Citrus Sinensis ID: 046458

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960

MREEVISSGGTVDPTPAASSAGASSPAAPANVGSIDWSGHGHNSKAASVSCVGSQPPRTSLSTSAGGSILGSSRPSCRPWERGDLLRRLATFKPSNWFGKPKLASSLACAQRGWMNIDVDRIACESCAACLSFVSVPNWTPAEVEDAGQAFSKQLDDGHNINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGLLQFQSLPIIATCAIEHMWVSRGPQIDRLLSQSQNLIVGEVDMKPELENSRDGAFYLYSRAQKLISLCGWEPRWLPNVQDCEEHSAQSARDGCSFGPTEAQVQLTKDPGPSKNAISASAKRDTGKNKMFAVESRPEYRSPLLDCSLCGATVRILDFLTVPRPARFAPNNIDIPDTSKKMGMTRGVSAASGISGWVAADDPEKEQTEDRDEVATTDEGKLQQNTEFDLNLTIGGGLPFTQAGRTAISENVHDADMGRDLMIGQPAGSEVGDRAASYESRGPSSRKRSLEIGGSSEDRPNLRMQQADSVEGTVIDRDGDEVTDSRQYSAGPSKRARELDIFDSNCSPYLRDSSGAGPSQSVGLEIHADGNRGSLFRQGSEQVIGVVSTRDSTRASSVIAMDTVCHSADDDSMESVENSPGGVDDVNFPSSSAYGFFDMNETSELNNSNQAQQSIYSRRATEVVPGEMGISSTNNDGEEIFNAETVTAQARDGFSFGISGGSVGMCASHEAEIHGADVSVHRADSVVGDVEPRIEDAENQGQTGESAPDPGSMDEIVPDEVNREDPHGDSQEMLSRSVGRADSGSKIDGSAKAESVESGEKVSQSCKIAQDTSAHPSLSCNANIYSGYNTTKNEVTKTGKSSSTNNCPYPESEYAVANGIGPPKGESNYEEATEFDPIAHHNQFCPWVNGNVAAAGCNGSGSSNSADAIALCGWQLTLDALDTLRSLGHIPIQTVQSESAASLYKDDHQTPGRKLLRRHSMSKSHGQH

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHcccccccccEEEcccccEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccHHccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHcccccccccccccc

cccEEEcccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHcccEEccccEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHcccEEEEEEEEcccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccHccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEEcccccccccccEEEcccccEEEccccccccccccHHHHHHcccccccccccccccccccHHccccccccccHHHHHHcccEccccccEcccccccccccccEcccccEcccccccccccccccEEEEcccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHcccccccEcccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccccccccHHHHcccccccccccc

mreevissggtvdptpaassagasspaapanvgsidwsghghnskaasvscvgsqpprtslstsaggsilgssrpscrpwergDLLRRlatfkpsnwfgkpklaSSLACAqrgwmnidvdrIACESCAAClsfvsvpnwtpaeveDAGQAFSkqlddghnincpwrgnscpeslvqfpptpqsaliggykdrcdgllqfqslpiiATCAIehmwvsrgpqidRLLSQSQnlivgevdmkpelensrdgAFYLYSRAQKLISLcgweprwlpnvqdceehsaqsardgcsfgpteaqvqltkdpgpsknaisasakrdtgknkmfavesrpeyrsplldcslcgatvrildfltvprparfapnnidipdtskkmgmtrgvsaasgisgwvaaddpekeqtedrdevattdegklqqntefdlnltiggglpftqagrtaisenvhdadmgrdlmigqpagsevgdraasyesrgpssrkrsleiggssedrpnlrmqqadsvegtvidrdgdevtdsrqysagpskrareldifdsncspylrdssgagpsqsvgleihadgnrgslfrqgseqVIGVVSTRDSTRASSVIAMdtvchsadddsmesvenspggvddvnfpsssaygffdmnetselnnsnqaQQSIYSrratevvpgemgisstnndgeeifnaetvtaqardgfsfgisggsvgmcasheaeihgadvsvhradsvvgdvepriedaenqgqtgesapdpgsmdeivpdevnredphgdsqemlsrsvgradsgskidgsakaesvesgekvsqsckiaqdtsahpslscnaniysgynttknevtktgkssstnncpypeseyavangigppkgesnyeeatefdpiahhnqfcpwvngnvaaagcngsgssnsaDAIALCGWQLTLDALDTlrslghipiqtvqsesaaslykddhqtpgrkllrrhsmskshgqh

mreevissggtvdptpaassagasspaAPANVGSIDWSGHGHNSKAASVSCVGSQPPRTSlstsaggsilgssrpscrpwERGDLLRRLATfkpsnwfgkpklASSLACAQRGWMNIDVDRIACESCAACLSFVSVPNWTPAEVEDAGQAFSKQLDDGHNINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGLLQFQSLPIIATCAIEHMWVSRGPQIDRLLSQSQNLIVGEVDMKPELENSRDGAFYLYSRAQKLISLCGWEPRWLPNVQDCEEHSAQSARDGCSFGPTEAQVqltkdpgpsknaisasakrdtgknKMFAvesrpeyrsplLDCSLCGATVRILDFltvprparfapnnidipdtskkmGMTRGVSAasgisgwvaaddpekeqtedrdevattdegklqqntefDLNLTIGGGLPFTQAGRTAISENVHDADMGRDLMIGqpagsevgdraasyesrgpssrkrsleiggssedrpnlrmqqadsvegtvidrdgdevtdsrqysagpskrareldIFDSNCSPYLRDSSGAGPSQSVGLEIHADGNRGSLFRQGSEQVIGVVstrdstrassVIAMDTVCHSADDDSMESVENSPGGVDDVNFPSSSAYGFFDMNETSELNNSNQAQQSIYSRRATEVVPGEmgisstnndgeEIFNAETVTAQARDGFSFGISGGSVGMCASHEAEIHGADVSVHRADSVVGDVEpriedaenqgqtgesapdpgsMDEIVPDEVNREdphgdsqemlsrsvgradsgskidGSAKAESVESGEKVSQSCKIAQdtsahpslscNANIYSGYNTTKNevtktgkssstnncpYPESEYAVANGIGPPKGESNYEEATEFDPIAHHNQFCPWVNGNVAAAGCNGSGSSNSADAIALCGWQLTLDALDTLRSLGHIPIQTVqsesaaslykddhqtpgrkllrrhsmskshgqh

MREEVISSGGTVDptpaassagasspaapaNVGSIDWSGHGHNSKAASVSCVGSQPPRTSLSTSAGGSILGSSRPSCRPWERGDLLRRLATFKPSNWFGKPKLASSLACAQRGWMNIDVDRIACESCAACLSFVSVPNWTPAEVEDAGQAFSKQLDDGHNINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGLLQFQSLPIIATCAIEHMWVSRGPQIDRLLSQSQNLIVGEVDMKPELENSRDGAFYLYSRAQKLISLCGWEPRWLPNVQDCEEHSAQSARDGCSFGPTEAQVQLTKDPGPSKNAISASAKRDTGKNKMFAVESRPEYRSPLLDCSLCGATVRILDFLTVPRPARFAPNNIDIPDTSKKMGMTRGVSAASGISGWVAADDPEKEQTEDRDEVATTDEGKLQQNTEFDLNLTIGGGLPFTQAGRTAISENVHDADMGRDLMIGQPAGSEVGDRAASYESRGPSSRKRSLEIGGSSEDRPNLRMQQADSVEGTVIDRDGDEVTDSRQYSAGPSKRARELDIFDSNCSPYLRDSSGAGPSQSVGLEIHADGNRGSLFRQGSEQVIGVVSTRDSTRASSVIAMDTVCHSADDDSMESVENSPGGVDDVNFPSSSAYGFFDMNETSELNNSNQAQQSIYSRRATEVVPGEMGISSTNNDGEEIFNAETVTAQARDgfsfgisggsvgMCASHEAEIHGADVSVHRADSVVGDVEPRIEDAENQGQTGESAPDPGSMDEIVPDEVNREDPHGDSQEMLSRSVGRADSGSKIDGSAKAESVESGEKVSQSCKIAQDTSAHPSLSCNANIYSGYNTTKNEVTKTGKSSSTNNCPYPESEYAVANGIGPPKGESNYEEATEFDPIAHHNQFCPWvngnvaaagcngsgssnsaDAIALCGWQLTLDALDTLRSLGHIPIQTVQSESAASLYKDDHQTPGRKLLRRHSMSKSHGQH

*******************************************************************************WERGDLLRRLATFKPSNWFGKPKLASSLACAQRGWMNIDVDRIACESCAACLSFVSVPNWTPAEVEDAGQAFSKQLDDGHNINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGLLQFQSLPIIATCAIEHMWVSRGPQIDRLLSQSQNLIVGEVDM******SRDGAFYLYSRAQKLISLCGWEPRWLPNVQD*********************************************************RSPLLDCSLCGATVRILDFLTVPRPARFAPNNI******************************************************FDLNLTIGGGLPFTQAGRT*****************************************************************************************************************************************IGV**********************************************************************************************FNAETVTAQARDGFSFGISGGSVGMCASHEAEIHGADVSV**********************************************************************************************************************************************************FDPIAHHNQFCPWVNGNVAAAGCNGSGSSNSADAIALCGWQLTLDALDTLRSLGHIPIQTV*********************************

*******************************************************************************WERGDLLRRLATFKPSNWFGKPKLASSLACAQRGWMNIDVDRIACESCAACLSFVSVPNWTPAEVEDAGQAFSKQLDDGHNINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGLLQFQSLPIIATCAIE************LLSQ*************************YSRAQKLISLCGWEPRW********************************************************************DCSLCGATVRILD***************************************************************************I*********************************************************************************************************************************************************************A**TV***********VENSPGGVDDVNFPSSSAY*********************************************IFNAETVTAQARDGFSFGISGGSV*************************************************************************************************************************************************************************TEFDPIAHHNQFCPWVNGNVAAAG***************CGWQLTLDALD**********************************************

*****************************ANVGSIDWSG*************************************CRPWERGDLLRRLATFKPSNWFGKPKLASSLACAQRGWMNIDVDRIACESCAACLSFVSVPNWTPAEVEDAGQAFSKQLDDGHNINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGLLQFQSLPIIATCAIEHMWVSRGPQIDRLLSQSQNLIVGEVDMKPELENSRDGAFYLYSRAQKLISLCGWEPRWLPNVQD*************SFGPTEAQVQLTKDPGPSKNAISASAKRDTGKNKMFAVESRPEYRSPLLDCSLCGATVRILDFLTVPRPARFAPNNIDIPDTSKKMGMTRGVSAASGISGWVAA******************EGKLQQNTEFDLNLTIGGGLPFTQAGRTAISENVHDADMGRDLMIGQPAG*************************GSSEDRPNLRMQQADSVEGTVIDRDGD***************ARELDIFDSNCSPYLR********QSVGLEIHADGNRGSLFRQGSEQVIGVVSTRDSTRASSVIAMDTVCHSADDDSMESVENSPGGVDDVNFPSSSAYGFFDMNETSELNNSNQAQQSIYSRRATEVVPGEMGISSTNNDGEEIFNAETVTAQARDGFSFGISGGSVGMCASHEAEIHGADVSVHRADSVVGDVEPRIE***************GSMDEIVPDEVNR****************************************************PSLSCNANIYSGYNTTKN************NCPYPESEYAVANGIGPPKGESNYEEATEFDPIAHHNQFCPWVNGNVAAAGCNGSGSSNSADAIALCGWQLTLDALDTLRSLGHIPIQTVQSESAASLYKDDHQTPGRKLL************

***************************************************************************SCRPWERGDLLRRLATFKPSNWFGKPKLASSLACAQRGWMNIDVDRIACESCAACLSFVSVPNWTPAEVEDAGQAFSKQLDDGHNINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGLLQFQSLPIIATCAIEHMWVSRGPQIDRLLSQSQNLI************SRDGAFYLYSRAQKLISLCGWEPRWLPNVQDCE******************************************************YRSPLLDCSLCGATVRILDFLTVPRPARFAPNNI****************************************************TEFDLNLTIGGGLPFTQAGRTAISENVHDADMGRDLMIGQPAGSEVGDRAASYE***********************************I**************************************************IHAD************************RASSVIAMDTVCHSAD***ME****SPGGVDDVNFPSSSAYGFFDMNETSELNNSNQAQQSIYSRRATEVVPGEMGISSTNNDGEEIFNAETVTAQARDGFSFGISGGSVGMCASHEAEIHGADVSVHRADSVVGDVEPRIEDAENQGQT********SMDEIVPDEVN*************************************EKVSQSCKIAQDTSAHPSLSCNANIYSGYNTTKNEVTKTGKSSSTNNCPYPESEYAVANGIGPPKGESNYEEATEFDPIAHHNQFCPWVNGNVAAAGCNG***SNSADAIALCGWQLTLDALDTLRSL*****************************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		960	2.2.26 [Sep-21-2011]
Q5M8S7		478	NIPA-like protein OS=Xeno	yes	no	0.180	0.361	0.270	2e-08
Q80YV2		501	Nuclear-interacting partn	yes	no	0.122	0.235	0.295	5e-08
Q6P7H4		477	NIPA-like protein OS=Xeno	N/A	no	0.180	0.362	0.260	1e-07
Q5R8V9		502	Nuclear-interacting partn	yes	no	0.122	0.235	0.286	7e-07
Q86WB0		502	Nuclear-interacting partn	yes	no	0.122	0.235	0.286	1e-06

>sp\|Q5M8S7\|NIPA_XENTR NIPA-like protein OS=Xenopus tropicalis GN=zc3hc1 PE=2 SV=1	Back alignment and function desciption

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 8/181 (4%)

Query: 88  RLATFKPSNWFGKPKLASSLACAQRGWMNIDVDRIACESCAACLSFVSVPNWTPAEVEDA 147
           R+ +F    W GKP     L CA+ GW NI+ D + C SC A L     P    ++ +  
Sbjct: 72  RVESFSSLKWAGKPSELCPLICAKYGWSNIECDMLKCSSCNAYLCASLQPVLDFSKYKQR 131

Query: 148 GQAFSKQLDDGHNINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGLLQFQ-SLPIIA 206
                + L   H   C W  + CP+       T  S+++  +  R D L   +  LP I 
Sbjct: 132 CVELQEALRKAHEKFCFWPDSPCPDYFWALMVTEPSSVLSDFVGRFDNLCHLEIQLPSIK 191

Query: 207 TCAIEHMWVSRGPQIDRLLSQSQNLIVGEVDMKPELE-NSRDGAFYLYSRAQK-LISLCG 264
              +++M ++     +  +S    LI  E+  K   E NSR  +  L       +++LCG
Sbjct: 192 HEDLKNMDIT-----EETVSHLLRLIEDELKSKDGREDNSRLASDSLQVHISACILALCG 246

Query: 265 W 265
           W
Sbjct: 247 W 247

Probable component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1).
Xenopus tropicalis (taxid: 8364)

>sp\|Q80YV2\|NIPA_MOUSE Nuclear-interacting partner of ALK OS=Mus musculus GN=Zc3hc1 PE=1 SV=1	Back alignment and function description

>sp\|Q6P7H4\|NIPA_XENLA NIPA-like protein OS=Xenopus laevis GN=zc3hc1 PE=2 SV=1	Back alignment and function description

>sp\|Q5R8V9\|NIPA_PONAB Nuclear-interacting partner of ALK OS=Pongo abelii GN=ZC3HC1 PE=2 SV=1	Back alignment and function description

>sp\|Q86WB0\|NIPA_HUMAN Nuclear-interacting partner of ALK OS=Homo sapiens GN=ZC3HC1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		960
147846791		951	hypothetical protein VITISV_032620 [Viti	0.984	0.993	0.790	0.0
255584497		906	conserved hypothetical protein [Ricinus	0.935	0.991	0.814	0.0
359483639		935	PREDICTED: uncharacterized protein LOC10	0.968	0.994	0.785	0.0
356512325		992	PREDICTED: uncharacterized protein LOC10	0.990	0.958	0.729	0.0
356528224		910	PREDICTED: uncharacterized protein LOC10	0.937	0.989	0.718	0.0
449454967		921	PREDICTED: uncharacterized protein LOC10	0.95	0.990	0.691	0.0
449524498		921	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.95	0.990	0.691	0.0
222625923		943	hypothetical protein OsJ_12854 [Oryza sa	0.970	0.988	0.560	0.0
108711429		943	expressed protein [Oryza sativa Japonica	0.970	0.988	0.560	0.0
218193860		943	hypothetical protein OsI_13792 [Oryza sa	0.970	0.988	0.559	0.0

>gi\|147846791\|emb\|CAN80628.1\| hypothetical protein VITISV_032620 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1523 bits (3943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 762/964 (79%), Positives = 833/964 (86%), Gaps = 19/964 (1%)

Query: 1   MREEVISSG-GTVDPTPAASSAGASSPAAPANVGSIDWSGHGHNSKAASVSCVGSQPPRT 59
           MREEV+SSG    DP+PAASSAGASSPA P NVGSIDWS HGH SKAAS+SC+GSQ PRT
Sbjct: 1   MREEVMSSGDAKFDPSPAASSAGASSPAVPTNVGSIDWSSHGHGSKAASLSCIGSQQPRT 60

Query: 60  SLSTSAGGSILGSSRPSCRPWERGDLLRRLATFKPSNWFGKPKLASSLACAQRGWMNIDV 119
           SLSTSAGGS LGSSR SCRPWERGDLLRRLATFKPSNWFGKPK+ASSLACAQRGW+N+DV
Sbjct: 61  SLSTSAGGSALGSSRTSCRPWERGDLLRRLATFKPSNWFGKPKVASSLACAQRGWINVDV 120

Query: 120 DRIACESCAACLSFVSVPNWTPAEVEDAGQAFSKQLDDGHNINCPWRGNSCPESLVQFPP 179
           D+I CESC A LSFVS+P+ TPAEV+ AG+AF K+LD  H +NCPWRGNSCPES+VQFPP
Sbjct: 121 DKIMCESCGAYLSFVSLPSGTPAEVDSAGEAFGKELDTEHKVNCPWRGNSCPESMVQFPP 180

Query: 180 TPQSALIGGYKDRCDGLLQFQSLPIIATCAIEHMWVSRGPQIDRLLSQSQNLIVGEVDMK 239
           TPQSALIGGYKDRCDGLLQF SLPI+A  A+E M  SRG QI+RLLSQSQN + GEVD +
Sbjct: 181 TPQSALIGGYKDRCDGLLQFXSLPIVAASAVEQMRASRGSQIERLLSQSQNFMGGEVDFR 240

Query: 240 ----PELENSRDGAFYLYSRAQKLISLCGWEPRWLPNVQDCEEHSAQSARDGCSFGPTEA 295
               PELE SRDG  YLYSRAQKLISLCGWEPRWLPNVQDCEEHSAQSAR+GCSFGPT+A
Sbjct: 241 SESIPELEASRDGVIYLYSRAQKLISLCGWEPRWLPNVQDCEEHSAQSARNGCSFGPTQA 300

Query: 296 QVQLTKDPGPSKNAISASAKRDTGKNKMFAVESRPEYRSPLLDCSLCGATVRILDFLTVP 355
           QV L+ DPGPSKNA+SASAK+DTGKNKM AVESR E RSPLLDCSLCGATVRI DFLTVP
Sbjct: 301 QVHLSLDPGPSKNAVSASAKKDTGKNKMLAVESRCESRSPLLDCSLCGATVRIWDFLTVP 360

Query: 356 RPARFAPNNIDIPDTSKKMGMTRGVSAASGISGWVAADDPEKEQTEDRDEVATTDEGKLQ 415
           RPARFAPN IDIPDTSKKM +TRG SAASG+SGWVAADD EKEQTEDRDEVATT+EGKL 
Sbjct: 361 RPARFAPNXIDIPDTSKKMALTRGASAASGVSGWVAADDMEKEQTEDRDEVATTNEGKLL 420

Query: 416 QNTEFDLNLTIGGGLPFTQAGRTAISENVHDADMGRDLMIGQPAGSEVGDRAASYESRGP 475
            NT+ DLNLT+ GGL FTQ GRTA+SEN+HDADMGRDLMIGQP+GSEVGDRAASYESRGP
Sbjct: 421 PNTDVDLNLTMAGGLSFTQMGRTAMSENMHDADMGRDLMIGQPSGSEVGDRAASYESRGP 480

Query: 476 SSRKRSLEIGGSSEDRPNLRMQQADSVEGTVIDRDGDEVTDSRQYSAGPSKRARELDIFD 535
           SSRKRSLEIG SS+DRP+LRMQQADS+EGTVIDRDGDEVTD RQYSAGPSKRAR+ DIFD
Sbjct: 481 SSRKRSLEIGASSDDRPHLRMQQADSIEGTVIDRDGDEVTDGRQYSAGPSKRARDSDIFD 540

Query: 536 SNCSPYLRDSSGAGPSQSVGLEIHADGNRGSLFRQGSEQVIGVVSTRDSTRASSVIAMDT 595
           + CSPY RDSSGAGPS S+G EI+AD N+G  FRQGS+QV+G+ S RDSTRASSVIAMDT
Sbjct: 541 TYCSPYNRDSSGAGPSHSLGFEIYADANKGVPFRQGSDQVVGISSARDSTRASSVIAMDT 600

Query: 596 VCHSADDDSMESVENSPGGVDDVNFPSSSAYGFFDMNETSELNNSNQAQQSIYSRRATEV 655
           + HSA+++SMESVEN PG +DDV FPSSS YG  DMN+TSE+N SNQAQQSI  + A EV
Sbjct: 601 IGHSANENSMESVENYPGDIDDVQFPSSSIYGNLDMNDTSEMNYSNQAQQSICFQPAAEV 660

Query: 656 VPGEMGISSTNNDGEEIFNAETVTAQARDGFSFGISGGSVGMCASHEAEIHGADVSVHRA 715
           VPGE G              E VTAQARDGFSFGISGGSVGMCASHEAEIHG D+SVHRA
Sbjct: 661 VPGEYG--------------EIVTAQARDGFSFGISGGSVGMCASHEAEIHGTDISVHRA 706

Query: 716 DSVVGDVEPRIEDAENQGQTGESAPDPGSMDEIVPDEVNREDPHGDSQEMLSRSVGRADS 775
           DSVVGDVEPR EDAENQGQTGESAP PG MDEIVP+E+NREDPHGDSQEMLSRSVGRADS
Sbjct: 707 DSVVGDVEPRTEDAENQGQTGESAPGPGLMDEIVPEEMNREDPHGDSQEMLSRSVGRADS 766

Query: 776 GSKIDGSAKAESVESGEKVSQSCKIAQDTSAHPSLSCNANIYSGYNTTKNEVTKTGKSSS 835
           GSKIDGSAKAESVESGEK+ QS K+ Q+ +  PS SCNA +YSG  T+K EVT+ GK+S 
Sbjct: 767 GSKIDGSAKAESVESGEKIGQSHKLPQENNNLPSFSCNAIVYSGQETSKKEVTRGGKASL 826

Query: 836 TNNCPYPESEYAVANGIGPPKGESNYEEATEFDPIAHHNQFCPWVNGNVAAAGCNGSGSS 895
             +    E +YA ANGIGPPKGESNYEEA EFDPI HHNQFCPWVNGNVAAAGC+  GSS
Sbjct: 827 RKDSEDLELDYAAANGIGPPKGESNYEEAIEFDPIIHHNQFCPWVNGNVAAAGCSNGGSS 886

Query: 896 NSADAIALCGWQLTLDALDTLRSLGHIPIQTVQSESAASLYKDDHQTPGRKLLRRHSMSK 955
           ++AD +A CGWQLTLDALD LRSLGH+PIQTVQSESAASLYKD+HQTPG KL    S SK
Sbjct: 887 STADIVAHCGWQLTLDALDALRSLGHLPIQTVQSESAASLYKDNHQTPGGKLRGPQSASK 946

Query: 956 SHGQ 959
           SHGQ
Sbjct: 947 SHGQ 950

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255584497\|ref\|XP_002532977.1\| conserved hypothetical protein [Ricinus communis] gi\|223527241\|gb\|EEF29401.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|359483639\|ref\|XP_002272068.2\| PREDICTED: uncharacterized protein LOC100254898 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356512325\|ref\|XP_003524870.1\| PREDICTED: uncharacterized protein LOC100785647 [Glycine max]	Back alignment and taxonomy information

>gi\|356528224\|ref\|XP_003532705.1\| PREDICTED: uncharacterized protein LOC100803736 [Glycine max]	Back alignment and taxonomy information

>gi\|449454967\|ref\|XP_004145225.1\| PREDICTED: uncharacterized protein LOC101222096 [Cucumis sativus] gi\|449471367\|ref\|XP_004153288.1\| PREDICTED: uncharacterized protein LOC101212109 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449524498\|ref\|XP_004169259.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101228298 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|222625923\|gb\|EEE60055.1\| hypothetical protein OsJ_12854 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|108711429\|gb\|ABF99224.1\| expressed protein [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|218193860\|gb\|EEC76287.1\| hypothetical protein OsI_13792 [Oryza sativa Indica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		960
TAIR\|locus:2020437		958	ILP1 "IAP-like protein 1" [Ara	0.944	0.946	0.546	2.7e-257
TAIR\|locus:2028386		594	AT1G48950 [Arabidopsis thalian	0.331	0.535	0.385	1.2e-59
DICTYBASE\|DDB_G0284355		647	DDB_G0284355 "Nuclear-interact	0.222	0.330	0.258	2.7e-18
UNIPROTKB\|C9J0I9		459	ZC3HC1 "Nuclear-interacting pa	0.278	0.581	0.243	3.1e-11
RGD\|1561099		502	Zc3hc1 "zinc finger, C3HC-type	0.215	0.412	0.256	3.3e-11
ZFIN\|ZDB-GENE-061013-94		492	zc3hc1 "zinc finger, C3HC-type	0.214	0.418	0.275	4.1e-11
MGI\|MGI:1916023		501	Zc3hc1 "zinc finger, C3HC type	0.215	0.413	0.248	4.8e-10
UNIPROTKB\|J9JHF9		502	ZC3HC1 "Uncharacterized protei	0.215	0.412	0.253	6.5e-10
UNIPROTKB\|J9P591		502	J9P591 "Uncharacterized protei	0.215	0.412	0.253	6.5e-10
UNIPROTKB\|J9PB87		509	J9PB87 "Uncharacterized protei	0.215	0.406	0.253	6.8e-10

TAIR\|locus:2020437 ILP1 "IAP-like protein 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2443 (865.0 bits), Expect = 2.7e-257, Sum P(2) = 2.7e-257
 Identities = 503/920 (54%), Positives = 615/920 (66%)

Query:    45 KAASVSCVGSQPPRTSLSTSA---GGSILGSSRPSCRPWERGDLLRRLATFKPSNWFGKP 101
             + A+ S  G+  P   ++  +    G  L  S  SCR W+RGDLLRRLATFKPSNW GKP
Sbjct:    46 QTAAASSAGASSPAVLVNAGSVDWTGHGLALSVRSCRTWDRGDLLRRLATFKPSNWLGKP 105

Query:   102 KLASSLACAQRGWMNIDVDRIACESCAACLSFVSVP--NWTPAEVEDAGQAFSKQLDDGH 159
             K ASSLACAQ+GW+++D+D++ CE C + L + S P  +  P E +  G+ FSKQLDD H
Sbjct:   106 KTASSLACAQKGWVSVDLDKLQCEYCGSILQY-SPPQDSLNPPEADTTGEKFSKQLDDAH 164

Query:   160 NINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGLLQFQSLPIIATCAIEHMWVSRGP 219
               +CPW G SC ESLVQFPPTP SALIGGYKDRCDGLLQF SLPI++  AI+ M  SR P
Sbjct:   165 ESSCPWVGKSCSESLVQFPPTPPSALIGGYKDRCDGLLQFYSLPIVSPSAIDQMRASRRP 224

Query:   220 QIDRLLSQSQNLIVGEVDMKPELENSRDGAFYLYSRAQKLISLCGWEPRWLPNVQDCEEH 279
             QIDRLL+ + + +   +D     E  ++ AF  YSRAQKLISLCGWEPRWLPN+QDCEEH
Sbjct:   225 QIDRLLAHANDDLSFRMDNISAAETYKEEAFSNYSRAQKLISLCGWEPRWLPNIQDCEEH 284

Query:   280 SAQSARDGCSFGPTEAQVQLTKDPGPSKNAISASAKRDTGKNKMFAVESRPEYRSPLLDC 339
             SAQSAR+GC  GP   Q +L +DPGPS+   SAS+++ +G  ++   E + E R PLLDC
Sbjct:   285 SAQSARNGCPSGPARNQSRL-QDPGPSRKQFSASSRKASGNYEVLGPEYKSESRLPLLDC 343

Query:   340 SLCGATVRILDFLTVPRPARFAPNNIDIPDTSKKMGMTRGVSAASGISGWVAADDPEKEQ 399
             SLCG TVRI DF+T  RP  FA  N ++P+TSKKMG+TRG SA SGI+GW A +   ++Q
Sbjct:   344 SLCGVTVRICDFMTTSRPVPFAAINANLPETSKKMGVTRGTSATSGINGWFANEGMGQQQ 403

Query:   400 TEDRDEVATTDEGKLQQNTEFDLNLTIGGGLPFTQAGRTAISENVHDADMGRDLMIGQPA 459
              ED DE  T+ + +L  N          G     Q   +   +N   +D G++++  QP+
Sbjct:   404 NEDVDEAETSVKRRLVSNVGLSFYQNAAGASSSAQLNMSVTRDNYQFSDRGKEVLWRQPS 463

Query:   460 GSEVGDRAASYESRGPSSRKRSLEIGGSSEDRPNLRMQQADSVEGTVIDRDGDEVTDSRQ 519
             GSEVGDRAASYESRGPS+RKRSL+ GGS+ DRP LR+Q+ADSVEGTV+DRDGDEV D   
Sbjct:   464 GSEVGDRAASYESRGPSTRKRSLDDGGSTVDRPYLRIQRADSVEGTVVDRDGDEVNDD-- 521

Query:   520 YSAGPSKRARELDIFDSNCSPYLRDSSGAGPSQSVGLEIHADGNRGSLFRQGSEQVIGVV 579
              SAGPSKR R  D  ++    Y RD S  GPS S+  E   + NR   F +G+EQV+   
Sbjct:   522 -SAGPSKRTRGSDAHEAYPFLYGRDLSVGGPSHSLDAENEREVNRSDPFSEGNEQVMAFP 580

Query:   580 STRDSTRASSVIAMDTVCHSADDDSMESVENSPGGVDDVNFPSSSAYGFFDMNETSELNN 639
               RDSTRASSVIAMDT+CHSA+DDSMESVEN PG  DD+N+PS +     D N+ SELN 
Sbjct:   581 GARDSTRASSVIAMDTICHSANDDSMESVENHPGDFDDINYPSVATAQSADFNDPSELNF 640

Query:   640 SNQAQQSIYSRRATEVVPGEMGISSTNNDGEEIFNAETVTAQARDXXXXXXXXXXXXMCA 699
             SNQAQQS   + A      E GISS N DGEE+ N ETVTAQ RD            M A
Sbjct:   641 SNQAQQSACFQPAPVRFNAEQGISSIN-DGEEVLNTETVTAQGRDGPSLGVSGGSVGMGA 699

Query:   700 SHEAEIHGADVSVHRADSVVGDVEPRIEDAENQGQTGESAPDPGSMDEIVPDEVNREDPH 759
             SHEAEIHGADVSVHR DSVVGD+EP  E  EN GQ+GE APD G  D+ VP E++RE   
Sbjct:   700 SHEAEIHGADVSVHRGDSVVGDMEPVAEVIENLGQSGEFAPDQGLTDDFVPAEMDREGRL 759

Query:   760 GDSQEMLSRSVGRADSGSKIDGSAKAESVESGEKVSQSCKIAQDTSAHPSLSCNANIYSG 819
             GDSQ+ +S+SV RADSGSKI  S KAESVESGEK+S    +  D S HPSLSCNA + SG
Sbjct:   760 GDSQDRVSQSVVRADSGSKIVDSLKAESVESGEKMSNINVLINDDSVHPSLSCNAIVCSG 819

Query:   820 YNTTKNEVTKTGKSSSTNNCPYPESEYAVANGIGPPKGESNYEEATEFDPIAHHNQFCPW 879
             Y  +K EVT+T +S        P S Y  AN  GP  G+SN ++  EFDPI +HN +CPW
Sbjct:   820 YEASKEEVTQTWESPLNAGFALPGSSYT-ANDQGPQNGDSN-DDIVEFDPIKYHNCYCPW 877

Query:   880 XXXXXXXXXXXXXXXXXXXDAIALCGWQLTLDALDTLRSLGHIPIQTVQSESAASLYKDD 939
                                 A A+CGWQLTLDALD+ +SL +   QT++SESAASL KDD
Sbjct:   878 VNENVAAAGCSSNSSGSSGFAEAVCGWQLTLDALDSFQSLENPQNQTMESESAASLCKDD 937

Query:   940 HQTPGRKLLRRHSMSKSHGQ 959
             H+TP +KLL+RHS   SHG+
Sbjct:   938 HRTPSQKLLKRHSFISSHGK 957

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR\|locus:2028386 AT1G48950 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0284355 DDB_G0284355 "Nuclear-interacting partner of ALK" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|C9J0I9 ZC3HC1 "Nuclear-interacting partner of ALK" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1561099 Zc3hc1 "zinc finger, C3HC-type containing 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-061013-94 zc3hc1 "zinc finger, C3HC-type containing 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1916023 Zc3hc1 "zinc finger, C3HC type 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|J9JHF9 ZC3HC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P591 J9P591 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9PB87 J9PB87 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028343001	SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (947 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036925001	SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (873 aa)	•	0.405
	GSVIVG00006890001	SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (470 aa)	•	0.400

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		960
pfam07967		132	pfam07967, zf-C3HC, C3HC zinc finger-like	7e-48
pfam08600		91	pfam08600, Rsm1, Rsm1-like	4e-04

>gnl\|CDD\|219670 pfam07967, zf-C3HC, C3HC zinc finger-like	Back alignment and domain information

 Score =  166 bits (421), Expect = 7e-48
 Identities = 56/130 (43%), Positives = 70/130 (53%), Gaps = 3/130 (2%)

Query: 79  PWERGDLLRRLATFKPSNWFGKPKLASSLACAQRGWMNIDVDRIACESCAA--CLSFVSV 136
           PW+R D LRRL TFK   WFGKP   S L CA+RGW+ +D D + CESC A  C    ++
Sbjct: 1   PWDREDFLRRLKTFKALTWFGKPSALSPLECARRGWVCVDKDMLKCESCGARLCYKLPNI 60

Query: 137 PNWTPAEVEDAGQAFSKQLDDGHNINCPWRGNSCPESLVQFPPTPQSALIGGYKDRCDGL 196
                +  +   + +SK L  GH  NCPWR N CPE L   P      L+  Y+ R D L
Sbjct: 61  VKLDESVYKKLVEEYSKLLVTGHEENCPWRNNGCPEILELLPLANPQVLLSDYRKRYDSL 120

Query: 197 LQ-FQSLPII 205
           LQ    LP +
Sbjct: 121 LQRLDQLPSL 130

This zinc-finger like domain is distributed throughout the eukaryotic kingdom in NIPA (Nuclear interacting partner of ALK) proteins. NIPA is implicate to perform some sort of antiapoptotic role in nucleophosmin-anaplastic lymphoma kinase (ALK) mediated signaling events. The domain is often repeated, with the second domain usually containing a large insert (approximately 90 residues) after the first three cysteine residues. The Schizosaccharomyces pombe the protein containing this domain is involved in mRNA export from the nucleus. Length = 132

>gnl\|CDD\|219926 pfam08600, Rsm1, Rsm1-like	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		960
KOG4765		419	consensus Uncharacterized conserved protein [Funct	100.0
PF07967		133	zf-C3HC: C3HC zinc finger-like ; InterPro: IPR0129	100.0
PF08600		91	Rsm1: Rsm1-like; InterPro: IPR013909 This entry co	98.55
KOG4765		419	consensus Uncharacterized conserved protein [Funct	98.48
PF08600		91	Rsm1: Rsm1-like; InterPro: IPR013909 This entry co	97.43
smart00238		71	BIR Baculoviral inhibition of apoptosis protein re	95.81
PF00653		70	BIR: Inhibitor of Apoptosis domain; InterPro: IPR0	95.79
cd00022		69	BIR Baculoviral inhibition of apoptosis protein re	95.55
KOG1101		147	consensus Apoptosis inhibitor IAP1 and related BIR	92.84

>KOG4765 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=1.9e-66  Score=557.60  Aligned_cols=400  Identities=32%  Similarity=0.433  Sum_probs=331.9

Q ss_pred             CCCCcccCCCCCCCCCCCccccccccCCCCCCccccccccCCCCCCcccccCCCCCccCCCCCCCCCCChHHHHHHhhcC
Q 046458           13 DPTPAASSAGASSPAAPANVGSIDWSGHGHNSKAASVSCVGSQPPRTSLSTSAGGSILGSSRPSCRPWERGDLLRRLATF   92 (960)
Q Consensus        13 ~pt~~assag~ssp~~~~~~~~~~~~~~~~~~~~~s~~~v~~~~~~~s~st~~~g~~~~ss~p~yrPwDRedFLrRLaTF   92 (960)
                      +-|-.|..|+.+.+...++.++-||.|.++                            ..+...|+|||||+||+||+||
T Consensus        10 p~~~~a~~~~ds~~~i~t~~~Ss~~~~~~~----------------------------k~s~~l~k~wdred~lrRl~Tf   61 (419)
T KOG4765|consen   10 PTTMEALEALDSLDEILTYARSSDILGKSL----------------------------KASKSLCKPWDREDLLRRLATF   61 (419)
T ss_pred             CCcHHHHhhhcchhhhhhccccccccCccc----------------------------cccccccCcccHHHHHHHHHhc
Confidence            335567889999999998888888866543                            3466789999999999999999


Q ss_pred             CCCCccCCCCCCCHHHHHhhCCeeccCCeeEeccCCcEEEeecCC-CCCHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC
Q 046458           93 KPSNWFGKPKLASSLACAQRGWMNIDVDRIACESCAACLSFVSVP-NWTPAEVEDAGQAFSKQLDDGHNINCPWRGNSCP  171 (960)
Q Consensus        93 k~snWf~KP~~LSPL~CArrGWvCvdkD~LkCesCga~Lvvkl~p-sld~~e~e~lvekys~qL~tgHk~~CPWR~~~CP  171 (960)
                      |..+||+||..|+|+.||+|||+|+++|+|+|+.|+++|++.+++ .|++++|++++++|+++|+++|+++||||.+.||
T Consensus        62 ks~tWygkp~~iS~lnCA~~GWv~vd~D~lkCe~C~a~L~~s~pq~s~s~d~~n~~~ek~~kkLetaHe~~C~W~~~s~p  141 (419)
T KOG4765|consen   62 KSRTWYGKPFEISPLNCAKYGWVCVDCDMLKCESCGAFLCASLPQQSFSFDRYNQRCEKFKKKLETAHEKFCPWRDSSCP  141 (419)
T ss_pred             cCchhccCCcccchHHHhhcCeeeccCCeeehhhhhhHHhccCCccccChHHHHhHHHHHHHHHHHHHhhcCcCCCCCCc
Confidence            999999999999999999999999999999999999999999988 8999999999999999999999999999999999


Q ss_pred             CcccccCCCChHHHHHHHHHHHHhhhcCCCCCCcccccccccccCCCcc-HHHHHhhccccccCccCCCccc---ccCcC
Q 046458          172 ESLVQFPPTPQSALIGGYKDRCDGLLQFQSLPIIATCAIEHMWVSRGPQ-IDRLLSQSQNLIVGEVDMKPEL---ENSRD  247 (960)
Q Consensus       172 dSIyrLPlt~psaLI~~fkeR~dsLl~l~~LP~is~saienM~l~e~~~-Id~~LSqLp~ll~~el~~~~~~---e~~~~  247 (960)
                      ++|++||++++.+||..|++|++.|+++..||.++|++|+.||+.+.++ |.++|..      +..++++++   .....
T Consensus       142 e~i~e~p~~~p~~lV~r~~dr~~~ll~~l~Lp~~~Ps~i~~mrle~v~e~l~~~la~------~~~d~~~der~t~~~g~  215 (419)
T KOG4765|consen  142 ERIVELPLDEPADLVGRRLDRSSKLLQLLDLPAHSPSAIELMRLERVPEQLIRVLAE------AEDDHRTDERKTTIKGG  215 (419)
T ss_pred             hhhccCCCccHHHHHHHHHhhhhhhhhhccCCCCCHHHhhhhhhhcchHhhhhhhhh------hcccccchhhccccccc
Confidence            9999999999999999999999999999999999999999999988655 5555543      233333331   11111


Q ss_pred             ccchhhhHHHHHHHHhCCCCCCCCCCccccccccccccCCCCCCCccccccccCCCCCCccccccccccccCCCcccccc
Q 046458          248 GAFYLYSRAQKLISLCGWEPRWLPNVQDCEEHSAQSARDGCSFGPTEAQVQLTKDPGPSKNAISASAKRDTGKNKMFAVE  327 (960)
Q Consensus       248 ~a~~~~~raa~iLALcGWe~R~LPn~~dc~~~S~~sa~n~~~~~Pa~~~~~l~~~~~~s~~s~s~S~~~~~~~~~~~~~e  327 (960)
                      .+...+++++ ||+||||+         |+++.-                   .                     ++   
T Consensus       216 s~~~~~~aaq-lislCGWe---------c~~~le-------------------~---------------------~p---  242 (419)
T KOG4765|consen  216 SAIQLHVAAQ-LISLCGWE---------CSSSLE-------------------S---------------------MP---  242 (419)
T ss_pred             hHHHHHHHHH-HHhhcccc---------cccccc-------------------c---------------------Cc---
Confidence            2233566666 99999999         777650                   0                     11   


Q ss_pred             CCCCCCCCceecccccCccccccceecCCCccccCCCCCCCccccccccccccccccCccccccCCCccccccccccccc
Q 046458          328 SRPEYRSPLLDCSLCGATVRILDFLTVPRPARFAPNNIDIPDTSKKMGMTRGVSAASGISGWVAADDPEKEQTEDRDEVA  407 (960)
Q Consensus       328 s~~d~~S~vLdCslCGA~VgLW~F~tv~RP~~ls~~~i~~p~~~kk~~ltrgiSaaSgin~~~~~~~~e~eq~e~rdea~  407 (960)
                            -.||||++||++||||+|+|++||+.++..+.                ++|++|+|..-.|+            
T Consensus       243 ------i~ll~Cs~C~r~vglw~f~t~~qp~~~s~~n~----------------~ts~~~~~~p~~g~------------  288 (419)
T KOG4765|consen  243 ------ISLLDCSLCGRRVGLWGFQTEGQPIESSMTNL----------------DTSFGNTKSPITGL------------  288 (419)
T ss_pred             ------cceehhhhccceeeeccccccCCcchhhhhcc----------------ccccccccCCCCcc------------
Confidence                  13999999999999999999999999885321                77888888774333            


Q ss_pred             ccccCccccccccceeEEecCCCCCcccCcccccccccccCCCccccccCCCCCCcCCccceeccCCCccccccccCCCC
Q 046458          408 TTDEGKLQQNTEFDLNLTIGGGLPFTQAGRTAISENVHDADMGRDLMIGQPAGSEVGDRAASYESRGPSSRKRSLEIGGS  487 (960)
Q Consensus       408 ~s~~~ks~~n~~~dlnlTiAGGpppT~~n~~~~~~~~~~~~~g~~l~i~qpsgSevgd~aasyesrgPs~rkrs~~~g~s  487 (960)
                             +.-.+.+|-|+++++++.|.+|+.++.--   ++.|+.|.-.+                              
T Consensus       289 -------lq~q~~~~~~~e~s~~rr~~~n~~~s~~t---p~~~~~l~s~~------------------------------  328 (419)
T KOG4765|consen  289 -------LQGQPESLPLVEESIPRRTMTNSQDSIYT---PGSGQLLQSLR------------------------------  328 (419)
T ss_pred             -------cccccccchhhhhccchhhhhhccceeec---chhhhhhhccc------------------------------
Confidence                   22335678889999999999998877654   34555443221                              


Q ss_pred             CCCCccccccccccccceeecCCCccccccccccCCCccccccccccccCCCCCCCCCCCCCCCcccccccccCCCCCcc
Q 046458          488 SEDRPNLRMQQADSVEGTVIDRDGDEVTDSRQYSAGPSKRARELDIFDSNCSPYLRDSSGAGPSQSVGLEIHADGNRGSL  567 (960)
Q Consensus       488 ~~d~p~~~~q~ads~egtvid~d~~ev~d~~q~sa~~sKr~r~~~~~~~~~~~~~~~~sg~gps~~~~~~~~~d~n~~~~  567 (960)
                                                         +++||.|..      .+.|+|+.+-.||+++..-.-+..+|+.++
T Consensus       329 -----------------------------------~~s~rs~~~------p~~~~rd~~~~~~~ts~k~~~e~~~~~~d~  367 (419)
T KOG4765|consen  329 -----------------------------------DTSSRSFFD------PTSQHRDWCPWVNITSGKESRENGGTEPDA  367 (419)
T ss_pred             -----------------------------------CccccccCC------ccccccccccccccccchhhhcCCCCCCCC
Confidence                                               678998865      567899999999999999999999999888


Q ss_pred             cccCCcccccccccccccCccceeeecccccCCCCCcccccccCCCCCCCCccCCCc
Q 046458          568 FRQGSEQVIGVVSTRDSTRASSVIAMDTVCHSADDDSMESVENSPGGVDDVNFPSSS  624 (960)
Q Consensus       568 ~~~~~~~~~~~~~~rds~~assv~amdt~~h~~~e~SmeSVe~~p~d~~~v~~pss~  624 (960)
                      |..      ..|..|+++  |+|+||++.||+++.|||++||++|.+++  ||+++.
T Consensus       368 f~p------a~pgwr~~l--s~l~ahk~scqpa~~dsm~~ve~~~~~fr--n~~~~~  414 (419)
T KOG4765|consen  368 FAP------AEPGWRAVL--SILLAHKQSCQPAETDSMSLVEKSRKVFR--NFRQWE  414 (419)
T ss_pred             CCC------CCCcHHHHH--HHHHHhhccCCCCCccchhhhhcchhhhh--hccccc
Confidence            877      667889998  99999999999999999999999999999  777754

>PF07967 zf-C3HC: C3HC zinc finger-like ; InterPro: IPR012935 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger	Back alignment and domain information

>KOG4765 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger	Back alignment and domain information

>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat	Back alignment and domain information

>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively	Back alignment and domain information

>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins	Back alignment and domain information

>KOG1101 consensus Apoptosis inhibitor IAP1 and related BIR domain proteins [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		960
3m1d_A		85	Baculoviral IAP repeat-containing protein 2; BIR,	96.46
3hl5_A		95	Baculoviral IAP repeat-containing protein 4; BIR,	96.03
2poi_A		94	Baculoviral IAP repeat-containing protein 4; zinc	95.78
3siq_A		136	Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase;	95.73
2qfa_A		142	Baculoviral IAP repeat-containing protein 5; three	95.63
2qra_D		111	XIAP, baculoviral IAP repeat-containing protein 4,	95.55
3d9t_A		97	Baculoviral IAP repeat-containing protein 2; zinc	95.15
1g73_C		121	Inhibitors of apoptosis-like protein ILP; helix bu	95.07
1se0_A		116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	94.97
3mup_A		122	Baculoviral IAP repeat-containing protein 2; zinc-	94.74
2i3h_A		133	Baculoviral IAP repeat-containing protein 7; zinc	94.73
1i4o_C		141	X-linked IAP, baculoviral IAP repeat-containing pr	93.95
1jd5_A		124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	93.85
2vm5_A		106	Baculoviral IAP repeat-containing protein 1; apopt	93.81
3t6p_A		345	Baculoviral IAP repeat-containing protein 2; ring,	88.1

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D	Back alignment and structure

Probab=96.46  E-value=0.0036  Score=56.12  Aligned_cols=55  Identities=20%  Similarity=0.339  Sum_probs=42.9

Q ss_pred             CCCCCCChHHHHHHhhcCCCCCccCCCCCCCHHHHHhhCCeecc-CCeeEeccCCcEEE
Q 046458           75 PSCRPWERGDLLRRLATFKPSNWFGKPKLASSLACAQRGWMNID-VDRIACESCAACLS  132 (960)
Q Consensus        75 p~yrPwDRedFLrRLaTFk~snWf~KP~~LSPL~CArrGWvCvd-kD~LkCesCga~Lv  132 (960)
                      |.-.+.+......||+||+  +|-. ...++|-+.|+.||...+ .|+++|-.|+..|.
T Consensus         2 ~~~~~~~~~~e~~Rl~TF~--~WP~-~~~~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~   57 (85)
T 3m1d_A            2 PLGSKYDFSCELYRMSTYS--TFPA-GVPVSERSLARAGFYYTGVNDKVKCFCCGLMLD   57 (85)
T ss_dssp             -----CCHHHHHHHHHGGG--GCCT-TCSSCHHHHHHTTEEECSSTTCEEETTTCCEEC
T ss_pred             CcccHHHhHhHHHHHHHHh--cCCC-CCcCCHHHHHHCCCeEeCCCCEEEeCCcCCEec
Confidence            4556778888999999998  8832 235899999999999987 59999999999875

PyMOL of 3m1d

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A	Back alignment and structure

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B	Back alignment and structure

>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}	Back alignment and structure

>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...	Back alignment and structure

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}	Back alignment and structure

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A	Back alignment and structure

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A	Back alignment and structure

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E	Back alignment and structure

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*	Back alignment and structure

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*	Back alignment and structure

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A	Back alignment and structure

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A	Back alignment and structure

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}	Back alignment and structure

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		960
d2vsla1		96	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	96.32
d2i3ha1		90	BIR-containing protein 7 (ML-IAP, livin) {Human (H	96.26
d3d9ta1		87	2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}	95.73
d1se0a_		97	BIR domains of DIAP1 {Fruit fly (Drosophila melano	95.61
d1jd5a_		105	BIR domains of DIAP1 {Fruit fly (Drosophila melano	95.52
d1i3oe_		111	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	95.48
d2qfaa1		137	Anti-apoptotic protein survivin {Human (Homo sapie	94.8

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0016  Score=57.67  Aligned_cols=47  Identities=23%  Similarity=0.484  Sum_probs=39.9

Q ss_pred             ChHHHHHHhhcCCCCCccCCCCCCCHHHHHhhCCeecc-CCeeEeccCCcEEE
Q 046458           81 ERGDLLRRLATFKPSNWFGKPKLASSLACAQRGWMNID-VDRIACESCAACLS  132 (960)
Q Consensus        81 DRedFLrRLaTFk~snWf~KP~~LSPL~CArrGWvCvd-kD~LkCesCga~Lv  132 (960)
                      +...+-+||+||+  +|-   ..+++-..|+.||..++ .|+++|-.|+..|.
T Consensus        12 ~m~~~~~Rl~TF~--~Wp---~~~~~~~LA~aGFyytg~~D~v~Cf~C~~~l~   59 (96)
T d2vsla1          12 SMADYEARIFTFG--TWI---YSVNKEQLARAGFYALGEGDKVKCFHCGGGLT   59 (96)
T ss_dssp             GGCSHHHHHHTTT--TCC---SSSCHHHHHHTTEEECSSTTCEEETTTCCEEE
T ss_pred             cccCHHHHHHHHc--cCC---CCCCHHHHHHhCCEEcCCCCEEEeccCCCEeC
Confidence            3456678999998  894   34899999999999986 78999999999876

PyMOL of d2vsla1

>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure