Citrus Sinensis ID: 046581

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
Protein Sequence
MEAAAARGGGGGGGGGGGGSGNTSFRYQNLQQNNKPHHQVYRPSPPLTAIDRFLWGQNNCSQQQQQQTQNIARNNKERVISLCAFSSTSGASTAAAYGGQHEALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYKEGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEKQKGNKNKPQSSVLQDYIRSKNSSNNSPTCSTFSEDPSIHDHHDHDHFNYLLPELSESTTDDSPPLIAETYDEELSFMQNYFPSSNFNQPPIEQHYNDHHQHQQLTDVTNQAVQAVEPPAAATNMYSDLYLSCLLNGTTISSSTECGHGYNINDMNMYLQQQQQHGVDHEMQEMDLMEMVSSSQFFN
Secondary Structure (PSIPRED)
cHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccHHHHHHccccccccccHHHHHHHHHHHHHHHHccccHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccccccccccccccccHHHcccccccccccccccccHHHHHHHcccccccHHccccccccccccccEEEEcEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
meaaaarggggggggggggsgnTSFRYQNlqqnnkphhqvyrpsppltaidrflwgqnncsqQQQQQTQNIARNNKERVISLcafsstsgastaaayggqhealrtstttttleptsfvdgffadgtandqsliNWSYDIIYKEgsksacnnnkgmighkrsnkkGASVALIkgqwtdeeDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHnhlrpdikkdswsEEEERILVEAHARIGNRWAEIAkhipgrtensIKNHWNATKRRQNsrrknkqnekqkgnknkpqssVLQDYIrsknssnnsptcstfsedpsihdhhdhdhfnyllpelsesttddsppliaeTYDEELSFMqnyfpssnfnqppieqhyndhhqhqqltdVTNQAvqaveppaaatnMYSDLYLSCLlngttissstecghgynindMNMYLQQQQQHGVDHEMQEMDLMEMVSSSQFFN
Flexible Loop (DISEMBL)
meaaaargggggggggggGSGNTSFRYQNLQQNNKPHHQVYRPSPPLTAIDRFLWGQNNCSQQQQQQTQNIARNNKERVISLCAFSSTSGASTAAAYGGQHEALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYKEGSKSACNNNKGMighkrsnkkgaSVALIkgqwtdeedrkLIKLVkqygvrkwaqisERMAgragkqcrerwhnhlrpdikkdswseEEERILVEAHARIGNRWAEiakhipgrtensiknhwnatkrrqnsrrknkqnekqkgnknkpqssvLQDYIRSKNSSNNSPTCSTFSEDPSIHDHHDHDHFNYLLPELSESTTDDSPPLIAETYDEELSFMQNYFPSSNFNQPPIEQHYNDHHQHQQLTDVTNQAVQAVEPPAAATNMYSDLYLSCLLNGTTISSSTECGHGYNINDMNMYLQQQQQHGVDHEMQEMDLMEMVSSSQFFN
Low Complexity Region (SEG)
MEAAAARggggggggggggsgNTSFRYQNLQQNNKPHHQVYRPSPPLTAIDRFLWGqnncsqqqqqqtqniarnnKERVISLCAFsstsgastaaayggQHEALRtstttttLEPTSFVDGFFADGTANDQSLINWSYDIIYKEGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATkrrqnsrrknkqnekqkgnknkpqSSVLQDYIRSKNSSNNSPTCSTFSEDPSIhdhhdhdhFNYLLPELSESTTDDSPPLIAETYDEELSFMQNYFPSSNFNQPPIEQHYNDHHQHQQLTDVTNqavqaveppaaaTNMYSDLYLSCLLNGTTISSSTECGHGYNINDMNMYLQQQQQHGVDHEMQEMDLMEMVSSSQFFN
Disordered region (IsUnstruct)
**********************************************LTAIDRFLWGQN********************VISLCAFS***********************TTTLEPTSFVDGFFADGTANDQSLINWSYDIIYKEG**********************SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR************ERILVEAHARIGNRWAEIAKHIP****************************************************************************NYL********************************************************************AAATNMYSDLYLSCLLNGTTISSSTECGHGYNINDMNMYL****************************
Disordered Region (DISOPRED)
**************************YQNL**********************F************************************************************************************************************************GQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT*********************************************************************************************************************************************************************************************LMEMVSSSQFF*
Disordered Region (DISEMBL)
*****************GGSGNTSFRYQNLQQNNKPHHQVYRPSPPLTAIDRFLWGQN*************ARNNKERVISLCAFSST**********GQHEALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYKEGSKSACNNNKGMIG**********VALIKGQWTDEEDRKLIKLVKQYGVRKWAQISE**********RERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWN****************************VLQDYIR***************EDPSIHDHHDHDHFNYLLPELSESTTDDSPPLIAETYDEELSFMQNYFPSSNFNQPPIEQHYNDHHQHQQLTDVTNQAVQAVEPPAAATNMYSDLYLSCLLNGTTISSSTECGHGYNINDMNMYLQQQQQHGVDHEMQEMDLMEMVSSSQFFN
Disordered Region (DISPRO)
************************FRYQN**QNNKPHHQVYRPSPPLTAIDRFLWGQNNCSQQQQQQTQNIARNNKERVISLCAFSS***********************************FADGTANDQSLINWSYDIIYKEGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRR*NS***************************************************************************************************************************************D*YL*******************************************D****V*SS*FFN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEAAAARGGGGGGGGGGGGSGNTSFRYQNLQQNNKPHHQVYRPSPPLTAIDRFLWGQNNCSQQQQQQTQNIARNNKERVISLCAFSSTSGASTAAAYGGQHEALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYKEGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEKQKGNKNKPQSSVLQDYIRSKNSSNNSPTCSTFSEDPSIHDHHDHDHFNYLLPELSESTTDDSPPLIAETYDEELSFMQNYFPSSNFNQPPIEQHYNDHHQHQQLTDVTNQAVQAVEPPAAATNMYSDLYLSCLLNGTTISSSTECGHGYNINDMNMYLQQQQQHGVDHEMQEMDLMEMVSSSQFFN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	470	2.2.26 [Sep-21-2011]
Q9S7L2	427	Transcription factor MYB9	no	no	0.285	0.313	0.633	6e-50
P52550	757	Myb-related protein A OS=	yes	no	0.310	0.192	0.469	1e-40
P51960	751	Myb-related protein A OS=	yes	no	0.257	0.161	0.550	3e-40
P10243	752	Myb-related protein A OS=	yes	no	0.257	0.160	0.550	3e-40
Q08759	624	Transcriptional activator	N/A	no	0.297	0.224	0.513	1e-39
P10242	640	Transcriptional activator	no	no	0.217	0.159	0.640	2e-39
P46200	640	Transcriptional activator	no	no	0.217	0.159	0.640	2e-39
P06876	636	Transcriptional activator	no	no	0.219	0.161	0.640	2e-39
Q05935	728	Myb-related protein A OS=	N/A	no	0.231	0.149	0.633	3e-39
P01103	641	Transcriptional activator	no	no	0.219	0.160	0.640	3e-39

>sp|Q9S7L2|MYB98_ARATH Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1

 Score =  199 bits (505), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 90/142 (63%), Positives = 112/142 (78%), Gaps = 8/142 (5%)

Query: 164 KKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDI 223
           K+     L+KGQWT EEDR LI+LV++YG+RKW+ I++ + GR GKQCRERWHNHLRPDI
Sbjct: 208 KETKKSTLVKGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLPGRIGKQCRERWHNHLRPDI 267

Query: 224 KKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNE 283
           KK++WSEEE+R+L+E H  IGN+WAEIAK +PGRTENSIKNHWNATKRRQ S+RK +   
Sbjct: 268 KKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRS-- 325

Query: 284 KQKGNKNKPQSSVLQDYIRSKN 305
                   P+ S+LQDYI+S N
Sbjct: 326 ------KYPRPSLLQDYIKSLN 341

Transcription factor. Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte. Involved in pollen tube guidance to the micropyle.
Arabidopsis thaliana (taxid: 3702)

>sp|P52550|MYBA_CHICK Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 108/166 (65%), Gaps = 20/166 (12%)

Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
           LIKG WT EED+++I+LV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 85  LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 144

Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEKQKGNKN 290
            E+R++ EAH R+GNRWAEIAK +PGRT+NSIKNHWN+T RR+                 
Sbjct: 145 AEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVE--------------- 189

Query: 291 KPQSSVLQDYIRSKNSSNNSPTCSTFSEDPSIHDHHDHDHFNYLLP 336
             Q   LQD  +S +    S   ST ++ P +   H H    + +P
Sbjct: 190 --QEGYLQDGTKSSSERTGS---STLAQKPCVTMEHLHTQNQFYIP 230

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Gallus gallus (taxid: 9031)

>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2

 Score =  166 bits (420), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/138 (55%), Positives = 101/138 (73%), Gaps = 17/138 (12%)

Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
           LIKG WT EED+++I+LV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 85  LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 144

Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEKQKGNKN 290
           EE+RI+ EAH R+GNRWAEIAK +PGRT+NSIKNHWN+T RR+                 
Sbjct: 145 EEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVE--------------- 189

Query: 291 KPQSSVLQDYIRSKNSSN 308
             Q   LQD I+S+ SS+
Sbjct: 190 --QEGYLQDGIKSERSSS 205

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Mus musculus (taxid: 10090)

>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2

 Score =  166 bits (420), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/138 (55%), Positives = 101/138 (73%), Gaps = 17/138 (12%)

Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
           LIKG WT EED+++I+LV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 85  LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 144

Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEKQKGNKN 290
           EE+RI+ EAH R+GNRWAEIAK +PGRT+NSIKNHWN+T RR+                 
Sbjct: 145 EEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVE--------------- 189

Query: 291 KPQSSVLQDYIRSKNSSN 308
             Q   LQD I+S+ SS+
Sbjct: 190 --QEGYLQDGIKSERSSS 205

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Homo sapiens (taxid: 9606)

>sp|Q08759|MYB_XENLA Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1

 Score =  164 bits (416), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 105/144 (72%), Gaps = 4/144 (2%)

Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
           LIKG WT EED+++I+LV +YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 87  LIKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 146

Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEKQKGN-- 288
           EE+R + EAH R+GNRWAEIAK +PGRT+N+IKNHWN+T RR+  +    QN  +     
Sbjct: 147 EEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKEEQEGYLQNSSKTNQHT 206

Query: 289 --KNKPQSSVLQDYIRSKNSSNNS 310
              N P+S+ L  +  ++ S+ +S
Sbjct: 207 IVTNFPKSNHLMTFTHTRASAEHS 230

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Xenopus laevis (taxid: 8355)

>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 90/103 (87%)

Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
           LIKG WT EED+++I+LV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 90  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 149

Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273
           EE+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T RR+
Sbjct: 150 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Homo sapiens (taxid: 9606)

>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 90/103 (87%)

Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
           LIKG WT EED+++I+LV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 90  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 149

Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273
           EE+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T RR+
Sbjct: 150 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Bos taurus (taxid: 9913)

>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 90/103 (87%)

Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
           LIKG WT EED+++I+LV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 90  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 149

Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273
           EE+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T RR+
Sbjct: 150 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Mus musculus (taxid: 10090)

>sp|Q05935|MYBA_XENLA Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 90/109 (82%)

Query: 165 KGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIK 224
           K  S  L+KG WT EED+++I+LV +YG +KW+ I++ + GR GKQCRERWHNHL PD+K
Sbjct: 78  KVLSPELVKGPWTKEEDQRVIELVHKYGPKKWSIIAKHLKGRIGKQCRERWHNHLNPDVK 137

Query: 225 KDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273
           K SW+EEE+RI+  AH R+GNRWAEIAK +PGRT+NSIKNHWN+T +R+
Sbjct: 138 KSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRK 186

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Xenopus laevis (taxid: 8355)

>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 90/103 (87%)

Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
           LIKG WT EED+++I+LV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 90  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 149

Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273
           EE+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T RR+
Sbjct: 150 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
224104298	484	predicted protein [Populus trichocarpa]	0.870	0.845	0.47	6e-96
255569291	472	myb119, putative [Ricinus communis] gi|2	0.810	0.807	0.480	1e-93
224054556	490	predicted protein [Populus trichocarpa]	0.848	0.814	0.459	4e-87
297745927	461	unnamed protein product [Vitis vinifera]	0.840	0.856	0.410	3e-80
356569558	448	PREDICTED: uncharacterized protein LOC10	0.736	0.772	0.440	2e-77
449518505	371	PREDICTED: uncharacterized protein LOC10	0.602	0.762	0.537	4e-70
395146510	454	Myb-like DNA-binding domain protein [Lin	0.804	0.832	0.392	2e-68
116831625	431	unknown [Arabidopsis thaliana]	0.753	0.821	0.384	2e-65
18424163	430	myb domain protein 119 [Arabidopsis thal	0.753	0.823	0.384	2e-65
297835570	426	MYB119 [Arabidopsis lyrata subsp. lyrata	0.763	0.842	0.385	6e-64

>gi|224104298|ref|XP_002313387.1| predicted protein [Populus trichocarpa] gi|222849795|gb|EEE87342.1| predicted protein [Populus trichocarpa]

 Score =  357 bits (917), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 235/500 (47%), Positives = 296/500 (59%), Gaps = 91/500 (18%)

Query: 25  FRYQNLQQNNKPHHQVYRPSPPLTAIDRFLWGQNNCSQQQQQQTQNIARNNK--ERVIS- 81
           F +Q+LQ N      +Y+P+PPLTA DRFL+ Q++ +       QNI  ++K  E ++S 
Sbjct: 13  FSHQSLQNN----RSIYQPTPPLTATDRFLFCQSHYT------PQNIENDDKSKETLVSI 62

Query: 82  --LCAFSSTSGASTAAAYGGQHEALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYD 139
             LC FS  SGA  A  +              +   TSFVDG F DG +     +N +YD
Sbjct: 63  NGLCGFSPPSGAIGAVPW-------------QSFSETSFVDGLFVDGDS-----LNRAYD 104

Query: 140 IIYKEGSKSACNN--NKGMIGHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWA 197
                G     NN   K   G  +  KKG+   LIKGQWT+EEDRKLI+LVKQ+GVRKWA
Sbjct: 105 GNPNGGLSGEVNNVSGKSCKGMGKKTKKGSCATLIKGQWTEEEDRKLIRLVKQFGVRKWA 164

Query: 198 QISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGR 257
           QI+ER+AGRAGKQCRERWHNHLRPDIKKDSWSEEEE ILVEAH ++GNRWAEIAK IPGR
Sbjct: 165 QIAERVAGRAGKQCRERWHNHLRPDIKKDSWSEEEEIILVEAHTKVGNRWAEIAKLIPGR 224

Query: 258 TENSIKNHWNATKRRQNSRRKNKQNEKQKGNKNKPQSSVLQDYIRSKNSSN-----NSPT 312
           TEN+IKNHWNATKRRQNSRRK+KQ E Q G   KPQ S+LQDYIRSKN  N      S  
Sbjct: 225 TENAIKNHWNATKRRQNSRRKHKQTESQSG---KPQPSILQDYIRSKNLKNASTSVTSTQ 281

Query: 313 CSTFSEDPSIHDHHDHDHFNYLLPELSESTTDDSPPLIAETY-DEELSFMQNYF------ 365
            +T +   S         FNY LPELSES +DDSP L+A++  D+EL F+QN+F      
Sbjct: 282 STTTNTPSSSISEDPSSQFNYFLPELSESASDDSPSLLAQSCNDDELLFIQNFFGNKSKE 341

Query: 366 PSS--------------NFNQPPIEQHYNDHHQH-----QQLTDVTN------------- 393
           PSS              NFN        +    +     QQL D+++             
Sbjct: 342 PSSTDKVATENPTMEVDNFNADSFNDSLDSSGLYQNSGCQQLKDLSDNDFDISTLNPKLC 401

Query: 394 ----QAVQAVEPPAAATNMYSDLYLSCLLNGTT-ISSSTECGHGYNINDMNMYLQQQQQH 448
               QAV   + P    +++SDLYLS LLNG +    S+   +GY+  +M+M  +  Q H
Sbjct: 402 TNGFQAVTDQQTP-TYNHLHSDLYLSYLLNGASNAPGSSYTEYGYSSTNMDM--EMDQTH 458

Query: 449 GVDHEMQEMDLMEMVSSSQF 468
            ++ + +EMDL+EM+SSSQF
Sbjct: 459 PLNGK-KEMDLIEMISSSQF 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569291|ref|XP_002525613.1| myb119, putative [Ricinus communis] gi|223535049|gb|EEF36731.1| myb119, putative [Ricinus communis]

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 230/479 (48%), Positives = 286/479 (59%), Gaps = 98/479 (20%)

Query: 45  PPLTAIDRFLWGQNNCSQQQQQQTQNIARNNKERVIS---LCAFSSTSGASTAAAYGGQH 101
           PPLTA+DRFLWG+++ S Q   +       NKE ++S   L  FSS+SGA          
Sbjct: 28  PPLTAVDRFLWGRSHSSTQSNVK-------NKETLVSTNGLYEFSSSSGAIATGV----- 75

Query: 102 EALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYD----IIYKEGSKSACNNNKGMI 157
                 ++    +  +FVDG FADG  +      W+YD    + Y+E  K +    K   
Sbjct: 76  ------SSWPCFQEINFVDGLFADGDNHSY----WAYDTNPNVGYEEEVKVS---GKSSK 122

Query: 158 GHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHN 217
           G  +  KKG    LIKGQWT+EEDRKLI+LVKQ+GVRKWAQI+E++AGRAGKQCRERWHN
Sbjct: 123 GIGKKAKKGPCPTLIKGQWTEEEDRKLIRLVKQFGVRKWAQIAEKLAGRAGKQCRERWHN 182

Query: 218 HLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRR 277
           HLRPDIKK+SWSEEEERILVEAH+++GNRWAEIAK IPGRTEN+IKNHWNATKRRQNSRR
Sbjct: 183 HLRPDIKKESWSEEEERILVEAHSKVGNRWAEIAKLIPGRTENAIKNHWNATKRRQNSRR 242

Query: 278 KNKQNEKQKGNKNKPQSSVLQDYIRSKN--------------------SSNNSPTCSTFS 317
           K+KQ E Q G   KPQSS+LQDYI+SKN                    ++ N+P+ ST S
Sbjct: 243 KHKQTENQIG---KPQSSILQDYIKSKNLKTSSTGTTAITITPSQSTTTTINTPSSSTTS 299

Query: 318 EDPSIHDHHDHDHFNYLLPELSESTTDDSPPLIAETYDEELSFMQNYFPSSNFNQP--PI 375
           EDPS         F+Y LP+LSE T DDS      T D+EL F+QN+F  S    P  P 
Sbjct: 300 EDPS-------SQFSYFLPDLSEPTVDDS-----LTCDDELLFLQNFFTDSTIKNPKNPE 347

Query: 376 EQHYN-----DHHQH--------QQLTDVTNQ-------AVQAVEPP------AAATNMY 409
           E+  N     DHH +        QQ TD ++Q       ++  + P          +++Y
Sbjct: 348 EKETNSYNVVDHHHYLKSSIMDPQQFTDASDQCDFFSSNSIPKICPTDPQEEEKPTSHLY 407

Query: 410 SDLYLSCLLNGTTISSSTECGHGYNINDMNMYLQQQQQHGVDHEMQEMDLMEMVSSSQF 468
           SDLYLS LLNG T S S    +GY   D NM L+        +  +EMDL+EMVSSS F
Sbjct: 408 SDLYLSYLLNGATTSLSNSMDYGY---DNNMNLESVMNQTCSNGKKEMDLIEMVSSSHF 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054556|ref|XP_002298319.1| predicted protein [Populus trichocarpa] gi|222845577|gb|EEE83124.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 232/505 (45%), Positives = 293/505 (58%), Gaps = 106/505 (20%)

Query: 32  QNNKPHHQVYRPSPPLTAIDRFLWGQNNCSQQQQQQTQNIARNNKERVIS---LCAFSST 88
           QNN P+  +Y   PPLTA DRFL+GQ++ +  Q  Q  +    NKE  +S    C F   
Sbjct: 17  QNNCPN--IY---PPLTARDRFLFGQSHFTPHQNIQNND---KNKETTVSNNGSCGFYPP 68

Query: 89  SGASTAAAYGGQHEALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYKEGSKS 148
           SGA  A  +              +++ TSFVDG  A G   D   +NW+Y     EG+ +
Sbjct: 69  SGAIGAVPW-------------QSIQETSFVDG--AIGVGGDD--LNWTY-----EGNPN 106

Query: 149 ACNNNKGMIGHK------RSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISER 202
              N K  +  K      +  KKG+   LIKGQWT+EEDRKLI+LVKQ+GVRKWAQI+E+
Sbjct: 107 GGLNGKVSVSGKSYKGIGKKTKKGSCATLIKGQWTEEEDRKLIRLVKQFGVRKWAQIAEK 166

Query: 203 MAGRAGKQCRERWHNHLRPDIK---------KDSWSEEEERILVEAHARIGNRWAEIAKH 253
           + GRAGKQCRERWHNHLRPDIK         KDSWSEEEERI+V AHA++GNRWAEIAK 
Sbjct: 167 LDGRAGKQCRERWHNHLRPDIKVSSPFTSSRKDSWSEEEERIMVGAHAKVGNRWAEIAKL 226

Query: 254 IPGRTENSIKNHWNATKRRQNSRRKNKQNEKQKGNKNKPQSSVLQDYIRSKNSSN----N 309
           IPGRTEN+IKNHWNATKRRQNSRRK+KQ E + G   K QSS+LQDYIRSKN  N     
Sbjct: 227 IPGRTENAIKNHWNATKRRQNSRRKHKQKESKSG---KTQSSILQDYIRSKNLKNASTST 283

Query: 310 SPTCSTFSEDPSIHDHHDHDHFNYLLPELSESTTDDSPPLIAETY-DEELSFMQNYF--- 365
             T +T +   S          NY LPELSES TDDSP L+A+   D+EL F+QN+F   
Sbjct: 284 QSTTTTTNTPSSSISEEPSSQNNYFLPELSESNTDDSPSLLAQACSDDELMFIQNFFANK 343

Query: 366 ---PSS---NFNQPPIEQH------YND-----------HHQHQQLTDVTNQ--AVQAVE 400
              PS+   +   P +E +      +ND           ++  QQL +  N+   V +  
Sbjct: 344 SKDPSTDKADMENPIMEVNSFNADLFNDSLSLDSWGSYQNNGGQQLINDGNENGFVSSSL 403

Query: 401 PPAAATN--------------MYSDLYLSCLLNGTT---ISSSTECGHGYNINDMNMYLQ 443
            P   TN              ++SDLYLS LLNG +    SSSTE G+    N MN+ L+
Sbjct: 404 NPKLCTNGFQGAEDHTPPHNHLHSDLYLSYLLNGASSAPCSSSTEYGY----NSMNLDLE 459

Query: 444 QQQQHGVDHEMQEMDLMEMVSSSQF 468
             Q   ++ + +EMDL+EM+ SSQF
Sbjct: 460 MDQTDSLNGK-KEMDLIEMLCSSQF 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745927|emb|CBI15983.3| unnamed protein product [Vitis vinifera]

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 195/475 (41%), Positives = 266/475 (56%), Gaps = 80/475 (16%)

Query: 33  NNKPHHQVYRPSPPLTAIDRFLWGQNNCSQQQQQQTQNIARNNKERVISLCAFSSTSGAS 92
           N + HH VYRPSPPLTAIDRFL GQ++ SQ+Q   TQN  RN+ + V S           
Sbjct: 23  NFQSHHPVYRPSPPLTAIDRFLVGQSHFSQRQ---TQNSERNSGDVVSS----------- 68

Query: 93  TAAAYGGQHEALRTSTTTTTLEPTSFVDGFFADGT----ANDQSLINWSYDIIYKEGSKS 148
                 G H+    S    ++           DG          ++    + + K  S++
Sbjct: 69  -----NGFHDFYSASGAIGSIGSGGSWQFLEEDGLNLKEKKSSEVVQSGEEKVAKRSSRA 123

Query: 149 ACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAG 208
           +    KG          G+S  LIKGQW+ EEDR+L++LV ++G +KWAQI++++ GRAG
Sbjct: 124 SGKRAKG----------GSSATLIKGQWSAEEDRQLLRLVNEFGEKKWAQIAKKLGGRAG 173

Query: 209 KQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNA 268
           KQCRERWHNHLRPDI+KD W EEEERIL+E H ++GN+WAEIAK I GRTEN+IKNH+NA
Sbjct: 174 KQCRERWHNHLRPDIRKDEWDEEEERILIEWHKKVGNKWAEIAKRITGRTENTIKNHFNA 233

Query: 269 TKRRQNSRRKNKQNEKQKGNKNKPQSSVLQDYIRSKNSSNN------------SPTCSTF 316
           TKRRQ+SR+K+ ++++      KPQS++LQ YI+SK   +             +PT ST 
Sbjct: 234 TKRRQDSRKKSNKDDQ------KPQSTLLQVYIKSKKLDDKWTTTTTTQNATATPTSSTI 287

Query: 317 SED-PSIHDHHDHDHFNYLLPELSESTTDDSPPLIAETYDEELSFMQNYFPSSNFNQP-- 373
           SED P+        H+   L + SEST  DSP L+ +T DEEL FMQN F S   N P  
Sbjct: 288 SEDLPTT-------HYKAFLQDFSESTVHDSPSLMTQTCDEELLFMQNLFSSDCGNPPFV 340

Query: 374 -------------PIEQHYN---DHHQHQQLTDVTNQAVQAVEPPAAATNMYSDLYLSCL 417
                        PIE+  +   D     Q +        +++  A++T+++SD+Y+S L
Sbjct: 341 GTSENISSKGAEEPIEEQDDMALDSFDLFQASGSAECGSTSIQGKASSTHLHSDIYISNL 400

Query: 418 LNGTTISSSTECGH--GYNINDMNMYLQQQQQHGVDHEMQEMDLMEMVSSSQFFN 470
           LNGT+  SS    H   YNIN MN+            + +EMDL+EM+S S F N
Sbjct: 401 LNGTSTPSSASIDHYYSYNINPMNVEFLTDPPSSSSGK-REMDLIEMLSCSGFCN 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569558|ref|XP_003552966.1| PREDICTED: uncharacterized protein LOC100786295 [Glycine max]

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 198/449 (44%), Positives = 249/449 (55%), Gaps = 103/449 (22%)

Query: 45  PPLTAIDRFLWGQNNCSQQQQQQTQ-NIARNNKERVISLCAFSSTSGASTAAAYGGQHEA 103
           PP TAI+RFLWGQ       QQQTQ N+A N                   A+ +GG    
Sbjct: 38  PPFTAIERFLWGQ-------QQQTQYNVANNGH-----------------ASIFGGSTYK 73

Query: 104 LRTSTTTTTLEPTSFVDGF-FADGTANDQSLINWSYDIIYKEGSKSACNNNKGMIGHKRS 162
                  +T +  S+ +   FA+   N++  +NWS  + +KE  K    N   ++G  R 
Sbjct: 74  FMWPNNNSTTQEVSYAEQIIFAN---NNEEALNWSQQVCFKEDGK----NIAKVVG--RR 124

Query: 163 NKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222
            KKG+SV LIKGQWTDEEDRKL+KLVKQ+GVRKW+ I+E++ GRAGKQCRERWHNHLRPD
Sbjct: 125 PKKGSSVPLIKGQWTDEEDRKLLKLVKQHGVRKWSLIAEKLDGRAGKQCRERWHNHLRPD 184

Query: 223 IKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQN 282
           IKKDSWSEEEERILVE HA+IGNRWAEIAK IPGRTEN+IKNHWNATKRRQNSRRKNK+ 
Sbjct: 185 IKKDSWSEEEERILVETHAKIGNRWAEIAKCIPGRTENAIKNHWNATKRRQNSRRKNKRA 244

Query: 283 EKQKGNKNKPQSSVLQDYIRSKNSSNNSPTCSTFSEDPSIHDHHDHDHFNYLLPELSEST 342
               G   KPQ S+LQDYI+S     ++ T     +               + P+LS S 
Sbjct: 245 GTSNG---KPQPSILQDYIKSLTLITSTTTSPVEQQ---------------IAPQLSNSV 286

Query: 343 T-DDSPPLIAETYDEELSFMQNYFPSSNFNQPPIEQHYND-------------HHQH--- 385
           T +++  L+AE+YD+EL FMQ  F  +N N     +H  +             +HQ    
Sbjct: 287 TNNENSSLMAESYDDELLFMQQLFKENNANNVESLKHSKNIINNSSAASLDCYYHQTNYN 346

Query: 386 ---QQLTDVTNQAV--------------------------QAVEPPAAATNMYSD-LYLS 415
              Q LTDVT                              ++  P A    + SD +YLS
Sbjct: 347 GGGQLLTDVTQCGFVVHSNPNTTNSHHNNMCLDESLFISRKSTTPHAPINYLDSDHVYLS 406

Query: 416 CLLNGTTISSSTECGHGYNI-NDMNMYLQ 443
            LLNGT  + S+ C + Y + N  NM LQ
Sbjct: 407 HLLNGT--AGSSFCYNNYGVHNQNNMELQ 433

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518505|ref|XP_004166282.1| PREDICTED: uncharacterized protein LOC101224124 [Cucumis sativus]

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 174/324 (53%), Positives = 216/324 (66%), Gaps = 41/324 (12%)

Query: 164 KKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDI 223
           KK +S  LIKGQWT+EEDRKL +LVKQ+GVRKWAQI+E++ GRAGKQCRERWHNHLRPDI
Sbjct: 61  KKRSSANLIKGQWTEEEDRKLTRLVKQHGVRKWAQIAEKLEGRAGKQCRERWHNHLRPDI 120

Query: 224 KKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNE 283
           KK+SWSEEEERILVE HAR+GNRWAEIAK IPGRTEN+IKNHWNATKRRQNSRRKNK+  
Sbjct: 121 KKESWSEEEERILVETHARVGNRWAEIAKSIPGRTENAIKNHWNATKRRQNSRRKNKRPN 180

Query: 284 KQKGNKNKPQSSVLQDYIRSK---NSSNNSPTCSTFSEDPSIHDHHDHDHFNYLLPELSE 340
            Q G   KP SS+LQDYI+SK    +    PT STFS+DPS        HFN+   E S+
Sbjct: 181 SQNG---KPHSSILQDYIKSKYNPAAVTTVPT-STFSDDPS-------SHFNHFFSESSD 229

Query: 341 STTDDSPPLIAE-TYDEELSFMQNYF---------PSSN-----FNQPPIEQHYNDHHQH 385
           ST++ S  +I+  TYD+EL FMQN+F         PS++     +NQ  +E    D  + 
Sbjct: 230 STSNLSSAIISSPTYDDELLFMQNFFSNSSDLLSLPSADDGASMWNQSTVEFGSVDSERK 289

Query: 386 QQLTDVTNQAVQAVEPPAAATNMYSDLYLSCLLNGTTISSSTECGHGYNINDM-NMYLQQ 444
            +     +  +      A ++++ SD+YLS LLNGT  +S   CG G  I +M  + +  
Sbjct: 290 AERPKTGDDGINV----ATSSHLCSDMYLSYLLNGTMNNS---CGGGGEIQNMAELQVMA 342

Query: 445 QQQHGVDHEMQ----EMDLMEMVS 464
               G+    Q    EMDLMEM+S
Sbjct: 343 AAGEGLWENSQQVKKEMDLMEMLS 366

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395146510|gb|AFN53665.1| Myb-like DNA-binding domain protein [Linum usitatissimum]

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 183/466 (39%), Positives = 246/466 (52%), Gaps = 88/466 (18%)

Query: 40  VYRP-SPPLTAIDRFLWGQNNCSQQQQQQTQNIARNNKERVISLCAFSSTSGASTAAAYG 98
           +YRP  PP+TAIDRFLWG                       + +    +   A+    YG
Sbjct: 36  LYRPIPPPITAIDRFLWGSAGSHSSTHHH------------VPITKQPAIVAAANELLYG 83

Query: 99  GQHEALRTSTTTTTLEPTSFVDGFFADGTANDQSL---INWSYDIIY------------- 142
           G                    DG F +       L   ++W+++ +              
Sbjct: 84  GG-------------------DGGFNNYNRTAAPLAVDLDWTWERLMMNMRNRNPNDVAA 124

Query: 143 -KEGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISE 201
            +EG+     N        +  +     ALIKGQWT++EDRKLI+LVKQ+G+RKWA+I++
Sbjct: 125 AREGTMKKKKNTNKGSVVVKKRQSSCYAALIKGQWTEDEDRKLIRLVKQFGIRKWAEIAQ 184

Query: 202 RMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENS 261
           R++GRAGKQCRERWHNHLRPDIKK+ WSEEEERI+V+AHA+IGNRWAEIAK IPGRTEN+
Sbjct: 185 RLSGRAGKQCRERWHNHLRPDIKKEGWSEEEERIMVDAHAKIGNRWAEIAKLIPGRTENA 244

Query: 262 IKNHWNATKRRQNSRRKNKQNEKQKGNKN------KPQ---SSVLQDYIRSKN-SSNNSP 311
           IKNHWNATKRRQNSRRK+ +++  + + N      KPQ   SS+LQDYIRSK    N  P
Sbjct: 245 IKNHWNATKRRQNSRRKHPKSKSTEASTNVTNGAVKPQSSSSSILQDYIRSKTLQLNQQP 304

Query: 312 TCSTFSEDPSIHDHHDHDHFNYLLPELSESTTDDSPPLIAETYDEELSFMQNYFPSSNFN 371
             ++ +   +            LLP LSES             DEEL FMQN F S    
Sbjct: 305 NTTSATPSSTSSRGDGDGDGGSLLPSLSES-------------DEELLFMQNLFAS---- 347

Query: 372 QPPIEQHYNDHHQHQQ--LTDVTNQAVQAVEPPAAATN------MYSDLYLSCLLNG--T 421
           +P    H +D +   Q    +     V+     AA ++      +YSDLY+S LLNG  +
Sbjct: 348 KPSDAGHVDDSNGRDQPGFINAGGMIVRDCSHHAATSSRHGHHHLYSDLYVSYLLNGGAS 407

Query: 422 TISSSTECGHGYNINDMNMYLQQ-QQQHGVDHEMQEMDLMEMVSSS 466
             SSS  C      +   + L+    +HG  ++ +EMDL+EM+SS+
Sbjct: 408 YASSSASCDADKAEDGGMVSLEMIDHRHGGSNK-KEMDLIEMLSST 452

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831625|gb|ABK28765.1| unknown [Arabidopsis thaliana]

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 187/486 (38%), Positives = 237/486 (48%), Gaps = 132/486 (27%)

Query: 40  VYRPSPPLTAIDRFLWGQNN---CSQQQQQ-QTQNIARNNKERVISLCAFSSTSGASTAA 95
           V+  +PPLTA++RFL+GQ N   CS++Q+  + Q I +      IS+   S     +T  
Sbjct: 7   VHGAAPPLTAVERFLYGQKNDALCSKKQESSRDQPIVKTK----ISIETRSDNKENTTFG 62

Query: 96  AYGGQHEALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYKEGSKSACNNNKG 155
               +H  L       T E         A   A D                         
Sbjct: 63  PTREKHLVLNGGNRNPTGE-------VVARSAARD------------------------- 90

Query: 156 MIGHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERW 215
              ++ S KK +S  LIKGQWT EEDRKLI+LV+Q+G RKWA ISE++ GRAGKQCRERW
Sbjct: 91  ---YQNSTKKRSSKNLIKGQWTAEEDRKLIRLVRQHGERKWAMISEKLEGRAGKQCRERW 147

Query: 216 HNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNS 275
           HNHLRPDIKKD WSEEEER+LVE+H RIGN+WAEIAK IPGRTENSIKNHWNATKRRQNS
Sbjct: 148 HNHLRPDIKKDGWSEEEERVLVESHMRIGNKWAEIAKLIPGRTENSIKNHWNATKRRQNS 207

Query: 276 RRKNKQ-----NEKQKGNKNKPQSSVLQDYIRSKNSSN---------NSPTCSTFSEDPS 321
           +RK+K+     N  +  + +  +  +LQDYI+S   +N         N  T S  S    
Sbjct: 208 KRKHKRESNADNNDRDASPSAKRPCILQDYIKSIERNNINKDNDEKKNENTISVIS---- 263

Query: 322 IHDHHDHDHFNYLLPELSE--STTDDSPPLIAETYDEELSFMQNYFP------------- 366
                         P L +  S  D +  ++   YDEEL + QN F              
Sbjct: 264 -------------TPNLDQIYSDGDSASSILGGPYDEELDYFQNIFANHPISLENLGLSQ 310

Query: 367 ---------SSNF----NQPPIEQHYNDHHQHQQLTDVTNQAVQAVEPPAAATNMYSDLY 413
                    SS F      P +      HHQ   +T            PA   ++ SD+Y
Sbjct: 311 TSDEVTQSSSSGFMIKNPNPNLHDSVGIHHQEATIT-----------APANTPHLASDIY 359

Query: 414 LSCLLNGTTISSS-------------TECGHGYNINDMNMYLQQQQQHGVDHEMQEMDLM 460
           LS LLNGTT S S             T   HG +    N +L+ Q       E +EMDL+
Sbjct: 360 LSYLLNGTTSSYSDTHFPSSSSSTSSTTVEHGGH----NEFLEPQANST--SERREMDLI 413

Query: 461 EMVSSS 466
           EM+S S
Sbjct: 414 EMLSGS 419

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424163|ref|NP_568891.1| myb domain protein 119 [Arabidopsis thaliana] gi|14161417|gb|AAK54741.1|AF371978_1 putative transcription factor MYB119 [Arabidopsis thaliana] gi|9759218|dbj|BAB09630.1| unnamed protein product [Arabidopsis thaliana] gi|91807066|gb|ABE66260.1| myb family transcription factor [Arabidopsis thaliana] gi|332009727|gb|AED97110.1| myb domain protein 119 [Arabidopsis thaliana]

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 187/486 (38%), Positives = 237/486 (48%), Gaps = 132/486 (27%)

Query: 40  VYRPSPPLTAIDRFLWGQNN---CSQQQQQ-QTQNIARNNKERVISLCAFSSTSGASTAA 95
           V+  +PPLTA++RFL+GQ N   CS++Q+  + Q I +      IS+   S     +T  
Sbjct: 7   VHGAAPPLTAVERFLYGQKNDALCSKKQESSRDQPIVKTK----ISIETRSDNKENTTFG 62

Query: 96  AYGGQHEALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYKEGSKSACNNNKG 155
               +H  L       T E         A   A D                         
Sbjct: 63  PTREKHLVLNGGNRNPTGE-------VVARSAARD------------------------- 90

Query: 156 MIGHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERW 215
              ++ S KK +S  LIKGQWT EEDRKLI+LV+Q+G RKWA ISE++ GRAGKQCRERW
Sbjct: 91  ---YQNSTKKRSSKNLIKGQWTAEEDRKLIRLVRQHGERKWAMISEKLEGRAGKQCRERW 147

Query: 216 HNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNS 275
           HNHLRPDIKKD WSEEEER+LVE+H RIGN+WAEIAK IPGRTENSIKNHWNATKRRQNS
Sbjct: 148 HNHLRPDIKKDGWSEEEERVLVESHMRIGNKWAEIAKLIPGRTENSIKNHWNATKRRQNS 207

Query: 276 RRKNKQ-----NEKQKGNKNKPQSSVLQDYIRSKNSSN---------NSPTCSTFSEDPS 321
           +RK+K+     N  +  + +  +  +LQDYI+S   +N         N  T S  S    
Sbjct: 208 KRKHKRESNADNNDRDASPSAKRPCILQDYIKSIERNNINKDNDEKKNENTISVIS---- 263

Query: 322 IHDHHDHDHFNYLLPELSE--STTDDSPPLIAETYDEELSFMQNYFP------------- 366
                         P L +  S  D +  ++   YDEEL + QN F              
Sbjct: 264 -------------TPNLDQIYSDGDSASSILGGPYDEELDYFQNIFANHPISLENLGLSQ 310

Query: 367 ---------SSNF----NQPPIEQHYNDHHQHQQLTDVTNQAVQAVEPPAAATNMYSDLY 413
                    SS F      P +      HHQ   +T            PA   ++ SD+Y
Sbjct: 311 TSDEVTQSSSSGFMIKNPNPNLHDSVGIHHQEATIT-----------APANTPHLASDIY 359

Query: 414 LSCLLNGTTISSS-------------TECGHGYNINDMNMYLQQQQQHGVDHEMQEMDLM 460
           LS LLNGTT S S             T   HG +    N +L+ Q       E +EMDL+
Sbjct: 360 LSYLLNGTTSSYSDTHFPSSSSSTSSTTVEHGGH----NEFLEPQANST--SERREMDLI 413

Query: 461 EMVSSS 466
           EM+S S
Sbjct: 414 EMLSGS 419

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835570|ref|XP_002885667.1| MYB119 [Arabidopsis lyrata subsp. lyrata] gi|297331507|gb|EFH61926.1| MYB119 [Arabidopsis lyrata subsp. lyrata]

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 184/477 (38%), Positives = 246/477 (51%), Gaps = 118/477 (24%)

Query: 40  VYRPSPPLTAIDRFLWGQNN---CSQQQQQQTQNIARNNKERVISLCAFSSTSGASTAAA 96
           V+   PPLTA++RFL+GQ N   CS++++         +++R I     S          
Sbjct: 7   VHGAVPPLTAVERFLYGQKNDVLCSKKKEC--------SRDRPIVKTKMSI--------- 49

Query: 97  YGGQHEALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYKEGSKSACNNNKGM 156
                E    +   TT  PT         G   ++S I    +++ +  ++   N+ K  
Sbjct: 50  -----ETRSDNKENTTFGPTREKHLVLNGG---NRSPIG---ELVARSAARDYQNSPK-- 96

Query: 157 IGHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWH 216
              KRS K      LIKGQWT EEDRKLI+LV+Q+G RKWA ISE++ GRAGKQCRERWH
Sbjct: 97  ---KRSYKN-----LIKGQWTAEEDRKLIRLVRQHGERKWALISEKLEGRAGKQCRERWH 148

Query: 217 NHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSR 276
           NHLRP+IKKD WSEEEE++LVE+H RIGN+WAEIAK IPGRTENSIKNHWNATKRRQNS+
Sbjct: 149 NHLRPNIKKDGWSEEEEKVLVESHMRIGNKWAEIAKLIPGRTENSIKNHWNATKRRQNSK 208

Query: 277 RKNKQNEKQKGNKNKPQSS-----VLQDYIRSKNSSNNSPTCSTFSEDPSIHDHHDHDHF 331
           RK+K+      N      S     +LQDYI+S  S++             I+ ++D +  
Sbjct: 209 RKHKRESNADNNDTDVSPSAKRPCILQDYIKSIGSND-------------INKNNDENTI 255

Query: 332 NYL-LPELSE--STTDDSPPLIAETYDEELSFMQNYF---PSSNFN-------------- 371
           + L  P L +  S  D +  ++ + YDEEL ++QN F   P S  N              
Sbjct: 256 SVLSTPNLDQIYSDGDSASSMLGDPYDEELVYLQNIFANHPISLENIGLSQTSDEVTQSS 315

Query: 372 ---------QPPIEQHYNDHHQHQQLTDVTNQAVQAVEPPAAATNMYSDLYLSCLLNGTT 422
                    +P +  +   HHQ             A+  PA   ++ SD+YLS LLNGTT
Sbjct: 316 ATGFMTKNPKPNLHNNVGTHHQE-----------AAITAPANTPHLASDIYLSYLLNGTT 364

Query: 423 ISSS-------------TECGHGYNINDMNMYLQQQQQHGVDHEMQEMDLMEMVSSS 466
            S S             T   HG      N +L+ Q       E +EMDL+EM+S S
Sbjct: 365 PSYSDTHFPSSSSSTSSTTVEHG----GRNEFLEPQANS--TSERREMDLIEMLSGS 415

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
TAIR|locus:2184906	423	MYB64 "myb domain protein 64"	0.627	0.697	0.429	7.8e-56
TAIR|locus:2154543	430	MYB119 "myb domain protein 119	0.553	0.604	0.441	1.6e-55
TAIR|locus:2124162	427	MYB98 "myb domain protein 98"	0.285	0.313	0.577	3.6e-41
TAIR|locus:2829519	437	MYB118 "myb domain protein 118	0.380	0.409	0.459	5.3e-40
UNIPROTKB|F1PQL9	629	MYBL1 "Uncharacterized protein	0.210	0.157	0.666	3.3e-39
UNIPROTKB|D4AAU2	635	D4AAU2 "Uncharacterized protei	0.210	0.155	0.636	2.1e-38
UNIPROTKB|F1M9K6	737	F1M9K6 "Uncharacterized protei	0.251	0.160	0.558	3.2e-38
UNIPROTKB|F1PA25	763	MYB "Uncharacterized protein"	0.210	0.129	0.646	3.2e-38
UNIPROTKB|E1BEL3	687	MYBL1 "Uncharacterized protein	0.210	0.144	0.666	3.7e-37
RGD|1306940	691	Mybl1 "myeloblastosis oncogene	0.210	0.143	0.666	3.8e-37

TAIR|locus:2184906 MYB64 "myb domain protein 64" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 7.8e-56, Sum P(2) = 7.8e-56
 Identities = 143/333 (42%), Positives = 175/333 (52%)

Query:   160 KRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHL 219
             K   KK     +IKGQWT +EDRKLIKLV Q+G RKWA ISE++ GRAGKQCRERWHNHL
Sbjct:    92 KDITKKQPYKNIIKGQWTADEDRKLIKLVMQHGERKWAVISEKLEGRAGKQCRERWHNHL 151

Query:   220 RPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATXXXXXXXXXX 279
             RPDIKKDSWSEEEER+LVEAH RIGN+WAEIAK I GRTENSIKNHWNAT          
Sbjct:   152 RPDIKKDSWSEEEERLLVEAHTRIGNKWAEIAKLIQGRTENSIKNHWNATKRRQNSKRKH 211

Query:   280 XXXXXXXXXXXXXXSS-------VLQDYIRS--KNSSNNSPTCSTFSEDPSIXXXXXXXX 330
                            S       +L+DYI++   N  NN     T S + ++        
Sbjct:   212 KRSKNADSNSDIDDLSPSAKRPRILEDYIKNIENNDKNNGENIMTTSGN-NVLSTSNYDQ 270

Query:   331 FNYLLPELSESTTDDSPPLIAETYDEELSFMQNYFPSS-----NFNQ-PPIEQHYNDHHQ 384
             FN      SE +T     L+ + YDEEL F++N F +      N +Q   I Q  +    
Sbjct:   271 FN------SEDSTSS---LLDDPYDEELVFLKNIFENHSLENINLSQGTEITQSSSSGFM 321

Query:   385 HQQLTDVTNXXXXXXXXX--------XXXTNMYSDLYLSCLLNGTTISSSTECGHGYNIN 436
              +      N                    +++ SD+YLS LLNGT  SSS+      N N
Sbjct:   322 IENPKPKPNLYNNTFGTHLGAMVTEPANSSHLASDIYLSDLLNGTASSSSSLTFLSSNNN 381

Query:   437 DM---NMYLQQQQQHGVDHEMQEMDLMEMVSSS 466
             +    N  L  Q       E +EMDL+EM+S S
Sbjct:   382 EHAGENELLLPQANS--TSERREMDLIEMLSGS 412

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2154543 MYB119 "myb domain protein 119" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 128/290 (44%), Positives = 158/290 (54%)

Query:   159 HKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNH 218
             ++ S KK +S  LIKGQWT EEDRKLI+LV+Q+G RKWA ISE++ GRAGKQCRERWHNH
Sbjct:    91 YQNSTKKRSSKNLIKGQWTAEEDRKLIRLVRQHGERKWAMISEKLEGRAGKQCRERWHNH 150

Query:   219 LRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATXXXXXXXXX 278
             LRPDIKKD WSEEEER+LVE+H RIGN+WAEIAK IPGRTENSIKNHWNAT         
Sbjct:   151 LRPDIKKDGWSEEEERVLVESHMRIGNKWAEIAKLIPGRTENSIKNHWNATKRRQNSKRK 210

Query:   279 XXXXXXXXXXXXXXXSS-----VLQDYIRSKNSSNNSPTCSTFSEDPSIXXXXXXXXFNY 333
                             S     +LQDYI+S   +N +        + +I           
Sbjct:   211 HKRESNADNNDRDASPSAKRPCILQDYIKSIERNNINKDNDEKKNENTISVIST------ 264

Query:   334 LLPELSE--STTDDSPPLIAETYDEELSFMQNYF---PSSNFN------QPPIEQHYND- 381
               P L +  S  D +  ++   YDEEL + QN F   P S  N         + Q  +  
Sbjct:   265 --PNLDQIYSDGDSASSILGGPYDEELDYFQNIFANHPISLENLGLSQTSDEVTQSSSSG 322

Query:   382 ---HHQHQQLTDVT--NXXXXXXXXXXXXTNMYSDLYLSCLLNGTTISSS 426
                 + +  L D    +             ++ SD+YLS LLNGTT S S
Sbjct:   323 FMIKNPNPNLHDSVGIHHQEATITAPANTPHLASDIYLSYLLNGTTSSYS 372

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2124162 MYB98 "myb domain protein 98" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 82/142 (57%), Positives = 101/142 (71%)

Query:   164 KKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDI 223
             K+     L+KGQWT EEDR LI+LV++YG+RKW+ I++ + GR GKQCRERWHNHLRPDI
Sbjct:   208 KETKKSTLVKGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLPGRIGKQCRERWHNHLRPDI 267

Query:   224 KKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATXXXXXXXXXXXXXX 283
             KK++WSEEE+R+L+E H  IGN+WAEIAK +PGRTENSIKNHWNAT              
Sbjct:   268 KKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRSKY 327

Query:   284 XXXXXXXXXXSSVLQDYIRSKN 305
                        S+LQDYI+S N
Sbjct:   328 PR--------PSLLQDYIKSLN 341

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0010183 "pollen tube guidance" evidence=IMP

GO:0045697 "regulation of synergid differentiation" evidence=IMP

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2829519 MYB118 "myb domain protein 118" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 85/185 (45%), Positives = 116/185 (62%)

Query:   127 TANDQSLINWSYDIIYKEGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLIK 186
             +AN+ +++N   +      ++     NK     +R  K     ++IKGQWT EED+ L++
Sbjct:   144 SANEDTIMNRRQNNQVMIKTEQIKKKNK-RFQMRRICKPTKKASIIKGQWTPEEDKLLVQ 202

Query:   187 LVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNR 246
             LV  +G +KW+QI++ + GR GKQCRERWHNHLRPDIKKD W+EEE+ IL++AH  IGNR
Sbjct:   203 LVDLHGTKKWSQIAKMLQGRVGKQCRERWHNHLRPDIKKDGWTEEEDIILIKAHKEIGNR 262

Query:   247 WAEIAKHIPGRTENSIKNHWNATXXXXXXXXXXXXXXXXXXXXXXXXSSVLQDYIRSKNS 306
             WAEIA+ +PGRTEN+IKNHWNAT                        S+ LQ+YIRS  +
Sbjct:   263 WAEIARKLPGRTENTIKNHWNATKRRQHSRRTKGKDEISLSLG----SNTLQNYIRSV-T 317

Query:   307 SNNSP 311
              N+ P
Sbjct:   318 YNDDP 322

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

UNIPROTKB|F1PQL9 MYBL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 405 (147.6 bits), Expect = 3.3e-39, Sum P(2) = 3.3e-39
 Identities = 66/99 (66%), Positives = 87/99 (87%)

Query:   171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
             LIKG WT EED+++I+LV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct:    82 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 141

Query:   231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
             EE+RI+ EAH R+GNRWAEIAK +PGRT+NSIKNHWN+T
Sbjct:   142 EEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNST 180

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|D4AAU2 D4AAU2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 395 (144.1 bits), Expect = 2.1e-38, Sum P(2) = 2.1e-38
 Identities = 63/99 (63%), Positives = 87/99 (87%)

Query:   171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
             LIKG WT EED+++I+LV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct:    92 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 151

Query:   231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
             +E+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T
Sbjct:   152 DEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 190

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1M9K6 F1M9K6 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 399 (145.5 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
 Identities = 67/120 (55%), Positives = 94/120 (78%)

Query:   150 CNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGK 209
             CN       H+   +K  +  LIKG WT EED+++I+LV++YG ++W+ I++ + GR GK
Sbjct:    63 CNRTDVQCQHRW--QKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGK 120

Query:   210 QCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
             QCRERWHNHL P++KK SW+E+E+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T
Sbjct:   121 QCRERWHNHLNPEVKKTSWTEDEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 180

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1PA25 MYB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 398 (145.2 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
 Identities = 64/99 (64%), Positives = 87/99 (87%)

Query:   171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
             LIKG WT EED+++I+LV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct:    90 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 149

Query:   231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
             EE+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T
Sbjct:   150 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 188

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E1BEL3 MYBL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 405 (147.6 bits), Expect = 3.7e-37, P = 3.7e-37
 Identities = 66/99 (66%), Positives = 87/99 (87%)

Query:   171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
             LIKG WT EED+++I+LV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct:    20 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 79

Query:   231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
             EE+RI+ EAH R+GNRWAEIAK +PGRT+NSIKNHWN+T
Sbjct:    80 EEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNST 118

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

RGD|1306940 Mybl1 "myeloblastosis oncogene-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 405 (147.6 bits), Expect = 3.8e-37, P = 3.8e-37
 Identities = 66/99 (66%), Positives = 87/99 (87%)

Query:   171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
             LIKG WT EED+++I+LV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct:    85 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTE 144

Query:   231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
             EE+RI+ EAH R+GNRWAEIAK +PGRT+NSIKNHWN+T
Sbjct:   145 EEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNST 183

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	470
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	7e-25
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	3e-24
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	3e-21
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	5e-19
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-16
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	8e-16
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	5e-14
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	6e-13
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	2e-08
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	2e-06
pfam13837	84	pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi	3e-05
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	1e-04
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	2e-04
cd12203	66	cd12203, GT1, GT1, myb-like, SANT family	5e-04

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  106 bits (266), Expect = 7e-25
 Identities = 58/145 (40%), Positives = 90/145 (62%), Gaps = 15/145 (10%)

Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAG--RAGKQCRERWHNHLRPDIKKDSW 228
           L KG W+ EED KL++ + +YG   W+ +  + AG  R GK CR RW N+LRPD+K+ ++
Sbjct: 12  LRKGLWSPEEDEKLLRHITKYGHGCWSSVP-KQAGLQRCGKSCRLRWINYLRPDLKRGTF 70

Query: 229 SEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEKQKG- 287
           S++EE +++E HA +GNRW++IA  +PGRT+N IKN WN+           K+  +Q+G 
Sbjct: 71  SQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCL---------KKKLRQRGI 121

Query: 288 --NKNKPQSSVLQDYIRSKNSSNNS 310
             N +KP S V     ++  + + S
Sbjct: 122 DPNTHKPLSEVENGEDKNPPTDDKS 146

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  100 bits (251), Expect = 3e-24
 Identities = 54/142 (38%), Positives = 83/142 (58%), Gaps = 6/142 (4%)

Query: 160 KRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAG--RAGKQCRERWHN 217
           K++      + + +G WT EED  L+  +K+ G  +W  + +R AG  R GK CR RW N
Sbjct: 12  KKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKR-AGLLRCGKSCRLRWMN 70

Query: 218 HLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRR 277
           +LRP +K+   + +EE +++  H  +GNRW+ IA  IPGRT+N IKN+WN   R++  R+
Sbjct: 71  YLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ 130

Query: 278 K-NKQNEK--QKGNKNKPQSSV 296
             + Q  K     N +KP+  V
Sbjct: 131 GIDPQTHKPLDANNIHKPEEEV 152

Length = 249

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 96.0 bits (239), Expect = 3e-21
 Identities = 40/133 (30%), Positives = 62/133 (46%)

Query: 160 KRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHL 219
           K    K        G W   ED  L  LVK+ G   W++++  +    GKQ   RW+NHL
Sbjct: 7   KELQIKLMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHL 66

Query: 220 RPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKN 279
            P +KK +WSEEE+  L++    +G +W+ IA +   RT       +  T    +S   +
Sbjct: 67  NPQLKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDS 126

Query: 280 KQNEKQKGNKNKP 292
           K   + + +K  P
Sbjct: 127 KLQRRNEFDKIDP 139

Length = 512

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 80.1 bits (198), Expect = 5e-19
 Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 2/61 (3%)

Query: 176 WTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERI 235
           WT+EED KL+KLV++YG   W QI+E + GR    CR+RW   LRP   +  W++EE++ 
Sbjct: 1   WTEEEDEKLLKLVEKYG-NDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKEEDQR 58

Query: 236 L 236
           L
Sbjct: 59  L 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 72.6 bits (179), Expect = 2e-16
 Identities = 27/49 (55%), Positives = 37/49 (75%)

Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRP 221
           KG+WT+EED  LI+LVK+YG   W +I++ + GR  +QCRERW N L+P
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 71.0 bits (175), Expect = 8e-16
 Identities = 21/47 (44%), Positives = 33/47 (70%)

Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHL 219
           +G WT EED  LI+ VK++G   W++I++ + GR   QC+ RW+N+L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 69.9 bits (172), Expect = 2e-15
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query: 176 WTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHL 219
           WT+EED  L++ VK+YG   W +I++ + GR  KQCRERW N L
Sbjct: 2   WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 67.5 bits (166), Expect = 1e-14
 Identities = 22/44 (50%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 225 KDSWSEEEERILVEAHARIGNR-WAEIAKHIPGRTENSIKNHWN 267
           +  W+ EE+ +L+EA  + GN  W++IAKH+PGRT+N  KN WN
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWN 44

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 65.7 bits (161), Expect = 5e-14
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 225 KDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATKRR 272
           K  W+EEE+ +L+E   + G N W +IAK +PGRT    +  W    + 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 62.6 bits (153), Expect = 6e-13
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 227 SWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATK 270
            W+EEE+ +L+EA  + G N W +IAK +PGRT    +  W    
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 228 WSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEKQK 286
           W+EEE+  L++   + GN W +IA+ + GRT ++ ++ W    R + SR    + E Q+
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKEEDQR 58

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 176 WTDEEDRKLIKLVKQYGVRKWAQISER---MAGRAGKQCRERWHN 217
           WTDEED  L++ V++YGV  WA+I +    +  R     +++W N
Sbjct: 3   WTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 15/58 (25%)

Query: 175 QWTDEEDRKLIKLVKQY-----------GVRKWAQISERMAG----RAGKQCRERWHN 217
           +WTDEE R LI++  +                W +I+E+MA     R+ +QC+E+W N
Sbjct: 3   KWTDEETRALIEIWGERLDSLFQRGTKRNKHVWEEIAEKMAERGYNRSAEQCKEKWKN 60

This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins. Length = 84

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERW 215
           K +WT EED KL+ L K    + W  I+  + GR  +QC ER+
Sbjct: 5   KTEWTREEDEKLLHLAKLLPTQ-WRTIAPIV-GRTAQQCLERY 45

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 221 PDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRT 258
           P IKK  W+ EE+  L+     +  +W  IA  I GRT
Sbjct: 1   PSIKKTEWTREEDEKLLHLAKLLPTQWRTIAP-IVGRT 37

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

>gnl|CDD|213402 cd12203, GT1, GT1, myb-like, SANT family

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 175 QWTDEEDRKLIKL------VKQYGVRK---WAQISERMA----GRAGKQCRERWHNHLRP 221
           +W  EE   LI+L        Q    K   W +I+ +M      R+ KQC+E+W  +L  
Sbjct: 2   RWPREETLSLIRLRREMESRFQETKSKKALWEEIAAKMRELGYNRSAKQCKEKW-ENLNK 60

Query: 222 DIKK 225
             KK
Sbjct: 61  YYKK 64

GT-1, a myb-like protein, is one of the GT trihelix transcription factors. GT-1 binds the GT cis-element of rbcS-3A, a light-induced gene, as a dimer. Arabidopsis GT-1 is a trans-activator and acts in the stabilization of components of the transcrtiption pre-initiation complex comprised of TFIIA-TBP-TATA. The isolated GT-1 DNA-binding domain is sufficient to bind DNA. This region closely resemble the myb domain, but with longer helices. It has been proposed that GT-1 may respond to light signals via calcium-dependent phosphorylation to create a light-modulated molecular switch. These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	470
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.97
PLN03212	249	Transcription repressor MYB5; Provisional	99.97
PLN03091	459	hypothetical protein; Provisional	99.96
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.92
PLN03212	249	Transcription repressor MYB5; Provisional	99.89
PLN03091	459	hypothetical protein; Provisional	99.87
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.87
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.76
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.62
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.57
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.54
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.48
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.48
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.39
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.38
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.22
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.22
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.19
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.08
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.04
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.94
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.9
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.65
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.52
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.41
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.37
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.19
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.13
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.86
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.77
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.74
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.44
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.38
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.32
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.27
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.04
PRK13923	170	putative spore coat protein regulator protein YlbO	95.8
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.79
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.45
PRK13923	170	putative spore coat protein regulator protein YlbO	95.36
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.28
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.99
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.79
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.76
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.89
KOG4282	345	consensus Transcription factor GT-2 and related pr	91.27
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	90.55
KOG2656	445	consensus DNA methyltransferase 1-associated prote	90.26
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	89.93
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	88.55
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	86.1
KOG1194	534	consensus Predicted DNA-binding protein, contains	85.71
KOG4282	345	consensus Transcription factor GT-2 and related pr	83.87
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	83.72
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	82.77
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	81.6
PLN03138	796	Protein TOC75; Provisional	80.6

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.97  E-value=5.8e-31  Score=257.32  Aligned_cols=110  Identities=42%  Similarity=0.834  Sum_probs=104.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhc-CCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChH
Q 046581          169 VALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMA-GRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRW  247 (470)
Q Consensus       169 p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp-gRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kW  247 (470)
                      +.+.||+||+|||.+|+++|++||.++|..||+.++ +|++++||.||.+||+|+++++.||+|||.+|+++|..+|++|
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            335689999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCCCHHHHHHHHHHhHHhhhhccc
Q 046581          248 AEIAKHIPGRTENSIKNHWNATKRRQNSRRK  278 (470)
Q Consensus       248 s~IAk~LpgRT~~q~KnRw~~llrr~~~k~k  278 (470)
                      ++||++|||||+++|||+|+..+||+..+..
T Consensus        85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999888766543

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.97  E-value=2e-30  Score=251.91  Aligned_cols=110  Identities=41%  Similarity=0.818  Sum_probs=104.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHh-cCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCCh
Q 046581          168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERM-AGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNR  246 (470)
Q Consensus       168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~l-pgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~k  246 (470)
                      .+.+++++||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||.|||++|++++.+||++
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK   99 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR   99 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence            578899999999999999999999988999999998 5999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCCCHHHHHHHHHHhHHhhhhcc
Q 046581          247 WAEIAKHIPGRTENSIKNHWNATKRRQNSRR  277 (470)
Q Consensus       247 Ws~IAk~LpgRT~~q~KnRw~~llrr~~~k~  277 (470)
                      |+.||++|||||+++|||||+.++|++..+.
T Consensus       100 Ws~IAk~LpGRTDnqIKNRWns~LrK~l~r~  130 (249)
T PLN03212        100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ  130 (249)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhHHHHhc
Confidence            9999999999999999999999998775543

>PLN03091 hypothetical protein; Provisional

Probab=99.96  E-value=7.4e-29  Score=256.45  Aligned_cols=107  Identities=44%  Similarity=0.917  Sum_probs=102.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhc-CCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChH
Q 046581          169 VALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMA-GRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRW  247 (470)
Q Consensus       169 p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp-gRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kW  247 (470)
                      ..++|++||+|||++|+++|.+||..+|..||+.++ +|+++|||+||.++|+|.+++++||+|||++|++++.++|++|
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKW   89 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRW   89 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcch
Confidence            568899999999999999999999989999999985 9999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCCCHHHHHHHHHHhHHhhhh
Q 046581          248 AEIAKHIPGRTENSIKNHWNATKRRQNS  275 (470)
Q Consensus       248 s~IAk~LpgRT~~q~KnRw~~llrr~~~  275 (470)
                      ++||++|||||+++|||||+.++||+.+
T Consensus        90 skIAk~LPGRTDnqIKNRWnslLKKklr  117 (459)
T PLN03091         90 SQIAAQLPGRTDNEIKNLWNSCLKKKLR  117 (459)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988765

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.92  E-value=2e-25  Score=237.14  Aligned_cols=185  Identities=23%  Similarity=0.362  Sum_probs=159.5

Q ss_pred             eeeeeeccCCCCCccccccCCCc-cCCCCCCCCCchHHHHHHHHHHHcCCCCcccccChhhcccccCC--Cccccc----
Q 046581           79 VISLCAFSSTSGASTAAAYGGQH-EALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYKEG--SKSACN----  151 (470)
Q Consensus        79 ~~S~~~~s~~s~~~~~~~~g~~~-~~~~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~gr--s~~~cR----  151 (470)
                      .||..+|++..++-...++|++. .+...+-.|++|||++|+.+..++|      ..+|..||.-+|+  +.-||.    
T Consensus       224 ~ISn~dfEgsrS~~~~~~~W~n~l~P~~nk~~WS~EE~E~L~AiA~A~~------~~~W~~IA~~Lgt~RS~yQC~~kF~  297 (939)
T KOG0049|consen  224 AISNFDFEGSRSEWAVKSKWYNELNPKWNKEHWSNEEVEKLKALAEAPK------FVSWPMIALNLGTNRSSYQCMEKFK  297 (939)
T ss_pred             HhccccccccCCHHHHHHHHhhhcCCccchhccChHHHHHHHHHHhccc------cccHHHHHHHhCCCcchHHHHHHHH
Confidence            36788999999999888888885 4555668999999999999988887      3569999987765  446665    


Q ss_pred             --------------------------------------------CccccccccccccccCCCCCCCCCCCHHHHHHHHHH
Q 046581          152 --------------------------------------------NNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLIKL  187 (470)
Q Consensus       152 --------------------------------------------~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~~Ll~l  187 (470)
                                                                  +..|+.   .||.+.|.|.+++|+||++||.+|+.+
T Consensus       298 t~~~~L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI---~R~~~~LdPsikhg~wt~~ED~~L~~A  374 (939)
T KOG0049|consen  298 TEVSQLSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLI---TRFSHTLDPSVKHGRWTDQEDVLLVCA  374 (939)
T ss_pred             HHHHHHHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhh---hhheeccCccccCCCCCCHHHHHHHHH
Confidence                                                        333333   399999999999999999999999999


Q ss_pred             HHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCCCCCH---HHHH
Q 046581          188 VKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTE---NSIK  263 (470)
Q Consensus       188 V~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~---~q~K  263 (470)
                      |.+||...|.+|-+.+|||+..|||+||.+.|....+++.||..||+.|+.+|.+|| ++|.+||.+||.||.   ..||
T Consensus       375 V~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR  454 (939)
T KOG0049|consen  375 VSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRR  454 (939)
T ss_pred             HHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999 689999999999999   4555


Q ss_pred             HHHHHhHHh
Q 046581          264 NHWNATKRR  272 (470)
Q Consensus       264 nRw~~llrr  272 (470)
                      .|+-.++++
T Consensus       455 ~R~~~~k~r  463 (939)
T KOG0049|consen  455 LRLIAAKLR  463 (939)
T ss_pred             HHHHHHHHH
Confidence            555554443

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.89  E-value=8.1e-24  Score=205.99  Aligned_cols=102  Identities=20%  Similarity=0.351  Sum_probs=93.3

Q ss_pred             CCCCCCCchHHHHHHHHHHHcCCCCcccccChhhccccc--CCCcccccCccccccccccccccCCCCCCCCCCCHHHHH
Q 046581          105 RTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK--EGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDR  182 (470)
Q Consensus       105 ~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~--grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~  182 (470)
                      .++++||+|||++|+++|.+||..      +|..||..+  +|+..+||         .||.++|+|.+++++||+|||+
T Consensus        23 lKRg~WT~EEDe~L~~lV~kyG~~------nW~~IAk~~g~gRT~KQCR---------eRW~N~L~P~I~kgpWT~EED~   87 (249)
T PLN03212         23 MKRGPWTVEEDEILVSFIKKEGEG------RWRSLPKRAGLLRCGKSCR---------LRWMNYLRPSVKRGGITSDEED   87 (249)
T ss_pred             CcCCCCCHHHHHHHHHHHHHhCcc------cHHHHHHhhhcCCCcchHH---------HHHHHhhchhcccCCCChHHHH
Confidence            567899999999999999999965      499999854  67888887         6999999999999999999999


Q ss_pred             HHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccc
Q 046581          183 KLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD  222 (470)
Q Consensus       183 ~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~  222 (470)
                      +|++++..|| ++|+.||+.|||||+.+|++||+.+|++.
T Consensus        88 lLlel~~~~G-nKWs~IAk~LpGRTDnqIKNRWns~LrK~  126 (249)
T PLN03212         88 LILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLRKK  126 (249)
T ss_pred             HHHHHHHhcc-ccHHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence            9999999999 69999999999999999999999987744

>PLN03091 hypothetical protein; Provisional

Probab=99.87  E-value=7e-23  Score=212.30  Aligned_cols=105  Identities=17%  Similarity=0.334  Sum_probs=94.6

Q ss_pred             CCCCCCCCCchHHHHHHHHHHHcCCCCcccccChhhccccc--CCCcccccCccccccccccccccCCCCCCCCCCCHHH
Q 046581          103 ALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK--EGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEE  180 (470)
Q Consensus       103 ~~~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~--grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EE  180 (470)
                      ...++++||+|||++|+++|.+||..      +|..||..+  +|+.++||         .||.++|+|.++|++||+||
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~------nWs~IAk~~g~gRT~KQCR---------ERW~NyLdP~IkKgpWT~EE   74 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHG------CWSSVPKQAGLQRCGKSCR---------LRWINYLRPDLKRGTFSQQE   74 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcC------CHHHHhhhhccCcCcchHh---------HHHHhccCCcccCCCCCHHH
Confidence            34567899999999999999999965      499999854  57778887         69999999999999999999


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcccccc
Q 046581          181 DRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDI  223 (470)
Q Consensus       181 D~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~i  223 (470)
                      |++|++++.+|| .+|.+||+.|||||+.+||+||+.+|++.+
T Consensus        75 D~lLLeL~k~~G-nKWskIAk~LPGRTDnqIKNRWnslLKKkl  116 (459)
T PLN03091         75 ENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKKKL  116 (459)
T ss_pred             HHHHHHHHHHhC-cchHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999 699999999999999999999998887644

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.87  E-value=1.1e-22  Score=199.18  Aligned_cols=101  Identities=22%  Similarity=0.355  Sum_probs=92.5

Q ss_pred             CCCCCCCchHHHHHHHHHHHcCCCCcccccChhhccccc--CCCcccccCccccccccccccccCCCCCCCCCCCHHHHH
Q 046581          105 RTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK--EGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDR  182 (470)
Q Consensus       105 ~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~--grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~  182 (470)
                      +.+|+||+|||++|+++|.+||..+      |..|+...  +|..++||         .||.+||+|.++||.||+|||+
T Consensus         7 ~~kGpWt~EED~~L~~~V~~~G~~~------W~~i~k~~gl~R~GKSCR---------lRW~NyLrP~ikrg~fT~eEe~   71 (238)
T KOG0048|consen    7 LVKGPWTQEEDLTQIRSIKSFGKHN------GTALPKLAGLRRCGKSCR---------LRWTNYLRPDLKRGNFSDEEED   71 (238)
T ss_pred             ccCCCCChHHHHHHHHHHHHhCCCC------cchhhhhcCCCccchHHH---------HHhhcccCCCccCCCCCHHHHH
Confidence            3469999999999999999999764      99999843  67888888         7999999999999999999999


Q ss_pred             HHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcccc
Q 046581          183 KLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRP  221 (470)
Q Consensus       183 ~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p  221 (470)
                      +|++++..+| ++|+.||++|||||++.++++|+.+|+.
T Consensus        72 ~Ii~lH~~~G-NrWs~IA~~LPGRTDNeIKN~Wnt~lkk  109 (238)
T KOG0048|consen   72 LIIKLHALLG-NRWSLIAGRLPGRTDNEVKNHWNTHLKK  109 (238)
T ss_pred             HHHHHHHHHC-cHHHHHHhhCCCcCHHHHHHHHHHHHHH
Confidence            9999999999 7999999999999999999999887753

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.76  E-value=1.2e-18  Score=185.93  Aligned_cols=144  Identities=22%  Similarity=0.456  Sum_probs=120.1

Q ss_pred             ccChhhccc--ccCC-CcccccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCch--------------
Q 046581          133 LINWSYDII--YKEG-SKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRK--------------  195 (470)
Q Consensus       133 ~~nW~~IA~--~~gr-s~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~--------------  195 (470)
                      ..+|..|..  |-|+ +.-.|+         ..|.+++.|.++|..|++|||++|+.+...++.-+              
T Consensus       219 ~~DW~~ISn~dfEgsrS~~~~~---------~~W~n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~  289 (939)
T KOG0049|consen  219 YVDWTAISNFDFEGSRSEWAVK---------SKWYNELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSS  289 (939)
T ss_pred             ccCHHHhccccccccCCHHHHH---------HHHhhhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcch
Confidence            378999987  4453 445565         59999999999999999999999988876553333              


Q ss_pred             -----------------------------------------HHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHH
Q 046581          196 -----------------------------------------WAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEER  234 (470)
Q Consensus       196 -----------------------------------------Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~  234 (470)
                                                               |.+|-.+||||+..|..-||...|+|.+++++||.+||.
T Consensus       290 yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~  369 (939)
T KOG0049|consen  290 YQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDV  369 (939)
T ss_pred             HHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHH
Confidence                                                     666666666666666677778889999999999999999


Q ss_pred             HHHHHHHHhCCh-HHHHhhhCCCCCHHHHHHHHHHhHHhhhhccccchhhhh
Q 046581          235 ILVEAHARIGNR-WAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEKQ  285 (470)
Q Consensus       235 ~Ll~lv~~~G~k-Ws~IAk~LpgRT~~q~KnRw~~llrr~~~k~k~~~~e~~  285 (470)
                      +|+.+|.+||.+ |.+|-..+|||++.|||.||...+.+.+++..|.-.+++
T Consensus       370 ~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~ede  421 (939)
T KOG0049|consen  370 LLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDE  421 (939)
T ss_pred             HHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchH
Confidence            999999999965 999999999999999999999999988888888776654

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.62  E-value=9.5e-16  Score=119.02  Aligned_cols=60  Identities=52%  Similarity=1.116  Sum_probs=54.9

Q ss_pred             CCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHH
Q 046581          176 WTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERIL  236 (470)
Q Consensus       176 WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~L  236 (470)
                      ||+|||++|+++|..|| .+|..||+.|+.||+.+|+.||.++|.+.+++++||.+||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 6999999999669999999999999999999999999999987

...

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.57  E-value=5.9e-15  Score=159.03  Aligned_cols=158  Identities=20%  Similarity=0.340  Sum_probs=131.7

Q ss_pred             CCccCCC-CCCCCCchHHHHHHHHHHHcCCCCcccccChhhcccccCCCcccccCccccccccccccccCCCC--CCCCC
Q 046581           99 GQHEALR-TSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYKEGSKSACNNNKGMIGHKRSNKKGASVA--LIKGQ  175 (470)
Q Consensus        99 ~~~~~~~-k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~grs~~~cR~~~q~~~~~rRw~~~l~p~--lkKG~  175 (470)
                      +...+.. ++|.||++|++.|..+++.+|++       |.+|+..+||++++||+         +|..+....  .++|+
T Consensus       375 R~y~~FE~~rg~wt~ee~eeL~~l~~~~g~~-------W~~Ig~~lgr~P~~crd---------~wr~~~~~g~~~~r~~  438 (607)
T KOG0051|consen  375 RAYTPFENKRGKWTPEEEEELKKLVVEHGND-------WKEIGKALGRMPMDCRD---------RWRQYVKCGSKRNRGA  438 (607)
T ss_pred             hcCCccccccCCCCcchHHHHHHHHHHhccc-------HHHHHHHHccCcHHHHH---------HHHHhhccccccccCc
Confidence            5666777 88999999999999999999987       99999999999999995         666655555  69999


Q ss_pred             CCHHHHHHHHHHHH-------Hh------------------CCchHHHHHHHhcCCChhhhhhhhhhcc-ccccccCCCC
Q 046581          176 WTDEEDRKLIKLVK-------QY------------------GVRKWAQISERMAGRAGKQCRERWHNHL-RPDIKKDSWS  229 (470)
Q Consensus       176 WT~EED~~Ll~lV~-------~y------------------G~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L-~p~ikk~~WT  229 (470)
                      ||.||.++|+++|+       ++                  ...+|..|++.++.|+..|||.+|..++ .|..+...|.
T Consensus       439 Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~  518 (607)
T KOG0051|consen  439 WSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQES  518 (607)
T ss_pred             chHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhccccc
Confidence            99999999999996       33                  2247999999999999999999999987 4455666777


Q ss_pred             H-HHHHHHHHHHHHhC------ChHHHHhhhCCCCC-HHHHHHHHHHhHHh
Q 046581          230 E-EEERILVEAHARIG------NRWAEIAKHIPGRT-ENSIKNHWNATKRR  272 (470)
Q Consensus       230 ~-EED~~Ll~lv~~~G------~kWs~IAk~LpgRT-~~q~KnRw~~llrr  272 (470)
                      . .+...|++-+..++      -.|..|+...||.. +.+|+.+|..+++.
T Consensus       519 ~~~~~v~l~ErL~dl~~~e~~~IDW~~l~~~~~g~~~~~e~r~q~~~lk~~  569 (607)
T KOG0051|consen  519 KGSDMVWLLERLSDLDLTEESPIDWKSLAEYAPGESTGEELRLQFERLKKK  569 (607)
T ss_pred             ccchhHHHHHHHHhcccccCCccCHHHHHHhCCCCCcHHHHHHHHHhHhhc
Confidence            5 34455666655554      26999999999998 99999999998765

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.54  E-value=1.3e-14  Score=156.47  Aligned_cols=167  Identities=20%  Similarity=0.366  Sum_probs=126.5

Q ss_pred             CccCCCCCCCCCchHHHHHHHHHHHcCCCCcccccChhhccc---------------ccCC--CcccccCcccccccccc
Q 046581          100 QHEALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDII---------------YKEG--SKSACNNNKGMIGHKRS  162 (470)
Q Consensus       100 ~~~~~~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~---------------~~gr--s~~~cR~~~q~~~~~rR  162 (470)
                      +.+.....+.|+++||..|-..|..|-..     ..|.....               +...  ....-|+...++.+-+|
T Consensus       301 ~~~~e~~~~~F~~eed~ale~~V~~y~~~-----eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR  375 (607)
T KOG0051|consen  301 TKEDEINLKKFSKEEDAALENFVNEYLAN-----EGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRR  375 (607)
T ss_pred             chhhhhhhhhccHHHHHHHHHHHHHHHHh-----hCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHh
Confidence            33455666899999999998888766211     11332211               1110  01112555555554445


Q ss_pred             ccccCCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcccccc--ccCCCCHHHHHHHHHHH
Q 046581          163 NKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDI--KKDSWSEEEERILVEAH  240 (470)
Q Consensus       163 w~~~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~i--kk~~WT~EED~~Ll~lv  240 (470)
                      -++.+.+  .+|.||+||++.|..+|.++| +.|..|++.| ||.+..|++||+++....-  +++.||.||++.|+.+|
T Consensus       376 ~y~~FE~--~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V  451 (607)
T KOG0051|consen  376 AYTPFEN--KRGKWTPEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTV  451 (607)
T ss_pred             cCCcccc--ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHH
Confidence            5555554  999999999999999999999 7999999999 9999999999999998874  88999999999999999


Q ss_pred             H-------Hh-------------------CChHHHHhhhCCCCCHHHHHHHHHHhHHhhhh
Q 046581          241 A-------RI-------------------GNRWAEIAKHIPGRTENSIKNHWNATKRRQNS  275 (470)
Q Consensus       241 ~-------~~-------------------G~kWs~IAk~LpgRT~~q~KnRw~~llrr~~~  275 (470)
                      .       ++                   +-.|+.|+..+..|+..+|+.+|..++.+...
T Consensus       452 ~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~  512 (607)
T KOG0051|consen  452 NEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSF  512 (607)
T ss_pred             HHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHh
Confidence            5       23                   11599999999999999999999999876543

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=3.5e-14  Score=149.32  Aligned_cols=105  Identities=30%  Similarity=0.598  Sum_probs=99.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHH
Q 046581          171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEI  250 (470)
Q Consensus       171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~I  250 (470)
                      ++.|-|+..||+.|..+|.+||.+.|++|++.++-.+++||+.||..+|+|.|++..|+.|||+.||.+...+...|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCHHHHHHHHHHhHHhhhhc
Q 046581          251 AKHIPGRTENSIKNHWNATKRRQNSR  276 (470)
Q Consensus       251 Ak~LpgRT~~q~KnRw~~llrr~~~k  276 (470)
                      |..+ ||+.+||-.||+.++--...+
T Consensus        85 a~i~-gr~~~qc~eRy~~ll~~~~s~  109 (617)
T KOG0050|consen   85 ADIM-GRTSQQCLERYNNLLDVYVSY  109 (617)
T ss_pred             HHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            9999 999999999999887654443

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.48  E-value=4.7e-14  Score=150.69  Aligned_cols=108  Identities=32%  Similarity=0.641  Sum_probs=101.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChH
Q 046581          168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRW  247 (470)
Q Consensus       168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kW  247 (470)
                      ...++.|.|+..||+.|..+|+.||.++|++||..+.-|+++||+.||+++++|.+++..|+.+||..|+.+..++|..|
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w   94 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW   94 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence            44567899999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCCCHHHHHHHHHHhHHhhhh
Q 046581          248 AEIAKHIPGRTENSIKNHWNATKRRQNS  275 (470)
Q Consensus       248 s~IAk~LpgRT~~q~KnRw~~llrr~~~  275 (470)
                      +.||..+++|+..+|.+||..++....+
T Consensus        95 stia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          95 STIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhccccCccchHHHHHHHHHHhhhhhc
Confidence            9999999999999999999987765444

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.39  E-value=4.4e-13  Score=100.21  Aligned_cols=47  Identities=53%  Similarity=1.088  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhc-CCChhhhhhhhhhcc
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMA-GRAGKQCRERWHNHL  219 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp-gRT~~Qcr~Rw~~~L  219 (470)
                      |++||+|||++|+++|.+||..+|..||..|| +||..||+.||+++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999767999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.38  E-value=4.6e-13  Score=143.17  Aligned_cols=152  Identities=20%  Similarity=0.219  Sum_probs=132.1

Q ss_pred             CCCCCCCCchHHHHHHHHHHHcCCCCcccccChhhcccccCC-CcccccCccccccccccccccCCCCCCCCCCCHHHHH
Q 046581          104 LRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYKEG-SKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDR  182 (470)
Q Consensus       104 ~~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~gr-s~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~  182 (470)
                      .++.|.|+..||+.|+.+|..+|..+      |..||..+.. ...+|+         .||..+++|.++++.|+.|||.
T Consensus        17 ~~k~gsw~~~EDe~l~~~vk~l~~nn------ws~vas~~~~~~~kq~~---------~rw~~~lnp~lk~~~~~~eed~   81 (512)
T COG5147          17 KRKGGSWKRTEDEDLKALVKKLGPNN------WSKVASLLISSTGKQSS---------NRWNNHLNPQLKKKNWSEEEDE   81 (512)
T ss_pred             eecCCCCCCcchhHHHHHHhhccccc------HHHHHHHhccccccccc---------chhhhhhchhcccccccHHHHH
Confidence            35668999999999999999998764      9999986654 556666         5999999999999999999999


Q ss_pred             HHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHH
Q 046581          183 KLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSI  262 (470)
Q Consensus       183 ~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~  262 (470)
                      .|+.+..++|. .|+.||..+++|+..+|.+||.+.|.+... ..|+..++...+..+..|...|..+....-.+-...|
T Consensus        82 ~li~l~~~~~~-~wstia~~~d~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~  159 (512)
T COG5147          82 QLIDLDKELGT-QWSTIADYKDRRTAQQCVERYVNTLEDLSS-THDSKLQRRNEFDKIDPFNENSARRPDIYEDELLERE  159 (512)
T ss_pred             HHHHHHHhcCc-hhhhhccccCccchHHHHHHHHHHhhhhhc-cccccccchhhccccCchhhhhhhhhhhhhcccchhh
Confidence            99999999995 899999999999999999999999987666 8899999988888888899999888877667778888


Q ss_pred             HHHHHHhHHh
Q 046581          263 KNHWNATKRR  272 (470)
Q Consensus       263 KnRw~~llrr  272 (470)
                      .|++..+..+
T Consensus       160 ~N~~~~~~~~  169 (512)
T COG5147         160 VNREASYRLR  169 (512)
T ss_pred             hhHHHHHHHH
Confidence            8888665544

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.22  E-value=1.6e-11  Score=95.31  Aligned_cols=58  Identities=34%  Similarity=0.673  Sum_probs=48.3

Q ss_pred             CCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhhhhccccchhhhh
Q 046581          228 WSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEKQ  285 (470)
Q Consensus       228 WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~~~k~k~~~~e~~  285 (470)
                      ||+|||++|+++|.+||++|.+||+.|+.||+.+|++||...++...++.++..+++.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~   58 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQ   58 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHh
Confidence            9999999999999999999999999996699999999999977776677777666543

...

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.22  E-value=1.5e-11  Score=91.85  Aligned_cols=46  Identities=35%  Similarity=0.750  Sum_probs=41.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCh-HHHHhhhCC-CCCHHHHHHHHHHhH
Q 046581          225 KDSWSEEEERILVEAHARIGNR-WAEIAKHIP-GRTENSIKNHWNATK  270 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G~k-Ws~IAk~Lp-gRT~~q~KnRw~~ll  270 (470)
                      +++||+|||++|+++|.+||.+ |..||..|| +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5789999999999999999988 999999999 999999999999764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.19  E-value=1.5e-12  Score=137.30  Aligned_cols=98  Identities=26%  Similarity=0.433  Sum_probs=89.3

Q ss_pred             CCCCCCCchHHHHHHHHHHHcCCCCcccccChhhcccccCC-CcccccCccccccccccccccCCCCCCCCCCCHHHHHH
Q 046581          105 RTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYKEG-SKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRK  183 (470)
Q Consensus       105 ~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~gr-s~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~~  183 (470)
                      ++.|.|+..||++|...|.+||...      |.+|+.++.+ +..+|+         .||..+++|.+++--|+.|||.+
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nq------ws~i~sll~~kt~rqC~---------~rw~e~ldp~i~~tews~eeder   69 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQ------WSRIASLLNRKTARQCK---------ARWEEWLDPAIKKTEWSREEDER   69 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHH------HHHHHHHHhhcchhHHH---------HHHHHHhCHHHhhhhhhhhHHHH
Confidence            5678999999999999999999776      9999997765 567776         59999999999999999999999


Q ss_pred             HHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcc
Q 046581          184 LIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHL  219 (470)
Q Consensus       184 Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L  219 (470)
                      |+-+..... ..|..|+..| ||++.||-+||.++|
T Consensus        70 lLhlakl~p-~qwrtIa~i~-gr~~~qc~eRy~~ll  103 (617)
T KOG0050|consen   70 LLHLAKLEP-TQWRTIADIM-GRTSQQCLERYNNLL  103 (617)
T ss_pred             HHHHHHhcC-CccchHHHHh-hhhHHHHHHHHHHHH
Confidence            999999998 5999999999 999999999998766

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.08  E-value=1.8e-10  Score=83.41  Aligned_cols=48  Identities=54%  Similarity=1.155  Sum_probs=44.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccc
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~  220 (470)
                      +++||++||.+|+.++..||..+|..||..|++||+.+|+.||..++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            468999999999999999997799999999999999999999998764

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.04  E-value=3.6e-10  Score=81.86  Aligned_cols=47  Identities=40%  Similarity=0.897  Sum_probs=44.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581          225 KDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~llr  271 (470)
                      +.+||++||.+|+.++..+| .+|..||..|++||+.+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            36899999999999999999 999999999999999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.94  E-value=1.2e-09  Score=78.06  Aligned_cols=45  Identities=51%  Similarity=1.073  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcc
Q 046581          175 QWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHL  219 (470)
Q Consensus       175 ~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L  219 (470)
                      +||+|||.+|+.++..||..+|..||..|++|+..+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999779999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.90  E-value=3e-09  Score=75.97  Aligned_cols=43  Identities=42%  Similarity=0.937  Sum_probs=41.3

Q ss_pred             CCCHHHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHh
Q 046581          227 SWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNAT  269 (470)
Q Consensus       227 ~WT~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~l  269 (470)
                      +||++||.+|+.++.++| .+|..||+.+++||..+|++||+.+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 8999999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.65  E-value=0.00021  Score=68.98  Aligned_cols=98  Identities=28%  Similarity=0.453  Sum_probs=75.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCchHHHHHHHhc---CCChhhhhhhhhhcc-cccc--------------------ccCCCCH
Q 046581          175 QWTDEEDRKLIKLVKQYGVRKWAQISERMA---GRAGKQCRERWHNHL-RPDI--------------------KKDSWSE  230 (470)
Q Consensus       175 ~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp---gRT~~Qcr~Rw~~~L-~p~i--------------------kk~~WT~  230 (470)
                      +|++++|-+|+.+|..-.  +-..|+.-++   ..|-..+.+||+.+| +|.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999997544  7888877665   678899999998876 3322                    4578999


Q ss_pred             HHHHHHHHHHHHhCC---hHHHHhh----hC-CCCCHHHHHHHHHHhHHhhh
Q 046581          231 EEERILVEAHARIGN---RWAEIAK----HI-PGRTENSIKNHWNATKRRQN  274 (470)
Q Consensus       231 EED~~Ll~lv~~~G~---kWs~IAk----~L-pgRT~~q~KnRw~~llrr~~  274 (470)
                      +||++|.........   .+.+|-.    .| ++||+.++.++|..|++...
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~L  130 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHL  130 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhch
Confidence            999999987655443   5777732    23 78999999999998876543

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.52  E-value=0.00012  Score=77.18  Aligned_cols=59  Identities=20%  Similarity=0.583  Sum_probs=51.7

Q ss_pred             cccccCCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccc
Q 046581          162 SNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       162 Rw~~~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~  220 (470)
                      |....+.-.+-...||.+|+-+|++++..||.+||..||.+++.|+...|+++|.+++-
T Consensus        61 rim~~~s~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   61 RIMDTNSFPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             eeecCCCCCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            33344456677889999999999999999999999999999999999999999988763

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.41  E-value=0.00026  Score=55.47  Aligned_cols=47  Identities=19%  Similarity=0.401  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchH---HHHHHHhc-CC-Chhhhhhhhhhcc
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVRKW---AQISERMA-GR-AGKQCRERWHNHL  219 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~~W---s~IA~~lp-gR-T~~Qcr~Rw~~~L  219 (470)
                      +-.||+||..+++++++.+|.++|   +.|++.|. .| |..||+.+++.+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            456999999999999999997799   99999985 45 9999999998764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.37  E-value=0.00031  Score=65.63  Aligned_cols=52  Identities=31%  Similarity=0.619  Sum_probs=45.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHh---CC----hHHHHhhhCCCCCHHHHHHHHHHhHHhhhhc
Q 046581          224 KKDSWSEEEERILVEAHARI---GN----RWAEIAKHIPGRTENSIKNHWNATKRRQNSR  276 (470)
Q Consensus       224 kk~~WT~EED~~Ll~lv~~~---G~----kWs~IAk~LpgRT~~q~KnRw~~llrr~~~k  276 (470)
                      +...||.|||.+|-+.|..|   |+    -..++++.| +||..+|.-|||+.+|++...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            55789999999999998876   32    389999999 999999999999999987754

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.19  E-value=0.00093  Score=52.40  Aligned_cols=46  Identities=17%  Similarity=0.472  Sum_probs=40.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC-hH---HHHhhhCC-CC-CHHHHHHHHHHhH
Q 046581          225 KDSWSEEEERILVEAHARIGN-RW---AEIAKHIP-GR-TENSIKNHWNATK  270 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G~-kW---s~IAk~Lp-gR-T~~q~KnRw~~ll  270 (470)
                      +-.||+||...+++++..+|. +|   ..|+..+. .| |..||+.|+....
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999996 99   99999874 45 9999999998754

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.13  E-value=0.00063  Score=71.91  Aligned_cols=49  Identities=35%  Similarity=0.611  Sum_probs=44.6

Q ss_pred             cccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581          223 IKKDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       223 ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~llr  271 (470)
                      +-...||.+||.+||+++..|| ++|..||.++..|+..+||.+|..+.-
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            4457899999999999999999 899999999999999999999987643

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.86  E-value=0.0015  Score=54.00  Aligned_cols=53  Identities=26%  Similarity=0.671  Sum_probs=38.2

Q ss_pred             cCCCCHHHHHHHHHHHHH------hC--C------hHHHHhhhCC----CCCHHHHHHHHHHhHHhhhhcc
Q 046581          225 KDSWSEEEERILVEAHAR------IG--N------RWAEIAKHIP----GRTENSIKNHWNATKRRQNSRR  277 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~------~G--~------kWs~IAk~Lp----gRT~~q~KnRw~~llrr~~~k~  277 (470)
                      +..||.+|...||+++..      ++  +      -|..||..|.    .||+.||++||+.|.++.+..+
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k   71 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIK   71 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            357999999999999877      21  1      3999999873    6999999999999988765443

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.77  E-value=0.00097  Score=62.35  Aligned_cols=50  Identities=26%  Similarity=0.522  Sum_probs=42.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHh---CC---chHHHHHHHhcCCChhhhhhhhhhcccc
Q 046581          171 LIKGQWTDEEDRKLIKLVKQY---GV---RKWAQISERMAGRAGKQCRERWHNHLRP  221 (470)
Q Consensus       171 lkKG~WT~EED~~Ll~lV~~y---G~---~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p  221 (470)
                      .+...||.|||.+|.+.|-+|   |.   .-...|++.| +||+..|.-||+.+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHH
Confidence            356789999999999999998   31   1478889998 99999999999998874

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.74  E-value=0.0016  Score=69.38  Aligned_cols=46  Identities=17%  Similarity=0.484  Sum_probs=42.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhc
Q 046581          172 IKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNH  218 (470)
Q Consensus       172 kKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~  218 (470)
                      ....||.+|..+|++.|+.|| ..|.+||.+++.||..||..||.++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            566999999999999999999 5999999999999999999999763

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.44  E-value=0.0034  Score=50.54  Aligned_cols=51  Identities=27%  Similarity=0.559  Sum_probs=34.2

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCchHHHHHHHhc-CCChhhhhhhhhhcccccc
Q 046581          173 KGQWTDEEDRKLIKLVKQY--------GVRKWAQISERMA-GRAGKQCRERWHNHLRPDI  223 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~y--------G~~~Ws~IA~~lp-gRT~~Qcr~Rw~~~L~p~i  223 (470)
                      +-+||+|||+.|++.|..+        |..-|..+++.-+ .+|-.+-|+||.+.|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            3479999999999999766        3224999999988 9999999999999887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.38  E-value=0.0034  Score=68.34  Aligned_cols=49  Identities=18%  Similarity=0.548  Sum_probs=44.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhc
Q 046581          169 VALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNH  218 (470)
Q Consensus       169 p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~  218 (470)
                      ..-.++.||.+|..+|++.|..|| .+|.+||.+++.||..||..++.++
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHhc
Confidence            445678899999999999999999 5999999999999999999999763

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.32  E-value=0.0049  Score=50.85  Aligned_cols=46  Identities=41%  Similarity=0.827  Sum_probs=33.8

Q ss_pred             CCCCHHHHHHHHHHHHH--h----C--C-----chHHHHHHHhc----CCChhhhhhhhhhcc
Q 046581          174 GQWTDEEDRKLIKLVKQ--Y----G--V-----RKWAQISERMA----GRAGKQCRERWHNHL  219 (470)
Q Consensus       174 G~WT~EED~~Ll~lV~~--y----G--~-----~~Ws~IA~~lp----gRT~~Qcr~Rw~~~L  219 (470)
                      -.||.+|...|++++..  +    +  .     .-|..||..|.    .||+.||+.+|.++.
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            46999999999999987  2    1  0     14999999985    699999999998754

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.27  E-value=0.0051  Score=65.76  Aligned_cols=46  Identities=24%  Similarity=0.540  Sum_probs=43.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHh
Q 046581          224 KKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT  269 (470)
Q Consensus       224 kk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~l  269 (470)
                      ....||.+|..+|++.+..||-.|.+||+++..||..||--||..+
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            3458999999999999999999999999999999999999999765

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.04  E-value=0.0083  Score=65.41  Aligned_cols=48  Identities=21%  Similarity=0.473  Sum_probs=44.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581          224 KKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       224 kk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llr  271 (470)
                      .+..||++|..+|++++..||-.|.+||.++.+||..+|--||..+-.
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LPi  299 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLPI  299 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcCc
Confidence            356899999999999999999999999999999999999999987633

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.80  E-value=0.011  Score=56.10  Aligned_cols=52  Identities=25%  Similarity=0.510  Sum_probs=43.6

Q ss_pred             cccCCCCHHHHHHHHHHHHHhCC-------hHHHHhhhCCCCCHHHHHHHHHHhHHhhhh
Q 046581          223 IKKDSWSEEEERILVEAHARIGN-------RWAEIAKHIPGRTENSIKNHWNATKRRQNS  275 (470)
Q Consensus       223 ikk~~WT~EED~~Ll~lv~~~G~-------kWs~IAk~LpgRT~~q~KnRw~~llrr~~~  275 (470)
                      .+...||.|||.+|-+.|..++.       -...++..| +||..+|..|||..+|++..
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            45678999999999888887763       267778888 99999999999999997654

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.79  E-value=0.022  Score=46.20  Aligned_cols=51  Identities=33%  Similarity=0.592  Sum_probs=41.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC-----------------hHHHHhhhC-----CCCCHHHHHHHHHHhHHhhhh
Q 046581          225 KDSWSEEEERILVEAHARIGN-----------------RWAEIAKHI-----PGRTENSIKNHWNATKRRQNS  275 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G~-----------------kWs~IAk~L-----pgRT~~q~KnRw~~llrr~~~  275 (470)
                      +..||.+|..+|++++.++..                 -|.+|+..|     +.||..+||.+|..++..-++
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk   74 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK   74 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            457999999999999987631                 399999876     269999999999998776443

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.45  E-value=0.079  Score=62.53  Aligned_cols=98  Identities=17%  Similarity=0.375  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhh-------hh------cc-----------------------
Q 046581          176 WTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERW-------HN------HL-----------------------  219 (470)
Q Consensus       176 WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw-------~~------~L-----------------------  219 (470)
                      |+.-+=..++.+..+||..+-..||..|.|+|...++...       ..      ++                       
T Consensus       827 w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~k  906 (1033)
T PLN03142        827 WSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKK  906 (1033)
T ss_pred             ccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666677888899988899999999999998876322       11      00                       


Q ss_pred             --------------ccccccCCCCHHHHHHHHHHHHHhC-ChHHHHhhh------------CCCCCHHHHHHHHHHhHHh
Q 046581          220 --------------RPDIKKDSWSEEEERILVEAHARIG-NRWAEIAKH------------IPGRTENSIKNHWNATKRR  272 (470)
Q Consensus       220 --------------~p~ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~------------LpgRT~~q~KnRw~~llrr  272 (470)
                                    -+..++..||+|||..|+-.+.+|| .+|.+|-..            |..||+..|..|.+.|++.
T Consensus       907 ~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~  986 (1033)
T PLN03142        907 LDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRL  986 (1033)
T ss_pred             HHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHH
Confidence                          0112345699999999999999999 789999443            3489999999999998876


Q ss_pred             h
Q 046581          273 Q  273 (470)
Q Consensus       273 ~  273 (470)
                      .
T Consensus       987 ~  987 (1033)
T PLN03142        987 I  987 (1033)
T ss_pred             H
Confidence            4

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.36  E-value=0.013  Score=55.52  Aligned_cols=50  Identities=22%  Similarity=0.471  Sum_probs=40.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCc------hHHHHHHHhcCCChhhhhhhhhhcccc
Q 046581          171 LIKGQWTDEEDRKLIKLVKQYGVR------KWAQISERMAGRAGKQCRERWHNHLRP  221 (470)
Q Consensus       171 lkKG~WT~EED~~Ll~lV~~yG~~------~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p  221 (470)
                      .++..||.|||.+|.+.|-+|+..      -...++..| +||..+|..||+.+++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk   58 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRK   58 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHH
Confidence            467889999999999999988532      255666777 89999999999887763

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.28  E-value=0.029  Score=45.17  Aligned_cols=49  Identities=20%  Similarity=0.422  Sum_probs=32.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhC--------Ch-HHHHhhhCC-CCCHHHHHHHHHHhHHhh
Q 046581          225 KDSWSEEEERILVEAHARIG--------NR-WAEIAKHIP-GRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G--------~k-Ws~IAk~Lp-gRT~~q~KnRw~~llrr~  273 (470)
                      +.+||.+||.+|+..|.++.        ++ |.+++..-| .+|-.+.|+||...++.+
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            45899999999999996542        22 999998877 899999999998766543

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.99  E-value=0.026  Score=57.98  Aligned_cols=46  Identities=30%  Similarity=0.670  Sum_probs=42.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHhH
Q 046581          225 KDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATK  270 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~ll  270 (470)
                      -..|+..|+.+|+++....| ++|..||.++..|+...||.+|..+.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y  109 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMY  109 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            45799999999999999999 89999999999999999999998764

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.79  E-value=0.04  Score=44.70  Aligned_cols=47  Identities=30%  Similarity=0.599  Sum_probs=39.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----------------chHHHHHHHhc-----CCChhhhhhhhhhcc
Q 046581          173 KGQWTDEEDRKLIKLVKQYGV----------------RKWAQISERMA-----GRAGKQCRERWHNHL  219 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~----------------~~Ws~IA~~lp-----gRT~~Qcr~Rw~~~L  219 (470)
                      +..||++|...|+++|.+|..                ..|..|+..|.     .|+..||+.+|.++.
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            467999999999999998811                13999999883     699999999998854

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.76  E-value=0.025  Score=58.20  Aligned_cols=50  Identities=18%  Similarity=0.472  Sum_probs=45.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccc
Q 046581          171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~  220 (470)
                      +-.-.|+..|+-+|++...-.|.++|..||.+++.|+...|+++|.+++.
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            44456999999999999999999999999999999999999999988765

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.89  E-value=0.33  Score=40.44  Aligned_cols=48  Identities=31%  Similarity=0.641  Sum_probs=37.8

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------hHHHHhhhCC-----CCCHHHHHHHHHHhHHhhh
Q 046581          227 SWSEEEERILVEAHARI---GN----------RWAEIAKHIP-----GRTENSIKNHWNATKRRQN  274 (470)
Q Consensus       227 ~WT~EED~~Ll~lv~~~---G~----------kWs~IAk~Lp-----gRT~~q~KnRw~~llrr~~  274 (470)
                      .||+++++.|++++.+.   |+          .|..|+..|.     ..+..+|++||..+++.-.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~   66 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYR   66 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHH
Confidence            49999999999998653   21          3999988763     3678999999999887643

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=91.27  E-value=0.26  Score=51.04  Aligned_cols=53  Identities=26%  Similarity=0.528  Sum_probs=42.4

Q ss_pred             cCCCCHHHHHHHHHHHHHh----------CChHHHHhhhC----CCCCHHHHHHHHHHhHHhhhhcc
Q 046581          225 KDSWSEEEERILVEAHARI----------GNRWAEIAKHI----PGRTENSIKNHWNATKRRQNSRR  277 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~----------G~kWs~IAk~L----pgRT~~q~KnRw~~llrr~~~k~  277 (470)
                      ...|+.+|-..||++..+.          +.-|..||+.+    --||+.+||+||..++++.++.+
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k  120 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEK  120 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            3689999999999987543          22499999854    25999999999999998866543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=90.55  E-value=0.51  Score=42.31  Aligned_cols=52  Identities=27%  Similarity=0.446  Sum_probs=41.5

Q ss_pred             ccccCCCCHHHHHHHHHHHHHhCC----hHHHHhhh------------CCCCCHHHHHHHHHHhHHhh
Q 046581          222 DIKKDSWSEEEERILVEAHARIGN----RWAEIAKH------------IPGRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       222 ~ikk~~WT~EED~~Ll~lv~~~G~----kWs~IAk~------------LpgRT~~q~KnRw~~llrr~  273 (470)
                      ..++..||++||.-|+-.+.++|-    .|..|-..            |..||+..|..|-+.|++-.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            456779999999999999999996    79988654            23799999999999998753

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=90.26  E-value=0.24  Score=52.38  Aligned_cols=50  Identities=28%  Similarity=0.415  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCChHHHHhhh-----CCC-CCHHHHHHHHHHhHHhhhh
Q 046581          226 DSWSEEEERILVEAHARIGNRWAEIAKH-----IPG-RTENSIKNHWNATKRRQNS  275 (470)
Q Consensus       226 ~~WT~EED~~Ll~lv~~~G~kWs~IAk~-----Lpg-RT~~q~KnRw~~llrr~~~  275 (470)
                      ..||.+|-+-|+++.+.|.-+|-.||..     ++. ||-.++|.||..+.++-.+
T Consensus       131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~k  186 (445)
T KOG2656|consen  131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLK  186 (445)
T ss_pred             ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHH
Confidence            6799999999999999999999999987     555 9999999999987776443

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=89.93  E-value=0.56  Score=42.06  Aligned_cols=50  Identities=24%  Similarity=0.507  Sum_probs=38.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---chHHHHHHHh------------cCCChhhhhhhhhhcc
Q 046581          170 ALIKGQWTDEEDRKLIKLVKQYGV---RKWAQISERM------------AGRAGKQCRERWHNHL  219 (470)
Q Consensus       170 ~lkKG~WT~EED~~Ll~lV~~yG~---~~Ws~IA~~l------------pgRT~~Qcr~Rw~~~L  219 (470)
                      ..++..||++||.-|+-++.+||.   +.|..|-..+            ..||+..+..|-..+|
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi  110 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLI  110 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHH
Confidence            567888999999999999999998   8999997755            2688888887776544

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=88.55  E-value=0.72  Score=48.73  Aligned_cols=46  Identities=22%  Similarity=0.378  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581          226 DSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       226 ~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llr  271 (470)
                      .+|+.+|-++...++..+|..++.|+..+|.|...|||.+|..--|
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek  411 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEK  411 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhh
Confidence            5799999999999999999999999999999999999999976544

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=86.10  E-value=0.93  Score=47.95  Aligned_cols=44  Identities=23%  Similarity=0.437  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhh
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHN  217 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~  217 (470)
                      --+||.+|-.+..++...+| ..++.|+..+|.|..+|++.+|.+
T Consensus       365 ~~~Ws~~e~ekFYKALs~wG-tdF~LIs~lfP~R~RkqIKaKfi~  408 (507)
T COG5118         365 ALRWSKKEIEKFYKALSIWG-TDFSLISSLFPNRERKQIKAKFIK  408 (507)
T ss_pred             CCcccHHHHHHHHHHHHHhc-chHHHHHHhcCchhHHHHHHHHHH
Confidence            35899999999999999999 599999999999999999999976

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=85.71  E-value=3.2  Score=44.95  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=45.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhhh
Q 046581          224 KKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQN  274 (470)
Q Consensus       224 kk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~~  274 (470)
                      -...||.||-.++-++...||.+..+|-+.||.|+-..+...|...+|...
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~  236 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTRE  236 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhh
Confidence            446899999999999999999999999999999999999999987776543

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=83.87  E-value=1.3  Score=45.85  Aligned_cols=48  Identities=27%  Similarity=0.585  Sum_probs=38.1

Q ss_pred             CCCCCHHHHHHHHHHHHHh----C-----CchHHHHHHHhc----CCChhhhhhhhhhccc
Q 046581          173 KGQWTDEEDRKLIKLVKQY----G-----VRKWAQISERMA----GRAGKQCRERWHNHLR  220 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~y----G-----~~~Ws~IA~~lp----gRT~~Qcr~Rw~~~L~  220 (470)
                      ...|+.+|-..|+++..+.    .     ..-|..||..|.    -||+.||+.+|.++..
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k  114 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKK  114 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            3569999999999998754    1     124999999774    5999999999988543

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=83.72  E-value=2  Score=35.71  Aligned_cols=44  Identities=32%  Similarity=0.647  Sum_probs=34.1

Q ss_pred             CCCHHHHHHHHHHHHHh---CCc---------hHHHHHHHhc-----CCChhhhhhhhhhc
Q 046581          175 QWTDEEDRKLIKLVKQY---GVR---------KWAQISERMA-----GRAGKQCRERWHNH  218 (470)
Q Consensus       175 ~WT~EED~~Ll~lV~~y---G~~---------~Ws~IA~~lp-----gRT~~Qcr~Rw~~~  218 (470)
                      .||+++++.|++++.+.   |..         .|..|+..|.     ..+..||++||..+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l   61 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL   61 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence            49999999999998655   211         3999999884     35679999998653

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=82.77  E-value=2.6  Score=41.16  Aligned_cols=48  Identities=15%  Similarity=0.313  Sum_probs=35.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC--chHHHHHHH-----hcCCChhhhhhhhhhc
Q 046581          171 LIKGQWTDEEDRKLIKLVKQYGV--RKWAQISER-----MAGRAGKQCRERWHNH  218 (470)
Q Consensus       171 lkKG~WT~EED~~Ll~lV~~yG~--~~Ws~IA~~-----lpgRT~~Qcr~Rw~~~  218 (470)
                      -.+-+||.+|+++|.........  ..+.+|-..     -++||+++...+|...
T Consensus        71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lm  125 (199)
T PF13325_consen   71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLM  125 (199)
T ss_pred             cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHH
Confidence            35578999999999998765532  256666432     2489999999999863

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=81.60  E-value=3.6  Score=30.72  Aligned_cols=42  Identities=24%  Similarity=0.386  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581          230 EEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRR  272 (470)
Q Consensus       230 ~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr  272 (470)
                      ++++..++.++...|-.|.+||..+ |.|...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4567788888888899999999999 99999999998876543

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>PLN03138 Protein TOC75; Provisional

Probab=80.60  E-value=0.92  Score=52.35  Aligned_cols=20  Identities=10%  Similarity=0.036  Sum_probs=10.5

Q ss_pred             CCCCCchHHHHHHHHHHHcC
Q 046581          107 STTTTTLEPTSFVDGFFADG  126 (470)
Q Consensus       107 ~g~WT~EED~~Ll~~V~~~G  126 (470)
                      ....|..+=+.-++.|...|
T Consensus       179 G~v~trsqLq~dv~~I~~tG  198 (796)
T PLN03138        179 GGVYTKAQLQKELETLASCG  198 (796)
T ss_pred             CCccCHHHHHHHHHHHHhcC
Confidence            45666655555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	470
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		5e-37
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		5e-37
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		7e-37
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		8e-37
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		1e-34
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		3e-20
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		2e-18
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		1e-15
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-15
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		4e-15
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		4e-15
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		5e-15
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		1e-14
2dim_A	70	Solution Structure Of The Myb_dna-Binding Domain Of		3e-05
1mbe_A	53	Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53		4e-05
1guu_A	52	Crystal Structure Of C-Myb R1 Length = 52		4e-05

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  152 bits (383), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 65/99 (65%), Positives = 87/99 (87%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
           LIKG WT EED+++IKLV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
           EE+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 87/99 (87%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
           LIKG WT EED+++IKLV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
           EE+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  151 bits (382), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 64/99 (64%), Positives = 85/99 (85%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
           L+KG WT EED+K+I+LVK+YG ++W  I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 5   LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
           EE+RI+ EAH  +GNRWAEIAK +PGRT+N++KNHWN+T
Sbjct: 65  EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNST 103

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  151 bits (381), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 65/99 (65%), Positives = 87/99 (87%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
           LIKG WT EED+++IKLV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
           EE+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 85/99 (85%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
           L KG WT EED+++I+ V++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
           EE+RI+ +AH R+GNRWAEIAK +PGRT+N++KNHWN+T
Sbjct: 85  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 68/98 (69%)
Query: 172 IKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEE 231
           +KG +T+ ED  + + VK+ G + W +I+  +  R+ KQCRERW NHL P + K +W+ E
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 232 EERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
           E+  +   + ++G++W+ IAK IPGRT+N+IKN WN++
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSS 98

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 66/94 (70%)
Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEE 232
           K ++T+EED KL +LV +YG + W +IS+ M  R  +QCRERW+N++ P ++ D WS EE
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 233 ERILVEAHARIGNRWAEIAKHIPGRTENSIKNHW 266
           + +L + +A  G +W +I+K +  R++N+I+N W
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 44/48 (91%)
Query: 222 DIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
           ++KK SW+EEE+RIL +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 49

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 44/52 (84%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222
           LIKG WT EED++LIKLV++YG ++W+ I++ + GR GKQCRERWHNHL P+
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 43/47 (91%)
Query: 223 IKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
           +KK SW+EEE+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 47

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222
           LIKG WT EED+++IKLV++YG ++W+ I++ + GR GKQCRERWHNHL P+
Sbjct: 1   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEE 232
           K ++T EED  L + V Q+G   W  I+     R  +QCR+RW N+L P I    W+ EE
Sbjct: 11  KQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 233 ERILVEAHARIGNRWAEIAKHIPGRTENSIKNHW 266
           + +LV+     G +WA IAK  PGRT+  IKN W
Sbjct: 70  DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 44/52 (84%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222
           LIKG WT EED+++I+LV++YG ++W+ I++ + GR GKQCRERWHNHL P+
Sbjct: 1   LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 176 WTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWS 229
           W + ED  L   V +YG  +W++I+  +  ++ KQC+ RW+  L P IKK  WS
Sbjct: 12  WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65

>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222
           L K +WT EED KL KLV+Q G   W  I+  +  R   QC+ RW   L P+
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1 Length = 52

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222
           L K +WT EED KL KLV+Q G   W  I+  +  R   QC+ RW   L P+
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	470
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.97
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.92
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.91
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.91
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.91
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.9
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.82
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.77
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.69
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.68
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.65
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.64
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.64
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.64
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.63
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.63
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.61
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.59
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.58
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.55
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.55
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.55
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.55
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.54
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.54
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.5
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.49
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.47
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.44
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.43
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.42
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.41
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.38
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.38
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.36
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.35
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.34
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.02
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.01
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.33
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.27
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.27
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.26
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.17
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.14
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.11
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.11
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.06
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.05
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.05
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.87
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.84
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.8
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.78
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.73
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.66
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.66
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.5
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.41
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.4
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.39
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.39
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.18
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.02
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.96
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.95
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.89
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.03
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.76
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.75
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.71
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.68
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.43
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.41
2crg_A	70	Metastasis associated protein MTA3; transcription	97.38
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.34
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.24
2crg_A	70	Metastasis associated protein MTA3; transcription	97.21
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.27
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.1
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.04
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.02
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.74
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.49
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	96.39
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.28
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.68
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	89.36
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	87.96
3ntt_A	724	Capsid protein; gene therapy vector, cystic fibros	82.89
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	82.74
3ng9_A	736	Capsid protein; beta barrel, single-stranded DNA V	82.48
4dpv_Z	584	Protein (parvovirus coat protein); complex (virus/	80.27

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=100.00  E-value=4e-41  Score=307.99  Aligned_cols=153  Identities=50%  Similarity=0.917  Sum_probs=111.8

Q ss_pred             CCCCCCchHHHHHHHHHHHcCCCCcccccChhhccccc-CCCcccccCccccccccccccccCCCCCCCCCCCHHHHHHH
Q 046581          106 TSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK-EGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKL  184 (470)
Q Consensus       106 k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~-grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~~L  184 (470)
                      ++++||+|||++|+++|..+|..      +|..||..+ +|+..+|+         .||.++|+|.+++|+||+|||++|
T Consensus         5 ~k~~Wt~eED~~L~~~v~~~g~~------~W~~Ia~~l~~Rt~~qcr---------~Rw~~~l~p~~~~~~Wt~eEd~~L   69 (159)
T 1h89_C            5 GKTRWTREEDEKLKKLVEQNGTD------DWKVIANYLPNRTDVQCQ---------HRWQKVLNPELIKGPWTKEEDQRV   69 (159)
T ss_dssp             --------------------------------------------CHH---------HHHHTTTCTTCCCSCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC------CHHHHHHHcCCCCHHHHH---------HHHHHccCCCcCCCCCChHHHHHH
Confidence            46799999999999999999854      399999865 67777776         599999999999999999999999


Q ss_pred             HHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHH
Q 046581          185 IKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKN  264 (470)
Q Consensus       185 l~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~Kn  264 (470)
                      +++|.+||.++|..||..|||||++||++||.++|+|.+++++||+|||.+|++++.+||++|+.||++|||||+++||+
T Consensus        70 ~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~kn  149 (159)
T 1h89_C           70 IKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKN  149 (159)
T ss_dssp             HHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHH
Confidence            99999999778999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHhh
Q 046581          265 HWNATKRRQ  273 (470)
Q Consensus       265 Rw~~llrr~  273 (470)
                      ||+.++|++
T Consensus       150 r~~~~~r~~  158 (159)
T 1h89_C          150 HWNSTMRRK  158 (159)
T ss_dssp             HHHTTTCC-
T ss_pred             HHHHHHhcc
Confidence            999998764

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=1.6e-35  Score=262.08  Aligned_cols=126  Identities=52%  Similarity=1.022  Sum_probs=103.2

Q ss_pred             ccc-ccCCCcccccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhh
Q 046581          139 DII-YKEGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHN  217 (470)
Q Consensus       139 IA~-~~grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~  217 (470)
                      ||. ++||+..+|+         .||.++|+|.+++|+||+|||++|+++|.+||.++|..||..|||||++||++||.+
T Consensus         1 Ia~~~~~Rt~~qC~---------~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~   71 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQ---------HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN   71 (128)
T ss_dssp             ------------------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             CccccCCCCHHHHH---------HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence            344 5677777777         599999999999999999999999999999998789999999999999999999999


Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581          218 HLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       218 ~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~  273 (470)
                      +|+|.+++++||+|||++|+++|.+||++|+.||++|||||+++||+||+.++|++
T Consensus        72 ~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           72 HLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             TTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             hcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999998764

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.97  E-value=5.4e-32  Score=231.41  Aligned_cols=104  Identities=64%  Similarity=1.264  Sum_probs=99.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHH
Q 046581          170 ALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAE  249 (470)
Q Consensus       170 ~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~  249 (470)
                      .+++|+||+|||++|+++|.+||..+|..||+.|||||++||++||.++|+|.+++++||+|||.+|+++|.+||++|+.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            37899999999999999999999878999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhCCCCCHHHHHHHHHHhHHhh
Q 046581          250 IAKHIPGRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       250 IAk~LpgRT~~q~KnRw~~llrr~  273 (470)
                      ||++|||||+++|++||+.+++++
T Consensus        81 Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           81 IAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHcCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999998764

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.97  E-value=6.8e-32  Score=232.28  Aligned_cols=104  Identities=39%  Similarity=0.806  Sum_probs=100.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHhh
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAK  252 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk  252 (470)
                      ||+||+|||++|+++|.+||..+|..||..|||||++||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            68999999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHHhHHhhhhc
Q 046581          253 HIPGRTENSIKNHWNATKRRQNSR  276 (470)
Q Consensus       253 ~LpgRT~~q~KnRw~~llrr~~~k  276 (470)
                      +|||||+++||+||+.++++..+.
T Consensus        81 ~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HCCCCCHHHHHHHHHHHHhhHHHh
Confidence            999999999999999999876543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=8.8e-31  Score=231.60  Aligned_cols=105  Identities=39%  Similarity=0.724  Sum_probs=100.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChH
Q 046581          168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRW  247 (470)
Q Consensus       168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kW  247 (470)
                      .+..++|+||+|||++|+++|.+||. +|..||+.||||+++||++||.++|+|.+++++||+|||++|+++|.+||++|
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W   84 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW   84 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence            45678999999999999999999996 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581          248 AEIAKHIPGRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       248 s~IAk~LpgRT~~q~KnRw~~llrr~  273 (470)
                      +.||++|||||+++||+||+.++++.
T Consensus        85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           85 AIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999998764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=3.5e-31  Score=235.50  Aligned_cols=108  Identities=41%  Similarity=0.839  Sum_probs=102.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHh
Q 046581          172 IKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIA  251 (470)
Q Consensus       172 kKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IA  251 (470)
                      .||+||+|||++|+++|..||..+|..||..|||||+.||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            37999999999999999999988999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHhHHhhhhcccc
Q 046581          252 KHIPGRTENSIKNHWNATKRRQNSRRKN  279 (470)
Q Consensus       252 k~LpgRT~~q~KnRw~~llrr~~~k~k~  279 (470)
                      ++|||||+++|++||+.+++++......
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~  108 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSN  108 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999887665443

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=1.9e-28  Score=224.03  Aligned_cols=115  Identities=33%  Similarity=0.695  Sum_probs=70.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCC-hHHH
Q 046581          171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGN-RWAE  249 (470)
Q Consensus       171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~-kWs~  249 (470)
                      +++++||+|||++|+++|.+||..+|..||..||||++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~   83 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV   83 (159)
T ss_dssp             ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence            678999999999999999999988999999999999999999999999999999999999999999999999996 6999


Q ss_pred             HhhhCCCCCHHHHHHHHHHhHHhhhhccccchhhhh
Q 046581          250 IAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEKQ  285 (470)
Q Consensus       250 IAk~LpgRT~~q~KnRw~~llrr~~~k~k~~~~e~~  285 (470)
                      ||+.|||||+.||++||..++....++.+++.+|+.
T Consensus        84 Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~  119 (159)
T 1h89_C           84 IAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDR  119 (159)
T ss_dssp             HHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHH
Confidence            999999999999999999999887777777766653

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.92  E-value=3.8e-26  Score=203.03  Aligned_cols=128  Identities=22%  Similarity=0.391  Sum_probs=102.3

Q ss_pred             CCCCCchHHHHHHHHHHHcCCCCcccccChhhccccc-CCCcccccCccccccccccccccCCCCCCCCCCCHHHHHHHH
Q 046581          107 STTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK-EGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLI  185 (470)
Q Consensus       107 ~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~-grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~~Ll  185 (470)
                      +|+||+|||+.|+++|..||..      +|..||..+ +|+..+||         .||.++|+|.+++|+||+|||++|+
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~------~W~~Ia~~~~~Rt~~qcr---------~Rw~~~l~p~~~~~~Wt~eEd~~L~   66 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQ------NWPRITSFLPNRSPKQCR---------ERWFNHLDPAVVKHAWTPEEDETIF   66 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSC------CGGGGTTSCTTSCHHHHH---------HHHHHHTSTTCCCSCCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcC------CHHHHHHHHCCCCHHHHH---------HHHhhccCccccCCCCCHHHHHHHH
Confidence            5799999999999999999854      399999855 77888887         6999999999999999999999999


Q ss_pred             HHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhC
Q 046581          186 KLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHI  254 (470)
Q Consensus       186 ~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~L  254 (470)
                      ++|.+|| .+|+.||+.|||||+.||++||+++|++.+..++|+.+-   |+ .......+|+.|++.|
T Consensus        67 ~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~---~~-p~~~kk~~~~~i~k~~  130 (131)
T 3zqc_A           67 RNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI---LL-PDRSKKRKAADVPKKL  130 (131)
T ss_dssp             HHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC---CC-CCCC------------
T ss_pred             HHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc---cC-chhhhhhhhhhcchhc
Confidence            9999999 699999999999999999999999999999999888752   11 1122245688888765

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.91  E-value=2.9e-25  Score=189.65  Aligned_cols=101  Identities=22%  Similarity=0.392  Sum_probs=91.9

Q ss_pred             CCCCCCchHHHHHHHHHHHcCCCCcccccChhhccccc-CCCcccccCccccccccccccccCCCCCCCCCCCHHHHHHH
Q 046581          106 TSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK-EGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKL  184 (470)
Q Consensus       106 k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~-grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~~L  184 (470)
                      ++++||+|||+.|+++|..||..      +|..||.++ +|+..+|+         .||.++|+|.+++|+||+|||.+|
T Consensus         3 ~k~~WT~eED~~L~~~v~~~g~~------~W~~Ia~~l~~Rt~~qcr---------~Rw~~~l~p~~~~~~Wt~eEd~~L   67 (105)
T 1gv2_A            3 IKGPWTKEEDQRVIKLVQKYGPK------RWSVIAKHLKGRIGKQCR---------ERWHNHLNPEVKKTSWTEEEDRII   67 (105)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHCTT------CHHHHHTTSTTCCHHHHH---------HHHHHTTCCCCCCCCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC------cHHHHhhhhcCCCHHHHH---------HHHHhccCCcccccCCCHHHHHHH
Confidence            56899999999999999999964      499999865 77888887         599999999999999999999999


Q ss_pred             HHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccc
Q 046581          185 IKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD  222 (470)
Q Consensus       185 l~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~  222 (470)
                      +++|.+|| .+|+.||+.|||||+.||++||+.+|++.
T Consensus        68 ~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           68 YQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            99999999 69999999999999999999999988754

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.91  E-value=4.2e-25  Score=189.92  Aligned_cols=101  Identities=23%  Similarity=0.334  Sum_probs=91.8

Q ss_pred             CCCCCchHHHHHHHHHHHcCCCCcccccChhhccccc-CCCcccccCccccccccccccccCCCCCCCCCCCHHHHHHHH
Q 046581          107 STTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK-EGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLI  185 (470)
Q Consensus       107 ~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~-grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~~Ll  185 (470)
                      +++||+|||+.|+++|..||..      +|..||.++ +|+..+||         .||.++|+|.+++|+||+|||.+|+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~------~W~~Ia~~~~~Rt~~qcr---------~Rw~~~L~p~i~~~~WT~eEd~~L~   65 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAK------DWIRISQLMITRNPRQCR---------ERWNNYINPALRTDPWSPEEDMLLD   65 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSS------CHHHHHHHTTTSCHHHHH---------HHHHHHSSSCCTTCCCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC------CHHHHhhhcCCCCHHHHH---------HHHHHHHcccccccccCHHHHHHHH
Confidence            4689999999999999999954      499999855 67778887         5999999999999999999999999


Q ss_pred             HHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcccccc
Q 046581          186 KLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDI  223 (470)
Q Consensus       186 ~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~i  223 (470)
                      ++|.+|| .+|..||+.|||||+.||++||+.++++..
T Consensus        66 ~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~  102 (107)
T 2k9n_A           66 QKYAEYG-PKWNKISKFLKNRSDNNIRNRWMMIARHRA  102 (107)
T ss_dssp             HHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhC-cCHHHHHHHCCCCCHHHHHHHHHHHHhhHH
Confidence            9999999 599999999999999999999998877543

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.91  E-value=8.6e-25  Score=193.24  Aligned_cols=119  Identities=19%  Similarity=0.348  Sum_probs=96.0

Q ss_pred             CCCCccccccCCCccCCCCCCCCCchHHHHHHHHHHHcCCCCcccccChhhcccc-cCCCcccccCcccccccccccccc
Q 046581           88 TSGASTAAAYGGQHEALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIY-KEGSKSACNNNKGMIGHKRSNKKG  166 (470)
Q Consensus        88 ~s~~~~~~~~g~~~~~~~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~-~grs~~~cR~~~q~~~~~rRw~~~  166 (470)
                      .++.++-..+.....+..++++||+|||+.|+++|..||..      +|..||.+ +||+..+|+         .||.++
T Consensus         8 Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~------~W~~Ia~~l~~Rt~~qcr---------~Rw~~~   72 (128)
T 1h8a_C            8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPK------RWSDIAKHLKGRIGKQCR---------ERWHNH   72 (128)
T ss_dssp             --------------CTTCCCSCCCHHHHHHHHHHHHHTCSC------CHHHHHHHSSSCCHHHHH---------HHHHHT
T ss_pred             CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCC------CHHHHHHHhcCCcHHHHH---------HHHHHh
Confidence            34444555454456677788999999999999999999954      39999995 478888887         599999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccc
Q 046581          167 ASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD  222 (470)
Q Consensus       167 l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~  222 (470)
                      |+|.+++|+||+|||++|+++|.+|| .+|+.||+.|||||+.||++||+.+|+..
T Consensus        73 l~p~~~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           73 LNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             TCSSSCCSCCCHHHHHHHHHHHHHHC-SCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             cccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999 69999999999999999999999988754

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.90  E-value=8.8e-25  Score=193.14  Aligned_cols=101  Identities=22%  Similarity=0.397  Sum_probs=93.0

Q ss_pred             CCCCCCCCCchHHHHHHHHHHHcCCCCcccccChhhccccc-CCCcccccCccccccccccccccCCCCCCCCCCCHHHH
Q 046581          103 ALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK-EGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEED  181 (470)
Q Consensus       103 ~~~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~-grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED  181 (470)
                      +..++++||+|||++|+++|..||.+       |..||..+ +|+..+||         .||.++|+|.+++|+||+|||
T Consensus         7 ~~~kk~~WT~eED~~L~~~v~~~G~~-------W~~Ia~~~~~Rt~~qcr---------~Rw~~~l~p~~~~~~WT~eEd   70 (126)
T 3osg_A            7 KAAKKQKFTPEEDEMLKRAVAQHGSD-------WKMIAATFPNRNARQCR---------DRWKNYLAPSISHTPWTAEED   70 (126)
T ss_dssp             CBCSSCCCCHHHHHHHHHHHHHHTTC-------HHHHHHTCTTCCHHHHH---------HHHHHHTSTTSCCSCCCHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC-------HHHHHHHcCCCCHHHHH---------HHHhhhcccccccccCCHHHH
Confidence            44677899999999999999999963       99999855 78888887         699999999999999999999


Q ss_pred             HHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccc
Q 046581          182 RKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       182 ~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~  220 (470)
                      ++|+++|.+|| .+|+.||+.|||||+.||++||..+++
T Consensus        71 ~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~~  108 (126)
T 3osg_A           71 ALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTISN  108 (126)
T ss_dssp             HHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            99999999999 699999999999999999999998775

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=5.9e-21  Score=152.46  Aligned_cols=67  Identities=33%  Similarity=0.697  Sum_probs=64.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHH
Q 046581          167 ASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEE  233 (470)
Q Consensus       167 l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED  233 (470)
                      ..|.+++|+||+|||++|+++|.+||.++|..||..|+|||++||++||+++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            3578899999999999999999999988999999999999999999999999999999999999997

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.77  E-value=5.1e-19  Score=170.94  Aligned_cols=105  Identities=22%  Similarity=0.331  Sum_probs=92.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCc-----hHHHHHHHhcCCChhhhhhhhhhccccccc-------------------
Q 046581          169 VALIKGQWTDEEDRKLIKLVKQYGVR-----KWAQISERMAGRAGKQCRERWHNHLRPDIK-------------------  224 (470)
Q Consensus       169 p~lkKG~WT~EED~~Ll~lV~~yG~~-----~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ik-------------------  224 (470)
                      +.+++++||+|||++|+++|.++|..     .|..||+.|||||+.|||+||+.+|++.++                   
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~   83 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   83 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence            46789999999999999999999853     299999999999999999999999999986                   


Q ss_pred             ----------cCCCCHHHHHHHHHHHHH-h--------------------------------CC----------------
Q 046581          225 ----------KDSWSEEEERILVEAHAR-I--------------------------------GN----------------  245 (470)
Q Consensus       225 ----------k~~WT~EED~~Ll~lv~~-~--------------------------------G~----------------  245 (470)
                                +..||.+||..|+..+.+ +                                +.                
T Consensus        84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  163 (246)
T 1ign_A           84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ  163 (246)
T ss_dssp             CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred             eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence                      789999999999999877 1                                11                


Q ss_pred             ---------hHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581          246 ---------RWAEIAKHIPGRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       246 ---------kWs~IAk~LpgRT~~q~KnRw~~llrr~  273 (470)
                               .|.+||+.+|+||.+++|+||+.+++..
T Consensus       164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                     6999999999999999999999998765

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.69  E-value=3e-17  Score=127.11  Aligned_cols=57  Identities=33%  Similarity=0.615  Sum_probs=54.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccc
Q 046581          168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIK  224 (470)
Q Consensus       168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ik  224 (470)
                      +|.+++++||+|||++|+++|.+||.++|..||+.|+|||+.||++||+++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            578999999999999999999999977999999999999999999999999999875

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.68  E-value=4.8e-17  Score=143.31  Aligned_cols=84  Identities=17%  Similarity=0.340  Sum_probs=78.9

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHh----cCCChhhhhhhhhhccc-----cccccC-CCCHHHHHH
Q 046581          166 GASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERM----AGRAGKQCRERWHNHLR-----PDIKKD-SWSEEEERI  235 (470)
Q Consensus       166 ~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~l----pgRT~~Qcr~Rw~~~L~-----p~ikk~-~WT~EED~~  235 (470)
                      .+.+..++++||+|||+.|+++|.+||.++|+.|++.+    ++||+.+|++||+++|+     |.++++ +|+++|+.+
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            35678899999999999999999999988999999985    89999999999999998     999998 999999999


Q ss_pred             HHHHHHHhCChHHH
Q 046581          236 LVEAHARIGNRWAE  249 (470)
Q Consensus       236 Ll~lv~~~G~kWs~  249 (470)
                      |++++..+|++|++
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999976

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.65  E-value=7.8e-17  Score=121.34  Aligned_cols=52  Identities=63%  Similarity=1.317  Sum_probs=49.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccc
Q 046581          171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD  222 (470)
Q Consensus       171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~  222 (470)
                      +++|+||+|||++|+++|.+||..+|..||+.|+|||++||++||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999778999999999999999999999999984

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.64  E-value=1e-16  Score=120.54  Aligned_cols=52  Identities=44%  Similarity=0.834  Sum_probs=48.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccc
Q 046581          171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD  222 (470)
Q Consensus       171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~  222 (470)
                      +++++||+|||++|+++|.+||..+|..||+.|||||+.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999779999999999999999999999999984

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.64  E-value=1.7e-16  Score=126.30  Aligned_cols=63  Identities=22%  Similarity=0.407  Sum_probs=58.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhc--CCChhhhhhhhhhccccccccCCCC
Q 046581          167 ASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMA--GRAGKQCRERWHNHLRPDIKKDSWS  229 (470)
Q Consensus       167 l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp--gRT~~Qcr~Rw~~~L~p~ikk~~WT  229 (470)
                      ..+..++++||+|||++|+++|.+||.++|..||..|+  |||+.||++||+++|+|.+.++..+
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            45677899999999999999999999889999999999  9999999999999999999987764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.64  E-value=1e-16  Score=129.78  Aligned_cols=60  Identities=23%  Similarity=0.316  Sum_probs=48.4

Q ss_pred             hhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581          211 CRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       211 cr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llr  271 (470)
                      +.-||.++|+|.+++++||+|||++|+++|.++|++|+.||+.| |||+++||+||+.+.+
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999 9999999999998754

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.2e-16  Score=125.97  Aligned_cols=60  Identities=30%  Similarity=0.566  Sum_probs=56.3

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCC
Q 046581          166 GASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDS  227 (470)
Q Consensus       166 ~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~  227 (470)
                      +|+|.+++++||+|||++|+++|+.||. +|.+||+ ++|||++||++||.++|+|.++++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            6899999999999999999999999995 9999999 8899999999999999999887653

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.63  E-value=5.4e-16  Score=136.78  Aligned_cols=79  Identities=18%  Similarity=0.308  Sum_probs=73.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHh----cCCChhhhhhhhhhcc-----ccccccCCCCHHH-HHHHH
Q 046581          168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERM----AGRAGKQCRERWHNHL-----RPDIKKDSWSEEE-ERILV  237 (470)
Q Consensus       168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~l----pgRT~~Qcr~Rw~~~L-----~p~ikk~~WT~EE-D~~Ll  237 (470)
                      ....++++||+|||+.|+++|++||.++|+.|++.+    ++||+.+|++||++++     +|.++++.|+++| +.+|+
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~  105 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL  105 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence            455678999999999999999999988999999975    7999999999999999     7999999999999 89999


Q ss_pred             HHHHHhCCh
Q 046581          238 EAHARIGNR  246 (470)
Q Consensus       238 ~lv~~~G~k  246 (470)
                      +++..+|++
T Consensus       106 ~~h~~~g~~  114 (122)
T 2roh_A          106 AAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhhH
Confidence            999999975

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.61  E-value=5.3e-16  Score=125.50  Aligned_cols=61  Identities=26%  Similarity=0.370  Sum_probs=48.2

Q ss_pred             ccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccc
Q 046581          161 RSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIK  224 (470)
Q Consensus       161 rRw~~~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ik  224 (470)
                      .||.++|+|.+++|+||+|||++|+++|.+|| .+|+.||+.| |||+.||++||+. |....+
T Consensus        11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-gRt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             --------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred             cceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence            69999999999999999999999999999999 5799999999 9999999999985 444433

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.59  E-value=1.1e-15  Score=118.61  Aligned_cols=55  Identities=18%  Similarity=0.458  Sum_probs=52.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccc
Q 046581          168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD  222 (470)
Q Consensus       168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~  222 (470)
                      .+.+.+++||+|||++|+++|.+||.++|.+||+.||+||++||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            5678999999999999999999999889999999999999999999999999865

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.58  E-value=1e-15  Score=120.67  Aligned_cols=54  Identities=30%  Similarity=0.536  Sum_probs=49.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhc--CCChhhhhhhhhhccccccc
Q 046581          171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMA--GRAGKQCRERWHNHLRPDIK  224 (470)
Q Consensus       171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp--gRT~~Qcr~Rw~~~L~p~ik  224 (470)
                      .+|++||+|||++|+++|.+||.++|+.||+.+|  |||+.||++||+++++|.++
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            4789999999999999999999889999999976  99999999999999998764

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=4.4e-15  Score=117.08  Aligned_cols=58  Identities=29%  Similarity=0.428  Sum_probs=54.9

Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhhhhc
Q 046581          218 HLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSR  276 (470)
Q Consensus       218 ~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~~~k  276 (470)
                      +|+|.+++++||+|||++|+++|.++|.+|..||+ ++|||+.|||+||+.++++..++
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~   59 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR   59 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence            69999999999999999999999999999999999 88999999999999999886654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.55  E-value=5.1e-15  Score=118.80  Aligned_cols=58  Identities=22%  Similarity=0.320  Sum_probs=54.5

Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhhhhc
Q 046581          219 LRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSR  276 (470)
Q Consensus       219 L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~~~k  276 (470)
                      ++|.+++++||+|||++|+++|.+||.+|..||++|||||+.|||+||+.++++..+.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999886554

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.55  E-value=3.5e-15  Score=119.71  Aligned_cols=58  Identities=19%  Similarity=0.331  Sum_probs=54.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcccccccc
Q 046581          167 ASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKK  225 (470)
Q Consensus       167 l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk  225 (470)
                      .+|.+++++||+|||++|+++|.+||. +|..||+.|||||+.||++||+++|++.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999995 9999999999999999999999999887665

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.55  E-value=3.8e-15  Score=112.67  Aligned_cols=49  Identities=27%  Similarity=0.560  Sum_probs=46.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhc--CCChhhhhhhhhhccc
Q 046581          172 IKGQWTDEEDRKLIKLVKQYGVRKWAQISERMA--GRAGKQCRERWHNHLR  220 (470)
Q Consensus       172 kKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp--gRT~~Qcr~Rw~~~L~  220 (470)
                      ++++||+|||++|+++|.+||.++|..||..|+  |||+.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            579999999999999999999889999999999  9999999999999876

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=5.4e-15  Score=119.27  Aligned_cols=61  Identities=26%  Similarity=0.368  Sum_probs=56.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-----chHHHHHHHhcCCChhhhhhhhhhccccccccCCC
Q 046581          168 SVALIKGQWTDEEDRKLIKLVKQYGV-----RKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSW  228 (470)
Q Consensus       168 ~p~lkKG~WT~EED~~Ll~lV~~yG~-----~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~W  228 (470)
                      .|.+.+++||+|||++|+++|.+||.     .+|.+||+.|+|||+.||++||+++|.+.++.+..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            57889999999999999999999996     79999999999999999999999999988776543

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.54  E-value=7.6e-15  Score=113.29  Aligned_cols=52  Identities=21%  Similarity=0.559  Sum_probs=48.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhc-CCChhhhhhhhhhcc
Q 046581          168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMA-GRAGKQCRERWHNHL  219 (470)
Q Consensus       168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp-gRT~~Qcr~Rw~~~L  219 (470)
                      ...+.+++||+|||++|+++|.+||.++|..||+.|+ +||++||++||.+++
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            4457789999999999999999999889999999999 999999999999875

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.3e-14  Score=115.64  Aligned_cols=65  Identities=20%  Similarity=0.354  Sum_probs=59.3

Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHhHHhhhhccccchhhh
Q 046581          220 RPDIKKDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEK  284 (470)
Q Consensus       220 ~p~ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~llrr~~~k~k~~~~e~  284 (470)
                      .|.+++++||+|||++|+++|.+|| ++|..||.+|++||+.||++||+.+++...++.+++.+|+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4678999999999999999999999 7999999999999999999999999998888877776553

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.49  E-value=2.3e-14  Score=110.77  Aligned_cols=54  Identities=24%  Similarity=0.471  Sum_probs=50.4

Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581          220 RPDIKKDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       220 ~p~ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~llrr~  273 (470)
                      +|.+++++||+|||++|+++|.+|| ++|..||++||+||+.||++||+.+++..
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   57 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP   57 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence            4778999999999999999999999 69999999999999999999999988653

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.47  E-value=5.3e-14  Score=105.66  Aligned_cols=50  Identities=26%  Similarity=0.563  Sum_probs=45.7

Q ss_pred             cccCCCCHHHHHHHHHHHHHhCC-hHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581          223 IKKDSWSEEEERILVEAHARIGN-RWAEIAKHIPGRTENSIKNHWNATKRR  272 (470)
Q Consensus       223 ikk~~WT~EED~~Ll~lv~~~G~-kWs~IAk~LpgRT~~q~KnRw~~llrr  272 (470)
                      +++++||+|||++|+++|.+||. +|..||+.|||||+.||++||+.+++.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999998 999999999999999999999998753

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.44  E-value=1.2e-13  Score=104.50  Aligned_cols=49  Identities=29%  Similarity=0.599  Sum_probs=46.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCC--CCCHHHHHHHHHHhHHh
Q 046581          224 KKDSWSEEEERILVEAHARIG-NRWAEIAKHIP--GRTENSIKNHWNATKRR  272 (470)
Q Consensus       224 kk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~Lp--gRT~~q~KnRw~~llrr  272 (470)
                      ++++||+|||++|+++|.+|| ++|+.||..||  |||+.||++||..++|.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 69999999999  99999999999999874

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.43  E-value=1.3e-13  Score=103.68  Aligned_cols=49  Identities=31%  Similarity=0.720  Sum_probs=45.9

Q ss_pred             cccCCCCHHHHHHHHHHHHHhCC-hHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581          223 IKKDSWSEEEERILVEAHARIGN-RWAEIAKHIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       223 ikk~~WT~EED~~Ll~lv~~~G~-kWs~IAk~LpgRT~~q~KnRw~~llr  271 (470)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||..+++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999997 69999999999999999999998775

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.42  E-value=1.8e-13  Score=106.19  Aligned_cols=53  Identities=23%  Similarity=0.422  Sum_probs=49.0

Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581          220 RPDIKKDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATKRR  272 (470)
Q Consensus       220 ~p~ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~llrr  272 (470)
                      .+.+.+++||+|||++|+++|.+|| ++|.+||++||+||+.||++||..++..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            3578899999999999999999999 7999999999999999999999987653

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.41  E-value=2.9e-13  Score=107.57  Aligned_cols=58  Identities=24%  Similarity=0.457  Sum_probs=52.6

Q ss_pred             cccccccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCC--CCCHHHHHHHHHHhHHhhhhc
Q 046581          219 LRPDIKKDSWSEEEERILVEAHARIG-NRWAEIAKHIP--GRTENSIKNHWNATKRRQNSR  276 (470)
Q Consensus       219 L~p~ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~Lp--gRT~~q~KnRw~~llrr~~~k  276 (470)
                      ..+..++++||+|||++|+++|.+|| ++|+.||..|+  |||+.||++||+.+++....+
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k   64 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS   64 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence            45667889999999999999999999 69999999999  999999999999999876543

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.38  E-value=8.5e-13  Score=109.20  Aligned_cols=68  Identities=18%  Similarity=0.410  Sum_probs=59.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHHHHH----hcCCChhhhhhhhhhcc-----ccccccC-CCCHHHHHHHHHHHH
Q 046581          174 GQWTDEEDRKLIKLVKQYGVRKWAQISER----MAGRAGKQCRERWHNHL-----RPDIKKD-SWSEEEERILVEAHA  241 (470)
Q Consensus       174 G~WT~EED~~Ll~lV~~yG~~~Ws~IA~~----lpgRT~~Qcr~Rw~~~L-----~p~ikk~-~WT~EED~~Ll~lv~  241 (470)
                      ++||+|||+.|+++|++||.++|+.|++.    |++||+.+|++||+++|     +|.++++ +..++....++.++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a   78 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA   78 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence            47999999999999999998899999996    89999999999999988     5776664 677777777887775

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=4.2e-13  Score=108.14  Aligned_cols=55  Identities=18%  Similarity=0.321  Sum_probs=50.6

Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhC------ChHHHHhhhCCCCCHHHHHHHHHHhHHhhh
Q 046581          220 RPDIKKDSWSEEEERILVEAHARIG------NRWAEIAKHIPGRTENSIKNHWNATKRRQN  274 (470)
Q Consensus       220 ~p~ikk~~WT~EED~~Ll~lv~~~G------~kWs~IAk~LpgRT~~q~KnRw~~llrr~~  274 (470)
                      +|.+++++||+|||++|+++|.+||      ++|..||.+|+|||+.||++||+.++++..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999      789999999999999999999988776644

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.36  E-value=8.4e-13  Score=104.03  Aligned_cols=51  Identities=35%  Similarity=0.657  Sum_probs=46.2

Q ss_pred             cccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCC--CCCHHHHHHHHHHhHHhh
Q 046581          223 IKKDSWSEEEERILVEAHARIG-NRWAEIAKHIP--GRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       223 ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~Lp--gRT~~q~KnRw~~llrr~  273 (470)
                      .++++||+|||++|+++|.+|| ++|+.||+.+|  +||+.||++||+.++|..
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            4778999999999999999999 58999999876  999999999999998754

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.35  E-value=6.5e-13  Score=114.36  Aligned_cols=77  Identities=16%  Similarity=0.308  Sum_probs=65.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHh----cCCChhhhhhhhhhcc-----ccccccCCCCHHHHHH-HH
Q 046581          168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERM----AGRAGKQCRERWHNHL-----RPDIKKDSWSEEEERI-LV  237 (470)
Q Consensus       168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~l----pgRT~~Qcr~Rw~~~L-----~p~ikk~~WT~EED~~-Ll  237 (470)
                      ....++++||+|||+.|+++|.+||.++|+.|++.+    ++||+.+|++||++++     +|.++++.-+++|-.. ++
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~   87 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL   87 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence            456789999999999999999999988999999965    8999999999999999     6888898888776554 66


Q ss_pred             HHHHHhC
Q 046581          238 EAHARIG  244 (470)
Q Consensus       238 ~lv~~~G  244 (470)
                      +++..++
T Consensus        88 ~~~~~~~   94 (105)
T 2aje_A           88 NAHGYWT   94 (105)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665544

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.34  E-value=1.3e-12  Score=100.75  Aligned_cols=49  Identities=29%  Similarity=0.624  Sum_probs=45.4

Q ss_pred             cccccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCC-CCCHHHHHHHHHHh
Q 046581          221 PDIKKDSWSEEEERILVEAHARIG-NRWAEIAKHIP-GRTENSIKNHWNAT  269 (470)
Q Consensus       221 p~ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~Lp-gRT~~q~KnRw~~l  269 (470)
                      ..+.+++||+|||++|+++|.+|| ++|..||++|+ +||+.||++||..+
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~   55 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT   55 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            346688999999999999999999 89999999999 99999999999865

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.02  E-value=1e-13  Score=115.81  Aligned_cols=56  Identities=27%  Similarity=0.429  Sum_probs=52.8

Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581          218 HLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       218 ~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~  273 (470)
                      .+.|.+++++||+|||++|+++|.+||++|+.||.+|||||++||++||+.++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            46788999999999999999999999999999999999999999999999988764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.01  E-value=1.2e-13  Score=115.47  Aligned_cols=55  Identities=22%  Similarity=0.369  Sum_probs=51.6

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcccc
Q 046581          166 GASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRP  221 (470)
Q Consensus       166 ~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p  221 (470)
                      .+.|.+.+|+||+|||++|+++|..||. +|..||..|||||+.||++||+++|+.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            4678999999999999999999999995 899999999999999999999998874

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.33  E-value=1.6e-12  Score=106.57  Aligned_cols=50  Identities=22%  Similarity=0.487  Sum_probs=47.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhc
Q 046581          168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNH  218 (470)
Q Consensus       168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~  218 (470)
                      .....+++||+|||++|+++|.+|| ++|.+||+.|++||+.||++||.++
T Consensus        13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            4556789999999999999999999 8999999999999999999999988

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.27  E-value=1.8e-12  Score=104.86  Aligned_cols=53  Identities=17%  Similarity=0.413  Sum_probs=48.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC---CchHHHHHHHhcCCChhhhhhhhhhccc
Q 046581          168 SVALIKGQWTDEEDRKLIKLVKQYG---VRKWAQISERMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       168 ~p~lkKG~WT~EED~~Ll~lV~~yG---~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~  220 (470)
                      .+...+++||+|||++|++++..||   ..+|.+||+.|||||++||++||..++.
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3567889999999999999999999   4689999999999999999999998765

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.27  E-value=4.4e-12  Score=102.53  Aligned_cols=51  Identities=14%  Similarity=0.436  Sum_probs=47.3

Q ss_pred             cccccCCCCHHHHHHHHHHHHHhC----ChHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581          221 PDIKKDSWSEEEERILVEAHARIG----NRWAEIAKHIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       221 p~ikk~~WT~EED~~Ll~lv~~~G----~kWs~IAk~LpgRT~~q~KnRw~~llr  271 (470)
                      +.+.+++||.+||.+|++++..||    .+|.+||++|||||..+|++||+.+++
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456788999999999999999999    689999999999999999999999875

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.26  E-value=3.3e-12  Score=123.63  Aligned_cols=106  Identities=16%  Similarity=0.144  Sum_probs=86.6

Q ss_pred             CCCCCCCchHHHHHHHHHHHcCCCCcccccChhhccc-ccCCCcccccCccccccccccccccCCCCCC-----------
Q 046581          105 RTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDII-YKEGSKSACNNNKGMIGHKRSNKKGASVALI-----------  172 (470)
Q Consensus       105 ~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~-~~grs~~~cR~~~q~~~~~rRw~~~l~p~lk-----------  172 (470)
                      .++++||+|||+.|+++|.++|... .....|++||. ++||+..+||         .||..+|.+.+.           
T Consensus         6 ~~k~~FT~EED~~Ile~v~k~Gn~r-~ghk~W~~IAk~LpGRT~nsIR---------nRw~~~L~~~ln~vy~~ded~~L   75 (246)
T 1ign_A            6 HNKASFTDEEDEFILDVVRKNPTRR-TTHTLYDEISHYVPNHTGNSIR---------HRFRVYLSKRLEYVYEVDKFGKL   75 (246)
T ss_dssp             --CCCCCHHHHHHHHHHHHTSGGGT-TCSHHHHHHTTTSTTSCHHHHH---------HHHHHTTGGGCCCEECBCTTSCB
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCcCc-cccccHHHHHHHcCCCCHHHHH---------HHHHHHHhhhcccccccCcchhh
Confidence            3457999999999999999998531 11234999998 6788889998         488888888775           


Q ss_pred             ------------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------
Q 046581          173 ------------------KGQWTDEEDRKLIKLVKQ-Y--------------------------------GV--------  193 (470)
Q Consensus       173 ------------------KG~WT~EED~~Ll~lV~~-y--------------------------------G~--------  193 (470)
                                        |.+||.|||-.|+..+.+ +                                +.        
T Consensus        76 i~d~~Gn~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (246)
T 1ign_A           76 VRDDDGNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEP  155 (246)
T ss_dssp             CBCTTSCBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC--------------------------
T ss_pred             hhccCCCceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCc
Confidence                              899999999999999987 1                                11        


Q ss_pred             ----------------chHHHHHHHhcCCChhhhhhhhhhccc
Q 046581          194 ----------------RKWAQISERMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       194 ----------------~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~  220 (470)
                                      ..|..||+.+|+||..+.|+||...|.
T Consensus       156 ~f~~~~~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~  198 (246)
T 1ign_A          156 NFAAYRTQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLL  198 (246)
T ss_dssp             -----CCCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHH
T ss_pred             chhhhccccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHh
Confidence                            279999999999999999999998775

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.17  E-value=1.6e-11  Score=100.50  Aligned_cols=47  Identities=23%  Similarity=0.485  Sum_probs=44.5

Q ss_pred             cccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHh
Q 046581          223 IKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT  269 (470)
Q Consensus       223 ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~l  269 (470)
                      ..+++||+|||.+|+++|.+||++|..||++|++||+.||++||..+
T Consensus        16 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           16 SAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             ccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            46789999999999999999999999999999999999999999865

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.14  E-value=5.1e-11  Score=93.19  Aligned_cols=50  Identities=18%  Similarity=0.381  Sum_probs=46.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCChHHHHh---hhCCCCCHHHHHHHHHHhHHhh
Q 046581          224 KKDSWSEEEERILVEAHARIGNRWAEIA---KHIPGRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       224 kk~~WT~EED~~Ll~lv~~~G~kWs~IA---k~LpgRT~~q~KnRw~~llrr~  273 (470)
                      ++.+||+|||+.|++.|++||.+|+.|+   +++++||..+||+||+.|.|+.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            6789999999999999999999999999   5779999999999999998753

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.11  E-value=2.5e-11  Score=106.86  Aligned_cols=82  Identities=10%  Similarity=0.074  Sum_probs=70.8

Q ss_pred             ccCCCCCCCCCchHHHHHHHHHHHcCCCCcccccChhhcccc-----cCCCcccccCccccccccccccccCC-----CC
Q 046581          101 HEALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIY-----KEGSKSACNNNKGMIGHKRSNKKGAS-----VA  170 (470)
Q Consensus       101 ~~~~~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~-----~grs~~~cR~~~q~~~~~rRw~~~l~-----p~  170 (470)
                      ....+++++||.|||+.|+++|.+||.+      +|..|+..     .+|+.++|++         ||.+.+.     |.
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G------~W~~Ia~~~~~~f~~RT~v~lKd---------RWrnllk~~~~~p~   75 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTG------RWRDVKMRAFDNADHRTYVDLKD---------KWKTLVHTASIAPQ   75 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGG------CHHHHHHHHCSCCSSCCSHHHHH---------HHHHHHHHHHTCST
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCC------CHHHHHHHhccccCCCCHHHHHH---------HHHHHHhhhccCCc
Confidence            3455777999999999999999999964      39999884     6888888884         7777666     99


Q ss_pred             CCCC-CCCHHHHHHHHHHHHHhCCchHHH
Q 046581          171 LIKG-QWTDEEDRKLIKLVKQYGVRKWAQ  198 (470)
Q Consensus       171 lkKG-~WT~EED~~Ll~lV~~yG~~~Ws~  198 (470)
                      +++| +|++||+.+|++++..+| ++|.+
T Consensus        76 ~krg~~~p~e~~~rv~~~h~~~g-n~~~~  103 (121)
T 2juh_A           76 QRRGEPVPQDLLDRVLAAHAYWS-QQQGK  103 (121)
T ss_dssp             TCCCSCCCHHHHHHHHHHHHHHH-HHHCC
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHc-cchhc
Confidence            9999 999999999999999999 78876

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.11  E-value=9.9e-11  Score=96.79  Aligned_cols=49  Identities=27%  Similarity=0.494  Sum_probs=45.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-hHHHHhhh----CCCCCHHHHHHHHHHhHHhhh
Q 046581          226 DSWSEEEERILVEAHARIGN-RWAEIAKH----IPGRTENSIKNHWNATKRRQN  274 (470)
Q Consensus       226 ~~WT~EED~~Ll~lv~~~G~-kWs~IAk~----LpgRT~~q~KnRw~~llrr~~  274 (470)
                      .+||+|||+.|+++|.+||. +|+.|++.    |++||+.+||+||+.++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            47999999999999999997 99999996    899999999999999988643

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.06  E-value=9.7e-11  Score=98.81  Aligned_cols=48  Identities=15%  Similarity=0.501  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CchHHHHHHHhcCCChhhhhhhhhhcc
Q 046581          172 IKGQWTDEEDRKLIKLVKQYG---VRKWAQISERMAGRAGKQCRERWHNHL  219 (470)
Q Consensus       172 kKG~WT~EED~~Ll~lV~~yG---~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L  219 (470)
                      .+++||+|||++|.+++..|+   ..+|.+||+.|||||++||++||..++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            467899999999999999997   468999999999999999999999865

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.06  E-value=2.1e-10  Score=96.77  Aligned_cols=50  Identities=28%  Similarity=0.569  Sum_probs=45.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHhC----ChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581          224 KKDSWSEEEERILVEAHARIG----NRWAEIAKHIPGRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       224 kk~~WT~EED~~Ll~lv~~~G----~kWs~IAk~LpgRT~~q~KnRw~~llrr~  273 (470)
                      .+++||.|||.+|++++..||    ++|.+||++|||||.++|++||+.+++..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467899999999999999996    68999999999999999999999988654

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.05  E-value=2.2e-10  Score=98.61  Aligned_cols=54  Identities=22%  Similarity=0.419  Sum_probs=48.7

Q ss_pred             cccccCCCCHHHHHHHHHHHHHhCC-hHHHHhhhC----CCCCHHHHHHHHHHhHHhhh
Q 046581          221 PDIKKDSWSEEEERILVEAHARIGN-RWAEIAKHI----PGRTENSIKNHWNATKRRQN  274 (470)
Q Consensus       221 p~ikk~~WT~EED~~Ll~lv~~~G~-kWs~IAk~L----pgRT~~q~KnRw~~llrr~~  274 (470)
                      +..++++||+|||+.|+++|.+||. +|+.|++.+    ++||+.+||+||+.++++..
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~   67 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK   67 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            4567899999999999999999996 999999965    89999999999999998643

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.05  E-value=7.3e-11  Score=104.08  Aligned_cols=77  Identities=14%  Similarity=0.085  Sum_probs=66.8

Q ss_pred             cCCCCCCCCCchHHHHHHHHHHHcCCCCcccccChhhcccc-----cCCCcccccCccccccccccccccC-----CCCC
Q 046581          102 EALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIY-----KEGSKSACNNNKGMIGHKRSNKKGA-----SVAL  171 (470)
Q Consensus       102 ~~~~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~-----~grs~~~cR~~~q~~~~~rRw~~~l-----~p~l  171 (470)
                      ...+++++||.|||+.|+++|.+||.++      |..|+..     .+|+.++|++         ||.+.+     .|.+
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~------W~~I~~~~~~~~~~RT~vdlKd---------RWrnllk~~~~~p~~   90 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGR------WRDVKFRAFENVHHRTYVDLKD---------KWKTLVHTASIAPQQ   90 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSC------HHHHHHHHHSSSCCCCHHHHHH---------HHHHHHHHHHSCTTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCC------hHHHHHHhccccCCCCHHHHHH---------HHHHHHhhccCCccc
Confidence            3456779999999999999999999754      9999873     6888899984         888877     8999


Q ss_pred             CCCCCCHHH-HHHHHHHHHHhCC
Q 046581          172 IKGQWTDEE-DRKLIKLVKQYGV  193 (470)
Q Consensus       172 kKG~WT~EE-D~~Ll~lV~~yG~  193 (470)
                      ++|.|+++| +.+|++++..+|.
T Consensus        91 kr~~~~p~e~~~~v~~~h~~~g~  113 (122)
T 2roh_A           91 RRGAPVPQELLDRVLAAQAYWSV  113 (122)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHS
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhh
Confidence            999999999 8999999999884

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.87  E-value=1.1e-09  Score=85.70  Aligned_cols=49  Identities=24%  Similarity=0.323  Sum_probs=44.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchHHHHHH---HhcCCChhhhhhhhhhccc
Q 046581          171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISE---RMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~---~lpgRT~~Qcr~Rw~~~L~  220 (470)
                      ..+.+||+|||+.|++.|++||. +|+.|+.   ++++||...+++||+++.+
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            36789999999999999999995 9999994   6679999999999998765

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=2.9e-09  Score=82.79  Aligned_cols=49  Identities=14%  Similarity=0.247  Sum_probs=45.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581          224 KKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRR  272 (470)
Q Consensus       224 kk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr  272 (470)
                      ...+||+||++++++++.+||.+|..||.+||+||..+|..+|...+|.
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk~   59 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKN   59 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTCC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcCC
Confidence            4479999999999999999999999999999999999999999877553

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.80  E-value=7e-09  Score=87.39  Aligned_cols=65  Identities=17%  Similarity=0.301  Sum_probs=58.3

Q ss_pred             hhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhC-----CCCCHHHHHHHHHHhHHhhhhcc
Q 046581          209 KQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHI-----PGRTENSIKNHWNATKRRQNSRR  277 (470)
Q Consensus       209 ~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~L-----pgRT~~q~KnRw~~llrr~~~k~  277 (470)
                      .=+.++|.++|.+    .+||.||+..|++|+++|+.+|..|+..+     ++||..+||+||..+.++....+
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4577899999876    89999999999999999999999999999     58999999999999988766544

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=7.5e-09  Score=80.44  Aligned_cols=46  Identities=15%  Similarity=0.244  Sum_probs=42.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhc
Q 046581          172 IKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNH  218 (470)
Q Consensus       172 kKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~  218 (470)
                      ..++||+||++++++++..|| .+|..||..||+||..||.++|...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            557899999999999999999 6999999999999999999999754

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.73  E-value=1.6e-08  Score=97.24  Aligned_cols=90  Identities=18%  Similarity=0.275  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHH
Q 046581          181 DRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTEN  260 (470)
Q Consensus       181 D~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~  260 (470)
                      |..|..+-.+.  .+|+++-..|..+....+. +++..-.......+||+||+.++++++.+||++|..||+.|++||..
T Consensus        92 D~ei~sLkrqI--q~~kQ~~~~L~~~~~~~Ie-~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~  168 (235)
T 2iw5_B           92 DMELVSVKRQI--QNIKQTNSALKEKLDGGIE-PYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVV  168 (235)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHHHHHSTTTTG-GGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHH
T ss_pred             hHHHHHHHHHH--HHHHHHHHHHHHHHHhhcc-cccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHH
Confidence            44455555443  3677777777555543332 34331111123469999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHhh
Q 046581          261 SIKNHWNATKRRQ  273 (470)
Q Consensus       261 q~KnRw~~llrr~  273 (470)
                      |||++|...+||.
T Consensus       169 QcKnfY~~~kKRl  181 (235)
T 2iw5_B          169 QVKNFFVNYRRRF  181 (235)
T ss_dssp             HHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999877653

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.66  E-value=2.4e-08  Score=80.40  Aligned_cols=52  Identities=15%  Similarity=0.344  Sum_probs=45.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC---CchHHHHHHHhcCCChhhhhhhhhhcccc
Q 046581          169 VALIKGQWTDEEDRKLIKLVKQYG---VRKWAQISERMAGRAGKQCRERWHNHLRP  221 (470)
Q Consensus       169 p~lkKG~WT~EED~~Ll~lV~~yG---~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p  221 (470)
                      .....+.||.|||++|.+++..|+   ..+|.+||..| |||..+|+.||..+...
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            345678899999999999999997   46899999998 99999999999876543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.66  E-value=3.1e-08  Score=79.73  Aligned_cols=50  Identities=22%  Similarity=0.462  Sum_probs=45.1

Q ss_pred             ccccCCCCHHHHHHHHHHHHHhC----ChHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581          222 DIKKDSWSEEEERILVEAHARIG----NRWAEIAKHIPGRTENSIKNHWNATKRR  272 (470)
Q Consensus       222 ~ikk~~WT~EED~~Ll~lv~~~G----~kWs~IAk~LpgRT~~q~KnRw~~llrr  272 (470)
                      ..+.+.||.||+.+|.+++.+|+    .+|..||..+ |||..+|++||+.|++.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34567999999999999999997    5899999998 99999999999998754

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.50  E-value=1.2e-07  Score=76.56  Aligned_cols=53  Identities=23%  Similarity=0.421  Sum_probs=46.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC----hHHHHhhhCCCCCHHHHHHHHHHhHHhhhhc
Q 046581          224 KKDSWSEEEERILVEAHARIGN----RWAEIAKHIPGRTENSIKNHWNATKRRQNSR  276 (470)
Q Consensus       224 kk~~WT~EED~~Ll~lv~~~G~----kWs~IAk~LpgRT~~q~KnRw~~llrr~~~k  276 (470)
                      ....||.+|+.+|.+++..|+.    +|..||..+||||..+|+.||..+++.....
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~   63 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQ   63 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccccc
Confidence            3468999999999999999984    7999999999999999999999996654433

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.41  E-value=3e-07  Score=88.45  Aligned_cols=49  Identities=24%  Similarity=0.479  Sum_probs=45.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccc
Q 046581          171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~  220 (470)
                      ...++||+||+.++++++.+|| ++|..||+.|++||..||+++|+++.+
T Consensus       131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999 799999999999999999999988754

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.40  E-value=2.1e-07  Score=72.06  Aligned_cols=48  Identities=23%  Similarity=0.511  Sum_probs=43.9

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCchHHHHHH-HhcCCChhhhhhhhhhccc
Q 046581          173 KGQWTDEEDRKLIKLVKQY--------GVRKWAQISE-RMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~y--------G~~~Ws~IA~-~lpgRT~~Qcr~Rw~~~L~  220 (470)
                      +-+||+|||+.|++.|.+|        |..-|..+++ .+|++|-.+||+||.++|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            4679999999999999999        6567999999 8999999999999999875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.39  E-value=4.9e-07  Score=73.01  Aligned_cols=49  Identities=16%  Similarity=0.451  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---chHHHHHHHhcCCChhhhhhhhhhcccc
Q 046581          173 KGQWTDEEDRKLIKLVKQYGV---RKWAQISERMAGRAGKQCRERWHNHLRP  221 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~---~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p  221 (470)
                      ...||.+|+++|.+++..|+.   .+|.+||..|||||..+|+.||..++.-
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            467999999999999999974   4799999999999999999999987653

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.39  E-value=7.9e-07  Score=94.03  Aligned_cols=48  Identities=25%  Similarity=0.479  Sum_probs=44.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581          225 KDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRR  272 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr  272 (470)
                      ...||++|-.++++++.+||.+|..||..++.||..|||++|....++
T Consensus       380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          380 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999865544

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.18  E-value=5.9e-07  Score=75.67  Aligned_cols=56  Identities=18%  Similarity=0.328  Sum_probs=49.9

Q ss_pred             ccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHh-----cCCChhhhhhhhhhcccc
Q 046581          161 RSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERM-----AGRAGKQCRERWHNHLRP  221 (470)
Q Consensus       161 rRw~~~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~l-----pgRT~~Qcr~Rw~~~L~p  221 (470)
                      .+|.++|.+    .+||.||++.|++|+++|+ -+|..|+..+     ++||..++++||..+.+.
T Consensus        22 eeY~~~L~~----~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~   82 (93)
T 3hm5_A           22 QEYQLYLHD----DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK   82 (93)
T ss_dssp             HHHHHHTCB----TTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCC----CCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence            578788865    8999999999999999999 5999999999     589999999999886653

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.02  E-value=6.9e-06  Score=63.55  Aligned_cols=46  Identities=13%  Similarity=0.340  Sum_probs=41.5

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCh-HHHHhh-hCCCCCHHHHHHHHHHhH
Q 046581          225 KDSWSEEEERILVEAHARI--------GNR-WAEIAK-HIPGRTENSIKNHWNATK  270 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~--------G~k-Ws~IAk-~LpgRT~~q~KnRw~~ll  270 (470)
                      +.+||+|||.+|++.|.++        |++ |.+++. .+|.+|-.+||+||...+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            5689999999999999999        544 999999 799999999999998755

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.96  E-value=9.3e-06  Score=67.79  Aligned_cols=48  Identities=13%  Similarity=0.348  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---hHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581          226 DSWSEEEERILVEAHARIGN---RWAEIAKHIPGRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       226 ~~WT~EED~~Ll~lv~~~G~---kWs~IAk~LpgRT~~q~KnRw~~llrr~  273 (470)
                      -.||.|||+.||...++-|.   .|+.||+.|.+|+.+||++||+.|++--
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf   84 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            46999999999999999987   7999999999999999999999998753

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.95  E-value=2.3e-05  Score=78.64  Aligned_cols=99  Identities=21%  Similarity=0.313  Sum_probs=80.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcc-----------------------------------
Q 046581          175 QWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHL-----------------------------------  219 (470)
Q Consensus       175 ~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L-----------------------------------  219 (470)
                      .||..+...++.++.+||..+|..||..|+|+|...++..+.-..                                   
T Consensus       112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~~  191 (304)
T 1ofc_X          112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALDQ  191 (304)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            399999999999999999889999999999999988854331100                                   


Q ss_pred             ---------------ccccccCCCCHHHHHHHHHHHHHhCC----hHHHHhh------------hCCCCCHHHHHHHHHH
Q 046581          220 ---------------RPDIKKDSWSEEEERILVEAHARIGN----RWAEIAK------------HIPGRTENSIKNHWNA  268 (470)
Q Consensus       220 ---------------~p~ikk~~WT~EED~~Ll~lv~~~G~----kWs~IAk------------~LpgRT~~q~KnRw~~  268 (470)
                                     -+..+...||++||..||-++.+||-    .|..|..            ++..||+.+|..|.+.
T Consensus       192 Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~t  271 (304)
T 1ofc_X          192 KMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNT  271 (304)
T ss_dssp             HHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHH
T ss_pred             HHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHH
Confidence                           01123468999999999999999994    6999963            3457999999999999


Q ss_pred             hHHhh
Q 046581          269 TKRRQ  273 (470)
Q Consensus       269 llrr~  273 (470)
                      |++-.
T Consensus       272 Li~~i  276 (304)
T 1ofc_X          272 LITLI  276 (304)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88753

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.89  E-value=1.8e-05  Score=61.76  Aligned_cols=52  Identities=17%  Similarity=0.364  Sum_probs=46.1

Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhCChHHHHhh-hCCCCCHHHHHHHHHHhHH
Q 046581          220 RPDIKKDSWSEEEERILVEAHARIGNRWAEIAK-HIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       220 ~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk-~LpgRT~~q~KnRw~~llr  271 (470)
                      .|.+....||+||-.+..+++.+||.+|..|++ .||+||..+|...|..-+|
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKk   56 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKK   56 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHHC
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcccC
Confidence            356777899999999999999999999999999 5899999999998875443

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.03  E-value=2.6e-06  Score=67.57  Aligned_cols=46  Identities=13%  Similarity=0.402  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---hHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581          226 DSWSEEEERILVEAHARIGN---RWAEIAKHIPGRTENSIKNHWNATKRR  272 (470)
Q Consensus       226 ~~WT~EED~~Ll~lv~~~G~---kWs~IAk~LpgRT~~q~KnRw~~llrr  272 (470)
                      -.||.|||+.||...++-|.   .|+.||+.| +|+++||++||..|++-
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            36999999999999999997   799999999 99999999999998763

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.76  E-value=3.4e-05  Score=60.23  Aligned_cols=49  Identities=18%  Similarity=0.407  Sum_probs=44.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHH-HhcCCChhhhhhhhhh
Q 046581          168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISE-RMAGRAGKQCRERWHN  217 (470)
Q Consensus       168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~-~lpgRT~~Qcr~Rw~~  217 (470)
                      .|.+....||+||-++..+.+.+|| .+|..|++ .|++|+..+|...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            4677788999999999999999999 69999999 5999999999988864

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.75  E-value=5.7e-05  Score=63.51  Aligned_cols=52  Identities=19%  Similarity=0.355  Sum_probs=46.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCChHHHHhhhCC-----CCCHHHHHHHHHHhHHhhhhcc
Q 046581          226 DSWSEEEERILVEAHARIGNRWAEIAKHIP-----GRTENSIKNHWNATKRRQNSRR  277 (470)
Q Consensus       226 ~~WT~EED~~Ll~lv~~~G~kWs~IAk~Lp-----gRT~~q~KnRw~~llrr~~~k~  277 (470)
                      ..||.||...|++++++|.-+|..|+..+.     .||..++|.||..+.++....+
T Consensus        31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            589999999999999999999999999874     7999999999999988765543

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.71  E-value=5.6e-06  Score=66.70  Aligned_cols=43  Identities=26%  Similarity=0.519  Sum_probs=38.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC----hHHHHhhhCCCCCHHHHHHHHH
Q 046581          225 KDSWSEEEERILVEAHARIGN----RWAEIAKHIPGRTENSIKNHWN  267 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G~----kWs~IAk~LpgRT~~q~KnRw~  267 (470)
                      ...||.+|+++|..++..|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999985    7999999999999999999985

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.68  E-value=5.4e-06  Score=66.78  Aligned_cols=44  Identities=11%  Similarity=0.365  Sum_probs=39.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc---hHHHHHHHhcCCChhhhhhhhh
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVR---KWAQISERMAGRAGKQCRERWH  216 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~---~Ws~IA~~lpgRT~~Qcr~Rw~  216 (470)
                      ...||.||+++|.+++..|+..   +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            4579999999999999999743   7999999999999999999995

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.43  E-value=0.00016  Score=60.80  Aligned_cols=48  Identities=21%  Similarity=0.288  Sum_probs=43.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581          225 KDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRR  272 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr  272 (470)
                      ...||+||.++..+++..||.+|..||..||+||..+|-..|...+|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~Kk~   90 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN   90 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccccC
Confidence            468999999999999999999999999999999999999999866543

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.41  E-value=0.00012  Score=61.06  Aligned_cols=52  Identities=17%  Similarity=0.415  Sum_probs=44.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC--chHHHHHHHhcCCChhhhhhhhhhccc
Q 046581          169 VALIKGQWTDEEDRKLIKLVKQYGV--RKWAQISERMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       169 p~lkKG~WT~EED~~Ll~lV~~yG~--~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~  220 (470)
                      ..-+---||.|||+.|+...++-|.  ..|..||+.|.+|++.|+++||+.+++
T Consensus        29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            3334456999999999999999985  369999999999999999999987543

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.38  E-value=0.00027  Score=56.30  Aligned_cols=47  Identities=23%  Similarity=0.420  Sum_probs=42.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCChHHHHhh-hCCCCCHHHHHHHHHHhHH
Q 046581          225 KDSWSEEEERILVEAHARIGNRWAEIAK-HIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G~kWs~IAk-~LpgRT~~q~KnRw~~llr  271 (470)
                      ...||+||-.+..+++.+||.+|..|++ .||+||..+|...|..-+|
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKk   55 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKT   55 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhcC
Confidence            4589999999999999999999999999 5999999999999985443

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.34  E-value=0.00016  Score=76.60  Aligned_cols=45  Identities=24%  Similarity=0.527  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhc
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNH  218 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~  218 (470)
                      ..+||+||-.++++++.+|| ++|..||+.|+.||..||+.+|.++
T Consensus       380 ~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          380 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             CSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence            57999999999999999999 6999999999999999999999764

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.24  E-value=0.00025  Score=59.56  Aligned_cols=44  Identities=11%  Similarity=0.259  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhh
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHN  217 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~  217 (470)
                      ...||+||.++..+....|| .+|..|+..||+||..+|.+.|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence            45699999999999999999 699999999999999999998854

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.21  E-value=0.00034  Score=55.71  Aligned_cols=44  Identities=14%  Similarity=0.295  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHH-HhcCCChhhhhhhhhh
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVRKWAQISE-RMAGRAGKQCRERWHN  217 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~-~lpgRT~~Qcr~Rw~~  217 (470)
                      ...||+||-.+..+.+..|| .+|..|++ .||+||..+|...|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            45699999999999999999 69999999 6999999999998863

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.27  E-value=5.5e-05  Score=60.02  Aligned_cols=45  Identities=20%  Similarity=0.505  Sum_probs=41.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCc--hHHHHHHHhcCCChhhhhhhhhhccc
Q 046581          175 QWTDEEDRKLIKLVKQYGVR--KWAQISERMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       175 ~WT~EED~~Ll~lV~~yG~~--~Ws~IA~~lpgRT~~Qcr~Rw~~~L~  220 (470)
                      .||.|||..|+..+++-|..  .|..||+.| +|++.|+.+||..++.
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            59999999999999999852  699999999 9999999999998765

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.10  E-value=0.00028  Score=57.70  Aligned_cols=49  Identities=31%  Similarity=0.678  Sum_probs=40.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---------chHHHHHHHhc----CCChhhhhhhhhhccc
Q 046581          172 IKGQWTDEEDRKLIKLVKQYGV---------RKWAQISERMA----GRAGKQCRERWHNHLR  220 (470)
Q Consensus       172 kKG~WT~EED~~Ll~lV~~yG~---------~~Ws~IA~~lp----gRT~~Qcr~Rw~~~L~  220 (470)
                      +...||.+|-.+|+++......         ..|..||..|.    .||+.||+.+|.++..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k   64 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK   64 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            4567999999999999986421         15999999985    7999999999988653

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.04  E-value=0.00057  Score=55.83  Aligned_cols=51  Identities=16%  Similarity=0.487  Sum_probs=42.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC----------hHHHHhhhCC----CCCHHHHHHHHHHhHHhhhh
Q 046581          225 KDSWSEEEERILVEAHARIGN----------RWAEIAKHIP----GRTENSIKNHWNATKRRQNS  275 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G~----------kWs~IAk~Lp----gRT~~q~KnRw~~llrr~~~  275 (470)
                      ...||.+|-.+||++......          .|..||..|.    .||+.||+.+|+.|++..++
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~   68 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK   68 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            468999999999999876332          5999999863    69999999999999887543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.02  E-value=0.0022  Score=60.12  Aligned_cols=101  Identities=15%  Similarity=0.245  Sum_probs=72.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC--CchHHHHHHH--hcCCChhhhhhhhhhcc----------------------------
Q 046581          172 IKGQWTDEEDRKLIKLVKQYG--VRKWAQISER--MAGRAGKQCRERWHNHL----------------------------  219 (470)
Q Consensus       172 kKG~WT~EED~~Ll~lV~~yG--~~~Ws~IA~~--lpgRT~~Qcr~Rw~~~L----------------------------  219 (470)
                      ....||+.|-..|++++.+||  ..+|..|+..  |.+++...++..+..++                            
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~   85 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPT   85 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCE
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchh
Confidence            445799999999999999999  5689999875  56888766554221100                            


Q ss_pred             -----------------------ccc--------------------cccCCCCHHHHHHHHHHHHHhC-ChHHHHhh--h
Q 046581          220 -----------------------RPD--------------------IKKDSWSEEEERILVEAHARIG-NRWAEIAK--H  253 (470)
Q Consensus       220 -----------------------~p~--------------------ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk--~  253 (470)
                                             +..                    .-...||.+||..||..+.+|| ++|.+|-.  .
T Consensus        86 ~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~  165 (211)
T 4b4c_A           86 FRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPD  165 (211)
T ss_dssp             EEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSS
T ss_pred             hhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChh
Confidence                                   000                    0123599999999999999999 89999954  2


Q ss_pred             C------------CCCCHHHHHHHHHHhHHh
Q 046581          254 I------------PGRTENSIKNHWNATKRR  272 (470)
Q Consensus       254 L------------pgRT~~q~KnRw~~llrr  272 (470)
                      |            ..++...|..|-..|++-
T Consensus       166 l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~  196 (211)
T 4b4c_A          166 LSLTHKILPDDPDKKPQAKQLQTRADYLIKL  196 (211)
T ss_dssp             SSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred             cCccccccccccccCCChHHHHHHHHHHHHH
Confidence            1            124566799998887764

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.74  E-value=0.0038  Score=64.18  Aligned_cols=97  Identities=23%  Similarity=0.402  Sum_probs=76.4

Q ss_pred             CCHHHHHHHHHHHHHhCCchHHHHHHHhc-CCChhhhhhhhhhcc-----------------------------------
Q 046581          176 WTDEEDRKLIKLVKQYGVRKWAQISERMA-GRAGKQCRERWHNHL-----------------------------------  219 (470)
Q Consensus       176 WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp-gRT~~Qcr~Rw~~~L-----------------------------------  219 (470)
                      ||.-+=..++.++.+||..+-..||..|. |+|...|+. |..++                                   
T Consensus       126 WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L~  204 (374)
T 2y9y_A          126 WNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEALR  204 (374)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999888999999997 899888763 31110                                   


Q ss_pred             -------cc----------c-cccCCCCHHHHHHHHHHHHHhC----ChHHHHhhh------------CCCCCHHHHHHH
Q 046581          220 -------RP----------D-IKKDSWSEEEERILVEAHARIG----NRWAEIAKH------------IPGRTENSIKNH  265 (470)
Q Consensus       220 -------~p----------~-ikk~~WT~EED~~Ll~lv~~~G----~kWs~IAk~------------LpgRT~~q~KnR  265 (470)
                             +|          . .+...||++||..||-++.+||    +.|..|-..            |..||+..|..|
T Consensus       205 ~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rR  284 (374)
T 2y9y_A          205 RKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARR  284 (374)
T ss_dssp             HHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHH
T ss_pred             HHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence                   00          0 0345799999999999999998    469999443            347999999999


Q ss_pred             HHHhHHhh
Q 046581          266 WNATKRRQ  273 (470)
Q Consensus       266 w~~llrr~  273 (470)
                      .+.|++..
T Consensus       285 c~tLi~~I  292 (374)
T 2y9y_A          285 GNTLLQCL  292 (374)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=96.49  E-value=0.0018  Score=54.35  Aligned_cols=47  Identities=21%  Similarity=0.459  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhc-----CCChhhhhhhhhhccc
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMA-----GRAGKQCRERWHNHLR  220 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp-----gRT~~Qcr~Rw~~~L~  220 (470)
                      ...||.||...|++|+++|. -+|..|+....     .||..++++||..+..
T Consensus        30 ~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~   81 (93)
T 4iej_A           30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence            36799999999999999999 59999999874     7999999999998765

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=96.39  E-value=0.0036  Score=62.85  Aligned_cols=106  Identities=11%  Similarity=0.084  Sum_probs=70.4

Q ss_pred             CCCCchHHHHHHHHHHHcCCCCcccccChhhccccc-CCCcccccCccccc-----------------------------
Q 046581          108 TTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK-EGSKSACNNNKGMI-----------------------------  157 (470)
Q Consensus       108 g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~-grs~~~cR~~~q~~-----------------------------  157 (470)
                      +.||..+...++.++.+||.++      |..||..+ |++....+.-..++                             
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~------~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~  184 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDD------IDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLS  184 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTC------HHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHH------HHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999765      99998755 33321111000000                             


Q ss_pred             ------------cccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCC---chHHHHHH------------HhcCCChhh
Q 046581          158 ------------GHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGV---RKWAQISE------------RMAGRAGKQ  210 (470)
Q Consensus       158 ------------~~~rRw~~~l~p~lkKG~WT~EED~~Ll~lV~~yG~---~~Ws~IA~------------~lpgRT~~Q  210 (470)
                                  .+...-.+...+..+...||+|||..|+-++.+||.   +.|..|..            ++..||+.+
T Consensus       185 ~~~~l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~e  264 (304)
T 1ofc_X          185 IKKALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALE  264 (304)
T ss_dssp             HHHHHHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHH
T ss_pred             HHHHHHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHH
Confidence                        000000011112336678999999999999999999   89999973            334688888


Q ss_pred             hhhhhhhcc
Q 046581          211 CRERWHNHL  219 (470)
Q Consensus       211 cr~Rw~~~L  219 (470)
                      +..|-..++
T Consensus       265 l~rRc~tLi  273 (304)
T 1ofc_X          265 LQRRCNTLI  273 (304)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888876543

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.28  E-value=0.18  Score=39.49  Aligned_cols=48  Identities=19%  Similarity=0.268  Sum_probs=40.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCch--HHHHHHHhc--CCChhhhhhhhhhc
Q 046581          171 LIKGQWTDEEDRKLIKLVKQYGVRK--WAQISERMA--GRAGKQCRERWHNH  218 (470)
Q Consensus       171 lkKG~WT~EED~~Ll~lV~~yG~~~--Ws~IA~~lp--gRT~~Qcr~Rw~~~  218 (470)
                      ..+-.||+|.-++.+++|.+.|..+  ++.|.+.|.  |.|..+|+.+.+.|
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            4566799999999999999999432  899999985  88999999888765

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.68  E-value=0.32  Score=38.09  Aligned_cols=48  Identities=15%  Similarity=0.230  Sum_probs=40.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCh---HHHHhhhC--CCCCHHHHHHHHHHhHH
Q 046581          224 KKDSWSEEEERILVEAHARIGNR---WAEIAKHI--PGRTENSIKNHWNATKR  271 (470)
Q Consensus       224 kk~~WT~EED~~Ll~lv~~~G~k---Ws~IAk~L--pgRT~~q~KnRw~~llr  271 (470)
                      .+-.||+|..+..+++|..+|..   |..|.+.|  +|.|..+|+.|...+.-
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~   58 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            45689999999999999999964   78998875  79999999999876543

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=89.36  E-value=0.77  Score=47.22  Aligned_cols=46  Identities=20%  Similarity=0.412  Sum_probs=36.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---chHHHHHHHh------------cCCChhhhhhhhhh
Q 046581          172 IKGQWTDEEDRKLIKLVKQYGV---RKWAQISERM------------AGRAGKQCRERWHN  217 (470)
Q Consensus       172 kKG~WT~EED~~Ll~lV~~yG~---~~Ws~IA~~l------------pgRT~~Qcr~Rw~~  217 (470)
                      ++..||++||..|+-++.+||.   +.|..|-..+            ..||+..+..|...
T Consensus       227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~t  287 (374)
T 2y9y_A          227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNT  287 (374)
T ss_dssp             SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHH
Confidence            4668999999999999999998   8899996653            25666666666544

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=87.96  E-value=0.61  Score=43.32  Aligned_cols=50  Identities=16%  Similarity=0.316  Sum_probs=41.7

Q ss_pred             cccCCCCHHHHHHHHHHHHHhC---ChHHHHhhh--CCCCCHHHHHHHHHHhHHh
Q 046581          223 IKKDSWSEEEERILVEAHARIG---NRWAEIAKH--IPGRTENSIKNHWNATKRR  272 (470)
Q Consensus       223 ikk~~WT~EED~~Ll~lv~~~G---~kWs~IAk~--LpgRT~~q~KnRw~~llrr  272 (470)
                      -....||+.|-..|+.++.+||   .+|..|+..  |.+||...|+..+..+..+
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            3456899999999999999999   579999864  7899999999988877655

>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5}

Probab=82.89  E-value=0.33  Score=53.49  Aligned_cols=14  Identities=0%  Similarity=0.057  Sum_probs=9.8

Q ss_pred             CCCCchHHHHHHHH
Q 046581          108 TTTTTLEPTSFVDG  121 (470)
Q Consensus       108 g~WT~EED~~Ll~~  121 (470)
                      ..|++.|=+.|+..
T Consensus       280 ~HFSP~DwQ~Lin~  293 (724)
T 3ntt_A          280 SHWSPRDWQRLINN  293 (724)
T ss_dssp             GTCCHHHHHHHHHH
T ss_pred             eccCHHHHHHHHHh
Confidence            45788777777665

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=82.74  E-value=0.84  Score=45.01  Aligned_cols=28  Identities=46%  Similarity=0.858  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHHHH
Q 046581          174 GQWTDEEDRKLIKLVKQYGVRKWAQISE  201 (470)
Q Consensus       174 G~WT~EED~~Ll~lV~~yG~~~Ws~IA~  201 (470)
                      ..|+.+||..|+..|.+||.++|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4699999999999999999999999964

>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A

Probab=82.48  E-value=0.37  Score=53.14  Aligned_cols=14  Identities=0%  Similarity=0.040  Sum_probs=9.6

Q ss_pred             CCCCchHHHHHHHH
Q 046581          108 TTTTTLEPTSFVDG  121 (470)
Q Consensus       108 g~WT~EED~~Ll~~  121 (470)
                      ..|++.|=+.|+..
T Consensus       290 ~hFSP~DwQ~Lin~  303 (736)
T 3ng9_A          290 CHFSPRDWQRLINN  303 (736)
T ss_dssp             GTCCHHHHHHHHHH
T ss_pred             eccCHHHHHHHHHh
Confidence            45788777777665

>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A

Probab=80.27  E-value=0.39  Score=51.00  Aligned_cols=12  Identities=8%  Similarity=-0.133  Sum_probs=6.2

Q ss_pred             CCchHHHHHHHH
Q 046581          110 TTTLEPTSFVDG  121 (470)
Q Consensus       110 WT~EED~~Ll~~  121 (470)
                      |++.|=+.|+..
T Consensus       121 FSP~DWQ~Linn  132 (584)
T 4dpv_Z          121 FNPGDWQLIVNT  132 (584)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHh
Confidence            556555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	470
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-22
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	4e-09
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-22
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-11
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-21
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-10
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	7e-17
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-13
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	3e-16
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	1e-15
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-15
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	3e-15
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	6e-14
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	9e-15
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	4e-12
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-14
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	7e-08
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	4e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-06
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	4e-13
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	9e-13
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	7e-07
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	4e-12
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	9e-11
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	3e-10
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	5e-10
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	1e-06
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	0.002

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.9 bits (220), Expect = 2e-22
 Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 173 KGQWTDEEDRKLIKLVKQYGVRK-----WAQISERMAGRAGKQCRERWHNHLRPDIKKDS 227
           K  +TDEED  ++ +V++   R+     + +IS  +    G   R R+  +L   ++   
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 228 WSEEEERILVEAHARIGN 245
             ++  +++ +    +  
Sbjct: 61  EVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (122), Expect = 4e-09
 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 12/87 (13%)

Query: 225 KDSWSEEEERILVEAHARIGNR------WAEIAKHIPGRTENSIKNHWNATKRRQNSRRK 278
           K S+++EE+  +++   +   R      + EI+ ++P  T NSI++ +           K
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFR------VYLSK 54

Query: 279 NKQNEKQKGNKNKPQSSVLQDYIRSKN 305
             +   +     K       + I++K 
Sbjct: 55  RLEYVYEVDKFGKLVRDDDGNLIKTKV 81

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.5 bits (217), Expect = 2e-22
 Identities = 33/52 (63%), Positives = 44/52 (84%)

Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222
           LIKG WT EED++LIKLV++YG ++W+ I++ + GR GKQCRERWHNHL P+
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (138), Expect = 2e-11
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 223 IKKDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWN 267
           + K  W++EE++ L++   + G  RW+ IAKH+ GR     +  W+
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.4 bits (209), Expect = 3e-21
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222
           K +WT EED KL KLV+Q G   W  I+  +  R   QC+ RW   L P+
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.8 bits (132), Expect = 1e-10
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 225 KDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWN 267
           K  W+ EE+  L +   + G + W  IA ++P RT+   ++ W 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 44

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (178), Expect = 7e-17
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEE 232
             +WT EE     + + ++  R+W +IS+ +  R   Q +     + +  +K     E  
Sbjct: 2   SVKWTIEEKELFEQGLAKF-GRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 60

Query: 233 ER 234
            +
Sbjct: 61  NQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 1e-13
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 228 WSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEKQK 286
           W+ EE+ +  +  A+ G RW +I+K I  RT   +K++     + +     +K+   QK
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQK 63

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 71.2 bits (174), Expect = 3e-16
 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 10/81 (12%)

Query: 176 WTDEEDRKLIKLVKQYGVRKWAQISERMA----GRAGKQCRERWHNHLR-----PDIKKD 226
           ++  E   L++ V+  G  +W  +  R       R     +++W   +      P  ++ 
Sbjct: 3   FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 227 SWSEEEERILV-EAHARIGNR 246
               ++    V  AHA    +
Sbjct: 63  EPVPQDLLDRVLAAHAYWSQQ 83

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.3 bits (167), Expect = 1e-15
 Identities = 33/47 (70%), Positives = 42/47 (89%)

Query: 225 KDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKR 271
           K SW+EEE+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T R
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.2 bits (164), Expect = 4e-15
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR 220
           K  WT+EEDR + +  K+    +WA+I++ + GR     +  W++ +R
Sbjct: 1   KTSWTEEEDRIIYQAHKRL-GNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (166), Expect = 3e-15
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 224 KKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNE 283
               W+ EE+ + V+A  + G  +  I+  I  ++   +KN +   +RR N     ++ E
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWE 63

Query: 284 K 284
            
Sbjct: 64  A 64

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (157), Expect = 6e-14
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 172 IKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR---PDIKKDSW 228
              +WT EE    ++ +++YG R +  IS+ +  ++  Q +  + N+ R    D     W
Sbjct: 4   CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEW 62

Query: 229 SEE 231
             E
Sbjct: 63  EAE 65

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (163), Expect = 9e-15
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 224 KKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQN 274
             + WSE+E+    E   +    +  IA  +  +T      ++  TK+ +N
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNEN 66

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 4e-12
 Identities = 5/45 (11%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 176 WTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR 220
           W+++E     +   Q+  + +  I+  +  +   +C   ++   +
Sbjct: 20  WSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLTKK 63

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (160), Expect = 1e-14
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISER--MAGRAGKQCRERWHNHLR 220
           +  W  EED+ L   V++YG   W++I        R     ++RW    +
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 7e-08
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 224 KKDSWSEEEERILVEAHARIGN-RWAEIAKHIP--GRTENSIKNHWNATKR 271
           K+ +W  EE++ L     + G   W++I  H     RT   +K+ W   K+
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (157), Expect = 4e-14
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISER--MAGRAGKQCRERWHNHLRPDI 223
           K +WT EE   +   V++YG   WA IS+      R     ++RW    R  +
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 224 KKDSWSEEEERILVEAHARIG-NRWAEIAKHIP--GRTENSIKNHWNATKRR 272
           KK  W+ EE   +     + G   WA I+K+ P   RT   IK+ W   KR 
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 52

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 61.9 bits (150), Expect = 4e-13
 Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 176 WTDEEDRKLIKLVKQYG---VRKWAQISERMAGRAGKQCRERWHNHLRPDIKK 225
           W+ +E++   + +  Y      +WA ++  + GR  ++ ++ +   L  DIK 
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 53.8 bits (129), Expect = 3e-10
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 227 SWSEEEERILVEAHARIG----NRWAEIAKHIPGRTENSIKNHWNATKR 271
            WS +E +    A A       +RWA +A+ + GRT   +K H+     
Sbjct: 3   PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE 51

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 9e-13
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 176 WTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNH 218
           WT +E+  L++ V   G   W  ++ +M  +  ++C + +  +
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY 46

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (103), Expect = 7e-07
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 227 SWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWN 267
           SW+ +EE  L+EA    G   W ++A  +  +T+   + H+ 
Sbjct: 3   SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 4e-12
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 173 KGQWTDEEDRKLIKLVKQYG---VRKWAQISERMAGRAGKQCRERWH 216
           +  WT  + + L   ++QY       W +I+  +  ++ + C  R+ 
Sbjct: 12  EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 58

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 9e-11
 Identities = 8/51 (15%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 220 RPDIKKDSWSEEEERILVEAHARIG----NRWAEIAKHIPGRTENSIKNHW 266
           R    ++ W++ ++++L  A  +      + W +IA+ +P +++      +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.5 bits (131), Expect = 3e-10
 Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 162 SNKKGASVALIKGQWTDEEDRKLIKLVKQYGVR--KWAQISERMAGRAGKQCRERWHNHL 219
           +N K +S       WT E DR ++ + ++ G +   ++ IS+++  +   +   R+   +
Sbjct: 22  NNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81

Query: 220 R 220
           +
Sbjct: 82  Q 82

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.1 bits (130), Expect = 5e-10
 Identities = 7/73 (9%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 206 RAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNR---WAEIAKHIPGRTENSI 262
            +                K   W+ E +R+++      G +   ++ I++ +  +T   +
Sbjct: 14  ASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEV 73

Query: 263 KNHWNATKRRQNS 275
            + +    +  ++
Sbjct: 74  SHRFRELMQLFHT 86

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 226 DSWSEEEERILVEAHARIGNRWAEIAKH-IPGRTENSIKNHWNATKRRQNSRRKNK 280
           + WS  E  +  EA  + G  + +I +  +P ++  SI  ++   K      ++ +
Sbjct: 2   EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRYVQQKR 57

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 8/44 (18%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 174 GQWTDEEDRKLIKLVKQYG---VRKWAQISERMAGRAGKQCRER 214
            +WT+E+  +L + + ++      +W +I+  + GR+      +
Sbjct: 2   PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTK 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	470
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.7
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.7
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.65
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.58
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.56
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.53
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.51
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.48
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.44
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.42
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.38
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.35
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.34
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.33
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.32
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.3
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.3
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.22
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.22
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.2
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.17
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.16
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.03
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.01
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.97
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.96
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.93
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.89
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.06
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.0
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.93
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.8
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.85
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.56
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.35
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.26
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.07
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	95.19
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.13
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.29
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	90.04
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	83.74
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	81.8

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.6e-19  Score=148.49  Aligned_cols=69  Identities=20%  Similarity=0.345  Sum_probs=64.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc-----hHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHH
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVR-----KWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHA  241 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~-----~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~  241 (470)
                      |++||+|||++|+++|.+||..     +|.+||+.|||||++||++||+++|+|.++++.||++||.+|+.++.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~   74 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   74 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhh
Confidence            6899999999999999999954     39999999999999999999999999999999999999999887653

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=4.2e-18  Score=127.42  Aligned_cols=52  Identities=63%  Similarity=1.317  Sum_probs=50.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccc
Q 046581          171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD  222 (470)
Q Consensus       171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~  222 (470)
                      ++||+||+|||++|+++|.+||.++|..||+.||+||+.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999999999999999999999985

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=4e-17  Score=120.94  Aligned_cols=50  Identities=44%  Similarity=0.870  Sum_probs=48.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccc
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD  222 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~  222 (470)
                      |++||+|||++|+++|.+||.++|..||+.|||||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            67899999999999999999889999999999999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=7.9e-16  Score=112.67  Aligned_cols=47  Identities=70%  Similarity=1.267  Sum_probs=44.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581          225 KDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llr  271 (470)
                      +.+||+|||++|+++|.++|++|+.||++|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998874

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.56  E-value=1.8e-15  Score=123.08  Aligned_cols=72  Identities=15%  Similarity=0.426  Sum_probs=61.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCchHHHHHHH----hcCCChhhhhhhhhhccc-----cccccCCCCHHHHHHHHHHHHHhCC
Q 046581          175 QWTDEEDRKLIKLVKQYGVRKWAQISER----MAGRAGKQCRERWHNHLR-----PDIKKDSWSEEEERILVEAHARIGN  245 (470)
Q Consensus       175 ~WT~EED~~Ll~lV~~yG~~~Ws~IA~~----lpgRT~~Qcr~Rw~~~L~-----p~ikk~~WT~EED~~Ll~lv~~~G~  245 (470)
                      +||+|||++|+++|.+||.++|..|++.    +++||+.||++||+++|+     +..+++.|+++|   |+..|.+.+.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~~   78 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAHA   78 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHHH
Confidence            7999999999999999998899999986    479999999999999984     567888999876   5555566667


Q ss_pred             hHHH
Q 046581          246 RWAE  249 (470)
Q Consensus       246 kWs~  249 (470)
                      +|++
T Consensus        79 ~wsq   82 (83)
T d2ckxa1          79 YWSQ   82 (83)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8875

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=2.3e-15  Score=110.18  Aligned_cols=47  Identities=34%  Similarity=0.820  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccc
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~  220 (470)
                      |++||+|||++|+++|++|| .+|+.||+.|||||+.||++||+.+|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G-~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHh-hHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999 589999999999999999999998864

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.5e-15  Score=111.32  Aligned_cols=53  Identities=30%  Similarity=0.564  Sum_probs=48.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHHHHH--hcCCChhhhhhhhhhccccccc
Q 046581          172 IKGQWTDEEDRKLIKLVKQYGVRKWAQISER--MAGRAGKQCRERWHNHLRPDIK  224 (470)
Q Consensus       172 kKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~--lpgRT~~Qcr~Rw~~~L~p~ik  224 (470)
                      ++.+||+|||++|+++|.+||.++|+.||+.  |++||+.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999998899999998  4599999999999999988764

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.5e-14  Score=107.75  Aligned_cols=49  Identities=31%  Similarity=0.731  Sum_probs=45.9

Q ss_pred             cccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581          223 IKKDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       223 ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~llr  271 (470)
                      +++++||+|||++|+++|.+|| ++|..||+.||+||+.||++||+..++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~   50 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            4689999999999999999999 589999999999999999999998765

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.3e-14  Score=105.88  Aligned_cols=49  Identities=27%  Similarity=0.560  Sum_probs=44.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhc--CCChhhhhhhhhhccc
Q 046581          172 IKGQWTDEEDRKLIKLVKQYGVRKWAQISERMA--GRAGKQCRERWHNHLR  220 (470)
Q Consensus       172 kKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp--gRT~~Qcr~Rw~~~L~  220 (470)
                      ++++||+|||++|+++|.+||.++|+.|++.++  +||+.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999889999999865  9999999999998653

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.2e-14  Score=102.75  Aligned_cols=44  Identities=20%  Similarity=0.634  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhc
Q 046581          175 QWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNH  218 (470)
Q Consensus       175 ~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~  218 (470)
                      .||+|||.+|+++|.+||.++|..||+.|++||+.||++||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            49999999999999999988999999999999999999999876

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=2.8e-13  Score=99.93  Aligned_cols=47  Identities=28%  Similarity=0.606  Sum_probs=44.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581          225 KDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~llr  271 (470)
                      ++.||+|||++|+++|.+|| ++|..||++|||||+.||++||+..+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   48 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            46899999999999999999 589999999999999999999998774

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.7e-13  Score=103.79  Aligned_cols=53  Identities=25%  Similarity=0.385  Sum_probs=48.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhhhhccc
Q 046581          226 DSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRK  278 (470)
Q Consensus       226 ~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~~~k~k  278 (470)
                      ..||+|||.+|++++..||.+|..||++||+||+.||++||+.++++..+...
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~   55 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL   55 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCT
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            57999999999999999999999999999999999999999998887655444

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.9e-13  Score=105.49  Aligned_cols=57  Identities=23%  Similarity=0.376  Sum_probs=51.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCH
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE  230 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~  230 (470)
                      ..+||+|||.+|+++|..|| .+|..||+.||+||+.||++||.+++++..+.+.+..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~   58 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKE   58 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            35799999999999999999 6999999999999999999999999988777766554

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=4.4e-13  Score=109.59  Aligned_cols=60  Identities=20%  Similarity=0.349  Sum_probs=53.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCh------HHHHhhhCCCCCHHHHHHHHHHhHHhhhhccccchhhh
Q 046581          225 KDSWSEEEERILVEAHARIGNR------WAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEK  284 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G~k------Ws~IAk~LpgRT~~q~KnRw~~llrr~~~k~k~~~~e~  284 (470)
                      ++.||+|||++|+++|.++|.+      |.+||++|||||+.|||+||+..+.+...+..+..+++
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed   66 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFG   66 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTS
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchh
Confidence            5789999999999999999974      99999999999999999999999999887776665544

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1e-12  Score=97.72  Aligned_cols=48  Identities=29%  Similarity=0.630  Sum_probs=43.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC-hHHHHhhhCC--CCCHHHHHHHHHHhHH
Q 046581          224 KKDSWSEEEERILVEAHARIGN-RWAEIAKHIP--GRTENSIKNHWNATKR  271 (470)
Q Consensus       224 kk~~WT~EED~~Ll~lv~~~G~-kWs~IAk~Lp--gRT~~q~KnRw~~llr  271 (470)
                      ++++||+|||+.|+++|.+||. +|+.||+.++  +||+.||++||+.++|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            4689999999999999999995 8999999854  9999999999998864

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.3e-13  Score=100.64  Aligned_cols=51  Identities=18%  Similarity=0.420  Sum_probs=46.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCc---hHHHHHHHhcCCChhhhhhhhhh
Q 046581          167 ASVALIKGQWTDEEDRKLIKLVKQYGVR---KWAQISERMAGRAGKQCRERWHN  217 (470)
Q Consensus       167 l~p~lkKG~WT~EED~~Ll~lV~~yG~~---~Ws~IA~~lpgRT~~Qcr~Rw~~  217 (470)
                      ..+...+++||+|||++|+++|..||..   +|.+||..|||||+.||++||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3566788999999999999999999964   69999999999999999999975

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.7e-12  Score=97.40  Aligned_cols=50  Identities=34%  Similarity=0.623  Sum_probs=45.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHhC-ChHHHHhhh--CCCCCHHHHHHHHHHhHHhh
Q 046581          224 KKDSWSEEEERILVEAHARIG-NRWAEIAKH--IPGRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       224 kk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~--LpgRT~~q~KnRw~~llrr~  273 (470)
                      ++.+||+|||++|+++|.+|| ++|+.||+.  |++||+.||++||+.+++..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            467999999999999999999 589999997  56999999999999988754

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=7.6e-12  Score=95.22  Aligned_cols=50  Identities=16%  Similarity=0.476  Sum_probs=45.4

Q ss_pred             ccccccCCCCHHHHHHHHHHHHHhCC----hHHHHhhhCCCCCHHHHHHHHHHh
Q 046581          220 RPDIKKDSWSEEEERILVEAHARIGN----RWAEIAKHIPGRTENSIKNHWNAT  269 (470)
Q Consensus       220 ~p~ikk~~WT~EED~~Ll~lv~~~G~----kWs~IAk~LpgRT~~q~KnRw~~l  269 (470)
                      .+...+.+||+|||.+|+++|.+||.    +|..||..|||||..||++||+.|
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            34567789999999999999999985    699999999999999999999865

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.22  E-value=2e-12  Score=99.43  Aligned_cols=45  Identities=16%  Similarity=0.543  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCc---hHHHHHHHhcCCChhhhhhhhhhc
Q 046581          174 GQWTDEEDRKLIKLVKQYGVR---KWAQISERMAGRAGKQCRERWHNH  218 (470)
Q Consensus       174 G~WT~EED~~Ll~lV~~yG~~---~Ws~IA~~lpgRT~~Qcr~Rw~~~  218 (470)
                      .+||+|||.+|+++|..||.+   +|.+||..|||||+.||++||..+
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L   49 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL   49 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            479999999999999999964   599999999999999999999653

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=7.2e-12  Score=91.17  Aligned_cols=43  Identities=28%  Similarity=0.588  Sum_probs=40.5

Q ss_pred             CCCHHHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHh
Q 046581          227 SWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNAT  269 (470)
Q Consensus       227 ~WT~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~l  269 (470)
                      .||+|||.+|+++|.+|| ++|..||++|++||+.||+.||...
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999864

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=1.2e-11  Score=102.18  Aligned_cols=73  Identities=10%  Similarity=0.200  Sum_probs=64.9

Q ss_pred             HhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCCh---HHHHhhhCCCCCHHHHHHHHHHhHHhhh
Q 046581          202 RMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNR---WAEIAKHIPGRTENSIKNHWNATKRRQN  274 (470)
Q Consensus       202 ~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~k---Ws~IAk~LpgRT~~q~KnRw~~llrr~~  274 (470)
                      .+|..+..++..++.+..++......||.|||++||+.++++|.+   |..||+.|+|||+++|++||+.|++...
T Consensus        10 ~~p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~   85 (95)
T d1ug2a_          10 ALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            356677777888888888888888899999999999999999987   9999999999999999999999998754

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.16  E-value=2.3e-11  Score=93.39  Aligned_cols=47  Identities=30%  Similarity=0.615  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----hHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581          226 DSWSEEEERILVEAHARIGN----RWAEIAKHIPGRTENSIKNHWNATKRR  272 (470)
Q Consensus       226 ~~WT~EED~~Ll~lv~~~G~----kWs~IAk~LpgRT~~q~KnRw~~llrr  272 (470)
                      .+||+|||.+|++++.+||.    +|.+||.+|||||..||++||+.|++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999995    599999999999999999999988654

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.03  E-value=1.6e-10  Score=93.32  Aligned_cols=49  Identities=27%  Similarity=0.484  Sum_probs=44.4

Q ss_pred             CCCHHHHHHHHHHHHHhCC-hHHHHhhh----CCCCCHHHHHHHHHHhHHhhhh
Q 046581          227 SWSEEEERILVEAHARIGN-RWAEIAKH----IPGRTENSIKNHWNATKRRQNS  275 (470)
Q Consensus       227 ~WT~EED~~Ll~lv~~~G~-kWs~IAk~----LpgRT~~q~KnRw~~llrr~~~  275 (470)
                      +||.|||++|+++|.+||. +|+.|++.    +++||+.||++||+.+++....
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~   55 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI   55 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhcc
Confidence            7999999999999999995 89999985    6899999999999999976543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.2e-10  Score=89.73  Aligned_cols=48  Identities=25%  Similarity=0.479  Sum_probs=44.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581          225 KDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRR  272 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr  272 (470)
                      ...||++|+.+|++++..||.+|..||.+|||||..+|+++|..++++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            357999999999999999999999999999999999999999987654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.1e-10  Score=90.81  Aligned_cols=48  Identities=21%  Similarity=0.275  Sum_probs=44.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581          224 KKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       224 kk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llr  271 (470)
                      ...+||+||+.+|++++.+||.+|..||.+||+||..||+++|...++
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~kk   63 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK   63 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHHC
Confidence            446899999999999999999999999999999999999999986544

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.8e-10  Score=87.57  Aligned_cols=47  Identities=26%  Similarity=0.522  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccc
Q 046581          173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~  220 (470)
                      ..+||+|||.+|++++..|| .+|..||..|||||..||++||.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            35699999999999999999 689999999999999999999988653

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=5.3e-10  Score=92.25  Aligned_cols=60  Identities=20%  Similarity=0.402  Sum_probs=52.6

Q ss_pred             ccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCch--HHHHHHHhcCCChhhhhhhhhhccc
Q 046581          161 RSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRK--WAQISERMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       161 rRw~~~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~--Ws~IA~~lpgRT~~Qcr~Rw~~~L~  220 (470)
                      .++.+......+...||.|||++|++.++++|...  |..||+.|+||++.||++||..+++
T Consensus        21 A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~   82 (95)
T d1ug2a_          21 ANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             cccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            36666777888889999999999999999999532  9999999999999999999987654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3e-10  Score=88.15  Aligned_cols=46  Identities=11%  Similarity=0.268  Sum_probs=42.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhc
Q 046581          172 IKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNH  218 (470)
Q Consensus       172 kKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~  218 (470)
                      ...+||+|||.+|++++..|| .+|..||..||+||..||+++|...
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            446799999999999999999 6999999999999999999999764

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=3e-06  Score=63.27  Aligned_cols=46  Identities=24%  Similarity=0.442  Sum_probs=41.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCChHHHHhhh-CCCCCHHHHHHHHHHhHH
Q 046581          226 DSWSEEEERILVEAHARIGNRWAEIAKH-IPGRTENSIKNHWNATKR  271 (470)
Q Consensus       226 ~~WT~EED~~Ll~lv~~~G~kWs~IAk~-LpgRT~~q~KnRw~~llr  271 (470)
                      ..||+||..++.+++..||.+|..|++. +|+||..+|.+.|...++
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~Kk   48 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKT   48 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999999999985 699999999999986544

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=3.8e-06  Score=63.34  Aligned_cols=45  Identities=24%  Similarity=0.535  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHHhC----ChHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581          226 DSWSEEEERILVEAHARIG----NRWAEIAKHIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       226 ~~WT~EED~~Ll~lv~~~G----~kWs~IAk~LpgRT~~q~KnRw~~llr  271 (470)
                      ..||.+|+.+|.+++.+|.    .+|..||..+ |||..+|..||+.|..
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e   50 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   50 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence            4799999999999999997    4799999999 9999999999998753

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=5.2e-06  Score=62.56  Aligned_cols=45  Identities=18%  Similarity=0.453  Sum_probs=40.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---chHHHHHHHhcCCChhhhhhhhhhcc
Q 046581          174 GQWTDEEDRKLIKLVKQYGV---RKWAQISERMAGRAGKQCRERWHNHL  219 (470)
Q Consensus       174 G~WT~EED~~Ll~lV~~yG~---~~Ws~IA~~lpgRT~~Qcr~Rw~~~L  219 (470)
                      +.||+||+.+|.+++.+|..   .+|.+||..| |||..+|..||..+-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            46999999999999999963   4799999999 999999999997643

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=9.7e-06  Score=60.38  Aligned_cols=42  Identities=14%  Similarity=0.350  Sum_probs=38.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCchHHHHHHH-hcCCChhhhhhhhhh
Q 046581          175 QWTDEEDRKLIKLVKQYGVRKWAQISER-MAGRAGKQCRERWHN  217 (470)
Q Consensus       175 ~WT~EED~~Ll~lV~~yG~~~Ws~IA~~-lpgRT~~Qcr~Rw~~  217 (470)
                      .||+||-.++.+++..|| .+|..|++. +|+||..||.+.|..
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            599999999999999999 699999985 699999999999864

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00052  Score=51.30  Aligned_cols=48  Identities=21%  Similarity=0.469  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------CchHHHHHH-HhcCCChhhhhhhhhhccc
Q 046581          173 KGQWTDEEDRKLIKLVKQYG--------VRKWAQISE-RMAGRAGKQCRERWHNHLR  220 (470)
Q Consensus       173 KG~WT~EED~~Ll~lV~~yG--------~~~Ws~IA~-~lpgRT~~Qcr~Rw~~~L~  220 (470)
                      +-+||.|||+.|++.|..+.        ..-|..+++ .++.+|-.+-|+||.++|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            45799999999999999983        224999996 5799999999999998875

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.56  E-value=0.0031  Score=44.27  Aligned_cols=45  Identities=20%  Similarity=0.420  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCChHHHHhhhC---CCCCHHHHHHHHHHhH
Q 046581          226 DSWSEEEERILVEAHARIGNRWAEIAKHI---PGRTENSIKNHWNATK  270 (470)
Q Consensus       226 ~~WT~EED~~Ll~lv~~~G~kWs~IAk~L---pgRT~~q~KnRw~~ll  270 (470)
                      ..||+||-.-|+..|+.+|+.|..|-=.+   |||+..++-.+|..++
T Consensus         2 knft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            47999999999999999999999995443   7999999999998763

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.35  E-value=0.0025  Score=48.21  Aligned_cols=47  Identities=19%  Similarity=0.299  Sum_probs=39.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchH--HHHHHHh--cCCChhhhhhhhhhc
Q 046581          172 IKGQWTDEEDRKLIKLVKQYGVRKW--AQISERM--AGRAGKQCRERWHNH  218 (470)
Q Consensus       172 kKG~WT~EED~~Ll~lV~~yG~~~W--s~IA~~l--pgRT~~Qcr~Rw~~~  218 (470)
                      .+-.||+||-++.++++..+|...|  +.|.+.|  +++|..||+.+.+.|
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3457999999999999999995444  6788876  689999999888765

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0031  Score=46.96  Aligned_cols=47  Identities=13%  Similarity=0.323  Sum_probs=39.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhC--------Ch-HHHHhh-hCCCCCHHHHHHHHHHhHH
Q 046581          225 KDSWSEEEERILVEAHARIG--------NR-WAEIAK-HIPGRTENSIKNHWNATKR  271 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G--------~k-Ws~IAk-~LpgRT~~q~KnRw~~llr  271 (470)
                      +.+||.|||++|++.|.++.        +. |.++++ .+|.+|-.+.|+||...+|
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            46899999999999998863        22 999996 5799999999999987653

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.07  E-value=0.0065  Score=45.84  Aligned_cols=46  Identities=15%  Similarity=0.287  Sum_probs=39.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCChH---HHHhhh--CCCCCHHHHHHHHHHhH
Q 046581          225 KDSWSEEEERILVEAHARIGNRW---AEIAKH--IPGRTENSIKNHWNATK  270 (470)
Q Consensus       225 k~~WT~EED~~Ll~lv~~~G~kW---s~IAk~--LpgRT~~q~KnRw~~ll  270 (470)
                      +-.||+||.+..++++..+|..|   ..|...  ++++|..+|+.|...+.
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999887   466665  58999999999887653

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.19  E-value=0.015  Score=40.77  Aligned_cols=44  Identities=27%  Similarity=0.435  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchHHHHHHHhc---CCChhhhhhhhhhc
Q 046581          174 GQWTDEEDRKLIKLVKQYGVRKWAQISERMA---GRAGKQCRERWHNH  218 (470)
Q Consensus       174 G~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp---gRT~~Qcr~Rw~~~  218 (470)
                      ..||+||-.-|...|+++| +.|..|-=.+|   ||+....-.+|+.+
T Consensus         2 knft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            4599999999999999999 79999988775   99999888887653

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.032  Score=42.49  Aligned_cols=50  Identities=16%  Similarity=0.412  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---chHHHHHHHhcCCChhhhhhhhhhcccc
Q 046581          172 IKGQWTDEEDRKLIKLVKQYGV---RKWAQISERMAGRAGKQCRERWHNHLRP  221 (470)
Q Consensus       172 kKG~WT~EED~~Ll~lV~~yG~---~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p  221 (470)
                      ..+.|+++|-++|-.++.....   +-|..||..++.|++..|...|...+.-
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            4568999999999999998754   3699999999999999999999876643

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.036  Score=42.14  Aligned_cols=50  Identities=22%  Similarity=0.444  Sum_probs=43.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCh----HHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581          224 KKDSWSEEEERILVEAHARIGNR----WAEIAKHIPGRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       224 kk~~WT~EED~~Ll~lv~~~G~k----Ws~IAk~LpgRT~~q~KnRw~~llrr~  273 (470)
                      ..+.|+++|-.+|-.++..+...    |+.||..+..||+..|..+|..-.+-+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccc
Confidence            34689999999999999988743    999999999999999999998765433

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.04  E-value=0.21  Score=42.07  Aligned_cols=67  Identities=21%  Similarity=0.309  Sum_probs=50.0

Q ss_pred             hhhhhhhhhhccc--cccccCCCCHHHHHHHHHHHHHhC-Ch---HHHHhhh------------CCCCCHHHHHHHHHHh
Q 046581          208 GKQCRERWHNHLR--PDIKKDSWSEEEERILVEAHARIG-NR---WAEIAKH------------IPGRTENSIKNHWNAT  269 (470)
Q Consensus       208 ~~Qcr~Rw~~~L~--p~ikk~~WT~EED~~Ll~lv~~~G-~k---Ws~IAk~------------LpgRT~~q~KnRw~~l  269 (470)
                      -.+|+.-|..+--  +..++..+|+|||.-|+-.+.++| .+   |..|-..            |..||+..|..|-+.|
T Consensus        30 i~~y~~P~~eL~i~y~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tL  109 (128)
T d1ofcx2          30 MSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL  109 (128)
T ss_dssp             HHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred             HHHhcChHHHhhhhccccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHH
Confidence            3466666655321  344556799999999999999999 44   9888432            2489999999999999


Q ss_pred             HHhhh
Q 046581          270 KRRQN  274 (470)
Q Consensus       270 lrr~~  274 (470)
                      ++.-.
T Consensus       110 i~~i~  114 (128)
T d1ofcx2         110 ITLIE  114 (128)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87643

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.74  E-value=1.7  Score=30.91  Aligned_cols=47  Identities=19%  Similarity=0.362  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHHHHHHHhCC-hHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581          227 SWSEEEERILVEAHARIGN-RWAEIAKHIPGRTENSIKNHWNATKRRQ  273 (470)
Q Consensus       227 ~WT~EED~~Ll~lv~~~G~-kWs~IAk~LpgRT~~q~KnRw~~llrr~  273 (470)
                      .|+.-|=..++.+..+||. +-..||..|.|+|..+|+...+..-+|.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~ry   48 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC   48 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            4899999999999999994 7999999999999999998877766553

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.80  E-value=0.98  Score=37.80  Aligned_cols=50  Identities=18%  Similarity=0.351  Sum_probs=38.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCch---HHHHHHHh------------cCCChhhhhhhhhhcc
Q 046581          170 ALIKGQWTDEEDRKLIKLVKQYGVRK---WAQISERM------------AGRAGKQCRERWHNHL  219 (470)
Q Consensus       170 ~lkKG~WT~EED~~Ll~lV~~yG~~~---Ws~IA~~l------------pgRT~~Qcr~Rw~~~L  219 (470)
                      ..++..+|.|||.-|+-++.+||-.+   |..|-..+            ..||+..+..|-..+|
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi  110 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI  110 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHH
Confidence            44555699999999999999999887   88886543            2678877777776544