Citrus Sinensis ID: 046529

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------80
MGSSGDYQTINTTDGLEACYYANSSGTIRIWRNHDQFNFPSYAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILEMFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQFMNYKCRTIQRTKEKAEFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIFVDRGLGSDEDKESQLKDHHGIQHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYISRKTANKSESRKHDRMSIDHY
ccccccccEEcccccEEcccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHccccccccEEEEEEEcccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHHHccccccEEEEEEcccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEEccccccccccccccccHHHHHHHccccHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHcccccEEEEccccccccccccccccccccccccccHHHHHHHcccccccccEEEEEEEcccccccccccccccccccccc
ccccccEEEEcccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHEEEEEHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHEHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccccEEEEEEEccccccHHHHHHHHHccccccccEEEEEEEEEEccccccHHEEEcccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEccHHHHHHHHHHHHHHccEEEEEEEccccccccccccccHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccccccccHHHHHHcHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHcccccEEEEEccccccccccHHcccccHHHcccccccHHHHccccccccEEEEEEEEEEccccccccccccccccccccc
mgssgdyqtintTDGLEACYYANSSGTIRIwrnhdqfnfpsyapLFLIQLAYVLFINHLLVAILkplrqppivgqilemfpyksVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVFCSairgdnnlsdtHISFVLAGVLLCGfitdgcgahsaigaftlgvimpkkqpitntfkdklddflvssglpgfflltgfrsnlvvfsshkpWMFVLVVLFGFGMSKILITFLVSLLhkippkeglaLGLLMNTKGLLALIVLNTAcnrkdlvdeafpptIFALFVMTCVIEPILAATYKATKQFMNYKCRTIQRTKEKAEFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMndgsnstgfndscpmqATEAEQFKKAFENYEKTSNNAVNVHTLTsvsshesmHEDICCLAEDKRVAFIIipyirplttndkirnantnrtvnlnllqntpcsvcifvdrglgsdedkesqlkdHHGIQHLLMLFLGGPDDREALAYAWRMaahpnvkltvvrflpgkdprtvlhqkhnsevarctekqaddedIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDLsdncdlyiIGRREGAESRLTYDlsldnltnfpelgVIGSVLAMSNFSLHASVLVIQQYISrktanksesrkhdrmsidhy
mgssgdyqtinttDGLEACYYANSSGTIRIWRNHDQFNFPSYAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILEMFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQFMNYKCRTIQRTKEKAEFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPyirplttndkirnANTNRtvnlnllqntpCSVCIFVDRGLGSDEDKESQLKDHHGIQHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPrtvlhqkhnsevarctekqaddedIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYisrktanksesrkhdrmsidhy
MGSSGDYQTINTTDGLEACYYANSSGTIRIWRNHDQFNFPSYAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILEMFPYKSVMLLETyayiallfylfliGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQFMNYKCRTIQRTKEKAEFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIFVDRGLGSDEDKESQLKDHHGIQHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYISRKTANKSESRKHDRMSIDHY
********TINTTDGLEACYYANSSGTIRIWRNHDQFNFPSYAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILEMFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQFMNYKCRTIQRTKEKAEFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLM***************************************VHTL********MHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIFVDRGL************HHGIQHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVL******************EDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYIS********************
**********NTTDGLEACYYANSSGTIRIWRNHDQFNFPSYAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILEMFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKAT***********************ACIHSTRNIAGMINLLQ***********VFAVHLVEH*********************************KKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIR**************RTVNLNLLQNTPCSVCIFVDRGLGS***********HGIQHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGK**********************DDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGA************LTNFPELGVIGSVLAMSNFSLHASVLVI*************************
MGSSGDYQTINTTDGLEACYYANSSGTIRIWRNHDQFNFPSYAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILEMFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQFMNYKCRTIQRTKEKAEFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFENYEKTSNNAVNVHTLT*********EDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIFVDRGLGSDEDKESQLKDHHGIQHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYISR*******************
****GDYQTINTTDGLEACYYANSSGTIRIWRNHDQFNFPSYAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILEMFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQFMNYKCRTIQRTKEKAEFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDG**************TEAEQFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIFVDRGLGS******QLKDHHGIQHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGK**************ARCTEKQADDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYISR*******************
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGSSGDYQTINTTDGLEACYYANSSGTIRIWRNHDQFNFPSYAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILEMFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQFMNYKCRTIQRTKEKAEFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIFVDRGLGSDEDKESQLKDHHGIQHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYISRKTANKSESRKHDRMSIDHY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query799 2.2.26 [Sep-21-2011]
Q8VYD4867 Cation/H(+) antiporter 23 yes no 0.903 0.832 0.416 1e-162
Q9SIT5821 Cation/H(+) antiporter 15 no no 0.939 0.914 0.387 1e-154
Q9SKA9832 Cation/H(+) antiporter 21 no no 0.941 0.903 0.377 1e-145
Q9FFR9810 Cation/H(+) antiporter 18 no no 0.934 0.922 0.336 1e-110
Q9SUQ7820 Cation/H(+) antiporter 17 no no 0.911 0.887 0.331 1e-106
Q9LUN4800 Cation/H(+) antiporter 19 no no 0.922 0.921 0.335 1e-106
Q9M353842 Cation/H(+) antiporter 20 no no 0.919 0.872 0.304 1e-89
Q1HDT3811 Cation/H(+) antiporter 16 no no 0.883 0.870 0.297 2e-85
Q9LMJ1829 Cation/H(+) antiporter 14 no no 0.883 0.851 0.291 8e-79
Q1HDT2859 Cation/H(+) antiporter 24 no no 0.893 0.831 0.284 1e-77
>sp|Q8VYD4|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1 Back     alignment and function desciption
 Score =  574 bits (1479), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 322/774 (41%), Positives = 474/774 (61%), Gaps = 52/774 (6%)

Query: 41  SYAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQIL------------------EMFPY 82
           S  P F+ QL        +L  + +PL  PP V QIL                   +FPY
Sbjct: 49  SSLPFFITQLFVANLSYRVLYYLTRPLYLPPFVAQILCGLLFSPSVLGNTRFIIAHVFPY 108

Query: 83  KSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFL 142
           +  M+LET+A +AL++ +FL+GL MD+ ++  T +  K V IA  G LV + VG   ++L
Sbjct: 109 RFTMVLETFANLALVYNIFLLGLGMDLRMVRITEL--KPVIIAFTGLLVALPVGAFLYYL 166

Query: 143 VIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWM 202
             G         G +F +VAL  TNF +L +IL DL++L  D+GR A+ +A+++DL TW+
Sbjct: 167 P-GNGHPDKIISGCVFWSVALACTNFPDLARILADLKLLRSDMGRTAMCAAIVTDLCTWV 225

Query: 203 LLLACILVSNPSQYYE------VLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHI 256
           LL+      + S  +       +++T  F+L+C+ V+RP ++W+F   ++   ++ DTH+
Sbjct: 226 LLVFGFASFSKSGTWNKMMPFVIITTAIFVLLCIFVIRPGIAWIFAKTVKA-GHVGDTHV 284

Query: 257 SFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFL 316
            F+L GV+LCG ITD CG HS  GAF  G+ +P    I N  ++KL DFL    +P F++
Sbjct: 285 WFILGGVVLCGLITDACGVHSITGAFLFGLSIPHDHIIRNMIEEKLHDFLSGILMPLFYI 344

Query: 317 LTGFRSNL-VVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTK 375
           + G R+++  +      +M V+V+   F + KI+ T + SL   IP ++  A+G LMNTK
Sbjct: 345 ICGLRADIGFMLQFTDKFMMVVVICSSF-LVKIVTTVITSLFMHIPMRDAFAIGALMNTK 403

Query: 376 GLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQFMNYKCRTIQR 435
           G L+L+VLN   + K L    +     AL VM+ V+EP+LA  YK  K+  +YK RT+Q+
Sbjct: 404 GTLSLVVLNAGRDTKALDSPMYTHMTIALLVMSLVVEPLLAFAYKPKKKLAHYKHRTVQK 463

Query: 436 TKEKAEFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTA-MLLMND 494
            K + E R++AC+H   N++G+ NLLQVSNAT QS + VFA+HLVE  G +TA +L+MND
Sbjct: 464 IKGETELRVLACVHVLPNVSGITNLLQVSNATKQSPLSVFAIHLVELTGRTTASLLIMND 523

Query: 495 GSN-STGFNDSCPMQATEAEQFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAE 553
                  F+D       E++Q  + FE  E  +N+A+ V T+T+VS + +MHEDIC LAE
Sbjct: 524 ECKPKANFSDRV---RAESDQIAETFEAME-VNNDAMTVQTITAVSPYATMHEDICVLAE 579

Query: 554 DKRVAFIIIPYIRPLTTNDKIRNANTNRT-VNLNLLQNTPCSVCIFVDRGLG---SDEDK 609
           DKRV FII+PY + LT + ++   N++   +N N+L + PCSV I VDRG+    S+  +
Sbjct: 580 DKRVCFIILPYHKHLTPDGRMGEGNSSHAEINQNVLSHAPCSVGILVDRGMAMVRSESFR 639

Query: 610 ESQLKDHHGIQHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKH 669
              +K     + + MLF+GGPDDREAL+YAWRM     +KLTVVRF+PG++   +   K 
Sbjct: 640 GESMK-----REVAMLFVGGPDDREALSYAWRMVGQHVIKLTVVRFVPGREA-LISSGKV 693

Query: 670 NSEVARCTEKQADDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDLSDN--CDLYI 727
            +E  R  EKQ DDE IYEF FKTMND S+ YIE VVN+G++ +A I+++ DN   DLY+
Sbjct: 694 AAEYER--EKQVDDECIYEFNFKTMNDSSVKYIEKVVNDGQDTIATIREMEDNNSYDLYV 751

Query: 728 IGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYISRK 781
           +GR   ++S +T    L++ ++ PELG IG  LA SNF++HASVLVIQQY + K
Sbjct: 752 VGRGYNSDSPVT--AGLNDWSSSPELGTIGDTLASSNFTMHASVLVIQQYSATK 803
Operates as a K(+)/H(+) antiporter or Na(+)/H(+) antiporter of the chloroplast envelope that functions in pH homeostasis and chloroplast development. Monovalent cation transporter with a preference for Cs(+), K(+) and Rb(+) relative to Na(+) or Li(+). Required for pollen tube guidance, but not for normal pollen development. May also be involved in the development or function of the female gametophyte.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIT5|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKA9|CHX21_ARATH Cation/H(+) antiporter 21 OS=Arabidopsis thaliana GN=CHX21 PE=2 SV=2 Back     alignment and function description
>sp|Q9FFR9|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1 Back     alignment and function description
>sp|Q9SUQ7|CHX17_ARATH Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1 Back     alignment and function description
>sp|Q9LUN4|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1 Back     alignment and function description
>sp|Q9M353|CHX20_ARATH Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1 Back     alignment and function description
>sp|Q1HDT3|CHX16_ARATH Cation/H(+) antiporter 16 OS=Arabidopsis thaliana GN=CHX16 PE=2 SV=1 Back     alignment and function description
>sp|Q9LMJ1|CHX14_ARATH Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1 Back     alignment and function description
>sp|Q1HDT2|CHX24_ARATH Cation/H(+) antiporter 24 OS=Arabidopsis thaliana GN=CHX24 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query799
224093332860 cation proton exchanger [Populus trichoc 0.951 0.883 0.434 1e-170
255550512834 Na(+)/H(+) antiporter, putative [Ricinus 0.969 0.929 0.404 1e-164
22329355867 cation/H(+) antiporter 23 [Arabidopsis t 0.903 0.832 0.416 1e-161
61658331859 cation/H+ exchanger [Arabidopsis thalian 0.903 0.840 0.416 1e-160
297848842866 cation/H+ exchanger [Arabidopsis lyrata 0.904 0.834 0.412 1e-160
449457335889 PREDICTED: cation/H(+) antiporter 15-lik 0.916 0.823 0.403 1e-159
224096008769 cation proton exchanger [Populus trichoc 0.928 0.964 0.402 1e-159
359477011837 PREDICTED: cation/H(+) antiporter 15-lik 0.932 0.890 0.403 1e-158
296088536820 unnamed protein product [Vitis vinifera] 0.928 0.904 0.405 1e-158
147785381837 hypothetical protein VITISV_011183 [Viti 0.932 0.890 0.402 1e-157
>gi|224093332|ref|XP_002309885.1| cation proton exchanger [Populus trichocarpa] gi|222852788|gb|EEE90335.1| cation proton exchanger [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 356/820 (43%), Positives = 515/820 (62%), Gaps = 60/820 (7%)

Query: 1   MGSSGDYQTINTTDGLEACYYANSSGTIRIWRNHDQFN--FPSYAPLFLIQLAYVLFINH 58
           M  SG Y    T DG EACYY N +G      N+ Q      +  PLF++QL+ VLF   
Sbjct: 1   MAESG-YLVNRTKDGSEACYYVNQTGG-----NYFQSTSALTTSLPLFVLQLSVVLFTTR 54

Query: 59  LLVAILKPLRQPPIVGQIL------------------EMFPYKSVMLLETYAYIALLFYL 100
           LL+ IL+PLRQP IV  I                    + P+K+V +LET+A +AL++Y+
Sbjct: 55  LLLLILRPLRQPSIVALITAGVLLGPSALGTTPLFFDHVLPFKAVKVLETFANLALVYYM 114

Query: 101 FLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVI---GESQEFITQGGYM 157
           FL GL+MD+  I  +G  ++ + IA++G L+P+  G G F+L+     +++E  +  G +
Sbjct: 115 FLFGLEMDLKPIMNSG--SEAIRIAISGILIPLGFGFGLFYLLQLLDSDAKEISSFKGSI 172

Query: 158 FCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYY 217
           F A+ LTATNF ++TQ+LTDL++L  D+GR+A+SSA+ SD FTW+LL+  + + N   YY
Sbjct: 173 FWAITLTATNFPDVTQVLTDLKLLRTDMGRLAMSSAVSSDFFTWILLVVAMSLLNAHPYY 232

Query: 218 EVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHS 277
            +   + F+L+C  V+RP +S +   A++GD+  ++ HI FVL  ++  GFITD  G HS
Sbjct: 233 VLPFILAFVLLCCFVIRPVISKIANHAVKGDD-FTEQHIWFVLGWIVFFGFITDAFGLHS 291

Query: 278 AIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVL 337
            +G+F LGVIMP++  I     ++LDDF+    +P FFL +G R++        PW  + 
Sbjct: 292 MVGSFMLGVIMPRRDVIRMKLMERLDDFVSGIMMPLFFLTSGTRTDAGFLLKETPWYAIF 351

Query: 338 VVLF-GFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEA 396
           +++F  FG +KIL T LV LLH  P ++G ALG++MNTKG++++I++N   N K L ++ 
Sbjct: 352 IIIFLSFG-AKILSTLLVFLLHNKPLEDGFALGVIMNTKGVMSIIIINAGRNIKVLNNQT 410

Query: 397 FPPTIFALFVMTCVIEPILAATYKATKQFMNYKCRTIQRT-KEKAEFRIMACIHSTRNIA 455
           F   +F+   MTC++EPI+AATYK  K+ + YK RTI+       EF+I+AC+ S R+  
Sbjct: 411 FTLMVFSALAMTCLVEPIVAATYKPRKKLLRYKHRTIESVLVNGVEFKILACVLSNRDAP 470

Query: 456 GMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQA-TEAEQ 514
            MI+LL+ SNA     I V AVHLVE  G +TAML+++D S ++  N   P++A +E++Q
Sbjct: 471 CMISLLEASNAGPDFPICVIAVHLVELTGRNTAMLIVHDHSMTSMSN---PIRAKSESDQ 527

Query: 515 FKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKI 574
              AF++YEK  N AV+V T+T++S +E+MHEDIC LA DKRV+ IIIP+   LT + ++
Sbjct: 528 IIFAFKSYEK-RNGAVSVQTITAISPYENMHEDICSLALDKRVSLIIIPFQTVLTADGRV 586

Query: 575 RNA-NTNRTVNLNLLQNTPCSVCIFVDRGLGS-----DEDKESQLKDHHGIQHLLMLFLG 628
            +A +T   +N  +L+N  CSV + VDRGLGS          S  K H     + M+F+G
Sbjct: 587 EDAKSTFPAMNQYVLENATCSVGLLVDRGLGSIMQTGPARNSSSSKGH----RIAMIFIG 642

Query: 629 GPDDREALAYAWRMAAHPNVKLTVVRFLPGK--DPRTVLH--QKHNSEVARCT----EKQ 680
           GPDDREALAYAWRMA HP + LTV+RFLPG+     T  H    H+   +  T    EK+
Sbjct: 643 GPDDREALAYAWRMAGHPGISLTVLRFLPGRIAAQSTPEHGSNSHDELFSSMTIEEREKR 702

Query: 681 ADDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTY 740
            DD+  YEF FKT++DESI+Y E VVNNG+E +A I+    + DLYI+GR E   S LT 
Sbjct: 703 LDDDYTYEFMFKTLDDESITYTEKVVNNGDETLAEIRRNDADFDLYIVGRGEKTRSVLTS 762

Query: 741 DLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYISR 780
            LS  +  +  ELG +G  LA SNF+ HASVLV+QQY+ +
Sbjct: 763 GLS--DWNSCQELGTMGDTLASSNFASHASVLVVQQYVPK 800

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550512|ref|XP_002516306.1| Na(+)/H(+) antiporter, putative [Ricinus communis] gi|223544536|gb|EEF46053.1| Na(+)/H(+) antiporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|22329355|ref|NP_172049.2| cation/H(+) antiporter 23 [Arabidopsis thaliana] gi|75304439|sp|Q8VYD4.1|CHX23_ARATH RecName: Full=Cation/H(+) antiporter 23, chloroplastic; AltName: Full=Protein CATION/H+ EXCHANGER 23; Short=AtCHX23 gi|18176086|gb|AAL59981.1| unknown protein [Arabidopsis thaliana] gi|20465303|gb|AAM20055.1| unknown protein [Arabidopsis thaliana] gi|332189738|gb|AEE27859.1| cation/H(+) antiporter 23 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|61658331|gb|AAX49549.1| cation/H+ exchanger [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297848842|ref|XP_002892302.1| cation/H+ exchanger [Arabidopsis lyrata subsp. lyrata] gi|297338144|gb|EFH68561.1| cation/H+ exchanger [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449457335|ref|XP_004146404.1| PREDICTED: cation/H(+) antiporter 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224096008|ref|XP_002310518.1| cation proton exchanger [Populus trichocarpa] gi|222853421|gb|EEE90968.1| cation proton exchanger [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359477011|ref|XP_002262677.2| PREDICTED: cation/H(+) antiporter 15-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088536|emb|CBI37527.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147785381|emb|CAN66285.1| hypothetical protein VITISV_011183 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query799
TAIR|locus:2031968867 CHX23 "cation/H+ exchanger 23" 0.902 0.831 0.417 7.3e-146
TAIR|locus:2054152821 CHX15 "cation/hydrogen exchang 0.858 0.835 0.401 6e-135
TAIR|locus:2160457810 CHX18 "cation/H+ exchanger 18" 0.854 0.843 0.348 1.2e-108
TAIR|locus:2090462800 CHX19 "cation/H+ exchanger 19" 0.872 0.871 0.340 3.5e-107
TAIR|locus:2128484820 CHX17 "cation/H+ exchanger 17" 0.871 0.848 0.329 1.5e-102
TAIR|locus:2024578811 CHX16 "cation/H+ exchanger 16" 0.857 0.844 0.292 6.4e-87
TAIR|locus:2084370842 CHX20 "cation/H+ exchanger 20" 0.710 0.674 0.323 9.3e-84
TAIR|locus:2007392829 CHX14 "cation/hydrogen exchang 0.814 0.785 0.280 4.7e-74
TAIR|locus:2171238857 CHX25 "cation/H+ exchanger 25" 0.793 0.739 0.293 6.7e-73
TAIR|locus:2166168859 CHX24 "cation/H+ exchanger 24" 0.818 0.761 0.276 3.7e-66
TAIR|locus:2031968 CHX23 "cation/H+ exchanger 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1425 (506.7 bits), Expect = 7.3e-146, P = 7.3e-146
 Identities = 317/760 (41%), Positives = 467/760 (61%)

Query:    41 SYAPLFLIQLAYVL--FINHLLVAILKPLRQPPIVGQ----ILEMFPYKSVMLLETXXXX 94
             SY  L+ +     L  F+  +L  +L     P ++G     I  +FPY+  M+LET    
Sbjct:    64 SYRVLYYLTRPLYLPPFVAQILCGLLF---SPSVLGNTRFIIAHVFPYRFTMVLETFANL 120

