Citrus Sinensis ID: 046513

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660
MSISTLESCKKRKRRPKLFGFHTFMESGCPISPTGAFRDNVRQFLSACGELEDYKVEGMSIWCTLLVHESSSIVFPLYTIEEHVKHSPQPYCDQCRCSGWANHYMSKRKYHWIIPIDCDWNKPLEDGVFDLQTHILHGLIHCNGFGHLLSINGIEGGSGYLCGREIMDLWDRICTNLRTCKVTVEDVSKKKSMDLRLLHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELDNIIQDFCGTDLCREMKQIFHHYRDMSETLLLTLKDLLRFMLTVKSCASAQKKTIMTTTKPSKRMTLRIKSVVKDKSVNYKRFSAVVAKMDSRWSARRLESAAEVIVNALQEQKAENLGHGGGMSRQKLRDAARMHIGDTGLLDYVLKSMNNVIVGSHIVHRAVNPATRLLEYTIHDLCDGAGISEPGPEISDEPLPPLALETGSDVYSEVVYLYMNVLLNYPESELVALATQAVLDSKHFVKEWPFRDEDDQFLRFKCQVMPSFVDSETDLTGKLPPGELVMIPLHSTVLELKEAAESALRDTYCIMENLGVTDVVNMQKLDDGELLFGAVESGSQVWIQGYGIDSDSKLRYEGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFAPSRTESSF
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccEEEEEEEEccccEEEEEEEEEccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHcccEEEEEEEEcccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHcccHHHHHcHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccHHHHHHHHHcccEEEccEEEEEEEccccccEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHccccccccccEEEEEEEEcccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccEEEccccccEEccccccccccccccccccccccccccccccccccc
ccEEccccHHHHcccccEEEcccccccccccccccHHHHHHHHHHHHHccccHcccccccEEEEEEEcccccEEEEEEEEEccccccccccccccEEEEcccccccccEEEEEEEccccHccHHHHHHccccccEEEEEEEcccccEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEEHHccccccEEEHHHHHccccccccccEEEccccccccHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccHHHHHHHHccccEcccEEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEcccHHHHccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcEEEEcccccccccccHHEEEEccccEEEEEEEccccccEEEEccccccEEEEEEcccccccccEEEEEccccEEEEEEcccccccccccccEEEHHccHHcccccccccc
msistlesckkrkrrpklfgfhtfmesgcpisptgafrDNVRQFLSACGELEDYKVEGMSIWCTLLVhesssivfplytieehvkhspqpycdqcrcsgwanhymskrkyhwiipidcdwnkpledgvFDLQTHILHGLIHCNGFGHLLsingieggsgylcGREIMDLWDRIctnlrtckvtvedvskkksmDLRLLHGVAyghswfgrwgykffhgsfgvreqNYNRAIEILSSLELDNIIQDFCGTDLCREMKQIFHHYRDMSETLLLTLKDLLRFMLTVKSCASAQKktimtttkpskrmTLRIKSVVKDKSVNYKRFSAVVAKMDSRWSARRLESAAEVIVNALQEQkaenlghgggmsrQKLRDAARMHIGDTGLLDYVLKSMNNVIVGSHIvhravnpatrLLEYTIHdlcdgagisepgpeisdeplpplaletgsdVYSEVVYLYMNVLLNYPESELVALATQAVLDskhfvkewpfrdeddQFLRFKCqvmpsfvdsetdltgklppgelvmiPLHSTVLELKEAAESALRDTYCIMENLgvtdvvnmqklddgelLFGAVESGSQVWIQGygidsdsklryeggndkwivkcecgaqdddgermVACDICEVwqhtrchgiedsgtvpplfvcprccssfapsrtessf
msistlesckkrkrrpklfgfhtfmesgcpisptGAFRDNVRQFLSACGELEDYKVEGMSIWCTLLVHESSSIVFPLYTIEEHVKHSPQPYCDQCRCSGWANHYMSKRKYHWIIPIDCDWNKPLEDGVFDLQTHILHGLIHCNGFGHLLSINGIEGGSGYLCGREIMDLWDRICTNLRtckvtvedvskkksmdlRLLHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELDNIIQDFCGTDLCREMKQIFHHYRDMSETLLLTLKDLLRFMLTVKscasaqkktimtttkpskrmtlriksvvkdksvnykrFSAVVAKMDSRWSARRLESAAEVIVNALQeqkaenlghgggmSRQKLRDAARMHIGDTGLLDYVLKSMNNVIVGSHIVHRAVNPATRLLEYTIHDLCDGAGISEPGPEISDEPLPPLALETGSDVYSEVVYLYMNVLLNYPESELVALATQAVLDSKHFVKEWPFRDEDDQFLRFKCQVMPSFVDSETDLTGKLPPGELVMIPLHSTVLELKEAAESALRDTYCIMENLGVTDVVNMQKLDDGELLFGAVESGSQVWIQGYGIDSDSKLRYEGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSsfapsrtessf
MSISTLESCKKRKRRPKLFGFHTFMESGCPISPTGAFRDNVRQFLSACGELEDYKVEGMSIWCTLLVHESSSIVFPLYTIEEHVKHSPQPYCDQCRCSGWANHYMSKRKYHWIIPIDCDWNKPLEDGVFDLQTHILHGLIHCNGFGHLLSINGIEGGSGYLCGREIMDLWDRICTNLRTCKVTVEDVSKKKSMDLRLLHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELDNIIQDFCGTDLCREMKQIFHHYRDMSEtllltlkdllrfmltVKSCASAQKKTIMTTTKPSKRMTLRIKSVVKDKSVNYKRFSAVVAKMDSRWSARRLESAAEVIVNALQEQKAENLGHGGGMSRQKLRDAARMHIGDTGLLDYVLKSMNNVIVGSHIVHRAVNPATRLLEYTIHDLCDGAGISEPGPEISDEPLPPLALETGSDVYSEVVYLYMNVLLNYPESELVALATQAVLDSKHFVKEWPFRDEDDQFLRFKCQVMPSFVDSETDLTGKLPPGELVMIPLHSTVLELKEAAESALRDTYCIMENLGVTDVVNMQKLDDGELLFGAVESGSQVWIQGYGIDSDSKLRYEGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFAPSRTESSF
*****************LFGFHTFMESGCPISPTGAFRDNVRQFLSACGELEDYKVEGMSIWCTLLVHESSSIVFPLYTIEEHVKHSPQPYCDQCRCSGWANHYMSKRKYHWIIPIDCDWNKPLEDGVFDLQTHILHGLIHCNGFGHLLSINGIEGGSGYLCGREIMDLWDRICTNLRTCKVTVEDVSKKKSMDLRLLHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELDNIIQDFCGTDLCREMKQIFHHYRDMSETLLLTLKDLLRFMLTVKSCASAQKKTIM*********TLRIKSVVKDKSVNYKRFSAVVAKMDSRWSARRLESAAEVIVNAL**********************ARMHIGDTGLLDYVLKSMNNVIVGSHIVHRAVNPATRLLEYTIHDLCDGAGI***************ALETGSDVYSEVVYLYMNVLLNYPESELVALATQAVLDSKHFVKEWPFRDEDDQFLRFKCQVMPSFVDSETDLTGKLPPGELVMIPLHSTVLELKEAAESALRDTYCIMENLGVTDVVNMQKLDDGELLFGAVESGSQVWIQGYGIDSDSKLRYEGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSS**********
**************RPKLFGFHTFMESGCPISPTGAFRDNVRQFLSACGELEDYKVEGMSIWCTLLVHESSSIVFPLYTIEEHVKHSPQPYCDQCRCSGWANHYMSKRKYHWIIPIDCDWNKPLEDGVFDLQTHILHGLIHCNGFGHLLSINGIEGGSGYLCGREIMDLWDRICTNLRTCKVTVEDVSKKKSMDLRLLHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELDNIIQDFCGTDLCREMKQIFHHYRDMSETLLLTLKDLLRFMLTVK***********************************************RWSARRLESAAEVIVNALQEQKAENLGHGGGMSRQKLRDAARMHIGDTGLLDYVLKSMNNVIVGSHIVHRAVNPATRLLEYTIHD**********************ALETGSDVYSEVVYLYMNVL*****************DSKHFVKEWPFRDEDDQFLRFKCQVMP*****************************************YCI*****************************************************IVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRC*************
**********KRKRRPKLFGFHTFMESGCPISPTGAFRDNVRQFLSACGELEDYKVEGMSIWCTLLVHESSSIVFPLYTIEEHVKHSPQPYCDQCRCSGWANHYMSKRKYHWIIPIDCDWNKPLEDGVFDLQTHILHGLIHCNGFGHLLSINGIEGGSGYLCGREIMDLWDRICTNLRTCKVTVEDVSKKKSMDLRLLHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELDNIIQDFCGTDLCREMKQIFHHYRDMSETLLLTLKDLLRFMLTVKSCASAQKKTIMTTTKPSKRMTLRIKSVVKDKSVNYKRFSAVVAKMDSRWSARRLESAAEVIVNALQEQKAENLGHGGGMSRQKLRDAARMHIGDTGLLDYVLKSMNNVIVGSHIVHRAVNPATRLLEYTIHDLCDGAGISEPGPEISDEPLPPLALETGSDVYSEVVYLYMNVLLNYPESELVALATQAVLDSKHFVKEWPFRDEDDQFLRFKCQVMPSFVDSETDLTGKLPPGELVMIPLHSTVLELKEAAESALRDTYCIMENLGVTDVVNMQKLDDGELLFGAVESGSQVWIQGYGIDSDSKLRYEGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSF*********
****TLESCKKRKRRPKLFGFHTFMESGCPISPTGAFRDNVRQFLSACGELEDYKVEGMSIWCTLLVHESSSIVFPLYTIEEHVKHSPQPYCDQCRCSGWANHYMSKRKYHWIIPIDCDWNKPLEDGVFDLQTHILHGLIHCNGFGHLLSINGIEGGSGYLCGREIMDLWDRICTNLRTCKVTVEDVSKKKSMDLRLLHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELDNIIQDFCGTDLCREMKQIFHHYRDMSETLLLTLKDLLRFMLTVKSCA**********************************FSAVVAKMDSRWSARRLESAAEVIVNALQEQKAENLGHGGGMSRQKLRDAARMHIGDTGLLDYVLKSMNNVIVGSHIVHRAVNPATRLLEYTIHDLCD**********ISDEPLPPLALETGSDVYSEVVYLYMNVLLNYPESELVALATQAVLDSKHFVKEWPFRDEDDQFLRFKCQVMPSFVDSETDLTGKLPPGELVMIPLHSTVLELKEAAESALRDTYCIMENLGVTDVVNMQKLDDGELLFGAVESGSQVWIQGYGIDSDSKLRYEGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSF*********
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MSISTLESCKKRKRRPKLFGFHTFMESGCPISPTGAFRDNVRQFLSACGELEDYKVEGMSIWCTLLVHESSSIVFPLYTIEEHVKHSPQPYCDQCRCSGWANHYMSKRKYHWIIPIDCDWNKPLEDGVFDLQTHILHGLIHCNGFGHLLSINGIEGGSGYLCGREIMDLWDRICTNLRTCKVTVEDVSKKKSMDLRLLHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELDNIIQDFCGTDLCREMKQIFHHYRDMSETLLLTLKDLLRFMLTVKSCASAQKKTIMTTTKPSKRMTLRIKSVVKDKSVNYKRFSAVVAKMDSRWSxxxxxxxxxxxxxxxxxxxxxNLGHGGGMSRQKLRDAARMHIGDTGLLDYVLKSMNNVIVGSHIVHRAVNPATRLLEYTIHDLCDGAGISEPGPEISDEPLPPLALETGSDVYSEVVYLYMNVLLNYPESELVALATQAVLDSKHFVKEWPFRDEDDQFLRFKCQVMPSFVDSETDLTGKLPPGELVMIPLHSTVLELKEAAESALRDTYCIMENLGVTDVVNMQKLDDGELLFGAVESGSQVWIQGYGIDSDSKLRYEGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFAPSRTESSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query660 2.2.26 [Sep-21-2011]
Q7X6Y7704 PHD finger protein MALE M yes no 0.974 0.913 0.551 0.0
Q9ZUA9697 PHD finger protein At2g01 no no 0.960 0.909 0.414 1e-154
Q9FMS5672 PHD finger protein MALE S no no 0.916 0.900 0.332 3e-94
Q9C810697 PHD finger protein At1g33 no no 0.916 0.868 0.292 1e-73
P93310160 Uncharacterized mitochond no no 0.198 0.818 0.479 2e-25
P36124 751 SET domain-containing pro yes no 0.075 0.066 0.431 2e-05
Q10362 859 SET domain-containing pro yes no 0.071 0.054 0.428 9e-05
Q8IZD2 1858 Histone-lysine N-methyltr yes no 0.069 0.024 0.458 0.0001
Q3UG20 1868 Histone-lysine N-methyltr yes no 0.069 0.024 0.458 0.0002
Q6C0K9 822 Transcription factor BYE1 no no 0.092 0.074 0.393 0.0003
>sp|Q7X6Y7|MMD1_ARATH PHD finger protein MALE MEIOCYTE DEATH 1 OS=Arabidopsis thaliana GN=MMD1 PE=2 SV=1 Back     alignment and function desciption
 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/667 (55%), Positives = 472/667 (70%), Gaps = 24/667 (3%)

Query: 1   MSISTLESCKKRKRRPKLFGFHTFMESGCPISPTGAFRDNVRQFLSACGELEDYKVEGMS 60
           M +  +E+C+KRKR+PK++    F E G PI   GAFRD +R FL  C E+EDY + GM+
Sbjct: 1   MPVPIIETCRKRKRKPKVYNLQRFGEDGFPIQRNGAFRDQIRVFLRDCAEIEDYDIRGMT 60

Query: 61  IWCTLLVHESSSIVFPLYTIEEHVKHSPQPYCDQCRCSGWANHYMSKRKYHWIIPIDCDW 120
           +WCTLL HE+ S + PLY +EE+VKHS +PYCD CRC+GW+NH++SKRKYH+IIPID +W
Sbjct: 61  VWCTLLSHETKSSLIPLYIVEENVKHSSEPYCDHCRCTGWSNHFVSKRKYHFIIPIDTEW 120

Query: 121 NKPLEDGVFDLQTHILHGLIHCNGFGHLLSINGIEGGSGYLCGREIMDLWDRICTNLRTC 180
           + PLED  FD Q+H+LHGLIHCNGFGHL+ +NG+E GS YLCGREI+D WDR+C +L   
Sbjct: 121 SLPLEDDAFDSQSHVLHGLIHCNGFGHLVCVNGMESGSKYLCGREIVDFWDRLCNSLGAR 180

Query: 181 KVTVEDVSKKKSMDLRLLHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELD 240
            +TVED++KK+S++LRLL+GVAYGHSWFGRWGYKF  GSFGV +  Y  AIE L SLE+D
Sbjct: 181 MITVEDLAKKRSVELRLLYGVAYGHSWFGRWGYKFCCGSFGVTKNEYENAIEALGSLEID 240

Query: 241 NIIQDFCGTDLCREMKQIFHHYRDMSETLLLTLKDLLRFMLTVKSCASAQKKTIMTT--- 297
            I  DF      +E+ Q+F +YR+MSE  L T +DLLRFML +KS AS QK   +T    
Sbjct: 241 QIEFDFGELRQSKEINQVFRYYREMSEGHLKTFRDLLRFMLIIKSHASPQKLLPVTPPLL 300

Query: 298 -----TKPSKRMTLRIKSVV-KDKSVNYKRFSAVVAKMDSRWSARRLESAAEVIVNALQE 351
                 K S R+ L+   V   DKS  Y+ +S V A + SRW  RRL  AAEVIV +L+E
Sbjct: 301 TDSPHQKRSSRLLLKKSDVADNDKSPKYRNYSTVAANLGSRWPVRRLIFAAEVIVESLKE 360

Query: 352 QKAENLGHGGGMSRQKLRDAARMHIGDTGLLDYVLKSMNNVIVGSHIVHRAVNPATRLLE 411
            KA       GM+RQ +RD+AR+HIGDTGLLDYVLKSMNNV+VG  +V R V+P TR+L 
Sbjct: 361 MKALK---QNGMTRQDVRDSARLHIGDTGLLDYVLKSMNNVVVGDVLVRRYVDPITRILH 417

Query: 412 YTIHDLCDGA--GISEPGPEISDEPLPPL----ALETGSDVYSEVVYLYMNVLLNYPESE 465
           YTI DL D       +    +  E + PL     L+ G+DVY +++ LY NVLLNYPESE
Sbjct: 418 YTIQDLDDAVKAKEPKKKEAVVLEEITPLRILTPLKPGADVYGDLLLLYTNVLLNYPESE 477

Query: 466 LVALATQAVLDSKHFVKEWPFRDEDDQFLRFKCQVMPSFVDSETDLTGKLPPGELVMIPL 525
           LV  ATQA+LDSKHF+KEWP  D +D  L+F C++ PS VD  ++ T +LPPGELV +PL
Sbjct: 478 LVRSATQAILDSKHFIKEWPIWDNNDTVLQFLCRINPSLVDVRSEQTTELPPGELVTVPL 537

Query: 526 HSTVLELKEAAESALRDTYCIMENLGVTDVVNMQKLDDGELLFGAVESGSQVWIQGYGID 585
            +TV +LK+A E   RDTYCI+ N  VT++      D+ E     + S S + ++G+GID
Sbjct: 538 QATVYDLKQAIEETFRDTYCILSNFVVTEI------DEVEEDMSLIGSCSALTVRGHGID 591

Query: 586 SDSKLRYEGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCP 645
            +SKL+ +GG D W+VKC C A+DDDGERM++CD+CEVWQHTRC GI+DS T+PPLFVC 
Sbjct: 592 LESKLKCQGGCDTWMVKCICRARDDDGERMISCDVCEVWQHTRCCGIDDSDTLPPLFVCS 651

Query: 646 RCCSSFA 652
            CC  FA
Sbjct: 652 NCCEEFA 658
Probable transcription factor required for chromosome organization and progression during male meiosis (e.g. microsporogenesis).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZUA9|Y2181_ARATH PHD finger protein At2g01810 OS=Arabidopsis thaliana GN=At2g01810 PE=3 SV=1 Back     alignment and function description
>sp|Q9FMS5|MS1_ARATH PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana GN=MS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420 OS=Arabidopsis thaliana GN=At1g33420 PE=1 SV=1 Back     alignment and function description
>sp|P93310|M550_ARATH Uncharacterized mitochondrial protein AtMg00550 OS=Arabidopsis thaliana GN=AtMg00550 PE=2 SV=3 Back     alignment and function description
>sp|P36124|SET3_YEAST SET domain-containing protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SET3 PE=1 SV=1 Back     alignment and function description
>sp|Q10362|SET3_SCHPO SET domain-containing protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=set3 PE=1 SV=1 Back     alignment and function description
>sp|Q8IZD2|MLL5_HUMAN Histone-lysine N-methyltransferase MLL5 OS=Homo sapiens GN=MLL5 PE=1 SV=1 Back     alignment and function description
>sp|Q3UG20|MLL5_MOUSE Histone-lysine N-methyltransferase MLL5 OS=Mus musculus GN=Mll5 PE=1 SV=2 Back     alignment and function description
>sp|Q6C0K9|BYE1_YARLI Transcription factor BYE1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=BYE1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query660
225451363683 PREDICTED: PHD finger protein MALE MEIOC 0.995 0.961 0.663 0.0
255585578698 DNA binding protein, putative [Ricinus c 0.989 0.935 0.615 0.0
449512955708 PREDICTED: LOW QUALITY PROTEIN: PHD fing 0.986 0.919 0.608 0.0
449456755671 PREDICTED: PHD finger protein MALE MEIOC 0.983 0.967 0.612 0.0
356552001708 PREDICTED: PHD finger protein MALE MEIOC 0.995 0.927 0.576 0.0
224065092591 predicted protein [Populus trichocarpa] 0.889 0.993 0.634 0.0
357491915739 PHD finger protein [Medicago truncatula] 0.989 0.883 0.553 0.0
356499075707 PREDICTED: PHD finger protein MALE MEIOC 0.992 0.926 0.575 0.0
42562994704 male meiotic MMD1 PHD-finger protein [Ar 0.974 0.913 0.551 0.0
297841205705 hypothetical protein ARALYDRAFT_894251 [ 0.971 0.909 0.544 0.0
>gi|225451363|ref|XP_002263205.1| PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Vitis vinifera] gi|147772045|emb|CAN73422.1| hypothetical protein VITISV_032904 [Vitis vinifera] gi|296087078|emb|CBI33452.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  937 bits (2422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/666 (66%), Positives = 540/666 (81%), Gaps = 9/666 (1%)

Query: 1   MSISTLESCKKRKRRPKLFGFHTFMESGCPISPTGAFRDNVRQFLSACGELEDYKVEGMS 60
           MSI  LE+CKKRKRRPKLFGFHTF + GCPI+PT  F DN+R FL  C ELEDY V+GM 
Sbjct: 1   MSIPILEACKKRKRRPKLFGFHTFADPGCPINPTSHFCDNIRIFLRECAELEDYNVDGMP 60

Query: 61  IWCTLLVHESSSIVFPLYTIEEHVKHSPQPYCDQCRCSGWANHYMSKRKYHWIIPIDCDW 120
            WCTLLV+E+   V P+YTIEE VK++ +P+CD CRC+GW+NH++SKR+YH IIPID +W
Sbjct: 61  TWCTLLVNENRGFVVPVYTIEESVKYAAKPFCDHCRCTGWSNHFVSKRRYHIIIPIDDEW 120

Query: 121 NKPLEDGVFDLQTHILHGLIHCNGFGHLLSINGIEGGSGYLCGREIMDLWDRICTNLRTC 180
           NKPL+DGVFDLQTH+LHG+IHCNGFGHLL INGIEGGSGYLCGREIMDLWDRICT LRT 
Sbjct: 121 NKPLDDGVFDLQTHLLHGMIHCNGFGHLLCINGIEGGSGYLCGREIMDLWDRICTILRTR 180

Query: 181 KVTVEDVSKKKSMDLRLLHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELD 240
           K+TVED SKK+ MDLRLLHGVAYGH WFGRWGY+F HGSFGV+E NY RAIEILSSLELD
Sbjct: 181 KITVEDSSKKRFMDLRLLHGVAYGHPWFGRWGYRFCHGSFGVKEPNYERAIEILSSLELD 240

Query: 241 NIIQDFCGTDLCREMKQIFHHYRDMSETLLLTLKDLLRFMLTVKSCASAQKKTIM----- 295
            II+DF  TD C +++QIF  YRD+SET L+TLKD+LR MLT+KS A  QKK  +     
Sbjct: 241 QIIEDFGCTDRCMKIRQIFRFYRDLSETQLITLKDILRIMLTLKSRAPVQKKMNIVPDLP 300

Query: 296 --TTTKPSKRMTLRIKSVVKDKSVNYKRFSAVVAKMDSRWSARRLESAAEVIVNALQEQK 353
             +T KPS R +L+ +  +KDK++ +K+FS ++  MDSRW ARRLE AA+VIVNAL+E++
Sbjct: 301 ASSTLKPSTRRSLQNRPPLKDKTMKFKKFSTLITNMDSRWPARRLEYAADVIVNALREKR 360

Query: 354 AENLGHGGGMSRQKLRDAARMHIGDTGLLDYVLKSMNNVIVGSHIVHRAVNPATRLLEYT 413
           A    H  GM+RQ++RDAARMHIGDTGLLDYVLKSMNNVIVG+H+V RAVNPATR+LEYT
Sbjct: 361 ASECTH-DGMTRQEVRDAARMHIGDTGLLDYVLKSMNNVIVGNHVVCRAVNPATRVLEYT 419

Query: 414 IHDLCDGAGISEPGPEISDEPLPPLALETGSDVYSEVVYLYMNVLLNYPESELVALATQA 473
           + +L  G  +SE   E+  +P P  ++  G+DVY++V+YLY NVLLNYP+SELV LAT+A
Sbjct: 420 LKELGKGTLVSELESEMLPKPFPEQSIVPGADVYNDVIYLYRNVLLNYPDSELVELATRA 479

Query: 474 VLDSKHFVKEWPFRDEDDQFLRFKCQVMPSFVDSETDLTGKLPPGELVMIPLHSTVLELK 533
           VLDSKHFVKEWPF DEDDQ LRF C +MPS  + E   T +LPPGE +++P ++TV ELK
Sbjct: 480 VLDSKHFVKEWPFSDEDDQLLRFVCHMMPSLSELEI-FTRELPPGEFIVVPPYATVGELK 538

Query: 534 EAAESALRDTYCIMENLGVTDVVNMQKLDDGELLFGAVESGSQVWIQGYGIDSDSKLRYE 593
           E  E  LRDTYCIME + VT++ +M+ + D E+LFG +ESGS+VW++G G+D +++L+YE
Sbjct: 539 ETVERTLRDTYCIMEQVVVTEIEDMEGMTDEEVLFGTIESGSEVWMRGTGMDLEAELKYE 598

Query: 594 GGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFAP 653
           GG+D W V CECGA DDDGERMVACDICEVWQHT C GI+DS TVPPLFVCP+CC+   P
Sbjct: 599 GGSDNWRVSCECGALDDDGERMVACDICEVWQHTVCSGIDDSETVPPLFVCPKCCALLVP 658

Query: 654 SRTESS 659
           +R+ESS
Sbjct: 659 ARSESS 664

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255585578|ref|XP_002533478.1| DNA binding protein, putative [Ricinus communis] gi|223526671|gb|EEF28910.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449512955|ref|XP_004164188.1| PREDICTED: LOW QUALITY PROTEIN: PHD finger protein MALE MEIOCYTE DEATH 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449456755|ref|XP_004146114.1| PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356552001|ref|XP_003544360.1| PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224065092|ref|XP_002301666.1| predicted protein [Populus trichocarpa] gi|222843392|gb|EEE80939.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357491915|ref|XP_003616245.1| PHD finger protein [Medicago truncatula] gi|355517580|gb|AES99203.1| PHD finger protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356499075|ref|XP_003518369.1| PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1-like [Glycine max] Back     alignment and taxonomy information
>gi|42562994|ref|NP_176791.2| male meiotic MMD1 PHD-finger protein [Arabidopsis thaliana] gi|75232134|sp|Q7X6Y7.1|MMD1_ARATH RecName: Full=PHD finger protein MALE MEIOCYTE DEATH 1 gi|31442870|gb|AAO16873.1| male meiotic MMD1 [Arabidopsis thaliana] gi|32140244|gb|AAP69944.1| male meiotic chromosome organization protein [Arabidopsis thaliana] gi|332196350|gb|AEE34471.1| male meiotic MMD1 PHD-finger protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297841205|ref|XP_002888484.1| hypothetical protein ARALYDRAFT_894251 [Arabidopsis lyrata subsp. lyrata] gi|297334325|gb|EFH64743.1| hypothetical protein ARALYDRAFT_894251 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query660
TAIR|locus:2013845704 MMD1 "AT1G66170" [Arabidopsis 0.974 0.913 0.542 8.7e-198
TAIR|locus:2065388697 AT2G01810 "AT2G01810" [Arabido 0.446 0.423 0.445 2.4e-140
TAIR|locus:2176317672 MS1 "AT5G22260" [Arabidopsis t 0.383 0.376 0.384 1.9e-88
TAIR|locus:2006882697 AT1G33420 "AT1G33420" [Arabido 0.222 0.210 0.434 3.4e-63
TAIR|locus:2828076196 AT2G07714 "AT2G07714" [Arabido 0.204 0.688 0.492 4.5e-28
UNIPROTKB|C9JNE1230 MLL5 "Histone-lysine N-methylt 0.074 0.213 0.452 2.6e-06
ZFIN|ZDB-GENE-050320-67296 phf23a "PHD finger protein 23a 0.095 0.212 0.363 3.5e-05
TAIR|locus:2038021 1068 AT1G32810 [Arabidopsis thalian 0.072 0.044 0.490 3.5e-05
RGD|1309641 478 Mll5 "myeloid/lymphoid or mixe 0.074 0.102 0.452 6.6e-05
UNIPROTKB|F1M476 478 Mll5 "Protein Mll5" [Rattus no 0.074 0.102 0.452 6.6e-05
TAIR|locus:2013845 MMD1 "AT1G66170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1915 (679.2 bits), Expect = 8.7e-198, P = 8.7e-198
 Identities = 362/667 (54%), Positives = 469/667 (70%)

Query:     1 MSISTLESCKKRKRRPKLFGFHTFMESGCPISPTGAFRDNVRQFLSACGELEDYKVEGMS 60
             M +  +E+C+KRKR+PK++    F E G PI   GAFRD +R FL  C E+EDY + GM+
Sbjct:     1 MPVPIIETCRKRKRKPKVYNLQRFGEDGFPIQRNGAFRDQIRVFLRDCAEIEDYDIRGMT 60

Query:    61 IWCTLLVHESSSIVFPLYTIEEHVKHSPQPYCDQCRCSGWANHYMSKRKYHWIIPIDCDW 120
             +WCTLL HE+ S + PLY +EE+VKHS +PYCD CRC+GW+NH++SKRKYH+IIPID +W
Sbjct:    61 VWCTLLSHETKSSLIPLYIVEENVKHSSEPYCDHCRCTGWSNHFVSKRKYHFIIPIDTEW 120

Query:   121 NKPLEDGVFDLQTHILHGLIHCNGFGHLLSINGIEGGSGYLCGREIMDLWDRICTNLRTC 180
             + PLED  FD Q+H+LHGLIHCNGFGHL+ +NG+E GS YLCGREI+D WDR+C +L   
Sbjct:   121 SLPLEDDAFDSQSHVLHGLIHCNGFGHLVCVNGMESGSKYLCGREIVDFWDRLCNSLGAR 180

Query:   181 KVTVEDVSKKKSMDLRLLHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELD 240
              +TVED++KK+S++LRLL+GVAYGHSWFGRWGYKF  GSFGV +  Y  AIE L SLE+D
Sbjct:   181 MITVEDLAKKRSVELRLLYGVAYGHSWFGRWGYKFCCGSFGVTKNEYENAIEALGSLEID 240

Query:   241 NIIQDFCGTDLCREMKQIFHHYRDMSEXXXXXXXXXXXXXXXVKSCASAQKKTIMT---- 296
              I  DF      +E+ Q+F +YR+MSE               +KS AS QK   +T    
Sbjct:   241 QIEFDFGELRQSKEINQVFRYYREMSEGHLKTFRDLLRFMLIIKSHASPQKLLPVTPPLL 300

Query:   297 TTKPSKRMTLRI---KSVV--KDKSVNYKRFSAVVAKMDSRWSARRLESAAEVIVNALQE 351
             T  P ++ + R+   KS V   DKS  Y+ +S V A + SRW  RRL  AAEVIV +L+E
Sbjct:   301 TDSPHQKRSSRLLLKKSDVADNDKSPKYRNYSTVAANLGSRWPVRRLIFAAEVIVESLKE 360

Query:   352 QKAENLGHGGGMSRQKLRDAARMHIGDTGLLDYVLKSMNNVIVGSHIVHRAVNPATRLLE 411
              KA       GM+RQ +RD+AR+HIGDTGLLDYVLKSMNNV+VG  +V R V+P TR+L 
Sbjct:   361 MKALKQN---GMTRQDVRDSARLHIGDTGLLDYVLKSMNNVVVGDVLVRRYVDPITRILH 417

Query:   412 YTIHDLCDGAGISEPGPE--ISDEPLPPLALET----GSDVYSEVVYLYMNVLLNYPESE 465
             YTI DL D     EP  +  +  E + PL + T    G+DVY +++ LY NVLLNYPESE
Sbjct:   418 YTIQDLDDAVKAKEPKKKEAVVLEEITPLRILTPLKPGADVYGDLLLLYTNVLLNYPESE 477

Query:   466 LVALATQAVLDSKHFVKEWPFRDEDDQFLRFKCQVMPSFVDSETDLTGKLPPGELVMIPL 525
             LV  ATQA+LDSKHF+KEWP  D +D  L+F C++ PS VD  ++ T +LPPGELV +PL
Sbjct:   478 LVRSATQAILDSKHFIKEWPIWDNNDTVLQFLCRINPSLVDVRSEQTTELPPGELVTVPL 537

Query:   526 HSTVLELKEAAESALRDTYCIMENLGVTDVVNMQKLDDGELLFGAVESGSQVWIQGYGID 585
              +TV +LK+A E   RDTYCI+ N  VT++    ++++   L G   S S + ++G+GID
Sbjct:   538 QATVYDLKQAIEETFRDTYCILSNFVVTEI---DEVEEDMSLIG---SCSALTVRGHGID 591

Query:   586 SDSKLRYEGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCP 645
              +SKL+ +GG D W+VKC C A+DDDGERM++CD+CEVWQHTRC GI+DS T+PPLFVC 
Sbjct:   592 LESKLKCQGGCDTWMVKCICRARDDDGERMISCDVCEVWQHTRCCGIDDSDTLPPLFVCS 651

Query:   646 RCCSSFA 652
              CC  FA
Sbjct:   652 NCCEEFA 658
GO:0003677 "DNA binding" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005634 "nucleus" evidence=IDA
TAIR|locus:2065388 AT2G01810 "AT2G01810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176317 MS1 "AT5G22260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006882 AT1G33420 "AT1G33420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2828076 AT2G07714 "AT2G07714" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|C9JNE1 MLL5 "Histone-lysine N-methyltransferase MLL5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050320-67 phf23a "PHD finger protein 23a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2038021 AT1G32810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1309641 Mll5 "myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M476 Mll5 "Protein Mll5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7X6Y7MMD1_ARATHNo assigned EC number0.55170.97420.9133yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query660
pfam0062851 pfam00628, PHD, PHD-finger 3e-08
smart0024947 smart00249, PHD, PHD zinc finger 2e-06
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information 
 Score = 49.8 bits (119), Expect = 3e-08
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 603 CECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPP--LFVCPRC 647
           C    + DD   ++ CD C+ W H  C G        P   + CP C
Sbjct: 2   CAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPEC 48

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 660
KOG1844508 consensus PHD Zn-finger proteins [General function 99.96
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.58
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.43
KOG1844 508 consensus PHD Zn-finger proteins [General function 98.25
KOG1973274 consensus Chromatin remodeling protein, contains P 98.18
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.8
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.01
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 96.55
KOG0825 1134 consensus PHD Zn-finger protein [General function 95.5
KOG0954 893 consensus PHD finger protein [General function pre 95.29
KOG0957 707 consensus PHD finger protein [General function pre 94.62
KOG1632 345 consensus Uncharacterized PHD Zn-finger protein [G 94.56
KOG1512381 consensus PHD Zn-finger protein [General function 93.34
KOG1244336 consensus Predicted transcription factor Requiem/N 92.29
KOG1632345 consensus Uncharacterized PHD Zn-finger protein [G 90.73
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 89.29
PF07227 446 DUF1423: Protein of unknown function (DUF1423); In 85.36
COG5141 669 PHD zinc finger-containing protein [General functi 81.97
KOG0957707 consensus PHD finger protein [General function pre 81.57
PF1040773 Cytokin_check_N: Cdc14 phosphatase binding protein 80.15
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information 
Probab=99.96  E-value=1.3e-30  Score=285.20  Aligned_cols=479  Identities=22%  Similarity=0.249  Sum_probs=340.2

Q ss_pred             CCCCCccccCCCCCcccCCceEEEeecCCCCCCcccccccccccchhcccccccCccceEEeccccCCCccccccchhhh
Q 046513           90 PYCDQCRCSGWANHYMSKRKYHWIIPIDCDWNKPLEDGVFDLQTHILHGLIHCNGFGHLLSINGIEGGSGYLCGREIMDL  169 (660)
Q Consensus        90 ~~Cd~Cr~vGWs~H~Vc~krYHFIip~~~~~~~~~~~~~l~~~~HlLHG~iH~NGfGHLl~vNGrEgGS~~LsG~~iMd~  169 (660)
                      ++|++|++.||+.|.||+++||||||++..|....+..+++.++|.+||.+|+||+||++++||+|.|+.          
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----------   82 (508)
T KOG1844|consen   13 PRCSHCCKFGWSPHLVANKKYEHIIPADAELFEESTSQSNEPSTASPHGTAHEPGKGVLLSLNGSEAGSE----------   82 (508)
T ss_pred             cccccccccCCcccccccccccccccCCcccccCCchhhccccccccccccccCCCCccccccccccccC----------
Confidence            8999999999999999999999999999999988888999999999999999999999999999999998          


Q ss_pred             HHHHhhhccceeeeeeeccccccchhhhhhhhhcCCcccccccccccccccccch-HHHHHHHHHhhcCchhhhhhcccC
Q 046513          170 WDRICTNLRTCKVTVEDVSKKKSMDLRLLHGVAYGHSWFGRWGYKFFHGSFGVRE-QNYNRAIEILSSLELDNIIQDFCG  248 (660)
Q Consensus       170 WDrlC~~LraRkVSv~DvSkK~gmdlRLLh~Va~G~sWyG~WGY~fg~GsFgvt~-~~Y~~Aie~Lss~pL~~~~~~~~~  248 (660)
                               +++++..|.+.+.+|     |+++.+++|+|+|+|+||-|+|+.+. +.|..++...++++++........
T Consensus        83 ---------~~~~~~c~c~~~~~~-----~g~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~~~~~~~~~~~~~~  148 (508)
T KOG1844|consen   83 ---------AREISRCDCGLEDDM-----EGLMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPRNKEVERALALKRQ  148 (508)
T ss_pred             ---------cCcccccccccccCC-----CceeeCCcccCcccCceeeeecCCCCchhceeeeeccccccchhhhhcccc
Confidence                     899999999999999     99999999999999999999999999 999999999999999977777665


Q ss_pred             CcchhhHHHHHHHhhccchhhhhhHHHHHHHHHHhhcccccccccccccCCCcccccccccc--------c-cccccccc
Q 046513          249 TDLCREMKQIFHHYRDMSETLLLTLKDLLRFMLTVKSCASAQKKTIMTTTKPSKRMTLRIKS--------V-VKDKSVNY  319 (660)
Q Consensus       249 ~~~~~~~~~ii~~Y~~lS~~~L~Tl~dL~~fmL~l~s~~~~~~~~~~~~~~~~~~~~l~~~~--------~-~~~~~~~~  319 (660)
                      ......+..+..+|++++..++.+..+++++|+.+.+..+..+-....+..+..+..+....        . +-.+.+..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (508)
T KOG1844|consen  149 SIEPEVLEPIRSTYRSLSQDSLDTTSDLKSFMLALISLSTKVKDHASDPELPKDRNISPSSTPFRCSTGNDEDIKKDSSD  228 (508)
T ss_pred             cccccccCccchhhhhhcccCCCchHHHHHHHhhccccCccccccccCcccccccccccccccccccccchhhhcccccc
Confidence            55456788899999999999999999999999999987741111111110000000000000        0 00001111


Q ss_pred             chhhhhcccccCcccHHHHHHHHHHHHHHHHHhhhcccCCCCCccHHHHHHHHhcccCCchhHHHHHHhcCcceecCcEE
Q 046513          320 KRFSAVVAKMDSRWSARRLESAAEVIVNALQEQKAENLGHGGGMSRQKLRDAARMHIGDTGLLDYVLKSMNNVIVGSHIV  399 (660)
Q Consensus       320 ~~~~~~~~~~~~rWs~~r~~~A~~~~v~vLr~~~a~~~~~~~wvsR~~LR~aar~~IGdtgLLD~~LK~l~~~vv~~~vv  399 (660)
                      +.-....++...+|..+...+..+.....+......  ... |+....+|...+..|+|++..+.......+...++..+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (508)
T KOG1844|consen  229 PDSDAVTSGSLGPELKELLIRRREDAGSFLLSNEVK--DQQ-QVVCVRVRTSCRPDIEDKEYSNEDNQGESDVLNGDVSS  305 (508)
T ss_pred             ccccccccccccchhhHHHHhhhhhhhhhhhhhhcc--ccc-cccceeeeeccCcccccccchhhccccccccccCcccc
Confidence            112233344444444444444444333333322222  133 99999999999999999999999999999999999999


Q ss_pred             EEeecCCCCceEEEeeccCCCCCCCCCCCC----C--CCCCCCCCCCCchhhHhhHHHHHHHhhhcCCCchhHHHHHHHH
Q 046513          400 HRAVNPATRLLEYTIHDLCDGAGISEPGPE----I--SDEPLPPLALETGSDVYSEVVYLYMNVLLNYPESELVALATQA  473 (660)
Q Consensus       400 rrr~Np~t~~lEy~Le~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~v~~Dl~~lY~~vL~~yp~~~~~~~Aa~~  473 (660)
                      ++-.++.+..+.+.+-.++.....+.....    +  .....-.....+ .-+..|+..++..++..+++......+.+.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (508)
T KOG1844|consen  306 RKSVHSKGRKLPQYLNELDFGNKAENRFQLEKRSLGVAKPKPSFTEHSP-QYVGSDLLGLSTRLPLVEPHSDRRKVASQL  384 (508)
T ss_pred             ccccccccccccccccccchhhhcccchhhhhhchhhhcccccccCCCc-cccccccccccccceeeccCCccccccccc
Confidence            999998887777776666543221111000    0  000011111113 556777888888888788888888899999


Q ss_pred             hhccccccccCCCCCCCCceeEEEEEEeeCCCCcccccCCCCCCCceeeecCCCCHHHHHHHHHHHHHHHHhhhcceeee
Q 046513          474 VLDSKHFVKEWPFRDEDDQFLRFKCQVMPSFVDSETDLTGKLPPGELVMIPLHSTVLELKEAAESALRDTYCIMENLGVT  553 (660)
Q Consensus       474 iLD~K~FvK~y~~~~~~~~~l~~~c~v~~~~~~~~~e~~~~~pP~Elvvlp~~ATv~dLK~ea~~afrDtY~~~~~f~ve  553 (660)
                      +++.|++++.|.-.     ....-|.+-+.......+.....+++.+..+|+.+|+..++..+...+.+.|      ..+
T Consensus       385 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  453 (508)
T KOG1844|consen  385 ILRAKRFDKAVRGM-----HKLRAIRIAPNLEEVRPEAATVSDKPILKEKPPEATSASLKSPEVEELLGSY------ETT  453 (508)
T ss_pred             ccccccccccccch-----hhhhhcccCchhhhhhhhhhhccCCccccccCcccccccccchhHHHhhcce------eee
Confidence            99999999995421     1222233333322221222245789999999999999999999999998888      222


Q ss_pred             eecccccCCcchhhcceeccCCeEEEeeecCCCCcccccccCCCCccEEeecCCCCCCCC
Q 046513          554 DVVNMQKLDDGELLFGAVESGSQVWIQGYGIDSDSKLRYEGGNDKWIVKCECGAQDDDGE  613 (660)
Q Consensus       554 ~l~~~~~~~d~~~~~g~i~sg~~v~vrG~~~d~~~~~r~e~g~d~~~VrCiCG~~dDDGe  613 (660)
                      .+   .   +....+...+....+.+++...+...+.+.+.+...|.+.|.|+..++||+
T Consensus       454 ~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (508)
T KOG1844|consen  454 RI---R---KELDKKNLKGECPRFEVKSFTRHEEKEVKDERPKDSRRVDCKCGATDDDGE  507 (508)
T ss_pred             cc---C---cchhhccccccceeeeeeeeehhhhhhhhhhCCchhhhHhhhccCcCCCCC
Confidence            22   1   111122233322234444444555566777888899999999999999985

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp [] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query660
1wee_A72 Solution Structure Of Phd Domain In Phd Finger Fami 1e-13
2lv9_A98 Solution Nmr Structure Of The Phd Domain Of Human M 4e-05
>pdb|1WEE|A Chain A, Solution Structure Of Phd Domain In Phd Finger Family Protein Length = 72 Back     alignment and structure 
Iteration: 1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 41/62 (66%)
Query: 593 EGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFA 652
           E G D W V C+CG +DDDGERM+ACD C VW HTRC GI ++  +P  F+C RC     
Sbjct: 9   ERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68
Query: 653 PS 654
           PS
Sbjct: 69  PS 70
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5, Northeast Structural Genomics Consortium Target Hr6512a Length = 98 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query660
1wee_A72 PHD finger family protein; structural genomics, PH 2e-24
2k16_A75 Transcription initiation factor TFIID subunit 3; p 9e-18
3o70_A68 PHD finger protein 13; PHF13, structural genomics 9e-15
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 1e-14
1wew_A78 DNA-binding family protein; structural genomics, P 4e-12
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 5e-12
1wem_A76 Death associated transcription factor 1; structura 2e-11
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 5e-11
1we9_A64 PHD finger family protein; structural genomics, PH 6e-11
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 2e-08
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 2e-05
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 4e-05
3kv5_D 488 JMJC domain-containing histone demethylation prote 5e-05
1weu_A91 Inhibitor of growth family, member 4; structural g 2e-04
3lqh_A 183 Histone-lysine N-methyltransferase MLL; PHD finger 6e-04
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 6e-04
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
 Score = 96.1 bits (239), Expect = 2e-24
 Identities = 35/70 (50%), Positives = 42/70 (60%)

Query: 586 SDSKLRYEGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCP 645
           S      E G D W V C+CG +DDDGERM+ACD C VW HTRC GI ++  +P  F+C 
Sbjct: 2   SSGSSGMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCF 61

Query: 646 RCCSSFAPSR 655
           RC     PS 
Sbjct: 62  RCIELSGPSS 71
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query660
1wee_A72 PHD finger family protein; structural genomics, PH 99.6
1wew_A78 DNA-binding family protein; structural genomics, P 99.43
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 99.37
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 99.34
3o70_A68 PHD finger protein 13; PHF13, structural genomics 99.34
1we9_A64 PHD finger family protein; structural genomics, PH 99.32
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 99.3
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 99.3
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 99.29
1wem_A76 Death associated transcription factor 1; structura 99.21
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 99.12
2k16_A75 Transcription initiation factor TFIID subunit 3; p 99.02
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 98.87
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 98.86
2ri7_A 174 Nucleosome-remodeling factor subunit BPTF; zinc fi 98.86
3kv5_D 488 JMJC domain-containing histone demethylation prote 98.83
1weu_A91 Inhibitor of growth family, member 4; structural g 98.82
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 98.78
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 98.77
1x4i_A70 Inhibitor of growth protein 3; structural genomics 98.74
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 98.7
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 98.67
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 98.61
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 98.51
3lqh_A 183 Histone-lysine N-methyltransferase MLL; PHD finger 98.49
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 98.21
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 98.07
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 97.82
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 97.74
2yt5_A66 Metal-response element-binding transcription facto 97.71
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 97.7
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 97.63
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 97.63
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 97.6
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 97.59
3rsn_A 177 SET1/ASH2 histone methyltransferase complex subun; 97.56
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 97.54
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 97.49
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 97.47
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 97.42
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 97.16
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 97.15
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 97.1
3u5n_A 207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 97.08
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.03
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 96.96
3o36_A 184 Transcription intermediary factor 1-alpha; TRIM24, 96.81
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 96.79
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 96.72
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 96.7
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 96.55
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 96.44
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 95.5
2rno_A110 Putative DNA-binding protein; SUMO ligase, sumoyla 92.49
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 91.4
3ivp_A126 Putative transposon-related DNA-binding protein; A 86.89
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 86.47
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 81.91
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
Probab=99.60  E-value=1.9e-16  Score=132.24  Aligned_cols=66  Identities=52%  Similarity=1.109  Sum_probs=58.2

Q ss_pred             ccccccCCCCccEEeecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCCCCC
Q 046513          589 KLRYEGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFAPS  654 (660)
Q Consensus       589 ~~r~e~g~d~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~~~~  654 (660)
                      ..++|.+++++.++|+||.+++||++|||||.|+.|||..|+|++..+..|+.|+|+.|.++..++
T Consensus         5 ~~~~e~~~~~~~~~C~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ps   70 (72)
T 1wee_A            5 SSGMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPS   70 (72)
T ss_dssp             SCCCSCSSCSSEECCTTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSSC
T ss_pred             cccccCCCCCcceEeeCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCCC
Confidence            346788889999999999998888899999999999999999999766678999999998765543
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 660
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 1e-17
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 6e-12
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 2e-11
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 5e-11
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 3e-10
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 1e-05
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 6e-05
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 2e-04
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 0.001
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.5 bits (185), Expect = 1e-17
 Identities = 34/62 (54%), Positives = 41/62 (66%)

Query: 593 EGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFA 652
           E G D W V C+CG +DDDGERM+ACD C VW HTRC GI ++  +P  F+C RC     
Sbjct: 9   ERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68

Query: 653 PS 654
           PS
Sbjct: 69  PS 70
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query660
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 99.38
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 99.18
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 99.08
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.93
d1wema_76 Death associated transcription factor 1, Datf1 (DI 98.89
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.64
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.52
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.51
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.4
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.07
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 97.64
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.38  E-value=4e-14  Score=115.81  Aligned_cols=63  Identities=54%  Similarity=1.177  Sum_probs=54.3

Q ss_pred             cccCCCCccEEeecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCCCCC
Q 046513          592 YEGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFAPS  654 (660)
Q Consensus       592 ~e~g~d~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~~~~  654 (660)
                      .|.+.++|.++|+|+..+++++.||+||.|+.|||..|++++..+..+..|+|+.|...+.+.
T Consensus         8 ~e~~~~~~~~~C~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~~~p~   70 (72)
T d1weea_           8 MERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPS   70 (72)
T ss_dssp             CSCSSCSSEECCTTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSSC
T ss_pred             cccCCCCCeEEeeCCCCcCCCCeEEEeCCCCCcCchhhcCCccccCCCCcEECcCCcCcCCcC
Confidence            456678899999999988888899999999999999999998766667899999998765543
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure