Citrus Sinensis ID: 046476

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MENKRRDTVPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIVSFTNSSFSQQHFLTIEHQSDEASHLLTVPSDFKLHRVTQLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKIPPVTEQDVVKFLDLKRARVSATYVASLPAE
ccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccEEEEEEEcccccEEEEcccccccccEEEEEEccEEEEEEEcccEEEEEEcccccEEEcccccccccccccccccccccEEEEEEEEEEcccccEEEEEEEcccccccccccEEcccccccEEEEEEcccccEEEccccccccccccccEEEccEEEEEEEcccccccEEEEEEccccEEEEEccccccccccEEEEEccEEEEEEEEccccccEEEEEEEccccccccccEEEEEEEEccccccccccEEEEEcccccEEEEEccccccEEEEEEEccccEEEEEEEcccccccEEEEcccEEEEEEccEEEccccc
ccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHEEEEEcccccccccEEEEEEccccccEEEEcccccccccccccccEEEEEEcccccEEEEEccccccEEEcccccccccccccccccccccEEEEEEEEEccccccEEEEEEEEccccccccEEEccccccccEEEEEEEccccEEEEEccccccccccccEEEcEEEEEEEEEcccccEEEEEEEEccEEEEEEEcccccccccEEEEEccEEEEEEEEccccccEEEEEEEEccccccEEEEEEEEEEEccccccccEEEEEEEccccEEEEEcccccccEEEEEEccccccEEEEEEEcccccHcEEcccccEEEEEcccccccccc
menkrrdtvphdVAMDVLKILPEKARMRFKCvsktwyssikgtiLPLIVSftnssfsqqhfltiehqsdeashlltvpsdfklhRVTQLINGFICFYNIVGFEILMRNVVTQEiidlpkstfvvsdddedfsgpmisyfreyflgfdpssrdykvlnisnkhttnssSYAWMIdnhgtpeceiftlgttswrkidappsrihfrrqglcangfihwiitnprktkpvlavfdvkeekfdivklpdevrkHHDLIQAeeklgvldcddfrsknKIRVWILKDygrgggevwIRRDYvfrfdtimfrppipvsnsnngeILLTEYKSSLVSRVFIYDLktqerraikippvteqdVVKFLDLKRARVSATYVASLPAE
menkrrdtvphdvamdvlkilpekarMRFKCVSKTWYSSIKGTILPLIVSFTNSSFSQQHFLTIEHQSDEASHLLTVPSDFKLHRVTQLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEkfdivklpdevrkhhdliqaeeklgvldcddfrskNKIRVWilkdygrgggevwIRRDYVFRFDTIMfrppipvsnsnnGEILLTEYKSSLVSRVFIYDLKtqerraikippvteqdvvkfLDLKRARVSATYVASLPAE
MENKRRDTVPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIVSFTNSSFSQQHFLTIEHQSDEASHLLTVPSDFKLHRVTQLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKIPPVTEQDVVKFLDLKRARVSATYVASLPAE
************VAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIVSFTNSSFSQQHFLTIEHQSDEASHLLTVPSDFKLHRVTQLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKIPPVTEQDVVKFLDLKRARVSATYV******
*****RD***HDVAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIVSFTNSSFSQQHFLTIEHQSDEASHLLTVPSDFKLHRVTQLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKIPPVTEQDVVKFLDLKRARVSATYVASLPA*
********VPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIVSFTNSSFSQQHFLTIEHQSDEASHLLTVPSDFKLHRVTQLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKIPPVTEQDVVKFLDLKRARVSATYVASLPAE
*****RDTVPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIVSFTNSSFSQQHFLTIEHQSDEASHLLTVPSDFKLHRVTQLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKIPPVTEQDVVKFLDLKRARVSATYVASL***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENKRRDTVPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIVSFTNSSFSQQHFLTIEHQSDEASHLLTVPSDFKLHRVTQLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKIPPVTEQDVVKFLDLKRARVSATYVASLPAE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
Q9FGS3357 Putative F-box protein At yes no 0.619 0.652 0.292 2e-17
Q9FZF8389 Putative F-box protein At no no 0.880 0.850 0.240 6e-17
O49565417 Putative F-box protein At no no 0.827 0.745 0.260 1e-16
Q9LQL5302 Putative F-box protein At no no 0.622 0.774 0.254 2e-16
O49420431 F-box/kelch-repeat protei no no 0.869 0.758 0.226 8e-15
Q9SS35389 Putative F-box protein At no no 0.829 0.802 0.248 1e-14
O49421411 F-box protein At4g19940 O no no 0.832 0.761 0.236 9e-14
P0C2G2400 Putative F-box protein At no no 0.781 0.735 0.261 9e-14
Q9FIH4395 Putative F-box protein At no no 0.832 0.792 0.25 2e-13
Q9FJJ4420 F-box protein At5g62510 O no no 0.816 0.730 0.256 3e-13
>sp|Q9FGS3|FB287_ARATH Putative F-box protein At5g50220 OS=Arabidopsis thaliana GN=At5g50220 PE=4 SV=1 Back     alignment and function desciption
 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 124/277 (44%), Gaps = 44/277 (15%)

Query: 9   VPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIVSFTNSSFSQ-QHFLTIEHQ 67
           +P D+ +++LK LP K+ ++F+CVSK W SSI G+    I S    S SQ    + I   
Sbjct: 33  IPIDLMVEILKKLPAKSLIKFQCVSKQW-SSIIGSSRDFIDSIVTRSLSQPSRDILISFS 91

Query: 68  SDEASHLLTVPSDFKLHRVTQLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDD 127
           +   + L  + S F L  +  L        N    E  + N  T++ + LP++T      
Sbjct: 92  TTLTNSLKQISSSFPLRTLDILTK------NQSYTEAAIYNPTTRQSLSLPETT------ 139

Query: 128 DEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPECEIFTLG 187
               +G   S+    FLG+DP    YKV+                +DN+    C +FTLG
Sbjct: 140 ----AGH--SHVSTSFLGYDPFKNQYKVI---------------CLDNYKRRCCHVFTLG 178

Query: 188 TT--SWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPD 245
                WRKI             +C  G I++       T  VL  FDV  EKFD V+ P 
Sbjct: 179 DAIRKWRKIQYNFGLYFPLLPPVCIKGTIYYQAKQYGSTY-VLLCFDVISEKFDQVEAPK 237

Query: 246 EVRKH-HDLIQAEEKLGVLDCDDFRSKNKIRVWILKD 281
            +  H + LI  + KLG + C     +N++ +W++K+
Sbjct: 238 TMMDHRYTLINYQGKLGFMCC-----QNRVEIWVMKN 269

Arabidopsis thaliana (taxid: 3702)
>sp|Q9FZF8|FB44_ARATH Putative F-box protein At1g47790 OS=Arabidopsis thaliana GN=At1g47790 PE=4 SV=1 Back     alignment and function description
>sp|O49565|FB239_ARATH Putative F-box protein At4g21240 OS=Arabidopsis thaliana GN=At4g21240 PE=4 SV=1 Back     alignment and function description
>sp|Q9LQL5|FB30_ARATH Putative F-box protein At1g32420 OS=Arabidopsis thaliana GN=At1g32420 PE=4 SV=1 Back     alignment and function description
>sp|O49420|FBK86_ARATH F-box/kelch-repeat protein At4g19930 OS=Arabidopsis thaliana GN=At4g19930 PE=1 SV=1 Back     alignment and function description
>sp|Q9SS35|FB137_ARATH Putative F-box protein At3g10240 OS=Arabidopsis thaliana GN=At3g10240 PE=4 SV=1 Back     alignment and function description
>sp|O49421|FB238_ARATH F-box protein At4g19940 OS=Arabidopsis thaliana GN=At4g19940 PE=4 SV=1 Back     alignment and function description
>sp|P0C2G2|FB21_ARATH Putative F-box protein At1g30920 OS=Arabidopsis thaliana GN=At1g30920 PE=4 SV=1 Back     alignment and function description
>sp|Q9FIH4|FB280_ARATH Putative F-box protein At5g42430 OS=Arabidopsis thaliana GN=At5g42430 PE=4 SV=1 Back     alignment and function description
>sp|Q9FJJ4|FB298_ARATH F-box protein At5g62510 OS=Arabidopsis thaliana GN=At5g62510 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
224101993433 predicted protein [Populus trichocarpa] 0.829 0.720 0.290 3e-26
224056751412 predicted protein [Populus trichocarpa] 0.789 0.720 0.264 2e-19
147770773289 hypothetical protein VITISV_008877 [Viti 0.632 0.823 0.282 5e-16
15240635357 putative F-box protein [Arabidopsis thal 0.619 0.652 0.292 1e-15
224053103408 predicted protein [Populus trichocarpa] 0.837 0.772 0.267 4e-15
15220964389 putative F-box protein [Arabidopsis thal 0.880 0.850 0.240 4e-15
297816514420 hypothetical protein ARALYDRAFT_906605 [ 0.813 0.728 0.262 4e-15
15233576417 putative F-box protein [Arabidopsis thal 0.827 0.745 0.260 7e-15
15223197302 putative F-box protein [Arabidopsis thal 0.622 0.774 0.254 1e-14
297846218297 F-box family protein [Arabidopsis lyrata 0.638 0.808 0.273 2e-14
>gi|224101993|ref|XP_002312504.1| predicted protein [Populus trichocarpa] gi|222852324|gb|EEE89871.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 116/399 (29%), Positives = 185/399 (46%), Gaps = 87/399 (21%)

Query: 3   NKRRDTVPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIVSFTNSSFSQQHFL 62
           N  R  +P DV +D+L  LP K+ +RF+CVS+TW             SFT+  F    F 
Sbjct: 20  NINRRHIPDDVILDILTRLPAKSVVRFRCVSRTW------------CSFTHDPF----FA 63

Query: 63  TIEH-----QSDEASHLLTVPS-------------------------DFKLHRVTQLING 92
           ++ H     + + ++ LL+ P                          D +   ++++I G
Sbjct: 64  SLHHARSLTRDNGSALLLSYPDPSSSSTSFSFFERKQGFRNLQISHVDQQYTHLSEIIRG 123

Query: 93  FICFYNIVGFEILMRNVVTQEIIDLPKSTFVV--SDDDEDFSGPMISYFREYFLGFDPSS 150
            +C        + + N+ TQE I LP+ST +   SD   DF    I Y   Y  GF+ S+
Sbjct: 124 ILCINYRRSHRVDICNITTQETITLPRSTNIPIRSDAGVDFD---IVYEPRYSFGFNSST 180

Query: 151 RDYKVLNISNKHTTNSSSYAWMID-NHG---------TPECEIFTL----GTTSWRKIDA 196
           RDYKVLNI      + + Y   ++ N+G         T E EIFT+    G  SWRKID 
Sbjct: 181 RDYKVLNI-----CSITRYKLQVNPNNGLSTREVSQRTVEFEIFTIGCDRGAGSWRKIDP 235

Query: 197 P---PSRIH-FRRQGLCANGFIHWIITNPRKTKPVLAVFDVKEEKFDIVKLPDEVRKHHD 252
                  +H    + +CA+G IHW   +    + +L  FD+K+EKF I+++P E  + H 
Sbjct: 236 GYPYDQELHGLSCESVCADGVIHW--RHRFFDQEILLAFDLKQEKFQIIQVPKEALEFHL 293

Query: 253 LIQAEEKLGVLD-CDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVF-RFDTIMFRPPIPV 310
           + Q +  L ++       ++NKI +WIL+D      ++W++ + VF    T ++    PV
Sbjct: 294 MKQVKGCLVLMGHVISGYNRNKIVLWILEDR---LNQIWMKENVVFPSHSTCLW----PV 346

Query: 311 SNSNNGEILLTE--YKSSLVSRVFIYDLKTQERRAIKIP 347
            +   G ILL +  Y        +  DL+T+    I++P
Sbjct: 347 GSFKTGLILLAQHGYADPAAWAAYYCDLETKNLCMIQVP 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056751|ref|XP_002299005.1| predicted protein [Populus trichocarpa] gi|222846263|gb|EEE83810.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147770773|emb|CAN60955.1| hypothetical protein VITISV_008877 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15240635|ref|NP_199833.1| putative F-box protein [Arabidopsis thaliana] gi|75262452|sp|Q9FGS3.1|FB287_ARATH RecName: Full=Putative F-box protein At5g50220 gi|9759024|dbj|BAB09393.1| unnamed protein product [Arabidopsis thaliana] gi|332008530|gb|AED95913.1| putative F-box protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224053103|ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15220964|ref|NP_175213.1| putative F-box protein [Arabidopsis thaliana] gi|75263267|sp|Q9FZF8.1|FB44_ARATH RecName: Full=Putative F-box protein At1g47790 gi|9802587|gb|AAF99789.1|AC012463_6 T2E6.11 [Arabidopsis thaliana] gi|332194093|gb|AEE32214.1| putative F-box protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297816514|ref|XP_002876140.1| hypothetical protein ARALYDRAFT_906605 [Arabidopsis lyrata subsp. lyrata] gi|297321978|gb|EFH52399.1| hypothetical protein ARALYDRAFT_906605 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15233576|ref|NP_193856.1| putative F-box protein [Arabidopsis thaliana] gi|75219646|sp|O49565.1|FB239_ARATH RecName: Full=Putative F-box protein At4g21240 gi|2911081|emb|CAA17543.1| putative protein [Arabidopsis thaliana] gi|7268921|emb|CAB79124.1| putative protein [Arabidopsis thaliana] gi|332659031|gb|AEE84431.1| putative F-box protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15223197|ref|NP_174520.1| putative F-box protein [Arabidopsis thaliana] gi|75264179|sp|Q9LQL5.1|FB30_ARATH RecName: Full=Putative F-box protein At1g32420 gi|8920618|gb|AAF81340.1|AC007767_20 Contains similarity to a hypothetical protein F6D8.29 gi|5903056 from Arabidopsis thaliana BAC F6D8 gb|AC008016 [Arabidopsis thaliana] gi|332193364|gb|AEE31485.1| putative F-box protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297846218|ref|XP_002890990.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297336832|gb|EFH67249.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
TAIR|locus:2015756400 AT1G30920 "AT1G30920" [Arabido 0.811 0.762 0.267 5.7e-15
TAIR|locus:2033739302 AT1G32420 "AT1G32420" [Arabido 0.656 0.817 0.272 6.9e-15
TAIR|locus:2202425389 AT1G47790 "AT1G47790" [Arabido 0.550 0.532 0.251 7.2e-15
TAIR|locus:2157757357 AT5G50220 "AT5G50220" [Arabido 0.489 0.515 0.260 1.1e-14
TAIR|locus:2141801426 AT4G38870 "AT4G38870" [Arabido 0.925 0.816 0.247 1.2e-14
TAIR|locus:2119787411 AT4G19940 "AT4G19940" [Arabido 0.861 0.788 0.243 1.4e-14
TAIR|locus:2076309389 AT3G10240 "AT3G10240" [Arabido 0.510 0.493 0.248 1.8e-14
TAIR|locus:2127333417 AT4G21240 "AT4G21240" [Arabido 0.835 0.752 0.257 2.6e-14
TAIR|locus:2162281395 AT5G42430 "AT5G42430" [Arabido 0.832 0.792 0.256 4.8e-14
TAIR|locus:2196964399 AT1G30790 "AT1G30790" [Arabido 0.861 0.812 0.265 1.1e-13
TAIR|locus:2015756 AT1G30920 "AT1G30920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 213 (80.0 bits), Expect = 5.7e-15, P = 5.7e-15
 Identities = 96/359 (26%), Positives = 155/359 (43%)

Query:     7 DTVPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGTILPLIVSFTNSSFSQQHFL-TIE 65
             D++P D+ +D+L  LP K+  R +CVSK W S I+ +    +  F   S S+ H L  +E
Sbjct:     8 DSIPIDLILDILSRLPSKSIARCRCVSKLWESMIRQSYFTEL--FLTRSSSRPHLLIAVE 65

Query:    66 HQSDEASHLLTVPSDFKLHRVTQLINGFICFYNIVGFEILMRN---VVTQEIIDLPKSTF 122
              + +     L  P ++ L + + ++   +   ++  FE             +I  P  T 
Sbjct:    66 QEGEWKFFSLPQPKNY-LGKSSLVVAANL---HLKFFEDKRPQHGCSYASSLIYFPNMTI 121

Query:   123 VVSDDDE------DFSG-------PMISYFRE--Y--FLGFDPSSRDYKVLNISNKHTTN 165
                 DD         +G       P +  F+   Y  FLGFDP  + +KVL I       
Sbjct:   122 RKKGDDHLGVICNPSTGQYGYVILPPLLDFKSVPYGKFLGFDPIDKQFKVL-IP------ 174

Query:   166 SSSYAWMIDNHGTPECEIFTLG--TTSWRKIDAPPSRIHFRRQGLCANGFIHWIIT-NPR 222
                  +  D H T    I TLG  T  WRKI +P   +      +C NG ++++   N  
Sbjct:   175 ----IFDFDKHQTDH-HILTLGAETVGWRKIQSPLRYLPHSNGTICINGILYYLAKINYA 229

Query:   223 KTKPVLAVFDVKEEKFDIVKLPDEVRKHHDLIQAEEKLGVLD---CDDFRSKNKIRVWIL 279
               K VL  FDV+ E F  ++L +       L+  + KLG+++    DD     K+ VW+L
Sbjct:   230 MDKNVLVCFDVRSENFVFLRL-NTYCSSTKLVNYKGKLGMINQEYVDDGGFPLKLSVWVL 288

Query:   280 KDYGRGGGEVWIRRDYVFR----FDTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIY 334
             +D G+   E W    Y  R     D + +   + V  + +GEI+L +   +L     +Y
Sbjct:   289 EDVGK---EEWSTYVYTLRDDNKVDQVKYNLSV-VGVTASGEIVLVKKTQTLKPFYVLY 343
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2033739 AT1G32420 "AT1G32420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202425 AT1G47790 "AT1G47790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157757 AT5G50220 "AT5G50220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141801 AT4G38870 "AT4G38870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119787 AT4G19940 "AT4G19940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076309 AT3G10240 "AT3G10240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127333 AT4G21240 "AT4G21240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162281 AT5G42430 "AT5G42430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196964 AT1G30790 "AT1G30790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 1e-24
pfam08268125 pfam08268, FBA_3, F-box associated domain 2e-10
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score =  100 bits (250), Expect = 1e-24
 Identities = 63/257 (24%), Positives = 105/257 (40%), Gaps = 37/257 (14%)

Query: 90  INGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPS 149
            +G ICF    G  +++ N  T +   LP      S+ + D           YFLG+DP 
Sbjct: 4   CDGLICF--SYGKRLVVWNPSTGQSRWLPTPKSRRSNKESDT----------YFLGYDPI 51

Query: 150 SRDYKVLNISNKHTTNSSSYAWMIDNHGTPECEIFTLGTTSWRKIDAPPSRIHFRRQGLC 209
            + YKVL  S++             N    E +++TLG+ SWR I+  P     + +G+C
Sbjct: 52  EKQYKVLCFSDRSG-----------NRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVC 100

Query: 210 ANGFIHWI-ITNPRKTKPVLAVFDVKEEKFDI-VKLPDEVRKHHD---LIQAEEKLGVLD 264
            NG ++++  T        +  FDV  E+F   + LP       D   LI  + KL VL 
Sbjct: 101 INGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVL- 159

Query: 265 CDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTI--MFRPPIPVSNSNNGEILLTE 322
               +  N   +W+L D    G + W +  +      +  +         ++ GEI+L  
Sbjct: 160 -KQKKDTNNFDLWVLNDA---GKQEWSKL-FTVPIPPLPDLVDDNFLSGFTDKGEIVLCC 214

Query: 323 YKSSLVSRVFIYDLKTQ 339
              +    +F Y++   
Sbjct: 215 EDENPFY-IFYYNVGEN 230

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|219769 pfam08268, FBA_3, F-box associated domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.72
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.69
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.37
PHA02713557 hypothetical protein; Provisional 99.0
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.82
PHA03098534 kelch-like protein; Provisional 98.79
PHA02790480 Kelch-like protein; Provisional 98.78
PLN02153341 epithiospecifier protein 98.74
PHA02713557 hypothetical protein; Provisional 98.73
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.69
PLN02193470 nitrile-specifier protein 98.67
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.65
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.64
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.63
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.62
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.62
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.43
PHA03098534 kelch-like protein; Provisional 98.3
PLN02193470 nitrile-specifier protein 98.27
PLN02153341 epithiospecifier protein 98.26
PHA02790480 Kelch-like protein; Provisional 98.1
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.04
KOG1230 521 consensus Protein containing repeated kelch motifs 97.73
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.7
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.46
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 97.23
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 97.22
KOG4693392 consensus Uncharacterized conserved protein, conta 97.19
KOG4693392 consensus Uncharacterized conserved protein, conta 96.88
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.79
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.63
KOG1230 521 consensus Protein containing repeated kelch motifs 96.03
KOG2997366 consensus F-box protein FBX9 [General function pre 96.0
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 94.21
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 93.96
smart00284255 OLF Olfactomedin-like domains. 92.87
PF1396450 Kelch_6: Kelch motif 91.86
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 91.54
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 91.52
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 91.24
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 90.35
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 90.31
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 90.16
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 89.17
KOG0316307 consensus Conserved WD40 repeat-containing protein 88.43
KOG0293519 consensus WD40 repeat-containing protein [Function 88.39
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 88.11
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 87.59
KOG4341483 consensus F-box protein containing LRR [General fu 87.51
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 87.36
PF1396450 Kelch_6: Kelch motif 87.2
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 86.81
PRK11138 394 outer membrane biogenesis protein BamB; Provisiona 86.64
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 83.05
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 82.26
KOG0315311 consensus G-protein beta subunit-like protein (con 82.12
smart0061247 Kelch Kelch domain. 80.14
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=6.5e-35  Score=260.35  Aligned_cols=223  Identities=27%  Similarity=0.490  Sum_probs=165.9

Q ss_pred             cccccceEEEEEecCcEEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCC
Q 046476           87 TQLINGFICFYNIVGFEILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNS  166 (376)
Q Consensus        87 ~~s~nGLl~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~  166 (376)
                      ++|||||||+.  ....++||||+||+++.||+++....     ...     ...++||||+.+++||||++.....   
T Consensus         1 ~~sCnGLlc~~--~~~~~~V~NP~T~~~~~LP~~~~~~~-----~~~-----~~~~~~G~d~~~~~YKVv~~~~~~~---   65 (230)
T TIGR01640         1 VVPCDGLICFS--YGKRLVVWNPSTGQSRWLPTPKSRRS-----NKE-----SDTYFLGYDPIEKQYKVLCFSDRSG---   65 (230)
T ss_pred             CcccceEEEEe--cCCcEEEECCCCCCEEecCCCCCccc-----ccc-----cceEEEeecccCCcEEEEEEEeecC---
Confidence            47999999998  44789999999999999997654220     111     1368999999999999999986532   


Q ss_pred             CcccceecCCCCCeEEEEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCCCCCC-CEEEEEEcCCceeE-EEeCC
Q 046476          167 SSYAWMIDNHGTPECEIFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPRKTK-PVLAVFDVKEEKFD-IVKLP  244 (376)
Q Consensus       167 ~~~~~~~~~~~~~~~~vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~il~fDl~~e~~~-~i~~P  244 (376)
                              ......++||++++++||.+...++.......+|++||++||++....+.. ..|++||+++|+|+ .+++|
T Consensus        66 --------~~~~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P  137 (230)
T TIGR01640        66 --------NRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP  137 (230)
T ss_pred             --------CCCCccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence                    113578999999999999998544322223349999999999997322112 28999999999999 59998


Q ss_pred             Ccc---cCcceeEecCCeEEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccc-cc-cCcEeEEEccCCcEE
Q 046476          245 DEV---RKHHDLIQAEEKLGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTI-MF-RPPIPVSNSNNGEIL  319 (376)
Q Consensus       245 ~~~---~~~~~L~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~-~~-~~~~~v~~~~~g~il  319 (376)
                      ...   .....|++++|+||++....  ...+++||+|++++   +..|+|+++ |+.... .+ ....|+++..+|+|+
T Consensus       138 ~~~~~~~~~~~L~~~~G~L~~v~~~~--~~~~~~IWvl~d~~---~~~W~k~~~-i~~~~~~~~~~~~~~~~~~~~g~I~  211 (230)
T TIGR01640       138 CGNSDSVDYLSLINYKGKLAVLKQKK--DTNNFDLWVLNDAG---KQEWSKLFT-VPIPPLPDLVDDNFLSGFTDKGEIV  211 (230)
T ss_pred             ccccccccceEEEEECCEEEEEEecC--CCCcEEEEEECCCC---CCceeEEEE-EcCcchhhhhhheeEeEEeeCCEEE
Confidence            754   23467999999999998762  23569999999984   556999999 664222 11 123477888899999


Q ss_pred             EEecccCCCcEEEEEeCCCC
Q 046476          320 LTEYKSSLVSRVFIYDLKTQ  339 (376)
Q Consensus       320 ~~~~~~~~~~~v~~ydl~t~  339 (376)
                      +.... .....+++||++++
T Consensus       212 ~~~~~-~~~~~~~~y~~~~~  230 (230)
T TIGR01640       212 LCCED-ENPFYIFYYNVGEN  230 (230)
T ss_pred             EEeCC-CCceEEEEEeccCC
Confidence            98832 11334999999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 47/302 (15%), Positives = 78/302 (25%), Gaps = 103/302 (34%)

Query: 105 LMRNVVTQEIIDLPK-----STFVVSDDDEDFSGPMIS-YFREYFLGFDPSSRDYKVLNI 158
           L+   +     DLP+     +   +S         +I+   R+    +D     +K +N 
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLS---------IIAESIRDGLATWDN----WKHVNC 352

Query: 159 SNKHTTNSSSYAWMIDNHGTP--------ECEIFTLGTTSWRKIDAPPSRIHFRRQGLCA 210
               T   SS      N   P           +F         I   P+ +      L  
Sbjct: 353 DKLTTIIESSL-----NVLEPAEYRKMFDRLSVFPPSA----HI---PTIL------LS- 393

Query: 211 NGFIHWIITNPRKTKPVLAVF--------DVKEEKFDI--------VKLPDEVRKHHDLI 254
              + W          V+             KE    I        VKL +E   H  ++
Sbjct: 394 ---LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 255 QAEEKLGVLDCDDFRSKNKIRVWI-------LKDYGRGGGEVWIRRDYV-FRF------- 299
                    D DD      +  +        LK+          R  ++ FRF       
Sbjct: 451 DHYNIPKTFDSDDL-IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

Query: 300 DTIMFRPPIPVSNSNNGEILLTEYKSSLVSRVFIYDLKTQERRAIKIPPVTEQ---DVVK 356
           D+  +     + N       L               LK  +       P  E+    ++ 
Sbjct: 510 DSTAWNASGSILN------TLQ-------------QLKFYKPYICDNDPKYERLVNAILD 550

Query: 357 FL 358
           FL
Sbjct: 551 FL 552

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.08
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.08
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.06
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.05
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.05
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.03
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.0
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.99
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.93
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.92
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.91
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.9
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.88
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.82
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.77
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.71
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.61
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.59
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.49
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.42
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.7
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.7
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.66
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.54
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.41
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 97.25
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.24
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 96.08
3jrp_A 379 Fusion protein of protein transport protein SEC13 95.32
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 94.82
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 94.23
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 93.79
3jro_A 753 Fusion protein of protein transport protein SEC13 93.75
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 92.86
4e54_B435 DNA damage-binding protein 2; beta barrel, double 92.66
3dwl_C 377 Actin-related protein 2/3 complex subunit 1; prope 90.64
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 90.08
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 89.4
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 88.65
3v9f_A 781 Two-component system sensor histidine kinase/RESP 88.26
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 87.82
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 87.31
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 87.26
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 86.93
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 86.83
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 86.69
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 86.56
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 86.14
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 85.77
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 85.63
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 84.94
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 84.23
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 83.99
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 83.73
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 83.66
3jrp_A379 Fusion protein of protein transport protein SEC13 83.17
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 82.78
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 82.2
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 82.03
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 81.87
3hrp_A 409 Uncharacterized protein; NP_812590.1, structural g 81.7
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 80.66
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
Probab=99.08  E-value=4.3e-08  Score=90.00  Aligned_cols=202  Identities=10%  Similarity=0.118  Sum_probs=128.7

Q ss_pred             EEEEEecCCcceecCCCCCcccCCCCCCCCCCccceeeEEEEEEeCCCCCeEEEEEEecCCCCCCcccceecCCCCCeEE
Q 046476          103 EILMRNVVTQEIIDLPKSTFVVSDDDEDFSGPMISYFREYFLGFDPSSRDYKVLNISNKHTTNSSSYAWMIDNHGTPECE  182 (376)
Q Consensus       103 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (376)
                      .++++||.|++|..+|+.+..+               ..++....   ++ +++.+.......        +......++
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~~r---------------~~~~~~~~---~~-~lyv~GG~~~~~--------~~~~~~~~~  120 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPSPR---------------CLFGLGEA---LN-SIYVVGGREIKD--------GERCLDSVM  120 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSSCE---------------ESCEEEEE---TT-EEEEECCEESST--------TCCBCCCEE
T ss_pred             ceEEecCCCCeEEECCCCCcch---------------hceeEEEE---CC-EEEEEeCCcCCC--------CCcccceEE
Confidence            4789999999999998876544               11111111   12 444443321100        023367899


Q ss_pred             EEEcCCCCeeecCCCCCcceecCCceEECceEEEEEeCCC--CCCCEEEEEEcCCceeEEEe-CCCcccCcceeEecCCe
Q 046476          183 IFTLGTTSWRKIDAPPSRIHFRRQGLCANGFIHWIITNPR--KTKPVLAVFDVKEEKFDIVK-LPDEVRKHHDLIQAEEK  259 (376)
Q Consensus       183 vys~~t~~Wr~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~~il~fDl~~e~~~~i~-~P~~~~~~~~L~~~~g~  259 (376)
                      +|+..+++|+.++..+. .......+.++|.+|.++....  .....+..||+.+++|+.++ +|.. ......+..+|+
T Consensus       121 ~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~  198 (315)
T 4asc_A          121 CYDRLSFKWGESDPLPY-VVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA-RSLFGATVHDGR  198 (315)
T ss_dssp             EEETTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEETTE
T ss_pred             EECCCCCcEeECCCCCC-cccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCc-hhceEEEEECCE
Confidence            99999999999987642 2235667889999999987311  12467999999999999885 3433 445667788999


Q ss_pred             EEEEEecCCCCCCeEEEEEEccCCCCCCCceeEEEEEeecccccccCcEeEEEccCCcEEEEecc-c----------CCC
Q 046476          260 LGVLDCDDFRSKNKIRVWILKDYGRGGGEVWIRRDYVFRFDTIMFRPPIPVSNSNNGEILLTEYK-S----------SLV  328 (376)
Q Consensus       260 L~~~~~~~~~~~~~~~IW~l~~~~~g~~~~W~~~~~ii~~~~~~~~~~~~v~~~~~g~il~~~~~-~----------~~~  328 (376)
                      |+++.... .....-.+|+++-.    ...|+++.. ++. +.   ....+++. ++.|++.--. .          ...
T Consensus       199 iyv~GG~~-~~~~~~~~~~yd~~----~~~W~~~~~-~p~-~r---~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~  267 (315)
T 4asc_A          199 IIVAAGVT-DTGLTSSAEVYSIT----DNKWAPFEA-FPQ-ER---SSLSLVSL-VGTLYAIGGFATLETESGELVPTEL  267 (315)
T ss_dssp             EEEEEEEC-SSSEEEEEEEEETT----TTEEEEECC-CSS-CC---BSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEE
T ss_pred             EEEEeccC-CCCccceEEEEECC----CCeEEECCC-CCC-cc---cceeEEEE-CCEEEEECCccccCcCCcccccccc
Confidence            99998763 12234578888753    578998755 332 11   11223322 5565554310 0          012


Q ss_pred             cEEEEEeCCCCcEEEE
Q 046476          329 SRVFIYDLKTQERRAI  344 (376)
Q Consensus       329 ~~v~~ydl~t~~~~~v  344 (376)
                      ..+..||+++++|+.+
T Consensus       268 ~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          268 NDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEEEEEETTTTEEEEE
T ss_pred             CcEEEecCCCChhhhh
Confidence            5689999999999998
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 376
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 0.002
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 0.002
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 7  DTVPHDVAMDVLKILPEKARMRFKCVSKTWYS 38
          D++P ++ + +   L     ++   V K WY 
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYR 33

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.2
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.56
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.42
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.42
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.27
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.23
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.58
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.54
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 93.36
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 92.72
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 88.71
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 88.03
d1kv9a2 560 Quinoprotein alcohol dehydrogenase, N-terminal dom 85.36
d1kb0a2 573 Quinoprotein alcohol dehydrogenase, N-terminal dom 81.74
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.3e-12  Score=78.91  Aligned_cols=37  Identities=19%  Similarity=0.459  Sum_probs=35.8

Q ss_pred             CCCChHHHHHHHccCCcccccccccccccchhhhcCC
Q 046476            7 DTVPHDVAMDVLKILPEKARMRFKCVSKTWYSSIKGT   43 (376)
Q Consensus         7 ~~LP~dll~~IL~rLp~~sl~r~r~VcK~W~~li~~~   43 (376)
                      +.||+||+.+||+.||+++++|+++|||+|+++++++
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~   38 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE   38 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            5799999999999999999999999999999999988
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure