Citrus Sinensis ID: 046440

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MDHDDSLSGLLCPESKTCLDEDSAVLDVEDEDEYVNTLGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNGLENGINHSISFLHHFIRKFCKDSSPSNVLPRTVALILAIMREINLMEHRPSAIAVAATLVAFDQKLTRQALESCCGFLEVGDVSTCYSIMQKLEMEKYKTPDPSATHFGTANVSSSAVSSKRKRLTFNDSDQRSDGPNEKRLR
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHcccHHHHHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHHHHHHHHccccccccccEEccccccccccHHHHHHHcccccccccccccHHHHcc
mdhddslsgllcpesktcldedsavldvededeyvntlgdkeisfgfkrgetdksvmlsDDIKCARLEAIAWILNTRavfgfrpktaYLSVTYLDRflstrfidsdKLWAIKLLSVACVSVAAKMeecnsengahvinnnglenginHSISFLHHFIRKfckdsspsnvlpRTVALILAIMREINLMEHRPSAIAVAATLVAFDQKLTRQALESCCgflevgdvsTCYSIMQKLemekyktpdpsathfgtanvsssavsskrkrltfndsdqrsdgpnekrlr
mdhddslsgllcpesktcldedsavldveDEDEyvntlgdkeisfgfkrgetdksvMLSDDIKCARLEAIAWILntravfgfrpKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNGLENGINHSISFLHHFIRKFCkdsspsnvLPRTVALILAIMREINLMEHRPSAIAVAATLVAFDQKLTRQALESCCGFLEVGDVSTCYSIMQKLEMEKYKTPDPSAThfgtanvsssavsskrkrltfndsdqrsdgpnekrlr
MDHDDSLSGLLCPESKTCLDEDSAVLDVEDEDEYVNTLGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNGLENGINHSISFLHHFIRKFCKDSSPSNVLPRTVALILAIMREINLMEHRPSAIAVAATLVAFDQKLTRQALESCCGFLEVGDVSTCYSIMQKLEMEKYKTPDPSATHFGTanvsssavsskrkrLTFNDSDQRSDGPNEKRLR
***********************AVLDVEDEDEYVNTLGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNGLENGINHSISFLHHFIRKFCKDSSPSNVLPRTVALILAIMREINLMEHRPSAIAVAATLVAFDQKLTRQALESCCGFLEVGDVSTCYSIMQKL**************************************************
***DDSLSGLLCPESKTCLDEDSAVLDVEDEDEYVNTLGDKEISF**************DDIKCARLEAIAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNGLENGINHSISFLHHFIRKFCKDSSPSNVLPRTVALILAIMREINLMEHRPSAIAVAATLVAFDQKLTRQALESCCGFLEVGDVSTCYSIMQ****************************************************
********GLLCPESKTCLDEDSAVLDVEDEDEYVNTLGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNGLENGINHSISFLHHFIRKFCKDSSPSNVLPRTVALILAIMREINLMEHRPSAIAVAATLVAFDQKLTRQALESCCGFLEVGDVSTCYSIMQKLEMEKYKTPDPSATHFG***************LTFN***************
*****SLSGLLCPESKTCLDEDSAVLDVEDEDEYVNTLGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNGLENGINHSISFLHHFIRKFCKDSSPSNVLPRTVALILAIMREINLMEHRPSAIAVAATLVAFDQKLTRQALESCCGFLEVGDVSTCYSIMQKLEMEKYK****SATHF***********************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDHDDSLSGLLCPESKTCLDEDSAVLDVEDEDEYVNTLGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNGLENGINHSISFLHHFIRKFCKDSSPSNVLPRTVALILAIMREINLMEHRPSAIAVAATLVAFDQKLTRQALESCCGFLEVGDVSTCYSIMQKLEMEKYKTPDPSATHFGTANVSSSAVSSKRKRLTFNDSDQRSDGPNEKRLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
Q2V3B2323 Cyclin-D5-1 OS=Arabidopsi yes no 0.968 0.851 0.299 7e-26
Q10QA2345 Cyclin-D5-3 OS=Oryza sati yes no 0.665 0.547 0.342 5e-21
Q0J233308 Cyclin-D2-1 OS=Oryza sati no no 0.778 0.717 0.306 4e-18
Q69QB8342 Cyclin-D3-1 OS=Oryza sati no no 0.757 0.628 0.273 4e-17
P42751339 Cyclin-D1-1 OS=Arabidopsi no no 0.633 0.530 0.282 4e-16
Q2QMW1365 Cyclin-D5-2 OS=Oryza sati no no 0.584 0.454 0.322 5e-16
Q67V81363 Cyclin-D1-1 OS=Oryza sati no no 0.577 0.451 0.308 7e-16
Q0DQA9367 Cyclin-D5-1 OS=Oryza sati no no 0.640 0.495 0.339 6e-15
P42753376 Cyclin-D3-1 OS=Arabidopsi no no 0.707 0.534 0.285 7e-15
Q8H339354 Cyclin-D1-2 OS=Oryza sati no no 0.588 0.471 0.28 2e-14
>sp|Q2V3B2|CCD51_ARATH Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=2 SV=2 Back     alignment and function desciption
 Score =  117 bits (294), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 159/321 (49%), Gaps = 46/321 (14%)

Query: 5   DSLSGLLCPESKTCLDEDS-AVLDVEDEDE--YVNTLGDKEISFGFKRGETDKSVMLSDD 61
           DSL+  LC ES++ L+ED    ++  D+ E  +  T+ D++        E  +   L   
Sbjct: 6   DSLALFLCHESESSLNEDDDETIERSDKQEPHFTTTIDDEDYVADLVLKENLRFETLPSK 65

Query: 62  IKCA--RLEAIAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFI--DSDKLWAIKLLSVA 117
              +  RL AI WIL TR  FGF+ +TAY++++Y D FL  RFI    D+ WA++LLSVA
Sbjct: 66  TTSSSDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGLQKDETWAMRLLSVA 125

Query: 118 CVSVAAKMEE-----CNSENGAH---------------VINNNGLENGINHSISFLHHFI 157
           C+S+AAKMEE      +     H               +++    +  +     + ++F+
Sbjct: 126 CLSLAAKMEERIVPGLSQYPQDHDFVFKPDVIRKTELLILSTLDWKMNLITPFHYFNYFL 185

Query: 158 RKFCKDS---SPSNVLPRTVALILAIMREINLMEHRPSAIAVA-----ATLVAFDQKLTR 209
            K  +D+   S   VL R+   +LA+ +EI+  E+R   +A       ++  + D +LTR
Sbjct: 186 AKISQDNHSVSKDLVLLRSSDSLLALTKEISFTEYRQFVVAAVTTLLASSSTSSDIRLTR 245

Query: 210 QALESCCGFL------EVGDVSTCYSIMQKLEMEKYKTPDPSATHFGTANVSSSAVSSKR 263
           + + +  G +      E  +V  CY    ++E  K+ TP P       +    ++ S  +
Sbjct: 246 EEIANKFGSISWWTSNENENVYLCYQRTLEIEERKHMTPPP---EIAVSREPPASGSGAK 302

Query: 264 KRLTFNDSDQRSDGPNEKRLR 284
           +RL+F+DSDQ S  P  KR+R
Sbjct: 303 RRLSFDDSDQSS--PPAKRMR 321

Arabidopsis thaliana (taxid: 3702)
>sp|Q10QA2|CCD53_ORYSJ Cyclin-D5-3 OS=Oryza sativa subsp. japonica GN=CYCD5-3 PE=2 SV=1 Back     alignment and function description
>sp|Q0J233|CCD21_ORYSJ Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2 Back     alignment and function description
>sp|Q69QB8|CCD31_ORYSJ Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYCD3-1 PE=2 SV=2 Back     alignment and function description
>sp|P42751|CCD11_ARATH Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3 Back     alignment and function description
>sp|Q2QMW1|CCD52_ORYSJ Cyclin-D5-2 OS=Oryza sativa subsp. japonica GN=CYCD5-2 PE=2 SV=1 Back     alignment and function description
>sp|Q67V81|CCD11_ORYSJ Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1 Back     alignment and function description
>sp|Q0DQA9|CCD51_ORYSJ Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYCD5-1 PE=2 SV=2 Back     alignment and function description
>sp|P42753|CCD31_ARATH Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3 Back     alignment and function description
>sp|Q8H339|CCD12_ORYSJ Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
255538076327 cyclin d, putative [Ricinus communis] gi 0.985 0.856 0.475 1e-63
225458826317 PREDICTED: cyclin-D5-1 [Vitis vinifera] 0.968 0.867 0.489 2e-62
356518130314 PREDICTED: cyclin-D5-1-like [Glycine max 0.954 0.863 0.451 1e-59
356509773312 PREDICTED: cyclin-D5-1-like [Glycine max 0.954 0.868 0.432 3e-53
449447295317 PREDICTED: cyclin-D5-1-like [Cucumis sat 0.933 0.835 0.415 7e-52
359359236337 D5-type cyclin [Populus x canadensis] 0.922 0.777 0.431 5e-46
224071313337 predicted protein [Populus trichocarpa] 0.922 0.777 0.428 1e-45
289540884316 cyclin d [Trifolium repens] 0.957 0.860 0.384 1e-41
296087323330 unnamed protein product [Vitis vinifera] 0.904 0.778 0.378 3e-40
224067210326 predicted protein [Populus trichocarpa] 0.771 0.671 0.381 7e-40
>gi|255538076|ref|XP_002510103.1| cyclin d, putative [Ricinus communis] gi|223550804|gb|EEF52290.1| cyclin d, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 156/328 (47%), Positives = 205/328 (62%), Gaps = 48/328 (14%)

Query: 3   HDDSLSGLLCPESKTCLDE-----DSAVL----DVEDEDEYVNTLGDKEISFGFKRGETD 53
            ++S+S LLC ES+T L+E     D A+     D++ E+EYV  L +KEISF   + + D
Sbjct: 2   ENESISELLCQESETRLEEQELGDDEAIRNGFGDLDREEEYVEMLVEKEISFS--KSKED 59

Query: 54  KSVMLSDD-IKCARLEAIAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIK 112
           +S+   D+ +K ARLEAI WIL  RA+FGF  +TAYLS+TY DRFLS R ID +K WA+K
Sbjct: 60  QSLSTFDNWVKFARLEAITWILKNRAIFGFGFQTAYLSITYFDRFLSRRSIDREKSWAVK 119

Query: 113 LLSVACVSVAAKMEEC-------------NSENGA----HVINNNGLENGINHS--ISFL 153
           LLSVAC+S+AAKMEE              N E+       ++  N LE  +  S   +FL
Sbjct: 120 LLSVACLSLAAKMEEIKVPPLSNFQIEEYNFESKVIQRMELLVLNTLEWRMISSTPFAFL 179

Query: 154 HHFIRKFCKDSSPS-NVLPRTVALILAIMREINLMEHRPSAIAVAATLVAFDQKLTRQAL 212
           H+FI KF K+  PS +++ RTV LI A+++EI  MEHRPS IA AA L++ D+ L R+AL
Sbjct: 180 HYFIIKFSKEPPPSRHLVSRTVGLIFAVVKEITSMEHRPSVIAAAAALMSLDRNLIRKAL 239

Query: 213 E------SCCGFLEVGDVSTCYSIMQKLEMEKYKTP-----DPSATHFGTANV-----SS 256
           E      S  GFLE+ DV  CYS+MQKLEMEK+ TP     D   T F   +V      +
Sbjct: 240 ECKIDSISPSGFLEIEDVFQCYSLMQKLEMEKHGTPTFVNSDVWPTQFRPMSVLENSSVT 299

Query: 257 SAVSSKRKRLTFNDSDQRSDGPNEKRLR 284
           SA+SSKRKRL F+DSDQ    P++KR R
Sbjct: 300 SAISSKRKRLAFSDSDQNYGLPDQKRHR 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225458826|ref|XP_002283315.1| PREDICTED: cyclin-D5-1 [Vitis vinifera] gi|302142205|emb|CBI19408.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356518130|ref|XP_003527735.1| PREDICTED: cyclin-D5-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356509773|ref|XP_003523620.1| PREDICTED: cyclin-D5-1-like [Glycine max] Back     alignment and taxonomy information
>gi|449447295|ref|XP_004141404.1| PREDICTED: cyclin-D5-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359359236|gb|AEV41136.1| D5-type cyclin [Populus x canadensis] Back     alignment and taxonomy information
>gi|224071313|ref|XP_002303399.1| predicted protein [Populus trichocarpa] gi|159025723|emb|CAN88862.1| D5-type cyclin [Populus trichocarpa] gi|222840831|gb|EEE78378.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|289540884|gb|ADD09561.1| cyclin d [Trifolium repens] Back     alignment and taxonomy information
>gi|296087323|emb|CBI33697.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224067210|ref|XP_002302410.1| predicted protein [Populus trichocarpa] gi|159025727|emb|CAN88864.1| D5-type cyclin [Populus trichocarpa] gi|222844136|gb|EEE81683.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
TAIR|locus:2120081323 CYCD5;1 "AT4G37630" [Arabidops 0.433 0.380 0.415 2.9e-29
UNIPROTKB|Q10QA2345 CYCD5-3 "Cyclin-D5-3" [Oryza s 0.651 0.536 0.363 1.6e-22
TAIR|locus:2020663339 CYCD1;1 "CYCLIN D1;1" [Arabido 0.221 0.185 0.523 8e-16
TAIR|locus:2124331376 CYCD3;1 "CYCLIN D3;1" [Arabido 0.316 0.239 0.432 2.8e-15
TAIR|locus:2083128361 CYCD3;3 "AT3G50070" [Arabidops 0.246 0.193 0.410 2.3e-12
TAIR|locus:2157172367 CYCD3;2 "AT5G67260" [Arabidops 0.309 0.239 0.362 1.5e-11
TAIR|locus:2142504298 CYCD4;2 "AT5G10440" [Arabidops 0.345 0.328 0.366 1.7e-08
TAIR|locus:2125522302 CYCD6;1 "AT4G03270" [Arabidops 0.214 0.201 0.435 2.2e-08
TAIR|locus:2205871460 CYCA1;1 "Cyclin A1;1" [Arabido 0.338 0.208 0.320 9e-06
TAIR|locus:2185178341 CYCD7;1 "AT5G02110" [Arabidops 0.394 0.328 0.256 1.4e-05
TAIR|locus:2120081 CYCD5;1 "AT4G37630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 222 (83.2 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 54/130 (41%), Positives = 78/130 (60%)

Query:     5 DSLSGLLCPESKTCLDEDS-AVLDVEDEDE--YVNTLGDKEISFGFKRGETDKSVMLSDD 61
             DSL+  LC ES++ L+ED    ++  D+ E  +  T+ D++        E  +   L   
Sbjct:     6 DSLALFLCHESESSLNEDDDETIERSDKQEPHFTTTIDDEDYVADLVLKENLRFETLPSK 65

Query:    62 IKCA--RLEAIAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFI--DSDKLWAIKLLSVA 117
                +  RL AI WIL TR  FGF+ +TAY++++Y D FL  RFI    D+ WA++LLSVA
Sbjct:    66 TTSSSDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGLQKDETWAMRLLSVA 125

Query:   118 CVSVAAKMEE 127
             C+S+AAKMEE
Sbjct:   126 CLSLAAKMEE 135
GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0042023 "DNA endoreduplication" evidence=RCA;IMP
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0010440 "stomatal lineage progression" evidence=RCA
GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA
UNIPROTKB|Q10QA2 CYCD5-3 "Cyclin-D5-3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2020663 CYCD1;1 "CYCLIN D1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124331 CYCD3;1 "CYCLIN D3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083128 CYCD3;3 "AT3G50070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157172 CYCD3;2 "AT5G67260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142504 CYCD4;2 "AT5G10440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125522 CYCD6;1 "AT4G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205871 CYCA1;1 "Cyclin A1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185178 CYCD7;1 "AT5G02110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014953001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (317 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 6e-14
cd0004388 cd00043, CYCLIN, Cyclin box fold 1e-07
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 2e-05
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 4e-04
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score = 66.8 bits (164), Expect = 6e-14
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 66  RLEAIAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKM 125
           R   I W++     F   P+T YL+V YLDRFLS + +   KL   +L+ V C+ +AAK 
Sbjct: 31  RAILIDWLVEVHEEFKLLPETLYLAVNYLDRFLSKQPVPRTKL---QLVGVTCLLIAAKY 87

Query: 126 EECNS 130
           EE   
Sbjct: 88  EEIYP 92

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0653391 consensus Cyclin B and related kinase-activating p 99.97
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.97
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.92
TIGR00569305 ccl1 cyclin ccl1. University). 99.92
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.84
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.81
KOG0835367 consensus Cyclin L [General function prediction on 99.8
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.67
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.66
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.38
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.33
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.27
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.26
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.05
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 98.36
KOG1597308 consensus Transcription initiation factor TFIIB [T 98.07
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 97.94
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 97.9
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 97.49
KOG1598 521 consensus Transcription initiation factor TFIIIB, 97.41
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 97.13
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.19
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 92.84
PRK00423310 tfb transcription initiation factor IIB; Reviewed 92.81
KOG1674218 consensus Cyclin [General function prediction only 89.41
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 83.96
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=8.7e-44  Score=324.07  Aligned_cols=268  Identities=26%  Similarity=0.349  Sum_probs=204.6

Q ss_pred             CcccccCCCccccc---cccCC--C--------CCChHHHHHHHHHHhhccCCCCCCCCcccc-CCcChHHHHHHHHHHH
Q 046440            8 SGLLCPESKTCLDE---DSAVL--D--------VEDEDEYVNTLGDKEISFGFKRGETDKSVM-LSDDIKCARLEAIAWI   73 (284)
Q Consensus         8 ~~l~c~e~~~~~~~---~~~~~--~--------~~~~~e~l~~L~~~E~~~~~~~~~~~~~~~-~~~~~~~~R~~lvdWl   73 (284)
                      ++|+|+|.......   ..|..  .        -.++||++..|+++|.++.|   ..+|... +..+++.||.++++||
T Consensus         9 ~~l~c~E~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~e~~i~~ll~kEe~~~p---~~~~~~~~~~~~~~~~R~~A~~WI   85 (335)
T KOG0656|consen    9 SQLLCHEESTSDEQDRADNDESSTESSIPQLGFLLWDERVLANLLEKEEQHNP---SLDYFLCVQKLILSSMRKQALDWI   85 (335)
T ss_pred             cccccCCCCcccccccccCCcccccccccccccccccHHHHHHHHHHHHHhCC---CCchhhhcccccccHHHHHHHHHH
Confidence            56999998865432   11111  1        24889999999999999755   3444443 4458999999999999


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHHhcCCccCCCchhhHHHHHHHHHHHHHhhhhcCCccH--------------------
Q 046440           74 LNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENG--------------------  133 (284)
Q Consensus        74 ~~v~~~~~l~~eT~~lAv~~lDRfls~~~i~~~~l~~~qLla~acL~IAsK~eE~~~p~~--------------------  133 (284)
                      .+||.++++.++|+++|+|||||||+.+.+++.+.|++||+|+|||+||||+||+.+|.+                    
T Consensus        86 l~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~feaktI~rm  165 (335)
T KOG0656|consen   86 LKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWMLQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFEAKTIQRM  165 (335)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchHHHHHHHHHHHHHHHhhcCcCCchhhhhhhccccccccHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998877                    


Q ss_pred             -HHHHHHcCCcccCCChHHHHHHHHHHhcCCCCC-cchHHHHHHHHHHHHchhhhcCCCHHHHHHHHHHHHHhhhccchh
Q 046440          134 -AHVINNNGLENGINHSISFLHHFIRKFCKDSSP-SNVLPRTVALILAIMREINLMEHRPSAIAVAATLVAFDQKLTRQA  211 (284)
Q Consensus       134 -~~IL~~L~w~l~~pTp~~Fl~~fl~~~~~~~~~-~~~~~~~~~~l~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~~  211 (284)
                       +.||++|+|+|+.+||++|+++|+.+++..+.. ..+..++..++.....|..|+.|+||.||+|++..+.....+...
T Consensus       166 ELLVLstL~Wrl~aVTP~sF~~~fl~ki~~~~~~~~~~~~~~s~~ll~~~~d~~Fl~y~pSviAaa~~~~v~~~~~~l~~  245 (335)
T KOG0656|consen  166 ELLVLSTLKWRLRAVTPFSFIDHFLSKISQKDHNKHLFLKHASLFLLSVITDIKFLEYPPSVIAAAAILSVSASVDGLDF  245 (335)
T ss_pred             HHHHHhhccccccCCCchHHHHHHHHHcCcccchHHHHHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHhhcchhh
Confidence             999999999999999999999999999876443 567788899999999999999999999999999888765544322


Q ss_pred             -----hhHhhcCCChhhHHHHHHHHHHHHHhhcCCC-------------CCCCCccccCCCCCCCCCCCCccccccCCCC
Q 046440          212 -----LESCCGFLEVGDVSTCYSIMQKLEMEKYKTP-------------DPSATHFGTANVSSSAVSSKRKRLTFNDSDQ  273 (284)
Q Consensus       212 -----~~~~~~~~~~~~l~~C~~~m~~l~~~~~~~~-------------~p~~~~~~~~~~~~~~~~~kr~~~~~~~~~~  273 (284)
                           ....+..++++.+..|+..  .+....+...             .+..+.......++.++..|++|..++++..
T Consensus       246 ~~~~~~~~~~~~l~~e~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~rr~~~~~~~~  323 (335)
T KOG0656|consen  246 REYENNLLSLLSLSKEKVNRCYDH--FLSKILNSESDCLRGEASNESGEASLRDSSSSSSQSPNSPSLKKRRVSSDKERK  323 (335)
T ss_pred             hhhhHHHHHHHHhhHHhhhcchhh--hhhhccCCccccccHHHHhhhhcccccccchhccCCCCcccccccccccccccc
Confidence                 1245667788888888881  1111111111             1111111222222335556667788887666


Q ss_pred             CCCCCCC
Q 046440          274 RSDGPNE  280 (284)
Q Consensus       274 ~~~~~~~  280 (284)
                      .+.+|++
T Consensus       324 ~s~~~~~  330 (335)
T KOG0656|consen  324 QSSPPTE  330 (335)
T ss_pred             cCCCCcc
Confidence            6666643

>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 3e-04
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 3e-04
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 3e-04
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 4e-04
1vin_A268 Bovine Cyclin A3 Length = 268 4e-04
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 4e-04
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 4e-04
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 4e-04
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 5e-04
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 5e-04
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 9e-04
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure 
Iteration: 1

 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 26/200 (13%)
Query: 24  AVLDVEDEDEYVNT-LGDKEISFGFKRGETDKSVMLSDDIKCARLEAIAWILNTRAVFGF 82
           +V +V D  E ++T L + E+    K G   K     D     R   + W++     +  
Sbjct: 1   SVNEVPDYHEDIHTYLREMEVKCKPKVGYMKKQ---PDITNSMRAILVDWLVEVGEEYKL 57
Query: 83  RPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENGAHVINNNG- 141
           + +T +L+V Y+DRFLS+  +   KL   +L+  A + +A+K EE      A  +     
Sbjct: 58  QNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKFEEIYPPEVAEFVYITDD 114
Query: 142 ---------LENGINHSISF------LHHFIRKFCKDSSPSNVLPRTVALILAIMREIN- 185
                    +E+ +   ++F      ++ F+ ++     P+N    ++A+ L  +  I+ 
Sbjct: 115 TYTKKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDA 174
Query: 186 --LMEHRPSAIAVAATLVAF 203
              +++ PS IA AA  +A 
Sbjct: 175 DPYLKYLPSVIAAAAFHLAL 194
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 3e-19
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 6e-19
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 8e-16
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 9e-15
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 2e-13
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 4e-13
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-12
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 2e-12
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 1e-06
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 4e-04
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
 Score = 84.4 bits (209), Expect = 3e-19
 Identities = 44/226 (19%), Positives = 78/226 (34%), Gaps = 39/226 (17%)

Query: 1   MDHDDSLSGLLCPESKTCLDEDSAVLDVED-EDEYVNTLGDKEISFGFKRGETDKSVMLS 59
           M+H      LLC E +       A  D     D  +  +   E +             + 
Sbjct: 1   MEHQ-----LLCCEVE---TIRRAYPDANLLNDRVLRAMLKAEETC---APSVSYFKCVQ 49

Query: 60  DDIK-CARLEAIAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVAC 118
            ++    R     W+L          +   L++ YLDRFLS   +   +L   +LL   C
Sbjct: 50  KEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRL---QLLGATC 106

Query: 119 VSVAAKMEECNS---ENGAHVINN---------------NGLENGINH--SISFLHHFIR 158
           + VA+KM+E      E      +N               N L+  +       F+ HF+ 
Sbjct: 107 MFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLS 166

Query: 159 KFCKDSSPSNVLPRTVA--LILAIMREINLMEHRPSAIAVAATLVA 202
           K  +      ++ R  A   +     ++  + + PS +A  + + A
Sbjct: 167 KMPEAEENKQII-RKHAQTFVALCATDVKFISNPPSMVAAGSVVAA 211
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.97
2ivx_A257 Cyclin-T2; transcription regulation, cell division 99.97
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 99.97
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.97
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.96
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.96
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.89
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.8
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.51
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.04
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.36
1ais_B200 TFB TFIIB, protein (transcription initiation facto 95.61
1c9b_A207 General transcription factor IIB; protein-DNA comp 94.08
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 89.91
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 85.06
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 83.94
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 81.05
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.7e-43  Score=321.69  Aligned_cols=225  Identities=16%  Similarity=0.166  Sum_probs=177.6

Q ss_pred             cccccC-CCccccccccCCCCCChHHHHHHHHHHhhccCCCCCCCCccc-cCCcChHHHHHHHHHHHHHHHHHcCCChHH
Q 046440            9 GLLCPE-SKTCLDEDSAVLDVEDEDEYVNTLGDKEISFGFKRGETDKSV-MLSDDIKCARLEAIAWILNTRAVFGFRPKT   86 (284)
Q Consensus         9 ~l~c~e-~~~~~~~~~~~~~~~~~~e~l~~L~~~E~~~~~~~~~~~~~~-~~~~~~~~~R~~lvdWl~~v~~~~~l~~eT   86 (284)
                      +|+|.| .++.... ..+.+-.|++|++++|+++|.++.|   ..+|.. .+.++++.||.++|+||++|+..|++.++|
T Consensus        16 ~l~~~e~~~~~~~a-~~dp~l~~~~~i~~~l~~~E~~~~p---~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t   91 (306)
T 3g33_B           16 ELLCCEGTRHAPRA-GPDPRLLGDQRVLQSLLRLEERYVP---RASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEV   91 (306)
T ss_dssp             ----------------------CHHHHHHHHHHHGGGGSC---SSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTH
T ss_pred             ceeeeccccccccc-CCCCcccchHHHHHHHHHHHHHhCC---CcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhH
Confidence            699999 3322211 1223445899999999999999855   345654 456899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCccCCCchhhHHHHHHHHHHHHHhhhhcCCccH--------------------HHHHHHcCCcccC
Q 046440           87 AYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKMEECNSENG--------------------AHVINNNGLENGI  146 (284)
Q Consensus        87 ~~lAv~~lDRfls~~~i~~~~l~~~qLla~acL~IAsK~eE~~~p~~--------------------~~IL~~L~w~l~~  146 (284)
                      +++||+|||||+++..+.+.++   ||+|+||||||+|+||..+|.+                    +.||++|+|+++.
T Consensus        92 ~~lAv~~lDRfls~~~v~~~~l---qLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~  168 (306)
T 3g33_B           92 FPLAMNYLDRYLSCVPTRKAQL---QLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAA  168 (306)
T ss_dssp             HHHHHHHHHHHHHHCCCCGGGH---HHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCC
T ss_pred             HHHHHHHHHHHHhcCCCcHHHH---HHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCC
Confidence            9999999999999999999999   9999999999999999988776                    9999999999999


Q ss_pred             CChHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHHHHchhhhcCCCHHHHHHHHHHHHHhhhccch----hhh---HhhcC
Q 046440          147 NHSISFLHHFIRKFCKDSSPSN-VLPRTVALILAIMREINLMEHRPSAIAVAATLVAFDQKLTRQ----ALE---SCCGF  218 (284)
Q Consensus       147 pTp~~Fl~~fl~~~~~~~~~~~-~~~~~~~~l~~~l~d~~~l~~~PS~iAaAai~~A~~~~~~~~----~~~---~~~~~  218 (284)
                      |||++||.+|+..++....... +...+.++++.++.++.|+.|+||.||+|||++|+..+....    .|.   ..++|
T Consensus       169 ~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg  248 (306)
T 3g33_B          169 VIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITG  248 (306)
T ss_dssp             CCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHC
Confidence            9999999999998875533222 345677889999999999999999999999999987654322    233   46789


Q ss_pred             CChhhHHHHHHHHHHHHHhhcC
Q 046440          219 LEVGDVSTCYSIMQKLEMEKYK  240 (284)
Q Consensus       219 ~~~~~l~~C~~~m~~l~~~~~~  240 (284)
                      |++++|.+|++.|.+++....+
T Consensus       249 ~~~~~l~~c~~~I~~l~~~~l~  270 (306)
T 3g33_B          249 TEVDCLRACQEQIEAALRESLR  270 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHHTC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999997553
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 284
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 5e-11
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 1e-10
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 3e-10
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 1e-09
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 4e-09
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 4e-09
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 1e-08
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 2e-06
d2cchb2124 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [T 0.003
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 5e-11
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 66  RLEAIAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLWAIKLLSVACVSVAAKM 125
           R   + W++    V+    +T YL+  + DR+++T+   +     ++L+ ++ + +AAK+
Sbjct: 43  RAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQE--NVVKTLLQLIGISSLFIAAKL 100

Query: 126 EECNS 130
           EE   
Sbjct: 101 EEIYP 105
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.95
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.94
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.94
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.93
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.9
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.73
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.68
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.66
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.31
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.55
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 98.54
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.48
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 97.87
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.5
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.39
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.25
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 96.97
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 96.93
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 96.2
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 96.01
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 95.7
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 94.52
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 91.31
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]

Probab=99.95  E-value=1.1e-27  Score=191.38  Aligned_cols=109  Identities=16%  Similarity=0.228  Sum_probs=99.7

Q ss_pred             hHHHHHHHHHHhhccCCCCCCCCcccc-CCcChHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCccCCCchh
Q 046440           31 EDEYVNTLGDKEISFGFKRGETDKSVM-LSDDIKCARLEAIAWILNTRAVFGFRPKTAYLSVTYLDRFLSTRFIDSDKLW  109 (284)
Q Consensus        31 ~~e~l~~L~~~E~~~~~~~~~~~~~~~-~~~~~~~~R~~lvdWl~~v~~~~~l~~eT~~lAv~~lDRfls~~~i~~~~l~  109 (284)
                      +|+++++|++.|.+|.|   ..+|... +.++++.||..+++||.+|+..++++++|+|+||+|||||+++..++++++ 
T Consensus         3 ~~~i~~~l~~~E~~~~p---~~~y~~~~q~~it~~~R~~lidWl~~v~~~~~l~~et~~lAv~llDrfls~~~v~~~~l-   78 (132)
T d1g3nc1           3 EDRIFYNILEIEPRFLT---SDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHF-   78 (132)
T ss_dssp             HHHHHHHHHHHGGGGCC---CGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHH-
T ss_pred             hHHHHHHHHHHHHHHCC---ChHHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCcccCcHHHH-
Confidence            68999999999999855   3455433 568999999999999999999999999999999999999999999999999 


Q ss_pred             hHHHHHHHHHHHHHhhhhcCCccH--------------------HHHHHHcCCccc
Q 046440          110 AIKLLSVACVSVAAKMEECNSENG--------------------AHVINNNGLENG  145 (284)
Q Consensus       110 ~~qLla~acL~IAsK~eE~~~p~~--------------------~~IL~~L~w~l~  145 (284)
                        ||+|+|||+||+|+||..+|.+                    +.||++|+|++.
T Consensus        79 --qLia~tcl~iAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~w~l~  132 (132)
T d1g3nc1          79 --QKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTE  132 (132)
T ss_dssp             --HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             --HHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCC
Confidence              9999999999999999998876                    899999999973
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure