Citrus Sinensis ID: 046437

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MPDQQQGDKDQDPNGQDRNGKNPNGQGPKGKRPIDHTRDASPPVRNRMNAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFFTPRER
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEccccccccHHHHccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccEEccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEccccccccccHHHccccccEEEEEccccc
Coil and Loop (DISEMBL)
mpdqqqgdkdqdpngqdrngknpngqgpkgkrpidhtrdasppvrnrmnaakgpefddnfppgyrfkphdIELLVHYLRRKrmneplppnrikevhlykfnpdtlsekykpfgenewyfftprer
Flexible Loop (DISEMBL)
mpdqqqgdkdqdpngqdrngknpngqgpkgkrpidhtrdasppVRNRMNAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMneplppnrikevhLYKFNPdtlsekykpfgenewyfftprer
Low Complexity Region (SEG)
MpdqqqgdkdqdpngqdrngknpngqgpkgkrpIDHTRDASPPVRNRMNAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFFTPRER
Disordered region (IsUnstruct)
**************************************************************GYRFKPHDIELLVHYLRRKRM******NRIKEVHLYKFNPDTLSEKYKPFGENEWYFFT****
Disordered Region (DISOPRED)
*************************************************************PGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFFTPRER
Disordered Region (DISEMBL)
***************QDRNGKNPNGQGPKGKRPIDHTRDASPPVRNRMNAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFFTPRER
Disordered Region (DISPRO)
*************************QGPKGK***************************NFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFFTPR**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPDQQQGDKDQDPNGQDRNGKNPNGQGPKGKRPIDHTRDASPPVRNRMNAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFFTPRER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
A0SPJ6	396	NAC transcription factor	N/A	no	0.52	0.164	0.590	8e-16
A0SPJ3	405	NAC transcription factor	N/A	no	0.608	0.187	0.547	9e-16
O49255	268	NAC transcription factor	yes	no	0.536	0.25	0.573	2e-15
Q52QH4	318	NAC domain-containing pro	yes	no	0.616	0.242	0.535	3e-15
A0SPJ8	406	NAC transcription factor	N/A	no	0.52	0.160	0.590	3e-15
A2YMR0	425	NAC transcription factor	N/A	no	0.688	0.202	0.478	4e-15
D2SMN4	406	NAC transcription factor	N/A	no	0.52	0.160	0.590	5e-15
Q8H4S4	425	NAC transcription factor	no	no	0.688	0.202	0.478	5e-15
A0SPJ9	402	NAC transcription factor	N/A	no	0.52	0.161	0.590	1e-14
Q8GY42	323	NAC transcription factor	no	no	0.528	0.204	0.552	1e-14

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 60  FPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYF 119
            PPG+RF P D EL+VHYL++K    PLP   I EV LYKF+P  L EK   FGE EWYF
Sbjct: 28  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIITEVDLYKFDPWELPEK-ATFGEQEWYF 86

Query: 120 FTPRER 125
           F+PR+R
Sbjct: 87  FSPRDR 92

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.
Triticum durum (taxid: 4567)

>sp|A0SPJ3|NAMA1_TRIDB NAC transcription factor NAM-A1 OS=Triticum durum GN=NAM-A1 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 54/84 (64%), Gaps = 8/84 (9%)

Query: 42  PPVRNRMNAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFN 101
           PP R R +A   PE     PPG+RF P D EL+VHYL++K    PLP   I EV LYKF+
Sbjct: 22  PPPRQRGSA---PEL----PPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFD 74

Query: 102 PDTLSEKYKPFGENEWYFFTPRER 125
           P  L EK   FGE EWYFF+PR+R
Sbjct: 75  PWELPEK-ATFGEQEWYFFSPRDR 97

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321).

Triticum durum (taxid: 4567)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 58  DNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEW 117
              PPG+RF P D EL+V+YLR + M++P P + I EV +YKF+P  L EK + FGENEW
Sbjct: 7   STLPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTE-FGENEW 65

Query: 118 YFFTPRER 125
           YFF+PRER
Sbjct: 66  YFFSPRER 73

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 51/84 (60%), Gaps = 7/84 (8%)

Query: 48  MNAAKG------PEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFN 101
           M AA G       E + N PPG+RF P D EL+VHYL RK   +PLP   I EV LYK +
Sbjct: 3   MAAAVGGSGRRDAEAELNLPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLD 62

Query: 102 PDTLSEKYKPFGENEWYFFTPRER 125
           P  L EK   FG  EWYFFTPR+R
Sbjct: 63  PWDLPEK-ALFGRKEWYFFTPRDR 85

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/66 (59%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 60  FPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYF 119
            PPG+RF P D EL+VHYL++K    PLP   I EV LYKF+P  L EK   FGE+EWYF
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEK-ATFGEHEWYF 93

Query: 120 FTPRER 125
           F+PR+R
Sbjct: 94  FSPRDR 99

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/94 (47%), Positives = 57/94 (60%), Gaps = 8/94 (8%)

Query: 35  DHTRDASPPV---RNRMNAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNR 91
           D +  ++PP    R +      PE     PPG+RF P D EL+VHYL++K  + PLP   
Sbjct: 5   DSSSGSAPPRVLRRQQQQPGSAPEL----PPGFRFHPTDEELVVHYLKKKAASVPLPVTI 60

Query: 92  IKEVHLYKFNPDTLSEKYKPFGENEWYFFTPRER 125
           I EV LYKF+P  L EK   FGE EWYFF+PR+R
Sbjct: 61  IAEVDLYKFDPWELPEKAN-FGEQEWYFFSPRDR 93

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/66 (59%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 60  FPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYF 119
            PPG+RF P D EL+VHYL++K    PLP   I EV LYKF+P  L EK   FGE+EWYF
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEK-ATFGEHEWYF 93

Query: 120 FTPRER 125
           F+PR+R
Sbjct: 94  FSPRDR 99

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare subsp. spontaneum (taxid: 77009)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 45/94 (47%), Positives = 57/94 (60%), Gaps = 8/94 (8%)

Query: 35  DHTRDASPPV---RNRMNAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNR 91
           D +  ++PP    R +      PE     PPG+RF P D EL+VHYL++K  + PLP   
Sbjct: 5   DSSSGSAPPRVLRRQQQQPGSAPEL----PPGFRFHPTDEELVVHYLKKKAASVPLPVTI 60

Query: 92  IKEVHLYKFNPDTLSEKYKPFGENEWYFFTPRER 125
           I EV LYKF+P  L EK   FGE EWYFF+PR+R
Sbjct: 61  IAEVDLYKFDPWDLPEKAN-FGEQEWYFFSPRDR 93

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/66 (59%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 60  FPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYF 119
            PPG+RF P D EL+VHYL++K    PLP   I EV LYKF+P  L EK   FGE EWYF
Sbjct: 28  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEK-ATFGEQEWYF 86

Query: 120 FTPRER 125
           F+PR+R
Sbjct: 87  FSPRDR 92

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 49/67 (73%), Gaps = 1/67 (1%)

Query: 59  NFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWY 118
           + PPG+RF P D EL+VHYL++K  + PLP + I E+ LYKF+P  L  K   FGE+EWY
Sbjct: 15  HLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSK-ASFGEHEWY 73

Query: 119 FFTPRER 125
           FF+PR+R
Sbjct: 74  FFSPRDR 80

Transcription factor of the NAC family. May be associated with anther development and pollen production.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
255544902	522	conserved hypothetical protein [Ricinus	0.568	0.136	0.619	1e-19
224143770	432	NAC domain protein, IPR003441 [Populus t	0.544	0.157	0.632	4e-18
224106189	513	NAC domain protein, IPR003441 [Populus t	0.76	0.185	0.479	7e-17
297746301	364	unnamed protein product [Vitis vinifera]	0.616	0.211	0.518	1e-16
224139870	645	NAC domain protein, IPR003441 [Populus t	0.528	0.102	0.590	1e-16
224106187	386	NAC domain protein, IPR003441 [Populus t	0.568	0.183	0.549	2e-16
225435399	406	PREDICTED: uncharacterized protein LOC10	0.56	0.172	0.549	3e-16
255553053	320	transcription factor, putative [Ricinus	0.68	0.265	0.5	5e-16
147789356	330	hypothetical protein VITISV_034302 [Viti	0.544	0.206	0.544	5e-16
147856877	308	hypothetical protein VITISV_036442 [Viti	0.616	0.25	0.493	9e-16

>gi|255544902|ref|XP_002513512.1| conserved hypothetical protein [Ricinus communis] gi|223547420|gb|EEF48915.1| conserved hypothetical protein [Ricinus communis]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 55/71 (77%)

Query: 55  EFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGE 114
           EF D+FP GYRF P D EL++HYLRRK  ++ LPPN+I  + LY FNP+ L+EKY  +GE
Sbjct: 102 EFFDSFPAGYRFCPSDEELIIHYLRRKVHDQILPPNKIISLDLYNFNPEFLAEKYANYGE 161

Query: 115 NEWYFFTPRER 125
           NEWYFFTPR +
Sbjct: 162 NEWYFFTPRAK 172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143770|ref|XP_002325069.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222866503|gb|EEF03634.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 51/68 (75%)

Query: 58  DNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEW 117
           D +PPGYRFKP D EL+  YL  K  N PLP N I EV LYK+NP+TL+E Y+P+GE EW
Sbjct: 37  DQYPPGYRFKPKDQELISCYLLCKIRNRPLPRNGIHEVTLYKYNPETLAENYEPYGEKEW 96

Query: 118 YFFTPRER 125
           YF TPR+R
Sbjct: 97  YFLTPRDR 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106189|ref|XP_002314078.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222850486|gb|EEE88033.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 1/96 (1%)

Query: 31  KRPIDHTRDASPPVRNRM-NAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPP 89
           + P   T  A+ P R R  N      + ++FPPGYRF PHD EL++HYL  K    PLP 
Sbjct: 78  QSPSTFTLAAAAPPRPRFANDRDDDHYFNSFPPGYRFCPHDHELVIHYLTNKVKGLPLPR 137

Query: 90  NRIKEVHLYKFNPDTLSEKYKPFGENEWYFFTPRER 125
           N+I +V LY+++P+ L+++Y+ FGE EWYFFTPR+R
Sbjct: 138 NKIVDVILYQYDPEYLADRYQKFGEKEWYFFTPRDR 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746301|emb|CBI16357.3| unnamed protein product [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 60/79 (75%), Gaps = 2/79 (2%)

Query: 49  NAAKGPEFDD--NFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLS 106
           +++KG E  D  + PPGYRF P D E++V YLR+K  ++ LPPN+I EV+LY ++PD L+
Sbjct: 25  SSSKGGELFDLNSLPPGYRFNPTDAEIIVFYLRKKIDHQSLPPNKIIEVNLYGYDPDELA 84

Query: 107 EKYKPFGENEWYFFTPRER 125
            +Y+P G +EW++FTPRER
Sbjct: 85  ARYEPSGNDEWFYFTPRER 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139870|ref|XP_002323317.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222867947|gb|EEF05078.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 50/66 (75%)

Query: 60  FPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYF 119
           F PG RF PHD EL+V YL +K  NEPLP NRI EV++Y+++P TL+EKYK + E+ WYF
Sbjct: 100 FAPGIRFFPHDQELVVEYLMKKIRNEPLPKNRIHEVNIYEYHPKTLAEKYKLYSEDAWYF 159

Query: 120 FTPRER 125
           FT R +
Sbjct: 160 FTTRSK 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106187|ref|XP_002314077.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222850485|gb|EEE88032.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 54/71 (76%)

Query: 55  EFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGE 114
            + +NFP GYRF PH+ EL++HYL+ K    PLP NRI +V LY+ NP+ L+E++K +GE
Sbjct: 78  SYFNNFPAGYRFCPHNHELVLHYLKNKVSGLPLPRNRIADVSLYQHNPEELAEQFKHYGE 137

Query: 115 NEWYFFTPRER 125
            EWYFFTPR++
Sbjct: 138 REWYFFTPRDK 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435399|ref|XP_002282639.1| PREDICTED: uncharacterized protein LOC100250078 [Vitis vinifera]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 56  FDDN-FPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGE 114
           FD N  PPGYRF P D E +V+YLR+K  ++PLPPN+I EV+LY ++P+ L+ +Y+P G 
Sbjct: 34  FDLNSLPPGYRFNPTDAETIVYYLRKKVDHQPLPPNKIIEVNLYAYDPEELAARYEPCGN 93

Query: 115 NEWYFFTPRER 125
           +EW++FTPR+R
Sbjct: 94  DEWFYFTPRDR 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553053|ref|XP_002517569.1| transcription factor, putative [Ricinus communis] gi|223543201|gb|EEF44733.1| transcription factor, putative [Ricinus communis]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 5/90 (5%)

Query: 39  DASPPVRNRMNAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLY 98
           D  P V N  N  +  E+    PPGY+FKP D EL+VHYL+RK +N+ LPP+RI E+ +Y
Sbjct: 45  DIVPAVDN--NNREEGEYLKILPPGYKFKPSDGELIVHYLQRKILNQTLPPHRINELEMY 102

Query: 99  KFNPDTLSEKYKPFGEN---EWYFFTPRER 125
           KFNP+TL+  Y   G     EWYFF+PR++
Sbjct: 103 KFNPETLAADYASSGNGGREEWYFFSPRDQ 132

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789356|emb|CAN73322.1| hypothetical protein VITISV_034302 [Vitis vinifera]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 54/68 (79%)

Query: 58  DNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEW 117
           ++ PPGYRF P D E++V YLR+K  ++ LPPN+I EV+LY ++PD L+ +Y+P G +EW
Sbjct: 35  NSLPPGYRFYPTDAEIIVFYLRKKIDHQSLPPNKIIEVNLYAYDPDELAARYEPSGNDEW 94

Query: 118 YFFTPRER 125
           ++FTPRER
Sbjct: 95  FYFTPRER 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856877|emb|CAN79171.1| hypothetical protein VITISV_036442 [Vitis vinifera]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 59/79 (74%), Gaps = 2/79 (2%)

Query: 49  NAAKGPEFDD--NFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLS 106
           ++++G E  D  + PPGYRF P D E++V YLR+K  ++ LPPN+I EV+LY ++PD L+
Sbjct: 25  SSSQGGELFDLNSLPPGYRFNPTDAEIIVFYLRKKIDHQSLPPNKIIEVNLYGYDPDELA 84

Query: 107 EKYKPFGENEWYFFTPRER 125
            +Y+  G +EW++FTPRER
Sbjct: 85  ARYEXSGNDEWFYFTPRER 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2007166	268	NAP "NAC-like, activated by AP	0.512	0.238	0.6	6.7e-17
TAIR|locus:2090186	364	NAC2 "NAC domain containing pr	0.568	0.195	0.569	2.8e-16
TAIR|locus:2008490	323	NAC025 "NAC domain containing	0.64	0.247	0.487	5.6e-16
TAIR|locus:2011516	320	NAM "NO APICAL MERISTEM" [Arab	0.568	0.221	0.541	9e-16
TAIR|locus:2095908	359	NAC047 "NAC domain containing	0.576	0.200	0.493	9.8e-15
TAIR|locus:2204685	253	NAC032 "NAC domain containing	0.544	0.268	0.478	4.4e-13
TAIR|locus:2090176	317	NAC3 "NAC domain containing pr	0.528	0.208	0.507	3.1e-12
TAIR|locus:2011531	317	NAC019 "NAC domain containing	0.528	0.208	0.507	5.2e-12
TAIR|locus:504956335	283	ATAF2 [Arabidopsis thaliana (t	0.528	0.233	0.507	5.6e-12
TAIR|locus:2198225	289	ATAF1 [Arabidopsis thaliana (t	0.512	0.221	0.476	3e-11

TAIR|locus:2007166 NAP "NAC-like, activated by AP3/PI" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 39/65 (60%), Positives = 50/65 (76%)

Query:    61 PPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFF 120
             PPG+RF P D EL+V+YLR + M++P P + I EV +YKF+P  L EK + FGENEWYFF
Sbjct:    10 PPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTE-FGENEWYFF 68

Query:   121 TPRER 125
             +PRER
Sbjct:    69 SPRER 73

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010150 "leaf senescence" evidence=IMP

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2090186 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 2.8e-16, P = 2.8e-16
 Identities = 41/72 (56%), Positives = 48/72 (66%)

Query:    54 PEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFG 113
             P    N PPG+RF P D EL+VHYL+RK  + PLP   I EV LYKF+P  L  K   FG
Sbjct:    11 PPPQPNLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVDLYKFDPWELPAKAS-FG 69

Query:   114 ENEWYFFTPRER 125
             E EWYFF+PR+R
Sbjct:    70 EQEWYFFSPRDR 81

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2008490 NAC025 "NAC domain containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 5.6e-16, P = 5.6e-16
 Identities = 40/82 (48%), Positives = 56/82 (68%)

Query:    44 VRNRMNAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPD 103
             + N  +++ GP    + PPG+RF P D EL+VHYL++K  + PLP + I E+ LYKF+P 
Sbjct:     1 MENMGDSSIGPGHP-HLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPW 59

Query:   104 TLSEKYKPFGENEWYFFTPRER 125
              L  K   FGE+EWYFF+PR+R
Sbjct:    60 ELPSKAS-FGEHEWYFFSPRDR 80

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2011516 NAM "NO APICAL MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 9.0e-16, P = 9.0e-16
 Identities = 39/72 (54%), Positives = 48/72 (66%)

Query:    54 PEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFG 113
             P    N PPG+RF P D EL++HYL+RK  + PLP   I +V LYKF+P  L  K   FG
Sbjct:    11 PPPQPNLPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYKFDPWELPAKAS-FG 69

Query:   114 ENEWYFFTPRER 125
             E EWYFF+PR+R
Sbjct:    70 EQEWYFFSPRDR 81

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

TAIR|locus:2095908 NAC047 "NAC domain containing protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 9.8e-15, P = 9.8e-15
 Identities = 37/75 (49%), Positives = 51/75 (68%)

Query:    51 AKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYK 110
             +K P    + PPG+RF P D EL++HYLR+K  + P+P + I +V +YK +P  L  K  
Sbjct:     3 SKDPR--SSLPPGFRFHPTDEELILHYLRKKVSSSPVPLSIIADVDIYKSDPWDLPAK-A 59

Query:   111 PFGENEWYFFTPRER 125
             PFGE EWYFF+PR+R
Sbjct:    60 PFGEKEWYFFSPRDR 74

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

TAIR|locus:2204685 NAC032 "NAC domain containing protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 33/69 (47%), Positives = 47/69 (68%)

Query:    57 DDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENE 116
             D  FPPG+RF P D EL++ YL RK  ++P+P   I E+ LY+++P  L +    +GE E
Sbjct:     7 DLQFPPGFRFHPTDEELVLMYLCRKCASQPIPAPIITELDLYRYDPWDLPDMAL-YGEKE 65

Query:   117 WYFFTPRER 125
             WYFF+PR+R
Sbjct:    66 WYFFSPRDR 74

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2090176 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 34/67 (50%), Positives = 41/67 (61%)

Query:    59 NFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWY 118
             + PPG+RF P D EL+V YL RK          I E+ LYKF+P  L  K   FGE EWY
Sbjct:    13 SLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLPSKAL-FGEKEWY 71

Query:   119 FFTPRER 125
             FF+PR+R
Sbjct:    72 FFSPRDR 78

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2011531 NAC019 "NAC domain containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 5.2e-12, P = 5.2e-12
 Identities = 34/67 (50%), Positives = 41/67 (61%)

Query:    59 NFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWY 118
             + PPG+RF P D EL+V YL RK          I E+ LYKF+P  L  K   FGE EWY
Sbjct:    13 SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL-FGEKEWY 71

Query:   119 FFTPRER 125
             FF+PR+R
Sbjct:    72 FFSPRDR 78

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:504956335 ATAF2 [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 5.6e-12, P = 5.6e-12
 Identities = 34/67 (50%), Positives = 42/67 (62%)

Query:    59 NFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWY 118
             N P G+RF P D EL+  YL RK  +E +    I E+ LYKFNP  L E    +GE EWY
Sbjct:     6 NLPAGFRFHPTDEELVKFYLCRKCASEQISAPVIAEIDLYKFNPWELPEM-SLYGEKEWY 64

Query:   119 FFTPRER 125
             FF+PR+R
Sbjct:    65 FFSPRDR 71

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0008361 "regulation of cell size" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009620 "response to fungus" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0043424 "protein histidine kinase binding" evidence=IPI

TAIR|locus:2198225 ATAF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 31/65 (47%), Positives = 43/65 (66%)

Query:    61 PPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFF 120
             PPG+RF P D EL++HYL RK  ++ +    I E+ LYK++P  L      +GE EWYFF
Sbjct:     8 PPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKYDPWELPG-LALYGEKEWYFF 66

Query:   121 TPRER 125
             +PR+R
Sbjct:    67 SPRDR 71

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC090 NAC domain protein, IPR003441 (155 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	6e-21

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score = 81.1 bits (201), Expect = 6e-21
 Identities = 34/67 (50%), Positives = 46/67 (68%), Gaps = 1/67 (1%)

Query: 60  FPPGYRFKPHDIELLVHYLRRKRMNEPLP-PNRIKEVHLYKFNPDTLSEKYKPFGENEWY 118
            PPG+RF P D EL+V+YL+RK + +PLP  + I EV +YKF P  L +     G+ EWY
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 119 FFTPRER 125
           FF+PR+R
Sbjct: 61  FFSPRDR 67

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	99.92

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=99.92  E-value=1.9e-26  Score=166.71  Aligned_cols=65  Identities=49%  Similarity=1.001  Sum_probs=47.4

Q ss_pred             CCCCCeeCCChHHHHHHHhhhhhcCCCCCC-CcceeecCCCCCCCccccccCCCCCccEEEecccCC
Q 046437           60 FPPGYRFKPHDIELLVHYLRRKRMNEPLPP-NRIKEVHLYKFNPDTLSEKYKPFGENEWYFFTPRER  125 (125)
Q Consensus        60 LPpGFRF~PTDEELV~~YLr~Ki~G~plp~-~~I~evDVY~~ePWdLp~~~~~~gd~eWYFFspR~R  125 (125)
                      |||||||+|||+|||.+||++|+.|.+++. .+|.++|||+++||+|+.. ...++.+|||||++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~-~~~~~~~~yFF~~~~~   66 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAK-FKGGDEEWYFFSPRKK   66 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHH-SSS-SSEEEEEEE---
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhh-ccCCCceEEEEEeccc
Confidence            799999999999999999999999999887 7999999999999999954 3346779999999863

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		7e-14
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		2e-12
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		2e-12

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 48  MNAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSE 107
           M   +  E + N PPG+RF P D EL+ HYL RK   + LP   I EV LYKF+P  L E
Sbjct: 3   MRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPE 62
Query: 108 KYKPFGENEWYFFTPRER 125
           +   FG  EWYFFTPR+R
Sbjct: 63  R-ALFGAREWYFFTPRDR 79

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 59  NFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWY 118
           + PPG+RF P D EL+V YL RK          I E+ LYKF+P  L  K   FGE EWY
Sbjct: 19  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK-ALFGEKEWY 77
Query: 119 FFTPRER 125
           FF+PR+R
Sbjct: 78  FFSPRDR 84

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 59  NFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWY 118
           + PPG+RF P D EL+V YL RK          I E+ LYKF+P  L  K   FGE EWY
Sbjct: 16  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK-ALFGEKEWY 74
Query: 119 FFTPRER 125
           FF+PR+R
Sbjct: 75  FFSPRDR 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	5e-26
1ut7_A	171	No apical meristem protein; transcription regulati	2e-25

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score = 94.7 bits (236), Expect = 5e-26
 Identities = 40/78 (51%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 48  MNAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSE 107
           M   +  E + N PPG+RF P D EL+ HYL RK   + LP   I EV LYKF+P  L E
Sbjct: 3   MRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPE 62

Query: 108 KYKPFGENEWYFFTPRER 125
           +   FG  EWYFFTPR+R
Sbjct: 63  RAL-FGAREWYFFTPRDR 79

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score = 93.1 bits (232), Expect = 2e-25
 Identities = 35/74 (47%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 52  KGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKP 111
             P    + PPG+RF P D EL+V YL RK          I E+ LYKF+P  L  K   
Sbjct: 9   TDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL- 67

Query: 112 FGENEWYFFTPRER 125
           FGE EWYFF+PR+R
Sbjct: 68  FGEKEWYFFSPRDR 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	99.96
1ut7_A	171	No apical meristem protein; transcription regulati	99.95

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=99.96  E-value=1.9e-29  Score=194.48  Aligned_cols=70  Identities=56%  Similarity=1.008  Sum_probs=64.6

Q ss_pred             CCCCCCCCCCeeCCChHHHHHHHhhhhhcCCCCCCCcceeecCCCCCCCccccccCCCCCccEEEecccCC
Q 046437           55 EFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFFTPRER  125 (125)
Q Consensus        55 ~~~~~LPpGFRF~PTDEELV~~YLr~Ki~G~plp~~~I~evDVY~~ePWdLp~~~~~~gd~eWYFFspR~R  125 (125)
                      ...+.|||||||+|||||||.|||++|+.|.+++..+|+|+|||++|||+|++. +..++++|||||+|+|
T Consensus        10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~-~~~g~~ewYFFs~r~~   79 (174)
T 3ulx_A           10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPER-ALFGAREWYFFTPRDR   79 (174)
T ss_dssp             CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGG-CSSCSSEEEEEEECCC
T ss_pred             ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhh-hccCCceEEEEecccc
Confidence            457899999999999999999999999999999999999999999999999988 4457889999999875

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=99.95  E-value=2e-29  Score=193.29  Aligned_cols=70  Identities=49%  Similarity=0.901  Sum_probs=64.8

Q ss_pred             CCCCCCCCCCeeCCChHHHHHHHhhhhhcCCCCCCCcceeecCCCCCCCccccccCCCCCccEEEecccCC
Q 046437           55 EFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYFFTPRER  125 (125)
Q Consensus        55 ~~~~~LPpGFRF~PTDEELV~~YLr~Ki~G~plp~~~I~evDVY~~ePWdLp~~~~~~gd~eWYFFspR~R  125 (125)
                      .....|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+|++. +..++++|||||+|+|
T Consensus        12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~-~~~g~~ewyFFs~r~~   81 (171)
T 1ut7_A           12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK-ALFGEKEWYFFSPRDR   81 (171)
T ss_dssp             CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHH-SSSCSSEEEEEEECCC
T ss_pred             ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhch-hhcCCccEEEEecccc
Confidence            347899999999999999999999999999999999999999999999999998 4567899999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	125
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	6e-18

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.7 bits (178), Expect = 6e-18
 Identities = 35/74 (47%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 52  KGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKP 111
             P    + PPG+RF P D EL+V YL RK          I E+ LYKF+P  L  K   
Sbjct: 9   TDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL- 67

Query: 112 FGENEWYFFTPRER 125
           FGE EWYFF+PR+R
Sbjct: 68  FGEKEWYFFSPRDR 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	99.96

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=1.3e-30  Score=194.93  Aligned_cols=81  Identities=43%  Similarity=0.780  Sum_probs=67.6

Q ss_pred             CChhhhhhhhcCCCCCCCCCCCCCCeeCCChHHHHHHHhhhhhcCCCCCCCcceeecCCCCCCCccccccCCCCCccEEE
Q 046437           40 ASPPVRNRMNAAKGPEFDDNFPPGYRFKPHDIELLVHYLRRKRMNEPLPPNRIKEVHLYKFNPDTLSEKYKPFGENEWYF  119 (125)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~LPpGFRF~PTDEELV~~YLr~Ki~G~plp~~~I~evDVY~~ePWdLp~~~~~~gd~eWYF  119 (125)
                      +|+-++.+.+...    ++.|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+|++. ...++++|||
T Consensus         1 ~~~~~~~~~~~~~----~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~-~~~~~~~wyF   75 (166)
T d1ut7a_           1 GSHMGIQETDPLT----QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK-ALFGEKEWYF   75 (166)
T ss_dssp             CCCCCCC----CC----SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHH-SSSCSSEEEE
T ss_pred             CCcccccccCccc----cccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccch-hccCcceEEE
Confidence            3455555555544    7889999999999999999999999999999999999999999999999987 4456888999


Q ss_pred             ecccCC
Q 046437          120 FTPRER  125 (125)
Q Consensus       120 FspR~R  125 (125)
                      ||+|.+
T Consensus        76 ft~~~~   81 (166)
T d1ut7a_          76 FSPRDR   81 (166)
T ss_dssp             EEECCC
T ss_pred             Eeeecc
Confidence            999864