          243 --CPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       243 --~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                        .++++++.+|+.+ ++|.+  |++++
T Consensus       147 ~~~~nv~~~~~d~~~~~~~~~~fDaV~l  174 (264)
T d1i9ga_         147 QPPDNWRLVVSDLADSELPDGSVDRAVL  174 (264)
T ss_dssp             SCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred             CCCceEEEEecccccccccCCCcceEEE
Confidence              2689999999987 67765  98875

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.79  E-value=1.6e-05  Score=65.66  Aligned_cols=88  Identities=16%  Similarity=0.118  Sum_probs=58.8

Q ss_pred             HHHHHHhcchhhH----HHHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeechH-HHhhCCC-------C
Q 046424          177 FNQSMHNHTTIVM----KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDLPH-VLKHAPS-------C  243 (266)
Q Consensus       177 f~~~m~~~~~~~~----~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dlp~-vi~~a~~-------~  243 (266)
                      |...|...++...    ..++...+ .....+|||+|||+|.++..+++. .|+-+.+.+|..+ .++.|++       .
T Consensus        58 ~~~~~~r~~qiiypkD~~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~  136 (250)
T d1yb2a1          58 FGRVIRRNTQIISEIDASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI  136 (250)
T ss_dssp             HHHHC------------------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC
T ss_pred             HHhhCCCCCcccCHHHHHHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC
Confidence            5555665555322    23444444 666799999999999999999987 7899999999954 5555543       2


Q ss_pred             CCceEEeccCCCCCCCC--CEEEe
Q 046424          244 PGVEHVGGDMFVEVPKG--QAIFM  265 (266)
Q Consensus       244 ~ri~~~~gD~f~~~P~~--D~~~l  265 (266)
                      .+|++..+|+.+.+|..  |++++
T Consensus       137 ~nv~~~~~Di~~~~~~~~fD~V~l  160 (250)
T d1yb2a1         137 GNVRTSRSDIADFISDQMYDAVIA  160 (250)
T ss_dssp             TTEEEECSCTTTCCCSCCEEEEEE
T ss_pred             CceEEEEeeeecccccceeeeeee
Confidence            68999999999877764  98875

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=1.5e-05  Score=63.21  Aligned_cols=57  Identities=16%  Similarity=0.111  Sum_probs=45.2

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCCCCceEEeccCCC-CCCCC--CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSCPGVEHVGGDMFV-EVPKG--QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~~ri~~~~gD~f~-~~P~~--D~~~l  265 (266)
                      ..+|||||||+|.++..+.      +.+++|+ |..++.++. .+++++.+|+.+ ++|.+  |+++.
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~   97 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALM   97 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEE
T ss_pred             CCeEEEECCCCcccccccc------eEEEEeCChhhcccccc-ccccccccccccccccccccccccc
Confidence            4589999999999988874      3578899 567777665 379999999987 67654  99875

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=2.4e-05  Score=66.41  Aligned_cols=63  Identities=16%  Similarity=0.168  Sum_probs=49.5

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEeccCCC-CCCC-C-CEEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGDMFV-EVPK-G-QAIF  264 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~P~-~-D~~~  264 (266)
                      +.++|||||||+|.++..++++.+. +++.+|..+....+..       .++|+++.+|+.+ +.|. . |+++
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga~-~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Iv  107 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGAK-KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVII  107 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCS-EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCCC-EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEE
Confidence            5689999999999999999988663 7999999764433221       3789999999998 6764 3 8886

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.76  E-value=1.2e-05  Score=53.90  Aligned_cols=56  Identities=18%  Similarity=0.209  Sum_probs=48.8

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchh
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPV  111 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~  111 (266)
                      +.|++.+...+ .|+|+.|||+.+|+    +..-+.|+|..|...|+++++.        +++|.+++.
T Consensus         8 l~IL~~~a~~~-~~~s~~eia~~~~~----~~st~~rll~tL~~~g~l~~~~--------~g~y~lG~~   63 (75)
T d1mkma1           8 FEILDFIVKNP-GDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRKK--------DKRYVPGYK   63 (75)
T ss_dssp             HHHHHHHHHCS-SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECT--------TSCEEECTH
T ss_pred             HHHHHHHHhCC-CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC--------CCCEeecHH
Confidence            56788888764 38999999999999    9999999999999999999872        678999874

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.75  E-value=1.8e-05  Score=62.81  Aligned_cols=65  Identities=25%  Similarity=0.317  Sum_probs=54.0

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----CCCceEEeccCCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-----CPGVEHVGGDMFV  255 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----~~ri~~~~gD~f~  255 (266)
                      ..+++.+. -.....++|++||+|.++..+++++|+.+++++|. |+.++.++.     .+|++++.++|-+
T Consensus        13 ~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~   83 (192)
T d1m6ya2          13 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE   83 (192)
T ss_dssp             HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred             HHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhh
Confidence            45666655 45668999999999999999999999999999999 467877654     2699999999865

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.73  E-value=5.2e-06  Score=68.89  Aligned_cols=84  Identities=17%  Similarity=0.242  Sum_probs=56.9

Q ss_pred             HHHHHHHhcchhhHHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-----CCceEE
Q 046424          176 LFNQSMHNHTTIVMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-----PGVEHV  249 (266)
Q Consensus       176 ~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-----~ri~~~  249 (266)
                      .|-..-+..+....+.+.+ +.  ....+|+|||||+|.+++.+++..  .+++.+|+. ..++.++.+     -.++++
T Consensus        98 aFGTG~H~TT~l~l~~l~~-~~--~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~~n~~~~~~~  172 (254)
T d2nxca1          98 AFGTGHHETTRLALKALAR-HL--RPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFL  172 (254)
T ss_dssp             ----CCSHHHHHHHHHHHH-HC--CTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHHHTTCCCEEE
T ss_pred             ccCccccchhhHHHHHHHh-hc--CccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHHHcCCceeEE
Confidence            5666666666665544433 32  356899999999999999888764  589999994 567766642     357888


Q ss_pred             eccCCCCCCCC--CEEE
Q 046424          250 GGDMFVEVPKG--QAIF  264 (266)
Q Consensus       250 ~gD~f~~~P~~--D~~~  264 (266)
                      .+|+....|.+  |+++
T Consensus       173 ~~d~~~~~~~~~fD~V~  189 (254)
T d2nxca1         173 EGSLEAALPFGPFDLLV  189 (254)
T ss_dssp             ESCHHHHGGGCCEEEEE
T ss_pred             eccccccccccccchhh
Confidence            89987766543  8776

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.72  E-value=2.2e-05  Score=63.11  Aligned_cols=74  Identities=19%  Similarity=0.284  Sum_probs=58.2

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhhCCC------CCCceEEeccCCCCCCC-C-
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFVEVPK-G-  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~P~-~-  260 (266)
                      .+++.++ .+...+|+|||||+|..+..+++.. |+.+++.+|. |+.++.++.      ..++.++.+|..+..|. + 
T Consensus        66 ~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~  144 (213)
T d1dl5a1          66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (213)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccc
Confidence            3566666 7788999999999999999999875 7888999997 556776654      27899999999885443 3 


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |++++
T Consensus       145 fD~I~~  150 (213)
T d1dl5a1         145 YDVIFV  150 (213)
T ss_dssp             EEEEEE
T ss_pred             hhhhhh
Confidence             88875

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=1.9e-05  Score=67.68  Aligned_cols=63  Identities=16%  Similarity=0.183  Sum_probs=49.8

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEeccCCC-CCCCC--CEEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGDMFV-EVPKG--QAIF  264 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~P~~--D~~~  264 (266)
                      +.++|||||||+|.++..++++... +++++|..+.+..++.       .++|+++.+|+.+ ++|..  |+++
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~-~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~  110 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAK-HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIII  110 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCS-EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEE
Confidence            3489999999999999887776543 7899999876655443       2789999999998 77753  8875

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.68  E-value=3.3e-05  Score=60.05  Aligned_cols=68  Identities=13%  Similarity=0.190  Sum_probs=51.1

Q ss_pred             HHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------------------CCCceEEeccCC
Q 046424          194 EIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------------------CPGVEHVGGDMF  254 (266)
Q Consensus       194 ~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------------------~~ri~~~~gD~f  254 (266)
                      ..+. .....+|||||||+|..+..|+++  ..+++++|+. ..++.+++                  ...+++..+|++
T Consensus        14 ~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          14 SSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence            3344 567789999999999999999998  6789999996 46666543                  145789999999


Q ss_pred             CCCC--C-C-CEEE
Q 046424          255 VEVP--K-G-QAIF  264 (266)
Q Consensus       255 ~~~P--~-~-D~~~  264 (266)
                      +..|  . . |+++
T Consensus        91 ~l~~~~~~~~D~i~  104 (201)
T d1pjza_          91 ALTARDIGHCAAFY  104 (201)
T ss_dssp             SSTHHHHHSEEEEE
T ss_pred             ccccccccceeEEE
Confidence            8432  2 2 7665

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.67  E-value=2.5e-05  Score=65.66  Aligned_cols=72  Identities=18%  Similarity=0.177  Sum_probs=53.2

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC-------CCCceEEeccCCCCCCCC-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS-------CPGVEHVGGDMFVEVPKG-  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~-------~~ri~~~~gD~f~~~P~~-  260 (266)
                      ..+++... .+...+|||||||.|..+..++++++ ++++++++.+ .++.+++       .+++++..+|+-+ +|.. 
T Consensus        52 ~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~f  128 (285)
T d1kpga_          52 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPV  128 (285)
T ss_dssp             HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCC
T ss_pred             HHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-ccccc
Confidence            34556665 77789999999999999999999995 8999999953 3333322       3799999999754 3443 


Q ss_pred             CEEE
Q 046424          261 QAIF  264 (266)
Q Consensus       261 D~~~  264 (266)
                      |.++
T Consensus       129 D~i~  132 (285)
T d1kpga_         129 DRIV  132 (285)
T ss_dssp             SEEE
T ss_pred             ccee
Confidence            6543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=7e-06  Score=66.78  Aligned_cols=64  Identities=13%  Similarity=0.117  Sum_probs=46.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-----CCCceEEeccCCC---CCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-----CPGVEHVGGDMFV---EVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-----~~ri~~~~gD~f~---~~P~~--D~~~l  265 (266)
                      ...+|||||||+|..+..++++.|. +++++|+. .+++.+++     ..++.++.+|...   ++|.+  |.+++
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~f  127 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  127 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceee
Confidence            4579999999999999999987764 78999984 57777654     2457777666543   56654  76653

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=2.1e-05  Score=67.03  Aligned_cols=63  Identities=17%  Similarity=0.141  Sum_probs=48.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhhCCC-------CCCceEEeccCCC-CCCCC--CEEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPHVLKHAPS-------CPGVEHVGGDMFV-EVPKG--QAIF  264 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~a~~-------~~ri~~~~gD~f~-~~P~~--D~~~  264 (266)
                      +.++|||||||+|.++..++++.+. +++.+|..+....+..       .++|+++.+|+.+ +.|..  |+++
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~-~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~iv  105 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGAR-KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIII  105 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCS-EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCC-EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEe
Confidence            3488999999999999988887654 7899998764443322       2789999999999 67753  8875

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.61  E-value=3.6e-05  Score=61.73  Aligned_cols=57  Identities=5%  Similarity=-0.007  Sum_probs=49.4

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCC
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFV  255 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~  255 (266)
                      ++...+|||||||+|..+..+++..|+.+++.+|+ |..++.++.    .+++.++-+|...
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~  115 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASK  115 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccC
Confidence            66779999999999999999999999999999999 667776643    3789999888877

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=6.4e-05  Score=62.49  Aligned_cols=88  Identities=18%  Similarity=0.151  Sum_probs=64.8

Q ss_pred             HHHHHHhcchhh----HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeech-HHHhhCCCC-------
Q 046424          177 FNQSMHNHTTIV----MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLP-HVLKHAPSC-------  243 (266)
Q Consensus       177 f~~~m~~~~~~~----~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~a~~~-------  243 (266)
                      |...|...++..    +..++...+ .+...+|+|+|||+|.++..+++.. |+.+++.+|.- +.++.|+++       
T Consensus        76 ~~~~~~r~~qiiypkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~  154 (266)
T d1o54a_          76 EIMNMKRRTQIVYPKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI  154 (266)
T ss_dssp             HHHTCCC-CCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG
T ss_pred             HHhhccCCccccchHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc
Confidence            445666555532    234566666 7788999999999999999999874 89999999994 566666542       


Q ss_pred             CCceEEeccCCCCCCCC--CEEEe
Q 046424          244 PGVEHVGGDMFVEVPKG--QAIFM  265 (266)
Q Consensus       244 ~ri~~~~gD~f~~~P~~--D~~~l  265 (266)
                      +++++..+|+...++..  |.+++
T Consensus       155 ~~v~~~~~d~~~~~~~~~~D~V~~  178 (266)
T d1o54a_         155 ERVTIKVRDISEGFDEKDVDALFL  178 (266)
T ss_dssp             GGEEEECCCGGGCCSCCSEEEEEE
T ss_pred             cCcEEEeccccccccccceeeeEe
Confidence            67888889987766653  77664

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.50  E-value=2.2e-05  Score=59.68  Aligned_cols=64  Identities=11%  Similarity=0.080  Sum_probs=50.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-------CCCceEEeccCCC--CCCCC--CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-------CPGVEHVGGDMFV--EVPKG--QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-------~~ri~~~~gD~f~--~~P~~--D~~~l  265 (266)
                      ...+|||+|||+|.++++++.+... +++.+|. |..++.++.       .++++++.+|.++  +.+..  |++++
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~   89 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFL   89 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEe
Confidence            4589999999999999999998775 8999999 456665443       2789999999877  33333  98886

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00012  Score=59.08  Aligned_cols=64  Identities=8%  Similarity=0.056  Sum_probs=48.8

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC-----------------------CCCceEEeccCC
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS-----------------------CPGVEHVGGDMF  254 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~-----------------------~~ri~~~~gD~f  254 (266)
                      .....+|||+|||.|..+..|+++  ..++|++|+.+ .|+.++.                       ..+|+++.+|+|
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            456689999999999999999987  66899999954 6654321                       158999999999


Q ss_pred             C--CCCCC--CEEE
Q 046424          255 V--EVPKG--QAIF  264 (266)
Q Consensus       255 ~--~~P~~--D~~~  264 (266)
                      +  +.+.+  |+++
T Consensus       121 ~l~~~~~~~fd~i~  134 (229)
T d2bzga1         121 DLPRTNIGKFDMIW  134 (229)
T ss_dssp             GGGGSCCCCEEEEE
T ss_pred             hccccccCceeEEE
Confidence            8  33333  7765

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.44  E-value=9.2e-05  Score=62.31  Aligned_cols=72  Identities=19%  Similarity=0.207  Sum_probs=52.7

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC-------CCCceEEeccCCCCCCCC-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS-------CPGVEHVGGDMFVEVPKG-  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~-------~~ri~~~~gD~f~~~P~~-  260 (266)
                      ..+++... .+...+|||||||.|.++..++++++ ++++++++.+ .++.++.       ..++++...|+-. .+.. 
T Consensus        51 ~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~-~~~~f  127 (291)
T d1kpia_          51 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-FDEPV  127 (291)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-CCCCC
T ss_pred             HHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc-ccccc
Confidence            35567666 77889999999999999999999997 6999999964 3333322       3688888888642 2222 


Q ss_pred             CEEE
Q 046424          261 QAIF  264 (266)
Q Consensus       261 D~~~  264 (266)
                      |.|+
T Consensus       128 D~i~  131 (291)
T d1kpia_         128 DRIV  131 (291)
T ss_dssp             SEEE
T ss_pred             ceEe
Confidence            7654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.44  E-value=8.9e-05  Score=62.04  Aligned_cols=72  Identities=13%  Similarity=0.148  Sum_probs=52.4

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC-------CCCceEEeccCCCCCCCC-
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS-------CPGVEHVGGDMFVEVPKG-  260 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~-------~~ri~~~~gD~f~~~P~~-  260 (266)
                      ..+++.+. .+...+|||||||.|.++..++++++ ++++++|+.+ .++.+++       ..++.+...|+.+ +|.. 
T Consensus        42 ~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-~~~~f  118 (280)
T d2fk8a1          42 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPV  118 (280)
T ss_dssp             HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCC
T ss_pred             HHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-hccch
Confidence            45667666 77889999999999999999888885 6999999963 4444332       2577777777543 4444 


Q ss_pred             CEEE
Q 046424          261 QAIF  264 (266)
Q Consensus       261 D~~~  264 (266)
                      |.++
T Consensus       119 D~i~  122 (280)
T d2fk8a1         119 DRIV  122 (280)
T ss_dssp             SEEE
T ss_pred             hhhh
Confidence            7665

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.44  E-value=0.00018  Score=58.34  Aligned_cols=58  Identities=7%  Similarity=0.111  Sum_probs=48.4

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhC----CCCCCceEEeccCCCC
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHA----PSCPGVEHVGGDMFVE  256 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a----~~~~ri~~~~gD~f~~  256 (266)
                      .+...+|+|||||+|..+..+++..|+-+++.+|+ |..++.+    ...+.+.++-+|...+
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~  134 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKP  134 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCG
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccC
Confidence            56779999999999999999999999999999999 5566554    3457888888888773

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.40  E-value=9.1e-05  Score=58.88  Aligned_cols=64  Identities=14%  Similarity=0.111  Sum_probs=48.1

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-----CCCceEEeccCCCCCCCC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-----CPGVEHVGGDMFVEVPKG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-----~~ri~~~~gD~f~~~P~~-D~~~l  265 (266)
                      +++ .+|||+|||+|.++++++.+.+ .+++.+|.. ..++.++.     ..+++++.+|..+ ++.. |++++
T Consensus        45 l~g-~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~-~~~~fD~Vi~  115 (201)
T d1wy7a1          45 IEG-KVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIM  115 (201)
T ss_dssp             STT-CEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEE
T ss_pred             CCC-CEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhh-hCCcCcEEEE
Confidence            444 7999999999999999887654 589999995 46665543     2578888889865 3444 88875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00014  Score=58.81  Aligned_cols=75  Identities=19%  Similarity=0.146  Sum_probs=55.8

Q ss_pred             HHHHHcc-CCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhhCCC-----------CCCceEEeccCCCC
Q 046424          191 EILEIYK-GFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDL-PHVLKHAPS-----------CPGVEHVGGDMFVE  256 (266)
Q Consensus       191 ~i~~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~~  256 (266)
                      .+++.+. ..+...+|||||||+|..+.-+++. .|.-+++.+|. ++.++.+++           ..+++++.+|.+..
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~  144 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  144 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence            3455542 1556789999999999998888875 68889999998 456666543           16889999999885


Q ss_pred             CCC-C--CEEEe
Q 046424          257 VPK-G--QAIFM  265 (266)
Q Consensus       257 ~P~-~--D~~~l  265 (266)
                      .|. +  |+|++
T Consensus       145 ~~~~~~fD~I~~  156 (224)
T d1i1na_         145 YAEEAPYDAIHV  156 (224)
T ss_dssp             CGGGCCEEEEEE
T ss_pred             cchhhhhhhhhh
Confidence            443 3  88875

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.36  E-value=8.6e-05  Score=61.47  Aligned_cols=65  Identities=15%  Similarity=0.055  Sum_probs=51.3

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-------CCCceEEeccCCCCCCC--CCEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-------CPGVEHVGGDMFVEVPK--GQAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-------~~ri~~~~gD~f~~~P~--~D~~~l  265 (266)
                      +...+|||+|||+|.++..++++ +..+++.+|+. ..++.++.       .++|+++.+|.++-.+.  .|.++|
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~  180 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILM  180 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEE
T ss_pred             CCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEE
Confidence            46799999999999999999986 56789999994 46665543       26899999999984444  387776

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=9.2e-05  Score=61.64  Aligned_cols=63  Identities=17%  Similarity=0.249  Sum_probs=50.9

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCCCCCCC---C-CEEE
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFVEVPK---G-QAIF  264 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~~~P~---~-D~~~  264 (266)
                      +..+++|+|||+|..+..++ ++|+.+++..|.. ..++.|+.+       .++.+..+|++++.+.   . |+++
T Consensus       110 ~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIV  184 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMIL  184 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEE
T ss_pred             cccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEE
Confidence            45789999999999999987 5799999999994 466665542       6899999999997653   3 8876

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00015  Score=59.68  Aligned_cols=54  Identities=9%  Similarity=-0.015  Sum_probs=44.4

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMF  254 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f  254 (266)
                      ...+++|||+|+|..+..|++++|++++++.|+. ..++.|+.+       +|+.++..+..
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~  122 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQK  122 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccH
Confidence            4579999999999999999999999999999994 566666542       78888765443

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.22  E-value=0.0002  Score=57.91  Aligned_cols=72  Identities=10%  Similarity=0.183  Sum_probs=54.8

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----CCCceEEeccCCCCCCC-C--CE
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----CPGVEHVGGDMFVEVPK-G--QA  262 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----~~ri~~~~gD~f~~~P~-~--D~  262 (266)
                      .+++.++ .+...+|+|||||+|.++..+++..  -+++.+|. |..++.++.    ..+++++.+|.+..+|. +  |+
T Consensus        61 ~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~  137 (224)
T d1vbfa_          61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR  137 (224)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHHHHhh-hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence            3566666 7788999999999999988887775  36777776 455555543    47899999999886665 4  98


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      |++
T Consensus       138 Iiv  140 (224)
T d1vbfa_         138 VVV  140 (224)
T ss_dssp             EEE
T ss_pred             HHh
Confidence            875

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.0002  Score=62.81  Aligned_cols=51  Identities=6%  Similarity=0.135  Sum_probs=42.1

Q ss_pred             HHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCC
Q 046424          190 KEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAP  241 (266)
Q Consensus       190 ~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~  241 (266)
                      ..+++.++ .+...+|||||||.|..+..+++.+|..+++++|+.+ .++.|+
T Consensus       206 ~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak  257 (406)
T d1u2za_         206 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTI  257 (406)
T ss_dssp             HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHH
T ss_pred             HHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence            35666666 7777899999999999999999999988899999954 555554

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00044  Score=58.85  Aligned_cols=89  Identities=17%  Similarity=0.173  Sum_probs=62.5

Q ss_pred             HHHHHHHhcchh----hHHHHHHHccCCCCCceEEEecCCccHHHHHHHHH-CCCCeEEEeech-HHHhhCCC-------
Q 046424          176 LFNQSMHNHTTI----VMKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDLP-HVLKHAPS-------  242 (266)
Q Consensus       176 ~f~~~m~~~~~~----~~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dlp-~vi~~a~~-------  242 (266)
                      .|...|...++.    .+..|+..++ .....+|+|+|||+|.++..|++. .|+-+++.+|.- +.++.|++       
T Consensus        70 d~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~  148 (324)
T d2b25a1          70 DYVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRD  148 (324)
T ss_dssp             HHHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             HHhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhh
Confidence            355667666553    2234666676 777899999999999999999987 699999999984 44444332       


Q ss_pred             ----------CCCceEEeccCCC---CCCCC--CEEEe
Q 046424          243 ----------CPGVEHVGGDMFV---EVPKG--QAIFM  265 (266)
Q Consensus       243 ----------~~ri~~~~gD~f~---~~P~~--D~~~l  265 (266)
                                .+++++..+|+-.   .++..  |++++
T Consensus       149 ~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L  186 (324)
T d2b25a1         149 SWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL  186 (324)
T ss_dssp             HHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE
T ss_pred             hhhhhhhhccccceeEEecchhhcccccCCCCcceEee
Confidence                      1689999999865   24443  88775

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.12  E-value=8.7e-05  Score=63.08  Aligned_cols=66  Identities=17%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC-----------CCCceEEeccCCC---CCCCC-CEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS-----------CPGVEHVGGDMFV---EVPKG-QAI  263 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~gD~f~---~~P~~-D~~  263 (266)
                      .++++||.||||.|..+.++++..|..+.+++|+ |.|++.++.           .+|++++.+|.++   ..+.. |+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            4679999999999999999999888999999999 567776543           3799999999987   34445 888


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      ++
T Consensus       156 i~  157 (312)
T d1uira_         156 II  157 (312)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=96.94  E-value=0.00037  Score=56.60  Aligned_cols=69  Identities=12%  Similarity=0.276  Sum_probs=53.4

Q ss_pred             HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCC----CCCCceEEeccCCC-CCCCC
Q 046424          189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAP----SCPGVEHVGGDMFV-EVPKG  260 (266)
Q Consensus       189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~----~~~ri~~~~gD~f~-~~P~~  260 (266)
                      ...+++..+ .+...+|++||+|.|.+...|+++..  +.+++|+. ..++.++    ..++++++.+|+++ ++|..
T Consensus        10 ~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~   84 (235)
T d1qama_          10 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKN   84 (235)
T ss_dssp             HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSS
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccccc
Confidence            455667666 67789999999999999999999854  57777774 3444433    34899999999999 77764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.91  E-value=0.00029  Score=58.65  Aligned_cols=66  Identities=18%  Similarity=0.281  Sum_probs=53.8

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCC--C-CCCC-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFV--E-VPKG-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~--~-~P~~-D~~~  264 (266)
                      .++++|+-||||.|..+..+++..|..+.+++|+ |.|++.++.          .+|++++.+|-++  . .+.. |+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            4679999999999999999998888889999999 567777643          3799999999887  2 3344 8887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       154 ~  154 (274)
T d1iy9a_         154 V  154 (274)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.90  E-value=0.0008  Score=55.95  Aligned_cols=54  Identities=20%  Similarity=0.219  Sum_probs=40.2

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC----------CCceEEeccCCC
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC----------PGVEHVGGDMFV  255 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~----------~ri~~~~gD~f~  255 (266)
                      .+..+|||||||+|.++..|+++  +.+++++|+. ..++.|+..          .+..+...|+..
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  119 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             cCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence            45679999999999999999987  5789999995 466655431          234455666654

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.00021  Score=60.13  Aligned_cols=66  Identities=17%  Similarity=0.237  Sum_probs=54.1

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCC---CCCCC-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFV---EVPKG-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~---~~P~~-D~~~  264 (266)
                      .++++|+-||||.|..+.++++..|..+++++|+ |.|++.++.          .+|++++.+|-++   ..+.. |+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            3689999999999999999999888889999999 568887654          2799999999887   23444 8887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       168 ~  168 (295)
T d1inla_         168 I  168 (295)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.86  E-value=0.00065  Score=54.37  Aligned_cols=73  Identities=21%  Similarity=0.246  Sum_probs=54.9

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCCCCCC-C--
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFVEVPK-G--  260 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~P~-~--  260 (266)
                      .+++.++ .+...+|+|||+|+|..+.-+++.. +-+++.+|. |+.++.++.      .++++++.+|.++.+|. +  
T Consensus        69 ~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pf  146 (215)
T d1jg1a_          69 IMLEIAN-LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPY  146 (215)
T ss_dssp             HHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHhhc-cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcc
Confidence            4556666 7778999999999999998777654 345766666 567776654      27899999999996664 3  


Q ss_pred             CEEEe
Q 046424          261 QAIFM  265 (266)
Q Consensus       261 D~~~l  265 (266)
                      |+|++
T Consensus       147 D~Iiv  151 (215)
T d1jg1a_         147 DVIIV  151 (215)
T ss_dssp             EEEEE
T ss_pred             eeEEe
Confidence            88875

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00025  Score=59.38  Aligned_cols=66  Identities=15%  Similarity=0.243  Sum_probs=54.4

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCC---CCCCC-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFV---EVPKG-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~---~~P~~-D~~~  264 (266)
                      ..+++++-||||.|..+.++++..|..+++++|+ |.|++.++.          .+|++++.+|-++   .-+.. |+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            4679999999999999999998888889999999 568887753          3899999999776   34445 8887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       157 ~  157 (285)
T d2o07a1         157 T  157 (285)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.79  E-value=0.0013  Score=52.79  Aligned_cols=75  Identities=17%  Similarity=0.194  Sum_probs=54.2

Q ss_pred             HHHHHcc-CCCCCceEEEecCCccHHHHHHHHH------CCCCeEEEeec-hHHHhhCCC-----------CCCceEEec
Q 046424          191 EILEIYK-GFEGLNQLVDVAGGLGANLKSIVSK------YPQLRGINFDL-PHVLKHAPS-----------CPGVEHVGG  251 (266)
Q Consensus       191 ~i~~~~~-~~~~~~~vvDVGGG~G~~~~~l~~~------~P~l~~~v~Dl-p~vi~~a~~-----------~~ri~~~~g  251 (266)
                      .++..+. +.++..+|||||||+|.++.-+++.      ++..+++.+|. ++.++.+++           ..+|+++.+
T Consensus        69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~  148 (223)
T d1r18a_          69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  148 (223)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence            3455541 2667799999999999988777665      56778888887 455555543           158999999


Q ss_pred             cCCCCCCC-C--CEEEe
Q 046424          252 DMFVEVPK-G--QAIFM  265 (266)
Q Consensus       252 D~f~~~P~-~--D~~~l  265 (266)
                      |..+..|. +  |+|++
T Consensus       149 d~~~~~~~~~~fD~Iiv  165 (223)
T d1r18a_         149 DGRKGYPPNAPYNAIHV  165 (223)
T ss_dssp             CGGGCCGGGCSEEEEEE
T ss_pred             ccccccccccceeeEEE
Confidence            99985554 3  88875

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=96.78  E-value=0.00063  Score=55.55  Aligned_cols=69  Identities=10%  Similarity=0.252  Sum_probs=54.9

Q ss_pred             HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC----CCCceEEeccCCC-CCCCC
Q 046424          189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS----CPGVEHVGGDMFV-EVPKG  260 (266)
Q Consensus       189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~----~~ri~~~~gD~f~-~~P~~  260 (266)
                      ...+++..+ .+...+|++||+|.|.+...|+++..  +.+.+|+.+ .++.++.    .++++++.+|+.+ ++|..
T Consensus        18 i~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~   92 (245)
T d1yuba_          18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNK   92 (245)
T ss_dssp             HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCS
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccc
Confidence            456778776 77789999999999999999999854  688888854 4555543    2689999999999 78764

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.64  E-value=0.00052  Score=57.09  Aligned_cols=65  Identities=15%  Similarity=0.241  Sum_probs=50.6

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------------CCCceEEeccCCC--CCCCC
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------------CPGVEHVGGDMFV--EVPKG  260 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------------~~ri~~~~gD~f~--~~P~~  260 (266)
                      .++++|+-||||.|..+.++++ +|..+++++|+ |.|++.++.                .+|++++.+|-++  .....
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            4789999999999999999986 56678999999 568876642                3799999999775  22234


Q ss_pred             -CEEEe
Q 046424          261 -QAIFM  265 (266)
Q Consensus       261 -D~~~l  265 (266)
                       |+|++
T Consensus       150 yDvIi~  155 (276)
T d1mjfa_         150 FDVIIA  155 (276)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence             87764

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0006  Score=53.06  Aligned_cols=63  Identities=16%  Similarity=0.176  Sum_probs=48.6

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCC--CCC-CC-CEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFV--EVP-KG-QAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~--~~P-~~-D~~~l  265 (266)
                      ..+|||++||+|.++.+.+.+... +++.+|.. ..++.++.      ...++++.+|.++  ... .. |++++
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~  117 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFV  117 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             hhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEE
Confidence            378999999999999999999876 78999985 46655443      2678889999887  222 23 99886

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.55  E-value=0.00062  Score=57.00  Aligned_cols=66  Identities=17%  Similarity=0.230  Sum_probs=53.9

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCC---CCCC-C-CEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFV---EVPK-G-QAI  263 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~---~~P~-~-D~~  263 (266)
                      .++++|+=||||.|..+.++++..|-.+++++|+ |.|++.++.          .+|++.+.+|-++   ..+. . |+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            4789999999999999999999888778999999 557777654          3899999999776   3454 3 888


Q ss_pred             Ee
Q 046424          264 FM  265 (266)
Q Consensus       264 ~l  265 (266)
                      ++
T Consensus       159 i~  160 (290)
T d1xj5a_         159 IV  160 (290)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.52  E-value=0.00046  Score=58.35  Aligned_cols=66  Identities=17%  Similarity=0.259  Sum_probs=52.6

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC----------CCCceEEeccCCC---CCCCC-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS----------CPGVEHVGGDMFV---EVPKG-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~----------~~ri~~~~gD~f~---~~P~~-D~~~  264 (266)
                      .++++|+-||||.|..+.++++..|-.+++++|+ |.|++.++.          .+|++++.+|-++   .-+.. |+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            4679999999999999999998877788999999 567776643          2789999888877   23334 8776


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       185 ~  185 (312)
T d2b2ca1         185 T  185 (312)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.44  E-value=0.00075  Score=47.01  Aligned_cols=68  Identities=19%  Similarity=0.242  Sum_probs=53.3

Q ss_pred             HHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccc
Q 046424           39 SATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKY  114 (266)
Q Consensus        39 ~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~  114 (266)
                      .-.++.|+..|...|  +.|+.|||+.+++    ++..+.+.++.|...|+|+.... ..+++ .-.|++|+.+..
T Consensus        15 ~p~r~~IL~~L~~~~--~~~~~eLa~~l~i----s~~~vs~~l~~L~~~glV~~~~~-~~d~r-~~~~~LT~~G~~   82 (100)
T d1ub9a_          15 NPVRLGIMIFLLPRR--KAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKV-IADRP-RTVVEITDFGME   82 (100)
T ss_dssp             SHHHHHHHHHHHHHS--EEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEE-CSSSC-EEEEEECHHHHH
T ss_pred             CHHHHHHHHHhccCC--CeeHHHHHHHHhh----ccccccHHHHHHhhhceeEEEEc-CcCCc-cccccCCHHHHH
Confidence            445788899998776  8999999999999    99999999999999999986521 11111 234889987754

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=96.36  E-value=0.0023  Score=40.81  Aligned_cols=53  Identities=19%  Similarity=0.137  Sum_probs=44.8

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceec
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGL  108 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~  108 (266)
                      .|.+++.++|-.|-++.|||+.+|+    ++..++.+|+.|+..|.+.+..        ++.|.+
T Consensus        11 ~I~~~~~~~g~~PP~vrdl~~~l~~----~e~~~~~lL~~l~~~G~lvkI~--------~d~yfh   63 (64)
T d1lvaa3          11 DLEDKYRVSRWQPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKIN--------DEFYWH   63 (64)
T ss_dssp             HHHHHHHHHTTSCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEESS--------SSBEEE
T ss_pred             HHHHHHHHcCCCCCcHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec--------cccccc
Confidence            4566777766569999999999999    9999999999999999999872        667754

>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Cadmium efflux system accessory protein CadC
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.29  E-value=0.0013  Score=46.66  Aligned_cols=66  Identities=18%  Similarity=0.204  Sum_probs=52.5

Q ss_pred             HHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           34 PMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        34 ~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +.+|.--.++.|+..|...|  +.++.|||+.+|+    +...+..-|+.|...|+|...+    +|+ .-.|++++
T Consensus        25 ~kaLadp~Rl~Il~~L~~~~--~~~v~ela~~l~~----s~s~vS~HL~~L~~aGlv~~~r----~G~-~~~Y~l~~   90 (108)
T d1u2wa1          25 LKAIADENRAKITYALCQDE--ELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRK----EGK-LALYSLGD   90 (108)
T ss_dssp             HHHHHSHHHHHHHHHHHHSS--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---------CCEEEESC
T ss_pred             HHHhCCHHHHHHHHHHHhCC--CccHHHHHHHHcc----ChhHHHHHHHHHHHCCeeEEEE----ECC-EEEEEECH
Confidence            45666778899999997655  8999999999999    9999999999999999999873    232 33466654

>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Metal-sensing transcriptional repressor CzrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.24  E-value=0.0011  Score=45.82  Aligned_cols=53  Identities=17%  Similarity=0.288  Sum_probs=46.2

Q ss_pred             HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccc
Q 046424           35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNL   94 (266)
Q Consensus        35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~   94 (266)
                      .+|.--.++.|+..|..+   +.++.||++.+|+    +...+.+-|+.|...|+|...+
T Consensus        13 kaL~d~~Rl~Il~~L~~~---~~~v~el~~~l~~----s~~~vS~HL~~L~~~glv~~~r   65 (94)
T d1r1ua_          13 KALGDYNRIRIMELLSVS---EASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAKR   65 (94)
T ss_dssp             HHTCSHHHHHHHHHHHHC---CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHhCCHHHHHHHHHHHcC---CccHHHHHHHHCC----CHHHHHHHHHHHHHCCceEEEE
Confidence            445555778889999874   8999999999999    9999999999999999999874

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=96.11  E-value=0.0021  Score=41.75  Aligned_cols=46  Identities=11%  Similarity=0.224  Sum_probs=41.8

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ...|+..|...|  ++|..|||+.+|+    ++..+.++++-|...|++.+.
T Consensus         8 ~~~Il~~l~~~g--~~sr~eLa~~~gl----S~~Tv~~~l~~L~~~Glv~e~   53 (71)
T d1z05a1           8 AGRVYKLIDQKG--PISRIDLSKESEL----APASITKITRELIDAHLIHET   53 (71)
T ss_dssp             HHHHHHHHHHHC--SBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHcC--CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            345888998887  9999999999999    999999999999999999865

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0026  Score=52.25  Aligned_cols=41  Identities=15%  Similarity=0.268  Sum_probs=28.8

Q ss_pred             CCceEEEecCCccHHHHHHH----HHCCCCe--EEEeech-HHHhhCC
Q 046424          201 GLNQLVDVAGGLGANLKSIV----SKYPQLR--GINFDLP-HVLKHAP  241 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~----~~~P~l~--~~v~Dlp-~vi~~a~  241 (266)
                      ...+|||||||+|.++..|+    +.+|+..  .+++|.. ..++.++
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~   87 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYK   87 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHH
Confidence            34589999999999866654    4577654  5888974 3555543

>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: SmtB repressor
species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]

Probab=96.02  E-value=0.002  Score=44.83  Aligned_cols=53  Identities=19%  Similarity=0.350  Sum_probs=46.4

Q ss_pred             HHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccc
Q 046424           35 MTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNL   94 (266)
Q Consensus        35 ~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~   94 (266)
                      .+|.--.++.|+..|.. +  +.++.|||+.+|+    +...+...|+.|...|+|...+
T Consensus        18 kaL~~p~Rl~Il~~L~~-~--~~~v~ela~~l~i----s~stvS~HL~~L~~aglV~~~r   70 (98)
T d1r1ta_          18 AVLADPNRLRLLSLLAR-S--ELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRK   70 (98)
T ss_dssp             HHHCCHHHHHHHHHHTT-C--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHhCCHHHHHHHHHHHc-C--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEE
Confidence            45556678889999976 3  8999999999999    9999999999999999999873

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=95.87  E-value=0.00096  Score=51.26  Aligned_cols=65  Identities=14%  Similarity=0.167  Sum_probs=45.1

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC-------CCceEEeccCCCC---CC-CC-CEEEe
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC-------PGVEHVGGDMFVE---VP-KG-QAIFM  265 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~-------~ri~~~~gD~f~~---~P-~~-D~~~l  265 (266)
                      .....+|+|+|||+|.++++++++.  .+++.+|.. ..++.++++       .++....+|.|.+   .+ .. |++++
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~  116 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence            3456799999999999999988885  478889994 466655432       5666666665531   22 23 88775

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.0039  Score=39.53  Aligned_cols=47  Identities=13%  Similarity=0.258  Sum_probs=40.4

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .++.|+..|.+++  .+|.+|||+.+|+    +...+.+-+..|...|+..+.
T Consensus         6 ~~~~iL~~L~~~~--~~s~~eLa~~l~v----S~~ti~r~i~~L~~~G~~I~~   52 (63)
T d1biaa1           6 VPLKLIALLANGE--FHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFT   52 (63)
T ss_dssp             HHHHHHHHHTTSS--CBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEE
T ss_pred             HHHHHHHHHHHCC--cCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCcEEE
Confidence            3567889997764  8999999999999    999999999999999985443

>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF1790-like
domain: Transcriptional regulatory protein PF1790
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.81  E-value=0.0031  Score=49.30  Aligned_cols=70  Identities=16%  Similarity=0.222  Sum_probs=53.1

Q ss_pred             HHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424           37 IKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK  113 (266)
Q Consensus        37 L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~  113 (266)
                      |.--.++.|+..|.. |  |.|+.|||+.+|+    ++..+.+.|+.|...|+|+........|+....|.++..+.
T Consensus        12 l~~~~R~~Il~~L~~-~--~~~~~ela~~l~~----s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~   81 (194)
T d2p4wa1          12 LGNETRRRILFLLTK-R--PYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR   81 (194)
T ss_dssp             HHSHHHHHHHHHHHH-S--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred             hCCHHHHHHHHHHHh-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence            333356777888876 4  9999999999999    99999999999999999985421112344455688888654

>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein ywnA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.79  E-value=0.0047  Score=44.79  Aligned_cols=44  Identities=30%  Similarity=0.484  Sum_probs=38.2

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNL   94 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~   94 (266)
                      ++..|+.++  ++|.++||+.+++    ++..++++|+.|...|+|+..+
T Consensus         9 ~L~~la~~~--~~ss~~IA~~~~~----~~~~v~kIl~~L~~aglV~s~r   52 (127)
T d1xd7a_           9 ILSLISMDE--KTSSEIIADSVNT----NPVVVRRMISLLKKADILTSRA   52 (127)
T ss_dssp             HHHHHHTCS--CCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS
T ss_pred             HHHHHhcCC--CCCHHHHHHHhCc----CHHHHHHHHHHHHHhCcccccC
Confidence            355556555  8999999999999    9999999999999999999763

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Mlc protein N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0045  Score=40.09  Aligned_cols=45  Identities=7%  Similarity=0.151  Sum_probs=41.2

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ..|+..|...|  ++|-.|||+.+|+    +...+.++++-|...|+|.+.
T Consensus         8 ~~Il~~i~~~g--~~sr~eLa~~~gL----S~~Tvs~iv~~L~~~glv~e~   52 (70)
T d1z6ra1           8 GAVYRLIDQLG--PVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL   52 (70)
T ss_dssp             HHHHHHHHSSC--SCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred             HHHHHHHHHcC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence            34788898887  9999999999999    999999999999999999875

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.69  E-value=0.007  Score=38.50  Aligned_cols=60  Identities=15%  Similarity=0.334  Sum_probs=46.5

Q ss_pred             HHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCc-cccccccCCCCccccceecch
Q 046424           37 IKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSF-LTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        37 L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~-l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      ++.--...|+..|.+.. +++|..+||+.+++    +.+-+.|-+..|...|+ +...         .+.|.+.+
T Consensus         4 ~k~eR~~~Il~~L~~~~-~~vs~~~La~~l~V----S~~TI~rdi~~L~~~G~~I~~~---------~gGY~L~~   64 (65)
T d1j5ya1           4 VRQERLKSIVRILERSK-EPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT---------PRGYVLAG   64 (65)
T ss_dssp             HHHHHHHHHHHHHHHCS-SCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE---------TTEEECCT
T ss_pred             hHHHHHHHHHHHHHHcC-CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEEe---------CCCEEeCC
Confidence            34445567888887643 37999999999999    99999999999999997 4443         34687753

>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: MexR repressor
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.60  E-value=0.014  Score=42.71  Aligned_cols=67  Identities=13%  Similarity=0.182  Sum_probs=50.7

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYF  115 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l  115 (266)
                      .+.-++..|...+  +.|..+||+.+++    +...+.|++..|...|+|++.. +.+|++ .-.+.+|+.|..+
T Consensus        37 ~q~~vL~~l~~~~--~~t~~~la~~l~~----~~~~vsr~l~~L~~~G~v~r~~-~~~D~R-~~~l~lT~~G~~~  103 (141)
T d1lnwa_          37 PDVHVLKLIDEQR--GLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRER-NPSDQR-SFQLFLTDEGLAI  103 (141)
T ss_dssp             HHHHHHHHHHSST--TCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-CSSSSS-SEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHCC--CCCHHHHHHHHCc----cHhHHHHHHHHHHHhhceeeec-cCCCCc-chhhccCHHHHHH
Confidence            3455777787765  7999999999999    9999999999999999999763 222332 3346777766543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.56  E-value=0.012  Score=47.09  Aligned_cols=65  Identities=11%  Similarity=0.084  Sum_probs=48.4

Q ss_pred             HHHHHccC--CCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeech-HHHhhCC----CCCCceEEeccCCC
Q 046424          191 EILEIYKG--FEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLP-HVLKHAP----SCPGVEHVGGDMFV  255 (266)
Q Consensus       191 ~i~~~~~~--~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~a~----~~~ri~~~~gD~f~  255 (266)
                      .++..++.  .+...+|+|+|||+|..+..+++.. |+=+++.+|+. ..++.++    ..+.+..+.+|--.
T Consensus        61 ~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~  133 (227)
T d1g8aa_          61 AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATK  133 (227)
T ss_dssp             HHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTC
T ss_pred             HHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCC
Confidence            45554442  5667999999999999999999985 88899999995 4555443    34667777777655

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.53  E-value=0.0037  Score=52.87  Aligned_cols=65  Identities=15%  Similarity=0.198  Sum_probs=50.2

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCCC-------CCceEEeccCCCC---CC---CC-CEEE
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPSC-------PGVEHVGGDMFVE---VP---KG-QAIF  264 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~~-------~ri~~~~gD~f~~---~P---~~-D~~~  264 (266)
                      +...+|||++||+|.++..+++..+. +++.+|+ |..++.++.+       ++++++.+|.|+.   ++   .. |+|+
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~-~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi  222 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGAD-EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  222 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCCc-EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence            45689999999999999999988653 7999999 4566666542       6899999999872   22   23 8887


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       223 ~  223 (324)
T d2as0a2         223 L  223 (324)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator TM0710
species: Thermotoga maritima [TaxId: 2336]

Probab=95.34  E-value=0.009  Score=43.66  Aligned_cols=68  Identities=13%  Similarity=0.161  Sum_probs=51.0

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      +.-++..|...|  +.|..+||+.+++    +...+.+++.-|...|+++... +..|++ .-.+.+|+.|..++.
T Consensus        32 q~~iL~~i~~~~--~~t~~~la~~l~i----~~~tvs~~l~~L~~~gli~r~~-~~~D~R-~~~i~LT~~G~~~~~   99 (139)
T d2a61a1          32 QFDILQKIYFEG--PKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTP-DPADRR-AYFLVITRKGEEVIE   99 (139)
T ss_dssp             HHHHHHHHHHHC--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHcC--CCCHHHHHHHhCC----CcccchHHHHHHHhcCeeeeee-ccCCCC-eEEEEECHHHHHHHH
Confidence            344666777776  8999999999999    9999999999999999999762 111111 234788887765553

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.28  E-value=0.015  Score=44.80  Aligned_cols=64  Identities=23%  Similarity=0.318  Sum_probs=49.6

Q ss_pred             HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC--CCCceEEeccCCC
Q 046424          189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS--CPGVEHVGGDMFV  255 (266)
Q Consensus       189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~--~~ri~~~~gD~f~  255 (266)
                      ...+++.+. -....++||+..|.|.++..+++++  .+++.+|. |.+++.++.  .+|++++.++|-+
T Consensus         7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~~--~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~   73 (182)
T d1wg8a2           7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH   73 (182)
T ss_dssp             HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhccc--CcEEEEhhhhhHHHHHhhccccceeEeehHHHH
Confidence            345666655 4567899999999999999999974  58999999 556666553  3789998887765

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.28  E-value=0.006  Score=48.38  Aligned_cols=55  Identities=7%  Similarity=0.036  Sum_probs=45.7

Q ss_pred             CCceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCC-------CCCceEEeccCCC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPS-------CPGVEHVGGDMFV  255 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~-------~~ri~~~~gD~f~  255 (266)
                      ++++||+||+|.|..+..++++.| +-+++.+|.. +..+.++.       .++|+++.||..+
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e  119 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQD  119 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccc
Confidence            689999999999999999999876 5889999985 45555543       2689999999876

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.25  E-value=0.026  Score=43.92  Aligned_cols=70  Identities=13%  Similarity=0.154  Sum_probs=48.2

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCC-CeEEEeechHHHhhCCCCCCceEEeccCCCCCC-CC-CEEE
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ-LRGINFDLPHVLKHAPSCPGVEHVGGDMFVEVP-KG-QAIF  264 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~~~P-~~-D~~~  264 (266)
                      +++... .....+|+|.|||+|.++..+.++++. .+.+++|+-+.....  ..+.....+|++...+ .. |+++
T Consensus        11 m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~--~~~~~~~~~~~~~~~~~~~fd~ii   83 (223)
T d2ih2a1          11 MVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL--PPWAEGILADFLLWEPGEAFDLIL   83 (223)
T ss_dssp             HHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC--CTTEEEEESCGGGCCCSSCEEEEE
T ss_pred             HHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh--cccceeeeeehhccccccccceec
Confidence            444444 445689999999999999999988776 458899985533221  1356777888887433 33 7665

>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=95.23  E-value=0.0019  Score=43.71  Aligned_cols=52  Identities=17%  Similarity=0.210  Sum_probs=42.9

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++|..|||+.+++    ++..+.+++.-|...|+++...    ||+ .-.|.+|+.|..++
T Consensus        21 ~lt~~eLa~~l~i----~~~~vs~~l~~Le~~GlV~r~~----D~R-~~~i~LT~~G~~~l   72 (85)
T d3ctaa1          21 YLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTV----TKR-GQILNITEKGLDVL   72 (85)
T ss_dssp             ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEECHHHHHHH
T ss_pred             CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeec----ccc-cccceECHHHHHHH
Confidence            8999999999999    9999999999999999999862    222 34477888776544

>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator TM0816
species: Thermotoga maritima [TaxId: 2336]

Probab=95.22  E-value=0.0066  Score=44.45  Aligned_cols=68  Identities=21%  Similarity=0.101  Sum_probs=52.5

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .+.-++..|...|  +.|..+||+.+++    +...+.++++-|...|++++.. ++.|++ .-..++|+.|..+.
T Consensus        33 ~q~~iL~~l~~~~--~~t~~~La~~l~i----~~~~vs~~v~~L~~~gli~r~~-~~~D~R-~~~l~lT~~G~~~~  100 (140)
T d2etha1          33 TELYAFLYVALFG--PKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREM-DPVDRR-TYRVVLTEKGKEIF  100 (140)
T ss_dssp             HHHHHHHHHHHHC--CBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEE-CTTTSS-CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeee-cccccc-hhhhhcCHHHHHHH
Confidence            4556788888887  8999999999999    9999999999999999999763 122221 23577787776444

>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.17  E-value=0.0065  Score=38.33  Aligned_cols=43  Identities=16%  Similarity=0.266  Sum_probs=39.2

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .|+..|.+ +  |+|-.|||+.+|+    +..-+.++++-|...|++.+.
T Consensus         3 ~Il~~i~~-~--pisr~eLa~~~gl----s~~TVs~~v~~L~~~GlV~e~   45 (62)
T d2hoea1           3 RILKRIMK-S--PVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEE   45 (62)
T ss_dssp             CSHHHHHH-S--CBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHH-C--CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC
Confidence            47788876 4  8999999999999    999999999999999999976

>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein BC1842
species: Bacillus cereus [TaxId: 1396]

Probab=95.15  E-value=0.0073  Score=44.34  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=37.0

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      +.|.++||+.+++    ++..++++|..|...|+|+..+     |  .|-|.+..
T Consensus        23 ~vss~~IA~~~~i----~~~~l~kil~~L~~aGlv~S~r-----G--~GG~~L~~   66 (138)
T d1ylfa1          23 LCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR-----G--PGGAGLLK   66 (138)
T ss_dssp             GCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESS
T ss_pred             cCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec-----C--CCCceecC
Confidence            8999999999999    9999999999999999999763     3  35576653

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.12  E-value=0.0038  Score=48.28  Aligned_cols=64  Identities=16%  Similarity=0.047  Sum_probs=48.5

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC-------CCCceEEeccCCCC------CCCC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS-------CPGVEHVGGDMFVE------VPKG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~-------~~ri~~~~gD~f~~------~P~~-D~~~l  265 (266)
                      ...+|||+.||+|.++.+.+.+... +++.+|.. .+++.++.       .++++++.+|.++-      .... |++++
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl  119 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  119 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence            4589999999999999999998765 78888985 35555543       25899999998762      1223 88876

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.029  Score=46.07  Aligned_cols=70  Identities=13%  Similarity=0.260  Sum_probs=51.1

Q ss_pred             HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCC----C---CCCceEEeccCCC-CCCC
Q 046424          189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAP----S---CPGVEHVGGDMFV-EVPK  259 (266)
Q Consensus       189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~----~---~~ri~~~~gD~f~-~~P~  259 (266)
                      ...+++... .....+|++||+|.|.+...|+++.+  +.+.++..+ .++..+    .   .++++++.+|+++ ++|.
T Consensus        10 ~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~   86 (278)
T d1zq9a1          10 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF   86 (278)
T ss_dssp             HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred             HHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh
Confidence            445666665 66678999999999999999999965  667777643 232222    2   2689999999999 6665


Q ss_pred             CC
Q 046424          260 GQ  261 (266)
Q Consensus       260 ~D  261 (266)
                      .+
T Consensus        87 ~~   88 (278)
T d1zq9a1          87 FD   88 (278)
T ss_dssp             CS
T ss_pred             hh
Confidence            43

>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator OEOE1854
species: Oenococcus oeni [TaxId: 1247]

Probab=95.00  E-value=0.0096  Score=43.19  Aligned_cols=70  Identities=14%  Similarity=0.255  Sum_probs=52.3

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.++..|...+++++|..|||+.+++    +...+.+++.-|...|+++... +..|++ .-.+.+|+.|..+.
T Consensus        30 ~q~~vL~~l~~~~~~~it~~ela~~~~~----~~~~vs~~l~~L~~~g~v~r~~-~~~D~R-~~~i~lT~~G~~~~   99 (135)
T d3broa1          30 TQMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKV-SGKDSR-QKCLKLTKKANKLE   99 (135)
T ss_dssp             HHHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHTTH
T ss_pred             HHHHHHHHHHHcCCCCCCHHHHHHHHCc----CHhHHHHHHHHHHHHHHHHHHh-hhhhhh-hhhhcccHHHHHHH
Confidence            4445677777654347999999999999    9999999999999999998763 111221 33588888777544

>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Hypothetical protein PH1932
domain: Hypothetical protein PH1932
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.00  E-value=0.0087  Score=46.26  Aligned_cols=74  Identities=16%  Similarity=0.254  Sum_probs=54.4

Q ss_pred             HHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcc
Q 046424           34 PMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSK  113 (266)
Q Consensus        34 ~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~  113 (266)
                      ..+|.--.++.|+..|.. +  |+|+.|||+.+|+    ++..+.+.|+.|...|+|+........|...-.|.+|..+.
T Consensus        13 ~~~l~~p~R~~Il~~L~~-~--~~s~~ela~~lg~----s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~~~~   85 (190)
T d1ulya_          13 IKVMLEDTRRKILKLLRN-K--EMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADVF   85 (190)
T ss_dssp             HHHHHSHHHHHHHHHHTT-C--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSEE
T ss_pred             HHHhCCHHHHHHHHHHHh-C--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeeccCCcceEEEEEcccce
Confidence            345555677889999975 4  9999999999999    99999999999999999975421001222234588886544


Q ss_pred             c
Q 046424          114 Y  114 (266)
Q Consensus       114 ~  114 (266)
                      .
T Consensus        86 ~   86 (190)
T d1ulya_          86 Y   86 (190)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator YusO
species: Bacillus subtilis [TaxId: 1423]

Probab=94.92  E-value=0.015  Score=42.61  Aligned_cols=68  Identities=22%  Similarity=0.202  Sum_probs=51.2

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .+..++..|...|  +.|..+||+.+++    ++..+.+++.-|...|+++..+ +..|++ .-.+.+|+.|..+.
T Consensus        36 ~q~~iL~~l~~~~--~~t~~~la~~~~i----~~~~vs~~l~~L~~~glv~r~~-~~~D~R-~~~v~lT~~G~~~~  103 (143)
T d1s3ja_          36 AQLFVLASLKKHG--SLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTH-NTKDRR-VIDLSLTDEGDIKF  103 (143)
T ss_dssp             HHHHHHHHHHHHS--EEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHhhhheeee-ecCCCC-ceEEEECHHHHHHH
Confidence            3344777787776  8999999999999    9999999999999999999763 112221 23477887776544

>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator MgrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.85  E-value=0.0078  Score=43.89  Aligned_cols=68  Identities=15%  Similarity=0.195  Sum_probs=51.6

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .+..++..|...+  +.|..+||+.+++    +...+.++++-|...|+++..+ ++.|++ .-.+++|+.|..+.
T Consensus        35 ~q~~vL~~i~~~~--~~t~~~la~~l~~----~~~~~s~~l~~L~~~Gli~r~~-~~~D~R-~~~l~lT~~G~~~~  102 (136)
T d2bv6a1          35 PQFLVLTILWDES--PVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRER-SEVDQR-EVFIHLTDKSETIR  102 (136)
T ss_dssp             HHHHHHHHHHHSS--EEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCC--CCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEEee-cCCccc-chhhccCHHHHHHH
Confidence            3445777787776  8999999999999    9999999999999999999763 122222 23467888776443

>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Archaeal DNA-binding protein
domain: Sso10a (SSO10449)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.80  E-value=0.0086  Score=40.73  Aligned_cols=49  Identities=12%  Similarity=0.171  Sum_probs=44.2

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      +.+...|...+++    +...+...|..|...|+++..         ++.|.+|+.|..|+.
T Consensus        18 g~~kT~i~~~aNL----s~~~~~kyl~~L~~~GLI~~~---------~~~Y~iT~kG~~~L~   66 (90)
T d1r7ja_          18 GSPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE---------GKQYMLTKKGEELLE   66 (90)
T ss_dssp             CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHHH
T ss_pred             CCCccHHHHHcCC----CHHHHHHHHHHHHHCCCeeec---------CCEEEECccHHHHHH
Confidence            4578999999999    999999999999999999876         688999999887764

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.76  E-value=0.013  Score=36.55  Aligned_cols=47  Identities=19%  Similarity=0.268  Sum_probs=41.8

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|..+|.+++  ..|..+||+.+|+    ++..+.+-++-|...|++...
T Consensus         4 ~D~kIl~~L~~n~--r~s~~~lA~~~gl----s~~~v~~Ri~~L~~~giI~~~   50 (60)
T d1i1ga1           4 RDKIILEILEKDA--RTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEGY   50 (60)
T ss_dssp             HHHHHHHHHHHCT--TCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeE
Confidence            3567888998886  8999999999999    999999999999999999843

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical protein AF2008
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.67  E-value=0.0083  Score=42.20  Aligned_cols=44  Identities=18%  Similarity=0.308  Sum_probs=39.2

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .|+-+|...|  +.|+.|||+.+|+    +...+.++|.-|...|+|.+.
T Consensus        24 ~v~~~L~~~g--~~t~~eia~~~~i----~~~~v~~~l~~L~~~GlV~r~   67 (109)
T d1sfxa_          24 RIYSLLLERG--GMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE   67 (109)
T ss_dssp             HHHHHHHHHC--CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHhcC--CCCHHHHHHHhCC----CcchHHHHHHHHHhCCCEEEE
Confidence            4666776766  9999999999999    999999999999999999865

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=94.65  E-value=0.024  Score=47.35  Aligned_cols=66  Identities=11%  Similarity=0.118  Sum_probs=48.9

Q ss_pred             CCCceEEEecCCccHHHHHHHHH-----CCCCeEEEeech-HHHhhCCC-----CCCceEEeccCCCCCCC-C-CEEEe
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSK-----YPQLRGINFDLP-HVLKHAPS-----CPGVEHVGGDMFVEVPK-G-QAIFM  265 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~-----~P~l~~~v~Dlp-~vi~~a~~-----~~ri~~~~gD~f~~~P~-~-D~~~l  265 (266)
                      ....+|+|.+||+|.++.++.++     .++.+.+++|+. ..+..|+.     ...+.+..+|.+...+. . |+++.
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~  194 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS  194 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence            35679999999999999998764     456678999984 45554443     26778888998886554 3 88864

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.58  E-value=0.017  Score=36.01  Aligned_cols=47  Identities=13%  Similarity=0.146  Sum_probs=42.3

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ++..|...|..++  ..|..+||+.+|+    ++..+.+=++-|...|++...
T Consensus         4 ~D~~Il~~L~~n~--r~s~~eiA~~l~l----s~~~v~~Ri~~L~~~giI~~~   50 (60)
T d2cyya1           4 IDKKIIKILQNDG--KAPLREISKITGL----AESTIHERIRKLRESGVIKKF   50 (60)
T ss_dssp             HHHHHHHHHHHCT--TCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeE
Confidence            5677899999886  8999999999999    999999999999999999843

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.012  Score=47.89  Aligned_cols=64  Identities=13%  Similarity=0.181  Sum_probs=48.8

Q ss_pred             HHHHHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC----CCCceEEeccCCC
Q 046424          189 MKEILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS----CPGVEHVGGDMFV  255 (266)
Q Consensus       189 ~~~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~----~~ri~~~~gD~f~  255 (266)
                      ...+++... .+....|++||+|.|.+...|+++..  +.+.+|+.+ .++..+.    .++++++.+|+.+
T Consensus        10 ~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~   78 (252)
T d1qyra_          10 IDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhhccchhHHhhhhhh
Confidence            445667666 66778999999999999999999864  577777754 4444433    2789999999987

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.084  Score=41.25  Aligned_cols=64  Identities=14%  Similarity=0.056  Sum_probs=46.8

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech--------HHHhhCCCCCCceEEeccCCCCCCC--CCEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP--------HVLKHAPSCPGVEHVGGDMFVEVPK--GQAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp--------~vi~~a~~~~ri~~~~gD~f~~~P~--~D~~~l  265 (266)
                      ...+++|||.|.|.=++-++-.+|+++++++|.-        +++.... ..+|+++....-+-.+.  .|+++-
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~-L~nv~v~~~R~E~~~~~~~fD~V~s  138 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK-LENIEPVQSRVEEFPSEPPFDGVIS  138 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-CSSEEEEECCTTTSCCCSCEEEEEC
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcC-Ccceeeeccchhhhccccccceehh
Confidence            3478999999999999999999999999999984        3333332 25778777766653232  377753

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=94.29  E-value=0.061  Score=41.10  Aligned_cols=61  Identities=26%  Similarity=0.248  Sum_probs=46.5

Q ss_pred             HHHHHccCCCCCceEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhhCCCCCCceEEeccCCC
Q 046424          191 EILEIYKGFEGLNQLVDVAGGLGANLKSIVSKY-PQLRGINFDLPHVLKHAPSCPGVEHVGGDMFV  255 (266)
Q Consensus       191 ~i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~-P~l~~~v~Dlp~vi~~a~~~~ri~~~~gD~f~  255 (266)
                      .+-+.|+-+++..+|||+||+.|.++.-+.++. +.-+++.+|+-+.    +..+.+.++.+|+.+
T Consensus        12 EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~   73 (180)
T d1ej0a_          12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRD   73 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTS
T ss_pred             HHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeeccccc
Confidence            455666645778899999999999999888764 4577899998542    334678888888875

>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA3067
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.26  E-value=0.019  Score=42.10  Aligned_cols=69  Identities=17%  Similarity=0.232  Sum_probs=50.1

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++.++..|...+ +++|..+||+.+++    +...+.+++.-|...|+|+... +..|.+ .-.+.+|+.|..+.
T Consensus        35 ~q~~vL~~L~~~~-g~~t~~~La~~~~~----~~~~vs~~i~~L~~~glv~r~~-~~~DrR-~~~i~LT~~G~~~~  103 (145)
T d2hr3a1          35 SQLVVLGAIDRLG-GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHA-DPQDGR-RTRVSLSSEGRRNL  103 (145)
T ss_dssp             HHHHHHHHHHHTT-SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC--------CCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeee-Cccchh-HHHhccCHHHHHHH
Confidence            4566777776543 27999999999999    9999999999999999999762 111221 23477787776544

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=94.24  E-value=0.018  Score=36.20  Aligned_cols=47  Identities=23%  Similarity=0.407  Sum_probs=42.1

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|.++|..++  ..|..+||+.+|+    ++..+.+=++-|...|++...
T Consensus         6 ~D~~IL~~L~~n~--r~s~~~iA~~lgi----s~~tv~~Ri~~L~~~giI~~~   52 (63)
T d2cfxa1           6 IDLNIIEELKKDS--RLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQY   52 (63)
T ss_dssp             HHHHHHHHHHHCS--CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeE
Confidence            4567889999887  8999999999999    999999999999999999843

>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Multiple antibiotic resistance repressor, MarR
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.013  Score=42.73  Aligned_cols=68  Identities=19%  Similarity=0.145  Sum_probs=51.8

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .+..++..|...|  +.|..|||+.+++    +...+.+++.-|...|+++... +..|++ .-.+++|+.|..+.
T Consensus        35 ~q~~vL~~l~~~~--~~t~~ela~~~~i----~~~~vs~~v~~L~~~glv~r~~-~~~D~R-~~~i~lT~~G~~~~  102 (138)
T d1jgsa_          35 AQFKVLCSIRCAA--CITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP-NPNDKR-GVLVKLTTGGAAIC  102 (138)
T ss_dssp             HHHHHHHHHHHHS--SBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CTTCSS-CEEEEECHHHHHHH
T ss_pred             HHHHHHHhHHhCc--CCCHHHHHHHHCC----CHhHHHHHHHHHhhCCCEEEee-ccCCCC-eeEEEECHHHHHHH
Confidence            4455677777776  8999999999999    9999999999999999999763 122222 33588888776554

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.0036  Score=50.30  Aligned_cols=41  Identities=10%  Similarity=-0.081  Sum_probs=30.2

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCC
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAP  241 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~  241 (266)
                      .+..+|||||||+|.++..+++... -+++++|+. ..++.++
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~   91 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELE   91 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHH
Confidence            3568999999999998776665543 268999995 4666554

>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.021  Score=35.92  Aligned_cols=47  Identities=17%  Similarity=0.282  Sum_probs=42.1

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .+..|...|..++  ..|..+||+.+|+    ++..+.+=++-|...|++...
T Consensus         6 ~D~~IL~~L~~~~--r~s~~eiA~~l~l----s~~~v~~Ri~rL~~~GiI~~~   52 (63)
T d2cg4a1           6 LDRGILEALMGNA--RTAYAELAKQFGV----SPETIHVRVEKMKQAGIITGA   52 (63)
T ss_dssp             HHHHHHHHHHHCT--TSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHHcC--CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeE
Confidence            4567889998886  8999999999999    999999999999999999853

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.025  Score=44.84  Aligned_cols=56  Identities=7%  Similarity=-0.002  Sum_probs=45.8

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCC-------CCCceEEeccCCC
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPS-------CPGVEHVGGDMFV  255 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~-------~~ri~~~~gD~f~  255 (266)
                      .++++||+||++.|..+..++++-| +-+.+.+|.. +..+.|+.       .++|+++.||..+
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e  122 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE  122 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhh
Confidence            4789999999999999999999987 6888999885 34444443       3789999999765

>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Pleiotropic regulator of virulence genes, SarA
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.60  E-value=0.017  Score=40.88  Aligned_cols=67  Identities=9%  Similarity=0.154  Sum_probs=48.5

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      .++..|...+.+++|..+||+.+++    +...+.++++-|...|++...+ ++.|++ .-...+|+.|..+.
T Consensus        37 ~vL~~l~~~~~~~~t~~~la~~l~~----~~~tvs~~i~~Le~~gli~r~~-~~~D~R-~~~i~LT~~G~~~~  103 (115)
T d2frha1          37 AVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKR-NEHDER-TVLILVNAQQRKKI  103 (115)
T ss_dssp             HHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBC-CSSSSC-CCEEECCSHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHCC----CHhHHHHHHHHHHhhhhheeee-cccCCc-eEEEEECHHHHHHH
Confidence            3445565543236899999999999    9999999999999999999873 122322 33477787776433

>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Organic hydroperoxide resistance transcriptional regulator OhrR
species: Bacillus subtilis [TaxId: 1423]

Probab=93.53  E-value=0.02  Score=41.65  Aligned_cols=67  Identities=19%  Similarity=0.174  Sum_probs=51.8

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      ..++..|...+  ++|..+||+.+++    ++..+.+++.-|...|+|...+ ++.|++ .-...+|+.|..+..
T Consensus        36 ~~vL~~l~~~~--~~t~~~La~~~~i----~~~~vsr~i~~L~~~glv~r~~-~~~D~R-~~~i~lT~~G~~~~~  102 (137)
T d1z91a1          36 YLALLLLWEHE--TLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKR-SEEDER-SVLISLTEDGALLKE  102 (137)
T ss_dssp             HHHHHHHHHHS--EEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCB-CSSCTT-SBEEEECHHHHSGGG
T ss_pred             HHHHHHHHcCC--CCCHHHHHHHHCc----CHHHHHHHHHHHhhccceEEee-cCCCCC-eEEEEECHHHHHHHH
Confidence            34566776666  8999999999999    9999999999999999999763 112222 334788998887664

>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA4135
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.40  E-value=0.012  Score=42.76  Aligned_cols=67  Identities=15%  Similarity=0.137  Sum_probs=50.5

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      +..++..|...|  +.|..+||+.+++    +...+.++++-|...|+++... +..|++ .-...+|+.|..+.
T Consensus        32 q~~vL~~l~~~~--~~t~~~la~~~~i----~~~~vs~~i~~L~~~gli~r~~-~~~D~R-~~~l~lT~~G~~~~   98 (136)
T d2fbia1          32 QWRVIRILRQQG--EMESYQLANQACI----LRPSMTGVLARLERDGIVRRWK-APKDQR-RVYVNLTEKGQQCF   98 (136)
T ss_dssp             HHHHHHHHHHHC--SEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcC--CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEee-cCccCc-hhhhccCHHHHHHH
Confidence            445667777776  8999999999999    9999999999999999999763 111211 23377787776544

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=93.39  E-value=0.011  Score=47.22  Aligned_cols=56  Identities=9%  Similarity=0.077  Sum_probs=45.4

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCC-CCeEEEeech-HHHhhCCC-------CCCceEEeccCCC
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYP-QLRGINFDLP-HVLKHAPS-------CPGVEHVGGDMFV  255 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~a~~-------~~ri~~~~gD~f~  255 (266)
                      .++++||+||.+.|..+..+++..| +-+.+.+|.. +.++.|+.       .++|+++.||..+
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~  122 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP  122 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHH
Confidence            3789999999999999999999988 5788888874 44444443       2789999999876

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=93.36  E-value=0.017  Score=40.33  Aligned_cols=44  Identities=16%  Similarity=0.237  Sum_probs=37.1

Q ss_pred             ChhHHHh-hcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           44 GLLEIMA-KASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        44 glfd~L~-~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .|+..|. ..|  ++|..|||+.+++    ++..+.+++.-|...|+|.+.
T Consensus        25 ~iL~~L~~~~~--~~t~~eLa~~~~i----~~~tvs~~l~~L~~~GlV~r~   69 (109)
T d2d1ha1          25 AVLLKMVEIEK--PITSEELADIFKL----SKTTVENSLKKLIELGLVVRT   69 (109)
T ss_dssp             HHHHHHHHHCS--CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHcCC--CCCHHHHHHHHCc----cHhHHHHHHHHHHHCCCEEEe
Confidence            3454443 344  8999999999999    999999999999999999876

>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtcD
species: Bacillus subtilis [TaxId: 1423]

Probab=92.99  E-value=0.048  Score=37.19  Aligned_cols=56  Identities=16%  Similarity=0.173  Sum_probs=43.4

Q ss_pred             CCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccccC
Q 046424           56 QLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        56 ~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~~  117 (266)
                      +....||.+.+ |+    ++.-|.+=|+-|...|++++... . +....-.|++|+.|..|.+
T Consensus        24 ~~rF~el~~~l~gi----s~~~Ls~rLk~Le~~glv~r~~~-~-~~p~~veY~LT~~G~~L~p   80 (95)
T d2hzta1          24 KKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVY-N-QVPPKVEYELSEYGRSLEG   80 (95)
T ss_dssp             CBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEE-C-SSSCEEEEEECTTGGGGHH
T ss_pred             CCCHHHHHHHhhcC----ChhHHHHHHHHHHHhHHHhheec-c-ccccchhhhhhhhHHHHHH
Confidence            88999999998 89    99999999999999999997621 1 0000223999998886663

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=92.74  E-value=0.093  Score=44.09  Aligned_cols=65  Identities=11%  Similarity=0.265  Sum_probs=49.0

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhhCCC------CCCceEEeccCCCCCC------CC-CEEE
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL-PHVLKHAPS------CPGVEHVGGDMFVEVP------KG-QAIF  264 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~a~~------~~ri~~~~gD~f~~~P------~~-D~~~  264 (266)
                      ..+..+|+|+-||.|.++..|+++.-  +++.+|. ++.++.|+.      ..+++|+.+|..+.++      .. |+++
T Consensus       210 ~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi  287 (358)
T d1uwva2         210 VQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL  287 (358)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred             cCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence            45678999999999999999988754  6788887 456666553      2789999998887432      22 8877


Q ss_pred             e
Q 046424          265 M  265 (266)
Q Consensus       265 l  265 (266)
                      +
T Consensus       288 l  288 (358)
T d1uwva2         288 L  288 (358)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.72  E-value=0.023  Score=47.43  Aligned_cols=65  Identities=9%  Similarity=0.051  Sum_probs=49.8

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCCC--------CCceEEeccCCCCC------CCC-CE
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPSC--------PGVEHVGGDMFVEV------PKG-QA  262 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~~--------~ri~~~~gD~f~~~------P~~-D~  262 (266)
                      .++..+|||+.||+|.++..++...  .++|.+|.. ..++.++++        .+++++.+|.|+-+      ... |+
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~G--A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~  207 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI  207 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhCC--CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence            4467899999999999999988764  589999995 466666542        47999999998732      123 88


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      |++
T Consensus       208 Iil  210 (309)
T d2igta1         208 ILT  210 (309)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.72  E-value=0.027  Score=41.33  Aligned_cols=65  Identities=12%  Similarity=0.069  Sum_probs=47.9

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      -++-.|...+  +.|..+||+.+++    +...+.++++-|...|+++..+ ++.|++ .-...+|+.|..+.
T Consensus        33 ~iL~~i~~~~--~~t~~~la~~l~i----~~~tvs~~l~~L~~~glI~r~~-~~~D~R-~~~l~LT~~G~~~~   97 (144)
T d1lj9a_          33 LYLVRVCENP--GIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQE-DASNKK-IKRIYATEKGKNVY   97 (144)
T ss_dssp             HHHHHHHHST--TEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHHH
T ss_pred             HHHHHHHhCC--CCCHHHHHHHHCc----cHhhHHHHHHHHHhhhcccccC-CCCCCC-ccccccCHHHHHHH
Confidence            3555666766  7999999999999    9999999999999999999763 122221 22466777665443

>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator PA3341
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.72  E-value=0.036  Score=40.06  Aligned_cols=65  Identities=20%  Similarity=0.219  Sum_probs=46.0

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++-.|...+ ++.|..+||+.+++    +...+.++++-|...|+++... ++.|++ .-...+|+.|..+.
T Consensus        33 iL~~l~~~~-~~~t~~~la~~~~~----~~~~vs~~v~~L~~~gli~r~~-~~~D~R-~~~i~lT~~G~~~~   97 (137)
T d2fbha1          33 VLLHLARHR-DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLA-VAEDRR-AKHIVLTPKADVLI   97 (137)
T ss_dssp             HHHHHHHCS-SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-CBTTBC-SCEEEECTTHHHHH
T ss_pred             HHHHHHHcC-CCCcHHHHHHHHCC----CHHHHHHHHHHHHHcCCccccC-CCCCCC-chhhhcCHHHHHHH
Confidence            445555443 26899999999999    9999999999999999999762 112221 22366776655443

>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.71  E-value=0.035  Score=39.84  Aligned_cols=69  Identities=14%  Similarity=0.151  Sum_probs=49.4

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      +.-|+..|...++++++..+||+.+++    +...+.++++-|...|+|++.+ +..|.+ .-...+|+.|..++
T Consensus        35 q~~vL~~l~~~~~~~~~~~~ia~~l~~----~~~~vs~~v~~L~~~glV~r~~-~~~D~R-~v~i~LT~~G~~~~  103 (125)
T d1p4xa2          35 EFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER-STEDER-KILIHMDDAQQDHA  103 (125)
T ss_dssp             HHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE-CSSSTT-CEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHccCCCccHHHHHHHHCC----CcchHHHHHHHHHhccCEeeee-cCCCCC-eEEEEECHHHHHHH
Confidence            334667775543337899999999999    9999999999999999999763 122222 33367777665443

>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarR
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.67  E-value=0.035  Score=39.18  Aligned_cols=66  Identities=23%  Similarity=0.224  Sum_probs=46.6

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhcccc
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYF  115 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l  115 (266)
                      .++..|.....++.|..+||+.+++    +...+.+++.-|...|++.+.+ +..|++ .-...+|+.|..+
T Consensus        36 ~vL~~l~~~~~~~~t~~ela~~l~~----~~~~vs~~i~~Le~~gli~r~~-~~~D~R-~~~i~LT~~G~~~  101 (115)
T d1hsja1          36 YILNHILRSESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKR-SLQDER-TVIVYVTDTQKAN  101 (115)
T ss_dssp             HHHHHHHTCSCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEE-CCSSSS-CCEEECCSSHHHH
T ss_pred             HHHHHHHccCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHcCCeEEEe-ecCCCc-eEEEEECHHHHHH
Confidence            3555565322237999999999999    9999999999999999999763 112222 2336667655543

>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Manganese transport regulator MntR
species: Bacillus subtilis [TaxId: 1423]

Probab=92.55  E-value=0.05  Score=33.91  Aligned_cols=43  Identities=19%  Similarity=0.328  Sum_probs=36.4

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      |+.+..+.+  +.+..+||+.+|+    ++.-+..+++-|...|+|+..
T Consensus        12 I~~l~~~~~--~v~~~~iA~~L~v----s~~SVs~mikrL~~~GlV~~~   54 (61)
T d2ev0a1          12 IYMLIEEKG--YARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE   54 (61)
T ss_dssp             HHHHHHHHS--SCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred             HHHHHhcCC--CccHHHHHHHhCC----CchhHHHHHHHHHHCCCEEEc
Confidence            344454555  8999999999999    999999999999999999975

>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ReutB4095-like
domain: Putative DNA-binding protein ReutB4095
species: Ralstonia eutropha [TaxId: 106590]

Probab=92.37  E-value=0.074  Score=34.27  Aligned_cols=64  Identities=22%  Similarity=0.217  Sum_probs=49.7

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      +.++-.+.+.++-|+..|+++.++    +-..|+|.|..|.+.|+++..-  .+||  .+.=++|+.+..+.
T Consensus        13 L~eA~~e~~g~~WSLaklsKra~~----PMS~LRR~LTqL~~aGl~~t~~--~edG--~G~A~Lt~~G~~lc   76 (81)
T d2obpa1          13 LREAGIENGATPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSV--EADG--RGHASLTQEGAALA   76 (81)
T ss_dssp             HHHHTSSTTCCCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE--CTTS--CEEEEECHHHHHHH
T ss_pred             HHHHhccCCCCCccHHHHHhhcCC----cHHHHHHHHHHHhhcCceeeee--ccCC--cceeeccHHHHHHH
Confidence            445554544459999999999999    8889999999999999998652  2456  67888888776543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=92.33  E-value=0.02  Score=47.96  Aligned_cols=63  Identities=13%  Similarity=0.095  Sum_probs=47.3

Q ss_pred             CCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC------CCCceEEeccCCCC---CC---CC-CEEEe
Q 046424          201 GLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS------CPGVEHVGGDMFVE---VP---KG-QAIFM  265 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~------~~ri~~~~gD~f~~---~P---~~-D~~~l  265 (266)
                      ...+|+|++||+|.++.+++..  ..+++.+|.. ..++.+++      .++++++.+|.|+.   .+   .. |+|++
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            4589999999999999998765  3468999995 46666554      26799999998862   22   23 88875

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=92.32  E-value=0.042  Score=44.07  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=32.1

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP  234 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp  234 (266)
                      ++...+++|||.|.|.=++-++=.+|+++++++|.-
T Consensus        68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~  103 (239)
T d1xdza_          68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSL  103 (239)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESC
T ss_pred             ccCCCeEEeecCCCchHHHHHHHhCCCccceeecch
Confidence            445689999999999999999999999999999984

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.015  Score=47.20  Aligned_cols=40  Identities=10%  Similarity=-0.086  Sum_probs=29.0

Q ss_pred             CCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhC
Q 046424          200 EGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHA  240 (266)
Q Consensus       200 ~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a  240 (266)
                      .+..+++|||||+|.+....+.++.. ++++.|.. ..++.+
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~   93 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQEL   93 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHH
Confidence            35689999999999876555545443 78999995 455554

>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.28  E-value=0.041  Score=39.40  Aligned_cols=69  Identities=17%  Similarity=0.166  Sum_probs=49.4

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ++-|+..|...+.+++|..|||+.+++    +...+.++++-|...|+|+..+ ...|.+ .-...+|+.|...+
T Consensus        36 q~~iL~~l~~~~~~~~t~~eia~~~~~----~~~~vs~~l~~L~~~g~v~r~~-~~~D~R-~~~i~lT~~G~~~~  104 (125)
T d1p4xa1          36 EFILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVR-SKIDER-NTYISISEEQREKI  104 (125)
T ss_dssp             HHHHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEE-CSSSTT-SEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHhccCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCceeec-ccCCCC-eEEEEECHHHHHHH
Confidence            444666675544347999999999999    9999999999999999999773 111221 23366777665443

>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Dlm-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.85  E-value=0.055  Score=32.30  Aligned_cols=47  Identities=11%  Similarity=0.199  Sum_probs=41.3

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      |-.|+..|.++| .|.-..+|+++|.+    +...+.++|..|...+-+...
T Consensus         3 EQkILQVL~dag-spvk~~ql~k~cqV----pkk~lNqVL~rlkke~kVsl~   49 (57)
T d1j75a_           3 EQKILQVLSDDG-GPVKIGQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP   49 (57)
T ss_dssp             HHHHHHHHHHHC-SCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHhcC-CchHHHHHHHHHCC----CHHHHHHHHHHHHhccccccC
Confidence            456888898877 49999999999999    888999999999998888866

>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Iron-dependent regulator IdeR
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.67  E-value=0.11  Score=32.44  Aligned_cols=34  Identities=12%  Similarity=0.129  Sum_probs=32.5

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +.+..+||+.+|+    ++.-+..+++-|...|++...
T Consensus        23 ~v~~~~iA~~L~v----s~~SVt~mvkrL~~~Glv~~~   56 (63)
T d2isya1          23 TPLRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA   56 (63)
T ss_dssp             CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred             CCcHHHHHHHhCC----CchhHHHHHHHHHHCCCEEEc
Confidence            8999999999999    999999999999999999976

>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.66  E-value=0.04  Score=39.93  Aligned_cols=68  Identities=15%  Similarity=0.130  Sum_probs=47.7

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      +..++..|...+ .+.|..+||+.+++    +...+.++++-|...|+++... ++.|++ .-.+++|+.|..+.
T Consensus        33 ~~~~L~~l~~~~-~~~t~~~la~~l~i----~~~~vs~~l~~L~~~glI~~~~-~~~D~R-~~~l~lT~~G~~~~  100 (140)
T d3deua1          33 HWVTLHNIHQLP-PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQT-CASDRR-AKRIKLTEKAEPLI  100 (140)
T ss_dssp             HHHHHHHHHHSC-SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CEEEECGGGHHHH
T ss_pred             HHHHHHHHHHcC-CCccHHHHHHHHCC----CHhHHHHHHHHHHhCCCEEecc-cCCCCC-ceeeEECHHHHHHH
Confidence            344566666533 26999999999999    9999999999999999999762 111221 23588888776544

>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding protein Mj223
domain: DNA-binding protein Mj223
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.59  E-value=0.047  Score=39.97  Aligned_cols=47  Identities=17%  Similarity=0.157  Sum_probs=39.6

Q ss_pred             hhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           42 ELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        42 ~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      +..|+..|-.++ +|+|+.|||+.+|+    +...+.+.++-|...|+|...
T Consensus        28 ~~~i~~~L~~~~-~plt~~ela~~l~v----sk~~vs~~l~~L~~~GlV~r~   74 (151)
T d1ku9a_          28 VGAVYAILYLSD-KPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV   74 (151)
T ss_dssp             HHHHHHHHHHCS-SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHhCC-CCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCEEEE
Confidence            334666775444 38999999999999    999999999999999999866

>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PG0823
species: Porphyromonas gingivalis [TaxId: 837]

Probab=91.57  E-value=0.049  Score=37.65  Aligned_cols=81  Identities=15%  Similarity=0.218  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccC
Q 046424           19 QDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSN   97 (266)
Q Consensus        19 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~   97 (266)
                      =+....++++.+-|....|+.         |.. |  +..+.||.+.+ |+    ++.-|..=|+-|...|+|.+... .
T Consensus         8 Cpv~~~l~ilg~kW~l~Il~~---------L~~-g--~~rF~el~~~l~gI----s~~~Ls~rLkeL~~~glv~r~~~-~   70 (102)
T d2fswa1           8 CPVRKSMQIFAGKWTLLIIFQ---------INR-R--IIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQY-P   70 (102)
T ss_dssp             CHHHHHHHHHTSSSHHHHHHH---------HTT-S--CEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEE-C
T ss_pred             CCHHHHHHHHcCCCHHHHHHH---------Hcc-C--CCCHHHHHhhCccc----chhHHHHHHHHHHHCCceeeccc-C
Confidence            467778888888887666543         333 4  89999999998 89    99999999999999999987521 1


Q ss_pred             CCCccccceecchhcccccC
Q 046424           98 KDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        98 ~~~~~~~~y~~t~~s~~l~~  117 (266)
                       .....-.|++|+.|..|.+
T Consensus        71 -~~p~~veY~LT~~G~~L~p   89 (102)
T d2fswa1          71 -EVPPRVEYSLTPLGEKVLP   89 (102)
T ss_dssp             -SSSCEEEEEECHHHHTTHH
T ss_pred             -CCCCeehhhhhHhHHHHHH
Confidence             0100234999999986653

>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Protease production regulatory protein Hpr
species: Bacillus subtilis [TaxId: 1423]

Probab=91.51  E-value=0.035  Score=41.75  Aligned_cols=66  Identities=18%  Similarity=0.020  Sum_probs=49.0

Q ss_pred             hChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           43 LGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        43 lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      ..|+..|...+  ++|..+||+.+++    +...+.+++.-|...|+++..+ +..|.+ .-..++|+.|..+.
T Consensus        44 ~~vL~~l~~~~--~~t~~~la~~~~l----~~~tvs~~i~rL~~~gli~r~~-~~~D~R-~~~l~lT~~G~~~~  109 (162)
T d2fxaa1          44 HHILWIAYQLN--GASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSK-RLNDKR-NTYVQLTEEGTEVF  109 (162)
T ss_dssp             HHHHHHHHHHT--SEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEEC-C-------CEEEECHHHHHHH
T ss_pred             HHHHhhhccCC--CcCHHHHHHHHcC----CchhhHHHHHHHHHCCCceeec-ccccCe-eeeeccCHhHHHHH
Confidence            34677787776  8999999999999    9999999999999999999763 111221 23477787776554

>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.49  E-value=0.088  Score=32.09  Aligned_cols=43  Identities=21%  Similarity=0.282  Sum_probs=36.7

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      .|..|.++  ...|+.+||.++++    ....+.|+|..|...|.+.+.
T Consensus         7 ~l~~lg~~--~~~tA~~LA~kl~v----pKk~iNr~LYsL~~kgkl~k~   49 (59)
T d2gxba1           7 FLEELGEG--KATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE   49 (59)
T ss_dssp             HHHHHCTT--CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHhcCCc--cchhHHHHHHHhCC----cHHHHHHHHHHHHHccchhhc
Confidence            44555443  38999999999999    899999999999999999976

>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein EF0647
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.04  E-value=0.059  Score=37.65  Aligned_cols=81  Identities=16%  Similarity=0.143  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccC
Q 046424           19 QDFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSN   97 (266)
Q Consensus        19 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~   97 (266)
                      -+....++++.+-|....|.         .|.. |  +..+.||.+.+ |+    ++.-|.+=|+.|...|+|.+... .
T Consensus         7 c~i~~al~iig~kW~~~Il~---------~L~~-g--~~RF~el~~~l~gI----S~~~Ls~rLk~L~~~glv~R~~~-~   69 (108)
T d1z7ua1           7 TSINLALSTINGKWKLSLMD---------ELFQ-G--TKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESF-N   69 (108)
T ss_dssp             HHHHHHHHTTCSTTHHHHHH---------HHHH-S--CBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEE-C
T ss_pred             CcHHHHHHHHcCCCHHHHHH---------HHHc-C--CCCHHHHHHHCcCC----ChhHHHHHHHHHHHCCcceeecc-C
Confidence            34555555666666655444         3444 4  88999999998 79    99999999999999999987521 1


Q ss_pred             CCCccccceecchhcccccC
Q 046424           98 KDGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        98 ~~~~~~~~y~~t~~s~~l~~  117 (266)
                       .....-.|.+|+.|..|.+
T Consensus        70 -~~p~~veY~LT~~G~~L~p   88 (108)
T d1z7ua1          70 -ELPPRVEYTLTPEGYALYD   88 (108)
T ss_dssp             -CSSCEEEEEECHHHHHHHH
T ss_pred             -CCcceehhhhchhHHHHHH
Confidence             0000123999999886664

>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal domain of RPA32
domain: C-terminal domain of RPA32
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.74  E-value=0.16  Score=32.35  Aligned_cols=57  Identities=12%  Similarity=0.216  Sum_probs=44.5

Q ss_pred             hChhHHHhhcCC-CCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecch
Q 046424           43 LGLLEIMAKASP-TQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTP  110 (266)
Q Consensus        43 lglfd~L~~~g~-~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~  110 (266)
                      ..||.+|..... .++++.+|++++ ++    +...+...++.|...|++-.+-    |   +++|+.|.
T Consensus         9 ~~V~~~i~s~~~~eGi~~~el~~~l~~~----~~~~i~~aid~L~~eG~IYsTi----D---ddHfkstd   67 (69)
T d1dpua_           9 NQVLNLIKACPRPEGLNFQDLKNQLKHM----SVSSIKQAVDFLSNEGHIYSTV----D---DDHFKSTD   67 (69)
T ss_dssp             HHHHHHHHHCCCTTTEEHHHHHHHSTTS----CHHHHHHHHHHHHHTTSEEECS----S---TTEEEESS
T ss_pred             HHHHHHHHhCCCccCcCHHHHHHHccCC----CHHHHHHHHHHHHhCCceeccc----c---cchhcccC
Confidence            345666654322 379999999998 79    9999999999999999998762    2   78888764

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=90.72  E-value=0.17  Score=40.62  Aligned_cols=41  Identities=12%  Similarity=-0.058  Sum_probs=30.5

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDL  233 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dl  233 (266)
                      +.+.+- +....+|||+|||.|.++.-+++..+..++..+++
T Consensus        58 ~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          58 FVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             HHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            334443 56667899999999999999998877666555544

>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.13  E-value=0.096  Score=33.67  Aligned_cols=60  Identities=10%  Similarity=0.042  Sum_probs=48.8

Q ss_pred             HhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCc-chHHHHHHHHhcCCccccccccCCCCccccceecchhc
Q 046424           41 TELGLLEIMAKASPTQLSSSEIASQLPTNNKKAP-IILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVS  112 (266)
Q Consensus        41 ~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~-~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s  112 (266)
                      .+-.|.+.|.+.|  +.++-+||+.+|+    .. .-+.+.|.-|...|.|.....      ....|.++.-.
T Consensus         6 ~eekI~~~L~~~g--~~~Al~iak~lGl----~kakeVN~~LY~L~k~g~v~k~~~------tPP~W~L~~~~   66 (73)
T d1xmka1           6 IKEKICDYLFNVS--DSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQGT------TPPIWHLTDKK   66 (73)
T ss_dssp             HHHHHHHHHHHTC--CEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEECS------SSCEEEECHHH
T ss_pred             HHHHHHHHHHHcC--CchHHHHHHHhCC----CcHHHHhHHHHHHHHCCCeecCCC------CCCceeeecch
Confidence            4567889998887  8999999999999    66 459999999999999997621      15678888643

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.77  E-value=0.43  Score=39.49  Aligned_cols=54  Identities=13%  Similarity=0.132  Sum_probs=40.7

Q ss_pred             CCceEEEecCCccHHHHHHHHH-CCCCeEEEeechH-HHhhC---CCCCCceEEeccCCC
Q 046424          201 GLNQLVDVAGGLGANLKSIVSK-YPQLRGINFDLPH-VLKHA---PSCPGVEHVGGDMFV  255 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~~~-~P~l~~~v~Dlp~-vi~~a---~~~~ri~~~~gD~f~  255 (266)
                      ...+|++||.|.|.+...|+++ .|. +.+++|.-+ -++..   ...++++++.+|++.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~-~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPR-QYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCS-EEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCC-EEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            4578999999999999999987 443 788888743 22222   224789999999985

>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: AraC type transcriptional activator
domain: MarA
species: Escherichia coli [TaxId: 562]

Probab=89.66  E-value=0.16  Score=30.28  Aligned_cols=43  Identities=16%  Similarity=0.186  Sum_probs=33.9

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLT   91 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~   91 (266)
                      +.+.|.++-..++|+++||+.+|+    +++.+.|+.+-.....+.+
T Consensus         8 v~~yI~~~~~~~~tl~~lA~~~~~----s~~~l~r~Fk~~~g~tp~~   50 (54)
T d1bl0a1           8 ILDWIEDNLESPLSLEKVSERSGY----SKWHLQRMFKKETGHSLGQ   50 (54)
T ss_dssp             HHHHHHTTTTSCCCCHHHHHHSSS----CHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHhccCCCCCHHHHHHHHCc----CHHHHHHHHHHHHCcCHHH
Confidence            455666654349999999999999    9999999998877665443

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=89.58  E-value=0.088  Score=43.88  Aligned_cols=66  Identities=11%  Similarity=-0.020  Sum_probs=47.7

Q ss_pred             CCCCceEEEecCCccHHHHHHHHHCCCCeEEEeech-HHHhhCCC--------CCCceEEeccCCCCC------CCC-CE
Q 046424          199 FEGLNQLVDVAGGLGANLKSIVSKYPQLRGINFDLP-HVLKHAPS--------CPGVEHVGGDMFVEV------PKG-QA  262 (266)
Q Consensus       199 ~~~~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~a~~--------~~ri~~~~gD~f~~~------P~~-D~  262 (266)
                      +....+|+|+.||+|.++..++.... -+++.+|+. ..++.++.        ..+++++.+|.|+.+      ... |+
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~  220 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  220 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence            34568999999999999988776533 358889994 45555443        157999999998732      223 88


Q ss_pred             EEe
Q 046424          263 IFM  265 (266)
Q Consensus       263 ~~l  265 (266)
                      |++
T Consensus       221 Ii~  223 (317)
T d2b78a2         221 III  223 (317)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtfH
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.36  E-value=0.07  Score=37.64  Aligned_cols=80  Identities=13%  Similarity=0.101  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhC-CCCCCCCcchHHHHHHHHhcCCccccccccCC
Q 046424           20 DFLLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQL-PTNNKKAPIILDRMLRLLASYSFLTCNLVSNK   98 (266)
Q Consensus        20 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~-~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~   98 (266)
                      +...+++++.+-|....|..         |.. |  +....||.+.+ |+    +++-|.+=|+-|...|+|++... . 
T Consensus        13 pv~~~l~~ig~kW~l~Il~~---------L~~-g--~~RF~el~~~l~gi----s~~~Ls~rL~~Le~~glv~R~~~-~-   74 (114)
T d1yyva1          13 PSREVLKHVTSRWGVLILVA---------LRD-G--THRFSDLRRKMGGV----SEKMLAQSLQALEQDGFLNRVSY-P-   74 (114)
T ss_dssp             THHHHHHHHHSHHHHHHHHH---------GGG-C--CEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEE-C-
T ss_pred             CHHHHHHHHcCCCHHHHHHH---------Hhc-C--CCCHHHHHHHcccc----chhHHHHHHHHHHHHHHHhhccc-C-
Confidence            46677777777776665543         333 4  88999999999 79    99999999999999999997621 1 


Q ss_pred             CCccccceecchhcccccC
Q 046424           99 DGSVQRLYGLTPVSKYFVP  117 (266)
Q Consensus        99 ~~~~~~~y~~t~~s~~l~~  117 (266)
                      .....-.|.+|+.|..|.+
T Consensus        75 ~~p~~veY~LT~~G~~L~~   93 (114)
T d1yyva1          75 VVPPHVEYSLTPLGEQVSD   93 (114)
T ss_dssp             SSSCEEEEEECHHHHHHHH
T ss_pred             CCCchhHhHhhHhHHHHHH
Confidence            0100234999999887663

>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PA1607
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.08  E-value=0.15  Score=37.32  Aligned_cols=77  Identities=17%  Similarity=0.188  Sum_probs=54.7

Q ss_pred             HHHHHHHhhhhHHHHHHHHHhhChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCc
Q 046424           22 LLAMELASGAVLPMTIKSATELGLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGS  101 (266)
Q Consensus        22 ~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~  101 (266)
                      ...++++..-|....|+.+         .. |  +..+.||.+.+|+    ++..|..=|+.|...|+|++..  . +..
T Consensus        11 ~~~l~ilg~kW~l~Il~~l---------~~-G--~~rf~el~~~lgi----s~~vLs~rL~~L~~~gLv~r~~--~-~~p   71 (142)
T d2f2ea1          11 ARPLDVIGDGWSMLIVRDA---------FE-G--LTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVP--A-ESG   71 (142)
T ss_dssp             TTTHHHHCSSSHHHHHHHH---------HT-T--CCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEE--C-SSS
T ss_pred             HHHHHHHcCCCHHHHHHHH---------Hc-C--CCCHHHHHHHhhc----cHHHHHHHHHHHHHhcceeeec--C-CCC
Confidence            3445555556666555543         23 4  8999999999999    9999999999999999998631  1 110


Q ss_pred             cccceecchhcccccC
Q 046424          102 VQRLYGLTPVSKYFVP  117 (266)
Q Consensus       102 ~~~~y~~t~~s~~l~~  117 (266)
                      ..-.|++|+.|..|.+
T Consensus        72 ~r~~Y~LT~~G~~L~p   87 (142)
T d2f2ea1          72 SHQEYRLTDKGRALFP   87 (142)
T ss_dssp             SCEEEEECHHHHTTHH
T ss_pred             CeeEEecCcCcchHHH
Confidence            1345999998886653

>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Probable transcription regulator BT4300, C-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=88.80  E-value=0.15  Score=32.67  Aligned_cols=43  Identities=9%  Similarity=0.188  Sum_probs=37.2

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchh
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPV  111 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~  111 (266)
                      ++|-+|||+.+|+    +...+.|.|..|...|+++..         .+.+.....
T Consensus        27 ~lt~~elA~~lg~----sr~tvsr~l~~l~~~g~I~~~---------~~~i~I~d~   69 (73)
T d1zyba1          27 KVKMDDLARCLDD----TRLNISKTLNELQDNGLIELH---------RKEILIPDA   69 (73)
T ss_dssp             ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSCEEE---------TTEEEESCG
T ss_pred             ecCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec---------CCEEEEccH
Confidence            6899999999999    999999999999999999975         466666543

>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator DR1159
species: Deinococcus radiodurans [TaxId: 1299]

Probab=88.69  E-value=0.063  Score=40.52  Aligned_cols=68  Identities=16%  Similarity=0.209  Sum_probs=46.0

Q ss_pred             hChhHHHhhcCC-CCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccccccCCCCccccceecchhccccc
Q 046424           43 LGLLEIMAKASP-TQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNLVSNKDGSVQRLYGLTPVSKYFV  116 (266)
Q Consensus        43 lglfd~L~~~g~-~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~~~~~~~y~~t~~s~~l~  116 (266)
                      +.|+-.|...|+ .++|..+||+.+++    +...+.+++.-|...|+|+... +..|++ .-..++|+.|..+.
T Consensus        65 ~~vL~~L~~~~~~~~lt~~eLa~~l~i----~~~tvsr~l~~Le~~GlV~r~~-~~~DrR-~~~i~LT~~G~~l~  133 (172)
T d2fbka1          65 WDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERRE-DERDRR-SASIRLTPQGRALV  133 (172)
T ss_dssp             HHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC---------CCBEECHHHHHHH
T ss_pred             HHHHHHHHhhCCCCCcCHHHHHHHHCc----CHhHHHHHHHHHHhCCCeeeec-cccchh-hHHhhcCHHHHHHH
Confidence            345555655442 25899999999999    9999999999999999999873 111221 22366777665444

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=87.87  E-value=0.17  Score=38.44  Aligned_cols=63  Identities=13%  Similarity=0.139  Sum_probs=43.4

Q ss_pred             CceEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhhCCC--------CCCceEEeccCCC---C-CCC--CCEEEe
Q 046424          202 LNQLVDVAGGLGANLKSIVSKYPQLRGINFDLPH-VLKHAPS--------CPGVEHVGGDMFV---E-VPK--GQAIFM  265 (266)
Q Consensus       202 ~~~vvDVGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~a~~--------~~ri~~~~gD~f~---~-~P~--~D~~~l  265 (266)
                      ..+|||+-+|+|.++.+.+.+-.. +++.+|... .+..++.        ....++...|.++   . ...  -|++++
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             cceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            368999999999999999999866 788888853 4433332        1346666666443   1 112  299886

>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: RPO3F domain-like
domain: DNA-directed RNA polymerase III subunit RPC6, RPO3F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.88  E-value=0.27  Score=31.98  Aligned_cols=45  Identities=13%  Similarity=0.220  Sum_probs=41.7

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      |++++.++|+.++...+|..++++    +...+.+.|..|.+.+++.+.
T Consensus        18 VY~~I~~ag~~GIW~~dir~ktnL----~~~~l~K~LK~Lesk~lIK~V   62 (78)
T d2dk5a1          18 VYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV   62 (78)
T ss_dssp             HHHHHHHHCTTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHccccceeHHHHHHHcCC----CHHHHHHHHHHHHhcCCceee
Confidence            678888888779999999999999    999999999999999999976

>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcription factor E/IIe-alpha, N-terminal domain
domain: Transcription factor E/IIe-alpha, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.50  E-value=0.22  Score=33.09  Aligned_cols=46  Identities=26%  Similarity=0.370  Sum_probs=38.6

Q ss_pred             ChhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCcccccc
Q 046424           44 GLLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCNL   94 (266)
Q Consensus        44 glfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~~   94 (266)
                      .|++.|.+.+ +.+|=++||+.+|+    ....++++|..|...|++...+
T Consensus        22 ~v~~~L~~~~-~evtDe~iA~~tgi----~in~VRk~Ly~L~~~~L~~y~R   67 (88)
T d1q1ha_          22 DVLRILLDKG-TEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYRK   67 (88)
T ss_dssp             HHHHHHHHHC-SCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHhcc-CcCCHHHHHHHhCC----cHHHHHHHHHHHHhCCceEEEE
Confidence            3777775432 27999999999999    9999999999999999998654

>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Transcriptional regulator PG0396, C-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=86.03  E-value=0.37  Score=31.05  Aligned_cols=34  Identities=24%  Similarity=0.136  Sum_probs=32.5

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ++|-+|||..+|+    +...+.|+|.-|...|+++..
T Consensus        29 ~lt~~eLA~~~G~----sretvsr~L~~l~~~glI~~~   62 (81)
T d2gaua1          29 YLSREELATLSNM----TVSNAIRTLSTFVSERMLALD   62 (81)
T ss_dssp             CCCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence            7899999999999    999999999999999999976

>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: 34L
species: Yaba-like disease virus, YLDV [TaxId: 132475]

Probab=85.97  E-value=0.16  Score=32.23  Aligned_cols=43  Identities=7%  Similarity=0.026  Sum_probs=37.2

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ..+.|..+.  ..|+.+||+.+|+    +.+-+.|.|--|...|.|...
T Consensus        15 ~l~~L~~~~--~~tA~~LAk~Lg~----~Kk~VNr~LY~L~~~G~v~~~   57 (70)
T d1sfua_          15 EVLSLNTND--YTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV   57 (70)
T ss_dssp             HHHTSCTTC--EECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHhcCCCC--CchHHHHHHHhCC----CHHHHHHHHHHHHHCCCeecC
Confidence            345565554  8999999999999    899999999999999999986

>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: AraC type transcriptional activator
domain: Rob transcription factor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.99  E-value=0.39  Score=28.45  Aligned_cols=41  Identities=20%  Similarity=0.198  Sum_probs=32.7

Q ss_pred             hhHHHhhcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCc
Q 046424           45 LLEIMAKASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSF   89 (266)
Q Consensus        45 lfd~L~~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~   89 (266)
                      +.+.+.++-.+++|+++||+.+++    ++..+.|+.+......+
T Consensus         8 i~~yi~~~~~~~itl~~lA~~~~~----S~~~l~r~Fk~~~g~tp   48 (54)
T d1d5ya1           8 LLIWLEGHLDQPLSLDNVAAKAGY----SKWHLQRMFKDVTGHAI   48 (54)
T ss_dssp             HHHHHHTTSSSSCCCHHHHTTTSS----CHHHHHHHHHHHHSSCH
T ss_pred             HHHHHHHccCCCCCHHHHHHHHCc----CHHHHHHHHHHHHCcCH
Confidence            556666653349999999999999    99999999987765544

>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: LexA repressor, N-terminal DNA-binding domain
domain: LexA repressor, N-terminal DNA-binding domain
species: Escherichia coli [TaxId: 562]

Probab=84.01  E-value=0.66  Score=29.32  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=33.2

Q ss_pred             hcCCCCCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           51 KASPTQLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        51 ~~g~~~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ++| -|-|..|||+.+|+.   ++..+.+.|..|...|+++..
T Consensus        20 ~~G-~~Ps~rei~~~~g~~---S~stv~~~l~~Le~kG~I~r~   58 (71)
T d1jhfa1          20 QTG-MPPTRAEIAQRLGFR---SPNAAEEHLKALARKGVIEIV   58 (71)
T ss_dssp             HHS-SCCCHHHHHHHTTCS---SHHHHHHHHHHHHHTTSEEEC
T ss_pred             HhC-CCCCHHHHHHHcCCC---CHHHHHHHHHHHHHCcCeecC
Confidence            344 388999999999982   466799999999999999986

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=83.37  E-value=0.75  Score=36.16  Aligned_cols=55  Identities=13%  Similarity=-0.015  Sum_probs=39.1

Q ss_pred             CCceEEEecCCccHHHHHHH----HHCCCCeEEEeechH-HHhhC-CCCCCceEEeccCCC
Q 046424          201 GLNQLVDVAGGLGANLKSIV----SKYPQLRGINFDLPH-VLKHA-PSCPGVEHVGGDMFV  255 (266)
Q Consensus       201 ~~~~vvDVGGG~G~~~~~l~----~~~P~l~~~v~Dlp~-vi~~a-~~~~ri~~~~gD~f~  255 (266)
                      ++++||.||.+.|..+.-++    ...++.+.+.+|+.. ..... ...+||+++.||...
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~  140 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSD  140 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeeccccc
Confidence            57999999999998655433    345788999999843 22211 123899999999765

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.15  E-value=1.6  Score=32.90  Aligned_cols=40  Identities=18%  Similarity=0.219  Sum_probs=26.8

Q ss_pred             CCceEEEecCCccH----HHHHHHHHC----CCCeEEEeech-HHHhhC
Q 046424          201 GLNQLVDVAGGLGA----NLKSIVSKY----PQLRGINFDLP-HVLKHA  240 (266)
Q Consensus       201 ~~~~vvDVGGG~G~----~~~~l~~~~----P~l~~~v~Dlp-~vi~~a  240 (266)
                      +.-+|.++|||+|.    +++.+.+..    ++++.+..|+. ..++.|
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A   72 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKA   72 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHH
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHh
Confidence            56799999999999    344445442    24567888884 355544

>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=82.08  E-value=0.44  Score=30.69  Aligned_cols=34  Identities=21%  Similarity=0.213  Sum_probs=31.8

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ++|-+|||..+|+    +...+.|+|.-|...|+++..
T Consensus        30 ~lt~~elA~~~g~----sretvsr~l~~l~~~glI~~~   63 (80)
T d3e5ua1          30 PLSQKSIGEITGV----HHVTVSRVLASLKRENILDKK   63 (80)
T ss_dssp             CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred             CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence            7899999999999    999999999999999999875

>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Catabolite gene activator protein (CAP), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.02  E-value=0.43  Score=29.88  Aligned_cols=34  Identities=15%  Similarity=0.384  Sum_probs=32.3

Q ss_pred             CCCHHHHHhhCCCCCCCCcchHHHHHHHHhcCCccccc
Q 046424           56 QLSSSEIASQLPTNNKKAPIILDRMLRLLASYSFLTCN   93 (266)
Q Consensus        56 ~~t~~elA~~~~~~~~~~~~~l~rlLr~L~~~g~l~~~   93 (266)
                      ++|-+|||..+|+    +..-+.|+|.-|...|+++..
T Consensus        29 ~lt~~~lA~~~G~----sRetvsr~L~~l~~~glI~~~   62 (69)
T d1i5za1          29 KITRQEIGQIVGC----SRETVGRILKMLEDQNLISAH   62 (69)
T ss_dssp             ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEc
Confidence            6999999999999    999999999999999999975

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=80.43  E-value=0.79  Score=39.19  Aligned_cols=73  Identities=16%  Similarity=0.077  Sum_probs=48.2

Q ss_pred             HHHHccCCCCCceEEEecCCccHHHHHHHHHCCC-------------CeEEEeechH-HHhhCCC--------CCCceEE
Q 046424          192 ILEIYKGFEGLNQLVDVAGGLGANLKSIVSKYPQ-------------LRGINFDLPH-VLKHAPS--------CPGVEHV  249 (266)
Q Consensus       192 i~~~~~~~~~~~~vvDVGGG~G~~~~~l~~~~P~-------------l~~~v~Dlp~-vi~~a~~--------~~ri~~~  249 (266)
                      +++.++ -....+|+|-.||+|.++.++.++..+             ....++|.-. ....++.        .+.+...
T Consensus       154 mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~  232 (425)
T d2okca1         154 MVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIV  232 (425)
T ss_dssp             HHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEE
T ss_pred             hheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceee
Confidence            344443 334689999999999999988775432             3467888754 3333221        2456788


Q ss_pred             eccCCCCCCCC--CEEEe
Q 046424          250 GGDMFVEVPKG--QAIFM  265 (266)
Q Consensus       250 ~gD~f~~~P~~--D~~~l  265 (266)
                      .+|+++..+..  |+++.
T Consensus       233 ~~d~l~~~~~~~fD~Ii~  250 (425)
T d2okca1         233 CEDSLEKEPSTLVDVILA  250 (425)
T ss_dssp             ECCTTTSCCSSCEEEEEE
T ss_pred             cCchhhhhcccccceEEe
Confidence            89999865543  88874