Query:    95 XXXXXXXXXGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLV-IGESQEFITQ 153
                      GL MD+ ++  T +  K V IA  G LV + VG   ++L   G   + I+ 
Sbjct:   121 ALVYNIFLLGLGMDLRMVRITEL--KPVIIAFTGLLVALPVGAFLYYLPGNGHPDKIIS- 177

Query:   154 GGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLL---ACILV 210
              G +F +VAL  TNF +L +IL DL++L  D+GR A+ +A+++DL TW+LL+   A    
Sbjct:   178 -GCVFWSVALACTNFPDLARILADLKLLRSDMGRTAMCAAIVTDLCTWVLLVFGFASFSK 236

Query:   211 S---NPSQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCG 267
             S   N    + +++T  F+L+C+ V+RP ++W+F   ++   ++ DTH+ F+L GV+LCG
Sbjct:   237 SGTWNKMMPFVIITTAIFVLLCIFVIRPGIAWIFAKTVKA-GHVGDTHVWFILGGVVLCG 295

Query:   268 FITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNL-VV 326
              ITD CG HS  GAF  G+ +P    I N  ++KL DFL    +P F+++ G R+++  +
Sbjct:   296 LITDACGVHSITGAFLFGLSIPHDHIIRNMIEEKLHDFLSGILMPLFYIICGLRADIGFM 355

Query:   327 FSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTA 386
                   +M V+V+   F + KI+ T + SL   IP ++  A+G LMNTKG L+L+VLN  
Sbjct:   356 LQFTDKFMMVVVICSSF-LVKIVTTVITSLFMHIPMRDAFAIGALMNTKGTLSLVVLNAG 414

Query:   387 CNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQFMNYKCRTIQRTKEKAEFRIMA 446
              + K L    +     AL VM+ V+EP+LA  YK  K+  +YK RT+Q+ K + E R++A
Sbjct:   415 RDTKALDSPMYTHMTIALLVMSLVVEPLLAFAYKPKKKLAHYKHRTVQKIKGETELRVLA 474

Query:   447 CIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTA-MLLMNDGSN-STGFNDS 504
             C+H   N++G+ NLLQVSNAT QS + VFA+HLVE  G +TA +L+MND       F+D 
Sbjct:   475 CVHVLPNVSGITNLLQVSNATKQSPLSVFAIHLVELTGRTTASLLIMNDECKPKANFSDR 534

Query:   505 CPMQATEAEQFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPY 564
               ++A E++Q  + FE  E  +N+A+ V T+T+VS + +MHEDIC LAEDKRV FII+PY
Sbjct:   535 --VRA-ESDQIAETFEAME-VNNDAMTVQTITAVSPYATMHEDICVLAEDKRVCFIILPY 590

Query:   565 IRPLTTNDKIRNANTNRT-VNLNLLQNTPCSVCIFVDRGLGSDEDKESQLKDHHGIQHLL 623
              + LT + ++   N++   +N N+L + PCSV I VDRG+      ES  +     + + 
Sbjct:   591 HKHLTPDGRMGEGNSSHAEINQNVLSHAPCSVGILVDRGMAMVRS-ES-FRGESMKREVA 648

Query:   624 MLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADD 683
             MLF+GGPDDREAL+YAWRM     +KLTVVRF+PG++   +   K  +E  R  EKQ DD
Sbjct:   649 MLFVGGPDDREALSYAWRMVGQHVIKLTVVRFVPGREA-LISSGKVAAEYER--EKQVDD 705

Query:   684 EDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDLSDN--CDLYIIGRREGAESRLTYD 741
             E IYEF FKTMND S+ YIE VVN+G++ +A I+++ DN   DLY++GR   ++S +T  
Sbjct:   706 ECIYEFNFKTMNDSSVKYIEKVVNDGQDTIATIREMEDNNSYDLYVVGRGYNSDSPVT-- 763

Query:   742 LSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYISRK 781
               L++ ++ PELG IG  LA SNF++HASVLVIQQY + K
Sbjct:   764 AGLNDWSSSPELGTIGDTLASSNFTMHASVLVIQQYSATK 803
GO:0005886 "plasma membrane" evidence=ISM
GO:0006812 "cation transport" evidence=IEA;IC
GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA
GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0035725 "sodium ion transmembrane transport" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0010183 "pollen tube guidance" evidence=IGI
GO:0071805 "potassium ion transmembrane transport" evidence=IDA
TAIR|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024578 CHX16 "cation/H+ exchanger 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084370 CHX20 "cation/H+ exchanger 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171238 CHX25 "cation/H+ exchanger 25" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166168 CHX24 "cation/H+ exchanger 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VYD4CHX23_ARATHNo assigned EC number0.41600.90360.8327yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query799
PLN03159832 PLN03159, PLN03159, cation/H(+) antiporter 15; Pro 0.0
pfam00999370 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang 3e-40
COG0475397 COG0475, KefB, Kef-type K+ transport systems, memb 9e-34
TIGR00932273 TIGR00932, 2a37, transporter, monovalent cation:pr 2e-14
>gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional Back     alignment and domain information 
 Score =  616 bits (1589), Expect = 0.0
 Identities = 313/801 (39%), Positives = 475/801 (59%), Gaps = 50/801 (6%)

Query: 12  TTDGLEACYYANSSGTIRIWRNHDQFNFPSYAPLFLIQLAYVLFINHLLVAILKPLRQPP 71
           +T     CY      T  IW+  +  +F    PLF++QL  V+    LLV ILKP RQP 
Sbjct: 12  STASSVVCYAPMMITTNGIWQGDNPLDFS--LPLFILQLTLVVVTTRLLVFILKPFRQPR 69

Query: 72  IVGQIL------------------EMFPYKSVMLLETYAYIALLFYLFLIGLDMDINLIS 113
           ++ +IL                   +FP +SVM+LET A + LL++LFL+G++MDI++I 
Sbjct: 70  VISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIR 129

Query: 114 ATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGY-MFCAVALTATNFQELT 172
            TG   K ++IA+AG  +P  +GL AF  +  +    + QG + +F  VAL+ T F  L 
Sbjct: 130 RTG--KKALAIAIAGMALPFCIGL-AFSFIFHQVSRNVHQGTFILFLGVALSVTAFPVLA 186

Query: 173 QILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNP-----SQYYEVLSTVGFIL 227
           +IL ++++++ ++GRIA+S+AL++D+  W+LL   I ++       +  + +LS+V F+L
Sbjct: 187 RILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVL 246

Query: 228 ICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVI 287
            C  VVRP + W+      G+   S+ +I  +L GV++ GFITD  G HS  GAF  G++
Sbjct: 247 FCFYVVRPGIWWIIRRTPEGET-FSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLV 305

Query: 288 MPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSK 347
           +P   P+  T  +KL+DF+    LP FF ++G ++N+        W  +++V+      K
Sbjct: 306 IPNG-PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGK 364

Query: 348 ILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVM 407
           I+ T +++  + +P +EG+ LG LMNTKGL+ +IVLN   +++ L DE+F   +     M
Sbjct: 365 IMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAM 424

Query: 408 TCVIEPILAATYKATKQFMNYKCRTIQRTKEKAEFRIMACIHSTRNIAGMINLLQVSNAT 467
           T +I P++   Y+  ++ + YK RTIQR+K  AE R++ C+H+ RN+  +INLL+ S+ T
Sbjct: 425 TALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPT 484

Query: 468 NQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFENYEKTSN 527
            +S I ++ +HLVE  G ++AML++++   S G       QA +++    AFENYE+ + 
Sbjct: 485 KRSPICIYVLHLVELTGRASAMLIVHNTRKS-GRPALNRTQA-QSDHIINAFENYEQHA- 541

Query: 528 NAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTN-RTVNLN 586
             V+V  LT++S + +MHED+C LAEDKRV+ IIIP+ +  T +  +   N   R VN N
Sbjct: 542 GCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQN 601

Query: 587 LLQNTPCSVCIFVDRGLGSDEDKESQLKDHHGIQHLLMLFLGGPDDREALAYAWRMAAHP 646
           +L N PCSV I VDRGL       S    H    H+ +LF GGPDDREALAYAWRM+ HP
Sbjct: 602 VLANAPCSVGILVDRGLSGATRLASNQVSH----HVAVLFFGGPDDREALAYAWRMSEHP 657

Query: 647 NVKLTVVRFLPGKD--PRTVLHQKHNSEVARCT-------EKQADDEDIYEFKFKTMNDE 697
            + LTV+RF+PG+D  P         S+    T       E+Q D+E I EF+ +   +E
Sbjct: 658 GITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNE 717

Query: 698 SISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIG 757
           SI Y E VV+NGEE VAAI+ +    DL+I+GR +G  S LT    L + +  PELG IG
Sbjct: 718 SIVYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLT--AGLTDWSECPELGAIG 775

Query: 758 SVLAMSNFSLHASVLVIQQYI 778
            +LA S+F+   SVLV+QQY+
Sbjct: 776 DLLASSDFAATVSVLVVQQYV 796

Length = 832
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family Back     alignment and domain information
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 799
PLN03159832 cation/H(+) antiporter 15; Provisional 100.0
KOG1650769 consensus Predicted K+/H+-antiporter [Inorganic io 100.0
PRK03562621 glutathione-regulated potassium-efflux system prot 100.0
PRK10669558 putative cation:proton antiport protein; Provision 100.0
PRK03659601 glutathione-regulated potassium-efflux system prot 100.0
COG0475397 KefB Kef-type K+ transport systems, membrane compo 100.0
PRK05326562 potassium/proton antiporter; Reviewed 100.0
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 100.0
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 100.0
COG4651408 RosB Kef-type K+ transport system, predicted NAD-b 99.97
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 99.93
TIGR00844810 c_cpa1 na(+)/h(+) antiporter. This model is specif 99.92
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 99.89
TIGR00840559 b_cpa1 sodium/hydrogen exchanger 3. This model is 99.86
COG3263574 NhaP-type Na+/H+ and K+/H+ antiporters with a uniq 99.85
PRK14853423 nhaA pH-dependent sodium/proton antiporter; Provis 99.78
TIGR00773373 NhaA Na+/H+ antiporter NhaA. These proteins are me 99.58
PRK11175305 universal stress protein UspE; Provisional 99.56
KOG1965575 consensus Sodium/hydrogen exchanger protein [Inorg 99.56
KOG4505467 consensus Na+/H+ antiporter [Inorganic ion transpo 99.39
PRK14856438 nhaA pH-dependent sodium/proton antiporter; Provis 99.35
PRK09560389 nhaA pH-dependent sodium/proton antiporter; Review 99.29
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.28
PRK14854383 nhaA pH-dependent sodium/proton antiporter; Provis 99.26
PRK09561388 nhaA pH-dependent sodium/proton antiporter; Review 99.24
PRK14855423 nhaA pH-dependent sodium/proton antiporter; Provis 99.22
PF06965378 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP 98.99
COG3004390 NhaA Na+/H+ antiporter [Inorganic ion transport an 98.95
KOG1966670 consensus Sodium/hydrogen exchanger protein [Inorg 98.91
PRK15456142 universal stress protein UspG; Provisional 98.72
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 98.71
cd01987124 USP_OKCHK USP domain is located between the N-term 98.64
PRK15005144 universal stress protein F; Provisional 98.62
PF00582140 Usp: Universal stress protein family; InterPro: IP 98.57
PRK09982142 universal stress protein UspD; Provisional 98.48
PRK15118144 universal stress global response regulator UspA; P 98.43
cd00293130 USP_Like Usp: Universal stress protein family. The 98.34
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 98.3
PRK11175305 universal stress protein UspE; Provisional 98.25
PRK10116142 universal stress protein UspC; Provisional 98.18
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 98.15
PF00582140 Usp: Universal stress protein family; InterPro: IP 98.15
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 98.07
PRK15005144 universal stress protein F; Provisional 98.04
PRK09982142 universal stress protein UspD; Provisional 98.02
PRK10116142 universal stress protein UspC; Provisional 97.96
PRK15118144 universal stress global response regulator UspA; P 97.84
cd00293130 USP_Like Usp: Universal stress protein family. The 97.84
PRK15456142 universal stress protein UspG; Provisional 97.79
cd01987124 USP_OKCHK USP domain is located between the N-term 97.75
COG0589154 UspA Universal stress protein UspA and related nuc 97.57
PF03812314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 97.29
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 97.12
PF05684378 DUF819: Protein of unknown function (DUF819); Inte 97.08
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 97.05
TIGR00793314 kdgT 2-keto-3-deoxygluconate transporter. This fam 96.98
COG0786404 GltS Na+/glutamate symporter [Amino acid transport 96.92
PRK03562621 glutathione-regulated potassium-efflux system prot 96.68
PRK12652357 putative monovalent cation/H+ antiporter subunit E 96.66
COG3493438 CitS Na+/citrate symporter [Energy production and 96.64
COG0385319 Predicted Na+-dependent transporter [General funct 96.44
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 96.43
PF03390414 2HCT: 2-hydroxycarboxylate transporter family; Int 96.35
PRK03659601 glutathione-regulated potassium-efflux system prot 96.27
PRK10669558 putative cation:proton antiport protein; Provision 96.26
COG2855334 Predicted membrane protein [Function unknown] 96.06
PRK05274326 2-keto-3-deoxygluconate permease; Provisional 95.94
COG0475397 KefB Kef-type K+ transport systems, membrane compo 95.94
PF13593313 DUF4137: SBF-like CPA transporter family (DUF4137) 95.75
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 95.75
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 95.58
PRK05326562 potassium/proton antiporter; Reviewed 95.51
TIGR00841286 bass bile acid transporter. Functionally character 95.41
COG3180352 AbrB Putative ammonia monooxygenase [General funct 95.41
COG0589154 UspA Universal stress protein UspA and related nuc 95.36
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 94.46
PRK10490 895 sensor protein KdpD; Provisional 94.41
TIGR00783347 ccs citrate carrier protein, CCS family. These pro 94.35
PLN03159 832 cation/H(+) antiporter 15; Provisional 94.34
TIGR00698335 conserved hypothetical integral membrane protein. 94.02
PF01758187 SBF: Sodium Bile acid symporter family; InterPro: 93.01
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 92.81
TIGR00930953 2a30 K-Cl cotransporter. 91.88
PF03956191 DUF340: Membrane protein of unknown function (DUF3 91.71
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 90.52
TIGR00210398 gltS sodium--glutamate symport carrier (gltS). 90.22
TIGR03136399 malonate_biotin Na+-transporting malonate decarbox 90.17
TIGR00698335 conserved hypothetical integral membrane protein. 89.83
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 88.98
TIGR00832328 acr3 arsenical-resistance protein. The first prote 88.51
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 87.52
PF03977360 OAD_beta: Na+-transporting oxaloacetate decarboxyl 87.45
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 85.92
TIGR00808254 malonate_madM malonate transporter, MadM subunit. 85.48
COG0798342 ACR3 Arsenite efflux pump ACR3 and related permeas 85.1
PRK03818552 putative transporter; Validated 85.01
PRK10490 895 sensor protein KdpD; Provisional 84.89
PF06826169 Asp-Al_Ex: Predicted Permease Membrane Region; Int 84.52
TIGR00946321 2a69 he Auxin Efflux Carrier (AEC) Family. 83.95
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 83.49
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 83.31
PRK04288232 antiholin-like protein LrgB; Provisional 83.11
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 82.49
COG1346230 LrgB Putative effector of murein hydrolase [Cell e 82.29
COG2985544 Predicted permease [General function prediction on 81.72
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.8e-151  Score=1354.46  Aligned_cols=743  Identities=41%  Similarity=0.752  Sum_probs=669.0

Q ss_pred             ccccccccccccccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhhhee---e---------------
Q 046529           18 ACYYANSSGTIRIWRNHDQFNFPSYAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILE---M---------------   79 (799)
Q Consensus        18 ~c~~~~~~~~~g~~~~~~p~~~~~~l~~~l~qi~lil~~s~~~~~ll~rl~~P~ivg~Ila---l---------------   79 (799)
                      +|+.+++.+|+|+|+|+||++|  ++|++++|+++++++++++++++||+|||+++|||++   +               
T Consensus        18 ~c~~~~~~~s~g~~~g~~pl~~--~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~   95 (832)
T PLN03159         18 VCYAPMMITTNGIWQGDNPLDF--SLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTI   95 (832)
T ss_pred             ccccCCCccCCcccccCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhc
Confidence            5997667899999999999999  9999999999999999999999999999999999999   3               


Q ss_pred             ccCCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhHHHH
Q 046529           80 FPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGE-SQEFITQGGYMF  158 (799)
Q Consensus        80 ~p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~-~~~~~~~~~~l~  158 (799)
                      ||.++.+.+++++++|++|+||++|+|+|++.+|+++  |+++.+|+.++++|+++|++++++++.. .... ....+++
T Consensus        96 fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~--k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~-~~~~~l~  172 (832)
T PLN03159         96 FPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTG--KKALAIAIAGMALPFCIGLAFSFIFHQVSRNVH-QGTFILF  172 (832)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-hhHHHHH
Confidence            3334456899999999999999999999999999999  9999999999999999999888877431 1111 1346789


Q ss_pred             HHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhC---C--hHHHHHHHHHHHHHHHHHHH
Q 046529          159 CAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSN---P--SQYYEVLSTVGFILICVVVV  233 (799)
Q Consensus       159 l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~---~--~~~~~~~~~~~~~~~~~~v~  233 (799)
                      +|+++|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++.++..   +  ..+|.++..++|++++++++
T Consensus       173 ~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~  252 (832)
T PLN03159        173 LGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVV  252 (832)
T ss_pred             HHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998876643   1  45577777788888999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhH
Q 046529          234 RPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPG  313 (799)
Q Consensus       234 r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPl  313 (799)
                      ||++.|+.|+++++ ++.++.++.+++++++++++++|.+|+|+++|||++|+++|+ +|+++++.+|++++++++|+|+
T Consensus       253 r~~~~~~~r~~~~~-~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPl  330 (832)
T PLN03159        253 RPGIWWIIRRTPEG-ETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPL  330 (832)
T ss_pred             HHHHHHHHHhCcCC-CCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988 888999999999999999999999999999999999999995 7899999999999999999999


Q ss_pred             HHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCC
Q 046529          314 FFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLV  393 (799)
Q Consensus       314 FF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~  393 (799)
                      ||+++|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++||+||+++++++++|++.|+++
T Consensus       331 FFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~  410 (832)
T PLN03159        331 FFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLD  410 (832)
T ss_pred             HHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccC
Confidence            99999999999888665456667788888999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccCCCCccceEEEEeecCCChHHHHHHHHhhccCCCCCce
Q 046529          394 DEAFPPTIFALFVMTCVIEPILAATYKATKQFMNYKCRTIQRTKEKAEFRIMACIHSTRNIAGMINLLQVSNATNQSAIH  473 (799)
Q Consensus       394 ~~~f~~lv~~~lv~t~i~~plv~~ly~~~~~~~~~~~r~i~~~~~~~e~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~  473 (799)
                      ++.|++++++++++|++++|+++++|+|+||+..|++|++|+.++++|+|||+|+|+++|++++++|+|++++++++|++
T Consensus       411 ~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~  490 (832)
T PLN03159        411 DESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPIC  490 (832)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeccCCcchhhhhccCCCCCCCCCCCC---CcchhhHHHHHHHHHHHHhcCCceeEEEEEEecCCCChhHHHHH
Q 046529          474 VFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCP---MQATEAEQFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICC  550 (799)
Q Consensus       474 v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~  550 (799)
                      +|++||||+++|++|++++|+.+     ++...   ....++|+++++|++|++++ ++|+|+++|++|||++||+|||+
T Consensus       491 vy~lhLveL~~r~~~~l~~h~~~-----~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~mh~dIc~  564 (832)
T PLN03159        491 IYVLHLVELTGRASAMLIVHNTR-----KSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAISPYSTMHEDVCN  564 (832)
T ss_pred             EEEEEEEeecCCCccceeeeecc-----cccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEEeCcccHHHHHHH
Confidence            99999999999999999999862     11110   12345799999999999863 58999999999999999999999


Q ss_pred             HHHhcCccEEEEccCCCcccCCcccccc-ccHHHHHhhhccCCCceEEEEcCCCCCCcccccccccccccceEEEeccCC
Q 046529          551 LAEDKRVAFIIIPYIRPLTTNDKIRNAN-TNRTVNLNLLQNTPCSVCIFVDRGLGSDEDKESQLKDHHGIQHLLMLFLGG  629 (799)
Q Consensus       551 ~A~e~~a~lIIlp~h~~~~~dg~~~~~~-~~~~vn~~Vl~~ApCsVgIlvdRg~~~~~~~~~~~~~~~~~~~I~v~f~GG  629 (799)
                      +|+||++|+||+||||+|+.||++++.+ .+|.+|+|||++||||||||||||.++..+. +.....+   ||+++|+||
T Consensus       565 ~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~-~~~~~~~---~v~~~F~GG  640 (832)
T PLN03159        565 LAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRL-ASNQVSH---HVAVLFFGG  640 (832)
T ss_pred             HHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccc-cccccce---eEEEEecCC
Confidence            9999999999999999999999999888 9999999999999999999999997632222 2233344   999999999


Q ss_pred             cchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCcccc-c---cCC---cc-cc-ccchhhcHHHHHHHhhhhcCCCCCeE
Q 046529          630 PDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLH-Q---KHN---SE-VA-RCTEKQADDEDIYEFKFKTMNDESIS  700 (799)
Q Consensus       630 ~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~-~---~~~---~~-~~-~~~e~~~d~~~l~~~~~~~~~~~~v~  700 (799)
                      |||||||+||+|||+||++++||+||++.++..+... .   .++   .. .. .+.|+++||++++|||.++..++++.
T Consensus       641 ~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~  720 (832)
T PLN03159        641 PDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIV  720 (832)
T ss_pred             cchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceE
Confidence            9999999999999999999999999997543311000 0   011   11 11 26688999999999999998889999


Q ss_pred             EEEEEecChHHHHHHHHhhcCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEEeeecc
Q 046529          701 YIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYIS  779 (799)
Q Consensus       701 y~E~~v~~~~e~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVvqq~~~  779 (799)
                      |+||+|+||+||+++||+|.++|||+||||+|+.+|++|+||+  ||+||||||+|||+|||+||++++||||||||..
T Consensus       721 y~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~--~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~~  797 (832)
T PLN03159        721 YTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLT--DWSECPELGAIGDLLASSDFAATVSVLVVQQYVG  797 (832)
T ss_pred             EEEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhcccc--ccccCCccchhhhHHhcCCCCCceeEEEEEeecc
Confidence            9999999999999999999999999999999987899999999  9999999999999999999999999999999984

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 Back     alignment and domain information
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>TIGR00773 NhaA Na+/H+ antiporter NhaA Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH Back     alignment and domain information
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>COG3493 CitS Na+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PRK05274 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only] Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>TIGR00783 ccs citrate carrier protein, CCS family Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00210 gltS sodium--glutamate symport carrier (gltS) Back     alignment and domain information
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>TIGR00832 acr3 arsenical-resistance protein Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>TIGR00808 malonate_madM malonate transporter, MadM subunit Back     alignment and domain information
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03818 putative transporter; Validated Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters Back     alignment and domain information
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>PRK04288 antiholin-like protein LrgB; Provisional Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG2985 Predicted permease [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query799
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 69.5 bits (169), Expect = 3e-12
 Identities = 91/677 (13%), Positives = 189/677 (27%), Gaps = 214/677 (31%)

Query: 168 FQELTQILTDLRILH-LDIGRIALSSALLSDLF------TWMLLLACILVSNPSQYYEVL 220
           F++    + +       D+ +  LS   +  +       +  L L   L+S   +  +  
Sbjct: 25  FED--AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK- 81

Query: 221 STVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIG 280
               F+     V+R    ++  S I+ +       +   +       +I      ++   
Sbjct: 82  ----FV---EEVLRINYKFLM-SPIKTEQR--QPSMMTRM-------YIEQRDRLYNDNQ 124

Query: 281 AFT-LGVIMPKKQPITNTFKDKL-----DDFLVSSGLPGFFLLTGFRSNLV--VFSSHKP 332
            F    V   + QP     +  L        ++  G+ G     G ++ +   V  S+K 
Sbjct: 125 VFAKYNV--SRLQPYLK-LRQALLELRPAKNVLIDGVLGS----G-KTWVALDVCLSYK- 175

Query: 333 WMFVLVVLFGFGM----------SKILITFLVSLLHKIPP-------------------K 363
               +     F +           + ++  L  LL++I P                   +
Sbjct: 176 ----VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 364 EGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATK 423
             L   LL +      L+VL    N K     AF                          
Sbjct: 232 AEL-RRLLKSKPYENCLLVLLNVQNAKAW--NAF-------------------------- 262

Query: 424 QFMNYKCRTIQRTKEKAEFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHL 483
              N  C+ +  T              TR    + + L  +  T     H+   H    L
Sbjct: 263 ---NLSCKILL-T--------------TRF-KQVTDFLSAATTT-----HISLDHHSMTL 298

Query: 484 GHSTAMLLMNDGSNSTGFNDSC-PMQATE---------AEQFKKA---FENYEKTSNNAV 530
                  L+              P +            AE  +     ++N++  + + +
Sbjct: 299 TPDEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 531 NVHTLTSVSSHESMHEDICCLAEDKR--VAFIIIPYIRPLTTNDKIRNANTNRTVNLNLL 588
                +S++  E         AE ++      + P       +  I          L+L+
Sbjct: 356 TTIIESSLNVLEP--------AEYRKMFDRLSVFPP------SAHI----PTIL--LSLI 395

Query: 589 ------QNTPCSVCIFVDRGLGSDEDKESQLKDHHGIQHLLMLFLGGPDDREAL------ 636
                  +    V       L   + KES +        + +      ++  AL      
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP----SIYLELKVKLENEYALHRSIVD 451

Query: 637 AYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIY-EFKFKTMN 695
            Y        +  +      P  D     H  H+ +     E+      ++ +F+F    
Sbjct: 452 HYNIPKTFDSDDLI-----PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF---- 502

Query: 696 DESISYIEN-VVNNGEEIVAAIKDLSDNCDL-----YIIGRREGAESRLTYDLSLDNLTN 749
                 +E  + ++     A+   L+    L     YI       ++   Y+  ++ + +
Sbjct: 503 ------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC------DNDPKYERLVNAILD 550

Query: 750 FPELGVIGSVLAMSNFS 766
           F  L  I   L  S ++
Sbjct: 551 F--LPKIEENLICSKYT 565
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query799
1zcd_A388 Na(+)/H(+) antiporter 1; membrane protein; 3.45A { 99.91
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.63
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.58
3olq_A319 Universal stress protein E; structural genomics, P 99.57
3loq_A294 Universal stress protein; structural genomics, PSI 99.56
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.51
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 98.78
3s3t_A146 Nucleotide-binding protein, universal stress PROT 98.75
3fdx_A143 Putative filament protein / universal stress PROT; 98.74
3dlo_A155 Universal stress protein; unknown function, struct 98.72
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 98.71
3tnj_A150 Universal stress protein (USP); structural genomic 98.7
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 98.67
2z08_A137 Universal stress protein family; uncharacterized c 98.63
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 98.62
3fg9_A156 Protein of universal stress protein USPA family; A 98.62
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 98.58
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 98.52
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 98.37
3s3t_A146 Nucleotide-binding protein, universal stress PROT 98.29
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 98.27
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 98.26
3dlo_A155 Universal stress protein; unknown function, struct 98.26
3fdx_A143 Putative filament protein / universal stress PROT; 98.14
2z08_A137 Universal stress protein family; uncharacterized c 98.14
1q77_A138 Hypothetical protein AQ_178; structural genomics, 98.13
3tnj_A150 Universal stress protein (USP); structural genomic 98.11
3mt0_A290 Uncharacterized protein PA1789; structural genomic 98.11
3fg9_A156 Protein of universal stress protein USPA family; A 98.05
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 98.05
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 98.04
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 98.01
3olq_A319 Universal stress protein E; structural genomics, P 97.98
3loq_A294 Universal stress protein; structural genomics, PSI 97.96
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 97.88
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 97.7
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 97.68
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 97.67
1q77_A138 Hypothetical protein AQ_178; structural genomics, 97.6
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 97.58
3g40_A294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 95.63
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A Back     alignment and structure
Probab=99.91  E-value=1.2e-24  Score=237.28  Aligned_cols=303  Identities=17%  Similarity=0.162  Sum_probs=218.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChHHH----HhcCCCc--hhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHH
Q 046529           86 MLLETYAYIALLFYLFLIGLDMDINLI----SATGMTN--KVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFC  159 (799)
Q Consensus        86 ~~l~~la~lGli~~lFl~Gle~d~~~l----~~~~~~~--~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l  159 (799)
                      +....+.+-.+.+|||.+|+|+|.+.+    ++.+  |  .+...++.|+++|++++..    +..+      ...+...
T Consensus        58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~--~a~~p~~aAlgGmivP~~iy~~----~~~~------~~~~~~g  125 (388)
T 1zcd_A           58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLR--QAAFPVIAAIGGMIVPALLYLA----FNYA------DPITREG  125 (388)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTT--TSHHHHHHHHHHTTTTHHHHGG----GCCS------STTHHHH
T ss_pred             cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhh--hHHHHHHHHHHHHHHHHHHHHH----HhcC------Chhhhhh
Confidence            456677788889999999999999877    5555  4  3788899999999987422    2221      1234455


Q ss_pred             HHHHhhccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529          160 AVALTATNFQELTQILTDLRI-LHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALS  238 (799)
Q Consensus       160 ~~~ls~Ts~pvv~~iL~elkl-~~s~~g~lals~a~v~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~  238 (799)
                      ..+.+.|+.+....++..++. .++..++.+++.|++||+.+|++++++++  .+...+.+...++++++.         
T Consensus       126 w~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt--~~~~~~~l~~~~~~~~~~---------  194 (388)
T 1zcd_A          126 WAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT--NDLSMASLGVAAVAIAVL---------  194 (388)
T ss_dssp             TSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC--CCCCHHHHHHHHHHHHHH---------
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHHHHHHH---------
Confidence            566777888888899998755 45667799999999999999999998864  221121222111121111         


Q ss_pred             HHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC----CchhHHHHHHhhhhhhhhhhHH
Q 046529          239 WVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQ----PITNTFKDKLDDFLVSSGLPGF  314 (799)
Q Consensus       239 ~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~----~~~~~l~~kl~~~~~~l~lPlF  314 (799)
                      ++.+|.  +   .+....+.++ . +++.+.++..|+|+++|+|++|+++|+.+    +..+++++++++++..+++|+|
T Consensus       195 ~~l~r~--~---v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlF  267 (388)
T 1zcd_A          195 AVLNLC--G---ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLF  267 (388)
T ss_dssp             HHHHHT--T---CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHh--c---chhHHHHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            222332  1   3333344433 2 24456779999999999999999999743    4578999999999999999999


Q ss_pred             -HHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhhhhHHHHHH
Q 046529          315 -FLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLH----------KIPPKEGLALGLLMNTKGLLALIVL  383 (799)
Q Consensus       315 -F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG~v~l~~~  383 (799)
                       |+..|+++|...+... .-.....+++..+++|++|++..++..          |++|+|...+|++++.+++++++++
T Consensus       268 aFanaGv~l~~~~~~~l-~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia  346 (388)
T 1zcd_A          268 AFANAGVSLQGVTLDGL-TSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIA  346 (388)
T ss_dssp             HHHHCCCCCSSSCCCTH-HHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHH
T ss_pred             HHHhcCeeecccchhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHH
Confidence             9999999997533221 111223555566899999966666665          9999999999999999999999999


Q ss_pred             hhhccCCC--CCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 046529          384 NTACNRKD--LVDEAFPPTIFALFVMTCVIEPILAATY  419 (799)
Q Consensus       384 ~~~~~~~i--i~~~~f~~lv~~~lv~t~i~~plv~~ly  419 (799)
                      +++++.+.  +.++.+..+++++++++.+.+.++++.+
T Consensus       347 ~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~  384 (388)
T 1zcd_A          347 SLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL  384 (388)
T ss_dssp             HHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred             HHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99998876  3556688888888886666665655443
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query799
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 98.92
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 98.87
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 98.64
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 98.57
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 98.56
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 98.32
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 98.15
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 98.14
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 98.08
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 98.05
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 97.97
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 96.83
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.92  E-value=6.8e-09  Score=97.67  Aligned_cols=147  Identities=15%  Similarity=0.166  Sum_probs=94.7

Q ss_pred             ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCC-Cc-------chhhH
Q 046529          442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCP-MQ-------ATEAE  513 (799)
Q Consensus       442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~  513 (799)
                      -|||+|++..+....+++.+..++...+  ..++++|+++............... ......... ..       ..+.+
T Consensus         4 ~~ILvavD~s~~s~~al~~a~~la~~~~--a~l~llhV~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1mjha_           4 KKILYPTDFSETAEIALKHVKAFKTLKA--EEVILLHVIDEREIKKRDIFSLLLG-VAGLNKSVEEFENELKNKLTEEAK   80 (160)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTCCSSC--CEEEEEEEEEGGGTC------------------CHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHHHHHhcC--CEEEEEEeccccccccccccccccc-ccccchhHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999888886655  4679999998765432211110000 000000000 00       11122


Q ss_pred             HHHHHHHHHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCC
Q 046529          514 QFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPC  593 (799)
Q Consensus       514 ~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApC  593 (799)
                      +.++.+..-.+.  .++.++......   +..+.||+.|++.++|+|+||.|++....+.+     ++++.++|++++||
T Consensus        81 ~~l~~~~~~~~~--~gv~~~~~~~~G---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~-----~GS~a~~vl~~s~~  150 (160)
T d1mjha_          81 NKMENIKKELED--VGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL-----LGSVTENVIKKSNK  150 (160)
T ss_dssp             HHHHHHHHHHHH--TTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS-----SCHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHh--cCCeEEEEEEec---cHHHHHhhhhhccccceEEeccCCCCcccccc-----cCcHHHHHHhcCCC
Confidence            223322222222  567777777665   78999999999999999999999876655554     68889999999999


Q ss_pred             ceEEEEcC
Q 046529          594 SVCIFVDR  601 (799)
Q Consensus       594 sVgIlvdR  601 (799)
                      ||-|+..+
T Consensus       151 pVlvV~~~  158 (160)
T d1mjha_         151 PVLVVKRK  158 (160)
T ss_dssp             CEEEECCC
T ss_pred             CEEEEcCC
Confidence            99765433
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure