Citrus Sinensis ID: 046589
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYN8 | 1192 | Leucine-rich repeat recep | yes | no | 0.672 | 0.411 | 0.396 | 4e-92 | |
| Q9LP24 | 1120 | Probable leucine-rich rep | no | no | 0.651 | 0.424 | 0.341 | 2e-61 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.679 | 0.433 | 0.332 | 6e-61 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.663 | 0.439 | 0.347 | 8e-61 | |
| P93194 | 1109 | Receptor-like protein kin | N/A | no | 0.613 | 0.403 | 0.346 | 9e-61 | |
| C0LGF5 | 1072 | Probable LRR receptor-lik | no | no | 0.644 | 0.438 | 0.374 | 2e-58 | |
| C0LGR3 | 1091 | Probable LRR receptor-lik | no | no | 0.631 | 0.421 | 0.323 | 5e-58 | |
| C0LGV1 | 1135 | LRR receptor-like serine/ | no | no | 0.599 | 0.385 | 0.343 | 7e-58 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.658 | 0.435 | 0.341 | 1e-57 | |
| Q9M2Z1 | 1002 | Leucine-rich repeat recep | no | no | 0.636 | 0.463 | 0.333 | 3e-57 |
| >sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1 | Back alignment and function desciption |
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Score = 339 bits (870), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 240/605 (39%), Positives = 316/605 (52%), Gaps = 115/605 (19%)
Query: 103 LLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGE 162
LL RV L + SL+G + + L LR L L+ N G+ P++ NLK L+ L L
Sbjct: 63 LLGRVNSLSLPSLSLRGQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSG 122
Query: 163 NQLSGSLPSQLGVLTWLETLSLCSNSFTGEM-PSELGDMKQLKSLDFSGNGFNGTVPIRL 221
N L+G LP L L L L L N F+G + PS + L SLD S N +G +P +
Sbjct: 123 NSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEI 182
Query: 222 GELTRLQDLDLSDNLLSGSL-----TVSLFTN------------------LQSLSYLDVS 258
G+L+ L +L + N SG + +SL N L+ L+ LD+S
Sbjct: 183 GKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLS 242
Query: 259 NNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSV--------------L 304
N L +IP L LS L + G I ELGNCK+ KS+ L
Sbjct: 243 YNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLEL 302
Query: 305 AELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSN 364
+E+ + TFSA NQLSG LPSW+GKW ++S+ L NN+F G IP E+ +C MLK++ L++
Sbjct: 303 SEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLAS 362
Query: 365 NKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQ----------------- 407
N LSGSIPREL S SL I+L GN+LSGTIE+VF C++L +
Sbjct: 363 NLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLW 422
Query: 408 ---LEKLDLSSNMLTGRIPK---------------------------------------- 424
L LDL SN TG IPK
Sbjct: 423 KLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDN 482
Query: 425 --------EIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIAD 476
EIG L S+ +L LN+N F G IP+ LGD TSL L+LG+NNL G IP+KI
Sbjct: 483 QLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITA 542
Query: 477 LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGS 536
LAQLQ L LSYNNLS I SK S+YFH++ +PDLS+ ++ FDLSYN LSGPIP+ELG
Sbjct: 543 LAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGE 602
Query: 537 CVVV---------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
C+V+ L+G IP SL L+ L+LSGN L+ +P GN L L+L+ N
Sbjct: 603 CLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANN 662
Query: 588 EFDGN 592
+ +G+
Sbjct: 663 QLNGH 667
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Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1 | Back alignment and function description |
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Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 182/533 (34%), Positives = 267/533 (50%), Gaps = 58/533 (10%)
Query: 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGEN 163
L + Y L L G + P +LSKL +LS N L G+ SP + NLK L +L L +N
Sbjct: 101 LSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQN 160
Query: 164 QLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGE 223
L+ +PS+LG + + L+L N TG +PS LG++K L L N G +P LG
Sbjct: 161 YLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGN 220
Query: 224 LTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGI 283
+ + DL LS N L+GS+ +L NL++L L + N L+G IPPEI +++ +++ L
Sbjct: 221 MESMTDLALSQNKLTGSIPSTL-GNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQ 279
Query: 284 NQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQF 343
N+ TGSI S LGN KN L L +F N L+G +P LG M + L+NN+
Sbjct: 280 NKLTGSIPSSLGNLKN----LTLLSLF-----QNYLTGGIPPKLGNIESMIDLELSNNKL 330
Query: 344 IGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCT 403
G IP +GN L + L N L+G IP EL + ES++++ L+ N L+G+I FG
Sbjct: 331 TGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLK 390
Query: 404 ---------------------NLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFF 442
N+ + LDLS N LTG +P GN ++ L L N
Sbjct: 391 NLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHL 450
Query: 443 NGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSK----- 497
+G+IP + +S+ L L L NN G PE + +LQ + L YN+L PI
Sbjct: 451 SGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCK 510
Query: 498 ------------HSSYFHEVNI-PDLS---YSHNYRKFDLSYNMLSGPIPKELGSCVVV- 540
F I PDL+ +SHN ++S N P +LG+ ++
Sbjct: 511 SLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSP---KLGALIMSN 567
Query: 541 --LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
+TG IP + +++ V+L+LS N L +P + GNL L+ L L+ N+ G
Sbjct: 568 NNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSG 620
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
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Score = 236 bits (601), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 184/554 (33%), Positives = 279/554 (50%), Gaps = 59/554 (10%)
Query: 87 RRLGLAIANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLR---VLNLSQNLLFG 143
++L ++ AN L E L + + S G V + + LSKLR L L+ N L G
Sbjct: 108 QKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTG 167
Query: 144 QPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN-SFTGEMPSELGDMKQ 202
+ P +S +LK L L +N L+GS+P++LG L+ LE + + N +G++PSE+GD
Sbjct: 168 KIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSN 227
Query: 203 LKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL 262
L L + +G +P LG+L +L+ L + ++SG + L N L L + N L
Sbjct: 228 LTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDL-GNCSELVDLFLYENSL 286
Query: 263 SGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGP 322
SG+IP EI L KL +L N G I E+GNC N K + +N LSG
Sbjct: 287 SGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMI---------DLSLNLLSGS 337
Query: 323 LPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLV 382
+PS +G+ + +E +++N+F G IP + NCS L ++L N++SG IP EL L
Sbjct: 338 IPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLT 397
Query: 383 EINLDGNMLSGTIEDVFGRCTNLSQLE---------------------KLDLSSNMLTGR 421
N L G+I CT+L L+ KL L SN L+G
Sbjct: 398 LFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGF 457
Query: 422 IPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQ 481
IP+EIGN S+ L+L N G IP +G +N L+ +N L+G +P++I ++LQ
Sbjct: 458 IPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQ 517
Query: 482 FLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSH-------------NYRKFDLSYNMLSG 528
+DLS N+L + + SS + + D+S + + K LS N+ SG
Sbjct: 518 MIDLSNNSLEGSLPNPVSS-LSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSG 576
Query: 529 PIPKELGSCVVV---------LTGYIPRSLGHL-SCSVKLNLSGNKLSVLVPTSFGNLNG 578
IP LG C + L+G IP LG + + + LNLS N+L+ +P+ +LN
Sbjct: 577 SIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNK 636
Query: 579 LTNLDLSYNEFDGN 592
L+ LDLS+N +G+
Sbjct: 637 LSILDLSHNMLEGD 650
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
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Score = 235 bits (600), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 182/523 (34%), Positives = 261/523 (49%), Gaps = 39/523 (7%)
Query: 90 GLAIANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQV 149
G+ +N D E L L L + L G +SP + L L+ L+LS N L G+ ++
Sbjct: 63 GVMCSNYSSDPEVLSLN-----LSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEI 117
Query: 150 SNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209
N L++L L NQ G +P ++G L LE L + +N +G +P E+G++ L L
Sbjct: 118 GNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTY 177
Query: 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPE 269
N +G +P +G L RL N++SGSL S +SL L ++ N LSG +P E
Sbjct: 178 SNNISGQLPRSIGNLKRLTSFRAGQNMISGSLP-SEIGGCESLVMLGLAQNQLSGELPKE 236
Query: 270 ISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGK 329
I LKKLS L N+F+G I E+ NC + + T + NQL GP+P LG
Sbjct: 237 IGMLKKLSQVILWENEFSGFIPREISNCTSLE---------TLALYKNQLVGPIPKELGD 287
Query: 330 WNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGN 389
+E ++L N G IP E+GN S I S N L+G IP EL + E L + L N
Sbjct: 288 LQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFEN 347
Query: 390 MLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMR 449
L+GTI NLS KLDLS N LTG IP LR + +L+L N +G+IP +
Sbjct: 348 QLTGTIPVELSTLKNLS---KLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPK 404
Query: 450 LGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNI-- 507
LG + L +L++ +N+L+G IP + + + L+L NNLS I + ++ V +
Sbjct: 405 LGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRL 464
Query: 508 ----------PDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTGYIPRS 548
+L N +L N G IP+E+G+C + TG +PR
Sbjct: 465 ARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPRE 524
Query: 549 LGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
+G LS LN+S NKL+ VP+ N L LD+ N F G
Sbjct: 525 IGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSG 567
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2 | Back alignment and function description |
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Score = 235 bits (600), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 183/528 (34%), Positives = 257/528 (48%), Gaps = 81/528 (15%)
Query: 133 VLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGE 192
LNLS + G+ P++S+LK LK + L N GS+PSQLG + LE + L SNSFTG
Sbjct: 72 TLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGN 131
Query: 193 MPSELGDMKQLKSLD------------------------FSGNGFNGT------------ 216
+P LG ++ L++L F+GNG NG+
Sbjct: 132 IPDTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELT 191
Query: 217 ------------VPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG 264
VP LG +T LQ+L L+DN L G+L V+L NL++L YLDV NN L G
Sbjct: 192 TLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTL-NNLENLVYLDVRNNSLVG 250
Query: 265 NIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLP 324
IP + K++ L NQFTG + LGNC + + F A LSGP+P
Sbjct: 251 AIPLDFVSCKQIDTISLSNNQFTGGLPPGLGNCTSLRE---------FGAFSCALSGPIP 301
Query: 325 SWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEI 384
S G+ ++++++L N F GRIP E+G C + ++L N+L G IP EL L +
Sbjct: 302 SCFGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYL 361
Query: 385 NLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG 444
+L N LSG + + + L+ L L N L+G +P ++ L+ + L L N F G
Sbjct: 362 HLYTNNLSGEVPLSIWK---IQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHFTG 418
Query: 445 SIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSK------- 497
IP LG ++SL +L+L N G IP + +L+ L L YN L + S
Sbjct: 419 VIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGGCSTL 478
Query: 498 HSSYFHEVN----IPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTGY 544
E N +PD N FDLS N +GPIP LG+ V L+G
Sbjct: 479 ERLILEENNLRGGLPDFVEKQNLLFFDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGS 538
Query: 545 IPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592
IP LG L LNLS N L ++P+ N + L+ LD S+N +G+
Sbjct: 539 IPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNGS 586
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Possible role in short-day photoperiod floral induction. Ipomoea nil (taxid: 35883) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 193/516 (37%), Positives = 269/516 (52%), Gaps = 46/516 (8%)
Query: 117 LKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVL 176
L GP+ P L+ LR+L+LS N L G ++ L L+ L L N+LSGS+PSQ+ L
Sbjct: 103 LSGPIPPSFGKLTHLRLLDLSSNSLSGPIPSELGRLSTLQFLILNANKLSGSIPSQISNL 162
Query: 177 TWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGN-GFNGTVPIRLGELTRLQDLDLSDN 235
L+ L L N G +PS G + L+ GN G +P +LG L L L + +
Sbjct: 163 FALQVLCLQDNLLNGSIPSSFGSLVSLQQFRLGGNTNLGGPIPAQLGFLKNLTTLGFAAS 222
Query: 236 LLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELG 295
LSGS+ S F NL +L L + + +SG IPP++ +L + YL +N+ TGSI ELG
Sbjct: 223 GLSGSIP-STFGNLVNLQTLALYDTEISGTIPPQLGLCSELRNLYLHMNKLTGSIPKELG 281
Query: 296 NCKNFKSVL-----------------AELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWL 338
+ S+L + L +F SA N L+G +P LGK +E + L
Sbjct: 282 KLQKITSLLLWGNSLSGVIPPEISNCSSLVVFDVSA--NDLTGDIPGDLGKLVWLEQLQL 339
Query: 339 NNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDV 398
++N F G+IP E+ NCS L ++L NKLSGSIP ++ + +SL L N +SGTI
Sbjct: 340 SDNMFTGQIPWELSNCSSLIALQLDKNKLSGSIPSQIGNLKSLQSFFLWENSISGTIPSS 399
Query: 399 FGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNI 458
FG CT+L LDLS N LTGRIP+E+ +L+ + L L N +G +P + SL
Sbjct: 400 FGNCTDLV---ALDLSRNKLTGRIPEELFSLKRLSKLLLLGNSLSGGLPKSVAKCQSLVR 456
Query: 459 LELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS------------RPILSKHSSYFHEVN 506
L +G N L+G IP++I +L L FLDL N+ S +L H++Y
Sbjct: 457 LRVGENQLSGQIPKEIGELQNLVFLDLYMNHFSGGLPYEISNITVLELLDVHNNYITGDI 516
Query: 507 IPDLSYSHNYRKFDLSYNMLSGPIPKELGSC---------VVVLTGYIPRSLGHLSCSVK 557
L N + DLS N +G IP G+ +LTG IP+S+ +L
Sbjct: 517 PAQLGNLVNLEQLDLSRNSFTGNIPLSFGNLSYLNKLILNNNLLTGQIPKSIKNLQKLTL 576
Query: 558 LNLSGNKLSVLVPTSFGNLNGLT-NLDLSYNEFDGN 592
L+LS N LS +P G + LT NLDLSYN F GN
Sbjct: 577 LDLSYNSLSGEIPQELGQVTSLTINLDLSYNTFTGN 612
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGR3|Y4265_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (576), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 171/529 (32%), Positives = 261/529 (49%), Gaps = 69/529 (13%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186
D ++L +L+LS N L G ++ LK+LK LSL N L G +P ++G L+ L L L
Sbjct: 115 DFTELELLDLSDNSLSGDIPVEIFRLKKLKTLSLNTNNLEGHIPMEIGNLSGLVELMLFD 174
Query: 187 NSFTGEMPSELGDMKQLKSLDFSGN-GFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSL 245
N +GE+P +G++K L+ L GN G +P +G L L L++ LSG L S+
Sbjct: 175 NKLSGEIPRSIGELKNLQVLRAGGNKNLRGELPWEIGNCENLVMLGLAETSLSGKLPASI 234
Query: 246 FTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVL- 304
NL+ + + + +LLSG IP EI + +L + YL N +GSI + +G K +S+L
Sbjct: 235 -GNLKRVQTIAIYTSLLSGPIPDEIGYCTELQNLYLYQNSISGSIPTTIGGLKKLQSLLL 293
Query: 305 ----------------AELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIP 348
EL + FS N L+G +P GK ++ + L+ NQ G IP
Sbjct: 294 WQNNLVGKIPTELGNCPELWLIDFSE--NLLTGTIPRSFGKLENLQELQLSVNQISGTIP 351
Query: 349 LEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQL 408
E+ NC+ L ++ + NN ++G IP +++ SL N L+G I +C +L
Sbjct: 352 EELTNCTKLTHLEIDNNLITGEIPSLMSNLRSLTMFFAWQNKLTGNIPQSLSQC---REL 408
Query: 409 EKLDLSSNMLTGRIPKE------------------------IGNLRSIQILKLNSNFFNG 444
+ +DLS N L+G IPKE IGN ++ L+LN N G
Sbjct: 409 QAIDLSYNSLSGSIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTNLYRLRLNGNRLAG 468
Query: 445 SIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSK------- 497
SIP +G+ +LN +++ N L GSIP I+ L+FLDL N+LS +L
Sbjct: 469 SIPSEIGNLKNLNFVDISENRLVGSIPPAISGCESLEFLDLHTNSLSGSLLGTTLPKSLK 528
Query: 498 ----HSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTGY 544
+ P + K +L+ N LSG IP+E+ +C + +G
Sbjct: 529 FIDFSDNALSSTLPPGIGLLTELTKLNLAKNRLSGEIPREISTCRSLQLLNLGENDFSGE 588
Query: 545 IPRSLGHL-SCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592
IP LG + S ++ LNLS N+ +P+ F +L L LD+S+N+ GN
Sbjct: 589 IPDELGQIPSLAISLNLSCNRFVGEIPSRFSDLKNLGVLDVSHNQLTGN 637
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (575), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 177/515 (34%), Positives = 266/515 (51%), Gaps = 78/515 (15%)
Query: 120 PVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWL 179
PVS L LSKL+ L++ +L G+ ++ N L L L +N LSG+LP +LG L L
Sbjct: 244 PVS--LGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNL 301
Query: 180 ETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSG 239
E + L N+ G +P E+G MK L ++D S N F+GT+P G L+ LQ+L LS N ++G
Sbjct: 302 EKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITG 361
Query: 240 SLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKN 299
S+ S+ +N L + N +SG IPPEI LK+L+ N+ G+I EL C+N
Sbjct: 362 SIP-SILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQN 420
Query: 300 FKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKY 359
++ N L+G LP+ L + + + L +N G IPLE+GNC+ L
Sbjct: 421 LQA---------LDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVR 471
Query: 360 IRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRC----------------- 402
+RL NN+++G IP+ + ++L ++L N LSG + C
Sbjct: 472 LRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYL 531
Query: 403 ----TNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNI 458
++L++L+ LD+SSN LTG+IP +G+L S+ L L+ N FNG IP LG T+L +
Sbjct: 532 PLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQL 591
Query: 459 LELGNNNLNGSIPEKIADLAQLQF-LDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYR 517
L+L +NN++G+IPE++ D+ L L+LS+N+L I + S+ +
Sbjct: 592 LDLSSNNISGTIPEELFDIQDLDIALNLSWNSLDGFIPERISAL------------NRLS 639
Query: 518 KFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTS--FGN 575
D+S+NMLSG + +L L V LN+S N+ S +P S F
Sbjct: 640 VLDISHNMLSGDL----------------SALSGLENLVSLNISHNRFSGYLPDSKVFRQ 683
Query: 576 LNGLTNLDLSYNEFDGNNKFCEKNGIGGGGFGTVF 610
L G E +GNN C K GF + F
Sbjct: 684 LIGA--------EMEGNNGLCSK------GFRSCF 704
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 189/553 (34%), Positives = 275/553 (49%), Gaps = 73/553 (13%)
Query: 105 LRVVYQV-LRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKR--------- 154
LR V V L +L G +SPL+ L LR LN+S N + G P PQ +L R
Sbjct: 66 LRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISG-PIPQDLSLCRSLEVLDLCT 124
Query: 155 ----------------LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELG 198
LK L L EN L GS+P Q+G L+ L+ L + SN+ TG +P +
Sbjct: 125 NRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMA 184
Query: 199 DMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVS 258
++QL+ + NGF+G +P + L+ L L++NLL GSL L LQ+L+ L +
Sbjct: 185 KLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQL-EKLQNLTDLILW 243
Query: 259 NNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSV--------------- 303
N LSG IPP + ++ +L L N FTGSI E+G K +
Sbjct: 244 QNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREI 303
Query: 304 --LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIR 361
L + FS NQL+G +P G ++ + L N +G IP E+G ++L+ +
Sbjct: 304 GNLIDAAEIDFSE--NQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLD 361
Query: 362 LSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGR 421
LS N+L+G+IP+EL LV++ L N L G I + G +N S LD+S+N L+G
Sbjct: 362 LSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFS---VLDMSANSLSGP 418
Query: 422 IPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQ 481
IP +++ +L L SN +G+IP L SL L LG+N L GS+P ++ +L L
Sbjct: 419 IPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLT 478
Query: 482 FLDLSYNNLSRPILS-------------KHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSG 528
L+L N LS I + ++++ E+ P++ F++S N L+G
Sbjct: 479 ALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIP-PEIGNLTKIVGFNISSNQLTG 537
Query: 529 PIPKELGSCVVV---------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGL 579
IPKELGSCV + +GYI + LG L L LS N+L+ +P SFG+L L
Sbjct: 538 HIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRL 597
Query: 580 TNLDLSYNEFDGN 592
L L N N
Sbjct: 598 MELQLGGNLLSEN 610
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (569), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 169/507 (33%), Positives = 251/507 (49%), Gaps = 43/507 (8%)
Query: 112 LRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQ-PSPQVSNLKRLKMLSLGENQLSGSLP 170
L + GP+ P + +L +LR LNLS N+ G P S L L++L L N L+G LP
Sbjct: 100 LAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLP 159
Query: 171 SQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDL 230
L LT L L L N F+G++P+ G L+ L SGN G +P +G LT L++L
Sbjct: 160 VSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNLTTLREL 219
Query: 231 DLS-DNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGS 289
+ N L + NL L D +N L+G IPPEI L+KL +L +N FTG+
Sbjct: 220 YIGYYNAFENGLPPEI-GNLSELVRFDAANCGLTGEIPPEIGKLQKLDTLFLQVNAFTGT 278
Query: 290 IQSELGNCKNFKSVLAELQIFT------FSA---------GMNQLSGPLPSWLGKWNQME 334
I ELG + KS+ +FT FS N+L G +P ++G+ ++E
Sbjct: 279 ITQELGLISSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGAIPEFIGEMPELE 338
Query: 335 SVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGT 394
+ L N F G IP ++G L + LS+NKL+G++P + L+ + GN L G+
Sbjct: 339 VLQLWENNFTGSIPQKLGENGRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLGNFLFGS 398
Query: 395 IEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGD-S 453
I D G+C +L+++ + N L G IPKE+ L + ++L N+ G +P+ G S
Sbjct: 399 IPDSLGKCESLTRIR---MGENFLNGSIPKELFGLPKLSQVELQDNYLTGELPISGGGVS 455
Query: 454 TSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYS 513
L + L NN L+GS+P I +L+ +Q L L N S I P++
Sbjct: 456 GDLGQISLSNNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSI------------PPEIGRL 503
Query: 514 HNYRKFDLSYNMLSGPIPKELGSCVVV---------LTGYIPRSLGHLSCSVKLNLSGNK 564
K D S+N+ SG I E+ C ++ L+G IP L + LNLS N
Sbjct: 504 QQLSKLDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYLNLSRNH 563
Query: 565 LSVLVPTSFGNLNGLTNLDLSYNEFDG 591
L +P + ++ LT++D SYN G
Sbjct: 564 LVGSIPVTIASMQSLTSVDFSYNNLSG 590
|
Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | ||||||
| 224120068 | 1237 | predicted protein [Populus trichocarpa] | 0.666 | 0.392 | 0.412 | 1e-109 | |
| 224136952 | 1215 | predicted protein [Populus trichocarpa] | 0.665 | 0.399 | 0.393 | 1e-101 | |
| 255539505 | 1303 | leucine-rich repeat receptor protein kin | 0.662 | 0.370 | 0.388 | 2e-99 | |
| 147816099 | 1147 | hypothetical protein VITISV_015708 [Viti | 0.663 | 0.421 | 0.402 | 2e-98 | |
| 225455406 | 1299 | PREDICTED: leucine-rich repeat receptor | 0.663 | 0.372 | 0.402 | 4e-98 | |
| 449446181 | 1298 | PREDICTED: leucine-rich repeat receptor | 0.668 | 0.375 | 0.375 | 5e-96 | |
| 356574479 | 1268 | PREDICTED: leucine-rich repeat receptor | 0.654 | 0.376 | 0.390 | 6e-92 | |
| 23304947 | 1192 | extra sporogenous cells [Arabidopsis tha | 0.672 | 0.411 | 0.4 | 6e-92 | |
| 15240747 | 1192 | leucine-rich repeat receptor protein kin | 0.672 | 0.411 | 0.396 | 2e-90 | |
| 449527203 | 1298 | PREDICTED: leucine-rich repeat receptor | 0.668 | 0.375 | 0.368 | 1e-89 |
| >gi|224120068|ref|XP_002318234.1| predicted protein [Populus trichocarpa] gi|222858907|gb|EEE96454.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 280/678 (41%), Positives = 351/678 (51%), Gaps = 192/678 (28%)
Query: 106 RVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQL 165
RVV +L Q L+GP+ LFDLS L V +LS NLLFG+ Q+SNLKRLK LSLG+N L
Sbjct: 70 RVVSLILSAQGLEGPLYSSLFDLSSLTVFDLSYNLLFGEVPHQISNLKRLKHLSLGDNLL 129
Query: 166 SGSLPS------------------------QLGVLTWLETLSLCSNSFTGEMPSELGD-- 199
SG LPS +LG L+ L TL L SN FTG +P++LG
Sbjct: 130 SGELPSELGLLTQLQTLQLGPNSFAGKIPPELGRLSQLNTLDLSSNGFTGSVPNQLGSPV 189
Query: 200 ----MKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLT---------VSLF 246
++ L SLD S N F+G +P +G L L DL + NL SG L V+ F
Sbjct: 190 TLFKLESLTSLDISNNSFSGPIPPEIGNLKNLSDLYIGVNLFSGPLPPQIGDLSRLVNFF 249
Query: 247 --------------TNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQS 292
+NL+SLS LD+S N L +IP + ++ LS YL ++ GSI +
Sbjct: 250 APSCAITGPLPEEISNLKSLSKLDLSYNPLKCSIPKSVGKMESLSILYLVYSELNGSIPA 309
Query: 293 ELGNCKNFKSV--------------LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWL 338
ELGNCKN K++ L+ L + TFSA NQLSGPLP+WLGKWNQ+ES+ L
Sbjct: 310 ELGNCKNLKTLMLSFNSLSGVLPEELSMLPMLTFSADKNQLSGPLPAWLGKWNQVESLLL 369
Query: 339 NNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDV 398
+NN+F G+IP EVGNC+ L+ I LS+N LSG IPREL + L+EI+LDGN L+G IEDV
Sbjct: 370 SNNRFTGKIPAEVGNCTALRVISLSSNMLSGEIPRELCNPVELMEIDLDGNFLAGDIEDV 429
Query: 399 FGRCTNLSQ--------------------LEKLDLSSNMLTGRI---------------- 422
F +CTNLSQ L LDL SN +G I
Sbjct: 430 FLKCTNLSQLVLMNNQINGSIPEYLAELPLMVLDLDSNNFSGTIPLSLWNSLNLMEFSAA 489
Query: 423 --------------------------------PKEIGNLRSIQILKLNSNFFNGSIPMRL 450
PKEIGNL ++ +L LNSN F G+IP+ L
Sbjct: 490 NNFLEGSLPAEIGNAVQLERLVLSNNQLGGTIPKEIGNLTALSVLNLNSNLFEGNIPVEL 549
Query: 451 GDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDL 510
G S +L L+LGNN L GSIPEK+ADL QL L LS+N LS I SK S YF E +IPD
Sbjct: 550 GHSVALTTLDLGNNQLCGSIPEKLADLVQLHCLVLSHNKLSGSIPSKPSLYFREASIPDS 609
Query: 511 SYSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTGYIPRSLGHLS-------- 553
S+ + FDLS+NMLSG IP+E+G+ + V L G +P SL L+
Sbjct: 610 SFFQHLGVFDLSHNMLSGSIPEEMGNLMFVVDLLLNNNKLAGEMPGSLSRLTNLTTLDLS 669
Query: 554 ---------------------------------------CS-VKLNLSGNKLSVLVPTSF 573
CS VKLNL+GN+L VP S
Sbjct: 670 GNMLTGSIPPELVDSSKLQGLYLGNNQLTGTIPGRLGVLCSLVKLNLTGNQLHGPVPRSL 729
Query: 574 GNLNGLTNLDLSYNEFDG 591
G+L LT+LDLSYNE DG
Sbjct: 730 GDLKALTHLDLSYNELDG 747
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136952|ref|XP_002322457.1| predicted protein [Populus trichocarpa] gi|222869453|gb|EEF06584.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 267/679 (39%), Positives = 343/679 (50%), Gaps = 194/679 (28%)
Query: 106 RVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLG---- 161
RVV +L TQSL+G + P LF LS L +L+LS NL G+ QVSNLKRLK LSLG
Sbjct: 70 RVVSLILSTQSLRGRLHPSLFSLSSLTILDLSYNLFVGEIPHQVSNLKRLKHLSLGGNLL 129
Query: 162 --------------------------------------------ENQLSGSLPSQLGV-- 175
N L+GS+PSQL
Sbjct: 130 SGELPRELGVLTRLQTLQLGPNSFTGKIPPEVGKLSQLNTLDLSSNGLTGSVPSQLSSPV 189
Query: 176 ----LTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLD 231
L L++L + +NSF+G +P E+G++K L L N F+G P +G+L+RL++
Sbjct: 190 NLFKLESLKSLDISNNSFSGPIPPEIGNLKNLSDLYIGINLFSGPFPPEIGDLSRLENFF 249
Query: 232 LSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQ 291
++G + +NL+SL+ LD+S N L +IP + ++ LS L ++ GSI
Sbjct: 250 APSCSITGPFPEEI-SNLKSLNKLDLSYNPLRCSIPKSVGAMESLSILNLVYSELNGSIP 308
Query: 292 SELGNCKNFKSV--------------LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVW 337
+ELGNCKN K+V L+ L + TFSA NQLSGPLP WLGKWNQ+ES+
Sbjct: 309 AELGNCKNLKTVMLSFNSLSGVLPEELSMLPMLTFSADKNQLSGPLPHWLGKWNQVESLL 368
Query: 338 LNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIED 397
L+NN+F G+IP E+GNCS L+ I LS+N LSG IPREL + L+EI+LD N L+G IED
Sbjct: 369 LSNNRFSGKIPPEIGNCSALRVISLSSNLLSGEIPRELCKAVDLMEIDLDVNFLTGGIED 428
Query: 398 VFGRCTNLSQ--------------------LEKLDLSSNMLTGRI--------------- 422
VF +CTNLSQ L LDL SN TG I
Sbjct: 429 VFLKCTNLSQLVLMDNQIDGSIPEYLAGLPLTVLDLDSNNFTGTIPVSLWNSMTLMEFSA 488
Query: 423 ---------------------------------PKEIGNLRSIQILKLNSNFFNGSIPMR 449
PKEIGNL ++ +L LNSN G+IP+
Sbjct: 489 ANNLLEGSLPVEIGNAVQLERLVLSNNQLGGTIPKEIGNLTALSVLNLNSNLLEGTIPVE 548
Query: 450 LGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPD 509
LG S +L L+LGNN L+GSIPEK+ADL QL L LS+N LS PI S+ S YF E +IPD
Sbjct: 549 LGHSAALTTLDLGNNQLSGSIPEKLADLVQLHCLVLSHNKLSGPIPSEPSLYFREASIPD 608
Query: 510 LSYSHNYRKFDLSYNMLSGPIPKELGSCVVV----------------------------- 540
S+ + FDLS+NMLSG IP+E+G+ +VV
Sbjct: 609 SSFFQHLGVFDLSHNMLSGSIPEEMGNLMVVVDLLLNNNKLSGEIPGSLSRLTNLTTLDL 668
Query: 541 ----LTGYIPRSLGH------------------------LSCSVKLNLSGNKLSVLVPTS 572
LTG IP LG L VKLNL+GN+L VP S
Sbjct: 669 SGNMLTGSIPPELGDSSKLQGLYLGNNQLSGTIPGRLGVLGSLVKLNLTGNQLYGPVPRS 728
Query: 573 FGNLNGLTNLDLSYNEFDG 591
FG+L LT+LDLSYNE DG
Sbjct: 729 FGDLKELTHLDLSYNELDG 747
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539505|ref|XP_002510817.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223549932|gb|EEF51419.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 253/652 (38%), Positives = 332/652 (50%), Gaps = 169/652 (25%)
Query: 106 RVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQL 165
RV VL Q LKGP+SP LF LS L VL++S+NL FG+ Q+S LK LK L L NQL
Sbjct: 73 RVTSLVLTNQLLKGPLSPSLFYLSSLTVLDVSKNLFFGEIPLQISRLKHLKQLCLAGNQL 132
Query: 166 SGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELT 225
SG +PSQLG LT L+ L L SNSF+G++P E G + Q+ +LD S N GTVP +LG++
Sbjct: 133 SGEIPSQLGDLTQLQILKLGSNSFSGKIPPEFGKLTQIDTLDLSTNALFGTVPSQLGQMI 192
Query: 226 RLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSN------------------------NL 261
L+ LDL +NLLSGSL + F NL+SL+ +D+SN N
Sbjct: 193 HLRFLDLGNNLLSGSLPFAFFNNLKSLTSMDISNNSFSGVIPPEIGNLTNLTDLYIGINS 252
Query: 262 LSGNIPPEISHLKKLSDHY----------------------------------------- 280
SG +PPEI L KL + +
Sbjct: 253 FSGQLPPEIGSLAKLENFFSPSCLISGPLPEQISKLKSLSKLDLSYNPLRCSIPKSIGKL 312
Query: 281 -------LGINQFTGSIQSELGNCKNFKSV--------------LAELQIFTFSAGMNQL 319
L ++ GSI ELGNC+N K++ L +L + TFSA NQL
Sbjct: 313 QNLSILNLAYSELNGSIPGELGNCRNLKTIMLSFNSLSGSLPEELFQLPMLTFSAEKNQL 372
Query: 320 SGPLPSWLGKWNQMESVWLNNNQF------------------------IGRIPLEVGN-- 353
SGPLPSWLG+WN ME ++L++N+F G+IP E+ N
Sbjct: 373 SGPLPSWLGRWNHMEWLFLSSNEFSGKLPPEIGNCSSLKHISLSNNLLTGKIPRELCNAV 432
Query: 354 ----------------------CSMLKYIRLSNNKLSGSIPRELND-------------- 377
C L + L +N+++GSIP L +
Sbjct: 433 SLMEIDLDGNFFSGTIDDVFPNCGNLTQLVLVDNQITGSIPEYLAELPLMVLDLDSNNFT 492
Query: 378 ---------SESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGN 428
S SL+E + N+L G++ G N QL++L LSSN L G +PKEIG
Sbjct: 493 GAIPVSLWKSTSLMEFSASNNLLGGSLPMEIG---NAVQLQRLVLSSNQLKGTVPKEIGK 549
Query: 429 LRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYN 488
L S+ +L LNSN G IP+ LGD +L L+LGNN L GSIPE + DL +LQ L LSYN
Sbjct: 550 LTSLSVLNLNSNLLEGDIPVELGDCIALTTLDLGNNRLTGSIPESLVDLVELQCLVLSYN 609
Query: 489 NLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV-------- 540
NLS I SK S YF + NIPD S+ ++ FDLS+NMLSG IP+ELG+ +V+
Sbjct: 610 NLSGSIPSKSSLYFRQANIPDSSFLQHHGVFDLSHNMLSGSIPEELGNLLVIVDLLINNN 669
Query: 541 -LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
L+G IPRSL L+ L+LSGN LS +P FG+ + L L L N+ G
Sbjct: 670 MLSGAIPRSLSRLTNLTTLDLSGNVLSGPIPLEFGHSSKLQGLYLGKNQLSG 721
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816099|emb|CAN61953.1| hypothetical protein VITISV_015708 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 281/699 (40%), Positives = 348/699 (49%), Gaps = 215/699 (30%)
Query: 106 RVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQL 165
RV VL TQSL+G +SP LF LS L VL+LS NL G SP ++ L+RLK L LG+N+L
Sbjct: 70 RVTSLVLPTQSLEGALSPSLFSLSSLIVLDLSGNLFSGHLSPDIAGLRRLKHLLLGDNEL 129
Query: 166 SGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELT 225
SG +P QLG LT L TL L NSF G++P ELGD+ L+SLD SGN G +P ++G LT
Sbjct: 130 SGEIPRQLGELTQLVTLKLGPNSFIGKIPPELGDLTWLRSLDLSGNSLTGDLPTQIGNLT 189
Query: 226 RLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQ 285
L+ LD+ +NLLSG L+ +LFTNLQSL LDVSNN SGNIPPEI +LK L+D Y+GIN
Sbjct: 190 HLRLLDVXNNLLSGPLSPTLFTNLQSLISLDVSNNSFSGNIPPEIGNLKSLTDLYIGINH 249
Query: 286 FTGSIQSELGN---------------------------------------CKNFKSV--L 304
F+G + E+GN C KS+ L
Sbjct: 250 FSGQLPPEIGNLSSLQNFFSPSCSIRGPLPEQISELKSLNKLDLSYNPLKCSIPKSIGKL 309
Query: 305 AELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKY----- 359
L I F +L+G +P+ LGK ++++ L+ N G +P E+ ML +
Sbjct: 310 QNLTILNFVYA--ELNGSIPAELGKCRNLKTLMLSFNSISGSLPEELSELPMLSFSAEKN 367
Query: 360 ------------------------------------------IRLSNNKLSGSIPRELND 377
+ LSNN LSGSIP+EL +
Sbjct: 368 QLSGPLPSWLGKWNGIDSLLLSSNRFSGRIPPEIGNCSMLNHVSLSNNLLSGSIPKELCN 427
Query: 378 SESLVEINLDGNMLSGTIEDVFGRCTNLSQ--------------------LEKLDLSSNM 417
+ESL+EI+LD N LSG I+D F +C NL+Q L LDL SN
Sbjct: 428 AESLMEIDLDSNFLSGGIDDTFLKCKNLTQLVLVNNQIVGSIPEYLSELPLMVLDLDSNN 487
Query: 418 LTG------------------------------------------------RIPKEIGNL 429
TG IP+EIGNL
Sbjct: 488 FTGSIPVSLWNLVSLMEFSAANNLLEGSLPPEIGNAVALERLVLSNNRLKGTIPREIGNL 547
Query: 430 RSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNN 489
S+ +L LN N G IPM LGD SL L+LGNN LNGSIP++IADLAQLQ L LS+N+
Sbjct: 548 TSLSVLNLNLNLLEGIIPMELGDCISLTTLDLGNNLLNGSIPDRIADLAQLQCLVLSHND 607
Query: 490 LSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV--------- 540
LS I SK SSYF +VNIPD S+ ++ +DLSYN LSG IP+ELGSCVVV
Sbjct: 608 LSGSIPSKPSSYFRQVNIPDSSFVQHHGVYDLSYNRLSGSIPEELGSCVVVVDLLLSNNF 667
Query: 541 ------------------------LTGYI------------------------PRSLGHL 552
LTG I P SLG L
Sbjct: 668 LSGEIPISLSRLTNLTTLDLSGNLLTGSIPLKLGYSLKLQGLYLGNNQLTGTIPESLGRL 727
Query: 553 SCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
S VKLNL+GN+LS +P SFGNL GLT+ DLS NE DG
Sbjct: 728 SSLVKLNLTGNQLSGSIPFSFGNLTGLTHFDLSSNELDG 766
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225455406|ref|XP_002273978.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 365 bits (937), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 281/699 (40%), Positives = 348/699 (49%), Gaps = 215/699 (30%)
Query: 106 RVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQL 165
RV VL TQSL+G +SP LF LS L VL+LS NL G SP ++ L+RLK L LG+N+L
Sbjct: 70 RVTSLVLPTQSLEGALSPSLFSLSSLIVLDLSGNLFSGHLSPDIAGLRRLKHLLLGDNEL 129
Query: 166 SGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELT 225
SG +P QLG LT L TL L NSF G++P ELGD+ L+SLD SGN G +P ++G LT
Sbjct: 130 SGEIPRQLGELTQLVTLKLGPNSFIGKIPPELGDLTWLRSLDLSGNSLTGDLPTQIGNLT 189
Query: 226 RLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQ 285
L+ LD+ +NLLSG L+ +LFTNLQSL LDVSNN SGNIPPEI +LK L+D Y+GIN
Sbjct: 190 HLRLLDVGNNLLSGPLSPTLFTNLQSLISLDVSNNSFSGNIPPEIGNLKSLTDLYIGINH 249
Query: 286 FTGSIQSELGN---------------------------------------CKNFKSV--L 304
F+G + E+GN C KS+ L
Sbjct: 250 FSGQLPPEIGNLSSLQNFFSPSCSIRGPLPEQISELKSLNKLDLSYNPLKCSIPKSIGKL 309
Query: 305 AELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKY----- 359
L I F +L+G +P+ LGK ++++ L+ N G +P E+ ML +
Sbjct: 310 QNLTILNFVYA--ELNGSIPAELGKCRNLKTLMLSFNSISGSLPEELSELPMLSFSAEKN 367
Query: 360 ------------------------------------------IRLSNNKLSGSIPRELND 377
+ LSNN LSGSIP+EL +
Sbjct: 368 QLSGPLPSWLGKWNGIDSLLLSSNRFSGRIPPEIGNCSMLNHVSLSNNLLSGSIPKELCN 427
Query: 378 SESLVEINLDGNMLSGTIEDVFGRCTNLSQ--------------------LEKLDLSSNM 417
+ESL+EI+LD N LSG I+D F +C NL+Q L LDL SN
Sbjct: 428 AESLMEIDLDSNFLSGGIDDTFLKCKNLTQLVLVNNQIVGSIPEYLSELPLMVLDLDSNN 487
Query: 418 LTG------------------------------------------------RIPKEIGNL 429
TG IP+EIGNL
Sbjct: 488 FTGSIPVSLWNLVSLMEFSAANNLLEGSLPPEIGNAVALERLVLSNNRLKGTIPREIGNL 547
Query: 430 RSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNN 489
S+ +L LN N G IPM LGD SL L+LGNN LNGSIP++IADLAQLQ L LS+N+
Sbjct: 548 TSLSVLNLNLNLLEGIIPMELGDCISLTTLDLGNNLLNGSIPDRIADLAQLQCLVLSHND 607
Query: 490 LSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV--------- 540
LS I SK SSYF +VNIPD S+ ++ +DLSYN LSG IP+ELGSCVVV
Sbjct: 608 LSGSIPSKPSSYFRQVNIPDSSFVQHHGVYDLSYNRLSGSIPEELGSCVVVVDLLLSNNF 667
Query: 541 ------------------------LTGYI------------------------PRSLGHL 552
LTG I P SLG L
Sbjct: 668 LSGEIPISLSRLTNLTTLDLSGNLLTGSIPLKLGYSLKLQGLYLGNNQLTGTIPESLGRL 727
Query: 553 SCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
S VKLNL+GN+LS +P SFGNL GLT+ DLS NE DG
Sbjct: 728 SSLVKLNLTGNQLSGSIPFSFGNLTGLTHFDLSSNELDG 766
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446181|ref|XP_004140850.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 262/698 (37%), Positives = 350/698 (50%), Gaps = 211/698 (30%)
Query: 106 RVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQL 165
RV L + SLKG +S LFDL L VL+LS NLL+G PQ+ NL+ LK+L+LGENQ
Sbjct: 70 RVTELSLSSLSLKGQLSRSLFDLLSLSVLDLSNNLLYGSIPPQIYNLRSLKVLALGENQF 129
Query: 166 SGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELT 225
SG P +L LT LE L L +N F+G++P ELG++KQL++LD S N F G VP +G LT
Sbjct: 130 SGDFPIELTELTQLENLKLGANLFSGKIPPELGNLKQLRTLDLSSNAFVGNVPPHIGNLT 189
Query: 226 RLQDLDLSDNLLSGSLTVSLFT------------------------NLQSLSYLDVSNNL 261
++ LDL +NLLSGSL +++FT NL+ L+ L + N
Sbjct: 190 KILSLDLGNNLLSGSLPLTIFTELTSLTSLDISNNSFSGSIPPEIGNLKHLAGLYIGINH 249
Query: 262 LSGNIPPEISHLKKLSDHY----------------------------------------- 280
SG +PPE+ +L L + +
Sbjct: 250 FSGELPPEVGNLVLLENFFSPSCSLTGPLPDELSKLKSLSKLDLSYNPLGCSIPKTIGEL 309
Query: 281 -------LGINQFTGSIQSELGNCKNFKSV--------------LAELQIFTFSAGMNQL 319
L + GSI +ELG C+N K++ L+EL + TFSA NQL
Sbjct: 310 QNLTILNLVYTELNGSIPAELGRCRNLKTLMLSFNYLSGVLPPELSELSMLTFSAERNQL 369
Query: 320 SGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSE 379
SGPLPSW GKW+ ++S+ L++N+F G IP E+GNCS L ++ LSNN L+G IP+E+ ++
Sbjct: 370 SGPLPSWFGKWDHVDSILLSSNRFTGGIPPEIGNCSKLNHLSLSNNLLTGPIPKEICNAA 429
Query: 380 SLVE-----------------------------------------------INLDGNMLS 392
SL+E INLD N +
Sbjct: 430 SLMEIDLDSNFLSGTIDDTFVTCKNLTQLVLVDNQIVGAIPEYFSDLPLLVINLDANNFT 489
Query: 393 GTIEDVFGRCTNL---------------------SQLEKLDLSSNMLTGRIPKEIGNLRS 431
G + +L + LE+L LS+N LTG IP EIGNL +
Sbjct: 490 GYLPTSIWNSVDLMEFSAANNQLEGHLPPEIGYAASLERLVLSNNRLTGIIPDEIGNLTA 549
Query: 432 IQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491
+ +L LNSN G+IP LGD ++L L+LGNN+LNGSIPEK+ADL++LQ L LS+NNLS
Sbjct: 550 LSVLNLNSNLLEGTIPAMLGDCSALTTLDLGNNSLNGSIPEKLADLSELQCLVLSHNNLS 609
Query: 492 RPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVV------------ 539
I SK S+YF ++ IPDLS+ ++ FDLS+N LSG IP ELG+CVV
Sbjct: 610 GAIPSKPSAYFRQLTIPDLSFVQHHGVFDLSHNRLSGTIPDELGNCVVVVDLLLNNNLLS 669
Query: 540 ---------------------VLTGYIPRSLG------------------------HLSC 554
LTG IP +G HL+
Sbjct: 670 GAIPSSLSQLTNLTTLDLSSNTLTGPIPAEIGKALKLQGLYLGNNRLMGMIPESFSHLNS 729
Query: 555 SVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592
VKLNL+GN+LS VP +FG L LT+LDLS NE DG+
Sbjct: 730 LVKLNLTGNRLSGSVPKTFGGLKALTHLDLSCNELDGD 767
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574479|ref|XP_003555374.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 345 bits (884), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 243/622 (39%), Positives = 326/622 (52%), Gaps = 145/622 (23%)
Query: 112 LRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPS 171
L + SL G + P + L+KLR L+LS N L G+ V NL +L+ L L N SGSLP
Sbjct: 120 LGSNSLAGKIPPEVGLLTKLRTLDLSGNSLAGEVPESVGNLTKLEFLDLSNNFFSGSLPV 179
Query: 172 QLGVLTWLETL---SLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQ 228
L T ++L + +NSF+G +P E+G+ + + +L N +GT+P +G L++L+
Sbjct: 180 SL--FTGAKSLISADISNNSFSGVIPPEIGNWRNISALYVGINKLSGTLPKEIGLLSKLE 237
Query: 229 DLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTG 288
L + G L + L+SL+ LD+S N L +IP I L+ L L Q G
Sbjct: 238 ILYSPSCSIEGPLPEEM-AKLKSLTKLDLSYNPLRCSIPKFIGELESLKILDLVFAQLNG 296
Query: 289 SIQSELGNCKNFKSV--------------LAELQIFTFSAGMNQLSGPLPSWLGKWNQME 334
S+ +ELGNCKN +SV L+EL + FSA NQL G LPSWLGKW+ ++
Sbjct: 297 SVPAELGNCKNLRSVMLSFNSLSGSLPEELSELPMLAFSAEKNQLHGHLPSWLGKWSNVD 356
Query: 335 SVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGT 394
S+ L+ N+F G IP E+GNCS L+++ LS+N L+G IP EL ++ SL+E++LD N LSG
Sbjct: 357 SLLLSANRFSGMIPPELGNCSALEHLSLSSNLLTGPIPEELCNAASLLEVDLDDNFLSGA 416
Query: 395 IEDVFGRCTNLSQ--------------------LEKLDLSSNMLTGRIPK---------- 424
I++VF +C NL+Q L LDL SN +G++P
Sbjct: 417 IDNVFVKCKNLTQLVLLNNRIVGSIPEYLSELPLMVLDLDSNNFSGKMPSGLWNSSTLME 476
Query: 425 --------------EIG------------------------NLRSIQILKLNSNFFNGSI 446
EIG +L+S+ +L LN N GSI
Sbjct: 477 FSAANNRLEGSLPVEIGSAVMLERLVLSNNRLTGTIPKEIGSLKSLSVLNLNGNMLEGSI 536
Query: 447 PMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVN 506
P LGD TSL ++LGNN LNGSIPEK+ +L+QLQ L LS+N LS I +K SSYF +++
Sbjct: 537 PTELGDCTSLTTMDLGNNKLNGSIPEKLVELSQLQCLVLSHNKLSGSIPAKKSSYFRQLS 596
Query: 507 IPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTGYIPRSL-------- 549
IPDLS+ + FDLS+N LSGPIP ELGSCVVV L+G IPRSL
Sbjct: 597 IPDLSFVQHLGVFDLSHNRLSGPIPDELGSCVVVVDLLVSNNMLSGSIPRSLSRLTNLTT 656
Query: 550 ----------------------------------------GHLSCSVKLNLSGNKLSVLV 569
G LS VKLNL+GNKLS +
Sbjct: 657 LDLSGNLLSGSIPQELGGVLKLQGLYLGQNQLSGTIPESFGKLSSLVKLNLTGNKLSGPI 716
Query: 570 PTSFGNLNGLTNLDLSYNEFDG 591
P SF N+ GLT+LDLS NE G
Sbjct: 717 PVSFQNMKGLTHLDLSSNELSG 738
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|23304947|emb|CAD42912.1| extra sporogenous cells [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 345 bits (884), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 242/605 (40%), Positives = 320/605 (52%), Gaps = 115/605 (19%)
Query: 103 LLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGE 162
LL RV L + SL+G + + L LR L L+ N G+ P++ NLK L+ L L
Sbjct: 63 LLGRVNSLSLPSLSLRGQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSG 122
Query: 163 NQLSGSLPSQLGVLTWLETLSLCSNSFTGEMP-SELGDMKQLKSLDFSGNGFNGTVPIRL 221
N L+G LPS+L L L L L N F+G +P S + L SLD S N +G +P +
Sbjct: 123 NSLTGLLPSRLSELPELLYLDLSDNHFSGSLPLSFFISLPALSSLDVSNNSLSGEIPPEI 182
Query: 222 GELTRLQDLDLSDNLLSGSL-----TVSLFTN------------------LQSLSYLDVS 258
G+L+ L +L + N SG + SL N L+ L+ LD+S
Sbjct: 183 GKLSNLSNLYMGLNSFSGQIPSEIGNTSLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLS 242
Query: 259 NNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSV--------------L 304
N L +IP L+ LS L + GSI ELGNCK+ KS+ L
Sbjct: 243 YNPLKCSIPKSFGELQNLSILNLVSAELIGSIPPELGNCKSLKSLMLSFNSLSGPLPLEL 302
Query: 305 AELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSN 364
+E+ + TFSA NQLSG LPSW+GKW ++S+ L NN+F G IP E+ +C MLK++ L++
Sbjct: 303 SEIPLLTFSAERNQLSGSLPSWIGKWKVLDSLLLANNRFSGEIPREIEDCPMLKHLSLAS 362
Query: 365 NKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQ----------------- 407
N LSGSIPREL S SL I+L GN+LSGTIE+VF C++L +
Sbjct: 363 NLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLW 422
Query: 408 ---LEKLDLSSNMLTGRIPK---------------------------------------- 424
L LDL SN TG IPK
Sbjct: 423 KLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDN 482
Query: 425 --------EIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIAD 476
EIG L S+ +L LN+N F G IP+ LGD TSL L+LG+NNL G IP+KI
Sbjct: 483 QLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITA 542
Query: 477 LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGS 536
LAQLQ L LSYNNLS I SK S+YFH++++PDLS+ ++ FDLSYN LSGPIP+ELG
Sbjct: 543 LAQLQCLVLSYNNLSGSIPSKPSAYFHQIDMPDLSFLQHHGIFDLSYNRLSGPIPEELGE 602
Query: 537 CVVV---------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
C+V+ L+G IP SL L+ L+LSGN L+ +P GN L L+L+ N
Sbjct: 603 CLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANN 662
Query: 588 EFDGN 592
+ +G+
Sbjct: 663 QLNGH 667
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240747|ref|NP_196345.1| leucine-rich repeat receptor protein kinase EXS [Arabidopsis thaliana] gi|30913045|sp|Q9LYN8.1|EXS_ARATH RecName: Full=Leucine-rich repeat receptor protein kinase EXS; AltName: Full=Extra sporogenous cells protein; AltName: Full=Protein EXCESS MICROSPOROCYTES 1; Flags: Precursor gi|7546706|emb|CAB87284.1| receptor-like protein kinase-like protein [Arabidopsis thaliana] gi|22138765|emb|CAD32463.1| receptor-like protein kinase-like protein [Arabidopsis thaliana] gi|224589665|gb|ACN59364.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332003749|gb|AED91132.1| leucine-rich repeat receptor protein kinase EXS [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 240/605 (39%), Positives = 316/605 (52%), Gaps = 115/605 (19%)
Query: 103 LLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGE 162
LL RV L + SL+G + + L LR L L+ N G+ P++ NLK L+ L L
Sbjct: 63 LLGRVNSLSLPSLSLRGQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSG 122
Query: 163 NQLSGSLPSQLGVLTWLETLSLCSNSFTGEM-PSELGDMKQLKSLDFSGNGFNGTVPIRL 221
N L+G LP L L L L L N F+G + PS + L SLD S N +G +P +
Sbjct: 123 NSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEI 182
Query: 222 GELTRLQDLDLSDNLLSGSL-----TVSLFTN------------------LQSLSYLDVS 258
G+L+ L +L + N SG + +SL N L+ L+ LD+S
Sbjct: 183 GKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLS 242
Query: 259 NNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSV--------------L 304
N L +IP L LS L + G I ELGNCK+ KS+ L
Sbjct: 243 YNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLEL 302
Query: 305 AELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSN 364
+E+ + TFSA NQLSG LPSW+GKW ++S+ L NN+F G IP E+ +C MLK++ L++
Sbjct: 303 SEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLAS 362
Query: 365 NKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQ----------------- 407
N LSGSIPREL S SL I+L GN+LSGTIE+VF C++L +
Sbjct: 363 NLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLW 422
Query: 408 ---LEKLDLSSNMLTGRIPK---------------------------------------- 424
L LDL SN TG IPK
Sbjct: 423 KLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDN 482
Query: 425 --------EIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIAD 476
EIG L S+ +L LN+N F G IP+ LGD TSL L+LG+NNL G IP+KI
Sbjct: 483 QLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITA 542
Query: 477 LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGS 536
LAQLQ L LSYNNLS I SK S+YFH++ +PDLS+ ++ FDLSYN LSGPIP+ELG
Sbjct: 543 LAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGE 602
Query: 537 CVVV---------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
C+V+ L+G IP SL L+ L+LSGN L+ +P GN L L+L+ N
Sbjct: 603 CLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANN 662
Query: 588 EFDGN 592
+ +G+
Sbjct: 663 QLNGH 667
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527203|ref|XP_004170602.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 257/698 (36%), Positives = 347/698 (49%), Gaps = 211/698 (30%)
Query: 106 RVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQL 165
RV L + SLKG +S LFDL L VL+LS NLL+G PQ+ NL+ LK+L+LGENQ
Sbjct: 70 RVTELSLSSLSLKGQLSRSLFDLLSLSVLDLSNNLLYGSIPPQIYNLRSLKVLALGENQF 129
Query: 166 SGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELT 225
SG P +L LT LE L L +N F+G++P ELG++KQL++LD S N F G VP +G LT
Sbjct: 130 SGDFPIELTELTQLENLKLGANLFSGKIPPELGNLKQLRTLDLSSNAFVGNVPPHIGNLT 189
Query: 226 RLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQ 285
++ LDL +NLLSGSL +++FT L SL+ LD+SNN SG+IPPEI +LK L+ Y+GIN
Sbjct: 190 KILSLDLGNNLLSGSLPLTIFTELTSLTSLDISNNSFSGSIPPEIGNLKHLAGLYIGINH 249
Query: 286 FTGSIQSELGN---CKNFKS-----------------------------------VLAEL 307
F+G + E+GN +NF S + EL
Sbjct: 250 FSGELPPEVGNLVLLENFFSPSCSLTGPLPDELSKLKSLSKLDLSYNPLGCSIPKTIGEL 309
Query: 308 QIFT-FSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLE---------------- 350
Q T + +L+G +P+ LG+ ++++ L+ N G +P E
Sbjct: 310 QNLTILNLVYTELNGSIPAELGRCRNLKTLMLSFNYLSGVLPPELSELSMLTFSAERNQL 369
Query: 351 -------------------------------VGNCSMLKYIRLSNNKLSGSIPRELNDSE 379
+GNCS L ++ LSNN L+G IP+E+ ++
Sbjct: 370 SGPLPSWFGKWDHVDSILLSSNRFTGEIPPEIGNCSKLNHLSLSNNLLTGPIPKEICNAA 429
Query: 380 SLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLD--------------------------- 412
SL+EI+LD N LSGTI+D F C NL+QL +D
Sbjct: 430 SLMEIDLDSNFLSGTIDDTFVTCKNLTQLVLVDNQIVGAIPEYFSDLPLLVINLDANNFT 489
Query: 413 -----------------LSSNMLTGRIPKEIGNLRSIQILKL------------------ 437
++N L G +P +IG S++ L L
Sbjct: 490 GYLPTSIWNSVDLMEFSAANNQLEGHLPPDIGYAASLERLVLSNNRLTGIIPDEIGNLTA 549
Query: 438 ------NSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491
NSN G+IP LGD ++L L+LGNN+LNGSIPEK+ADL++LQ L LS+NNLS
Sbjct: 550 LSVLNLNSNLLEGTIPAMLGDCSALTTLDLGNNSLNGSIPEKLADLSELQCLVLSHNNLS 609
Query: 492 RPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVV------------ 539
I SK S+YF ++ IPDLS+ ++ FDLS+N LSG IP ELG+CVV
Sbjct: 610 GAIPSKPSAYFRQLTIPDLSFVQHHGVFDLSHNRLSGTIPDELGNCVVVVDLLLNNNLLS 669
Query: 540 ---------------------VLTGYIPRSLG------------------------HLSC 554
LTG IP +G HL+
Sbjct: 670 GAIPSSLSQLTNLTTLDLSSNTLTGPIPAEIGKALKLQGLYLGNNRLMGMIPESFSHLNS 729
Query: 555 SVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592
VKLNL+GN+LS VP +FG L LT+LDLS NE DG+
Sbjct: 730 LVKLNLTGNRLSGSVPKTFGGLKALTHLDLSCNELDGD 767
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | ||||||
| TAIR|locus:2182870 | 1192 | EMS1 "EXCESS MICROSPOROCYTES1" | 0.632 | 0.386 | 0.365 | 8.2e-93 | |
| TAIR|locus:2085949 | 1141 | AT3G24240 [Arabidopsis thalian | 0.626 | 0.400 | 0.330 | 1.2e-72 | |
| TAIR|locus:2160791 | 1102 | AT5G63930 [Arabidopsis thalian | 0.663 | 0.439 | 0.326 | 1.3e-71 | |
| TAIR|locus:2011339 | 1120 | AT1G35710 [Arabidopsis thalian | 0.647 | 0.421 | 0.316 | 2.1e-70 | |
| TAIR|locus:2167948 | 966 | ERL1 "ERECTA-like 1" [Arabidop | 0.614 | 0.463 | 0.322 | 2.3e-70 | |
| TAIR|locus:2097310 | 1002 | BAM2 "BARELY ANY MERISTEM 2" [ | 0.666 | 0.485 | 0.310 | 4.6e-70 | |
| TAIR|locus:2020417 | 1101 | AT1G17230 [Arabidopsis thalian | 0.628 | 0.415 | 0.333 | 3.6e-69 | |
| TAIR|locus:2154344 | 1135 | AT5G48940 [Arabidopsis thalian | 0.628 | 0.403 | 0.315 | 1.2e-68 | |
| TAIR|locus:2161158 | 1041 | PXY "PHLOEM INTERCALATED WITH | 0.651 | 0.456 | 0.303 | 2e-68 | |
| UNIPROTKB|Q8RZV7 | 1294 | P0413C03.22 "Putative extra sp | 0.669 | 0.377 | 0.298 | 6.6e-68 |
| TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 8.2e-93, Sum P(3) = 8.2e-93
Identities = 178/487 (36%), Positives = 245/487 (50%)
Query: 116 SLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSP-QVSNLKRLKMLSLGENQLSGSLPSQLG 174
S G + + ++S L+ + + F P P ++S LK L L L N L S+P G
Sbjct: 197 SFSGQIPSEIGNISLLKNF-AAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFG 255
Query: 175 VLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRXXXXXXXX 234
L L L+L S G +P ELG+ K LKSL S N +G +P+ L E+
Sbjct: 256 ELHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEIP--LLTFSAE 313
Query: 235 XXXXXXXTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSEL 294
S + L L ++NN SG IP EI L L N +GSI EL
Sbjct: 314 RNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPREL 373
Query: 295 GNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNC 354
C + L+ S N LSG + + + + L NNQ G IP ++
Sbjct: 374 --CGS-----GSLEAIDLSG--NLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKL 424
Query: 355 SMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLS 414
++ + L +N +G IP+ L S +L+E N L G + G N + L++L LS
Sbjct: 425 PLMA-LDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIG---NAASLKRLVLS 480
Query: 415 SNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTXXXXXXXXXXXXXXXXPEKI 474
N LTG IP+EIG L S+ +L LN+N F G IP+ LGD T P+KI
Sbjct: 481 DNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKI 540
Query: 475 ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKEL 534
LAQLQ L LSYNNLS I SK S+YFH++ +PDLS+ ++ FDLSYN LSGPIP+EL
Sbjct: 541 TALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEEL 600
Query: 535 GSCVVV---------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLS 585
G C+V+ L+G IP SL L+ L+LSGN L+ +P GN L L+L+
Sbjct: 601 GECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLA 660
Query: 586 YNEFDGN 592
N+ +G+
Sbjct: 661 NNQLNGH 667
|
|
| TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 1.2e-72, Sum P(2) = 1.2e-72
Identities = 163/493 (33%), Positives = 247/493 (50%)
Query: 111 VLRTQSLKGPVSPLLFDLSKLRVLNLSQNL-LFGQPSPQVSNLKRLKMLSLGENQLSGSL 169
+L L G + L LS L V+ + N + GQ ++ + L +L L E +SG+L
Sbjct: 183 ILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNL 242
Query: 170 PSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRXXX 229
PS LG L LETLS+ + +GE+PS+LG+ +L L N +G++P +G+LT+
Sbjct: 243 PSSLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQ 302
Query: 230 XXXXXXXXXXXXTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGS 289
+ N +L +D+S NLLSG+IP I L L + + N+F+GS
Sbjct: 303 LFLWQNSLVGGIPEEI-GNCSNLKMIDLSLNLLSGSIPSSIGRLSFLEEFMISDNKFSGS 361
Query: 290 IQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPL 349
I + + NC S L +LQ+ NQ+SG +PS LG ++ + +NQ G IP
Sbjct: 362 IPTTISNC----SSLVQLQL-----DKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPP 412
Query: 350 EVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLE 409
+ +C+ L+ + LS N L+G+IP L +L ++ L N LSG I G C S L
Sbjct: 413 GLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNC---SSLV 469
Query: 410 KLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTXXXXXXXXXXXXXXX 469
+L L N +TG IP IG+L+ I L +SN +G +P +G +
Sbjct: 470 RLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGS 529
Query: 470 XPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGP 529
P ++ L+ LQ LD+S N S I +S V++ K LS N+ SG
Sbjct: 530 LPNPVSSLSGLQVLDVSANQFSGKI---PASLGRLVSL---------NKLILSKNLFSGS 577
Query: 530 IPKELGSCVVV---------LTGYIPRSLGHL-SCSVKLNLSGNKLSVLVPTSFGNLNGL 579
IP LG C + L+G IP LG + + + LNLS N+L+ +P+ +LN L
Sbjct: 578 IPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKL 637
Query: 580 TNLDLSYNEFDGN 592
+ LDLS+N +G+
Sbjct: 638 SILDLSHNMLEGD 650
|
|
| TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 1.3e-71, Sum P(3) = 1.3e-71
Identities = 171/523 (32%), Positives = 244/523 (46%)
Query: 90 GLAIANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQV 149
G+ +N D E L L L + L G +SP + L L+ L+LS N L G+ ++
Sbjct: 63 GVMCSNYSSDPEVLSLN-----LSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEI 117
Query: 150 SNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209
N L++L L NQ G +P ++G L LE L + +N +G +P E+G++ L L
Sbjct: 118 GNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTY 177
Query: 210 GNGFNGTVPIRLGELTRXXXXXXXXXXXXXXXTVSLFTNLQSLSYLDVSNNLLSGNIPPE 269
N +G +P +G L R S +SL L ++ N LSG +P E
Sbjct: 178 SNNISGQLPRSIGNLKRLTSFRAGQNMISGSLP-SEIGGCESLVMLGLAQNQLSGELPKE 236
Query: 270 ISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGK 329
I LKKLS L N+F+G I E+ NC + ++ L ++ NQL GP+P LG
Sbjct: 237 IGMLKKLSQVILWENEFSGFIPREISNCTSLET----LALYK-----NQLVGPIPKELGD 287
Query: 330 WNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGN 389
+E ++L N G IP E+GN S I S N L+G IP EL + E L + L N
Sbjct: 288 LQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFEN 347
Query: 390 MLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMR 449
L+GTI NLS KLDLS N LTG IP LR + +L+L N +G+IP +
Sbjct: 348 QLTGTIPVELSTLKNLS---KLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPK 404
Query: 450 LGDSTXXXXXXXXXXXXXXXXPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNI-- 507
LG + P + + + L+L NNLS I + ++ V +
Sbjct: 405 LGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRL 464
Query: 508 ---------P-DLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTGYIPRS 548
P +L N +L N G IP+E+G+C + TG +PR
Sbjct: 465 ARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPRE 524
Query: 549 LGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
+G LS LN+S NKL+ VP+ N L LD+ N F G
Sbjct: 525 IGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSG 567
|
|
| TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 2.1e-70, Sum P(3) = 2.1e-70
Identities = 162/512 (31%), Positives = 254/512 (49%)
Query: 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGEN 163
L +++Y L T L G +SP L +L L VL L QN L ++ N++ + L+L +N
Sbjct: 125 LSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQN 184
Query: 164 QLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGE 223
+L+GS+PS LG L L L L N TG +P ELG+M+ + L S N G++P LG
Sbjct: 185 KLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGN 244
Query: 224 LTRXXXXXXXXXXXXXXXTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGI 283
L + N++S++ L +S N L+G+IP + +LK L+ L
Sbjct: 245 LKNLMVLYLYENYLTGVIPPEI-GNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQ 303
Query: 284 NQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQF 343
N TG I +LGN ++ + +L++ N+L+G +PS LG + ++L N
Sbjct: 304 NYLTGGIPPKLGNIES----MIDLELSN-----NKLTGSIPSSLGNLKNLTILYLYENYL 354
Query: 344 IGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCT 403
G IP E+GN + ++L+NNKL+GSIP + ++L + L N L+G I G
Sbjct: 355 TGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELG--- 411
Query: 404 NLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTXXXXXXXXX 463
N+ + LDLS N LTG +P GN ++ L L N +G+IP + +S+
Sbjct: 412 NMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDT 471
Query: 464 XXXXXXXPEKIADLAQLQFLDLSYNNLSRPIL----------------SKHSS-YFHEVN 506
PE + +LQ + L YN+L PI +K + F
Sbjct: 472 NNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFG 531
Query: 507 I-PDLSY---SHNYRKFDLSYNMLSGPIPKELGSCVVV---LTGYIPRSLGHLSCSVKLN 559
I PDL++ SHN ++S N P +LG+ ++ +TG IP + +++ V+L+
Sbjct: 532 IYPDLNFIDFSHNKFHGEISSNWEKSP---KLGALIMSNNNITGAIPTEIWNMTQLVELD 588
Query: 560 LSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
LS N L +P + GNL L+ L L+ N+ G
Sbjct: 589 LSTNNLFGELPEAIGNLTNLSRLRLNGNQLSG 620
|
|
| TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 2.3e-70, Sum P(3) = 2.3e-70
Identities = 157/487 (32%), Positives = 223/487 (45%)
Query: 107 VVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLS 166
VV L + +L G +SP + DL L+ ++L N L GQ ++ N L L L EN L
Sbjct: 73 VVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLY 132
Query: 167 GSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTR 226
G +P + L LETL+L +N TG +P+ L + LK LD +GN G + RL
Sbjct: 133 GDIPFSISKLKQLETLNLKNNQLTGPVPATLTQIPNLKRLDLAGNHLTGEIS-RLLYWNE 191
Query: 227 XXXXXXXXXXXXXXXTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQF 286
S L L Y DV N L+G IP I + + NQ
Sbjct: 192 VLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISYNQI 251
Query: 287 TGSIQSELGNCK-------------NFKSVLAELQ-IFTFSAGMNQLSGPLPSWLGKWNQ 332
TG I +G + V+ +Q + N+L GP+P LG +
Sbjct: 252 TGEIPYNIGFLQVATLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVGPIPPILGNLSF 311
Query: 333 MESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLS 392
++L+ N G IP E+GN S L Y++L++NKL G+IP EL E L E+NL N L
Sbjct: 312 TGKLYLHGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLV 371
Query: 393 GTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGD 452
G I C L+Q ++ N+L+G IP NL S+ L L+SN F G IP+ LG
Sbjct: 372 GPIPSNISSCAALNQF---NVHGNLLSGSIPLAFRNLGSLTYLNLSSNNFKGKIPVELGH 428
Query: 453 STXXXXXXXXXXXXXXXXPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSY 512
P + DL L L+LS N+LS + ++ N+ +
Sbjct: 429 IINLDKLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLSGQLPAEFG------NLRSI-- 480
Query: 513 SHNYRKFDLSYNMLSGPIPKELG-----SCVVV----LTGYIPRSLGHLSCSVKLNLSGN 563
+ D+S+N+LSG IP ELG + +++ L G IP L + V LN+S N
Sbjct: 481 ----QMIDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTNCFTLVNLNVSFN 536
Query: 564 KLSVLVP 570
LS +VP
Sbjct: 537 NLSGIVP 543
|
|
| TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 4.6e-70, Sum P(2) = 4.6e-70
Identities = 164/529 (31%), Positives = 243/529 (45%)
Query: 90 GLAIANALK-DLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQ-PSP 147
GL ++ L D+ L L + Q + GP+ P + +L +LR LNLS N+ G P
Sbjct: 78 GLNLSGTLSSDVAHLPLLQNLSLAANQ-ISGPIPPQISNLYELRHLNLSNNVFNGSFPDE 136
Query: 148 QVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLD 207
S L L++L L N L+G LP L LT L L L N F+G++P+ G L+ L
Sbjct: 137 LSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLA 196
Query: 208 FSGNGFNGTVPIRLGELTRXXXXXXXXXXXXXXXTVSLFTNLQSLSYLDVSNNLLSGNIP 267
SGN G +P +G LT NL L D +N L+G IP
Sbjct: 197 VSGNELTGKIPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIP 256
Query: 268 PEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFT------FSA------- 314
PEI L+KL +L +N FTG+I ELG + KS+ +FT FS
Sbjct: 257 PEIGKLQKLDTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQLKNLTLL 316
Query: 315 --GMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIP 372
N+L G +P ++G+ ++E + L N F G IP ++G L + LS+NKL+G++P
Sbjct: 317 NLFRNKLYGAIPEFIGEMPELEVLQLWENNFTGSIPQKLGENGRLVILDLSSNKLTGTLP 376
Query: 373 RELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSI 432
+ L+ + GN L G+I D G+C +L+++ + N L G IPKE+ L +
Sbjct: 377 PNMCSGNRLMTLITLGNFLFGSIPDSLGKCESLTRIR---MGENFLNGSIPKELFGLPKL 433
Query: 433 QILKLNSNFFNGSIPMRLGD-STXXXXXXXXXXXXXXXXPEKIADLAQLQFLDLSYNNLS 491
++L N+ G +P+ G S P I +L+ +Q L L N S
Sbjct: 434 SQVELQDNYLTGELPISGGGVSGDLGQISLSNNQLSGSLPAAIGNLSGVQKLLLDGNKFS 493
Query: 492 RPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LT 542
I P++ K D S+N+ SG I E+ C ++ L+
Sbjct: 494 GSIP------------PEIGRLQQLSKLDFSHNLFSGRIAPEISRCKLLTFVDLSRNELS 541
Query: 543 GYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
G IP L + LNLS N L +P + ++ LT++D SYN G
Sbjct: 542 GDIPNELTGMKILNYLNLSRNHLVGSIPVTIASMQSLTSVDFSYNNLSG 590
|
|
| TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 3.6e-69, Sum P(3) = 3.6e-69
Identities = 159/477 (33%), Positives = 228/477 (47%)
Query: 117 LKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVL 176
L+G + L L L L L QN L G+ P V N+ RL++L+L EN +GS+P ++G L
Sbjct: 223 LEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKL 282
Query: 177 TWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRXXXXXXXXXX 236
T ++ L L +N TGE+P E+G++ +DFS N G +P G +
Sbjct: 283 TKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENI 342
Query: 237 XXXXXTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGN 296
L L L LD+S N L+G IP E+ L L D L NQ G I +G
Sbjct: 343 LLGPIPREL-GELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGF 401
Query: 297 CKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSM 356
NF SVL SA N LSGP+P+ ++ + + L +N+ G IP ++ C
Sbjct: 402 YSNF-SVL------DMSA--NSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKS 452
Query: 357 LKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSN 416
L + L +N+L+GS+P EL + ++L + L N LSG I G+ NL E+L L++N
Sbjct: 453 LTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNL---ERLRLANN 509
Query: 417 MLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTXXXXXXXXXXXXXXXXPEKIAD 476
TG IP EIGNL I ++SN G IP LG +++
Sbjct: 510 NFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQ 569
Query: 477 LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNM--LSGPIPKEL 534
L L+ L LS N L+ I HS + + +L N ++ + L+ + L
Sbjct: 570 LVYLEILRLSDNRLTGEI--PHS-FGDLTRLMELQLGGNLLSENIPVELGKLTS-LQISL 625
Query: 535 GSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
L+G IP SLG+L L L+ NKLS +P S GNL L ++S N G
Sbjct: 626 NISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVG 682
|
|
| TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 1.2e-68, Sum P(2) = 1.2e-68
Identities = 162/513 (31%), Positives = 237/513 (46%)
Query: 111 VLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLP 170
V+ +L G +S + D S+L V++LS N L G+ + LK L+ L L N L+G +P
Sbjct: 112 VISNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIP 171
Query: 171 SQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNG-FNGTVPIRLGELTRXXX 229
+LG L+ L + N + +P ELG + L+S+ GN +G +P +G
Sbjct: 172 PELGDCVSLKNLEIFDNYLSENLPLELGKISTLESIRAGGNSELSGKIPEEIGNCRNLKV 231
Query: 230 XXXXXXXXXXXXTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGS 289
VSL L L L V + +LSG IP E+ + +L + +L N +G+
Sbjct: 232 LGLAATKISGSLPVSL-GQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGT 290
Query: 290 IQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPL 349
+ ELG +N + +L N L GP+P +G + ++ L+ N F G IP
Sbjct: 291 LPKELGKLQNLEKMLL---------WQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPK 341
Query: 350 EVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLS--- 406
GN S L+ + LS+N ++GSIP L++ LV+ +D N +SG I G L+
Sbjct: 342 SFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFL 401
Query: 407 ------------------QLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPM 448
L+ LDLS N LTG +P + LR++ L L SN +G IP+
Sbjct: 402 GWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPL 461
Query: 449 RLGDSTXXXXXXXXXXXXXXXXPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIP 508
+G+ T P+ I L L FLDLS NNLS P+ P
Sbjct: 462 EIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPV-------------P 508
Query: 509 -DLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTGYIPRSLGHLSCSVKL 558
++S + +LS N L G +P L S + LTG IP SLGHL +L
Sbjct: 509 LEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRL 568
Query: 559 NLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
LS N + +P+S G+ L LDLS N G
Sbjct: 569 ILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISG 601
|
|
| TAIR|locus:2161158 PXY "PHLOEM INTERCALATED WITH XYLEM" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 2.0e-68, Sum P(3) = 2.0e-68
Identities = 154/508 (30%), Positives = 234/508 (46%)
Query: 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGEN 163
L ++Y L SL+G +FDL+KL L++S+N P +S LK LK+ + N
Sbjct: 104 LSSLLYLNLSGNSLEGSFPTSIFDLTKLTTLDISRNSFDSSFPPGISKLKFLKVFNAFSN 163
Query: 164 QLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGE 223
G LPS + L +LE L+ + F GE+P+ G +++LK + +GN G +P RLG
Sbjct: 164 NFEGLLPSDVSRLRFLEELNFGGSYFEGEIPAAYGGLQRLKFIHLAGNVLGGKLPPRLGL 223
Query: 224 LTRXXXXXXXXXXXXXXXTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGI 283
LT S F L +L Y DVSN LSG++P E+ +L L +L
Sbjct: 224 LTELQHMEIGYNHFNGNIP-SEFALLSNLKYFDVSNCSLSGSLPQELGNLSNLETLFLFQ 282
Query: 284 NQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQF 343
N FTG I N K+ K + FS+ NQLSG +PS + + L +N
Sbjct: 283 NGFTGEIPESYSNLKSLK-------LLDFSS--NQLSGSIPSGFSTLKNLTWLSLISNNL 333
Query: 344 IGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCT 403
G +P +G L + L NN +G +P +L + L +++ N +GTI C
Sbjct: 334 SGEVPEGIGELPELTTLFLWNNNFTGVLPHKLGSNGKLETMDVSNNSFTGTIPSSL--CH 391
Query: 404 NLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTXXXXXXXXX 463
++L KL L SNM G +PK + S+ + +N NG+IP+ G
Sbjct: 392 G-NKLYKLILFSNMFEGELPKSLTRCESLWRFRSQNNRLNGTIPIGFGSLRNLTFVDLSN 450
Query: 464 XXXXXXXPEKIADLAQLQFLDLSYNNLSR---------PILSKHSSYFHEV--NIPDLSY 512
P A LQ+L+LS N R P L S+ F + IP+
Sbjct: 451 NRFTDQIPADFATAPVLQYLNLSTNFFHRKLPENIWKAPNLQIFSASFSNLIGEIPNYVG 510
Query: 513 SHNYRKFDLSYNMLSGPIPKELGSCVVVL---------TGYIPRSLGHLSCSVKLNLSGN 563
++ + +L N L+G IP ++G C +L G IP + L ++LS N
Sbjct: 511 CKSFYRIELQGNSLNGTIPWDIGHCEKLLCLNLSQNHLNGIIPWEISTLPSIADVDLSHN 570
Query: 564 KLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
L+ +P+ FG+ +T ++SYN+ G
Sbjct: 571 LLTGTIPSDFGSSKTITTFNVSYNQLIG 598
|
|
| UNIPROTKB|Q8RZV7 P0413C03.22 "Putative extra sporogenous cells" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 6.6e-68, Sum P(3) = 6.6e-68
Identities = 156/523 (29%), Positives = 228/523 (43%)
Query: 90 GLAIANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQV 149
G + L + L + Y L L GP+ L++L L+ + L N L GQ SP +
Sbjct: 98 GCGFSGELPEALGNLQNLQYLDLSNNELTGPIPISLYNLKMLKEMVLDYNSLSGQLSPAI 157
Query: 150 SNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209
+ L+ L LS+ N +SGSLP LG L LE L + N+F G +P+ G++ L D S
Sbjct: 158 AQLQHLTKLSISMNSISGSLPPDLGSLKNLELLDIKMNTFNGSIPATFGNLSCLLHFDAS 217
Query: 210 GNGFNGTVPIRLGELTRXXXXXXXXXXXXXXXTVSLFTNLQSLSYLDVSNNLLSGNIPPE 269
N G++ + LT + L++L L + N L+G IP E
Sbjct: 218 QNNLTGSIFPGITSLTNLLTLDLSSNSFEGTIPREI-GQLENLELLILGKNDLTGRIPQE 276
Query: 270 ISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGK 329
I LK+L +L QFTG I + S L EL I N LPS +G+
Sbjct: 277 IGSLKQLKLLHLEECQFTGKIPWSISGL----SSLTELDISD-----NNFDAELPSSMGE 327
Query: 330 WNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGN 389
+ + N G +P E+GNC L I LS N L G IP E D E++V ++GN
Sbjct: 328 LGNLTQLIAKNAGLSGNMPKELGNCKKLTVINLSFNALIGPIPEEFADLEAIVSFFVEGN 387
Query: 390 MLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMR 449
LSG + D + N + L N +G +P + L+ + SN +GSIP
Sbjct: 388 KLSGRVPDWIQKWKNARSIR---LGQNKFSGPLP--VLPLQHLLSFAAESNLLSGSIPSH 442
Query: 450 LGDSTXXXXXXXXXXXXXXXXPEKIADLAQLQFLDLSYNNL---------SRPILSKHSS 500
+ + E L L+L N++ P+++ S
Sbjct: 443 ICQANSLHSLLLHHNNLTGTIDEAFKGCTNLTELNLLDNHIHGEVPGYLAELPLVTLELS 502
Query: 501 Y--FHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTGYIPRSL 549
F + +L S + LS N ++GPIP+ +G V+ L G IP+S+
Sbjct: 503 QNKFAGMLPAELWESKTLLEISLSNNEITGPIPESIGKLSVLQRLHIDNNLLEGPIPQSV 562
Query: 550 GHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592
G L L+L GN+LS ++P + N L LDLSYN GN
Sbjct: 563 GDLRNLTNLSLRGNRLSGIIPLALFNCRKLATLDLSYNNLTGN 605
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.11 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 729 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-67 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-58 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-56 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-47 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-17 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-14 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-14 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-13 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-09 | |
| pfam00069 | 260 | pfam00069, Pkinase, Protein kinase domain | 3e-09 | |
| cd00180 | 215 | cd00180, PKc, Catalytic domain of Protein Kinases | 7e-09 | |
| smart00220 | 254 | smart00220, S_TKc, Serine/Threonine protein kinase | 1e-08 | |
| cd05071 | 262 | cd05071, PTKc_Src, Catalytic domain of the Protein | 4e-08 | |
| cd05069 | 260 | cd05069, PTKc_Yes, Catalytic domain of the Protein | 8e-08 | |
| cd05148 | 261 | cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro | 1e-07 | |
| cd05070 | 260 | cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro | 1e-07 | |
| cd08219 | 255 | cd08219, STKc_Nek3, Catalytic domain of the Protei | 2e-07 | |
| smart00219 | 257 | smart00219, TyrKc, Tyrosine kinase, catalytic doma | 4e-07 | |
| cd05058 | 262 | cd05058, PTKc_Met_Ron, Catalytic domain of the Pro | 4e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 4e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-06 | |
| cd07840 | 287 | cd07840, STKc_CDK9_like, Catalytic domain of Cycli | 1e-06 | |
| cd05122 | 253 | cd05122, PKc_STE, Catalytic domain of STE family P | 1e-06 | |
| smart00221 | 258 | smart00221, STYKc, Protein kinase; unclassified sp | 1e-06 | |
| cd08529 | 256 | cd08529, STKc_FA2-like, Catalytic domain of the Pr | 1e-06 | |
| cd08217 | 265 | cd08217, STKc_Nek2, Catalytic domain of the Protei | 3e-06 | |
| cd07856 | 328 | cd07856, STKc_Sty1_Hog1, Catalytic domain of the S | 5e-06 | |
| cd05068 | 261 | cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re | 5e-06 | |
| cd00192 | 262 | cd00192, PTKc, Catalytic domain of Protein Tyrosin | 5e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 6e-06 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 7e-06 | |
| cd05039 | 256 | cd05039, PTKc_Csk_like, Catalytic domain of C-term | 7e-06 | |
| cd08215 | 258 | cd08215, STKc_Nek, Catalytic domain of the Protein | 8e-06 | |
| cd05072 | 261 | cd05072, PTKc_Lyn, Catalytic domain of the Protein | 8e-06 | |
| cd05034 | 261 | cd05034, PTKc_Src_like, Catalytic domain of Src ki | 8e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-05 | |
| cd05578 | 258 | cd05578, STKc_Yank1, Catalytic domain of the Prote | 1e-05 | |
| cd07834 | 330 | cd07834, STKc_MAPK, Catalytic domain of the Serine | 1e-05 | |
| cd08221 | 256 | cd08221, STKc_Nek9, Catalytic domain of the Protei | 1e-05 | |
| cd05059 | 256 | cd05059, PTKc_Tec_like, Catalytic domain of Tec-li | 1e-05 | |
| cd08225 | 257 | cd08225, STKc_Nek5, Catalytic domain of the Protei | 1e-05 | |
| cd05581 | 280 | cd05581, STKc_PDK1, Catalytic domain of the Protei | 1e-05 | |
| cd05063 | 268 | cd05063, PTKc_EphR_A2, Catalytic domain of the Pro | 2e-05 | |
| cd05067 | 260 | cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro | 2e-05 | |
| PTZ00283 | 496 | PTZ00283, PTZ00283, serine/threonine protein kinas | 2e-05 | |
| cd07864 | 302 | cd07864, STKc_CDK12, Catalytic domain of the Serin | 2e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-05 | |
| cd06623 | 264 | cd06623, PKc_MAPKK_plant_like, Catalytic domain of | 3e-05 | |
| cd05082 | 256 | cd05082, PTKc_Csk, Catalytic domain of the Protein | 3e-05 | |
| cd07841 | 298 | cd07841, STKc_CDK7, Catalytic domain of the Serine | 4e-05 | |
| cd06610 | 267 | cd06610, STKc_OSR1_SPAK, Catalytic domain of the P | 4e-05 | |
| cd07858 | 337 | cd07858, STKc_TEY_MAPK_plant, Catalytic domain of | 4e-05 | |
| cd05073 | 260 | cd05073, PTKc_Hck, Catalytic domain of the Protein | 5e-05 | |
| cd06642 | 277 | cd06642, STKc_STK25-YSK1, Catalytic domain of the | 5e-05 | |
| cd05066 | 267 | cd05066, PTKc_EphR_A, Catalytic domain of the Prot | 6e-05 | |
| cd06640 | 277 | cd06640, STKc_MST4, Catalytic domain of the Protei | 7e-05 | |
| cd06618 | 296 | cd06618, PKc_MKK7, Catalytic domain of the dual-sp | 9e-05 | |
| cd06606 | 260 | cd06606, STKc_MAPKKK, Catalytic domain of the Prot | 1e-04 | |
| cd05619 | 316 | cd05619, STKc_nPKC_theta, Catalytic domain of the | 1e-04 | |
| cd05090 | 283 | cd05090, PTKc_Ror1, Catalytic domain of the Protei | 1e-04 | |
| cd05092 | 280 | cd05092, PTKc_TrkA, Catalytic domain of the Protei | 1e-04 | |
| cd05033 | 266 | cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec | 1e-04 | |
| cd07851 | 343 | cd07851, STKc_p38, Catalytic domain of the Serine/ | 1e-04 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-04 | |
| cd05083 | 254 | cd05083, PTKc_Chk, Catalytic domain of the Protein | 2e-04 | |
| cd05113 | 256 | cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro | 2e-04 | |
| cd06614 | 286 | cd06614, STKc_PAK, Catalytic domain of the Protein | 2e-04 | |
| cd07876 | 359 | cd07876, STKc_JNK2, Catalytic domain of the Serine | 2e-04 | |
| cd06635 | 317 | cd06635, STKc_TAO1, Catalytic domain of the Protei | 2e-04 | |
| COG0515 | 384 | COG0515, SPS1, Serine/threonine protein kinase [Ge | 2e-04 | |
| cd06607 | 307 | cd06607, STKc_TAO, Catalytic domain of the Protein | 2e-04 | |
| cd07852 | 337 | cd07852, STKc_MAPK15, Catalytic domain of the Seri | 3e-04 | |
| cd07849 | 336 | cd07849, STKc_ERK1_2_like, Catalytic domain of Ext | 3e-04 | |
| cd05592 | 316 | cd05592, STKc_nPKC_theta_delta, Catalytic domain o | 3e-04 | |
| cd05123 | 250 | cd05123, STKc_AGC, Catalytic domain of AGC family | 3e-04 | |
| pfam07714 | 258 | pfam07714, Pkinase_Tyr, Protein tyrosine kinase | 3e-04 | |
| cd06641 | 277 | cd06641, STKc_MST3, Catalytic domain of the Protei | 3e-04 | |
| cd05075 | 272 | cd05075, PTKc_Axl, Catalytic domain of the Protein | 3e-04 | |
| cd08220 | 256 | cd08220, STKc_Nek8, Catalytic domain of the Protei | 3e-04 | |
| cd05114 | 256 | cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro | 3e-04 | |
| cd06633 | 313 | cd06633, STKc_TAO3, Catalytic domain of the Protei | 3e-04 | |
| cd06612 | 256 | cd06612, STKc_MST1_2, Catalytic domain of the Prot | 4e-04 | |
| cd05038 | 284 | cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai | 4e-04 | |
| cd05048 | 283 | cd05048, PTKc_Ror, Catalytic Domain of the Protein | 5e-04 | |
| cd07832 | 286 | cd07832, STKc_CCRK, Catalytic domain of the Serine | 5e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 6e-04 | |
| cd05065 | 269 | cd05065, PTKc_EphR_B, Catalytic domain of the Prot | 6e-04 | |
| cd08218 | 256 | cd08218, STKc_Nek1, Catalytic domain of the Protei | 6e-04 | |
| cd05052 | 263 | cd05052, PTKc_Abl, Catalytic domain of the Protein | 7e-04 | |
| cd06617 | 283 | cd06617, PKc_MKK3_6, Catalytic domain of the dual- | 7e-04 | |
| cd06649 | 331 | cd06649, PKc_MEK2, Catalytic domain of the dual-sp | 7e-04 | |
| cd07855 | 334 | cd07855, STKc_ERK5, Catalytic domain of the Serine | 7e-04 | |
| PTZ00267 | 478 | PTZ00267, PTZ00267, NIMA-related protein kinase; P | 7e-04 | |
| cd07857 | 332 | cd07857, STKc_MPK1, Catalytic domain of the Serine | 9e-04 | |
| cd06620 | 284 | cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of | 9e-04 | |
| cd06615 | 308 | cd06615, PKc_MEK, Catalytic domain of the dual-spe | 0.001 | |
| cd06609 | 274 | cd06609, STKc_MST3_like, Catalytic domain of Mamma | 0.001 | |
| cd06650 | 333 | cd06650, PKc_MEK1, Catalytic domain of the dual-sp | 0.001 | |
| PLN00034 | 353 | PLN00034, PLN00034, mitogen-activated protein kina | 0.001 | |
| cd05056 | 270 | cd05056, PTKc_FAK, Catalytic domain of the Protein | 0.002 | |
| cd05111 | 279 | cd05111, PTK_HER3, Pseudokinase domain of the Prot | 0.002 | |
| cd06917 | 277 | cd06917, STKc_NAK1_like, Catalytic domain of Funga | 0.002 | |
| cd06643 | 282 | cd06643, STKc_SLK, Catalytic domain of the Protein | 0.002 | |
| cd05110 | 303 | cd05110, PTKc_HER4, Catalytic domain of the Protei | 0.002 | |
| cd05098 | 307 | cd05098, PTKc_FGFR1, Catalytic domain of the Prote | 0.002 | |
| cd05093 | 288 | cd05093, PTKc_TrkB, Catalytic domain of the Protei | 0.002 | |
| cd05032 | 277 | cd05032, PTKc_InsR_like, Catalytic domain of Insul | 0.002 | |
| cd06613 | 262 | cd06613, STKc_MAP4K3_like, Catalytic domain of Mit | 0.002 | |
| cd06634 | 308 | cd06634, STKc_TAO2, Catalytic domain of the Protei | 0.002 | |
| cd08528 | 269 | cd08528, STKc_Nek10, Catalytic domain of the Prote | 0.002 | |
| cd05112 | 256 | cd05112, PTKc_Itk, Catalytic domain of the Protein | 0.002 | |
| cd05100 | 334 | cd05100, PTKc_FGFR3, Catalytic domain of the Prote | 0.003 | |
| cd07877 | 345 | cd07877, STKc_p38alpha_MAPK14, Catalytic domain of | 0.003 | |
| cd05053 | 293 | cd05053, PTKc_FGFR, Catalytic domain of the Protei | 0.003 | |
| cd05080 | 283 | cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma | 0.003 | |
| cd06605 | 265 | cd06605, PKc_MAPKK, Catalytic domain of the dual-s | 0.003 | |
| cd05103 | 343 | cd05103, PTKc_VEGFR2, Catalytic domain of the Prot | 0.003 | |
| cd05049 | 280 | cd05049, PTKc_Trk, Catalytic domain of the Protein | 0.003 | |
| cd05094 | 291 | cd05094, PTKc_TrkC, Catalytic domain of the Protei | 0.004 | |
| cd06627 | 254 | cd06627, STKc_Cdc7_like, Catalytic domain of Cell | 0.004 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 239 bits (611), Expect = 2e-67
Identities = 174/509 (34%), Positives = 251/509 (49%), Gaps = 40/509 (7%)
Query: 106 RVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNL-KRLKMLSLGENQ 164
RVV L +++ G +S +F L ++ +NLS N L G + L+ L+L N
Sbjct: 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129
Query: 165 LSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGEL 224
+GS+P G + LETL L +N +GE+P+++G LK LD GN G +P L L
Sbjct: 130 FTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187
Query: 225 TRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGIN 284
T L+ L L+ N L G + L ++SL ++ + N LSG IP EI L L+ L N
Sbjct: 188 TSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246
Query: 285 QFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFI 344
TG I S LGN KN + +F + N+LSGP+P + ++ S+ L++N
Sbjct: 247 NLTGPIPSSLGNLKNLQ------YLFLYQ---NKLSGPIPPSIFSLQKLISLDLSDNSLS 297
Query: 345 GRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTN 404
G IP V L+ + L +N +G IP L L + L N SG I G+ N
Sbjct: 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357
Query: 405 LSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNN 464
L+ LDLS+N LTG IP+ + + ++ L L SN G IP LG SL + L +N
Sbjct: 358 LTV---LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414
Query: 465 NLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKH-------------SSYFHEVNIPDLS 511
+ +G +P + L + FLD+S NNL I S+ + +F +PD
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG--LPDSF 472
Query: 512 YSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTGYIPRSLGHLSCSVKLNLSG 562
S DLS N SG +P++LGS + L+G IP L V L+LS
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532
Query: 563 NKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
N+LS +P SF + L+ LDLS N+ G
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSG 561
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (540), Expect = 6e-58
Identities = 146/419 (34%), Positives = 215/419 (51%), Gaps = 26/419 (6%)
Query: 117 LKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVL 176
L G + L +L+ L L L+ N L GQ ++ +K LK + LG N LSG +P ++G L
Sbjct: 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235
Query: 177 TWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNL 236
T L L L N+ TG +PS LG++K L+ L N +G +P + L +L LDLSDN
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295
Query: 237 LSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGN 296
LSG + L LQ+L L + +N +G IP ++ L +L L N+F+G I LG
Sbjct: 296 LSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354
Query: 297 CKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSM 356
N +VL N L+G +P L + + L +N G IP +G C
Sbjct: 355 HNNL-TVL--------DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405
Query: 357 LKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSN 416
L+ +RL +N SG +P E + +++ N L G I R ++ L+ L L+ N
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS---RKWDMPSLQMLSLARN 462
Query: 417 MLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIAD 476
G +P G+ R ++ L L+ N F+G++P +LG + L L+L N L+G IP++++
Sbjct: 463 KFFGGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521
Query: 477 LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELG 535
+L LDLS+N LS I + S P LS + DLS N LSG IPK LG
Sbjct: 522 CKKLVSLDLSHNQLSGQIPASFSEM------PVLS------QLDLSQNQLSGEIPKNLG 568
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (527), Expect = 4e-56
Identities = 149/454 (32%), Positives = 221/454 (48%), Gaps = 42/454 (9%)
Query: 150 SNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDM-KQLKSLDF 208
+N R+ + L +SG + S + L +++T++L +N +G +P ++ L+ L+
Sbjct: 66 NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125
Query: 209 SGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSL--TVSLFTNLQSLSYLDVSNNLLSGNI 266
S N F G++P G + L+ LDLS+N+LSG + + F++L+ LD+ N+L G I
Sbjct: 126 SNNNFTGSIP--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK---VLDLGGNVLVGKI 180
Query: 267 PPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSW 326
P +++L L L NQ G I ELG K+ K + G N LSG +P
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY---------LGYNNLSGEIPYE 231
Query: 327 LGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINL 386
+G + + L N G IP +GN L+Y+ L NKLSG IP + + L+ ++L
Sbjct: 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291
Query: 387 DGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSI 446
N LSG I ++ L LE L L SN TG+IP + +L +Q+L+L SN F+G I
Sbjct: 292 SDNSLSGEIPELV---IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348
Query: 447 PMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVN 506
P LG +L +L+L NNL G IPE + L L L N+L I
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI------------ 396
Query: 507 IPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTGYIPRSLGHLSCSVK 557
L + R+ L N SG +P E +V L G I +
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456
Query: 558 LNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
L+L+ NK +P SFG+ L NLDLS N+F G
Sbjct: 457 LSLARNKFFGGLPDSFGSKR-LENLDLSRNQFSG 489
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (457), Expect = 4e-47
Identities = 124/349 (35%), Positives = 184/349 (52%), Gaps = 24/349 (6%)
Query: 116 SLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV 175
+L GP+ L +L L+ L L QN L G P + +L++L L L +N LSG +P +
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306
Query: 176 LTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDN 235
L LE L L SN+FTG++P L + +L+ L N F+G +P LG+ L LDLS N
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366
Query: 236 LLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSE-- 293
L+G + L + +L L + +N L G IP + + L L N F+G + SE
Sbjct: 367 NLTGEIPEGL-CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT 425
Query: 294 ---------------LGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWL 338
G + K + LQ+ + + N+ G LP G ++E++ L
Sbjct: 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA--RNKFFGGLPDSFGS-KRLENLDL 482
Query: 339 NNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDV 398
+ NQF G +P ++G+ S L ++LS NKLSG IP EL+ + LV ++L N LSG I
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542
Query: 399 FGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIP 447
F LSQ LDLS N L+G IPK +GN+ S+ + ++ N +GS+P
Sbjct: 543 FSEMPVLSQ---LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 1e-17
Identities = 68/200 (34%), Positives = 93/200 (46%), Gaps = 24/200 (12%)
Query: 402 CTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRL-GDSTSLNILE 460
C N S++ +DLS ++G+I I L IQ + L++N +G IP + S+SL L
Sbjct: 65 CNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124
Query: 461 LGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFD 520
L NNN GSIP + L+ LDLS N LS I + S+ + + D
Sbjct: 125 LSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFS------------SLKVLD 170
Query: 521 LSYNMLSGPIPKELGSCVVV---------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPT 571
L N+L G IP L + + L G IPR LG + + L N LS +P
Sbjct: 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230
Query: 572 SFGNLNGLTNLDLSYNEFDG 591
G L L +LDL YN G
Sbjct: 231 EIGGLTSLNHLDLVYNNLTG 250
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 6e-14
Identities = 37/103 (35%), Positives = 59/103 (57%)
Query: 158 LSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTV 217
L L L G +P+ + L L++++L NS G +P LG + L+ LD S N FNG++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 218 PIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNN 260
P LG+LT L+ L+L+ N LSG + +L L + + ++N
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 9e-14
Identities = 36/81 (44%), Positives = 50/81 (61%)
Query: 411 LDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSI 470
L L + L G IP +I LR +Q + L+ N G+IP LG TSL +L+L N+ NGSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 471 PEKIADLAQLQFLDLSYNNLS 491
PE + L L+ L+L+ N+LS
Sbjct: 483 PESLGQLTSLRILNLNGNSLS 503
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 2e-13
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 384 INLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFN 443
+ LD L G I + + L L+ ++LS N + G IP +G++ S+++L L+ N FN
Sbjct: 423 LGLDNQGLRGFIPNDISK---LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 444 GSIPMRLGDSTSLNILELGNNNLNGSIP 471
GSIP LG TSL IL L N+L+G +P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 4e-13
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 362 LSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGR 421
L N L G IP +++ L INL GN + G I G +++ LE LDLS N G
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG---SITSLEVLDLSYNSFNGS 481
Query: 422 IPKEIGNLRSIQILKLNSNFFNGSIPMRLG 451
IP+ +G L S++IL LN N +G +P LG
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 112 LRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPS 171
L Q L+G + + L L+ +NLS N + G P + ++ L++L L N +GS+P
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484
Query: 172 QLGVLTWLETLSLCSNSFTGEMPSELG 198
LG LT L L+L NS +G +P+ LG
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 34/89 (38%), Positives = 49/89 (55%)
Query: 134 LNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEM 193
L L L G +S L+ L+ ++L N + G++P LG +T LE L L NSF G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 194 PSELGDMKQLKSLDFSGNGFNGTVPIRLG 222
P LG + L+ L+ +GN +G VP LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 317 NQ-LSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPREL 375
NQ L G +P+ + K ++S+ L+ N G IP +G+ + L+ + LS N +GSIP L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486
Query: 376 NDSESLVEINLDGNMLSGTIEDVFG 400
SL +NL+GN LSG + G
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE-YGRARKANERDN 683
D+K NILL+E+ K+ DFGLA+ + S T Y+ PE + +
Sbjct: 123 DLKPENILLDENGVVKIADFGLAKKLL-KSSSSLTTFVGTPWYMAPEVLLGGNGYGPKVD 181
Query: 684 IYRFGVVLLELVIRKQP 700
++ GV+L EL+ K P
Sbjct: 182 VWSLGVILYELLTGKPP 198
|
Length = 260 |
| >gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 7e-09
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 13/97 (13%)
Query: 625 DIKASNILLNEDFD-AKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR-KANERD 682
D+K NILL+ D K+ DFGL++L++ KS + T V + +Y+ PE + +E+
Sbjct: 117 DLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGT-PAYMAPEVLLGKGYYSEKS 175
Query: 683 NIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNP 719
+I+ GV+L EL P+ KD++ + +P
Sbjct: 176 DIWSLGVILYEL--------PEL--KDLIRKMLQKDP 202
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215 |
| >gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+K NILL+ED K+ DFGLAR + ++T V + Y+ PE + + +I
Sbjct: 122 DLKPENILLDEDGHVKLADFGLARQLDP-GEKLTTFVGT-PEYMAPEVLLGKGYGKAVDI 179
Query: 685 YRFGVVLLELVIRKQPTGPKFEDKD 709
+ GV+L EL+ K P F D
Sbjct: 180 WSLGVILYELLTGKPP----FPGDD 200
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254 |
| >gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 4e-08
Identities = 27/90 (30%), Positives = 49/90 (54%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
V +D++A+NIL+ E+ KV DFGLARLI D + I + PE + +
Sbjct: 124 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 183
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKDIV 711
+++ FG++L EL + + P +++++
Sbjct: 184 SDVWSFGILLTELTTKGRVPYPGMVNREVL 213
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262 |
| >gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 8e-08
Identities = 25/90 (27%), Positives = 50/90 (55%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D++A+NIL+ ++ K+ DFGLARLI D + I + PE + +
Sbjct: 124 IHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 183
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKDIV 711
+++ FG++L ELV + + P +++++
Sbjct: 184 SDVWSFGILLTELVTKGRVPYPGMVNREVL 213
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260 |
| >gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+ A NIL+ ED KV DFGLARLI + ++S+D + PE + +
Sbjct: 126 IHRDLAARNILVGEDLVCKVADFGLARLIKE-DVYLSSDKKIPYKWTAPEAASHGTFSTK 184
Query: 682 DNIYRFGVVLLELVIRKQ 699
+++ FG++L E+ Q
Sbjct: 185 SDVWSFGILLYEMFTYGQ 202
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261 |
| >gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 1e-07
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D++++NIL+ + K+ DFGLARLI D + I + PE + +
Sbjct: 124 IHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 183
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKDIV--------VGCVSDNPIA 721
+++ FG++L ELV + + P +++++ + C D PI+
Sbjct: 184 SDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYRMPCPQDCPIS 231
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260 |
| >gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDN 683
+DIK+ NI L ++ K+ DFG ARL++ ++ T V + YVPPE N + +
Sbjct: 124 RDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPY-YVPPEIWENMPYNNKSD 182
Query: 684 IYRFGVVLLELVIRKQP 700
I+ G +L EL K P
Sbjct: 183 IWSLGCILYELCTLKHP 199
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255 |
| >gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 4e-07
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+ A N L+ E+ K+ DFGL+R + D + I ++ PE + K +
Sbjct: 124 IHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIRWMAPESLKEGKFTSK 183
Query: 682 DNIYRFGVVLLEL 694
+++ FGV+L E+
Sbjct: 184 SDVWSFGVLLWEI 196
|
Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257 |
| >gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISD---CKSHISTDVASAISYVPPEYGRARKA 678
V +D+ A N +L+E F KV DFGLAR I D H T + ++ E + +K
Sbjct: 120 VHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKF 179
Query: 679 NERDNIYRFGVVLLELVIRKQPTGPKFEDKDIVV 712
+ +++ FGV+L EL+ R P P + DI V
Sbjct: 180 TTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITV 213
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 64/258 (24%), Positives = 113/258 (43%), Gaps = 16/258 (6%)
Query: 242 TVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFK 301
L NL S + L + ++L +S S + S N +
Sbjct: 47 VNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLR 106
Query: 302 SVLAELQIFTFSAGM----NQLSGPLPSWLGK-WNQMESVWLNNNQFIGRIPLEVGNCSM 356
S ++EL T + N ++ +P +G + ++ + L++N+ I +P + N
Sbjct: 107 SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPN 164
Query: 357 LKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSN 416
LK + LS N LS +P+ L++ +L ++L GN I D+ LS LE+LDLS+N
Sbjct: 165 LKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGN----KISDLPPEIELLSALEELDLSNN 219
Query: 417 MLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIAD 476
+ + + NL+++ L+L++N N+ L +N S +
Sbjct: 220 SII-ELLSSLSNLKNLSGLELSNNKLEDLP---ESIGNLSNLETLDLSNNQISSISSLGS 275
Query: 477 LAQLQFLDLSYNNLSRPI 494
L L+ LDLS N+LS +
Sbjct: 276 LTNLRELDLSGNSLSNAL 293
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 40/117 (34%), Positives = 51/117 (43%), Gaps = 29/117 (24%)
Query: 459 LELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIP-DLSYSHNYR 517
L L N L G IP I+ L LQ ++LS N++ NIP L +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSI-------------RGNIPPSLGSITSLE 469
Query: 518 KFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFG 574
DLSYN +G IP+ SLG L+ LNL+GN LS VP + G
Sbjct: 470 VLDLSYNSFNGSIPE---------------SLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 9e-07
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 541 LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
L G+IP + L +NLSGN + +P S G++ L LDLSYN F+G
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 68/261 (26%), Positives = 119/261 (45%), Gaps = 18/261 (6%)
Query: 331 NQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNM 390
+ + LN + + + + + + S L + L ++L+ N
Sbjct: 45 VAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNR 104
Query: 391 LSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRS-IQILKLNSNFFNGSIPMR 449
L I L+ L LDL +N +T IP IG L+S ++ L L+ N S+P
Sbjct: 105 LRSNI----SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSP 158
Query: 450 LGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSR-PILSKHSSYFHEVNIP 508
L + +L L+L N+L+ +P+ +++L+ L LDLS N +S P + S E+++
Sbjct: 159 LRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDL- 216
Query: 509 DLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVL 568
+++ + S + L EL + +P S+G+LS L+LS N++S +
Sbjct: 217 ---SNNSIIELLSSLSNLKNLSGLELSN---NKLEDLPESIGNLSNLETLDLSNNQISSI 270
Query: 569 VPTSFGNLNGLTNLDLSYNEF 589
+S G+L L LDLS N
Sbjct: 271 --SSLGSLTNLRELDLSGNSL 289
|
Length = 394 |
| >gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE-------YGRARK 677
DIK SNIL+N D K+ DFGLAR + S T+ + Y PPE YG
Sbjct: 125 DIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEV- 183
Query: 678 ANERDNIYRFGVVLLELVIRK 698
+++ G +L EL + K
Sbjct: 184 -----DMWSVGCILAELFLGK 199
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287 |
| >gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
DIKA+NILL D + K++DFGL+ +SD K+ + V + ++ PE + + + +I
Sbjct: 123 DIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTM-VGTP-YWMAPEVINGKPYDYKADI 180
Query: 685 YRFGVVLLELVIRKQP 700
+ G+ +EL K P
Sbjct: 181 WSLGITAIELAEGKPP 196
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253 |
| >gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+ A N L+ E+ K+ DFGL+R + D + I ++ PE + K +
Sbjct: 125 IHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIRWMAPESLKEGKFTSK 184
Query: 682 DNIYRFGVVLLEL 694
+++ FGV+L E+
Sbjct: 185 SDVWSFGVLLWEI 197
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258 |
| >gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +DIK+ N+ L+ + K+ D G+A+L+SD + +T V + Y+ PE + NE+
Sbjct: 123 LHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPY-YLSPELCEDKPYNEK 181
Query: 682 DNIYRFGVVLLELVIRKQP 700
+++ GVVL E K P
Sbjct: 182 SDVWALGVVLYECCTGKHP 200
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256 |
| >gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 616 DGKTVAVKKDIKASNILLNEDFDAKVLDFGLARLI----SDCKSHISTDVASAISYVPPE 671
D + +D+K +NI L+ + + K+ DFGLA+++ S K+++ T Y+ PE
Sbjct: 126 DPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPY-----YMSPE 180
Query: 672 YGRARKANERDNIYRFGVVLLELVIRKQP 700
+E+ +I+ G ++ EL P
Sbjct: 181 QLNHMSYDEKSDIWSLGCLIYELCALSPP 209
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265 |
| >gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 21/97 (21%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA------ 675
V +D+K SNIL+NE+ D K+ DFGLAR I D ++ YV Y RA
Sbjct: 130 VHRDLKPSNILINENCDLKICDFGLAR-IQD--PQMT-------GYVSTRYYRAPEIMLT 179
Query: 676 -RKANERDNIYRFGVVLLELVIRKQPTGPKFEDKDIV 711
+K + +I+ G + E++ K P F KD V
Sbjct: 180 WQKYDVEVDIWSAGCIFAEMLEGK----PLFPGKDHV 212
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328 |
| >gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 5e-06
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+ A N+L+ E+ KV DFGLAR+I + I + PE + + +
Sbjct: 125 IHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIK 184
Query: 682 DNIYRFGVVLLELV 695
+++ FG++L E+V
Sbjct: 185 SDVWSFGILLTEIV 198
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261 |
| >gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHIS-TDVASAISYVPPEYGRARKANE 680
V +D+ A N L+ ED K+ DFGL+R + D + T I ++ PE +
Sbjct: 127 VHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTS 186
Query: 681 RDNIYRFGVVLLELV 695
+ +++ FGV+L E+
Sbjct: 187 KSDVWSFGVLLWEIF 201
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 7/147 (4%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184
L +L L+ L+LS N L +SNL L L L N++S LP ++ +L+ LE L L
Sbjct: 159 LRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL 216
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVS 244
SN+ E+ S L ++K L L+ S N +P +G L+ L+ LDLS+N +S ++S
Sbjct: 217 -SNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS---SIS 271
Query: 245 LFTNLQSLSYLDVSNNLLSGNIPPEIS 271
+L +L LD+S N LS +P
Sbjct: 272 SLGSLTNLRELDLSGNSLSNALPLIAL 298
|
Length = 394 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 57/248 (22%), Positives = 91/248 (36%), Gaps = 42/248 (16%)
Query: 343 FIGRIPLEVG-------NCSMLKYIRLSNNKLSGSIPRELND---SESLVEINLDGNMLS 392
GRIP + L+ + LS+N L L S SL E+ L+ N L
Sbjct: 62 ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121
Query: 393 GTIEDVFGR--CTNLSQLEKLDLSSNMLTGRIPKEIGNL----RSIQILKLNSNFFNGSI 446
+ + LEKL L N L G + + R ++ L L +N +
Sbjct: 122 DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181
Query: 447 PMRLG----DSTSLNILELGNNNLN----GSIPEKIADLAQLQFLDLSYNNLSRPILSKH 498
L + +L +L+L NN L ++ E +A L L+ L+L NNL+ +
Sbjct: 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241
Query: 499 SSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKL 558
+S LS + + LS N ++ L + ++L
Sbjct: 242 ASAL-------LSPNISLLTLSLSCNDIT-------DDGAKDLAEVLAEK----ESLLEL 283
Query: 559 NLSGNKLS 566
+L GNK
Sbjct: 284 DLRGNKFG 291
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
V +D+ A N+L++ED AKV DFGLA+ + S + + + PE R +K + +
Sbjct: 124 VHRDLAARNVLVSEDLVAKVSDFGLAK--EASQGQDSGKL--PVKWTAPEALREKKFSTK 179
Query: 682 DNIYRFGVVLLEL 694
+++ FG++L E+
Sbjct: 180 SDVWSFGILLWEI 192
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256 |
| >gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 8e-06
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAI----SYVPPEYGRARKANE 680
DIK NI L + K+ DFG+++++S + D+A + Y+ PE + + N
Sbjct: 128 DIKPQNIFLTSNGLVKLGDFGISKVLSS-----TVDLAKTVVGTPYYLSPELCQNKPYNY 182
Query: 681 RDNIYRFGVVLLEL 694
+ +I+ G VL EL
Sbjct: 183 KSDIWSLGCVLYEL 196
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258 |
| >gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 8e-06
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D++A+N+L++E K+ DFGLAR+I D + I + PE +
Sbjct: 125 IHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIK 184
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKDIVV 712
+++ FG++L E+V + P + D++
Sbjct: 185 SDVWSFGILLYEIVTYGKIPYPGMSNSDVMS 215
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261 |
| >gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+ A NIL+ E+ K+ DFGLARLI D + I + PE + +
Sbjct: 125 IHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIK 184
Query: 682 DNIYRFGVVLLELV 695
+++ FG++L E+V
Sbjct: 185 SDVWSFGILLTEIV 198
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 56/193 (29%), Positives = 79/193 (40%), Gaps = 15/193 (7%)
Query: 95 NALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKR 154
L +L L L + L G + L+ L+LS N + + NL
Sbjct: 113 LELTNLTSLDLDNN-NITDIPPLIGLLKS------NLKELDLSDNKI-ESLPSPLRNLPN 164
Query: 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFN 214
LK L L N LS LP L L+ L L L N + ++P E+ + L+ LD S N
Sbjct: 165 LKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII 222
Query: 215 GTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLK 274
+ L L L L+LS+N L NL +L LD+SNN +S + L
Sbjct: 223 -ELLSSLSNLKNLSGLELSNNKLE--DLPESIGNLSNLETLDLSNNQIS--SISSLGSLT 277
Query: 275 KLSDHYLGINQFT 287
L + L N +
Sbjct: 278 NLRELDLSGNSLS 290
|
Length = 394 |
| >gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +DIK NILL+E + DF +A ++ ++T + Y+ PE + +
Sbjct: 122 IHRDIKPDNILLDEQGHVHITDFNIATKVTP--DTLTTSTSGTPGYMAPEVLCRQGYSVA 179
Query: 682 DNIYRFGVVLLELVIRKQP 700
+ + GV E + K+P
Sbjct: 180 VDWWSLGVTAYECLRGKRP 198
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258 |
| >gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLI 650
D+K SNIL+N + D K+ DFGLAR +
Sbjct: 128 DLKPSNILVNSNCDLKICDFGLARGV 153
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330 |
| >gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDN 683
+DIK NI L + K+ DFG+++++ S T V + Y+ PE + K N + +
Sbjct: 125 RDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPY-YMSPELCQGVKYNFKSD 183
Query: 684 IYRFGVVLLELVIRKQ 699
I+ G VL EL+ K+
Sbjct: 184 IWALGCVLYELLTLKR 199
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256 |
| >gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDN 683
+D+ A N L+ ED KV DFGLAR + D + S + + PPE + + + +
Sbjct: 124 RDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSD 183
Query: 684 IYRFGVVLLEL 694
++ FGV++ E+
Sbjct: 184 VWSFGVLMWEV 194
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256 |
| >gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 624 KDIKASNILLNED-FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERD 682
+DIK+ NI L+++ AK+ DFG+AR ++D T V + Y+ PE + R N +
Sbjct: 125 RDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPY-YLSPEICQNRPYNNKT 183
Query: 683 NIYRFGVVLLELVIRKQP 700
+I+ G VL EL K P
Sbjct: 184 DIWSLGCVLYELCTLKHP 201
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257 |
| >gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKAN 679
+ +D+K NILL++D K+ DFG A+++ S S + E R R A+
Sbjct: 124 IHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFAS 181
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280 |
| >gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCK--SHISTDVASAISYVPPEYGRARKAN 679
V +D+ A NIL+N + + KV DFGL+R++ D ++ ++ I + PE RK
Sbjct: 129 VHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFT 188
Query: 680 ERDNIYRFGVVLLELV 695
+++ FG+V+ E++
Sbjct: 189 SASDVWSFGIVMWEVM 204
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268 |
| >gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D++A+NIL++E K+ DFGLARLI D + I + PE +
Sbjct: 124 IHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIK 183
Query: 682 DNIYRFGVVLLELV 695
+++ FG++L E+V
Sbjct: 184 SDVWSFGILLTEIV 197
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260 |
| >gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAIS----YVPPEYGRARK 677
+ +DIK++NILL + K+ DFG +++ + + +S DV YV PE R +
Sbjct: 165 IHRDIKSANILLCSNGLVKLGDFGFSKMYA---ATVSDDVGRTFCGTPYYVAPEIWRRKP 221
Query: 678 ANERDNIYRFGVVLLELVIRKQP 700
+++ +++ GV+L EL+ K+P
Sbjct: 222 YSKKADMFSLGVLLYELLTLKRP 244
|
Length = 496 |
| >gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE--YGRARKANER 681
+DIK SNILLN K+ DFGLARL + +S T+ + Y PPE G R
Sbjct: 140 RDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAI 199
Query: 682 DNIYRFGVVLLELVIRK 698
D ++ G +L EL +K
Sbjct: 200 D-VWSCGCILGELFTKK 215
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 230 LDLSDNLLSGSL--TVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFT 287
L L + L G + +S +LQS+ ++S N + GNIPP + + L L N F
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSI---NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 288 GSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLG 328
GSI LG L L+I + N LSG +P+ LG
Sbjct: 480 GSIPESLGQ-------LTSLRILNLNG--NSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +DIK SN+L+N + K+ DFG+++++ + +T V + Y+ PE R E
Sbjct: 122 IHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVT-YMSPE----RIQGES 176
Query: 682 DN----IYRFGVVLLELVIRKQP 700
+ I+ G+ LLE + K P
Sbjct: 177 YSYAADIWSLGLTLLECALGKFP 199
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264 |
| >gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS-AISYVPPEYGRARKANE 680
V +D+ A N+L++ED AKV DFGL + S + D + + PE R +K +
Sbjct: 124 VHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWTAPEALREKKFST 178
Query: 681 RDNIYRFGVVLLELVIRKQPTGPKFEDKDIV 711
+ +++ FG++L E+ + P+ KD+V
Sbjct: 179 KSDVWSFGILLWEIYSFGRVPYPRIPLKDVV 209
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256 |
| >gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE--YGRARKANER 681
+D+K +N+L+ D K+ DFGLAR ++ V Y PE +G AR
Sbjct: 126 RDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVV-TRWYRAPELLFG-ARHYGVG 183
Query: 682 DNIYRFGVVLLELVIRK 698
+++ G + EL++R
Sbjct: 184 VDMWSVGCIFAELLLRV 200
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298 |
| >gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLIS---DCKSHISTDVASAISYVPPEYGRARKA 678
+ +DIKA NILL ED K+ DFG++ ++ D + ++ PE
Sbjct: 124 IHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHG 183
Query: 679 -NERDNIYRFGVVLLELVIRKQP 700
+ + +I+ FG+ +EL P
Sbjct: 184 YDFKADIWSFGITAIELATGAAP 206
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267 |
| >gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 16/94 (17%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPP------EYGRARK 677
+D+K SN+LLN + D K+ DFGLAR S+ ++ V + P EY A
Sbjct: 132 RDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAI- 190
Query: 678 ANERDNIYRFGVVLLELVIRKQPTGPKFEDKDIV 711
+++ G + EL+ RK P F KD V
Sbjct: 191 -----DVWSVGCIFAELLGRK----PLFPGKDYV 215
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337 |
| >gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 5e-05
Identities = 23/90 (25%), Positives = 47/90 (52%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D++A+NIL++ K+ DFGLAR+I D + I + PE +
Sbjct: 124 IHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIK 183
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKDIV 711
+++ FG++L+E+V + P + +++
Sbjct: 184 SDVWSFGILLMEIVTYGRIPYPGMSNPEVI 213
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260 |
| >gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 5e-05
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 23/124 (18%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +DIKA+N+LL+E D K+ DFG+A ++D + +T V + ++ PE + + +
Sbjct: 123 IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPF-WMAPEVIKQSAYDFK 181
Query: 682 DNIYRFGVVLLELVIRKQP----------------TGPKFED------KDIVVGCVSDNP 719
+I+ G+ +EL + P + P E K+ V C++ +P
Sbjct: 182 ADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSPPTLEGQYSKPFKEFVEACLNKDP 241
Query: 720 IAKP 723
+P
Sbjct: 242 RFRP 245
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277 |
| >gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 6e-05
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAI--SYVPPEYGRARKA 678
V +D+ A NIL+N + KV DFGL+R++ D T I + PE RK
Sbjct: 127 YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKF 186
Query: 679 NERDNIYRFGVVLLELV 695
+++ +G+V+ E++
Sbjct: 187 TSASDVWSYGIVMWEVM 203
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267 |
| >gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 7e-05
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 23/124 (18%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +DIKA+N+LL+E D K+ DFG+A ++D + +T V + ++ PE + + +
Sbjct: 123 IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPF-WMAPEVIQQSAYDSK 181
Query: 682 DNIYRFGVVLLELVIRKQPTG-----------PKFED-----------KDIVVGCVSDNP 719
+I+ G+ +EL + P PK K+ + C++ +P
Sbjct: 182 ADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDP 241
Query: 720 IAKP 723
+P
Sbjct: 242 SFRP 245
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277 |
| >gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANE--- 680
+D+K SNILL+ + K+ DFG++ + D K+ T A +Y+ PE N
Sbjct: 139 RDVKPSNILLDASGNVKLCDFGISGRLVDSKAK--TRSAGCAAYMAPERIDPPDPNPKYD 196
Query: 681 -RDNIYRFGVVLLELVIRKQP 700
R +++ G+ L+EL + P
Sbjct: 197 IRADVWSLGISLVELATGQFP 217
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296 |
| >gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD-CKSHISTDVASAISYVPPE------YGRARK 677
DIK +NIL++ D K+ DFG A+ + D + V ++ PE YGRA
Sbjct: 126 DIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRA-- 183
Query: 678 ANERDNIYRFGVVLLELVIRKQP 700
+I+ G ++E+ K P
Sbjct: 184 ----ADIWSLGCTVIEMATGKPP 202
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260 |
| >gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAI-----SYVPPEYGRAR 676
V +D+K NILL+ D K+ DFG+ CK ++ D + Y+ PE +
Sbjct: 118 VYRDLKLDNILLDTDGHIKIADFGM------CKENMLGDAKTCTFCGTPDYIAPEILLGQ 171
Query: 677 KANERDNIYRFGVVLLELVIRKQP 700
K N + + FGV+L E++I + P
Sbjct: 172 KYNTSVDWWSFGVLLYEMLIGQSP 195
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316 |
| >gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANE 680
V KD+ A NIL+ E K+ D GL+R I + + I ++PPE K +
Sbjct: 146 VHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSS 205
Query: 681 RDNIYRFGVVLLEL 694
+I+ FGVVL E+
Sbjct: 206 DSDIWSFGVVLWEI 219
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283 |
| >gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANE 680
V +D+ N L+ + K+ DFG++R I + + I ++PPE RK
Sbjct: 144 VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTT 203
Query: 681 RDNIYRFGVVLLELVIR-KQP 700
+I+ FGVVL E+ KQP
Sbjct: 204 ESDIWSFGVVLWEIFTYGKQP 224
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280 |
| >gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVA-SAISYVPPEYGRARKANE 680
V +D+ A NIL+N + KV DFGL+R + D ++ +T I + PE RK
Sbjct: 128 VHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTS 187
Query: 681 RDNIYRFGVVLLE 693
+++ FG+V+ E
Sbjct: 188 ASDVWSFGIVMWE 200
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266 |
| >gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISD 652
+ +D+K SNI +NED + K+LDFGLAR D
Sbjct: 140 IHRDLKPSNIAVNEDCELKILDFGLARHTDD 170
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 39/113 (34%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 85 LSR-RLGLAIANALKDLEELL-LRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLF 142
LSR + A+ L L EL+ L+ L L G + L KL L+LS N L
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLK-----LSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536
Query: 143 GQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPS 195
GQ S + L L L +NQLSG +P LG + L +++ N G +PS
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589
|
Length = 968 |
| >gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
V +D+ A NIL++ED AKV DFGLAR+ S + + + PE + +K + +
Sbjct: 122 VHRDLAARNILVSEDGVAKVSDFGLARV----GSMGVDNSKLPVKWTAPEALKHKKFSSK 177
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKDI 710
+++ +GV+L E+ + PK K++
Sbjct: 178 SDVWSYGVLLWEVFSYGRAPYPKMSLKEV 206
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254 |
| >gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+ A N L+++ KV DFGL+R + D + S + + PPE K + +
Sbjct: 122 IHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSK 181
Query: 682 DNIYRFGVVLLELV-IRKQP 700
+++ FGV++ E+ + K P
Sbjct: 182 SDVWAFGVLMWEVYSLGKMP 201
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256 |
| >gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
DIK+ NILL++D K+ DFG A ++ KS ++ V + ++ PE + + + +I
Sbjct: 141 DIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTP-YWMAPEVIKRKDYGPKVDI 199
Query: 685 YRFGVVLLELV 695
+ G++ +E+
Sbjct: 200 WSLGIMCIEMA 210
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286 |
| >gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+K SNI++ D K+LDFGLAR + C + + T Y PE E
Sbjct: 145 IHRDLKPSNIVVKSDCTLKILDFGLAR--TACTNFMMTPYVVTRYYRAPEVILGMGYKEN 202
Query: 682 DNIYRFGVVLLELV 695
+I+ G ++ ELV
Sbjct: 203 VDIWSVGCIMGELV 216
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359 |
| >gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +DIKA NILL E K+ DFG A + S S + T ++ PE A +
Sbjct: 147 IHRDIKAGNILLTEPGQVKLADFGSASIASPANSFVGTPY-----WMAPEVILAMDEGQY 201
Query: 682 D---NIYRFGVVLLELVIRKQP 700
D +++ G+ +EL RK P
Sbjct: 202 DGKVDVWSLGITCIELAERKPP 223
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317 |
| >gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.6 bits (101), Expect = 2e-04
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 622 VKKDIKASNILLNED-FDAKVLDFGLARLISDCKSHISTDVASAIS-----YVPPEY--- 672
+ +DIK NILL+ D K++DFGLA+L+ D S S + S Y+ PE
Sbjct: 123 IHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLG 182
Query: 673 GRARKANERDNIYRFGVVLLELVIRKQP 700
A+ +I+ G+ L EL+ P
Sbjct: 183 LSLAYASSSSDIWSLGITLYELLTGLPP 210
|
Length = 384 |
| >gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +DIKA NILL E K+ DFG A L+S S + T ++ PE A +
Sbjct: 137 IHRDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGTPY-----WMAPEVILAMDEGQY 191
Query: 682 D---NIYRFGVVLLELVIRKQP 700
D +++ G+ +EL RK P
Sbjct: 192 DGKVDVWSLGITCIELAERKPP 213
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307 |
| >gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISD 652
+D+K SNILLN D K+ DFGLAR +S+
Sbjct: 131 RDLKPSNILLNSDCRVKLADFGLARSLSE 159
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337 |
| >gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLIS 651
+D+K SN+LLN + D K+ DFGLAR+
Sbjct: 130 RDLKPSNLLLNTNCDLKICDFGLARIAD 157
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336 |
| >gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAI-----SYVPPEYGRARKA 678
+D+K N+LL++D K+ DFG+ CK +++ + ++ Y+ PE + +K
Sbjct: 120 RDLKLDNVLLDKDGHIKIADFGM------CKENMNGEGKASTFCGTPDYIAPEILKGQKY 173
Query: 679 NERDNIYRFGVVLLELVIRKQPTGPKFEDK 708
NE + + FGV+L E++I + P + ED+
Sbjct: 174 NESVDWWSFGVLLYEMLIGQSPFHGEDEDE 203
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316 |
| >gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 22/116 (18%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+K NILL+ D K+ DFGLA+ +S S +T + Y+ PE + + +
Sbjct: 118 DLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGT-PEYLAPEVLLGKGYGKAVDW 176
Query: 685 YRFGVVLLEL------------------VIRKQPTGPKF---EDKDIVVGCVSDNP 719
+ GV+L E+ +++ P+F E +D++ G + +P
Sbjct: 177 WSLGVLLYEMLTGKPPFYAEDRKEIYEKILKDPLRFPEFLSPEARDLISGLLQKDP 232
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250 |
| >gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVA-SAISYVPPEYGRARKANE 680
V +D+ A N L+ E+ K+ DFGL+R I + + I ++ PE + K
Sbjct: 124 VHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRGGGKLPIKWMAPESLKDGKFTS 183
Query: 681 RDNIYRFGVVLLEL 694
+ +++ FGV+L E+
Sbjct: 184 KSDVWSFGVLLWEI 197
|
Length = 258 |
| >gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +DIKA+N+LL+E + K+ DFG+A ++D + +T V + ++ PE + + +
Sbjct: 123 IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPF-WMAPEVIKQSAYDSK 181
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNP 719
+I+ G+ +EL + +P + ++ +NP
Sbjct: 182 ADIWSLGITAIELA-KGEPPHSELHPMKVLFLIPKNNP 218
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277 |
| >gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS-AISYVPPEYGRARKANE 680
+ +D+ A N +LNE+ + V DFGL++ I + + +A + ++ E R
Sbjct: 134 IHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTT 193
Query: 681 RDNIYRFGVVLLELVIRKQPTGPKFEDKDI 710
+ +++ FGV + E+ R Q P E+ +I
Sbjct: 194 KSDVWSFGVTMWEIATRGQTPYPGVENSEI 223
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272 |
| >gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 622 VKKDIKASNILLNE-DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANE 680
+ +D+K NILL++ K+ DFG+++++S KS T V + Y+ PE + N+
Sbjct: 123 LHRDLKTQNILLDKHKMVVKIGDFGISKILSS-KSKAYTVVGTP-CYISPELCEGKPYNQ 180
Query: 681 RDNIYRFGVVLLEL 694
+ +I+ G VL EL
Sbjct: 181 KSDIWALGCVLYEL 194
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256 |
| >gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+ A N L++ KV DFG+ R + D + S+ + + PPE K + +
Sbjct: 122 IHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSK 181
Query: 682 DNIYRFGVVLLEL 694
+++ FGV++ E+
Sbjct: 182 SDVWSFGVLMWEV 194
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256 |
| >gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +DIKA NILL E K+ DFG A S S + T ++ PE A +
Sbjct: 143 IHRDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGTPY-----WMAPEVILAMDEGQY 197
Query: 682 D---NIYRFGVVLLELVIRKQP 700
D +++ G+ +EL RK P
Sbjct: 198 DGKVDVWSLGITCIELAERKPP 219
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313 |
| >gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDN 683
+DIKA NILLNE+ AK+ DFG++ ++D + +T + + ++ PE + N + +
Sbjct: 123 RDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYNNKAD 181
Query: 684 IYRFGVVLLEL 694
I+ G+ +E+
Sbjct: 182 IWSLGITAIEM 192
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256 |
| >gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRARKAN 679
+ +D+ A NIL+ + K+ DFGLA+++ + K + + S I + PE R K +
Sbjct: 131 IHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFS 190
Query: 680 ERDNIYRFGVVLLELVIRKQPT 701
+++ FGV L EL P+
Sbjct: 191 SASDVWSFGVTLYELFTYGDPS 212
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284 |
| >gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLI--SDCKSHISTDVASAISYVPPE---YGRAR 676
V +D+ A N L+ E K+ DFGL+R I +D S + + ++PPE YG+
Sbjct: 146 VHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLL-PVRWMPPEAILYGKF- 203
Query: 677 KANERDNIYRFGVVLLEL 694
E D I+ FGVVL E+
Sbjct: 204 -TTESD-IWSFGVVLWEI 219
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283 |
| >gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE--YGRARKANER 681
+D+K +N+L++ D K+ DFGLARL S+ + + + + Y PE YG ARK +
Sbjct: 123 RDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYG-ARKYDPG 181
Query: 682 DNIYRFGVVLLELVIRKQP 700
+++ G + EL + P
Sbjct: 182 VDLWAVGCIFAEL-LNGSP 199
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 67/302 (22%), Positives = 101/302 (33%), Gaps = 50/302 (16%)
Query: 155 LKMLSLGENQLSGS----LPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSG 210
L++L L N L L S L L+ L L N TG +P L
Sbjct: 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQS----------- 72
Query: 211 NGFNGTVPIRLGELTRLQDLDLSDNLLS--GSLTVSLFTNLQSLSYLDVSNNLLSGNIPP 268
+ L + LQ+LDLSDN L G + SL L ++NN L
Sbjct: 73 ------LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR 126
Query: 269 EI-----SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPL 323
+ L LG N+ G+ L L EL + N +
Sbjct: 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL-----ANNGIGDAG 181
Query: 324 PSWLGK----WNQMESVWLNNNQF--IGRIPLEVG---NCSMLKYIRLSNNKLSGSIPRE 374
L + +E + LNNN G L S L+ + L +N L+ +
Sbjct: 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS-LEVLNLGDNNLTDAGAAA 240
Query: 375 LND-----SESLVEINLDGNMLSGT-IEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGN 428
L + SL+ ++L N ++ +D+ L +LDL N + +
Sbjct: 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300
Query: 429 LR 430
Sbjct: 301 SL 302
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 6e-04
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS-----AISYVPPEYGRAR 676
V +D+ A NIL+N + KV DFGL+R + D S T +S I + PE R
Sbjct: 128 VHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSD-PTYTSSLGGKIPIRWTAPEAIAYR 186
Query: 677 KANERDNIYRFGVVLLELV 695
K +++ +G+V+ E++
Sbjct: 187 KFTSASDVWSYGIVMWEVM 205
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269 |
| >gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDN 683
+DIK+ NI L +D K+ DFG+AR+++ T + + Y+ PE R N + +
Sbjct: 125 RDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPY-YLSPEICENRPYNNKSD 183
Query: 684 IYRFGVVLLELVIRKQ 699
I+ G VL E+ K
Sbjct: 184 IWALGCVLYEMCTLKH 199
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256 |
| >gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 7e-04
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASA---ISYVPPEYGRARKA 678
+ +D+ A N L+ E+ KV DFGL+RL++ T A A I + PE K
Sbjct: 126 IHRDLAARNCLVGENHLVKVADFGLSRLMTG---DTYTAHAGAKFPIKWTAPESLAYNKF 182
Query: 679 NERDNIYRFGVVLLEL 694
+ + +++ FGV+L E+
Sbjct: 183 SIKSDVWAFGVLLWEI 198
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263 |
| >gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEY----GRARK 677
+ +D+K SN+L+N + K+ DFG++ + D S T A Y+ PE +
Sbjct: 126 IHRDVKPSNVLINRNGQVKLCDFGISGYLVD--SVAKTIDAGCKPYMAPERINPELNQKG 183
Query: 678 ANERDNIYRFGVVLLELVIRKQP 700
+ + +++ G+ ++EL + P
Sbjct: 184 YDVKSDVWSLGITMIELATGRFP 206
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283 |
| >gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 7e-04
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDN 683
+D+K SNIL+N + K+ DFG++ + D ++ SY+ PE + + + +
Sbjct: 128 RDVKPSNILVNSRGEIKLCDFGVSGQLIDS---MANSFVGTRSYMSPERLQGTHYSVQSD 184
Query: 684 IYRFGVVLLELVIRKQPTGP 703
I+ G+ L+EL I + P P
Sbjct: 185 IWSMGLSLVELAIGRYPIPP 204
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331 |
| >gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 16/86 (18%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLIS----DCKSHISTDVAS------AISYVPPEYG 673
+D+K SN+L+NED + ++ DFG+AR +S + K ++ VA+ + PEY
Sbjct: 131 RDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYT 190
Query: 674 RARKANERDNIYRFGVVLLELVIRKQ 699
A +++ G + E++ R+Q
Sbjct: 191 TAI------DMWSVGCIFAEMLGRRQ 210
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334 |
| >gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 7e-04
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAIS----YVPPEYGRARKAN 679
+D+K++NI L K+ DFG ++ SD +S DVAS+ Y+ PE ++ +
Sbjct: 193 RDLKSANIFLMPTGIIKLGDFGFSKQYSDS---VSLDVASSFCGTPYYLAPELWERKRYS 249
Query: 680 ERDNIYRFGVVLLELVIRKQP-TGP 703
++ +++ GV+L EL+ +P GP
Sbjct: 250 KKADMWSLGVILYELLTLHRPFKGP 274
|
Length = 478 |
| >gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 9e-04
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCK----SHISTDVASAISYVPPE----YGRA 675
+D+K N+L+N D + K+ DFGLAR S+ ++ VA+ Y PE +
Sbjct: 129 RDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVAT-RWYRAPEIMLSFQSY 187
Query: 676 RKANERDNIYRFGVVLLELVIRKQPTGPKFEDKDIV 711
KA + ++ G +L EL+ RK P F+ KD V
Sbjct: 188 TKAID---VWSVGCILAELLGRK----PVFKGKDYV 216
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332 |
| >gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 9e-04
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLA-RLISDCKSHISTDVASAISYVPPEYGRARKANE 680
+ +DIK SNIL+N K+ DFG++ LI+ S T V ++ +Y+ PE + K
Sbjct: 126 MHRDIKPSNILVNSRGQIKLCDFGVSGELIN---SIADTFVGTS-TYMSPERIQGGKYTV 181
Query: 681 RDNIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVS 716
+ +++ G+ ++EL + K P D D +
Sbjct: 182 KSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMG 217
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284 |
| >gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLA-RLI-SDCKSHISTDVASAISYVPPEYGRARKANER 681
+D+K SNIL+N + K+ DFG++ +LI S S + T SY+ PE + +
Sbjct: 124 RDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTR-----SYMSPERLQGTHYTVQ 178
Query: 682 DNIYRFGVVLLELVIRKQPTGP 703
+I+ G+ L+E+ I + P P
Sbjct: 179 SDIWSLGLSLVEMAIGRYPIPP 200
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308 |
| >gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 24/125 (19%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +DIKA+NILL+E+ D K+ DFG++ ++ S +T V + ++ PE + +E+
Sbjct: 120 IHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPF-WMAPEVIKQSGYDEK 178
Query: 682 DNIYRFGVVLLEL-----------------VIRKQP----TGPKFED--KDIVVGCVSDN 718
+I+ G+ +EL +I K G KF KD V C++ +
Sbjct: 179 ADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKNNPPSLEGNKFSKPFKDFVSLCLNKD 238
Query: 719 PIAKP 723
P +P
Sbjct: 239 PKERP 243
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274 |
| >gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 25/146 (17%)
Query: 590 DGNNKFCEKNGIGGGGFGTVFK--GTMPD---GK-TVAVKK--------------DIKAS 629
DG C ++ + GG V K G +P+ GK ++AV K D+K S
Sbjct: 75 DGEISICMEH-MDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPS 133
Query: 630 NILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGV 689
NIL+N + K+ DFG++ + D ++ SY+ PE + + + +I+ G+
Sbjct: 134 NILVNSRGEIKLCDFGVSGQLIDS---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGL 190
Query: 690 VLLELVIRKQPT-GPKFEDKDIVVGC 714
L+E+ I + P P ++ +++ GC
Sbjct: 191 SLVEMAIGRYPIPPPDAKELELMFGC 216
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333 |
| >gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISD----CKSHISTDVASAISYVPPE-----Y 672
V +DIK SN+L+N + K+ DFG++R+++ C S + T I+Y+ PE
Sbjct: 190 VHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGT-----IAYMSPERINTDL 244
Query: 673 GRARKANERDNIYRFGVVLLELVIRKQPTG 702
+I+ GV +LE + + P G
Sbjct: 245 NHGAYDGYAGDIWSLGVSILEFYLGRFPFG 274
|
Length = 353 |
| >gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
V +DI A N+L++ K+ DFGL+R + D + ++ I ++ PE R+
Sbjct: 129 VHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSA 188
Query: 682 DNIYRFGVVLLELVIR-KQP 700
+++ FGV + E+++ +P
Sbjct: 189 SDVWMFGVCMWEILMLGVKP 208
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270 |
| >gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLI-SDCKSHISTDVASAISYVPPEYGRARKANE 680
V +++ A NILL D ++ DFG+A L+ D K + ++ + I ++ E +
Sbjct: 131 VHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTH 190
Query: 681 RDNIYRFGVVLLELV 695
+ +++ +GV + E++
Sbjct: 191 QSDVWSYGVTVWEMM 205
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279 |
| >gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 27/123 (21%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +DIKA+NIL+ + K+ DFG+A L++ S ST V + P + + +
Sbjct: 123 IHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTK 182
Query: 682 DNIYRFGVVLLE------------------LVIRKQPTGPKFED-------KDIVVGCVS 716
+I+ G+ + E L+ + +P P+ ED ++ V C+
Sbjct: 183 ADIWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSKP--PRLEDNGYSKLLREFVAACLD 240
Query: 717 DNP 719
+ P
Sbjct: 241 EEP 243
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277 |
| >gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLA----RLISDCKSHISTDVASAISYVPPEYGRARK 677
+ +D+KA NIL D D K+ DFG++ R I S I T A V E + R
Sbjct: 125 IHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRP 184
Query: 678 ANERDNIYRFGVVLLELVIRKQP 700
+ + +++ G+ L+E+ + P
Sbjct: 185 YDYKADVWSLGITLIEMAQIEPP 207
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282 |
| >gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 609 VFKGTMPDGKTVAVKKDIKASNILLNEDFDAKVLDFGLARLIS-DCKSHISTDVASAISY 667
+ KG M + V +D+ A N+L+ K+ DFGLARL+ D K + + I +
Sbjct: 118 IAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKW 177
Query: 668 VPPEYGRARKANERDNIYRFGVVLLELV 695
+ E RK + +++ +GV + EL+
Sbjct: 178 MALECIHYRKFTHQSDVWSYGVTIWELM 205
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303 |
| >gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-----STDVASAISYVPPEYGRAR 676
+ +D+ A N+L+ ED K+ DFGLAR I HI +T+ + ++ PE R
Sbjct: 162 IHRDLAARNVLVTEDNVMKIADFGLARDI----HHIDYYKKTTNGRLPVKWMAPEALFDR 217
Query: 677 KANERDNIYRFGVVLLEL 694
+ +++ FGV+L E+
Sbjct: 218 IYTHQSDVWSFGVLLWEI 235
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307 |
| >gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANE 680
V +D+ N L+ E+ K+ DFG++R + + + I ++PPE RK
Sbjct: 142 VHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTT 201
Query: 681 RDNIYRFGVVLLELVIR-KQP 700
+++ GVVL E+ KQP
Sbjct: 202 ESDVWSLGVVLWEIFTYGKQP 222
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288 |
| >gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANE 680
V +D+ A N ++ ED K+ DFG+ R I + + + ++ PE +
Sbjct: 141 VHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTT 200
Query: 681 RDNIYRFGVVLLELV 695
+ +++ FGVVL E+
Sbjct: 201 KSDVWSFGVVLWEMA 215
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277 |
| >gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLIS 651
+ +DIK +NILL ED D K+ DFG++ ++
Sbjct: 123 IHRDIKGANILLTEDGDVKLADFGVSAQLT 152
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262 |
| >gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+KA NILL+E K+ DFG A +++ + T ++ PE A +
Sbjct: 137 IHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGTPY-----WMAPEVILAMDEGQY 191
Query: 682 D---NIYRFGVVLLELVIRKQP 700
D +++ G+ +EL RK P
Sbjct: 192 DGKVDVWSLGITCIELAERKPP 213
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308 |
| >gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
V +D+ +NI+L ED + DFGLA+ T V I Y PE + E+
Sbjct: 136 VHRDLTPNNIMLGEDDKVTITDFGLAKQKQ--PESKLTSVVGTILYSCPEIVKNEPYGEK 193
Query: 682 DNIYRFGVVLLELVIRKQP 700
+++ FG +L ++ + P
Sbjct: 194 ADVWAFGCILYQMCTLQPP 212
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269 |
| >gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+ A N L+ E+ KV DFG+ R + D + ST + + PE K + +
Sbjct: 122 IHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSK 181
Query: 682 DNIYRFGVVLLEL 694
+++ FGV++ E+
Sbjct: 182 SDVWSFGVLMWEV 194
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256 |
| >gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANE 680
+ +D+ A N+L+ ED K+ DFGLAR + + + +T+ + ++ PE R
Sbjct: 156 IHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTH 215
Query: 681 RDNIYRFGVVLLEL 694
+ +++ FGV+L E+
Sbjct: 216 QSDVWSFGVLLWEI 229
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334 |
| >gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+K SN+ +NED + K+LDFGLAR D ++ VA+ P N+
Sbjct: 142 IHRDLKPSNLAVNEDCELKILDFGLARHTDD---EMTGYVATRWYRAPEIMLNWMHYNQT 198
Query: 682 DNIYRFGVVLLELV 695
+I+ G ++ EL+
Sbjct: 199 VDIWSVGCIMAELL 212
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345 |
| >gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANE 680
+ +D+ A N+L+ ED K+ DFGLAR I + +T+ + ++ PE R
Sbjct: 154 IHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTH 213
Query: 681 RDNIYRFGVVLLELV 695
+ +++ FGV+L E+
Sbjct: 214 QSDVWSFGVLLWEIF 228
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293 |
| >gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRARKAN 679
+ +D+ A N+LL+ D K+ DFGLA+ + + + + D S + + E + K +
Sbjct: 129 IHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFS 188
Query: 680 ERDNIYRFGVVLLELVIR---KQPTGPKFED 707
+++ FGV L EL+ KQ KFE+
Sbjct: 189 YASDVWSFGVTLYELLTHCDSKQSPPKKFEE 219
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283 |
| >gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDN 683
+D+K SNIL+N K+ DFG++ + + S T V ++ SY+ PE + + + +
Sbjct: 125 RDVKPSNILVNSRGQIKLCDFGVSGQLVN--SLAKTFVGTS-SYMAPERIQGNDYSVKSD 181
Query: 684 IYRFGVVLLELVIRKQPTGP 703
I+ G+ L+EL + P P
Sbjct: 182 IWSLGLSLIELATGRFPYPP 201
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265 |
| >gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHIST-DVASAISYVPPEYGRARKANE 680
+ +D+ A NILL+E+ K+ DFGLAR I ++ D + ++ PE R
Sbjct: 201 IHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTI 260
Query: 681 RDNIYRFGVVLLEL 694
+ +++ FGV+L E+
Sbjct: 261 QSDVWSFGVLLWEI 274
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343 |
| >gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANE 680
V +D+ N L+ D K+ DFG++R + + + I ++PPE RK
Sbjct: 144 VHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTT 203
Query: 681 RDNIYRFGVVLLEL-VIRKQP 700
+++ FGVVL E+ KQP
Sbjct: 204 ESDVWSFGVVLWEIFTYGKQP 224
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280 |
| >gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.004
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANE 680
V +D+ N L+ + K+ DFG++R + + + I ++PPE RK
Sbjct: 145 VHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTT 204
Query: 681 RDNIYRFGVVLLELVIR-KQP 700
+++ FGV+L E+ KQP
Sbjct: 205 ESDVWSFGVILWEIFTYGKQP 225
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291 |
| >gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +DIKA+NIL +D K+ DFG+A ++D S V ++ PE A+
Sbjct: 121 IHRDIKAANILTTKDGVVKLADFGVATKLND-VSKDDASVVGTPYWMAPEVIEMSGASTA 179
Query: 682 DNIYRFGVVLLELVIRKQP 700
+I+ G ++EL+ P
Sbjct: 180 SDIWSLGCTVIELLTGNPP 198
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.004
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 202 QLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNL 261
LKSLD S N L L+ LDLS N L+ S++ F+ L SL LD+S N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59
Query: 262 L 262
L
Sbjct: 60 L 60
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.98 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.95 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.92 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 99.9 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 99.87 | |
| KOG0593 | 396 | consensus Predicted protein kinase KKIAMRE [Genera | 99.87 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.86 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.86 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 99.86 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 99.85 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 99.84 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.84 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 99.83 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 99.82 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 99.82 | |
| KOG0600 | 560 | consensus Cdc2-related protein kinase [Cell cycle | 99.82 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 99.82 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 99.81 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 99.81 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.8 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.8 | |
| KOG0659 | 318 | consensus Cdk activating kinase (CAK)/RNA polymera | 99.8 | |
| KOG1095 | 1025 | consensus Protein tyrosine kinase [Signal transduc | 99.8 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 99.79 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 99.79 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 99.79 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 99.78 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 99.77 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 99.77 | |
| KOG0660 | 359 | consensus Mitogen-activated protein kinase [Signal | 99.77 | |
| KOG0658 | 364 | consensus Glycogen synthase kinase-3 [Carbohydrate | 99.77 | |
| KOG0663 | 419 | consensus Protein kinase PITSLRE and related kinas | 99.77 | |
| KOG4278 | 1157 | consensus Protein tyrosine kinase [Signal transduc | 99.76 | |
| KOG1026 | 774 | consensus Nerve growth factor receptor TRKA and re | 99.76 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 99.76 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 99.76 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 99.76 | |
| KOG1006 | 361 | consensus Mitogen-activated protein kinase (MAPK) | 99.76 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 99.75 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 99.75 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 99.75 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 99.75 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 99.74 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 99.74 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 99.74 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 99.74 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.74 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 99.74 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 99.74 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 99.74 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 99.74 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 99.74 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 99.74 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 99.74 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 99.73 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.73 | |
| KOG0196 | 996 | consensus Tyrosine kinase, EPH (ephrin) receptor f | 99.73 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 99.73 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 99.73 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 99.73 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 99.73 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 99.73 | |
| PTZ00284 | 467 | protein kinase; Provisional | 99.73 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 99.73 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 99.73 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 99.73 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 99.73 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 99.72 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.72 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 99.72 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 99.72 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 99.72 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 99.72 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.72 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 99.72 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 99.72 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 99.72 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 99.72 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.72 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 99.71 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 99.71 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 99.71 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 99.71 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.71 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 99.71 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.71 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.71 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 99.71 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 99.71 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.71 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 99.71 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.71 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 99.71 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 99.71 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.71 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.71 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 99.71 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 99.71 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.71 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 99.71 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 99.71 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.71 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 99.71 | |
| cd05112 | 256 | PTKc_Itk Catalytic domain of the Protein Tyrosine | 99.71 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 99.7 | |
| KOG0577 | 948 | consensus Serine/threonine protein kinase [Signal | 99.7 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 99.7 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.7 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 99.7 | |
| KOG0594 | 323 | consensus Protein kinase PCTAIRE and related kinas | 99.7 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 99.7 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 99.7 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 99.7 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 99.7 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 99.7 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 99.7 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.7 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 99.7 | |
| KOG0667 | 586 | consensus Dual-specificity tyrosine-phosphorylatio | 99.7 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 99.7 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 99.69 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.69 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 99.69 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 99.69 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 99.69 | |
| KOG4257 | 974 | consensus Focal adhesion tyrosine kinase FAK, cont | 99.69 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.69 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.69 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 99.69 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.69 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 99.69 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 99.69 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 99.69 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 99.69 | |
| PHA03209 | 357 | serine/threonine kinase US3; Provisional | 99.69 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 99.69 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 99.69 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 99.69 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 99.69 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.69 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 99.69 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.69 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 99.69 | |
| cd05034 | 261 | PTKc_Src_like Catalytic domain of Src kinase-like | 99.69 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.69 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 99.68 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 99.68 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 99.68 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 99.68 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.68 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 99.68 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.68 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.68 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.68 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 99.68 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 99.68 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.68 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.68 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.68 | |
| cd06656 | 297 | STKc_PAK3 Catalytic domain of the Protein Serine/T | 99.68 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 99.68 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.68 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.68 | |
| cd06617 | 283 | PKc_MKK3_6 Catalytic domain of the dual-specificit | 99.68 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 99.68 | |
| KOG0199 | 1039 | consensus ACK and related non-receptor tyrosine ki | 99.68 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 99.68 | |
| cd06651 | 266 | STKc_MEKK3 Catalytic domain of the Protein Serine/ | 99.68 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 99.68 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 99.68 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.67 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 99.67 | |
| cd07833 | 288 | STKc_CDKL Catalytic domain of Cyclin-Dependent pro | 99.67 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.67 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 99.67 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 99.67 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.67 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.67 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 99.67 | |
| cd07846 | 286 | STKc_CDKL2_3 Catalytic domain of the Serine/Threon | 99.67 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.67 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 99.67 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.67 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.67 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 99.67 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 99.67 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 99.67 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.67 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 99.67 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 99.67 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 99.67 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 99.67 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 99.67 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 99.67 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 99.66 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 99.66 | |
| KOG0194 | 474 | consensus Protein tyrosine kinase [Signal transduc | 99.66 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 99.66 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.66 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 99.66 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 99.66 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.66 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 99.66 | |
| cd06607 | 307 | STKc_TAO Catalytic domain of the Protein Serine/Th | 99.66 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 99.66 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 99.66 | |
| cd06631 | 265 | STKc_YSK4 Catalytic domain of the Protein Serine/T | 99.66 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 99.66 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 99.66 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 99.66 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 99.66 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 99.66 | |
| cd06641 | 277 | STKc_MST3 Catalytic domain of the Protein Serine/T | 99.66 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.66 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.65 | |
| cd07847 | 286 | STKc_CDKL1_4 Catalytic domain of the Serine/Threon | 99.65 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 99.65 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 99.65 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.65 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 99.65 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 99.65 | |
| cd07860 | 284 | STKc_CDK2_3 Catalytic domain of the Serine/Threoni | 99.65 | |
| KOG1025 | 1177 | consensus Epidermal growth factor receptor EGFR an | 99.65 | |
| cd06618 | 296 | PKc_MKK7 Catalytic domain of the dual-specificity | 99.65 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.65 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 99.65 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 99.65 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 99.65 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 99.65 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.64 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 99.64 | |
| cd05081 | 284 | PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of | 99.64 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 99.64 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.64 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 99.64 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 99.64 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.64 | |
| cd05083 | 254 | PTKc_Chk Catalytic domain of the Protein Tyrosine | 99.64 | |
| cd05623 | 332 | STKc_MRCK_alpha Catalytic domain of the Protein Se | 99.64 | |
| cd07870 | 291 | STKc_PFTAIRE2 Catalytic domain of the Serine/Threo | 99.64 | |
| cd06632 | 258 | STKc_MEKK1_plant Catalytic domain of the Protein S | 99.64 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.64 | |
| cd05039 | 256 | PTKc_Csk_like Catalytic domain of C-terminal Src k | 99.64 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.64 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 99.64 | |
| cd06615 | 308 | PKc_MEK Catalytic domain of the dual-specificity P | 99.64 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 99.63 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 99.63 | |
| cd06626 | 264 | STKc_MEKK4 Catalytic domain of the Protein Serine/ | 99.63 | |
| cd07849 | 336 | STKc_ERK1_2_like Catalytic domain of Extracellular | 99.63 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 99.63 | |
| cd05065 | 269 | PTKc_EphR_B Catalytic domain of the Protein Tyrosi | 99.63 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 99.63 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.63 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 99.63 | |
| cd06652 | 265 | STKc_MEKK2 Catalytic domain of the Protein Serine/ | 99.63 | |
| cd07844 | 291 | STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like | 99.63 | |
| cd05597 | 331 | STKc_DMPK_like Catalytic domain of Myotonic Dystro | 99.63 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 99.63 | |
| cd05624 | 331 | STKc_MRCK_beta Catalytic domain of the Protein Ser | 99.63 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 99.63 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 99.63 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 99.63 | |
| KOG0669 | 376 | consensus Cyclin T-dependent kinase CDK9 [Cell cyc | 99.63 | |
| cd05066 | 267 | PTKc_EphR_A Catalytic domain of the Protein Tyrosi | 99.63 | |
| cd05079 | 284 | PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the | 99.63 | |
| cd06647 | 293 | STKc_PAK_I Catalytic domain of the Protein Serine/ | 99.63 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 99.63 | |
| cd07835 | 283 | STKc_CDK1_like Catalytic domain of Cyclin-Dependen | 99.63 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 99.62 | |
| KOG1024 | 563 | consensus Receptor-like protein tyrosine kinase RY | 99.62 | |
| cd06635 | 317 | STKc_TAO1 Catalytic domain of the Protein Serine/T | 99.62 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.62 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 99.62 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 99.62 | |
| cd07879 | 342 | STKc_p38delta_MAPK13 Catalytic domain of the Serin | 99.62 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 99.62 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 99.62 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 99.62 | |
| KOG0984 | 282 | consensus Mitogen-activated protein kinase (MAPK) | 99.62 | |
| cd06611 | 280 | STKc_SLK_like Catalytic domain of Ste20-like kinas | 99.62 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 99.62 | |
| KOG1094 | 807 | consensus Discoidin domain receptor DDR1 [Signal t | 99.62 | |
| PLN03225 | 566 | Serine/threonine-protein kinase SNT7; Provisional | 99.62 | |
| cd06657 | 292 | STKc_PAK4 Catalytic domain of the Protein Serine/T | 99.62 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 99.62 | |
| smart00219 | 258 | TyrKc Tyrosine kinase, catalytic domain. Phosphotr | 99.62 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 99.62 | |
| KOG2052 | 513 | consensus Activin A type IB receptor, serine/threo | 99.62 | |
| cd07843 | 293 | STKc_CDC2L1 Catalytic domain of the Serine/Threoni | 99.62 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.62 | |
| cd05633 | 279 | STKc_GRK3 Catalytic domain of the Protein Serine/T | 99.62 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 99.62 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.62 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 99.61 | |
| cd07845 | 309 | STKc_CDK10 Catalytic domain of the Serine/Threonin | 99.61 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 99.61 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 99.61 | |
| cd07832 | 286 | STKc_CCRK Catalytic domain of the Serine/Threonine | 99.61 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 99.61 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 99.61 | |
| cd05122 | 253 | PKc_STE Catalytic domain of STE family Protein Kin | 99.61 | |
| cd06629 | 272 | STKc_MAPKKK_Bck1_like Catalytic domain of fungal B | 99.61 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 99.61 | |
| cd06623 | 264 | PKc_MAPKK_plant_like Catalytic domain of Plant dua | 99.61 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 99.61 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 99.61 | |
| cd05042 | 269 | PTKc_Aatyk Catalytic domain of the Protein Tyrosin | 99.61 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 99.61 | |
| cd07838 | 287 | STKc_CDK4_6_like Catalytic domain of Cyclin-Depend | 99.61 | |
| cd07865 | 310 | STKc_CDK9 Catalytic domain of the Serine/Threonine | 99.6 | |
| cd07850 | 353 | STKc_JNK Catalytic domain of the Serine/Threonine | 99.6 | |
| cd07852 | 337 | STKc_MAPK15 Catalytic domain of the Serine/Threoni | 99.6 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 99.6 | |
| cd05086 | 268 | PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi | 99.6 | |
| cd07855 | 334 | STKc_ERK5 Catalytic domain of the Serine/Threonine | 99.6 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 99.6 | |
| cd07858 | 337 | STKc_TEY_MAPK_plant Catalytic domain of the Serine | 99.6 | |
| cd07840 | 287 | STKc_CDK9_like Catalytic domain of Cyclin-Dependen | 99.6 | |
| cd06634 | 308 | STKc_TAO2 Catalytic domain of the Protein Serine/T | 99.6 | |
| cd06614 | 286 | STKc_PAK Catalytic domain of the Protein Serine/Th | 99.6 | |
| cd06621 | 287 | PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek | 99.6 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 99.6 | |
| cd06633 | 313 | STKc_TAO3 Catalytic domain of the Protein Serine/T | 99.59 | |
| cd05038 | 284 | PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P | 99.59 | |
| PLN00009 | 294 | cyclin-dependent kinase A; Provisional | 99.59 | |
| cd08530 | 256 | STKc_CNK2-like Catalytic domain of the Protein Ser | 99.59 | |
| KOG0666 | 438 | consensus Cyclin C-dependent kinase CDK8 [Transcri | 99.59 | |
| PHA03210 | 501 | serine/threonine kinase US3; Provisional | 99.59 | |
| cd05606 | 278 | STKc_beta_ARK Catalytic domain of the Protein Seri | 99.59 | |
| cd07830 | 283 | STKc_MAK_like Catalytic domain of Male germ cell-A | 99.59 | |
| cd05583 | 288 | STKc_MSK_N N-terminal catalytic domain of the Prot | 99.59 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 99.59 | |
| cd05118 | 283 | STKc_CMGC Catalytic domain of CMGC family Serine/T | 99.59 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 99.59 | |
| cd07864 | 302 | STKc_CDK12 Catalytic domain of the Serine/Threonin | 99.59 | |
| cd07841 | 298 | STKc_CDK7 Catalytic domain of the Serine/Threonine | 99.59 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 99.59 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 99.58 | |
| cd05577 | 277 | STKc_GRK Catalytic domain of the Protein Serine/Th | 99.58 | |
| cd05037 | 259 | PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the | 99.58 | |
| cd05579 | 265 | STKc_MAST_like Catalytic domain of Microtubule-ass | 99.58 | |
| cd08227 | 327 | PK_STRAD_alpha Pseudokinase domain of STE20-relate | 99.58 | |
| cd07834 | 330 | STKc_MAPK Catalytic domain of the Serine/Threonine | 99.58 | |
| cd05076 | 274 | PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th | 99.58 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 99.58 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 99.58 | |
| cd07836 | 284 | STKc_Pho85 Catalytic domain of the Serine/Threonin | 99.58 | |
| cd05613 | 290 | STKc_MSK1_N N-terminal catalytic domain of the Pro | 99.58 | |
| cd07857 | 332 | STKc_MPK1 Catalytic domain of the Serine/Threonine | 99.58 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 99.57 | |
| cd05572 | 262 | STKc_cGK_PKG Catalytic domain of the Protein Serin | 99.57 | |
| cd05046 | 275 | PTK_CCK4 Pseudokinase domain of the Protein Tyrosi | 99.57 | |
| cd06627 | 254 | STKc_Cdc7_like Catalytic domain of Cell division c | 99.57 | |
| cd07856 | 328 | STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre | 99.57 | |
| cd08215 | 258 | STKc_Nek Catalytic domain of the Protein Serine/Th | 99.57 | |
| KOG1151 | 775 | consensus Tousled-like protein kinase [Signal tran | 99.56 | |
| KOG0200 | 609 | consensus Fibroblast/platelet-derived growth facto | 99.56 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 99.56 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 99.56 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 99.56 | |
| cd06630 | 268 | STKc_MEKK1 Catalytic domain of the Protein Serine/ | 99.56 | |
| cd07851 | 343 | STKc_p38 Catalytic domain of the Serine/Threonine | 99.56 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 99.56 | |
| KOG0662 | 292 | consensus Cyclin-dependent kinase CDK5 [Intracellu | 99.55 | |
| cd05578 | 258 | STKc_Yank1 Catalytic domain of the Protein Serine/ | 99.55 | |
| smart00750 | 176 | KIND kinase non-catalytic C-lobe domain. It is an | 99.55 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 99.55 | |
| cd06606 | 260 | STKc_MAPKKK Catalytic domain of the Protein Serine | 99.55 | |
| cd06653 | 264 | STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina | 99.55 | |
| cd07877 | 345 | STKc_p38alpha_MAPK14 Catalytic domain of the Serin | 99.55 | |
| cd07829 | 282 | STKc_CDK_like Catalytic domain of Cyclin-Dependent | 99.54 | |
| PTZ00024 | 335 | cyclin-dependent protein kinase; Provisional | 99.54 | |
| cd05581 | 280 | STKc_PDK1 Catalytic domain of the Protein Serine/T | 99.54 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 99.54 | |
| KOG0611 | 668 | consensus Predicted serine/threonine protein kinas | 99.54 | |
| cd07854 | 342 | STKc_MAPK4_6 Catalytic domain of the Serine/Threon | 99.54 | |
| KOG0664 | 449 | consensus Nemo-like MAPK-related serine/threonine | 99.53 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 99.53 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 99.52 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 99.52 | |
| cd07880 | 343 | STKc_p38gamma_MAPK12 Catalytic domain of the Serin | 99.52 | |
| cd05576 | 237 | STKc_RPK118_like Catalytic domain of the Protein S | 99.51 | |
| cd05123 | 250 | STKc_AGC Catalytic domain of AGC family Protein Se | 99.51 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 99.51 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 99.5 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.5 | |
| cd08222 | 260 | STKc_Nek11 Catalytic domain of the Protein Serine/ | 99.5 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 99.49 | |
| cd08216 | 314 | PK_STRAD Pseudokinase domain of STE20-related kina | 99.49 | |
| cd08226 | 328 | PK_STRAD_beta Pseudokinase domain of STE20-related | 99.49 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.48 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 99.48 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.47 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 99.47 | |
| KOG4250 | 732 | consensus TANK binding protein kinase TBK1 [Signal | 99.43 | |
| smart00220 | 244 | S_TKc Serine/Threonine protein kinases, catalytic | 99.4 | |
| PLN03224 | 507 | probable serine/threonine protein kinase; Provisio | 99.4 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 99.39 | |
| KOG0671 | 415 | consensus LAMMER dual specificity kinases [Signal | 99.39 | |
| KOG4236 | 888 | consensus Serine/threonine protein kinase PKC mu/P | 99.39 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 99.38 | |
| KOG0665 | 369 | consensus Jun-N-terminal kinase (JNK) [Signal tran | 99.34 | |
| KOG0587 | 953 | consensus Traf2- and Nck-interacting kinase and re | 99.32 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.28 | |
| KOG0670 | 752 | consensus U4/U6-associated splicing factor PRP4 [R | 99.27 | |
| KOG0608 | 1034 | consensus Warts/lats-like serine threonine kinases | 99.22 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 99.18 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.17 | |
| KOG0576 | 829 | consensus Mitogen-activated protein kinase kinase | 99.17 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.17 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.14 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.13 | |
| cd00180 | 215 | PKc Catalytic domain of Protein Kinases. Protein K | 99.12 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.11 | |
| smart00221 | 225 | STYKc Protein kinase; unclassified specificity. Ph | 99.05 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.03 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 99.03 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.02 | |
| KOG0668 | 338 | consensus Casein kinase II, alpha subunit [Signal | 98.97 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.93 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.9 | |
| KOG1033 | 516 | consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati | 98.9 | |
| KOG1152 | 772 | consensus Signal transduction serine/threonine kin | 98.9 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.89 | |
| KOG1167 | 418 | consensus Serine/threonine protein kinase of the C | 98.87 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.85 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.82 | |
| KOG1345 | 378 | consensus Serine/threonine kinase [Signal transduc | 98.82 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.81 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.79 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.77 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.74 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.68 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.68 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 98.67 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 98.66 | |
| PF14531 | 288 | Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_ | 98.64 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.64 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.57 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.57 | |
| KOG0606 | 1205 | consensus Microtubule-associated serine/threonine | 98.56 | |
| KOG1023 | 484 | consensus Natriuretic peptide receptor, guanylate | 98.47 | |
| KOG1290 | 590 | consensus Serine/threonine protein kinase [Signal | 98.45 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 98.45 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 98.28 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.25 | |
| COG0515 | 384 | SPS1 Serine/threonine protein kinase [General func | 98.24 | |
| KOG1165 | 449 | consensus Casein kinase (serine/threonine/tyrosine | 98.22 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 98.16 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.12 | |
| KOG1163 | 341 | consensus Casein kinase (serine/threonine/tyrosine | 98.09 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.0 | |
| KOG1164 | 322 | consensus Casein kinase (serine/threonine/tyrosine | 97.96 | |
| KOG1166 | 974 | consensus Mitotic checkpoint serine/threonine prot | 97.92 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.92 | |
| KOG4158 | 598 | consensus BRPK/PTEN-induced protein kinase [Signal | 97.87 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.86 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.73 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.67 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.66 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.63 | |
| KOG0590 | 601 | consensus Checkpoint kinase and related serine/thr | 97.6 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.49 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.49 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.48 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.46 | |
| PRK10359 | 232 | lipopolysaccharide core biosynthesis protein; Prov | 97.42 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.31 | |
| PRK12274 | 218 | serine/threonine protein kinase; Provisional | 97.22 | |
| cd05144 | 198 | RIO2_C RIO kinase family; RIO2, C-terminal catalyt | 97.19 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.19 | |
| cd05145 | 190 | RIO1_like RIO kinase family; RIO1, RIO3 and simila | 97.19 | |
| cd05147 | 190 | RIO1_euk RIO kinase family; eukaryotic RIO1, catal | 97.1 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.07 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.02 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.93 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.88 | |
| KOG0601 | 524 | consensus Cyclin-dependent kinase WEE1 [Cell cycle | 96.87 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.86 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.69 | |
| TIGR01982 | 437 | UbiB 2-polyprenylphenol 6-hydroxylase. This model | 96.59 | |
| cd05119 | 187 | RIO RIO kinase family, catalytic domain. The RIO k | 96.41 | |
| KOG1266 | 458 | consensus Protein kinase [Signal transduction mech | 96.04 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.96 | |
| PRK04750 | 537 | ubiB putative ubiquinone biosynthesis protein UbiB | 95.92 | |
| TIGR03724 | 199 | arch_bud32 Kae1-associated kinase Bud32. Members o | 95.73 | |
| PRK14879 | 211 | serine/threonine protein kinase; Provisional | 95.7 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.59 | |
| smart00090 | 237 | RIO RIO-like kinase. | 95.53 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-72 Score=678.12 Aligned_cols=592 Identities=30% Similarity=0.516 Sum_probs=308.5
Q ss_pred cEEEEcCCCCCcCcCCccCC-CCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEee
Q 046589 107 VVYQVLRTQSLKGPVSPLLF-DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLC 185 (729)
Q Consensus 107 ~~~l~l~~~~l~~~~~~~l~-~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls 185 (729)
++.|++++|.+.|.+|..++ .+++|++|+|++|.+++..|. +.+++|++|+|++|.+++.+|..++.+++|++|+|+
T Consensus 95 L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 172 (968)
T PLN00113 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLG 172 (968)
T ss_pred CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECc
Confidence 44444444444444443332 444444444444444433322 223344444444444444444444444444444444
Q ss_pred ccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccccc
Q 046589 186 SNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGN 265 (729)
Q Consensus 186 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 265 (729)
+|.+++.+|..++++++|++|+|++|.+.+.+|..++++++|++|++++|.+++.+| ..+..+++|++|++++|.+++.
T Consensus 173 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred cCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC-hhHhcCCCCCEEECcCceeccc
Confidence 444444444444444444444444444444444444444444444444444443333 2334444444444444444444
Q ss_pred CCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCccee
Q 046589 266 IPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIG 345 (729)
Q Consensus 266 ~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 345 (729)
+|..++.+++|+.++++.|.+.+.+|..+.+++++ ..++++.|.+.+.+|.++..+++|+.|++++|.+.+
T Consensus 252 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L---------~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 252 IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL---------ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred cChhHhCCCCCCEEECcCCeeeccCchhHhhccCc---------CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 44444444444444444444443333333332221 223333333333333333333334444444333333
Q ss_pred cCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCcccccccc---------------------CC
Q 046589 346 RIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRC---------------------TN 404 (729)
Q Consensus 346 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---------------------~~ 404 (729)
.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|.+++.+|..+... ..
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 333333333334444444333333333333333333334443333333333222110 12
Q ss_pred CCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEe
Q 046589 405 LSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLD 484 (729)
Q Consensus 405 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~Ld 484 (729)
+++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|+|++|++.+.+|..+ ..++|+.||
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ 481 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLD 481 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEE
Confidence 2233333333333333333333333333333333333333333333333333333333333333333322 123333333
Q ss_pred CCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccc---------cccccccccccccCC
Q 046589 485 LSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTGYIPRSLGHLSCS 555 (729)
Q Consensus 485 Ls~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~l---------l~g~ip~~~~~l~~L 555 (729)
+++|++++.+|.. +..+++|+.|++++|++++.+|..++.+..+ ++|.+|..+..+++|
T Consensus 482 ls~n~l~~~~~~~------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 549 (968)
T PLN00113 482 LSRNQFSGAVPRK------------LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549 (968)
T ss_pred CcCCccCCccChh------------hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccC
Confidence 3333333332222 2244566677777777777777666554333 456677777778888
Q ss_pred ceeeccCCcceeecccccccccccccccCCcccccC------------------Cc------------------------
Q 046589 556 VKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG------------------NN------------------------ 593 (729)
Q Consensus 556 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g------------------~~------------------------ 593 (729)
+.|||++|++++.+|..+.++++|+.|++++|++.| |.
T Consensus 550 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~~~~~~ 629 (968)
T PLN00113 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWW 629 (968)
T ss_pred CEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccccceee
Confidence 888888888888888777778888888888877764 00
Q ss_pred -------------------------------------------------------------ccccccCCCCCCcceEEEe
Q 046589 594 -------------------------------------------------------------KFCEKNGIGGGGFGTVFKG 612 (729)
Q Consensus 594 -------------------------------------------------------------~~~~~~~ig~g~~~~v~k~ 612 (729)
.+.....+|+|+||.||||
T Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~ 709 (968)
T PLN00113 630 FYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDILSSLKEENVISRGKKGASYKG 709 (968)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccchhhhHHHHHhhCCcccEEccCCCeeEEEE
Confidence 0011235899999999999
Q ss_pred ec-CCCCceeeec-------------------------------------------------------------------
Q 046589 613 TM-PDGKTVAVKK------------------------------------------------------------------- 624 (729)
Q Consensus 613 ~~-~~~~~~avk~------------------------------------------------------------------- 624 (729)
+. .+|..||||+
T Consensus 710 ~~~~~~~~vavK~~~~~~~~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~i 789 (968)
T PLN00113 710 KSIKNGMQFVVKEINDVNSIPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRNLSWERRRKIAIGI 789 (968)
T ss_pred EECCCCcEEEEEEccCCccccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhcCCHHHHHHHHHHH
Confidence 97 5888999985
Q ss_pred ------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHH
Q 046589 625 ------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYR 686 (729)
Q Consensus 625 ------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s 686 (729)
|+||+||+++.+..+++. +|.+...... ....++.+|+|||+.....++.|+||||
T Consensus 790 a~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~sDv~S 863 (968)
T PLN00113 790 AKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTD-----TKCFISSAYVAPETRETKDITEKSDIYG 863 (968)
T ss_pred HHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccC-----CCccccccccCcccccCCCCCcccchhh
Confidence 999999999999988876 6665443211 1235678999999998888999999999
Q ss_pred HHHHHHHHHhCCCCCCCC---------cch------------------------------HHHHhhcccCCCCCCCCccc
Q 046589 687 FGVVLLELVIRKQPTGPK---------FED------------------------------KDIVVGCVSDNPIAKPGMLR 727 (729)
Q Consensus 687 ~G~vl~el~tg~~p~~~~---------~~~------------------------------~~l~~~c~~~~p~~Rp~~~~ 727 (729)
|||++|||+||+.|++.. |.+ .+++.+||+.+|++||||+|
T Consensus 864 ~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~e 943 (968)
T PLN00113 864 FGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCAND 943 (968)
T ss_pred HHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcCCchhCcCHHH
Confidence 999999999999996421 100 05788999999999999999
Q ss_pred cC
Q 046589 728 VQ 729 (729)
Q Consensus 728 v~ 729 (729)
|+
T Consensus 944 vl 945 (968)
T PLN00113 944 VL 945 (968)
T ss_pred HH
Confidence 74
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=510.36 Aligned_cols=484 Identities=36% Similarity=0.524 Sum_probs=429.7
Q ss_pred hhhcccccccchhHHHHHhcCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccc-cCCCCCCEEeccCC
Q 046589 85 LSRRLGLAIANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQV-SNLKRLKMLSLGEN 163 (729)
Q Consensus 85 l~~~~~~~~~~~l~~l~~~~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N 163 (729)
...|.|+.|.+ ..+++.++++++.+.|.+++.+..+++|++|+|++|++.+..|..+ ..+++|++|+|++|
T Consensus 57 ~c~w~gv~c~~--------~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n 128 (968)
T PLN00113 57 VCLWQGITCNN--------SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128 (968)
T ss_pred CCcCcceecCC--------CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC
Confidence 45566666643 3579999999999999999999999999999999999998777654 58999999999999
Q ss_pred cCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCh
Q 046589 164 QLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTV 243 (729)
Q Consensus 164 ~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 243 (729)
++++.+|. +.+++|++|+|++|.+++.+|..++++++|++|+|++|.+.+.+|..++++++|++|++++|.+++.+|
T Consensus 129 ~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p- 205 (968)
T PLN00113 129 NFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP- 205 (968)
T ss_pred ccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC-
Confidence 99988886 568999999999999999999999999999999999999999999999999999999999999997777
Q ss_pred hhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCc
Q 046589 244 SLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPL 323 (729)
Q Consensus 244 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~ 323 (729)
..+..+++|++|++++|.+.+.+|..++.+++|+.++++.|.+++.+|..+.+++++ ..++++.|.+.+.+
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L---------~~L~L~~n~l~~~~ 276 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL---------QYLFLYQNKLSGPI 276 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC---------CEEECcCCeeeccC
Confidence 678999999999999999999999999999999999999999999999888887765 57788899999999
Q ss_pred chhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccC
Q 046589 324 PSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCT 403 (729)
Q Consensus 324 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 403 (729)
|.++..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..++
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--- 353 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG--- 353 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887664
Q ss_pred CCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEE
Q 046589 404 NLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFL 483 (729)
Q Consensus 404 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 483 (729)
.+++|+.|++++|++++.+|.++..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+..+++|+.|
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 433 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence 56778999999999999999999999999999999999998899989999999999999999998899999999999999
Q ss_pred eCCCCcCcccccccccc--ccccc---------CCCCcccCCCCCeEecCCCcCcccCCchhhccccc---------ccc
Q 046589 484 DLSYNNLSRPILSKHSS--YFHEV---------NIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTG 543 (729)
Q Consensus 484 dLs~N~l~~~~~~~~~~--~~~~~---------~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~l---------l~g 543 (729)
|+++|.+++.++..... ..... .++......+|+.||+++|++++.+|..+..+..+ +.+
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence 99999998876653321 11111 11222234678899999999999999877655433 677
Q ss_pred ccccccccccCCceeeccCCcceeecccccccccccccccCCcccccC
Q 046589 544 YIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 544 ~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 591 (729)
.+|..+..+++|++|+|++|++++.+|..|.++++|+.|+|++|+++|
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 899999999999999999999999999999999999999999999987
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=326.34 Aligned_cols=366 Identities=25% Similarity=0.261 Sum_probs=263.4
Q ss_pred CEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCC
Q 046589 156 KMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDN 235 (729)
Q Consensus 156 ~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 235 (729)
+.||+|+|.+...-+..|-++++|+++++..|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 44566666665555555556666666666666555 55554444445666666666665555555555666666666666
Q ss_pred cCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEcc
Q 046589 236 LLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAG 315 (729)
Q Consensus 236 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~ 315 (729)
.|+ .++...|..-.++++|+|++|.|+..-...|..+.+|..+.|+.|+++
T Consensus 160 ~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit---------------------------- 210 (873)
T KOG4194|consen 160 LIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT---------------------------- 210 (873)
T ss_pred hhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc----------------------------
Confidence 655 555555555556666666666665544455555555544444444433
Q ss_pred CCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCc
Q 046589 316 MNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTI 395 (729)
Q Consensus 316 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 395 (729)
...+..|.++++|+.|+|..|++.-.--..|..+++|+.|.|..|++...-...|..+..+++|+|..|+++..-
T Consensus 211 -----tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 211 -----TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred -----ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 122233445666677777777665433456777888888888888888777778888888888888888887655
Q ss_pred cccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhh
Q 046589 396 EDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIA 475 (729)
Q Consensus 396 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 475 (729)
... +-++++|+.|+||+|.|..+.++.++-+++|++|+|++|+|+..-+..|..+..|++|+|++|+++..--..|.
T Consensus 286 ~g~---lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 286 EGW---LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred ccc---ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 543 35677889999999999988899999999999999999999977788899999999999999999877677899
Q ss_pred cCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccccccccc-cccccccC
Q 046589 476 DLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIP-RSLGHLSC 554 (729)
Q Consensus 476 ~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip-~~~~~l~~ 554 (729)
.+++|+.|||++|.+++.|.+... -+..++.|+.|++.+|++. .|| +.|.++.+
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~---------~f~gl~~LrkL~l~gNqlk----------------~I~krAfsgl~~ 417 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAV---------AFNGLPSLRKLRLTGNQLK----------------SIPKRAFSGLEA 417 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchh---------hhccchhhhheeecCceee----------------ecchhhhccCcc
Confidence 999999999999999987765433 2346788999999999996 333 46889999
Q ss_pred CceeeccCCcceeecccccccccccccccCC
Q 046589 555 SVKLNLSGNKLSVLVPTSFGNLNGLTNLDLS 585 (729)
Q Consensus 555 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 585 (729)
|+.|||.+|.|..+.|.+|..+ .|+.|-+.
T Consensus 418 LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 418 LEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred cceecCCCCcceeecccccccc-hhhhhhhc
Confidence 9999999999999999999998 78877654
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=325.75 Aligned_cols=444 Identities=29% Similarity=0.426 Sum_probs=310.8
Q ss_pred cEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeec
Q 046589 107 VVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186 (729)
Q Consensus 107 ~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 186 (729)
+..+++++|.+. .+.+.+.++..|++|++++|++... |++++.+..++.|+.|+|+++ .+|+.++.+.+|..|+.++
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQL-PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhhhC-CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 456777888876 4566778888999999999998774 567788888999999999998 8899999999999999999
Q ss_pred cCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccC
Q 046589 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNI 266 (729)
Q Consensus 187 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 266 (729)
|.+. .+|++++.+..|..|+..+|+++ ..|+.++++.+|..|++.+|+++ ..|+..+. ++.|++||..+|-+. .+
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cC
Confidence 9997 78888999999999999999988 78888999999999999999987 66656555 889999999988887 78
Q ss_pred CccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcC-CCCCCCEEEccCCccee
Q 046589 267 PPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLG-KWNQMESVWLNNNQFIG 345 (729)
Q Consensus 267 p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~ 345 (729)
|..++.+.+|..+|+..|++. ..| +|..|..+. ++..+.|++. .+|.+.+ .++++..|||.+|++.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~---------Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk- 265 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLK---------ELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK- 265 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHH---------HHHhcccHHH-hhHHHHhcccccceeeeccccccc-
Confidence 888999999999999999886 344 677776653 2334444443 4555544 5666666666666665
Q ss_pred cCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCC-------------------------------
Q 046589 346 RIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGT------------------------------- 394 (729)
Q Consensus 346 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~------------------------------- 394 (729)
..|..+..+.+|.+||+|+|.|++ .|..++++ +|+.|.+.+|.+..+
T Consensus 266 e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred cCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 456666666666666666666663 45566666 666666666654310
Q ss_pred -------ccccccccCCCCCCcEEEcCCCcCcccCCc-ccCCC--CCCCEEEccCCccccccCcCccCCCCCCEE-Eccc
Q 046589 395 -------IEDVFGRCTNLSQLEKLDLSSNMLTGRIPK-EIGNL--RSIQILKLNSNFFNGSIPMRLGDSTSLNIL-ELGN 463 (729)
Q Consensus 395 -------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L-~Ls~ 463 (729)
++..|.....+.+.+.|+++.-+++. +|+ .|..- .-....+++.|++. .+|..+..+..+.+. .+++
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhccccccccc-CCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhc
Confidence 11112222233445667777766663 343 33222 22566777777776 566666555555443 3333
Q ss_pred ccCCccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccc---
Q 046589 464 NNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV--- 540 (729)
Q Consensus 464 N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~l--- 540 (729)
|.+ +.+|..++.+++|..|+|++|.+. .+|...+ .+..|+.+|+|.|+|. .+|+.+.....+
T Consensus 422 n~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~------------~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtl 486 (565)
T KOG0472|consen 422 NKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMG------------SLVRLQTLNLSFNRFR-MLPECLYELQTLETL 486 (565)
T ss_pred Ccc-ccchHHHHhhhcceeeecccchhh-hcchhhh------------hhhhhheecccccccc-cchHHHhhHHHHHHH
Confidence 433 467777777777777777777664 3343333 3344677777777764 455543222111
Q ss_pred c-----ccccc-cccccccCCceeeccCCcceeecccccccccccccccCCcccccC
Q 046589 541 L-----TGYIP-RSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 541 l-----~g~ip-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 591 (729)
+ .|.++ ..+.+|++|.+|||.+|.+.. +|..++++++|+.|++++|+|.-
T Consensus 487 las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 487 LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred HhccccccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCccCC
Confidence 0 12334 448999999999999999986 67789999999999999999874
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=313.42 Aligned_cols=368 Identities=23% Similarity=0.237 Sum_probs=264.4
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
+...+.||+++|.+...-+..+.++++|+++++.+|.++.++ .......+|+.|+|.+|.|+.+-.+++.-++.|+.||
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP-~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIP-RFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcc-cccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 344667888888877766667778888888888888877653 2223344688888888888766677777788888888
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 263 (729)
||.|.++...-.+|..-.++++|+|++|.|+..--..|..+.+|.+|.|+.|+++ .+|...|.+++.|+.|||..|+|.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence 8888887555566777778888888888888766777888888888888888887 777788888888888888888876
Q ss_pred ccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcc
Q 046589 264 GNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQF 343 (729)
Q Consensus 264 ~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 343 (729)
-.---.|..|++|+.+.+..|.+...-...|..|.+ +..+++.+|++...-..|+..++.|+.|+|++|.+
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~k---------me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEK---------MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecc---------cceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 433456677777777777777766433333433433 25667777777766666777777777777777777
Q ss_pred eecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCC
Q 046589 344 IGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIP 423 (729)
Q Consensus 344 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 423 (729)
....+..+..+++|+.|+|++|+|+...+..|..+..|++|+|++|.++..-...| ..+++|+.|||++|.+++.+-
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af---~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF---VGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH---HHhhhhhhhcCcCCeEEEEEe
Confidence 77777777777777777777777777777777777777777777777765555444 345567777777777765543
Q ss_pred ---cccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCC
Q 046589 424 ---KEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLS 486 (729)
Q Consensus 424 ---~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs 486 (729)
..|.+|++|+.|++.+|++....-.+|.++.+|+.|||.+|.|..+-|++|..+ .|+.|-+.
T Consensus 383 Daa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred cchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 356677777777777777774444577777777777777777777777777776 66666554
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-36 Score=302.41 Aligned_cols=421 Identities=26% Similarity=0.389 Sum_probs=326.3
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
+..++++++..|.+. +.|+.++.+..++.|+.++|++... |..++++..|+.|+.++|.+. .+|++++.+..|+.|+
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~l-p~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSEL-PEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLD 143 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhc-cHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhh
Confidence 445788999999988 6899999999999999999999764 667888999999999999998 8899999999999999
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 263 (729)
..+|+++ ..|++++++.+|..|++.+|+++...|..+. ++.|++|+...|-+. .+| ..++.+.+|..|+|..|++.
T Consensus 144 ~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP-~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 144 ATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLP-PELGGLESLELLYLRRNKIR 219 (565)
T ss_pred ccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCC-hhhcchhhhHHHHhhhcccc
Confidence 9999998 7889999999999999999999955555454 999999999999886 788 56799999999999999998
Q ss_pred ccCCccccCCCcCCeecccccccccccccccc-CCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCc
Q 046589 264 GNIPPEISHLKKLSDHYLGINQFTGSIQSELG-NCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQ 342 (729)
Q Consensus 264 ~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~-~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 342 (729)
.+| +|..+..|.+++++.|++. .+|.+.. ++.. +..+|+..|++. +.|..++.+.+|++||+++|.
T Consensus 220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~---------l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNS---------LLVLDLRDNKLK-EVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccc---------ceeeeccccccc-cCchHHHHhhhhhhhcccCCc
Confidence 566 8899999999999999986 4444432 2322 578899999998 789999999999999999999
Q ss_pred ceecCCCCCcCCCCCcEEEecCCCCCCC-------------------------------------Ccc----cccCCCCC
Q 046589 343 FIGRIPLEVGNCSMLKYIRLSNNKLSGS-------------------------------------IPR----ELNDSESL 381 (729)
Q Consensus 343 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-------------------------------------~p~----~~~~l~~L 381 (729)
++ .+|.+++++ +|+.|.+.+|.+... .|. ....+.+.
T Consensus 287 is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 287 IS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred cc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence 98 467789999 999999999965210 000 11223467
Q ss_pred cEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEc
Q 046589 382 VEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILEL 461 (729)
Q Consensus 382 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 461 (729)
+.|++++-+++..+.++|..... .-....+++.|++. .+|..+..+..+.+.-+..|+..+.+|..+..+++|..|+|
T Consensus 365 kiL~~s~~qlt~VPdEVfea~~~-~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L 442 (565)
T KOG0472|consen 365 KILDVSDKQLTLVPDEVFEAAKS-EIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDL 442 (565)
T ss_pred hhhcccccccccCCHHHHHHhhh-cceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeec
Confidence 78888888888888788764321 22456788888876 56776666665554333333333466777777777777777
Q ss_pred ccccCCccCchhhhcCCCCCEEeCCCCcCcccccccccc------------cccccCCCCcccCCCCCeEecCCCcCccc
Q 046589 462 GNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSS------------YFHEVNIPDLSYSHNYRKFDLSYNMLSGP 529 (729)
Q Consensus 462 s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~ldls~N~l~g~ 529 (729)
++|-+. .+|..++.+..|+.||+|.|+|. .+|..... ....++...+..+.+|..||+.+|.+.
T Consensus 443 ~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-- 518 (565)
T KOG0472|consen 443 SNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-- 518 (565)
T ss_pred ccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh--
Confidence 777775 67777777777777777777664 23332210 011122223557788899999999886
Q ss_pred CCchhhccccccccccccccccccCCceeeccCCcce
Q 046589 530 IPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLS 566 (729)
Q Consensus 530 ~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~ 566 (729)
.||+.+++|++|++|++++|.|.
T Consensus 519 --------------~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 519 --------------QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred --------------hCChhhccccceeEEEecCCccC
Confidence 67888999999999999999998
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-33 Score=293.57 Aligned_cols=364 Identities=27% Similarity=0.351 Sum_probs=238.8
Q ss_pred CCcEEEEcCCCCCcC-cCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 105 LRVVYQVLRTQSLKG-PVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 105 ~~~~~l~l~~~~l~~-~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
.-|+..|+++|.++| .+|..+..++.++.|.|...++.. .|..++.+.+|+.|.+++|++. .+-..+..|+.|+.++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 345666777777764 366666677777777776666644 4566667777777777777765 4555666677777777
Q ss_pred eeccCCC-ccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccc
Q 046589 184 LCSNSFT-GEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL 262 (729)
Q Consensus 184 Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 262 (729)
+.+|++. .-+|..+..+..|..||||+|+++ ..|..+..-+++-.|+||+|+|. .||...|.+++.|-.||||+|++
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence 7777664 345666667777777777777776 66777777777777777777775 66666777777777777777777
Q ss_pred cccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCC-CCCCCcchhcCCCCCCCEEEccCC
Q 046589 263 SGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMN-QLSGPLPSWLGKWNQMESVWLNNN 341 (729)
Q Consensus 263 ~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n-~l~~~~p~~l~~l~~L~~L~L~~n 341 (729)
. .+|..+..+..|++|.|++|.+.-..-..+..++. +..+.++.. +-...+|..+..+.+|..++++.|
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts---------L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS---------LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh---------hhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 6 56666666677777777766543111011111111 111222211 112246667777777777777777
Q ss_pred cceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcc-
Q 046589 342 QFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTG- 420 (729)
Q Consensus 342 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~- 420 (729)
.+. .+|..+.++++|+.|+||+|+|+. ..-......+|++|+|+.|+++.. |+.. .++++|+.|.+.+|+++-
T Consensus 233 ~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~L-P~av---cKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVL-PDAV---CKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred CCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccc-hHHH---hhhHHHHHHHhccCccccc
Confidence 765 567777777777777777777763 333444556777777777777643 3333 345566777777777652
Q ss_pred cCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcC
Q 046589 421 RIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNL 490 (729)
Q Consensus 421 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l 490 (729)
-+|..++.+.+|+.+..++|.+. .+|..+..+..|+.|.|++|++. ++|+.|.-++.|+.||+..|.=
T Consensus 307 GiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred CCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 26777777888888887777776 77777777778888888888876 6777777778888888877753
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-33 Score=306.16 Aligned_cols=365 Identities=28% Similarity=0.347 Sum_probs=186.7
Q ss_pred cEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeec
Q 046589 107 VVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186 (729)
Q Consensus 107 ~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 186 (729)
+..+++++|.+. ..|..+..+.+|+.|+++.|.+...+ .+..++++|++|+|.+|.+. ..|..+..+++|+.||+++
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence 455555544433 45555555566666666666555433 44555556666666666555 5566666666666666666
Q ss_pred cCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccC
Q 046589 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNI 266 (729)
Q Consensus 187 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 266 (729)
|++. .+|..+..++.+..++.++|.-...++ ... ++.+++..|.+.+.+. .....++. .|||..|.+.
T Consensus 124 N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg----~~~-ik~~~l~~n~l~~~~~-~~i~~l~~--~ldLr~N~~~--- 191 (1081)
T KOG0618|consen 124 NHFG-PIPLVIEVLTAEEELAASNNEKIQRLG----QTS-IKKLDLRLNVLGGSFL-IDIYNLTH--QLDLRYNEME--- 191 (1081)
T ss_pred hccC-CCchhHHhhhHHHHHhhhcchhhhhhc----ccc-chhhhhhhhhcccchh-cchhhhhe--eeecccchhh---
Confidence 6654 555556666666666666652111111 111 5555555555554444 22233333 4777777765
Q ss_pred CccccCCCcCCeecccccccccccc-----cccc--CC--CCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEE
Q 046589 267 PPEISHLKKLSDHYLGINQFTGSIQ-----SELG--NC--KNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVW 337 (729)
Q Consensus 267 p~~l~~l~~L~~l~l~~n~l~~~~~-----~~l~--~l--~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~ 337 (729)
-..+..+.+|+.+....|++..... ..+. .+ ..+........+..++++.|++++ +|+|++.+.+|+.+.
T Consensus 192 ~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 192 VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALN 270 (1081)
T ss_pred hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcccceEec
Confidence 1234455555555555554431110 0000 00 000000111225667777777774 558888888888888
Q ss_pred ccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCc
Q 046589 338 LNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNM 417 (729)
Q Consensus 338 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 417 (729)
..+|+++ .+|..+....+|+.|...+|.+. -+|....+.++|+.|+|..|++...++..+... + ..|+.|+.+.|+
T Consensus 271 ~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~-~-~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 271 ANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVL-N-ASLNTLNVSSNK 346 (1081)
T ss_pred ccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhh-h-HHHHHHhhhhcc
Confidence 8888774 55666666677777777777776 356666667777778887777765554333211 0 113333444444
Q ss_pred CcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCc
Q 046589 418 LTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491 (729)
Q Consensus 418 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 491 (729)
+.......=..++.|+.|++.+|.+++..-..+.+.++|++|+|++|++.......+.++..|+.|+||+|+++
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence 33211111122334444444444444443333444444444444444444222233444444444444444443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-32 Score=287.25 Aligned_cols=366 Identities=25% Similarity=0.311 Sum_probs=263.6
Q ss_pred CCCCCCcEEECCCCCCCC-CCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCc
Q 046589 126 FDLSKLRVLNLSQNLLFG-QPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLK 204 (729)
Q Consensus 126 ~~L~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 204 (729)
+-|+-.+-.|+++|.++| ..|.....++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 346677889999999995 57888889999999999999998 89999999999999999999998 5667788999999
Q ss_pred EEEccCCCCCC-CCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeecccc
Q 046589 205 SLDFSGNGFNG-TVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGI 283 (729)
Q Consensus 205 ~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~ 283 (729)
.+++.+|++.. -+|..+..+..|..|+||+|++. ..| ..+...+++-+|+||+|+|....-.-+-++..|-.|+|++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP-~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVP-TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcc-hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 99999999863 46888999999999999999998 677 5678888999999999999843334556788888888888
Q ss_pred ccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcce-ecCCCCCcCCCCCcEEEe
Q 046589 284 NQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFI-GRIPLEVGNCSMLKYIRL 362 (729)
Q Consensus 284 n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L 362 (729)
|++.. +|..+..+.. +.++.+++|-+.----..+..+++|+.|.+++.+-+ .-+|.++..+.+|..+||
T Consensus 160 NrLe~-LPPQ~RRL~~---------LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 160 NRLEM-LPPQIRRLSM---------LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred chhhh-cCHHHHHHhh---------hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 88752 3322222221 244455555332111112234455666667665432 246667777777777777
Q ss_pred cCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCcc
Q 046589 363 SNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFF 442 (729)
Q Consensus 363 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 442 (729)
|.|.+. .+|..+.++.+|+.|+|++|+++..--.. ..-.+|++|+||.|+++ .+|..+..++.|+.|.+.+|++
T Consensus 230 S~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~----~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 230 SENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTE----GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred cccCCC-cchHHHhhhhhhheeccCcCceeeeeccH----HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcc
Confidence 777776 57777777777777777777776432111 11235677777777777 5777777777777777777776
Q ss_pred c-cccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEec
Q 046589 443 N-GSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDL 521 (729)
Q Consensus 443 ~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldl 521 (729)
+ .-+|..++.+.+|+++..++|++. ..|+.++.+..|+.|.|+.|++- +.|..+. .++.+..||+
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH------------lL~~l~vLDl 369 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH------------LLPDLKVLDL 369 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh------------hcCCcceeec
Confidence 5 236777777777777777777776 67777777777777777777764 3344333 4556667777
Q ss_pred CCCc
Q 046589 522 SYNM 525 (729)
Q Consensus 522 s~N~ 525 (729)
..|.
T Consensus 370 reNp 373 (1255)
T KOG0444|consen 370 RENP 373 (1255)
T ss_pred cCCc
Confidence 6663
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-31 Score=288.52 Aligned_cols=445 Identities=25% Similarity=0.298 Sum_probs=291.9
Q ss_pred cEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeec
Q 046589 107 VVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186 (729)
Q Consensus 107 ~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 186 (729)
++.++++.|.+-...-+.+.+--+|+.||+++|++.. .|..+..+.+|+.|+++.|.|. ..|.+..++.+|++|.|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS-FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccccc-CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence 5667777776543212223333349999999998865 4567788889999999999998 7889999999999999999
Q ss_pred cCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccC
Q 046589 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNI 266 (729)
Q Consensus 187 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 266 (729)
|.+. .+|.++..+++|++|++++|++. .+|..+..++.++.+..++|... ..++... .+.+++..|.+.+.+
T Consensus 101 n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~-----~~lg~~~-ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 101 NRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI-----QRLGQTS-IKKLDLRLNVLGGSF 172 (1081)
T ss_pred chhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh-----hhhcccc-chhhhhhhhhcccch
Confidence 9887 88999999999999999999997 88999999999999999998222 2233333 888999999999988
Q ss_pred CccccCCCcCCeeccccccccccccccccCCCCcccccccc-----------eeEEEEccCCCCCCCcchhcCCCCCCCE
Q 046589 267 PPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAEL-----------QIFTFSAGMNQLSGPLPSWLGKWNQMES 335 (729)
Q Consensus 267 p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l-----------~l~~l~l~~n~l~~~~p~~l~~l~~L~~ 335 (729)
+..+..++. .+++..|.+.. ..+.++.++....... .+..++..+|.+....+. ..-.+|++
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~ 245 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQY 245 (1081)
T ss_pred hcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--ccccccee
Confidence 888888877 68889988762 2223333332211111 112223333333211110 11134555
Q ss_pred EEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCC
Q 046589 336 VWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSS 415 (729)
Q Consensus 336 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 415 (729)
++++.|++++ +|.+++.+.+|+.++..+|+++ .+|..+....+|+.|...+|.+.-.++. ...+++|++|||..
T Consensus 246 ~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~----le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 246 LDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPF----LEGLKSLRTLDLQS 319 (1081)
T ss_pred eecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCc----ccccceeeeeeehh
Confidence 5555555542 3355555555555555555553 3444555555555555555555433322 12344555555555
Q ss_pred CcCcccCCcccCCCCC-CCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcccc
Q 046589 416 NMLTGRIPKEIGNLRS-IQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPI 494 (729)
Q Consensus 416 N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~ 494 (729)
|+|....+..+.-+.. |..|+.+.|++....-..-.....|+.|++.+|.++...-..+.+..+|++|+|++|++. .+
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~f 398 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SF 398 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cC
Confidence 5555322222222222 455555555554221111123557899999999999888888999999999999999996 33
Q ss_pred cccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccc--------cccccccccccccCCceeeccCCcce
Q 046589 495 LSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV--------LTGYIPRSLGHLSCSVKLNLSGNKLS 566 (729)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~l--------l~g~ip~~~~~l~~L~~L~Ls~N~l~ 566 (729)
|... +..+..|++|+||+|+++ .+|.++..|..+ .--..| .+..+++|+.+|+|.|+++
T Consensus 399 pas~-----------~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 399 PASK-----------LRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred CHHH-----------HhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence 4332 236677899999999997 577776555443 112456 8899999999999999998
Q ss_pred eecccccccccccccccCCccc
Q 046589 567 VLVPTSFGNLNGLTNLDLSYNE 588 (729)
Q Consensus 567 ~~~p~~~~~l~~L~~L~Ls~N~ 588 (729)
...-..-..-++|++|||++|.
T Consensus 466 ~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 466 EVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhCCCcccceeeccCCc
Confidence 6543222223789999999997
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-27 Score=239.26 Aligned_cols=402 Identities=24% Similarity=0.254 Sum_probs=259.8
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeec-cCCCccCCccccCCCCCcEEEc
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS-NSFTGEMPSELGDMKQLKSLDF 208 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L 208 (729)
..+.++|..|+|+.+++.+|+.+++||.||||+|+|+.+-|++|.++.+|..|-+.+ |+|+......|++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 678899999999999999999999999999999999999999999999998877766 9999776778999999999999
Q ss_pred cCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccc
Q 046589 209 SGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTG 288 (729)
Q Consensus 209 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 288 (729)
..|++.....+.|..+++|..|.+.+|.+. .++...|..+.+++++.+..|.+.. .++++.+.... ..+.+.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a~~~ie- 219 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-AMNPIE- 219 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----ccccchhhhHH-hhchhh-
Confidence 999999888899999999999999999997 7777789999999999999887542 35555554321 111110
Q ss_pred cccccccCCCCcccccccceeEEEEccCCCCCCCcchhc-CCCCCCCEEEccCCcceecCC-CCCcCCCCCcEEEecCCC
Q 046589 289 SIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWL-GKWNQMESVWLNNNQFIGRIP-LEVGNCSMLKYIRLSNNK 366 (729)
Q Consensus 289 ~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~ 366 (729)
.....|..-.. + ..+++...-+..+ +.+..+.+-..+.+...+..| ..|..+++|++|+|++|+
T Consensus 220 ---tsgarc~~p~r-l----------~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 220 ---TSGARCVSPYR-L----------YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred ---cccceecchHH-H----------HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 00001110000 0 0000000000000 001111111111222222222 237778888888888888
Q ss_pred CCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCcccccc
Q 046589 367 LSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSI 446 (729)
Q Consensus 367 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 446 (729)
++++-+.+|.+...+++|.|..|++...-..+| .++..|+.|+|++|+|+...|..|..+.+|.+|+|-.|.+.-.-
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f---~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMF---QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhh---hccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 888888888888888888888888876555555 55667888888888888888888888888888888888765211
Q ss_pred C-cCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCccc---ccccccccccccCCCCcccC---------
Q 046589 447 P-MRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRP---ILSKHSSYFHEVNIPDLSYS--------- 513 (729)
Q Consensus 447 p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~---~~~~~~~~~~~~~~~~~~~~--------- 513 (729)
. .|++. .|..+.-.|..| -.....++.++++++.+... -|....-. ..-+....+
T Consensus 363 ~l~wl~~-------Wlr~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~---~s~~cP~~c~c~~tVvRc 430 (498)
T KOG4237|consen 363 RLAWLGE-------WLRKKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCL---TSSPCPPPCTCLDTVVRC 430 (498)
T ss_pred chHHHHH-------HHhhCCCCCCCC--CCCCchhccccchhccccccccCCccccCCC---CCCCCCCCcchhhhhHhh
Confidence 0 11110 011111111111 11122344455555544321 01110000 000000000
Q ss_pred -------------CCCCeEecCCCcCcccCCchhhccccccccccccccccccCCceeeccCCcceeecccccccccccc
Q 046589 514 -------------HNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLT 580 (729)
Q Consensus 514 -------------~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 580 (729)
..-.++++.+|.++ .+|.+ .++.+ .+|+|+|+++.....+|.+++.|.
T Consensus 431 Snk~lk~lp~~iP~d~telyl~gn~~~----------------~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~ 491 (498)
T KOG4237|consen 431 SNKLLKLLPRGIPVDVTELYLDGNAIT----------------SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLS 491 (498)
T ss_pred cccchhhcCCCCCchhHHHhcccchhc----------------ccCHH--HHhhh-hcccccCceehhhcccccchhhhh
Confidence 11123444444443 34555 46667 899999999999999999999999
Q ss_pred cccCCcc
Q 046589 581 NLDLSYN 587 (729)
Q Consensus 581 ~L~Ls~N 587 (729)
+|-+|||
T Consensus 492 tlilsyn 498 (498)
T KOG4237|consen 492 TLILSYN 498 (498)
T ss_pred eeEEecC
Confidence 9999997
|
|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-24 Score=228.71 Aligned_cols=139 Identities=45% Similarity=0.825 Sum_probs=119.0
Q ss_pred CCcccccccCCCCCCcceEEEeecCCCCceeeec----------------------------------------------
Q 046589 591 GNNKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK---------------------------------------------- 624 (729)
Q Consensus 591 g~~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~---------------------------------------------- 624 (729)
+|++|+..+.||.|+||.||||.+.+|+.||||+
T Consensus 73 AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~LVYE 152 (361)
T KOG1187|consen 73 ATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLLVYE 152 (361)
T ss_pred HHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEEEEE
Confidence 4799999999999999999999999999999996
Q ss_pred -------------------------------------------------cccccceEecCCccEEEeecCCccccCCCCC
Q 046589 625 -------------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKS 655 (729)
Q Consensus 625 -------------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~ 655 (729)
|+|++|||||++++|||+|||+|+.......
T Consensus 153 ym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~ 232 (361)
T KOG1187|consen 153 YMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDT 232 (361)
T ss_pred ccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCcccc
Confidence 9999999999999999999999977543111
Q ss_pred cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC----------Ccch------------------
Q 046589 656 HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP----------KFED------------------ 707 (729)
Q Consensus 656 ~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~----------~~~~------------------ 707 (729)
+..+...||.+|+||||..++.+++|+|||||||+++|++||++|.+. .|..
T Consensus 233 ~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~ 312 (361)
T KOG1187|consen 233 SVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKE 312 (361)
T ss_pred ceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccC
Confidence 111111789999999999999999999999999999999999988662 1210
Q ss_pred ------H------HHHhhcccCCCCCCCCccccC
Q 046589 708 ------K------DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 708 ------~------~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+ .++.+|++.+|..||+|.+|+
T Consensus 313 ~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv 346 (361)
T KOG1187|consen 313 GEYPDEKEVKKLAELALRCLRPDPKERPTMSQVV 346 (361)
T ss_pred CCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHH
Confidence 0 689999999999999999974
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=244.17 Aligned_cols=343 Identities=19% Similarity=0.199 Sum_probs=245.0
Q ss_pred CcccccCCCCCCEEeccCCc------CcccCCccccCCC-CCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCC
Q 046589 145 PSPQVSNLKRLKMLSLGENQ------LSGSLPSQLGVLT-WLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTV 217 (729)
Q Consensus 145 ~~~~~~~l~~L~~L~Ls~N~------l~~~~p~~l~~L~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 217 (729)
.+.+|..+++|+.|.+..+. +...+|+.+..++ +|+.|++.++.+. .+|..| ...+|++|++++|.+. .+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 34567888899999887654 2335677776664 5889999888886 777777 5688999999999887 67
Q ss_pred ccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCC
Q 046589 218 PIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNC 297 (729)
Q Consensus 218 p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l 297 (729)
+..+..+++|+.|+|+++.....+| .+..+++|++|++++|.....+|..+..+++|+.++++.|..-+
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~--------- 695 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE--------- 695 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC---------
Confidence 7888889999999998776444665 36778899999998887666788888888888888876643211
Q ss_pred CCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccC
Q 046589 298 KNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELND 377 (729)
Q Consensus 298 ~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 377 (729)
.+|..+ ++++|+.|++++|...+.+|.. ..+|++|+|++|.+. .+|..+ .
T Consensus 696 ------------------------~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~ 745 (1153)
T PLN03210 696 ------------------------ILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-R 745 (1153)
T ss_pred ------------------------ccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-c
Confidence 223322 4678999999998766666643 457899999999987 456554 5
Q ss_pred CCCCcEEEcCCCCCCCCcccc----ccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCC
Q 046589 378 SESLVEINLDGNMLSGTIEDV----FGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS 453 (729)
Q Consensus 378 l~~L~~L~L~~N~l~~~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 453 (729)
+++|+.|.+.++......... .......++|+.|+|++|...+.+|.+++++++|+.|++++|...+.+|..+ .+
T Consensus 746 l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L 824 (1153)
T PLN03210 746 LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NL 824 (1153)
T ss_pred ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc
Confidence 778888888764322111000 0001124578889999888777788889999999999998876555777765 68
Q ss_pred CCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCC-CcCcccCCc
Q 046589 454 TSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSY-NMLSGPIPK 532 (729)
Q Consensus 454 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~-N~l~g~~p~ 532 (729)
++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|..+. .+++|+.|++++ |++.
T Consensus 825 ~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~------------~l~~L~~L~L~~C~~L~----- 883 (1153)
T PLN03210 825 ESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE------------KFSNLSFLDMNGCNNLQ----- 883 (1153)
T ss_pred cccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh------------cCCCCCEEECCCCCCcC-----
Confidence 88999999987665556543 357888899988886 3444332 567788888887 4443
Q ss_pred hhhccccccccccccccccccCCceeeccCCc
Q 046589 533 ELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNK 564 (729)
Q Consensus 533 ~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~ 564 (729)
.+|..+..++.|+.++++++.
T Consensus 884 -----------~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 884 -----------RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred -----------ccCcccccccCCCeeecCCCc
Confidence 234445567777888887764
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=244.30 Aligned_cols=339 Identities=20% Similarity=0.210 Sum_probs=246.6
Q ss_pred ccCCCCCCCcEEECCCCCC------CCCCcccccCCC-CCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCc
Q 046589 123 PLLFDLSKLRVLNLSQNLL------FGQPSPQVSNLK-RLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPS 195 (729)
Q Consensus 123 ~~l~~L~~L~~L~Ls~N~l------~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~ 195 (729)
..+.++++|+.|.+..+.. ....|..|..++ +|+.|++.++.+. .+|..| ...+|++|++++|++. .+|.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 3567788999998866542 233556666665 6999999998886 778877 4688999999999887 6778
Q ss_pred cccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCc
Q 046589 196 ELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKK 275 (729)
Q Consensus 196 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 275 (729)
.+..+++|++|+|+++.....+|. ++.+++|++|+|++|.....+| ..+..+++|+.|++++|.....+|..+ ++++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccc-hhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 888899999999988765556664 7888899999998876555676 567888999999998876555677665 6788
Q ss_pred CCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcce-------ecCC
Q 046589 276 LSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFI-------GRIP 348 (729)
Q Consensus 276 L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-------~~~p 348 (729)
|+.+.+++|...+.+|.... .+..++++.|.+. .+|..+ .+++|++|.+.++... ...+
T Consensus 706 L~~L~Lsgc~~L~~~p~~~~------------nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDIST------------NISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred CCEEeCCCCCCccccccccC------------CcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccch
Confidence 88888887754433332211 1345666777664 456554 4677888877764321 1112
Q ss_pred CCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCC
Q 046589 349 LEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGN 428 (729)
Q Consensus 349 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 428 (729)
......++|+.|+|++|...+.+|..++++++|+.|++++|...+.+|... ++++|+.|++++|.....+|..
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~----~L~sL~~L~Ls~c~~L~~~p~~--- 844 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI----NLESLESLDLSGCSRLRTFPDI--- 844 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC----CccccCEEECCCCCcccccccc---
Confidence 223334688999999988777888889999999999998876444444432 5778889999987654445543
Q ss_pred CCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCc
Q 046589 429 LRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNN 489 (729)
Q Consensus 429 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~ 489 (729)
.++|+.|+|++|.++ .+|.++..+++|+.|+|++|+--..+|..+..+++|+.++++++.
T Consensus 845 ~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 367889999999887 678888889999999998844334677788888889999988874
|
syringae 6; Provisional |
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-23 Score=198.56 Aligned_cols=100 Identities=26% Similarity=0.503 Sum_probs=87.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||.||.++.+|.+|++|||+++.+.. .+......+||+.||+||......|+.|+||||+||++|||+..++||.++
T Consensus 153 DIKPaNIFl~~~gvvKLGDfGL~r~l~s-~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~ 231 (375)
T KOG0591|consen 153 DIKPANIFLTANGVVKLGDFGLGRFLSS-KTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD 231 (375)
T ss_pred cCcchheEEcCCCceeeccchhHhHhcc-hhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc
Confidence 9999999999999999999999999875 334445679999999999999999999999999999999999999999842
Q ss_pred -------------c----chH------HHHhhcccCCCCCCCCc
Q 046589 705 -------------F----EDK------DIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 705 -------------~----~~~------~l~~~c~~~~p~~Rp~~ 725 (729)
+ .+. +++..|+..+|++||+.
T Consensus 232 n~~~L~~KI~qgd~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t 275 (375)
T KOG0591|consen 232 NLLSLCKKIEQGDYPPLPDEHYSTDLRELINMCIAVDPEQRPDT 275 (375)
T ss_pred cHHHHHHHHHcCCCCCCcHHHhhhHHHHHHHHHccCCcccCCCc
Confidence 1 011 78999999999999983
|
|
| >KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=197.19 Aligned_cols=104 Identities=25% Similarity=0.369 Sum_probs=87.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++..+.+|+||||+|+.+.. .....+....|+||+|||...+ .+|...+||||.||++.||+||.+-+.+
T Consensus 126 DIKPENILit~~gvvKLCDFGFAR~L~~-pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG 204 (396)
T KOG0593|consen 126 DIKPENILITQNGVVKLCDFGFARTLSA-PGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPG 204 (396)
T ss_pred cCChhheEEecCCcEEeccchhhHhhcC-CcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCC
Confidence 9999999999999999999999999874 2345677888999999998776 8899999999999999999999864431
Q ss_pred C--cc-------------hH-------------------------------------HHHhhcccCCCCCCCCccccC
Q 046589 704 K--FE-------------DK-------------------------------------DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~--~~-------------~~-------------------------------------~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .. +. +++..|+..||++|++.++++
T Consensus 205 ~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll 282 (396)
T KOG0593|consen 205 RSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLL 282 (396)
T ss_pred cchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHh
Confidence 0 00 00 799999999999999988753
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-21 Score=219.89 Aligned_cols=264 Identities=28% Similarity=0.342 Sum_probs=139.7
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEcc
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 209 (729)
.-..||++.|.++.+ |+.+. ++|+.|++++|+++ .+|.. +++|++|+|++|+++ .+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~LtsL-P~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCCcC-Ccchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 355666666666643 33332 25666666666666 34532 356666666666666 34432 2456666666
Q ss_pred CCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeecccccccccc
Q 046589 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGS 289 (729)
Q Consensus 210 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~ 289 (729)
+|.++ .+|..+ .+|+.|++++|+++ .+|. .+++|+.|++++|++++ +|... ..|
T Consensus 271 ~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~-Lp~lp---~~L------------- 324 (788)
T PRK15387 271 SNPLT-HLPALP---SGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPALP---SEL------------- 324 (788)
T ss_pred CCchh-hhhhch---hhcCEEECcCCccc-cccc----cccccceeECCCCcccc-CCCCc---ccc-------------
Confidence 66665 333322 34555666666655 3431 23455666666665553 22211 112
Q ss_pred ccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCC
Q 046589 290 IQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG 369 (729)
Q Consensus 290 ~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 369 (729)
+.|++++|++.+ +|.. ..+|++|+|++|+|++
T Consensus 325 --------------------------------------------~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 325 --------------------------------------------CKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS 356 (788)
T ss_pred --------------------------------------------cccccccCcccc-cccc---ccccceEecCCCccCC
Confidence 233333333332 2210 1245555555555553
Q ss_pred CCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcC
Q 046589 370 SIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMR 449 (729)
Q Consensus 370 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 449 (729)
+|.. ..+|+.|++++|+++.. |.. +.+|+.|++++|++++ +|.. .++|+.|++++|+++ .+|..
T Consensus 357 -LP~l---p~~L~~L~Ls~N~L~~L-P~l------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l 420 (788)
T PRK15387 357 -LPTL---PSELYKLWAYNNRLTSL-PAL------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML 420 (788)
T ss_pred -CCCC---CcccceehhhccccccC-ccc------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc
Confidence 2321 23445555555555532 221 1346666777776663 4432 245667777777766 35543
Q ss_pred ccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcccccccc
Q 046589 450 LGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKH 498 (729)
Q Consensus 450 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~ 498 (729)
..+|+.|++++|+++ .+|..+.++++|+.|+|++|+|++.++..+
T Consensus 421 ---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 ---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 235667777777776 567777777777777777777776555443
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-21 Score=218.25 Aligned_cols=266 Identities=27% Similarity=0.321 Sum_probs=171.6
Q ss_pred CcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEee
Q 046589 106 RVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLC 185 (729)
Q Consensus 106 ~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls 185 (729)
.-..++++.+.++ .+|+.+. ++|+.|++++|+++.++. .+++|++|+|++|+|+ .+|.. .++|++|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 3567999999998 6888775 489999999999998642 3579999999999998 56753 4689999999
Q ss_pred ccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccccc
Q 046589 186 SNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGN 265 (729)
Q Consensus 186 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 265 (729)
+|.++ .+|..+ .+|+.|++++|+++ .+|.. .++|+.|++++|+++ .+|. ...+|+.|++++|.+++
T Consensus 271 ~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~----lp~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 271 SNPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS- 336 (788)
T ss_pred CCchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCC----CcccccccccccCcccc-
Confidence 99998 556533 57889999999998 56653 478999999999998 4552 23468888999988873
Q ss_pred CCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCccee
Q 046589 266 IPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIG 345 (729)
Q Consensus 266 ~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 345 (729)
+|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|++..
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls~----------------------------------LP~l---p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLAS----------------------------------LPTL---PSELYKLWAYNNRLTS 376 (788)
T ss_pred cccc---ccccceEecCCCccCC----------------------------------CCCC---Ccccceehhhcccccc
Confidence 4431 1244455554444431 1110 1233444555555442
Q ss_pred cCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcc
Q 046589 346 RIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKE 425 (729)
Q Consensus 346 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 425 (729)
+|.. .++|+.|++ ++|.+++.++ . .++|+.|++++|+++. +|..
T Consensus 377 -LP~l---~~~L~~LdL------------------------s~N~Lt~LP~-l------~s~L~~LdLS~N~Lss-IP~l 420 (788)
T PRK15387 377 -LPAL---PSGLKELIV------------------------SGNRLTSLPV-L------PSELKELMVSGNRLTS-LPML 420 (788)
T ss_pred -Cccc---ccccceEEe------------------------cCCcccCCCC-c------ccCCCEEEccCCcCCC-CCcc
Confidence 3321 123444444 4444443221 1 1245566666666653 4432
Q ss_pred cCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhc
Q 046589 426 IGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIAD 476 (729)
Q Consensus 426 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 476 (729)
..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..
T Consensus 421 ---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 421 ---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 234566666666666 56666666667777777777776666655533
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-22 Score=208.20 Aligned_cols=104 Identities=30% Similarity=0.467 Sum_probs=87.7
Q ss_pred cccccceEecCCc-cEEEeecCCccccCCCCCcceecccccccccCccccC--CCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDF-DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR--ARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~-~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~--~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+|+.|||++.+. ++||+|||+++...... ..++...||+.|||||.+. ...|++|+|||||||++|||+||+.|+
T Consensus 168 DLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~-~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf 246 (362)
T KOG0192|consen 168 DLKSDNILVDLKGKTLKIADFGLSREKVISK-TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPF 246 (362)
T ss_pred ccChhhEEEcCCCCEEEECCCccceeecccc-ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCC
Confidence 9999999999997 99999999998865321 2344578999999999988 568999999999999999999999998
Q ss_pred CC-Ccc----------------h------HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP-KFE----------------D------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~-~~~----------------~------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .-. . ..++..||..+|+.||+|.+++
T Consensus 247 ~~~~~~~~~~~v~~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~ 297 (362)
T KOG0192|consen 247 EDLAPVQVASAVVVGGLRPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIV 297 (362)
T ss_pred CCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHH
Confidence 73 100 0 0789999999999999998864
|
|
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-22 Score=209.34 Aligned_cols=104 Identities=31% Similarity=0.521 Sum_probs=86.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+.++|||++++..+||+||||||...++......+..-++.|+|||.+....++.|+|||||||+|||+.|-.+.++++
T Consensus 328 DLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~ 407 (468)
T KOG0197|consen 328 DLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPG 407 (468)
T ss_pred hhhhhheeeccCceEEEcccccccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCC
Confidence 99999999999999999999999965554444444555667899999999999999999999999999999955554433
Q ss_pred cchH-----------------------HHHhhcccCCCCCCCCcccc
Q 046589 705 FEDK-----------------------DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 705 ~~~~-----------------------~l~~~c~~~~p~~Rp~~~~v 728 (729)
|... ++|..||..+|++||||+.+
T Consensus 408 msn~ev~~~le~GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L 454 (468)
T KOG0197|consen 408 MSNEEVLELLERGYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFETL 454 (468)
T ss_pred CCHHHHHHHHhccCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHH
Confidence 3311 89999999999999999853
|
|
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-21 Score=196.65 Aligned_cols=102 Identities=27% Similarity=0.545 Sum_probs=88.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+|||+...+++||||||.++.+..+ ...+..||..|||||...+..|+.++||||||+.++|+++|+.|+.+.
T Consensus 204 DIKPsNlLvNskGeVKicDFGVS~~lvnS---~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~ 280 (364)
T KOG0581|consen 204 DIKPSNLLVNSKGEVKICDFGVSGILVNS---IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPP 280 (364)
T ss_pred cCCHHHeeeccCCCEEeccccccHHhhhh---hcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCc
Confidence 99999999999999999999999987643 234568899999999999999999999999999999999999986541
Q ss_pred ------c--------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 705 ------F--------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ------~--------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
| .++ .++.+|++.+|++||++++++
T Consensus 281 ~~~~~~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl 333 (364)
T KOG0581|consen 281 NPPYLDIFELLCAIVDEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLL 333 (364)
T ss_pred CCCCCCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHh
Confidence 1 111 799999999999999998863
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-23 Score=206.08 Aligned_cols=288 Identities=23% Similarity=0.214 Sum_probs=181.2
Q ss_pred CCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccC-CCCCCCCccccCCCCCCCeeec
Q 046589 154 RLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSG-NGFNGTVPIRLGELTRLQDLDL 232 (729)
Q Consensus 154 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L 232 (729)
.-..++|..|+|+.+.|..|+.+++|+.|||++|+|+.+-|++|.++.+|..|-+.+ |+|+......|++|.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567788888888877778888888888888888888888888888888888777766 8888555567888888888888
Q ss_pred cCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEE
Q 046589 233 SDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTF 312 (729)
Q Consensus 233 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l 312 (729)
.-|++. .+....|..+++|..|.+..|.+....-..+..+..++.+++..|.+-.. .+++.+..
T Consensus 148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd-----CnL~wla~---------- 211 (498)
T KOG4237|consen 148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD-----CNLPWLAD---------- 211 (498)
T ss_pred Chhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc-----cccchhhh----------
Confidence 888887 67778888888888888888888744444777888888887777764210 11111100
Q ss_pred EccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCC-CCCc-EEEcCCCC
Q 046589 313 SAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDS-ESLV-EINLDGNM 390 (729)
Q Consensus 313 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~-~L~L~~N~ 390 (729)
+... .|..++.. .-..-..+.++++....+..|... .++. .+....+.
T Consensus 212 ~~a~------~~ietsga------------------------rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~ 261 (498)
T KOG4237|consen 212 DLAM------NPIETSGA------------------------RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP 261 (498)
T ss_pred HHhh------chhhcccc------------------------eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc
Confidence 0000 11111111 112222222333322222222111 1111 11111112
Q ss_pred CCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccC
Q 046589 391 LSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSI 470 (729)
Q Consensus 391 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 470 (729)
....+... ++.+++|+.|+|++|+++++-+.+|.++..++.|.|..|++...-...|.++..|+.|+|.+|+|+...
T Consensus 262 d~~cP~~c---f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 262 DSICPAKC---FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred CCcChHHH---HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe
Confidence 21112222 355666777777777777666777777777777777777776555566667777777777777777677
Q ss_pred chhhhcCCCCCEEeCCCCcC
Q 046589 471 PEKIADLAQLQFLDLSYNNL 490 (729)
Q Consensus 471 p~~l~~l~~L~~LdLs~N~l 490 (729)
|..|..+.+|..|+|-.|++
T Consensus 339 ~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cccccccceeeeeehccCcc
Confidence 77777777777777777765
|
|
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-21 Score=203.23 Aligned_cols=135 Identities=27% Similarity=0.462 Sum_probs=118.2
Q ss_pred ccccccCCCCCCcceEEEeec-CCCCceeeec------------------------------------------------
Q 046589 594 KFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 594 ~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~------------------------------------------------ 624 (729)
.+...+++|+|||..||+++. +.|..||+|.
T Consensus 19 ~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivLE 98 (592)
T KOG0575|consen 19 RYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVLE 98 (592)
T ss_pred eeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEEE
Confidence 456778899999999999998 8999999996
Q ss_pred --------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceec
Q 046589 625 --------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTD 660 (729)
Q Consensus 625 --------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~ 660 (729)
|+|-.|+++++++++||+|||+|.....+ .+...+
T Consensus 99 LC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~-~Erk~T 177 (592)
T KOG0575|consen 99 LCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYD-GERKKT 177 (592)
T ss_pred ecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeecCc-ccccce
Confidence 99999999999999999999999887642 233446
Q ss_pred ccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcc---------------------hHHHHhhcccCCC
Q 046589 661 VASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFE---------------------DKDIVVGCVSDNP 719 (729)
Q Consensus 661 ~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~---------------------~~~l~~~c~~~~p 719 (729)
.+||+-|+|||.+.....+..+||||+|||||.|++|++||+..-. ..+++...++++|
T Consensus 178 lCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~~P~~ls~~A~dLI~~lL~~~P 257 (592)
T KOG0575|consen 178 LCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYSMPSHLSAEAKDLIRKLLRPNP 257 (592)
T ss_pred ecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCcccccccCHHHHHHHHHHhcCCc
Confidence 7999999999998888889999999999999999999999984211 1189999999999
Q ss_pred CCCCCccccC
Q 046589 720 IAKPGMLRVQ 729 (729)
Q Consensus 720 ~~Rp~~~~v~ 729 (729)
++|||+++|+
T Consensus 258 ~~Rpsl~~vL 267 (592)
T KOG0575|consen 258 SERPSLDEVL 267 (592)
T ss_pred ccCCCHHHHh
Confidence 9999999985
|
|
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-21 Score=195.98 Aligned_cols=103 Identities=22% Similarity=0.305 Sum_probs=87.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccc-cCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEY-GRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~-~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+|||+.....+||+|||+||.... ....+..+.|+||+|||. +.+..|+.++|+||+||||+|+.+.+.-|.+
T Consensus 135 DlKPENiLi~~~~~iKiaDFGLARev~S--kpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG 212 (538)
T KOG0661|consen 135 DLKPENILISGNDVIKIADFGLAREVRS--KPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPG 212 (538)
T ss_pred cCChhheEecccceeEeccccccccccc--CCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCC
Confidence 9999999999999999999999998764 334677899999999996 4568899999999999999999998866542
Q ss_pred --------------------CcchH-------------------------------HHHhhcccCCCCCCCCccccC
Q 046589 704 --------------------KFEDK-------------------------------DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 --------------------~~~~~-------------------------------~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|.+. .++.+|+++||+.|||+++.+
T Consensus 213 ~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al 289 (538)
T KOG0661|consen 213 ASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQAL 289 (538)
T ss_pred CcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHh
Confidence 12210 799999999999999998753
|
|
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-20 Score=192.51 Aligned_cols=104 Identities=28% Similarity=0.495 Sum_probs=88.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+|+.||++..++.+|++|||++........-. .+..||+.|||||......|+.|+||||+|++.+||++|.+|...
T Consensus 136 DIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr-~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~ 214 (467)
T KOG0201|consen 136 DIKAANILLSESGDVKLADFGVAGQLTNTVKRR-KTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKL 214 (467)
T ss_pred cccccceeEeccCcEEEEecceeeeeechhhcc-ccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCccc
Confidence 999999999999999999999998766432222 457899999999998888999999999999999999999998651
Q ss_pred -------------------Ccch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 -------------------KFED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -------------------~~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|.+ ++++..|+..+|+.||++.+++
T Consensus 215 hPmrvlflIpk~~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LL 261 (467)
T KOG0201|consen 215 HPMRVLFLIPKSAPPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELL 261 (467)
T ss_pred CcceEEEeccCCCCCccccccCHHHHHHHHHHhhcCcccCcCHHHHh
Confidence 1222 1899999999999999998863
|
|
| >KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.3e-21 Score=196.69 Aligned_cols=105 Identities=28% Similarity=0.333 Sum_probs=89.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|||++|||+|.+|.+||+|||||+++..+.....+..+.|.||.|||.+. ...|+..+|+||.||||.||.+|+.++.+
T Consensus 243 DIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G 322 (560)
T KOG0600|consen 243 DIKGSNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQG 322 (560)
T ss_pred cccccceEEcCCCCEEeccccceeeccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCC
Confidence 99999999999999999999999998876666677788899999999654 47899999999999999999999988762
Q ss_pred --------------------CcchH------------------------------HHHhhcccCCCCCCCCccccC
Q 046589 704 --------------------KFEDK------------------------------DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 --------------------~~~~~------------------------------~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|... +|+...++.+|+.|.|+.+++
T Consensus 323 ~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL 398 (560)
T KOG0600|consen 323 RTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSAL 398 (560)
T ss_pred ccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHh
Confidence 23200 688899999999999988764
|
|
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-20 Score=190.08 Aligned_cols=133 Identities=27% Similarity=0.439 Sum_probs=113.4
Q ss_pred CCcccccccCCCCCCcceEEEeec-CCCCceeeec---------------------------------------------
Q 046589 591 GNNKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK--------------------------------------------- 624 (729)
Q Consensus 591 g~~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~--------------------------------------------- 624 (729)
+.++|...+.||.|+||+||.++- .+++.+|+|.
T Consensus 23 ~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLyl 102 (357)
T KOG0598|consen 23 GPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYL 102 (357)
T ss_pred ChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEE
Confidence 357888899999999999999987 5888999985
Q ss_pred -----------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcc
Q 046589 625 -----------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHI 657 (729)
Q Consensus 625 -----------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~ 657 (729)
|+||+|||+|.+|+++++|||+++.....+ ..
T Consensus 103 Vld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~-~~ 181 (357)
T KOG0598|consen 103 VLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDG-DA 181 (357)
T ss_pred EEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchhcccCC-Cc
Confidence 999999999999999999999999754322 22
Q ss_pred eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--------------------cchH--HHHhhcc
Q 046589 658 STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK--------------------FEDK--DIVVGCV 715 (729)
Q Consensus 658 ~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~--------------------~~~~--~l~~~c~ 715 (729)
..+.+||+-|||||+.....|+..+|+||+||++|||++|.+||... |..+ +++..-+
T Consensus 182 t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k~~~~p~~ls~~ardll~~LL 261 (357)
T KOG0598|consen 182 TRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGKLPLPPGYLSEEARDLLKKLL 261 (357)
T ss_pred cccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCcCCCCCccCCHHHHHHHHHHh
Confidence 33568999999999999999999999999999999999999998731 1111 7999999
Q ss_pred cCCCCCCCC
Q 046589 716 SDNPIAKPG 724 (729)
Q Consensus 716 ~~~p~~Rp~ 724 (729)
..+|++|-.
T Consensus 262 ~rdp~~RLg 270 (357)
T KOG0598|consen 262 KRDPRQRLG 270 (357)
T ss_pred ccCHHHhcC
Confidence 999999963
|
|
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-20 Score=198.44 Aligned_cols=105 Identities=25% Similarity=0.427 Sum_probs=83.3
Q ss_pred cccccceEecCCccEEEeecCCccccCC-CCCcceecccccccccCccccC---CCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISD-CKSHISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~-~~~~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+|+.||++++++.+||+|||++..... .+........+..-|||||... ..+|+..+||||||||+|||+||..|
T Consensus 513 DLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lP 592 (678)
T KOG0193|consen 513 DLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELP 592 (678)
T ss_pred hccccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCC
Confidence 9999999999999999999999865321 1112223456777899999654 46889999999999999999999999
Q ss_pred CCCC--------------cc------------hHHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPK--------------FE------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~--------------~~------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+... +. ..+|+..||..++++||.+.+++
T Consensus 593 ysi~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il 647 (678)
T KOG0193|consen 593 YSIQNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLL 647 (678)
T ss_pred cCCCChhheEEEecccccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHH
Confidence 7621 00 11899999999999999998763
|
|
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8e-21 Score=198.07 Aligned_cols=103 Identities=27% Similarity=0.487 Sum_probs=87.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+|+-|||+..+-.+||+|||-++..... .+.-..+||+.|||||.....+.++|+||||||||+|||+||..|+.-
T Consensus 237 DLKSPNiLIs~~d~VKIsDFGTS~e~~~~--STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdV 314 (904)
T KOG4721|consen 237 DLKSPNILISYDDVVKISDFGTSKELSDK--STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDV 314 (904)
T ss_pred ccCCCceEeeccceEEeccccchHhhhhh--hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCcccc
Confidence 99999999999999999999999887642 223346899999999999999999999999999999999999999641
Q ss_pred -----Ccc--------------hH---HHHhhcccCCCCCCCCccccC
Q 046589 704 -----KFE--------------DK---DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -----~~~--------------~~---~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
-|. ++ -++..||+..|+.||+|++++
T Consensus 315 dssAIIwGVGsNsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil 362 (904)
T KOG4721|consen 315 DSSAIIWGVGSNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQIL 362 (904)
T ss_pred chheeEEeccCCcccccCcccCchHHHHHHHHHHhcCCCCCccHHHHH
Confidence 011 11 588999999999999999863
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-19 Score=208.31 Aligned_cols=246 Identities=25% Similarity=0.375 Sum_probs=127.3
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEcc
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 209 (729)
+..+|++++++++.++ ..+ .++|+.|+|++|+|+ .+|..+. .+|++|++++|+++ .+|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~LtsLP-~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIP-ACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCC-ccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 3445555555555432 222 124555555555555 3444332 35555555555555 3444332 245556666
Q ss_pred CCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeecccccccccc
Q 046589 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGS 289 (729)
Q Consensus 210 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~ 289 (729)
+|++. .+|..+. .+|++|++++|+++ .+|.. + .++|+.|++++|+++. +|..+. ..|+.++++.|.++.
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~-l--~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPEN-L--PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccc-c--CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence 66555 4444433 35566666666655 34422 1 1356666666666653 333322 234555555554431
Q ss_pred ccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCC
Q 046589 290 IQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG 369 (729)
Q Consensus 290 ~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 369 (729)
+ |..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++
T Consensus 319 L---------------------------------P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~- 359 (754)
T PRK15370 319 L---------------------------------PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT- 359 (754)
T ss_pred C---------------------------------Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-
Confidence 1 1111 1345556666666553 343332 46677777777766
Q ss_pred CCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCc----ccCCCCCCCEEEccCCccc
Q 046589 370 SIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPK----EIGNLRSIQILKLNSNFFN 443 (729)
Q Consensus 370 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~ 443 (729)
.+|..+ .++|+.|++++|.++..++... ..|+.|++++|+++ .+|. ....++++..|++.+|.++
T Consensus 360 ~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~------~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 360 VLPETL--PPTITTLDVSRNALTNLPENLP------AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCChhh--cCCcCEEECCCCcCCCCCHhHH------HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 344443 2467777777777765443321 24666777777776 3443 3344567777777777765
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-20 Score=208.61 Aligned_cols=117 Identities=27% Similarity=0.374 Sum_probs=50.0
Q ss_pred cEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeec
Q 046589 107 VVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186 (729)
Q Consensus 107 ~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 186 (729)
...++++.+.++ .+|..+. ++|+.|+|++|+++.++.. +. ++|+.|++++|+++ .+|..+. .+|+.|+|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~~-l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPEN-LQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCChh-hc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 344444444444 2333221 2445555555554433221 11 24455555555544 3343332 2345555555
Q ss_pred cCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCC
Q 046589 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLS 238 (729)
Q Consensus 187 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 238 (729)
|++. .+|..+. .+|+.|++++|+++ .+|..+. .+|++|++++|+++
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 5544 3343332 24455555555544 3343332 24555555555444
|
|
| >KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-19 Score=173.92 Aligned_cols=104 Identities=24% Similarity=0.372 Sum_probs=84.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+|+|+++++..|++|||+|+...+. ....+....|+||+|||.+. ..+|...+||||.|||+.||+-|.+-+.+
T Consensus 126 DlKPnNLLis~~g~lKiADFGLAr~f~~p-~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG 204 (318)
T KOG0659|consen 126 DLKPNNLLISSDGQLKIADFGLARFFGSP-NRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPG 204 (318)
T ss_pred cCCccceEEcCCCcEEeecccchhccCCC-CcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCC
Confidence 99999999999999999999999997642 22334447789999999654 57899999999999999999977654331
Q ss_pred --------------------CcchH-----------------------------HHHhhcccCCCCCCCCccccC
Q 046589 704 --------------------KFEDK-----------------------------DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 --------------------~~~~~-----------------------------~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|.+. +++..++..+|.+|.|+.|++
T Consensus 205 ~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL 279 (318)
T KOG0659|consen 205 DSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQAL 279 (318)
T ss_pred CchHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHh
Confidence 23311 789999999999999998763
|
|
| >KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-20 Score=211.13 Aligned_cols=105 Identities=26% Similarity=0.434 Sum_probs=86.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecc-cccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDV-ASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~-~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+.++|+|++....+||+|||||+.....+....... --+..|||||.+....++.|+|||||||++||++|...++++
T Consensus 827 DLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~ 906 (1025)
T KOG1095|consen 827 DLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYP 906 (1025)
T ss_pred chhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999996654444333333 345789999999999999999999999999999996666553
Q ss_pred Ccch--------------------H---HHHhhcccCCCCCCCCccccC
Q 046589 704 KFED--------------------K---DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~~--------------------~---~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.... + +||..||+.+|++||+|..++
T Consensus 907 ~~~n~~v~~~~~~ggRL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~ 955 (1025)
T KOG1095|consen 907 SRSNFEVLLDVLEGGRLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIV 955 (1025)
T ss_pred CcchHHHHHHHHhCCccCCCCCCChHHHHHHHHHccCChhhCccHHHHH
Confidence 2110 0 899999999999999998764
|
|
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.3e-20 Score=185.15 Aligned_cols=76 Identities=25% Similarity=0.492 Sum_probs=68.0
Q ss_pred cccccceEecCC------ccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNED------FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~------~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||.|||++.. -..||+|||+||.+.. .....+.+|++-|||||....++|+.|+|.||.|+|+||+++|+
T Consensus 134 DLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~--~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~ 211 (429)
T KOG0595|consen 134 DLKPQNILLSTTARNDTSPVLKIADFGFARFLQP--GSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGK 211 (429)
T ss_pred cCCcceEEeccCCCCCCCceEEecccchhhhCCc--hhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCC
Confidence 999999999864 5689999999999874 22345678999999999999999999999999999999999999
Q ss_pred CCCC
Q 046589 699 QPTG 702 (729)
Q Consensus 699 ~p~~ 702 (729)
.||+
T Consensus 212 ~Pf~ 215 (429)
T KOG0595|consen 212 PPFD 215 (429)
T ss_pred CCcc
Confidence 9998
|
|
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-19 Score=193.18 Aligned_cols=132 Identities=23% Similarity=0.375 Sum_probs=115.7
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|.-..++|+|+||+|+.+++. +++.+|||.
T Consensus 368 ~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~fv 447 (694)
T KOG0694|consen 368 DDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFFV 447 (694)
T ss_pred cceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEEE
Confidence 67778889999999999999995 778999996
Q ss_pred ---------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCccee
Q 046589 625 ---------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST 659 (729)
Q Consensus 625 ---------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~ 659 (729)
|+|-.|||||.+|++||+||||++.....+ ..+.
T Consensus 448 mey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g-~~Ts 526 (694)
T KOG0694|consen 448 MEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQG-DRTS 526 (694)
T ss_pred EEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccccCCCC-Cccc
Confidence 999999999999999999999999754322 2345
Q ss_pred cccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcchH---------------------HHHhhcccCC
Q 046589 660 DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFEDK---------------------DIVVGCVSDN 718 (729)
Q Consensus 660 ~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~~~---------------------~l~~~c~~~~ 718 (729)
+.+||+-|||||.+....|+..+|+|||||+||||++|..||.++-+++ .++.+.+..+
T Consensus 527 TfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~FdsI~~d~~~yP~~ls~ea~~il~~ll~k~ 606 (694)
T KOG0694|consen 527 TFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSKEAIAIMRRLLRKN 606 (694)
T ss_pred cccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCCCCCCcccHHHHHHHHHHhccC
Confidence 6799999999999999999999999999999999999999998532222 7999999999
Q ss_pred CCCCCCc
Q 046589 719 PIAKPGM 725 (729)
Q Consensus 719 p~~Rp~~ 725 (729)
|+.|-.+
T Consensus 607 p~kRLG~ 613 (694)
T KOG0694|consen 607 PEKRLGS 613 (694)
T ss_pred cccccCC
Confidence 9999887
|
|
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.3e-20 Score=190.79 Aligned_cols=103 Identities=25% Similarity=0.440 Sum_probs=89.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+||.|||++..+++|+||||+||.+.. .+...+.+.||+-|||||....+.|+..+|.||+|||+||+.+|++||..
T Consensus 125 d~kPqniLl~~~~~~KlcdFg~Ar~m~~-~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~ 203 (808)
T KOG0597|consen 125 DMKPQNILLEKGGTLKLCDFGLARAMST-NTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYAR 203 (808)
T ss_pred cCCcceeeecCCCceeechhhhhhhccc-CceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHH
Confidence 9999999999999999999999999875 45566778999999999999899999999999999999999999999872
Q ss_pred --------------CcchH------HHHhhcccCCCCCCCCcccc
Q 046589 704 --------------KFEDK------DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 --------------~~~~~------~l~~~c~~~~p~~Rp~~~~v 728 (729)
.|... .+...-+..||.+|-|..++
T Consensus 204 si~~Lv~~I~~d~v~~p~~~S~~f~nfl~gLL~kdP~~RltW~~L 248 (808)
T KOG0597|consen 204 SITQLVKSILKDPVKPPSTASSSFVNFLQGLLIKDPAQRLTWTDL 248 (808)
T ss_pred HHHHHHHHHhcCCCCCcccccHHHHHHHHHHhhcChhhcccHHHH
Confidence 23221 67888899999999887654
|
|
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-19 Score=170.81 Aligned_cols=102 Identities=30% Similarity=0.536 Sum_probs=85.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC---CCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+|||+|+.|.+|+||||++..+..+..++ ..+|...|||||... .-.|+.++||||||+.++||+||+.|+
T Consensus 217 DvKPSNILlDe~GniKlCDFGIsGrlvdSkAht--rsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy 294 (391)
T KOG0983|consen 217 DVKPSNILLDERGNIKLCDFGISGRLVDSKAHT--RSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPY 294 (391)
T ss_pred ccCccceEEccCCCEEeecccccceeecccccc--cccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCC
Confidence 999999999999999999999998877655443 346778999999765 357899999999999999999999998
Q ss_pred CC---Ccc--------------------hH--HHHhhcccCCCCCCCCcccc
Q 046589 702 GP---KFE--------------------DK--DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 702 ~~---~~~--------------------~~--~l~~~c~~~~p~~Rp~~~~v 728 (729)
.+ ++. +. +++..|+..|+..||.-.++
T Consensus 295 ~~c~tdFe~ltkvln~ePP~L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~L 346 (391)
T KOG0983|consen 295 KGCKTDFEVLTKVLNEEPPLLPGHMGFSPDFQSFVKDCLTKDHRKRPKYNKL 346 (391)
T ss_pred CCCCccHHHHHHHHhcCCCCCCcccCcCHHHHHHHHHHhhcCcccCcchHHH
Confidence 74 111 11 79999999999999987664
|
|
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-19 Score=186.56 Aligned_cols=138 Identities=25% Similarity=0.455 Sum_probs=117.0
Q ss_pred CCcccccccCCCCCCcceEEEeec-CCCCceeeec---------------------------------------------
Q 046589 591 GNNKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK--------------------------------------------- 624 (729)
Q Consensus 591 g~~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~--------------------------------------------- 624 (729)
+-.+|.-...+|+|+|++||+|+- .+++.+|||.
T Consensus 71 ~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLY 150 (604)
T KOG0592|consen 71 TPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLY 150 (604)
T ss_pred ChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceE
Confidence 347788888999999999999986 5888999986
Q ss_pred ------------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCc
Q 046589 625 ------------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSH 656 (729)
Q Consensus 625 ------------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~ 656 (729)
|+||+|||+|++++.+|+|||-|+.+.+....
T Consensus 151 FvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~ 230 (604)
T KOG0592|consen 151 FVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKS 230 (604)
T ss_pred EEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCChhhcc
Confidence 99999999999999999999999987642211
Q ss_pred ----------ce--ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC--C-------------cch--
Q 046589 657 ----------IS--TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP--K-------------FED-- 707 (729)
Q Consensus 657 ----------~~--~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~--~-------------~~~-- 707 (729)
.. ...+||..|.+||.+.....+..+|+|+||||+|+|+.|++||.. + |.+
T Consensus 231 ~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~~l~y~fp~~f 310 (604)
T KOG0592|consen 231 QENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQALDYEFPEGF 310 (604)
T ss_pred ccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHhcccCCCCC
Confidence 01 235788999999999999999999999999999999999999873 1 111
Q ss_pred ----HHHHhhcccCCCCCCCCcccc
Q 046589 708 ----KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 708 ----~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.+|+.+-+..+|.+|+|.+++
T Consensus 311 p~~a~dLv~KLLv~dp~~Rlt~~qI 335 (604)
T KOG0592|consen 311 PEDARDLIKKLLVRDPSDRLTSQQI 335 (604)
T ss_pred CHHHHHHHHHHHccCccccccHHHH
Confidence 189999999999999998775
|
|
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-19 Score=187.67 Aligned_cols=136 Identities=27% Similarity=0.462 Sum_probs=112.3
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
..+.....||+||.+.|||+...+.+.+|+|+
T Consensus 361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE 440 (677)
T KOG0596|consen 361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVME 440 (677)
T ss_pred chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEee
Confidence 44556677999999999999999989999987
Q ss_pred --------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCccee-
Q 046589 625 --------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST- 659 (729)
Q Consensus 625 --------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~- 659 (729)
|+||.|+|+ -.|.+|+.|||+|+.+..+.+....
T Consensus 441 ~Gd~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLl-VkG~LKLIDFGIA~aI~~DTTsI~kd 519 (677)
T KOG0596|consen 441 CGDIDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLL-VKGRLKLIDFGIANAIQPDTTSIVKD 519 (677)
T ss_pred cccccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEE-EeeeEEeeeechhcccCccccceeec
Confidence 999999988 5788999999999988765544333
Q ss_pred cccccccccCccccCC-----------CCCCchhhHHHHHHHHHHHHhCCCCCCC---Cc--------------------
Q 046589 660 DVASAISYVPPEYGRA-----------RKANERDNIYRFGVVLLELVIRKQPTGP---KF-------------------- 705 (729)
Q Consensus 660 ~~~~~~~y~ape~~~~-----------~~~~~~~Dv~s~G~vl~el~tg~~p~~~---~~-------------------- 705 (729)
..+||+.||+||.+.. .+++.++||||+|||+|+|+.|+.||.- .|
T Consensus 520 sQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp~~~~ 599 (677)
T KOG0596|consen 520 SQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAITDPNHEIEFPDIPE 599 (677)
T ss_pred cccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhcCCCccccccCCCC
Confidence 5689999999995432 2367899999999999999999999861 11
Q ss_pred --chHHHHhhcccCCCCCCCCccccC
Q 046589 706 --EDKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 706 --~~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..-++|.+|+++||.+||++.+++
T Consensus 600 ~~~li~~mK~CL~rdPkkR~si~eLL 625 (677)
T KOG0596|consen 600 NDELIDVMKCCLARDPKKRWSIPELL 625 (677)
T ss_pred chHHHHHHHHHHhcCcccCCCcHHHh
Confidence 112899999999999999998874
|
|
| >KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-19 Score=177.53 Aligned_cols=105 Identities=26% Similarity=0.374 Sum_probs=87.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCC-CCcceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDC-KSHISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~-~~~~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+|++++.+...||+|||+|+..... .+.-++....|.||.|||.+. ...|+..+||||.|||+.||++|+.-|.
T Consensus 150 DLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFp 229 (359)
T KOG0660|consen 150 DLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFP 229 (359)
T ss_pred ccchhheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCC
Confidence 99999999999999999999999987532 123356778899999999764 4789999999999999999999997765
Q ss_pred C-Ccch--------------H-------------------------------------HHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFED--------------K-------------------------------------DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~~--------------~-------------------------------------~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+ +... + +++.+++..||.+|+|++|.+
T Consensus 230 G~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL 308 (359)
T KOG0660|consen 230 GKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEAL 308 (359)
T ss_pred CCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHh
Confidence 2 1110 0 799999999999999999864
|
|
| >KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-19 Score=177.55 Aligned_cols=103 Identities=22% Similarity=0.306 Sum_probs=84.2
Q ss_pred cccccceEecCC-ccEEEeecCCccccCCCCCcceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNED-FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~-~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||.|+|+|.+ +.+||||||-|+...+.+.. .....++.|+|||... ...|+.+.||||.||||.||+-|+.-|.
T Consensus 150 DIKPqNlLvD~~tg~LKicDFGSAK~L~~~epn--iSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFp 227 (364)
T KOG0658|consen 150 DIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPN--ISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFP 227 (364)
T ss_pred CCChheEEEcCCCCeEEeccCCcceeeccCCCc--eeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccC
Confidence 999999999965 99999999999998764443 3567789999999654 4789999999999999999999987665
Q ss_pred CC----------------------------------------cch--------H--HHHhhcccCCCCCCCCccccC
Q 046589 703 PK----------------------------------------FED--------K--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~----------------------------------------~~~--------~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
++ |.+ + +++.+++..+|..|.++.|++
T Consensus 228 G~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l 304 (364)
T KOG0658|consen 228 GDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEAL 304 (364)
T ss_pred CCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHh
Confidence 21 100 0 799999999999999887653
|
|
| >KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-19 Score=173.57 Aligned_cols=109 Identities=28% Similarity=0.415 Sum_probs=94.4
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+.|...+-|++|+||.||||+.. +.+.||+||
T Consensus 76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~V 155 (419)
T KOG0663|consen 76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIV 155 (419)
T ss_pred HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeee
Confidence 45666778999999999999984 888999998
Q ss_pred ----------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcce
Q 046589 625 ----------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS 658 (729)
Q Consensus 625 ----------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~ 658 (729)
|+|++|+|+...|..||+|||+||.+.. ....+
T Consensus 156 Me~~EhDLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygs-p~k~~ 234 (419)
T KOG0663|consen 156 MEYVEHDLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGS-PLKPY 234 (419)
T ss_pred HHHHHhhHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhhhhcC-CcccC
Confidence 9999999999999999999999998764 23346
Q ss_pred ecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 659 TDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 659 ~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
+....|.||+|||.+- ...|++.+|+||+||||.|++++++-+.
T Consensus 235 T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~ 279 (419)
T KOG0663|consen 235 TPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFP 279 (419)
T ss_pred cceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCC
Confidence 6778899999999755 4678999999999999999999987654
|
|
| >KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-19 Score=186.31 Aligned_cols=104 Identities=24% Similarity=0.437 Sum_probs=85.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+.++|.|+.++..+||+|||+++++..+..+.-.+..-++.|+|||.+....++.|+|||+|||++||+.| |+.|+.+
T Consensus 390 DLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPG 469 (1157)
T KOG4278|consen 390 DLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPG 469 (1157)
T ss_pred hhhhhhccccccceEEeeccchhhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999999999999999988644332223344568999998888889999999999999999998 7777542
Q ss_pred -C-------------cchH--------HHHhhcccCCCCCCCCcccc
Q 046589 704 -K-------------FEDK--------DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 -~-------------~~~~--------~l~~~c~~~~p~~Rp~~~~v 728 (729)
+ |... ++|.+||.++|++||+|+|+
T Consensus 470 idlSqVY~LLEkgyRM~~PeGCPpkVYeLMraCW~WsPsDRPsFaei 516 (1157)
T KOG4278|consen 470 IDLSQVYGLLEKGYRMDGPEGCPPKVYELMRACWNWSPSDRPSFAEI 516 (1157)
T ss_pred ccHHHHHHHHhccccccCCCCCCHHHHHHHHHHhcCCcccCccHHHH
Confidence 1 1100 89999999999999999875
|
|
| >KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-19 Score=199.91 Aligned_cols=104 Identities=28% Similarity=0.465 Sum_probs=87.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCccee-cccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST-DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~-~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+.++|.|+.++..+||+||||+|.....+..... ...-+++|||||.....++++++|||||||||||+.| |+.|.+
T Consensus 628 DLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~ 707 (774)
T KOG1026|consen 628 DLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYY 707 (774)
T ss_pred chhhhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCccc
Confidence 99999999999999999999999987755544333 4456789999999888999999999999999999987 888876
Q ss_pred CCcchH----------------------HHHhhcccCCCCCCCCcccc
Q 046589 703 PKFEDK----------------------DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 703 ~~~~~~----------------------~l~~~c~~~~p~~Rp~~~~v 728 (729)
+--.++ +||..||..+|.+||+|.||
T Consensus 708 glSn~EVIe~i~~g~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI 755 (774)
T KOG1026|consen 708 GLSNQEVIECIRAGQLLSCPENCPTEVYSLMLECWNENPKRRPSFKEI 755 (774)
T ss_pred ccchHHHHHHHHcCCcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHH
Confidence 310000 89999999999999999886
|
|
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.2e-19 Score=196.06 Aligned_cols=105 Identities=29% Similarity=0.499 Sum_probs=86.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+||+|||+++....... .......++.+|+|||......++.++|||||||++|||+||+.|+..
T Consensus 168 DLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~ 247 (496)
T PTZ00283 168 DIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDG 247 (496)
T ss_pred CCCHHHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence 9999999999999999999999987543211 122345688999999998888899999999999999999999999863
Q ss_pred C-cc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K-FE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~-~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .. + .+++..|+..+|++||++++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell 295 (496)
T PTZ00283 248 ENMEEVMHKTLAGRYDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLL 295 (496)
T ss_pred CCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHH
Confidence 1 10 0 1799999999999999998863
|
|
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-19 Score=183.05 Aligned_cols=99 Identities=24% Similarity=0.405 Sum_probs=82.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.++++|||+++...... ......++.+|+|||......++.++|||||||++|||++|+.|+...
T Consensus 127 dikp~Nill~~~~~~kl~Dfg~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~ 204 (285)
T cd05631 127 DLKPENILLDDRGHIRISDLGLAVQIPEGE--TVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKR 204 (285)
T ss_pred CCCHHHEEECCCCCEEEeeCCCcEEcCCCC--eecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999998754211 123456789999999988888999999999999999999999998631
Q ss_pred cc-----------------------h--HHHHhhcccCCCCCCCCc
Q 046589 705 FE-----------------------D--KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 705 ~~-----------------------~--~~l~~~c~~~~p~~Rp~~ 725 (729)
-. + .+++.+|+..+|++||++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~ 250 (285)
T cd05631 205 KERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLGC 250 (285)
T ss_pred CcchhHHHHHHHhhcccccCCccCCHHHHHHHHHHhhcCHHHhcCC
Confidence 00 0 079999999999999983
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-18 Score=181.07 Aligned_cols=105 Identities=22% Similarity=0.215 Sum_probs=85.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++..............++.+|+|||...+..++.++||||+||++|||++|+.|+...
T Consensus 125 dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~ 204 (287)
T cd07848 125 DIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGE 204 (287)
T ss_pred CCCHHHEEEcCCCcEEEeeccCcccccccccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999876432222223456788999999887778899999999999999999999887420
Q ss_pred -c--------------------------------------------------c--hHHHHhhcccCCCCCCCCccccC
Q 046589 705 -F--------------------------------------------------E--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 -~--------------------------------------------------~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. . -.+++.+|+..+|++|||+++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l 282 (287)
T cd07848 205 SEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCL 282 (287)
T ss_pred CHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 0 0 01699999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-19 Score=173.07 Aligned_cols=101 Identities=25% Similarity=0.427 Sum_probs=82.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC--CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA--RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~--~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+|||+|..|.+|+||||++..+..+ -..+..+|...|||||.... ..|+-++||||+|+.+||++||+.|..
T Consensus 193 DvKPSNILldr~G~vKLCDFGIcGqLv~S--iAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr 270 (361)
T KOG1006|consen 193 DVKPSNILLDRHGDVKLCDFGICGQLVDS--IAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYR 270 (361)
T ss_pred cCChhheEEecCCCEeeecccchHhHHHH--HHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcc
Confidence 99999999999999999999988765431 22344577889999997643 458999999999999999999999965
Q ss_pred CCcchH-----------------------------HHHhhcccCCCCCCCCcccc
Q 046589 703 PKFEDK-----------------------------DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 703 ~~~~~~-----------------------------~l~~~c~~~~p~~Rp~~~~v 728 (729)
. |... +++..|+-.+-+.||...++
T Consensus 271 ~-w~svfeql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~L 324 (361)
T KOG1006|consen 271 K-WDSVFEQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDL 324 (361)
T ss_pred h-HHHHHHHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhhcccccCcchhhh
Confidence 2 3210 78899999999999998764
|
|
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-18 Score=181.88 Aligned_cols=101 Identities=24% Similarity=0.410 Sum_probs=83.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC--CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA--RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~--~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++...... ....++..|+|||.... ..++.++|||||||++|||+||+.|+.
T Consensus 148 dlkp~nill~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~ 223 (283)
T PHA02988 148 NLTSVSFLVTENYKLKIICHGLEKILSSPP----FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFE 223 (283)
T ss_pred cCChhhEEECCCCcEEEcccchHhhhcccc----ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCC
Confidence 999999999999999999999998654211 12356788999998765 678999999999999999999999986
Q ss_pred CC-cc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PK-FE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~-~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .. + .+++.+||+.+|++||||++|+
T Consensus 224 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell 273 (283)
T PHA02988 224 NLTTKEIYDLIINKNNSLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEIL 273 (283)
T ss_pred CCCHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHH
Confidence 21 00 0 0899999999999999999874
|
|
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-19 Score=181.06 Aligned_cols=132 Identities=28% Similarity=0.458 Sum_probs=112.3
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+.|..-.++|.||||.||-++.. +|+++|.|+
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVL 264 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVL 264 (591)
T ss_pred cceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEE
Confidence 56777889999999999999885 899999986
Q ss_pred -----------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcc
Q 046589 625 -----------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHI 657 (729)
Q Consensus 625 -----------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~ 657 (729)
|+||+|||+|+.|+++|+|+|+|..+...+..
T Consensus 265 tlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~~- 343 (591)
T KOG0986|consen 265 TLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKPI- 343 (591)
T ss_pred EeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEecCCCCcc-
Confidence 99999999999999999999999988754433
Q ss_pred eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-----Ccch------------------H--HHHh
Q 046589 658 STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP-----KFED------------------K--DIVV 712 (729)
Q Consensus 658 ~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~-----~~~~------------------~--~l~~ 712 (729)
...+||.||||||......|+..+|+||+||++|||+.|+.||.. .|.+ + ++..
T Consensus 344 -~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~~~ey~~kFS~eakslc~ 422 (591)
T KOG0986|consen 344 -RGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLEDPEEYSDKFSEEAKSLCE 422 (591)
T ss_pred -ccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcchhhcccccCHHHHHHHH
Confidence 344899999999999998899999999999999999999999872 2210 0 5777
Q ss_pred hcccCCCCCCCCcc
Q 046589 713 GCVSDNPIAKPGML 726 (729)
Q Consensus 713 ~c~~~~p~~Rp~~~ 726 (729)
.-+..+|.+|-..+
T Consensus 423 ~LL~Kdp~~RLGcr 436 (591)
T KOG0986|consen 423 GLLTKDPEKRLGCR 436 (591)
T ss_pred HHHccCHHHhccCC
Confidence 77888998887654
|
|
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-18 Score=176.84 Aligned_cols=104 Identities=22% Similarity=0.423 Sum_probs=85.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce----ecccccccccCccccC--CCCCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS----TDVASAISYVPPEYGR--ARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~----~~~~~~~~y~ape~~~--~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+|+.|||+|.+|.+|++|||.+..+...+ +.. .+..++++|||||... -..|+.|+||||||+...||++|.
T Consensus 151 dvKAgnILi~~dG~VkLadFgvsa~l~~~G-~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~ 229 (516)
T KOG0582|consen 151 DVKAGNILIDSDGTVKLADFGVSASLFDSG-DRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGH 229 (516)
T ss_pred ccccccEEEcCCCcEEEcCceeeeeecccC-ceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCC
Confidence 999999999999999999999887766433 222 2458899999999833 367999999999999999999999
Q ss_pred CCCCC--Ccc-------------------hH----------HHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGP--KFE-------------------DK----------DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~--~~~-------------------~~----------~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.||.. .+. .+ +++..|+..||+.|||+++++
T Consensus 230 aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLl 291 (516)
T KOG0582|consen 230 APFSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLL 291 (516)
T ss_pred CCcccCChHHHHHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHh
Confidence 99862 111 01 799999999999999998763
|
|
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-18 Score=182.01 Aligned_cols=133 Identities=24% Similarity=0.396 Sum_probs=109.2
Q ss_pred CCcccccccCCCCCCcceEEEeec-CCCCceeeec---------------------------------------------
Q 046589 591 GNNKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK--------------------------------------------- 624 (729)
Q Consensus 591 g~~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~--------------------------------------------- 624 (729)
+.++|.....||+|+||.||.|+= .+|..+|+|.
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYL 218 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYL 218 (550)
T ss_pred CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEE
Confidence 347888889999999999999986 4889999996
Q ss_pred -----------------------------------------------cccccceEecCCccEEEeecCCccccCCC----
Q 046589 625 -----------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDC---- 653 (729)
Q Consensus 625 -----------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~---- 653 (729)
||||.|+|+|..|+.|++|||++......
T Consensus 219 iMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~ 298 (550)
T KOG0605|consen 219 IMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIE 298 (550)
T ss_pred EEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccchhhhhhhhh
Confidence 99999999999999999999998643210
Q ss_pred ------------------CCc-----cee-------------------cccccccccCccccCCCCCCchhhHHHHHHHH
Q 046589 654 ------------------KSH-----IST-------------------DVASAISYVPPEYGRARKANERDNIYRFGVVL 691 (729)
Q Consensus 654 ------------------~~~-----~~~-------------------~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl 691 (729)
+.. ..+ ..+||+-|||||.+.+..|+..+|+||+||||
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~Im 378 (550)
T KOG0605|consen 299 SYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIM 378 (550)
T ss_pred hhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHH
Confidence 000 000 14788999999999988899999999999999
Q ss_pred HHHHhCCCCCCCC-----------cch--------------HHHHhhcccCCCCCCCC
Q 046589 692 LELVIRKQPTGPK-----------FED--------------KDIVVGCVSDNPIAKPG 724 (729)
Q Consensus 692 ~el~tg~~p~~~~-----------~~~--------------~~l~~~c~~~~p~~Rp~ 724 (729)
|||+.|-+||..+ |.. .+++.+|++ +|++|-.
T Consensus 379 yEmLvGyPPF~s~tp~~T~rkI~nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RLG 435 (550)
T KOG0605|consen 379 YEMLVGYPPFCSETPQETYRKIVNWRETLKFPEEVDLSDEAKDLITRLLC-DPENRLG 435 (550)
T ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhcC
Confidence 9999999999732 221 179999999 9999975
|
|
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-18 Score=182.31 Aligned_cols=105 Identities=22% Similarity=0.338 Sum_probs=84.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce-ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS-TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~-~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++.......... .....+..|+|||+.....++.++|||||||++||++| |+.|+.
T Consensus 134 dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~ 213 (316)
T cd05108 134 DLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 213 (316)
T ss_pred ccchhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999987653222111 12234567999999888888999999999999999998 888875
Q ss_pred C-Ccc---------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFE---------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~---------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... -.+++..||..+|+.||++.+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~ 262 (316)
T cd05108 214 GIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 262 (316)
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 3 110 01789999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-19 Score=179.87 Aligned_cols=103 Identities=26% Similarity=0.409 Sum_probs=85.9
Q ss_pred cccccceEecCC---ccEEEeecCCccccCCCCCcceecccccccccCccccCCC---CCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNED---FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR---KANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~---~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~---~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||+|||+..+ ..+||+|||+|+... ....+.+.+||+.|.|||...+. .+..|+|+||+|||+|-+++|.
T Consensus 301 DiKPeNILl~~~~e~~llKItDFGlAK~~g--~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~ 378 (475)
T KOG0615|consen 301 DIKPENILLSNDAEDCLLKITDFGLAKVSG--EGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGY 378 (475)
T ss_pred cCCcceEEeccCCcceEEEecccchhhccc--cceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccC
Confidence 999999999755 789999999999865 34556788999999999987653 3345889999999999999999
Q ss_pred CCCCC---------------------CcchH-----HHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGP---------------------KFEDK-----DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~---------------------~~~~~-----~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.||.. .|.+- +++.+++.-+|+.||+++|++
T Consensus 379 pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL 435 (475)
T KOG0615|consen 379 PPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEAL 435 (475)
T ss_pred CCcccccCCccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHh
Confidence 99873 12211 799999999999999999874
|
|
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-18 Score=176.59 Aligned_cols=105 Identities=29% Similarity=0.503 Sum_probs=83.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.++++|||+++..............++..|+|||+.....++.++|||||||++||++| |+.|+..
T Consensus 128 dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~ 207 (261)
T cd05072 128 DLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPG 207 (261)
T ss_pred ccchhhEEecCCCcEEECCCccceecCCCceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCC
Confidence 999999999999999999999998754322211222344568999998877788899999999999999999 8888641
Q ss_pred C------------c--------chH--HHHhhcccCCCCCCCCccccC
Q 046589 704 K------------F--------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~------------~--------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. + ..+ +++.+|+..+|++||++++++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~ 255 (261)
T cd05072 208 MSNSDVMSALQRGYRMPRMENCPDELYDIMKTCWKEKAEERPTFDYLQ 255 (261)
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHH
Confidence 0 0 011 799999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.5e-19 Score=165.97 Aligned_cols=104 Identities=21% Similarity=0.342 Sum_probs=83.1
Q ss_pred cccccceEecCCccEEEeecCCccccCC---CCC-----cceecccccccccCccccC---CCCCCchhhHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISD---CKS-----HISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLE 693 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~---~~~-----~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~e 693 (729)
|+||.||++.+++.+++.|||-+....- ... ..+.....|..|+|||.+. ....++++||||+||++|+
T Consensus 154 DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa 233 (302)
T KOG2345|consen 154 DIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYA 233 (302)
T ss_pred CCCcceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHH
Confidence 9999999999999999999997765431 000 1123457889999999765 3456899999999999999
Q ss_pred HHhCCCCCCCC-----------------cchH--------HHHhhcccCCCCCCCCcccc
Q 046589 694 LVIRKQPTGPK-----------------FEDK--------DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 694 l~tg~~p~~~~-----------------~~~~--------~l~~~c~~~~p~~Rp~~~~v 728 (729)
|+.|..||+.. |.+. +++..|++.+|.+||++.++
T Consensus 234 ~mf~~sPfe~~~~~GgSlaLAv~n~q~s~P~~~~yse~l~~lik~mlqvdP~qRP~i~~l 293 (302)
T KOG2345|consen 234 MMFGESPFERIYQQGGSLALAVQNAQISIPNSSRYSEALHQLIKSMLQVDPNQRPTIPEL 293 (302)
T ss_pred HHHcCCcchHHhhcCCeEEEeeeccccccCCCCCccHHHHHHHHHHhcCCcccCCCHHHH
Confidence 99999998721 1111 89999999999999999876
|
|
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-18 Score=174.89 Aligned_cols=105 Identities=26% Similarity=0.439 Sum_probs=83.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|++|+||+++.++.++++|||.++..............++..|+|||......++.++|||||||++||++| |+.|+..
T Consensus 125 dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~ 204 (256)
T cd05114 125 DLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEK 204 (256)
T ss_pred ccCcceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCC
Confidence 999999999999999999999987654322221222344567999999877788999999999999999999 8888652
Q ss_pred Cc--c--------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KF--E--------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--~--------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.- . -.+++.+||+.+|++||+|++++
T Consensus 205 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~ 252 (256)
T cd05114 205 KSNYEVVEMISRGFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELL 252 (256)
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHH
Confidence 10 0 01799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-18 Score=179.22 Aligned_cols=103 Identities=26% Similarity=0.374 Sum_probs=85.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+||+||+++.++.+|++|||+++..... .......++..|+|||......++.++|||||||++|||++|+.|+..
T Consensus 135 dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~ 212 (290)
T cd07862 135 DLKPQNILVTSSGQIKLADFGLARIYSFQ--MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS 212 (290)
T ss_pred CCCHHHEEEcCCCCEEEccccceEeccCC--cccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCC
Confidence 99999999999999999999999875432 122345678899999988777889999999999999999999998752
Q ss_pred -------------------Ccch----------------------------HHHHhhcccCCCCCCCCccccC
Q 046589 704 -------------------KFED----------------------------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -------------------~~~~----------------------------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|.. .+++.+|++.+|++|||+.+++
T Consensus 213 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l 285 (290)
T cd07862 213 SDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSAL 285 (290)
T ss_pred CHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHh
Confidence 1110 1789999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-18 Score=181.70 Aligned_cols=101 Identities=27% Similarity=0.465 Sum_probs=83.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++|||||||++|||++|+.|+...
T Consensus 121 dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~ 199 (316)
T cd05592 121 DLKLDNVLLDKDGHIKIADFGMCKENMNGE-GKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGE 199 (316)
T ss_pred CCCHHHeEECCCCCEEEccCcCCeECCCCC-CccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999997643211 2223456789999999888888899999999999999999999998631
Q ss_pred ------------------cc-h--HHHHhhcccCCCCCCCCcc
Q 046589 705 ------------------FE-D--KDIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 705 ------------------~~-~--~~l~~~c~~~~p~~Rp~~~ 726 (729)
+. . .+++..|+..+|++||++.
T Consensus 200 ~~~~~~~~i~~~~~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~ 242 (316)
T cd05592 200 DEDELFDSILNDRPHFPRWISKEAKDCLSKLFERDPTKRLGVD 242 (316)
T ss_pred CHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCCHHHcCCCh
Confidence 01 1 1799999999999999875
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-18 Score=178.70 Aligned_cols=104 Identities=17% Similarity=0.200 Sum_probs=85.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc------ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH------ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~------~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||+||+++.++.++++|||+|+........ ......+|..|+|||...+..++.++|||||||+++||+||+
T Consensus 151 DiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~ 230 (294)
T PHA02882 151 DIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIK 230 (294)
T ss_pred CCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999875422111 111246889999999888888999999999999999999999
Q ss_pred CCCCCC-c------------chH----------------HHHhhcccCCCCCCCCcccc
Q 046589 699 QPTGPK-F------------EDK----------------DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 699 ~p~~~~-~------------~~~----------------~l~~~c~~~~p~~Rp~~~~v 728 (729)
.|+... - ... +++..|+..+|++||+++++
T Consensus 231 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l 289 (294)
T PHA02882 231 LPWKGFGHNGNLIHAAKCDFIKRLHEGKIKIKNANKFIYDFIECVTKLSYEEKPDYDAL 289 (294)
T ss_pred CCCCccccchHHHHHhHHHHHHHhhhhhhccCCCCHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 998531 0 000 79999999999999999886
|
|
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-18 Score=183.39 Aligned_cols=104 Identities=24% Similarity=0.503 Sum_probs=82.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-----CCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-----RKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-----~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+|++||+++.++.+|++|||+++...... .......++..|+|||.... ...+.++|||||||++|||++|+.
T Consensus 193 Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~ 271 (353)
T PLN00034 193 DIKPSNLLINSAKNVKIADFGVSRILAQTM-DPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRF 271 (353)
T ss_pred CCCHHHEEEcCCCCEEEcccccceeccccc-ccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCC
Confidence 999999999999999999999998754321 11223467889999997632 233568999999999999999999
Q ss_pred CCCC----Ccch---------------------HHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGP----KFED---------------------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~----~~~~---------------------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.. .|.. .+++.+||..+|++|||++|++
T Consensus 272 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell 326 (353)
T PLN00034 272 PFGVGRQGDWASLMCAICMSQPPEAPATASREFRHFISCCLQREPAKRWSAMQLL 326 (353)
T ss_pred CCCCCCCccHHHHHHHHhccCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 9852 2210 1799999999999999999874
|
|
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-18 Score=174.93 Aligned_cols=105 Identities=28% Similarity=0.487 Sum_probs=83.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.++++|||+++...............+..|+|||+.....++.++|||||||++||++| |+.|+..
T Consensus 128 dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~ 207 (261)
T cd05068 128 DLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPG 207 (261)
T ss_pred cCCcceEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999999999999998765321111112233457999999888888999999999999999999 8887652
Q ss_pred -Cc-------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 704 -KF-------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~-------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. ... +++.+|++.+|++||++++++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~ 255 (261)
T cd05068 208 MTNAEVLQQVDQGYRMPCPPGCPKELYDIMLDCWKEDPDDRPTFETLQ 255 (261)
T ss_pred CCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHhhcCcccCCCHHHHH
Confidence 10 001 799999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-18 Score=184.43 Aligned_cols=109 Identities=26% Similarity=0.273 Sum_probs=91.4
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
..|.....||.|+||.||+|... +++.||+|.
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~~~L~~ 171 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQRGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYKTDLYC 171 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhhhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCCCCHHH
Confidence 45677778999999999999874 778899985
Q ss_pred -----------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccC
Q 046589 625 -----------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVP 669 (729)
Q Consensus 625 -----------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~a 669 (729)
|+||+||+++.++.+||+|||+|+..............+|.+|+|
T Consensus 172 ~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~a 251 (391)
T PHA03212 172 YLAAKRNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNA 251 (391)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCcccccccccccccccccCccCCCC
Confidence 999999999999999999999997643222222234578899999
Q ss_pred ccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 670 PEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 670 pe~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
||+.....++.++||||+||++|||+||+.|+
T Consensus 252 PE~~~~~~~~~~~DiwSlGvil~elltg~~p~ 283 (391)
T PHA03212 252 PELLARDPYGPAVDIWSAGIVLFEMATCHDSL 283 (391)
T ss_pred hhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCc
Confidence 99988888899999999999999999998764
|
|
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-18 Score=183.50 Aligned_cols=103 Identities=21% Similarity=0.352 Sum_probs=84.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++||||+||++|||+||+.|+..
T Consensus 120 Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~ 198 (323)
T cd05571 120 DLKLENLMLDKDGHIKITDFGLCKEGISDG-ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ 198 (323)
T ss_pred CCCHHHEEECCCCCEEEeeCCCCcccccCC-CcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCC
Confidence 999999999999999999999987543211 122345688999999998888889999999999999999999999863
Q ss_pred Ccc------------------h--HHHHhhcccCCCCCCC-----Ccccc
Q 046589 704 KFE------------------D--KDIVVGCVSDNPIAKP-----GMLRV 728 (729)
Q Consensus 704 ~~~------------------~--~~l~~~c~~~~p~~Rp-----~~~~v 728 (729)
... . .+++.+|+..+|++|| +++++
T Consensus 199 ~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l 248 (323)
T cd05571 199 DHEKLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEI 248 (323)
T ss_pred CHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHH
Confidence 111 1 1799999999999999 56654
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-18 Score=180.17 Aligned_cols=75 Identities=31% Similarity=0.530 Sum_probs=64.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.++++|||+++..... ......++..|+|||...+..++.++|||||||++|||+||+.|+.
T Consensus 129 dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~ 203 (331)
T cd06649 129 DVKPSNILVNSRGEIKLCDFGVSGQLIDS---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIP 203 (331)
T ss_pred CCChhhEEEcCCCcEEEccCccccccccc---ccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999998765421 1223467889999999888889999999999999999999999974
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-18 Score=180.22 Aligned_cols=100 Identities=25% Similarity=0.413 Sum_probs=82.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.++++|||+++...... .......++..|+|||......++.++||||+||++|||+||+.|+...
T Consensus 118 Dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~ 196 (312)
T cd05585 118 DLKPENILLDYQGHIALCDFGLCKLNMKDD-DKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDE 196 (312)
T ss_pred CCCHHHeEECCCCcEEEEECcccccCccCC-CccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCC
Confidence 999999999999999999999998643211 2223456889999999988888899999999999999999999997521
Q ss_pred -cc------------------h--HHHHhhcccCCCCCCCCc
Q 046589 705 -FE------------------D--KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 705 -~~------------------~--~~l~~~c~~~~p~~Rp~~ 725 (729)
.. + .+++.+|+..+|++||++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~~~ 238 (312)
T cd05585 197 NVNEMYRKILQEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGY 238 (312)
T ss_pred CHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHcCCCHHHcCCC
Confidence 10 0 179999999999999864
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-19 Score=191.89 Aligned_cols=104 Identities=25% Similarity=0.493 Sum_probs=85.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecc--cccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDV--ASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~--~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+.++|||++.+..+||+|||++|.+.++.....++. .-+++|+|||...-.+++..+|||||||||||+++ |.+|.
T Consensus 756 DLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPY 835 (996)
T KOG0196|consen 756 DLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPY 835 (996)
T ss_pred hhhhhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcc
Confidence 9999999999999999999999998865443333332 33468999998888899999999999999999775 88886
Q ss_pred CCCcchH-----------------------HHHhhcccCCCCCCCCccccC
Q 046589 702 GPKFEDK-----------------------DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~~~~-----------------------~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. +|... +||+.||+.+-.+||+|.++|
T Consensus 836 W-dmSNQdVIkaIe~gyRLPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV 885 (996)
T KOG0196|consen 836 W-DMSNQDVIKAIEQGYRLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIV 885 (996)
T ss_pred c-ccchHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 4 12211 899999999999999999875
|
|
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.6e-18 Score=174.88 Aligned_cols=104 Identities=19% Similarity=0.320 Sum_probs=84.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||.||+++.++.+|++|||+++........ ......++..|+|||+.....++.++|||||||++||++| |+.|+.
T Consensus 134 dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~ 213 (279)
T cd05111 134 NLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYA 213 (279)
T ss_pred ccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999876432221 1223456678999999887888999999999999999998 888875
Q ss_pred CC-cc---------------------hHHHHhhcccCCCCCCCCcccc
Q 046589 703 PK-FE---------------------DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 703 ~~-~~---------------------~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.. .. ..+++.+||..+|++|||++|+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~el 261 (279)
T cd05111 214 GMRPHEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENVRPTFKEL 261 (279)
T ss_pred CCCHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHH
Confidence 31 11 0068889999999999999986
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-18 Score=179.29 Aligned_cols=104 Identities=24% Similarity=0.395 Sum_probs=89.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+|+.|||++.++.+|++|||++........ .-.+..||++|||||......|..|+||||+|++.+||+.|.+|+--+
T Consensus 394 DIKSDnILL~~~g~vKltDFGFcaqi~~~~~-KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE 472 (550)
T KOG0578|consen 394 DIKSDNILLTMDGSVKLTDFGFCAQISEEQS-KRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNE 472 (550)
T ss_pred ccccceeEeccCCcEEEeeeeeeeccccccC-ccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCC
Confidence 9999999999999999999998887765332 334678999999999999999999999999999999999999886510
Q ss_pred ----------------cch--------HHHHhhcccCCCCCCCCccccC
Q 046589 705 ----------------FED--------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ----------------~~~--------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... .+++.+|+..||++||++.|++
T Consensus 473 ~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL 521 (550)
T KOG0578|consen 473 NPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKELL 521 (550)
T ss_pred ChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHHh
Confidence 000 0899999999999999999874
|
|
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-18 Score=180.67 Aligned_cols=100 Identities=22% Similarity=0.346 Sum_probs=82.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++|||||||++|||+||+.|+...
T Consensus 126 Dlkp~Nill~~~~~~kL~DfG~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~ 204 (323)
T cd05616 126 DLKLDNVMLDSEGHIKIADFGMCKENMWDG-VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE 204 (323)
T ss_pred CCCHHHeEECCCCcEEEccCCCceecCCCC-CccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCC
Confidence 999999999999999999999987643211 1223456788999999988888999999999999999999999998731
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCCCc
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp~~ 725 (729)
-. . .+++.+|++.+|++|++.
T Consensus 205 ~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~l~~~p~~R~~~ 246 (323)
T cd05616 205 DEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGC 246 (323)
T ss_pred CHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHcccCHHhcCCC
Confidence 11 1 178999999999999985
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-18 Score=180.17 Aligned_cols=100 Identities=22% Similarity=0.371 Sum_probs=82.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++||||+||++|||+||+.|+...
T Consensus 121 dlkp~NIli~~~~~~kL~DfG~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~ 199 (320)
T cd05590 121 DLKLDNVLLDHEGHCKLADFGMCKEGIFNG-KTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAE 199 (320)
T ss_pred CCCHHHeEECCCCcEEEeeCCCCeecCcCC-CcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCC
Confidence 999999999999999999999987643211 1223456788999999988888899999999999999999999998631
Q ss_pred ------------------cch---HHHHhhcccCCCCCCCCc
Q 046589 705 ------------------FED---KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 705 ------------------~~~---~~l~~~c~~~~p~~Rp~~ 725 (729)
|.. .+++.+|+..+|++||++
T Consensus 200 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~ 241 (320)
T cd05590 200 NEDDLFEAILNDEVVYPTWLSQDAVDILKAFMTKNPTMRLGS 241 (320)
T ss_pred CHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcccCHHHCCCC
Confidence 111 179999999999999998
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-18 Score=179.45 Aligned_cols=101 Identities=25% Similarity=0.419 Sum_probs=83.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.++++|||+++..... ........++..|+|||......++.++||||+||++|||++|+.|+...
T Consensus 121 Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~ 199 (316)
T cd05620 121 DLKLDNVMLDRDGHIKIADFGMCKENVFG-DNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGD 199 (316)
T ss_pred CCCHHHeEECCCCCEEeCccCCCeecccC-CCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999998753221 12233456789999999988888899999999999999999999998631
Q ss_pred ------------------cch---HHHHhhcccCCCCCCCCcc
Q 046589 705 ------------------FED---KDIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 705 ------------------~~~---~~l~~~c~~~~p~~Rp~~~ 726 (729)
|.. .+++.+|+..+|++||++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~ 242 (316)
T cd05620 200 DEDELFESIRVDTPHYPRWITKESKDILEKLFERDPTRRLGVV 242 (316)
T ss_pred CHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHccCCHHHcCCCh
Confidence 111 1789999999999999984
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-18 Score=189.32 Aligned_cols=74 Identities=23% Similarity=0.276 Sum_probs=62.7
Q ss_pred cccccceEecCCc----------------cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHH
Q 046589 625 DIKASNILLNEDF----------------DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFG 688 (729)
Q Consensus 625 dlk~~nill~~~~----------------~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G 688 (729)
||||+||+++.++ .+||+|||.+.... .......+|.+|+|||...+..++.++||||||
T Consensus 257 DlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~----~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlG 332 (467)
T PTZ00284 257 DLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDER----HSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMG 332 (467)
T ss_pred CCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCc----cccccccCCccccCcHHhhcCCCCcHHHHHHHH
Confidence 9999999998665 48999999875432 222345788999999998888899999999999
Q ss_pred HHHHHHHhCCCCCC
Q 046589 689 VVLLELVIRKQPTG 702 (729)
Q Consensus 689 ~vl~el~tg~~p~~ 702 (729)
|++|||+||+.||+
T Consensus 333 vil~elltG~~pf~ 346 (467)
T PTZ00284 333 CIIYELYTGKLLYD 346 (467)
T ss_pred HHHHHHHhCCCCCC
Confidence 99999999999985
|
|
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-18 Score=176.96 Aligned_cols=105 Identities=30% Similarity=0.507 Sum_probs=82.8
Q ss_pred cccccceEecC-CccEEEeecCCccccCC--CCCcceecccccccccCccccCCCC-CCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNE-DFDAKVLDFGLARLISD--CKSHISTDVASAISYVPPEYGRARK-ANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~-~~~~kl~dfgl~~~~~~--~~~~~~~~~~~~~~y~ape~~~~~~-~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+|++|||++. ++.+||+|||+++.... ..........||+.|||||....+. ...++||||+||++.||+||+.|
T Consensus 142 DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~P 221 (313)
T KOG0198|consen 142 DIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPP 221 (313)
T ss_pred CcccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCc
Confidence 99999999999 79999999999987653 1111223468899999999887533 33489999999999999999888
Q ss_pred CCC--Ccc----------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 701 TGP--KFE----------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~--~~~----------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+.. .+. ..+++..|+..+|+.|||+++++
T Consensus 222 W~~~~~~~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL 274 (313)
T KOG0198|consen 222 WSEFFEEAEALLLIGREDSLPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELL 274 (313)
T ss_pred chhhcchHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHh
Confidence 542 000 11799999999999999999864
|
|
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-18 Score=177.26 Aligned_cols=96 Identities=24% Similarity=0.445 Sum_probs=80.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++..... .....++..|+|||......++.++||||+||++|||+||+.|+...
T Consensus 126 dlkp~NIli~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~ 201 (291)
T cd05612 126 DLKPENILLDKEGHIKLTDFGFAKKLRDR----TWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDD 201 (291)
T ss_pred CCCHHHeEECCCCCEEEEecCcchhccCC----cccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999998875421 12346788999999888888899999999999999999999998631
Q ss_pred ---------------cc------hHHHHhhcccCCCCCCCC
Q 046589 705 ---------------FE------DKDIVVGCVSDNPIAKPG 724 (729)
Q Consensus 705 ---------------~~------~~~l~~~c~~~~p~~Rp~ 724 (729)
+. -.+++.+|+..+|.+||+
T Consensus 202 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~ 242 (291)
T cd05612 202 NPFGIYEKILAGKLEFPRHLDLYAKDLIKKLLVVDRTRRLG 242 (291)
T ss_pred CHHHHHHHHHhCCcCCCccCCHHHHHHHHHHcCCCHHHccC
Confidence 11 018999999999999995
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-18 Score=181.27 Aligned_cols=105 Identities=26% Similarity=0.329 Sum_probs=83.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC--cceecccccccccCccccCC--CCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS--HISTDVASAISYVPPEYGRA--RKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~--~~~~~~~~~~~y~ape~~~~--~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++.+|++|||+++....... .......++..|+|||.... ..++.++|||||||++|||+||+.|
T Consensus 128 dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~p 207 (338)
T cd07859 128 DLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPL 207 (338)
T ss_pred CCCHHHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999986432111 11234567889999997654 5788999999999999999999988
Q ss_pred CCCCc--------------------------------------------------c--hHHHHhhcccCCCCCCCCcccc
Q 046589 701 TGPKF--------------------------------------------------E--DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 701 ~~~~~--------------------------------------------------~--~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
+...- . ..+++.+|++.+|++|||++|+
T Consensus 208 f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~ 287 (338)
T cd07859 208 FPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEA 287 (338)
T ss_pred CCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHH
Confidence 74210 0 0168999999999999999987
Q ss_pred C
Q 046589 729 Q 729 (729)
Q Consensus 729 ~ 729 (729)
+
T Consensus 288 l 288 (338)
T cd07859 288 L 288 (338)
T ss_pred h
Confidence 4
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-18 Score=178.23 Aligned_cols=101 Identities=29% Similarity=0.427 Sum_probs=83.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||...+..++.++||||+||++|||+||+.|+...
T Consensus 121 dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~ 199 (316)
T cd05619 121 DLKLDNILLDTDGHIKIADFGMCKENMLGD-AKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGH 199 (316)
T ss_pred CCCHHHEEECCCCCEEEccCCcceECCCCC-CceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999987532211 1223456788999999988888899999999999999999999997521
Q ss_pred ------------------cch---HHHHhhcccCCCCCCCCcc
Q 046589 705 ------------------FED---KDIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 705 ------------------~~~---~~l~~~c~~~~p~~Rp~~~ 726 (729)
|.. .+++.+|++.+|++||++.
T Consensus 200 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~ 242 (316)
T cd05619 200 DEEELFQSIRMDNPCYPRWLTREAKDILVKLFVREPERRLGVK 242 (316)
T ss_pred CHHHHHHHHHhCCCCCCccCCHHHHHHHHHHhccCHhhcCCCh
Confidence 111 1799999999999999986
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.5e-18 Score=182.51 Aligned_cols=105 Identities=24% Similarity=0.287 Sum_probs=83.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..............++.+|+|||...+ ..++.++||||+||++|||++|+.|+..
T Consensus 128 dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~ 207 (372)
T cd07853 128 DIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQA 207 (372)
T ss_pred CCChHHEEECCCCCEEeccccceeecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999998754322222233456788999997765 4578899999999999999999998742
Q ss_pred Cc---------------------------------------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KF---------------------------------------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~---------------------------------------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.- .+ .+++.+|++.+|++|||+++++
T Consensus 208 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l 286 (372)
T cd07853 208 QSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADAL 286 (372)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHh
Confidence 10 00 1689999999999999999874
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=170.82 Aligned_cols=105 Identities=23% Similarity=0.322 Sum_probs=82.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|++|+||+++.++.++++|||+++..............++..|+|||+.....++.++|||||||++||+++ |..|+..
T Consensus 118 dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~ 197 (250)
T cd05085 118 DLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPG 197 (250)
T ss_pred ccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999999999987643221111112234567999999887888999999999999999998 8888642
Q ss_pred Cc--------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KF--------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.- .. .+++.+|++.+|++||++.+++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~ 245 (250)
T cd05085 198 MTNQQAREQVEKGYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQ 245 (250)
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHH
Confidence 00 01 1799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-17 Score=175.25 Aligned_cols=104 Identities=20% Similarity=0.285 Sum_probs=83.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..... ........++..|+|||...+ ..++.++||||+||++|||+||+.|+..
T Consensus 128 dlkp~Nil~~~~~~~kl~DfG~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~ 206 (288)
T cd07871 128 DLKPQNLLINEKGELKLADFGLARAKSVP-TKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPG 206 (288)
T ss_pred CCCHHHEEECCCCCEEECcCcceeeccCC-CccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999998764321 112233466789999997654 5678999999999999999999988741
Q ss_pred C--------------------cc-------------------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 K--------------------FE-------------------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~--------------------~~-------------------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. |. ..+++..|+..+|++|||++|++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l 283 (288)
T cd07871 207 STVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAAL 283 (288)
T ss_pred CCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHh
Confidence 0 00 01699999999999999999874
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-18 Score=175.62 Aligned_cols=104 Identities=27% Similarity=0.429 Sum_probs=80.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCC------CCCchhhHHHHHHHHHHHHhC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRAR------KANERDNIYRFGVVLLELVIR 697 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~------~~~~~~Dv~s~G~vl~el~tg 697 (729)
|+|+.|||+..|+++.|+|||+|..+.+..... ..+.+||.+|||||.+.++ ..--+.||||.|.|+||++++
T Consensus 341 DlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SR 420 (534)
T KOG3653|consen 341 DLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASR 420 (534)
T ss_pred cccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999877544322 2357899999999976542 122458999999999999987
Q ss_pred CCCCCC--------CcchH-------------------------------------HHHhhcccCCCCCCCCcccc
Q 046589 698 KQPTGP--------KFEDK-------------------------------------DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 698 ~~p~~~--------~~~~~-------------------------------------~l~~~c~~~~p~~Rp~~~~v 728 (729)
....++ .+..+ +.+..||.+||+.|-|+.-|
T Consensus 421 C~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv 496 (534)
T KOG3653|consen 421 CTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCV 496 (534)
T ss_pred cccccCCCCCcccCchhHHhcCCCCHHHHHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHH
Confidence 665431 11111 68889999999999998654
|
|
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.7e-18 Score=179.24 Aligned_cols=100 Identities=22% Similarity=0.377 Sum_probs=82.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++||||+||++|||+||+.|+...
T Consensus 126 dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~ 204 (324)
T cd05587 126 DLKLDNVMLDAEGHIKIADFGMCKENIFGG-KTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE 204 (324)
T ss_pred CCCHHHeEEcCCCCEEEeecCcceecCCCC-CceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999987532211 1223456789999999988888899999999999999999999998631
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCCCc
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp~~ 725 (729)
-. . .+++.+|+..+|++|++.
T Consensus 205 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~ 246 (324)
T cd05587 205 DEDELFQSIMEHNVSYPKSLSKEAVSICKGLLTKHPAKRLGC 246 (324)
T ss_pred CHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 11 1 178999999999999986
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.1e-18 Score=176.92 Aligned_cols=104 Identities=20% Similarity=0.297 Sum_probs=82.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..... ........++..|+|||...+ ..++.++||||+||++|||+||+.|+..
T Consensus 128 dlkp~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~ 206 (303)
T cd07869 128 DLKPQNLLISDTGELKLADFGLARAKSVP-SHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPG 206 (303)
T ss_pred CCCHHHEEECCCCCEEECCCCcceeccCC-CccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999998754321 122234467889999997654 5578899999999999999999999742
Q ss_pred C---------------------cc---------------------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 K---------------------FE---------------------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~---------------------~~---------------------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. |. ..+++..|++.+|++|||++|++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l 286 (303)
T cd07869 207 MKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAAL 286 (303)
T ss_pred CccHHHHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHh
Confidence 0 00 01689999999999999999874
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.5e-18 Score=174.82 Aligned_cols=106 Identities=26% Similarity=0.450 Sum_probs=84.7
Q ss_pred ccccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 624 ~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
+|+||+||+++.++.++++|||+++........ ......++..|+|||+.....++.++|||||||++|||+| |+.|+
T Consensus 148 ~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~ 227 (283)
T cd05048 148 RDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPY 227 (283)
T ss_pred cccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCC
Confidence 399999999999999999999999865432211 1123345678999998888888999999999999999998 99887
Q ss_pred CC-Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP-KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~-~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. ... . .+++.+||+.+|++||++++|+
T Consensus 228 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~ 277 (283)
T cd05048 228 YGFSNQEVIEMIRSRQLLPCPEDCPARVYALMIECWNEIPARRPRFKDIH 277 (283)
T ss_pred CCCCHHHHHHHHHcCCcCCCcccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 53 100 0 1899999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-18 Score=181.58 Aligned_cols=101 Identities=22% Similarity=0.382 Sum_probs=84.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++.... ......++..|+|||......++.++||||+||++|||++|+.|+...
T Consensus 126 dlkp~Nil~~~~~~~kL~Dfg~a~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~ 201 (333)
T cd05600 126 DLKPENFLIDASGHIKLTDFGLSKGIVT----YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGS 201 (333)
T ss_pred CCCHHHEEECCCCCEEEEeCcCCccccc----ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCC
Confidence 9999999999999999999999976542 122456788999999988888999999999999999999999997521
Q ss_pred --------------------cc-------h--HHHHhhcccCCCCCCCCccccC
Q 046589 705 --------------------FE-------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 --------------------~~-------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+. . .+++.+|+..+|++||++++++
T Consensus 202 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll 255 (333)
T cd05600 202 TPNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIK 255 (333)
T ss_pred CHHHHHHHHHhccccccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHHH
Confidence 00 0 1689999999999999999874
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.3e-18 Score=178.85 Aligned_cols=98 Identities=23% Similarity=0.371 Sum_probs=80.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++|||||||++|||+||+.|+..
T Consensus 120 Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~ 198 (323)
T cd05595 120 DIKLENLMLDKDGHIKITDFGLCKEGISDG-ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ 198 (323)
T ss_pred CCCHHHEEEcCCCCEEecccHHhccccCCC-CccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999987543211 122345678899999998888889999999999999999999999853
Q ss_pred Ccc------------------h--HHHHhhcccCCCCCCC
Q 046589 704 KFE------------------D--KDIVVGCVSDNPIAKP 723 (729)
Q Consensus 704 ~~~------------------~--~~l~~~c~~~~p~~Rp 723 (729)
... + .+++..|+..+|++||
T Consensus 199 ~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~ 238 (323)
T cd05595 199 DHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRL 238 (323)
T ss_pred CHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHccCCHHHhC
Confidence 111 1 1799999999999998
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-18 Score=179.30 Aligned_cols=99 Identities=23% Similarity=0.381 Sum_probs=81.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++||||+||++|||+||+.|+...
T Consensus 121 Dikp~Nill~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~ 199 (321)
T cd05591 121 DLKLDNILLDAEGHCKLADFGMCKEGILNG-VTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEAD 199 (321)
T ss_pred CCCHHHeEECCCCCEEEeecccceecccCC-ccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCC
Confidence 999999999999999999999987543211 1123446788999999888888899999999999999999999998631
Q ss_pred ------------------cchH---HHHhhcccCCCCCCCC
Q 046589 705 ------------------FEDK---DIVVGCVSDNPIAKPG 724 (729)
Q Consensus 705 ------------------~~~~---~l~~~c~~~~p~~Rp~ 724 (729)
|... +++..|+..+|++||+
T Consensus 200 ~~~~~~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dp~~R~~ 240 (321)
T cd05591 200 NEDDLFESILHDDVLYPVWLSKEAVSILKAFMTKNPNKRLG 240 (321)
T ss_pred CHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHcCC
Confidence 1111 7999999999999994
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-17 Score=173.12 Aligned_cols=105 Identities=23% Similarity=0.354 Sum_probs=83.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++......... .....++..|+|||......++.++|||||||++||++| |+.|+.
T Consensus 134 dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~ 213 (279)
T cd05109 134 DLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYD 213 (279)
T ss_pred ccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999998764322211 112234567999998877888999999999999999999 888865
Q ss_pred CCcc--------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PKFE--------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~~--------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.... .. +++.+||..+|++||++.+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~ 262 (279)
T cd05109 214 GIPAREIPDLLEKGERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELV 262 (279)
T ss_pred CCCHHHHHHHHHCCCcCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 2100 00 799999999999999999863
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=171.46 Aligned_cols=105 Identities=28% Similarity=0.461 Sum_probs=82.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++...............+..|+|||......++.++|||||||++||++| |+.|+..
T Consensus 125 dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~ 204 (256)
T cd05059 125 DLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYER 204 (256)
T ss_pred cccHhhEEECCCCcEEECCcccceecccccccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCC
Confidence 999999999999999999999987654321111112233457999998888888999999999999999999 7777642
Q ss_pred -Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 -KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... . .+++.+|+..+|++||||++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l 252 (256)
T cd05059 205 FSNSEVVESVSAGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLL 252 (256)
T ss_pred CCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHH
Confidence 100 0 1899999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-17 Score=171.60 Aligned_cols=104 Identities=26% Similarity=0.432 Sum_probs=82.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++...............+..|+|||+.....++.++|||||||++|||+| |..|+..
T Consensus 129 dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~ 208 (263)
T cd05052 129 DLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG 208 (263)
T ss_pred ccCcceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence 999999999999999999999988754321111111223457999998887888999999999999999998 8888652
Q ss_pred -Ccc---------------------hHHHHhhcccCCCCCCCCcccc
Q 046589 704 -KFE---------------------DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 -~~~---------------------~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
... -.+++.+|++.+|++||+|.++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l 255 (263)
T cd05052 209 IDLSQVYELLEKGYRMERPEGCPPKVYELMRACWQWNPSDRPSFAEI 255 (263)
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHH
Confidence 100 0179999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-18 Score=181.22 Aligned_cols=101 Identities=23% Similarity=0.405 Sum_probs=80.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC-CCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR-KANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~-~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..............++..|+|||...+. .++.++|||||||++|||+||+.|+..
T Consensus 130 Dlkp~Nili~~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~ 209 (332)
T cd05614 130 DIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTL 209 (332)
T ss_pred CCCHHHeEECCCCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCC
Confidence 9999999999999999999999986543222223345688999999987654 468899999999999999999999852
Q ss_pred C---cc----------------------hHHHHhhcccCCCCCCCCc
Q 046589 704 K---FE----------------------DKDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 704 ~---~~----------------------~~~l~~~c~~~~p~~Rp~~ 725 (729)
. .. -.+++.+|++.+|++||++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~ 256 (332)
T cd05614 210 EGERNTQSEVSRRILKCDPPFPSFIGPEAQDLLHKLLRKDPKKRLGA 256 (332)
T ss_pred CCCCCCHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcCCCHHHcCCC
Confidence 0 00 0179999999999999954
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-17 Score=177.44 Aligned_cols=102 Identities=21% Similarity=0.301 Sum_probs=82.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++|||||||++|||++|+.|+...
T Consensus 126 dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~ 204 (324)
T cd05589 126 DLKLDNLLLDTEGFVKIADFGLCKEGMGFG-DRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGD 204 (324)
T ss_pred CCCHHHeEECCCCcEEeCcccCCccCCCCC-CcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999987533211 1223456788999999988888899999999999999999999998631
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCCCccc
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKPGMLR 727 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp~~~~ 727 (729)
-. . .+++.+|+..+|++||++++
T Consensus 205 ~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~ 248 (324)
T cd05589 205 DEEEVFDSIVNDEVRYPRFLSREAISIMRRLLRRNPERRLGSGE 248 (324)
T ss_pred CHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence 10 1 17999999999999996543
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-17 Score=180.04 Aligned_cols=76 Identities=32% Similarity=0.404 Sum_probs=64.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++..... .......++..|+|||...+..++.++|||||||++|||++|+.|+.
T Consensus 144 Dikp~Nill~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~ 219 (355)
T cd07874 144 DLKPSNIVVKSDCTLKILDFGLARTAGTS--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 219 (355)
T ss_pred CCChHHEEECCCCCEEEeeCcccccCCCc--cccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999865321 11233467889999999888888999999999999999999998874
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-17 Score=171.54 Aligned_cols=136 Identities=27% Similarity=0.454 Sum_probs=110.3
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
+.+.....+|.|+||.||+|...+++.||+|.
T Consensus 6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~ 85 (260)
T cd05067 6 ETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYMENG 85 (260)
T ss_pred HHceeeeeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEccCCcEEEEEcCCCC
Confidence 34555667999999999999998889999995
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|+||+||+++.++.++++|||+++..............+
T Consensus 86 ~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~ 165 (260)
T cd05067 86 SLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKF 165 (260)
T ss_pred CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccCCcc
Confidence 999999999999999999999987754222222223345
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCcc----------------------hHHHHhhcccCCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGPKFE----------------------DKDIVVGCVSDNPI 720 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~~~~----------------------~~~l~~~c~~~~p~ 720 (729)
+..|+|||+.....++.++|||||||++||+++ |+.|+...-. -.+++.+|+..+|+
T Consensus 166 ~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~ 245 (260)
T cd05067 166 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYRMPRPDNCPEELYELMRLCWKEKPE 245 (260)
T ss_pred cccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChh
Confidence 678999998877778899999999999999999 8888752100 01799999999999
Q ss_pred CCCCcccc
Q 046589 721 AKPGMLRV 728 (729)
Q Consensus 721 ~Rp~~~~v 728 (729)
+|||++++
T Consensus 246 ~Rp~~~~l 253 (260)
T cd05067 246 ERPTFEYL 253 (260)
T ss_pred hCCCHHHH
Confidence 99999886
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-17 Score=177.25 Aligned_cols=100 Identities=22% Similarity=0.354 Sum_probs=82.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||...+..++.++|||||||++|||+||+.|+...
T Consensus 121 dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~ 199 (318)
T cd05570 121 DLKLDNVLLDSEGHIKIADFGMCKEGILGG-VTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGD 199 (318)
T ss_pred CCCHHHeEECCCCcEEecccCCCeecCcCC-CcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCC
Confidence 999999999999999999999987532211 1122345788999999988888899999999999999999999998631
Q ss_pred -cc------------------h--HHHHhhcccCCCCCCCCc
Q 046589 705 -FE------------------D--KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 705 -~~------------------~--~~l~~~c~~~~p~~Rp~~ 725 (729)
.. . .+++.+|+..+|++||++
T Consensus 200 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~s~ 241 (318)
T cd05570 200 DEDELFQSILEDEVRYPRWLSKEAKSILKSFLTKNPEKRLGC 241 (318)
T ss_pred CHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHccCCHHHcCCC
Confidence 00 0 189999999999999998
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-17 Score=169.56 Aligned_cols=104 Identities=25% Similarity=0.482 Sum_probs=85.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.++++|||+++...... .......++.+|+|||+.....++.++|||||||+++||+||+.|+...
T Consensus 126 dl~~~nili~~~~~~~l~df~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 204 (256)
T cd08529 126 DIKSLNLFLDAYDNVKIGDLGVAKLLSDNT-NFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDAN 204 (256)
T ss_pred CCCcceEEEeCCCCEEEcccccceeccCcc-chhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999988754321 1122345678899999988888899999999999999999999997631
Q ss_pred cc----------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 705 FE----------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~~----------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. -.+++.+||+.+|++||++.+++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll 251 (256)
T cd08529 205 NQGALILKIIRGVFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLL 251 (256)
T ss_pred CHHHHHHHHHcCCCCCCccccCHHHHHHHHHHccCCcccCcCHHHHh
Confidence 10 01799999999999999999874
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-17 Score=172.15 Aligned_cols=104 Identities=15% Similarity=0.266 Sum_probs=80.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.++++|||.+...............++..|+|||......++.++|||||||++||+++ |+.|+..
T Consensus 132 dikp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~ 211 (266)
T cd05064 132 GLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWD 211 (266)
T ss_pred cccHhhEEEcCCCcEEECCCcccccccccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCc
Confidence 999999999999999999999776532211111112234568999998888889999999999999999875 9888752
Q ss_pred -Cc-------------------c--hHHHHhhcccCCCCCCCCcccc
Q 046589 704 -KF-------------------E--DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 -~~-------------------~--~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.. . -.+++.+||+.+|++||+++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i 258 (266)
T cd05064 212 MSGQDVIKAVEDGFRLPAPRNCPNLLHQLMLDCWQKERGERPRFSQI 258 (266)
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHH
Confidence 10 0 0179999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-17 Score=171.43 Aligned_cols=102 Identities=24% Similarity=0.358 Sum_probs=84.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.++++|||++...... .......++..|+|||+.....++.++||||+||++||+++|+.|+...
T Consensus 120 dikp~Nili~~~~~~~l~Dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~ 197 (277)
T cd05607 120 DMKPENVLLDDQGNCRLSDLGLAVELKDG--KTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDH 197 (277)
T ss_pred cCChHhEEEcCCCCEEEeeceeeeecCCC--ceeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999998765431 1122346788999999988888999999999999999999999997521
Q ss_pred ---cc-----------------------hHHHHhhcccCCCCCCCCcccc
Q 046589 705 ---FE-----------------------DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 705 ---~~-----------------------~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.. ..+++.+|++.+|++||+++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~ 247 (277)
T cd05607 198 KEKVAKEELKRRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREK 247 (277)
T ss_pred cchhhHHHHHHHhhccccccccccCCHHHHHHHHHHhccCHhhCCCCccc
Confidence 00 0179999999999999999654
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-18 Score=180.24 Aligned_cols=96 Identities=26% Similarity=0.464 Sum_probs=81.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++..... .....++..|+|||......++.++|||||||++|||+||+.|+...
T Consensus 143 dlkp~NIll~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~ 218 (329)
T PTZ00263 143 DLKPENLLLDNKGHVKVTDFGFAKKVPDR----TFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDD 218 (329)
T ss_pred CCCHHHEEECCCCCEEEeeccCceEcCCC----cceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCC
Confidence 99999999999999999999999875431 12346788999999988888899999999999999999999998521
Q ss_pred ------------------cch---HHHHhhcccCCCCCCCC
Q 046589 705 ------------------FED---KDIVVGCVSDNPIAKPG 724 (729)
Q Consensus 705 ------------------~~~---~~l~~~c~~~~p~~Rp~ 724 (729)
|.. .+++..|++.+|++||+
T Consensus 219 ~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~ 259 (329)
T PTZ00263 219 TPFRIYEKILAGRLKFPNWFDGRARDLVKGLLQTDHTKRLG 259 (329)
T ss_pred CHHHHHHHHhcCCcCCCCCCCHHHHHHHHHHhhcCHHHcCC
Confidence 111 17999999999999997
|
|
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-17 Score=178.49 Aligned_cols=103 Identities=21% Similarity=0.346 Sum_probs=83.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+||+||+++.++.+|++|||+++..... ........++..|+|||......++.++||||+||++|||+||+.|+..
T Consensus 120 Dikp~NIll~~~~~~kL~DfG~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~ 198 (328)
T cd05593 120 DLKLENLMLDKDGHIKITDFGLCKEGITD-AATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ 198 (328)
T ss_pred ccCHHHeEECCCCcEEEecCcCCccCCCc-ccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCC
Confidence 99999999999999999999998764321 1122345678899999998888889999999999999999999999852
Q ss_pred Ccc--------------------hHHHHhhcccCCCCCCC-----Ccccc
Q 046589 704 KFE--------------------DKDIVVGCVSDNPIAKP-----GMLRV 728 (729)
Q Consensus 704 ~~~--------------------~~~l~~~c~~~~p~~Rp-----~~~~v 728 (729)
... -.+++.+|+..+|++|| +++++
T Consensus 199 ~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~i 248 (328)
T cd05593 199 DHEKLFELILMEDIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEI 248 (328)
T ss_pred CHHHHHHHhccCCccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHH
Confidence 111 11799999999999997 66654
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-17 Score=162.10 Aligned_cols=75 Identities=25% Similarity=0.450 Sum_probs=69.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+|||+|.+|+.||+|||.|+.... ...+.+||+-|+|||...+..+...+|+|||||++|||+.|.+||..
T Consensus 169 DLKPENiLlD~~G~iKitDFGFAK~v~~----rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~ 243 (355)
T KOG0616|consen 169 DLKPENLLLDQNGHIKITDFGFAKRVSG----RTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYD 243 (355)
T ss_pred cCChHHeeeccCCcEEEEeccceEEecC----cEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcC
Confidence 9999999999999999999999998653 24467899999999999999999999999999999999999999873
|
|
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-17 Score=170.61 Aligned_cols=105 Identities=25% Similarity=0.405 Sum_probs=83.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||.||+++.++.+|++|||+++..............++..|+|||......++.++|||||||++|||+| |+.|+..
T Consensus 125 dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~ 204 (256)
T cd05113 125 DLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYER 204 (256)
T ss_pred ccCcceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCc
Confidence 999999999999999999999988654322111122344568999999877788999999999999999999 8888652
Q ss_pred -Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 -KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... . .+++.+||..+|++||++.+++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll 252 (256)
T cd05113 205 FNNSETVEKVSQGLRLYRPHLASEKVYAIMYSCWHEKAEERPTFQQLL 252 (256)
T ss_pred CCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHH
Confidence 100 0 1799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-17 Score=183.99 Aligned_cols=103 Identities=16% Similarity=0.286 Sum_probs=82.0
Q ss_pred cccccceEecCC-ccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNED-FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~-~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.+ +.+||+|||+|+....... .....++.+|+|||...+ ..++.++||||+||++|||+||+.|+.
T Consensus 195 DLKp~NILl~~~~~~vkL~DFGla~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~ 272 (440)
T PTZ00036 195 DLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQR--SVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFS 272 (440)
T ss_pred CcCHHHEEEcCCCCceeeeccccchhccCCCC--cccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999965 5799999999987543221 223466889999997654 468999999999999999999999875
Q ss_pred CCc------------------------------------------------c--hHHHHhhcccCCCCCCCCccccC
Q 046589 703 PKF------------------------------------------------E--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~------------------------------------------------~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..- . ..+++..|+..+|.+|||+.|++
T Consensus 273 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l 349 (440)
T PTZ00036 273 GQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEAL 349 (440)
T ss_pred CCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence 210 0 01789999999999999998864
|
|
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-17 Score=177.42 Aligned_cols=98 Identities=20% Similarity=0.371 Sum_probs=80.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+||+|||+++...... .......++.+|+|||......++.++||||+||++|||+||+.|+...
T Consensus 125 dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~ 203 (323)
T cd05584 125 DLKPENILLDAQGHVKLTDFGLCKESIHEG-TVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAE 203 (323)
T ss_pred CCCHHHeEECCCCCEEEeeCcCCeecccCC-CcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCC
Confidence 999999999999999999999987543211 1122346788999999988788889999999999999999999998631
Q ss_pred c-------------------ch--HHHHhhcccCCCCCCC
Q 046589 705 F-------------------ED--KDIVVGCVSDNPIAKP 723 (729)
Q Consensus 705 ~-------------------~~--~~l~~~c~~~~p~~Rp 723 (729)
- .. .+++.+|++.+|++||
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~ 243 (323)
T cd05584 204 NRKKTIDKILKGKLNLPPYLTPEARDLLKKLLKRNPSSRL 243 (323)
T ss_pred CHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcccCHhHcC
Confidence 0 00 1899999999999999
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-17 Score=170.55 Aligned_cols=104 Identities=26% Similarity=0.490 Sum_probs=82.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||++++++.++++|||+++..............++..|+|||+.....++.++|||||||++||+++ |+.|+..
T Consensus 127 di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~ 206 (260)
T cd05070 127 DLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPG 206 (260)
T ss_pred CCccceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999999999999998754322221222334568999998877888999999999999999999 7777642
Q ss_pred Ccc----------------------hHHHHhhcccCCCCCCCCcccc
Q 046589 704 KFE----------------------DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 ~~~----------------------~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.-. -.+++.+|+..+|++|||++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l 253 (260)
T cd05070 207 MNNREVLEQVERGYRMPCPQDCPISLHELMLQCWKKDPEERPTFEYL 253 (260)
T ss_pred CCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccCcccCcCHHHH
Confidence 000 0189999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-17 Score=169.94 Aligned_cols=104 Identities=29% Similarity=0.521 Sum_probs=82.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||.||+++.++.++++|||.++..............++..|+|||+.....++.++|||||||++||++| |+.|+..
T Consensus 127 dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~ 206 (262)
T cd05071 127 DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPG 206 (262)
T ss_pred ccCcccEEEcCCCcEEeccCCceeeccccccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCC
Confidence 999999999999999999999997654322211123345668999998877888999999999999999999 6766642
Q ss_pred Ccc--------------------h--HHHHhhcccCCCCCCCCcccc
Q 046589 704 KFE--------------------D--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 ~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
... + .+++.+|++.+|++||+++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~ 253 (262)
T cd05071 207 MVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYL 253 (262)
T ss_pred CChHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHH
Confidence 110 0 179999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-17 Score=178.40 Aligned_cols=76 Identities=32% Similarity=0.383 Sum_probs=64.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++..... .......++..|+|||...+..++.++||||+||++|||+||+.|+.
T Consensus 148 Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~ 223 (359)
T cd07876 148 DLKPSNIVVKSDCTLKILDFGLARTACTN--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQ 223 (359)
T ss_pred CCCHHHEEECCCCCEEEecCCCccccccC--ccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999764321 12233467889999999888889999999999999999999999874
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-17 Score=177.95 Aligned_cols=101 Identities=22% Similarity=0.355 Sum_probs=83.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++..... ........++..|+|||......++.++|||||||++|||++|+.|+...
T Consensus 121 dikp~NIll~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~ 199 (323)
T cd05575 121 DLKPENILLDSQGHVVLTDFGLCKEGIEH-SKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR 199 (323)
T ss_pred CCCHHHeEECCCCcEEEeccCCCcccccC-CCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCC
Confidence 99999999999999999999998754321 11223456788999999988888899999999999999999999998631
Q ss_pred -cc--------------------hHHHHhhcccCCCCCCCCcc
Q 046589 705 -FE--------------------DKDIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 705 -~~--------------------~~~l~~~c~~~~p~~Rp~~~ 726 (729)
.. -.+++.+|++.+|++||+++
T Consensus 200 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~ 242 (323)
T cd05575 200 DTAEMYDNILNKPLRLKPNISVSARHLLEGLLQKDRTKRLGAK 242 (323)
T ss_pred CHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhCCCCC
Confidence 10 01799999999999999985
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-17 Score=171.23 Aligned_cols=104 Identities=23% Similarity=0.366 Sum_probs=84.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.++++|||++....... .......++..|+|||...+..++.++|||||||++||++||+.|+...
T Consensus 131 dl~~~nil~~~~~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~ 209 (267)
T cd08228 131 DIKPANVFITATGVVKLGDLGLGRFFSSKT-TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD 209 (267)
T ss_pred CCCHHHEEEcCCCCEEECccccceeccchh-HHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccc
Confidence 999999999999999999999988754321 1122345677899999887778889999999999999999999997421
Q ss_pred c----------------------c---hHHHHhhcccCCCCCCCCccccC
Q 046589 705 F----------------------E---DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~----------------------~---~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
- . -.+++.+||..+|++||++++|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl 259 (267)
T cd08228 210 KMNLFSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVH 259 (267)
T ss_pred cccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHH
Confidence 0 0 01799999999999999999874
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-17 Score=176.54 Aligned_cols=101 Identities=21% Similarity=0.345 Sum_probs=82.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++||||+||++|||+||+.|+...
T Consensus 126 Dikp~Nill~~~~~ikL~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~ 204 (323)
T cd05615 126 DLKLDNVMLDSEGHIKIADFGMCKEHMVDG-VTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGE 204 (323)
T ss_pred CCCHHHeEECCCCCEEEeccccccccCCCC-ccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999987643211 1122346788999999888788899999999999999999999998631
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCCCcc
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp~~~ 726 (729)
-. . .+++.+|++.+|++|++..
T Consensus 205 ~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~~p~~R~~~~ 247 (323)
T cd05615 205 DEDELFQSIMEHNVSYPKSLSKEAVSICKGLMTKHPSKRLGCG 247 (323)
T ss_pred CHHHHHHHHHhCCCCCCccCCHHHHHHHHHHcccCHhhCCCCC
Confidence 11 0 1789999999999999863
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-17 Score=169.13 Aligned_cols=105 Identities=24% Similarity=0.386 Sum_probs=83.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce--ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS--TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~--~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||.||+++.++.+|++|||+++.......... ....++..|+|||......++.++|||||||++||++| |+.|+
T Consensus 120 dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~ 199 (257)
T cd05116 120 DLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPY 199 (257)
T ss_pred ccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999987653222111 12233468999998877778889999999999999998 88887
Q ss_pred CCC----------------c----chH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPK----------------F----EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~----------------~----~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... . ..+ +++.+||+.+|++||+|++|+
T Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~ 249 (257)
T cd05116 200 KGMKGNEVTQMIESGERMECPQRCPPEMYDLMKLCWTYGVDERPGFAVVE 249 (257)
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHhccCchhCcCHHHHH
Confidence 521 0 011 899999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-17 Score=170.56 Aligned_cols=105 Identities=25% Similarity=0.481 Sum_probs=83.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||++++++.++++|||+++......... .....++..|+|||......++.++|||||||++||+++ |..|+.
T Consensus 131 di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~ 210 (266)
T cd05033 131 DLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYW 210 (266)
T ss_pred CCCcceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCC
Confidence 999999999999999999999998764211111 112234568999998887888999999999999999998 888864
Q ss_pred C-C-----------cc--------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 P-K-----------FE--------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~-----------~~--------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. . +. + .+++.+|++.+|++||++++|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~ 259 (266)
T cd05033 211 DMSNQDVIKAVEDGYRLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIV 259 (266)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHH
Confidence 1 0 00 0 1799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-18 Score=181.97 Aligned_cols=104 Identities=21% Similarity=0.299 Sum_probs=82.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC------CCCCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR------ARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~------~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||+||+++.++.+|++|||+++..............++..|+|||... ...++.++|||||||++|||+||+
T Consensus 127 Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~ 206 (330)
T cd05601 127 DIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGR 206 (330)
T ss_pred cCchHheEECCCCCEEeccCCCCeECCCCCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCC
Confidence 99999999999999999999999876533222223446788999999765 456788999999999999999999
Q ss_pred CCCCCC-----------------cc------h--HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGPK-----------------FE------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~~-----------------~~------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+... +. . .+++..|++ +|++|||+++++
T Consensus 207 ~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~ 261 (330)
T cd05601 207 SPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGLC 261 (330)
T ss_pred CCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHh
Confidence 998521 00 0 168888997 999999998763
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-17 Score=169.65 Aligned_cols=105 Identities=25% Similarity=0.433 Sum_probs=83.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.++++|||+++...............+.+|+|||......++.++|||||||++||+++ |+.|+..
T Consensus 125 dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~ 204 (256)
T cd05112 125 DLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYEN 204 (256)
T ss_pred ccccceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 999999999999999999999987653221111122334568999998887888999999999999999998 8888752
Q ss_pred Ccc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KFE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... + .+++.+||+.+|++|||+++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l 252 (256)
T cd05112 205 RSNSEVVETINAGFRLYKPRLASQSVYELMQHCWKERPEDRPSFSLLL 252 (256)
T ss_pred CCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHH
Confidence 110 0 1799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ |
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-17 Score=178.37 Aligned_cols=100 Identities=18% Similarity=0.371 Sum_probs=81.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||...+..++.++|||||||++|||+||+.|+..
T Consensus 121 Dikp~Nili~~~~~~kL~DfG~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~ 199 (329)
T cd05618 121 DLKLDNVLLDSEGHIKLTDYGMCKEGLRPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV 199 (329)
T ss_pred CCCHHHEEECCCCCEEEeeCCccccccCCC-CccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccC
Confidence 999999999999999999999987543211 112345678899999998888889999999999999999999999841
Q ss_pred ---C--------cc------------------hHHHHhhcccCCCCCCCCc
Q 046589 704 ---K--------FE------------------DKDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 704 ---~--------~~------------------~~~l~~~c~~~~p~~Rp~~ 725 (729)
. +. ..+++.+|+..+|++||+.
T Consensus 200 ~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~ 250 (329)
T cd05618 200 GSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGC 250 (329)
T ss_pred CCcCCcccccHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcCCHHHcCCC
Confidence 0 00 0178999999999999984
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.1e-18 Score=176.96 Aligned_cols=99 Identities=27% Similarity=0.451 Sum_probs=84.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCcccc---CCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYG---RARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~---~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|||+.|||+++.+.+|++|||-|..+.+ ....+||++|||||.. ..++|+-|+||||+|+...||...++|.
T Consensus 151 DiKAGNILLse~g~VKLaDFGSAsi~~P-----AnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPl 225 (948)
T KOG0577|consen 151 DIKAGNILLSEPGLVKLADFGSASIMAP-----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 225 (948)
T ss_pred hccccceEecCCCeeeeccccchhhcCc-----hhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCc
Confidence 9999999999999999999998877654 2346889999999953 3589999999999999999999999885
Q ss_pred C---------------------CCcchH--HHHhhcccCCCCCCCCcccc
Q 046589 702 G---------------------PKFEDK--DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 702 ~---------------------~~~~~~--~l~~~c~~~~p~~Rp~~~~v 728 (729)
. ..|... .++..|++.-|.+|||.+++
T Consensus 226 FnMNAMSALYHIAQNesPtLqs~eWS~~F~~Fvd~CLqKipqeRptse~l 275 (948)
T KOG0577|consen 226 FNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQERPTSEEL 275 (948)
T ss_pred cCchHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHhhCcccCCcHHHH
Confidence 4 134433 79999999999999998875
|
|
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-17 Score=172.31 Aligned_cols=103 Identities=24% Similarity=0.337 Sum_probs=84.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... ......++..|+|||...+..++.++||||+||++|||++|+.|+...
T Consensus 133 dikp~Nili~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~ 210 (288)
T cd07863 133 DLKPENILVTSGGQVKLADFGLARIYSCQM--ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN 210 (288)
T ss_pred CCCHHHEEECCCCCEEECccCccccccCcc--cCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCC
Confidence 999999999999999999999998754211 122345678899999888888899999999999999999999886311
Q ss_pred --------------------cc--------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 705 --------------------FE--------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 --------------------~~--------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|. + .+++.+|++.+|++|||+++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l 283 (288)
T cd07863 211 SEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRAL 283 (288)
T ss_pred CHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHh
Confidence 10 0 1789999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-17 Score=168.74 Aligned_cols=105 Identities=28% Similarity=0.494 Sum_probs=83.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|++|.||++++++.++++|||+++..............++..|+|||+.....++.++|||||||++||++| |+.|+..
T Consensus 127 dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~ 206 (260)
T cd05069 127 DLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPG 206 (260)
T ss_pred ccCcceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999997654322111122345578999998877888999999999999999999 7877642
Q ss_pred Ccc----------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KFE----------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~----------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.-. -.+++.+|+..+|++||++++|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~ 254 (260)
T cd05069 207 MVNREVLEQVERGYRMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQ 254 (260)
T ss_pred CCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHH
Confidence 100 01799999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-17 Score=170.79 Aligned_cols=102 Identities=23% Similarity=0.484 Sum_probs=84.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||.||+++.++.++++|||++...... ......++..|+|||+.....++.++|||||||++||++||+.|+...
T Consensus 120 dlkp~Nill~~~~~~~l~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~ 196 (279)
T cd06619 120 DVKPSNMLVNTRGQVKLCDFGVSTQLVNS---IAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQI 196 (279)
T ss_pred CCCHHHEEECCCCCEEEeeCCcceecccc---cccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhh
Confidence 99999999999999999999998765421 122346778999999988888899999999999999999999997520
Q ss_pred ----------------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 705 ----------------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ----------------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+..+ +++.+|++.+|++||++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil 251 (279)
T cd06619 197 QKNQGSLMPLQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPKERPAPENLM 251 (279)
T ss_pred cccccccchHHHHHHHhccCCCCCCCCcCCHHHHHHHHHHhhCChhhCCCHHHHh
Confidence 0001 789999999999999999874
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-17 Score=166.23 Aligned_cols=104 Identities=20% Similarity=0.268 Sum_probs=84.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||.||++++++..|++|||+|+...-. ....+...+|.||.|||..-+ ..|+..+||||+|||+.||++++.-|.+
T Consensus 145 DLKPQNlLi~~~G~lKlaDFGlAra~~ip-~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG 223 (323)
T KOG0594|consen 145 DLKPQNLLISSSGVLKLADFGLARAFSIP-MRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPG 223 (323)
T ss_pred cCCcceEEECCCCcEeeeccchHHHhcCC-cccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999976521 223567788999999997554 5799999999999999999998765541
Q ss_pred --------------------CcchH-------------------------------HHHhhcccCCCCCCCCccccC
Q 046589 704 --------------------KFEDK-------------------------------DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 --------------------~~~~~-------------------------------~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|... +++..|++.+|..|.+++.++
T Consensus 224 ~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al 300 (323)
T KOG0594|consen 224 DSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGAL 300 (323)
T ss_pred CcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHh
Confidence 22210 799999999999999987653
|
|
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-17 Score=167.92 Aligned_cols=105 Identities=19% Similarity=0.323 Sum_probs=84.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce--ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS--TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~--~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|++|+||+++.++.++++|||+++.......... ....++..|+|||...+..++.++||||+||++||+++|+.|+.
T Consensus 129 dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~ 208 (263)
T cd06625 129 DIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWA 208 (263)
T ss_pred CCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999876532111111 22356678999999888888999999999999999999999975
Q ss_pred C-Cc-c-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 P-KF-E-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~-~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .. . . .+++..|+..+|.+|||+++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll 258 (263)
T cd06625 209 EFEAMAAIFKIATQPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELL 258 (263)
T ss_pred ccchHHHHHHHhccCCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHh
Confidence 2 10 0 0 1799999999999999999874
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-17 Score=170.47 Aligned_cols=104 Identities=19% Similarity=0.397 Sum_probs=83.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-----CCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-----ARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-----~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|++++||+++.++.++++|||+++...... .......++..|+|||+.. ...++.++|||||||++|||++|+.
T Consensus 136 dl~~~nili~~~~~~~l~Dfg~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~ 214 (272)
T cd06637 136 DIKGQNVLLTENAEVKLVDFGVSAQLDRTV-GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAP 214 (272)
T ss_pred CCCHHHEEECCCCCEEEccCCCceeccccc-ccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCC
Confidence 999999999999999999999988654211 1223456778899999764 3457889999999999999999999
Q ss_pred CCCC-C--------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 700 PTGP-K--------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~-~--------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.. . +... +++.+|+..+|.+|||+++++
T Consensus 215 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il 267 (272)
T cd06637 215 PLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLM 267 (272)
T ss_pred CccccCHHHHHHHHhcCCCCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHh
Confidence 9752 0 0011 799999999999999999874
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.4e-18 Score=180.65 Aligned_cols=104 Identities=24% Similarity=0.424 Sum_probs=84.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCC----------------------------CcceecccccccccCccccCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCK----------------------------SHISTDVASAISYVPPEYGRAR 676 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~----------------------------~~~~~~~~~~~~y~ape~~~~~ 676 (729)
|+||+||+++.++.+|++|||+++...... ........++..|+|||.....
T Consensus 126 Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 205 (350)
T cd05573 126 DIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGT 205 (350)
T ss_pred CCCHHHeEECCCCCEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCC
Confidence 999999999999999999999998654322 0112234678899999998888
Q ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCCC-----------cc------------h--HHHHhhcccCCCCCCCC-ccccC
Q 046589 677 KANERDNIYRFGVVLLELVIRKQPTGPK-----------FE------------D--KDIVVGCVSDNPIAKPG-MLRVQ 729 (729)
Q Consensus 677 ~~~~~~Dv~s~G~vl~el~tg~~p~~~~-----------~~------------~--~~l~~~c~~~~p~~Rp~-~~~v~ 729 (729)
.++.++|||||||++|||++|+.|+... |. + .+++.+|+. +|.+||+ +++++
T Consensus 206 ~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll 283 (350)
T cd05573 206 PYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFPPDPPVSPEAIDLICRLLC-DPEDRLGSFEEIK 283 (350)
T ss_pred CCCCceeeEecchhhhhhccCCCCCCCCCHHHHHHHHhccCCcccCCCCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHh
Confidence 8999999999999999999999998621 10 0 178899997 9999999 88764
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-17 Score=173.24 Aligned_cols=78 Identities=27% Similarity=0.346 Sum_probs=62.5
Q ss_pred cccccceEe----cCCccEEEeecCCccccCCCCC--cceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhC
Q 046589 625 DIKASNILL----NEDFDAKVLDFGLARLISDCKS--HISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIR 697 (729)
Q Consensus 625 dlk~~nill----~~~~~~kl~dfgl~~~~~~~~~--~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg 697 (729)
|+||+||++ +..+.+|++|||+++....... .......++.+|+|||...+ ..++.++||||+||++|||+||
T Consensus 133 Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g 212 (317)
T cd07868 133 DLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTS 212 (317)
T ss_pred CCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhC
Confidence 999999999 4567999999999987643211 11224567889999998765 4578999999999999999999
Q ss_pred CCCCC
Q 046589 698 KQPTG 702 (729)
Q Consensus 698 ~~p~~ 702 (729)
+.|+.
T Consensus 213 ~~~f~ 217 (317)
T cd07868 213 EPIFH 217 (317)
T ss_pred CCCcc
Confidence 99874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-17 Score=176.41 Aligned_cols=102 Identities=20% Similarity=0.334 Sum_probs=83.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||...+..++.++||||+||++|||++|+.|+...
T Consensus 121 Dlkp~Nili~~~~~~kl~DfG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 199 (325)
T cd05602 121 DLKPENILLDSQGHIVLTDFGLCKENIEHN-GTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR 199 (325)
T ss_pred CCCHHHeEECCCCCEEEccCCCCcccccCC-CCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCC
Confidence 999999999999999999999987543211 1223456788999999988888899999999999999999999998631
Q ss_pred c-c------------------h--HHHHhhcccCCCCCCCCccc
Q 046589 705 F-E------------------D--KDIVVGCVSDNPIAKPGMLR 727 (729)
Q Consensus 705 ~-~------------------~--~~l~~~c~~~~p~~Rp~~~~ 727 (729)
- . . .+++..|++.+|.+||++.+
T Consensus 200 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~ 243 (325)
T cd05602 200 NTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKD 243 (325)
T ss_pred CHHHHHHHHHhCCcCCCCCCCHHHHHHHHHHcccCHHHCCCCCC
Confidence 0 0 0 17999999999999999864
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-17 Score=168.47 Aligned_cols=105 Identities=30% Similarity=0.525 Sum_probs=81.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc---ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH---ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~---~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++.+|++|||+++........ ......++..|+|||+.....++.++|||||||++|||+||+.|+
T Consensus 123 dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~ 202 (262)
T cd05058 123 DLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPP 202 (262)
T ss_pred ccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999998765321110 111234566799999887788899999999999999999976554
Q ss_pred CCC---------------c------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPK---------------F------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~---------------~------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... + .. .+++..||..+|++||++.+|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il 253 (262)
T cd05058 203 YPDVDSFDITVYLLQGRRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELV 253 (262)
T ss_pred CCCCCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHH
Confidence 210 0 01 1799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-17 Score=170.38 Aligned_cols=105 Identities=28% Similarity=0.445 Sum_probs=83.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.++++|||+++........ ......++..|+|||+.....++.++||||+||++|||++ |+.|+.
T Consensus 147 dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~ 226 (280)
T cd05049 147 DLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWY 226 (280)
T ss_pred ccccceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCC
Confidence 89999999999999999999998765322211 1122344678999999888889999999999999999999 998875
Q ss_pred CCc--------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PKF--------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~--------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..- .. .+++.+||+.+|++||+++||+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil 275 (280)
T cd05049 227 GLSNEEVIECITQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIH 275 (280)
T ss_pred CCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHH
Confidence 200 00 1799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-17 Score=177.37 Aligned_cols=76 Identities=29% Similarity=0.380 Sum_probs=65.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++..... .......++..|+|||...+..++.++|||||||++|||+||+.||.
T Consensus 151 Dlkp~NIll~~~~~~kL~DfG~a~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~ 226 (364)
T cd07875 151 DLKPSNIVVKSDCTLKILDFGLARTAGTS--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFP 226 (364)
T ss_pred CCCHHHEEECCCCcEEEEeCCCccccCCC--CcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999865421 11233467889999999888889999999999999999999998874
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-17 Score=178.27 Aligned_cols=71 Identities=27% Similarity=0.352 Sum_probs=61.1
Q ss_pred cccccceEecCC--ccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNED--FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~--~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+||+||||-+. ..+||+|||.|..... .......++.|+|||.+-+.+|+.+.||||||||+.||.||.+
T Consensus 314 DLKPENILL~~~~r~~vKVIDFGSSc~~~q----~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~P 386 (586)
T KOG0667|consen 314 DLKPENILLKDPKRSRIKVIDFGSSCFESQ----RVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEP 386 (586)
T ss_pred cCChhheeeccCCcCceeEEecccccccCC----cceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCcc
Confidence 999999999743 4889999999877542 1225678899999999999999999999999999999999954
|
|
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-17 Score=170.31 Aligned_cols=101 Identities=22% Similarity=0.391 Sum_probs=82.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.++++|||+++...... .......++..|+|||...+..++.++|||||||++|||+||+.|+...
T Consensus 122 dlkp~Nili~~~~~~~l~dfg~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~ 200 (280)
T cd05608 122 DLKPENVLLDNDGNVRISDLGLAVELKDGQ-SKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRAR 200 (280)
T ss_pred CCCHHHEEECCCCCEEEeeCccceecCCCC-ccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999987654321 1122346788999999988888899999999999999999999997531
Q ss_pred --cc---------------------h--HHHHhhcccCCCCCCCCcc
Q 046589 705 --FE---------------------D--KDIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 705 --~~---------------------~--~~l~~~c~~~~p~~Rp~~~ 726 (729)
.. . .+++..|+..+|++||+++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~ 247 (280)
T cd05608 201 GEKVENKELKQRILNDSVTYPDKFSPASKSFCEALLAKDPEKRLGFR 247 (280)
T ss_pred CcchhHHHHHHhhcccCCCCcccCCHHHHHHHHHHhcCCHHHhcCCC
Confidence 00 0 1799999999999999554
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-17 Score=174.22 Aligned_cols=75 Identities=29% Similarity=0.524 Sum_probs=64.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++..... ......++..|+|||...+..++.++|||||||++||+++|+.|+.
T Consensus 129 dlkp~Nili~~~~~~kL~Dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~ 203 (333)
T cd06650 129 DVKPSNILVNSRGEIKLCDFGVSGQLIDS---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIP 203 (333)
T ss_pred CCChhhEEEcCCCCEEEeeCCcchhhhhh---ccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999998765321 1123457789999998887888999999999999999999999864
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-17 Score=168.61 Aligned_cols=103 Identities=23% Similarity=0.380 Sum_probs=83.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.++++|||++....... .......++..|+|||......++.++|||||||++|||++|..|+...
T Consensus 131 dl~p~nili~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~ 209 (267)
T cd08229 131 DIKPANVFITATGVVKLGDLGLGRFFSSKT-TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD 209 (267)
T ss_pred CCCHHHEEEcCCCCEEECcchhhhccccCC-cccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccc
Confidence 999999999999999999999987654321 1122345778899999887788889999999999999999999997521
Q ss_pred cc-------------------------hHHHHhhcccCCCCCCCCcccc
Q 046589 705 FE-------------------------DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 705 ~~-------------------------~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.. -.+++.+||..+|++||||.+|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i 258 (267)
T cd08229 210 KMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDITYV 258 (267)
T ss_pred cchHHHHhhhhhcCCCCCCCcccccHHHHHHHHHhcCCCcccCCCHHHH
Confidence 00 0179999999999999999976
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-17 Score=168.88 Aligned_cols=105 Identities=23% Similarity=0.397 Sum_probs=82.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCccee-cccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST-DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~-~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||++++++.+|++|||+++........... ....+..|+|||+.....++.++|||||||++||+++ |..|+.
T Consensus 138 dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~ 217 (273)
T cd05035 138 DLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYP 217 (273)
T ss_pred ccchheEEECCCCeEEECCccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999876532221111 1234567999999888888999999999999999999 777764
Q ss_pred CCcc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PKFE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.... . .+++.+|++.+|++||++.+|+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~ 266 (273)
T cd05035 218 GVENHEIYDYLRHGNRLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLR 266 (273)
T ss_pred CCCHHHHHHHHHcCCCCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 2100 0 1899999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-17 Score=171.75 Aligned_cols=105 Identities=22% Similarity=0.365 Sum_probs=82.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||.||++++++.+|++|||+++........ ......++..|+|||......++.++||||+||++|||+| |..|+.
T Consensus 149 dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~ 228 (283)
T cd05091 149 DLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYC 228 (283)
T ss_pred ccchhheEecCCCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999998865432211 1122344678999998877788999999999999999998 776754
Q ss_pred CCcc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PKFE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.... . .+++..||+.+|++||+|++|+
T Consensus 229 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~ 277 (283)
T cd05091 229 GYSNQDVIEMIRNRQVLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIH 277 (283)
T ss_pred CCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHH
Confidence 2100 0 1799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.6e-19 Score=169.86 Aligned_cols=103 Identities=28% Similarity=0.480 Sum_probs=86.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+|+.|||+..++++|++|||+|..+..... ..-++.||+.|||||......|++++||||+|+...||..|++|+.-
T Consensus 154 DIKAGNILLNT~G~AKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDI 232 (502)
T KOG0574|consen 154 DIKAGNILLNTDGIAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDI 232 (502)
T ss_pred hcccccEEEcccchhhhhhccccchhhhhHH-hhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccc
Confidence 9999999999999999999999987653211 11257889999999999888899999999999999999999998650
Q ss_pred ---------------------CcchH--HHHhhcccCCCCCCCCcccc
Q 046589 704 ---------------------KFEDK--DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 ---------------------~~~~~--~l~~~c~~~~p~~Rp~~~~v 728 (729)
.|..+ +++..|+-.+|++|-|+-++
T Consensus 233 HPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L 280 (502)
T KOG0574|consen 233 HPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRL 280 (502)
T ss_pred cccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 23322 89999999999999987654
|
|
| >KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-17 Score=174.00 Aligned_cols=104 Identities=24% Similarity=0.412 Sum_probs=87.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHH-hCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELV-IRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~-tg~~p~~~ 703 (729)
|+.++|||+...-.+|++|||++|.+..+.....+....++.|||||...-.+++..+|||-|||.|||++ -|.+||.+
T Consensus 516 DIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqg 595 (974)
T KOG4257|consen 516 DIAARNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQG 595 (974)
T ss_pred hhhhhheeecCcceeeecccchhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCcccc
Confidence 99999999999999999999999998765544444556678999999887789999999999999999975 59999874
Q ss_pred Ccch-------------------H---HHHhhcccCCCCCCCCcccc
Q 046589 704 KFED-------------------K---DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 ~~~~-------------------~---~l~~~c~~~~p~~Rp~~~~v 728 (729)
.-.. . .++.+||+.+|.+||++.++
T Consensus 596 vkNsDVI~~iEnGeRlP~P~nCPp~LYslmskcWayeP~kRPrftei 642 (974)
T KOG4257|consen 596 VKNSDVIGHIENGERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEI 642 (974)
T ss_pred ccccceEEEecCCCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHH
Confidence 1110 0 79999999999999999875
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.1e-19 Score=185.94 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=28.5
Q ss_pred CCCcEEEcCCCcCcc----cCCcccCCCCCCCEEEccCCccccc----cCcCccCC-CCCCEEEccccc
Q 046589 406 SQLEKLDLSSNMLTG----RIPKEIGNLRSIQILKLNSNFFNGS----IPMRLGDS-TSLNILELGNNN 465 (729)
Q Consensus 406 ~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l-~~L~~L~Ls~N~ 465 (729)
+.|++|++++|.++. .+...+..+++|+++++++|.++.. +...+... +.|+.+++.+|.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 345555555555541 1223344445566666666665532 22222222 455666665554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-17 Score=171.16 Aligned_cols=104 Identities=21% Similarity=0.359 Sum_probs=84.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.++++|||+++....... ......++..|+|||+.....++.++|||||||++|||+||+.|+...
T Consensus 141 dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~ 219 (296)
T cd06654 141 DIKSDNILLGMDGSVKLTDFGFCAQITPEQS-KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE 219 (296)
T ss_pred CCCHHHEEEcCCCCEEECccccchhcccccc-ccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999999998876543211 122345678899999888777889999999999999999999997521
Q ss_pred c------------------ch------HHHHhhcccCCCCCCCCccccC
Q 046589 705 F------------------ED------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~------------------~~------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
- .+ .+++.+|+..+|++||++++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil 268 (296)
T cd06654 220 NPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELL 268 (296)
T ss_pred CHHHhHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcccCcCHHHHh
Confidence 0 00 1789999999999999999874
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-17 Score=172.50 Aligned_cols=105 Identities=22% Similarity=0.381 Sum_probs=81.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhC--CCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIR--KQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg--~~p~ 701 (729)
|+||+||+++.++.+|++|||+++......... .....++..|+|||......++.++|||||||++|||+++ ..|+
T Consensus 163 dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~ 242 (304)
T cd05096 163 DLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPY 242 (304)
T ss_pred CcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCC
Confidence 899999999999999999999998654322111 1223446789999988778889999999999999999874 4454
Q ss_pred CC-Cc--------------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP-KF--------------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~-~~--------------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .. .+ .+++.+||+.+|++||||++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~ 299 (304)
T cd05096 243 GELTDEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIH 299 (304)
T ss_pred CcCCHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHH
Confidence 31 00 00 1799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-18 Score=185.11 Aligned_cols=137 Identities=23% Similarity=0.261 Sum_probs=61.5
Q ss_pred CCCCCcEEEecCCCCCCC----CcccccCCCCCcEEEcCCCCCCCCcccc-ccccCCCCCCcEEEcCCCcCcccCCcccC
Q 046589 353 NCSMLKYIRLSNNKLSGS----IPRELNDSESLVEINLDGNMLSGTIEDV-FGRCTNLSQLEKLDLSSNMLTGRIPKEIG 427 (729)
Q Consensus 353 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 427 (729)
.+++|++|++++|.+++. ++..+...++|+.|++++|.+++..... ...+..+++|++|++++|.+++.....+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 334555555555555431 1222333345555555555544322111 11223455666677776666542221111
Q ss_pred -----CCCCCCEEEccCCcccc----ccCcCccCCCCCCEEEcccccCCcc----CchhhhcC-CCCCEEeCCCCc
Q 046589 428 -----NLRSIQILKLNSNFFNG----SIPMRLGDSTSLNILELGNNNLNGS----IPEKIADL-AQLQFLDLSYNN 489 (729)
Q Consensus 428 -----~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~LdLs~N~ 489 (729)
..+.|+.|++++|.++. .+...+..+++|+.+++++|.++.. ....+... ..|+.+|+.+|+
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 23556666666666541 1222333345555555555555533 22222222 345555555543
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-17 Score=176.31 Aligned_cols=101 Identities=23% Similarity=0.275 Sum_probs=83.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++..... ........++..|+|||......++.++||||+||++|||++|+.|+...
T Consensus 121 Dlkp~NIll~~~~~~kL~DfG~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~ 199 (325)
T cd05604 121 DLKPENILLDSQGHVVLTDFGLCKEGIAQ-SDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCR 199 (325)
T ss_pred CCCHHHeEECCCCCEEEeecCCcccCCCC-CCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCC
Confidence 99999999999999999999998754321 11223456788999999988888899999999999999999999998631
Q ss_pred cc---------------------hHHHHhhcccCCCCCCCCcc
Q 046589 705 FE---------------------DKDIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 705 ~~---------------------~~~l~~~c~~~~p~~Rp~~~ 726 (729)
-. ..+++..|+..+|.+||+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~ 242 (325)
T cd05604 200 DVAEMYDNILHKPLVLRPGASLTAWSILEELLEKDRQRRLGAK 242 (325)
T ss_pred CHHHHHHHHHcCCccCCCCCCHHHHHHHHHHhccCHHhcCCCC
Confidence 00 01789999999999999986
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-17 Score=170.52 Aligned_cols=105 Identities=21% Similarity=0.367 Sum_probs=84.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++.+.....+. .....++..|+|||+.....++.++|||||||++||+++ |+.|+.
T Consensus 142 di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~ 221 (280)
T cd05043 142 DIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYV 221 (280)
T ss_pred ccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcC
Confidence 999999999999999999999998754322221 122345678999998887888999999999999999999 888875
Q ss_pred CC----------------cc----h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PK----------------FE----D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~----------------~~----~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. +. + .+++.+||..+|++|||+.+|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~ 270 (280)
T cd05043 222 EIDPFEMAAYLKDGYRLAQPINCPDELFAVMACCWALDPEERPSFSQLV 270 (280)
T ss_pred cCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHH
Confidence 20 00 0 1799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-17 Score=175.96 Aligned_cols=100 Identities=19% Similarity=0.388 Sum_probs=81.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++||||+||++|||+||+.|++.
T Consensus 121 dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~ 199 (329)
T cd05588 121 DLKLDNVLLDAEGHIKLTDYGMCKEGIRPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV 199 (329)
T ss_pred CCCHHHeEECCCCCEEECcCccccccccCC-CccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccc
Confidence 999999999999999999999987532211 122345678899999998888889999999999999999999999852
Q ss_pred C-----------cc------------------hHHHHhhcccCCCCCCCCc
Q 046589 704 K-----------FE------------------DKDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 704 ~-----------~~------------------~~~l~~~c~~~~p~~Rp~~ 725 (729)
. +. -.+++..|+..+|++||++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~ 250 (329)
T cd05588 200 GMSDNPDQNTEDYLFQVILEKQIRIPRSLSVKASSVLKGFLNKDPKERLGC 250 (329)
T ss_pred cccccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHcCCC
Confidence 0 00 0179999999999999984
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-17 Score=175.96 Aligned_cols=104 Identities=27% Similarity=0.473 Sum_probs=91.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+|+.||++..+..+|++|||+|+.+.+.. .......||+.||+||...+..|..|+||||+||++|||++.+++|..
T Consensus 131 DlK~~Nifltk~~~VkLgDfGlaK~l~~~~-~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~ 209 (426)
T KOG0589|consen 131 DLKCANIFLTKDKKVKLGDFGLAKILNPED-SLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKAS 209 (426)
T ss_pred cchhhhhhccccCceeecchhhhhhcCCch-hhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCcc
Confidence 999999999999999999999999987533 234567899999999999999999999999999999999999999874
Q ss_pred Ccch---------------------HHHHhhcccCCCCCCCCccccC
Q 046589 704 KFED---------------------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~~---------------------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+|.. ..++..|++.+|+.||++.+++
T Consensus 210 ~m~~Li~ki~~~~~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL 256 (426)
T KOG0589|consen 210 NMSELILKINRGLYSPLPSMYSSELRSLVKSMLRKNPEHRPSALELL 256 (426)
T ss_pred chHHHHHHHhhccCCCCCccccHHHHHHHHHHhhcCCccCCCHHHHh
Confidence 3221 1799999999999999998874
|
|
| >PHA03209 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-17 Score=174.81 Aligned_cols=107 Identities=24% Similarity=0.327 Sum_probs=89.1
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
..|.....+|.|+||.||+|... ++..||+|.
T Consensus 66 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~ 145 (357)
T PHA03209 66 LGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGTTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYSSDLYT 145 (357)
T ss_pred cCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCccccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccCCcHHH
Confidence 45677778999999999999985 567888884
Q ss_pred ------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceeccccccccc
Q 046589 625 ------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYV 668 (729)
Q Consensus 625 ------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ 668 (729)
|+||.||+++.++.++++|||+++..... .......++..|+
T Consensus 146 ~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~--~~~~~~~gt~~y~ 223 (357)
T PHA03209 146 YLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVA--PAFLGLAGTVETN 223 (357)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCccccccccC--ccccccccccccc
Confidence 99999999999999999999998754321 1123456788999
Q ss_pred CccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 669 PPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 669 ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|||......++.++|||||||++|||+++..|+
T Consensus 224 aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~ 256 (357)
T PHA03209 224 APEVLARDKYNSKADIWSAGIVLFEMLAYPSTI 256 (357)
T ss_pred CCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence 999988888999999999999999999866554
|
|
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-17 Score=178.97 Aligned_cols=105 Identities=22% Similarity=0.400 Sum_probs=83.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC----CCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA----RKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~----~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++.+|++|||+++..............++..|+|||.... ..++.++||||+||++|||+||+.|
T Consensus 167 DLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~P 246 (370)
T cd05596 167 DVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTP 246 (370)
T ss_pred CCCHHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCC
Confidence 999999999999999999999998754322222234568899999997653 3478899999999999999999999
Q ss_pred CCCC-----------------cch--------HHHHhhcccCCCCC--CCCccccC
Q 046589 701 TGPK-----------------FED--------KDIVVGCVSDNPIA--KPGMLRVQ 729 (729)
Q Consensus 701 ~~~~-----------------~~~--------~~l~~~c~~~~p~~--Rp~~~~v~ 729 (729)
+... +.. .+++..|+..+|++ ||++++++
T Consensus 247 f~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell 302 (370)
T cd05596 247 FYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIK 302 (370)
T ss_pred cCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHh
Confidence 7631 010 17899999999987 99998863
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-17 Score=182.53 Aligned_cols=105 Identities=25% Similarity=0.424 Sum_probs=86.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++....... .......+|.+|+|||+.....++.++|||||||++|||+||+.|+..
T Consensus 194 Dlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~ 273 (478)
T PTZ00267 194 DLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKG 273 (478)
T ss_pred CcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999987643221 112345688999999998888899999999999999999999999763
Q ss_pred C-c-------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K-F-------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~-~-------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. . .. .+++..|+..+|+.||++++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l 321 (478)
T PTZ00267 274 PSQREIMQQVLYGKYDPFPCPVSSGMKALLDPLLSKNPALRPTTQQLL 321 (478)
T ss_pred CCHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHH
Confidence 1 0 01 1799999999999999998864
|
|
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-17 Score=178.44 Aligned_cols=103 Identities=21% Similarity=0.349 Sum_probs=83.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++|||||||++|||+||+.|+..
T Consensus 121 Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~ 199 (325)
T cd05594 121 DLKLENLMLDKDGHIKITDFGLCKEGIKDG-ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ 199 (325)
T ss_pred CCCCCeEEECCCCCEEEecCCCCeecCCCC-cccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCC
Confidence 999999999999999999999987543211 122345688999999998888889999999999999999999999853
Q ss_pred Ccc------------------h--HHHHhhcccCCCCCCC-----Ccccc
Q 046589 704 KFE------------------D--KDIVVGCVSDNPIAKP-----GMLRV 728 (729)
Q Consensus 704 ~~~------------------~--~~l~~~c~~~~p~~Rp-----~~~~v 728 (729)
... . .+++.+|++.+|++|+ +++++
T Consensus 200 ~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~i 249 (325)
T cd05594 200 DHEKLFELILMEEIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEI 249 (325)
T ss_pred CHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHH
Confidence 110 0 1799999999999997 66654
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-17 Score=174.30 Aligned_cols=101 Identities=23% Similarity=0.360 Sum_probs=82.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++||||+||++|||++|+.|+...
T Consensus 121 Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 199 (321)
T cd05603 121 DLKPENILLDSQGHVVLTDFGLCKEGVEPE-ETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSR 199 (321)
T ss_pred cCCHHHeEECCCCCEEEccCCCCccCCCCC-CccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCC
Confidence 999999999999999999999987532211 1123446788999999988888899999999999999999999998631
Q ss_pred -cc--------------------hHHHHhhcccCCCCCCCCcc
Q 046589 705 -FE--------------------DKDIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 705 -~~--------------------~~~l~~~c~~~~p~~Rp~~~ 726 (729)
.. -.+++..|++.+|++||+..
T Consensus 200 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~ 242 (321)
T cd05603 200 DVSQMYDNILHKPLQLPGGKTVAACDLLVGLLHKDQRRRLGAK 242 (321)
T ss_pred CHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHccCCHhhcCCCC
Confidence 10 11799999999999999864
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-17 Score=170.39 Aligned_cols=104 Identities=21% Similarity=0.333 Sum_probs=84.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.++++|||+++....... ......++..|+|||......++.++|||||||++||++||+.|+...
T Consensus 140 dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~ 218 (296)
T cd06655 140 DIKSDNVLLGMDGSVKLTDFGFCAQITPEQS-KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE 218 (296)
T ss_pred CCCHHHEEECCCCCEEEccCccchhcccccc-cCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999999999876543221 112345677899999888788899999999999999999999997631
Q ss_pred cc------------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 705 FE------------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~~------------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
-. -.+++.+||..+|++||++++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il 267 (296)
T cd06655 219 NPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELL 267 (296)
T ss_pred CHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHh
Confidence 00 01789999999999999999874
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-17 Score=169.15 Aligned_cols=101 Identities=22% Similarity=0.362 Sum_probs=82.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.++++|||++...... .......++.+|+|||...+..++.++|+||+||++||++||+.|+...
T Consensus 127 dikp~Nili~~~~~~kl~Dfg~~~~~~~~--~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~ 204 (285)
T cd05632 127 DLKPENILLDDYGHIRISDLGLAVKIPEG--ESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGR 204 (285)
T ss_pred CCCHHHEEECCCCCEEEecCCcceecCCC--CcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999998765321 1122346788999999987788899999999999999999999998631
Q ss_pred cc-------------------------hHHHHhhcccCCCCCCCCccc
Q 046589 705 FE-------------------------DKDIVVGCVSDNPIAKPGMLR 727 (729)
Q Consensus 705 ~~-------------------------~~~l~~~c~~~~p~~Rp~~~~ 727 (729)
.. ..+++..|++.+|++||++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ 252 (285)
T cd05632 205 KEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQE 252 (285)
T ss_pred CHHHHHHHHHHhhhccccccCccCCHHHHHHHHHHccCCHhHcCCCcc
Confidence 10 017899999999999999553
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-17 Score=169.77 Aligned_cols=104 Identities=26% Similarity=0.453 Sum_probs=84.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.++++|||+++...... .......++..|+|||+..+..++.++|||||||++||++||+.|+...
T Consensus 126 dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~ 204 (277)
T cd06642 126 DIKAANVLLSEQGDVKLADFGVAGQLTDTQ-IKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDL 204 (277)
T ss_pred CCChheEEEeCCCCEEEccccccccccCcc-hhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCccc
Confidence 999999999999999999999987654321 1112235677899999988888899999999999999999999996410
Q ss_pred ----------------c----c--hHHHHhhcccCCCCCCCCccccC
Q 046589 705 ----------------F----E--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ----------------~----~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+ . -.+++.+|++.+|++||+|++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il 251 (277)
T cd06642 205 HPMRVLFLIPKNSPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELL 251 (277)
T ss_pred chhhHHhhhhcCCCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHH
Confidence 0 0 11789999999999999999874
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-17 Score=177.32 Aligned_cols=100 Identities=21% Similarity=0.364 Sum_probs=83.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++..... .....++..|+|||...+..++.++||||+||++|||+||+.|+...
T Consensus 156 DLkp~NILl~~~~~ikL~DFG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~ 231 (340)
T PTZ00426 156 DLKPENLLLDKDGFIKMTDFGFAKVVDTR----TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYAN 231 (340)
T ss_pred CCCHHHEEECCCCCEEEecCCCCeecCCC----cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCC
Confidence 99999999999999999999999875421 22356788999999887777889999999999999999999998631
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCC-----Ccccc
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKP-----GMLRV 728 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp-----~~~~v 728 (729)
-. + .+++.+|++.+|++|+ +++++
T Consensus 232 ~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~ 281 (340)
T PTZ00426 232 EPLLIYQKILEGIIYFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNV 281 (340)
T ss_pred CHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHH
Confidence 00 0 1799999999999995 67665
|
|
| >cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-17 Score=167.37 Aligned_cols=104 Identities=28% Similarity=0.508 Sum_probs=82.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|++|+||+++.++.++++|||+++...............+..|+|||...+..++.++||||+||+++|++| |+.|+..
T Consensus 128 di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~ 207 (261)
T cd05034 128 DLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPG 207 (261)
T ss_pred CcchheEEEcCCCCEEECccccceeccchhhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999987654321111122234567999998887888999999999999999999 8888642
Q ss_pred Cc--------------c------h--HHHHhhcccCCCCCCCCcccc
Q 046589 704 KF--------------E------D--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 ~~--------------~------~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.- . . .+++.+|+..+|++||+++++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l 254 (261)
T cd05034 208 MTNREVLEQVERGYRMPRPPNCPEELYDLMLQCWDKDPEERPTFEYL 254 (261)
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHH
Confidence 10 0 0 179999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t |
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-17 Score=169.37 Aligned_cols=104 Identities=26% Similarity=0.409 Sum_probs=82.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||++++++.++++|||+++......... .....++..|+|||......++.++|||||||++|||+| |+.|+.
T Consensus 145 dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~ 224 (288)
T cd05093 145 DLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWY 224 (288)
T ss_pred ccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999998654322111 112334568999998887888999999999999999999 888764
Q ss_pred CCc--------------------c--hHHHHhhcccCCCCCCCCcccc
Q 046589 703 PKF--------------------E--DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 703 ~~~--------------------~--~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
..- . -.+++.+|++.+|.+|||+++|
T Consensus 225 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v 272 (288)
T cd05093 225 QLSNNEVIECITQGRVLQRPRTCPKEVYDLMLGCWQREPHMRLNIKEI 272 (288)
T ss_pred CCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHH
Confidence 210 0 0179999999999999999987
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-17 Score=174.26 Aligned_cols=101 Identities=20% Similarity=0.394 Sum_probs=82.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||...+..++.++|||||||++|||+||+.|+..
T Consensus 121 Dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~ 199 (327)
T cd05617 121 DLKLDNVLLDADGHIKLTDYGMCKEGLGPG-DTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDII 199 (327)
T ss_pred CCCHHHEEEeCCCCEEEeccccceeccCCC-CceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCcc
Confidence 999999999999999999999987532211 122345678899999998888889999999999999999999999842
Q ss_pred ----Ccc-----------------------hHHHHhhcccCCCCCCCCcc
Q 046589 704 ----KFE-----------------------DKDIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 704 ----~~~-----------------------~~~l~~~c~~~~p~~Rp~~~ 726 (729)
... ..+++..|+..+|++||++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~ 249 (327)
T cd05617 200 TDNPDMNTEDYLFQVILEKPIRIPRFLSVKASHVLKGFLNKDPKERLGCQ 249 (327)
T ss_pred CCCcccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCC
Confidence 000 11799999999999999864
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-17 Score=167.16 Aligned_cols=107 Identities=22% Similarity=0.384 Sum_probs=83.5
Q ss_pred eccccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCC
Q 046589 623 KKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQP 700 (729)
Q Consensus 623 k~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p 700 (729)
|+|+||+||+++.++.++++|||+++......... ......+..|+|||+.....++.++|||||||++||+++ |+.|
T Consensus 135 H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p 214 (272)
T cd05075 135 HRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTP 214 (272)
T ss_pred ccccchhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCC
Confidence 33999999999999999999999998764322111 112244567999998888888999999999999999999 6777
Q ss_pred CCCCcc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPKFE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+...-. . .+++.+||+.+|++|||+++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~ 265 (272)
T cd05075 215 YPGVENSEIYDYLRQGNRLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLR 265 (272)
T ss_pred CCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHH
Confidence 642100 0 1799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-17 Score=178.29 Aligned_cols=105 Identities=23% Similarity=0.437 Sum_probs=79.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC----------------------------------------------cce
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS----------------------------------------------HIS 658 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~----------------------------------------------~~~ 658 (729)
|+||+||+++.++++|++|||+++....... ...
T Consensus 126 DlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (381)
T cd05626 126 DIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLA 205 (381)
T ss_pred CCcHHHEEECCCCCEEEeeCcCCcccccccccccccccccccccccCcccccccccccccccccchhhcccccccccccc
Confidence 9999999999999999999999764310000 000
Q ss_pred ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----------cc------------hH--HHHhh
Q 046589 659 TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK-----------FE------------DK--DIVVG 713 (729)
Q Consensus 659 ~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~-----------~~------------~~--~l~~~ 713 (729)
....||..|+|||......++.++||||+||++|||+||+.|+... |. .+ +++.+
T Consensus 206 ~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~ 285 (381)
T cd05626 206 HSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKVINWENTLHIPPQVKLSPEAVDLITK 285 (381)
T ss_pred ccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCHHHHHHHHHccccccCCCCCCCCCHHHHHHHHH
Confidence 1246889999999888788899999999999999999999998521 11 00 55654
Q ss_pred --cccCCCCCCCCccccC
Q 046589 714 --CVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 714 --c~~~~p~~Rp~~~~v~ 729 (729)
|...+|..||++++++
T Consensus 286 ll~~~~~~~~R~~~~~~l 303 (381)
T cd05626 286 LCCSAEERLGRNGADDIK 303 (381)
T ss_pred HccCcccccCCCCHHHHh
Confidence 6677777899998863
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-17 Score=173.26 Aligned_cols=101 Identities=26% Similarity=0.329 Sum_probs=82.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..... .....++..|+|||...+ ..++.++||||+||++|||++|+.|+..
T Consensus 143 dikp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~ 218 (343)
T cd07878 143 DLKPSNVAVNEDCELRILDFGLARQADDE----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPG 218 (343)
T ss_pred cCChhhEEECCCCCEEEcCCccceecCCC----cCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCC
Confidence 99999999999999999999999875421 223467889999998765 5678999999999999999999988742
Q ss_pred -Ccc---------------------------------------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 -KFE---------------------------------------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~~---------------------------------------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... -.+++.+|+..+|++|||++|++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell 296 (343)
T cd07878 219 NDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEAL 296 (343)
T ss_pred CCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHh
Confidence 000 01678899999999999999874
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.8e-17 Score=166.26 Aligned_cols=104 Identities=24% Similarity=0.403 Sum_probs=84.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.++++|||+++....... ......++..|+|||+.....++.++|||||||++||+++|+.|+...
T Consensus 131 dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 209 (267)
T cd08224 131 DIKPANVFITATGVVKLGDLGLGRFFSSKTT-AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD 209 (267)
T ss_pred CcChhhEEECCCCcEEEeccceeeeccCCCc-ccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccC
Confidence 9999999999999999999999876543211 122345677899999887788899999999999999999999997421
Q ss_pred c------------------c-------hHHHHhhcccCCCCCCCCccccC
Q 046589 705 F------------------E-------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~------------------~-------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. . -.+++.+|+..+|++|||+.+|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il 259 (267)
T cd08224 210 KMNLYSLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVL 259 (267)
T ss_pred CccHHHHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHH
Confidence 0 0 01799999999999999999863
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-17 Score=170.44 Aligned_cols=104 Identities=18% Similarity=0.289 Sum_probs=82.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..... ........++..|+|||.... ..++.++||||+||++|||+||+.|+..
T Consensus 129 dlkp~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~ 207 (309)
T cd07872 129 DLKPQNLLINERGELKLADFGLARAKSVP-TKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPG 207 (309)
T ss_pred CCCHHHEEECCCCCEEECccccceecCCC-ccccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999998764321 111223456789999997654 5678999999999999999999988742
Q ss_pred -C-------------------cc-------------------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 -K-------------------FE-------------------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~-------------------~~-------------------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. |. ..+++.+|+..+|++|||++|++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l 284 (309)
T cd07872 208 STVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAM 284 (309)
T ss_pred CChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHh
Confidence 0 00 01689999999999999999874
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-17 Score=164.39 Aligned_cols=104 Identities=22% Similarity=0.328 Sum_probs=80.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce-ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS-TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~-~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||.||+++.++.+|++|||+++.......... .....+..|+|||......++.++|||||||++||+++ |..|+.
T Consensus 119 dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~ 198 (252)
T cd05084 119 DLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYA 198 (252)
T ss_pred ccchheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcc
Confidence 9999999999999999999999876432111111 11122456999999888888999999999999999998 777764
Q ss_pred CCcc--------------------h--HHHHhhcccCCCCCCCCcccc
Q 046589 703 PKFE--------------------D--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 703 ~~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.... . .+++.+|+..+|++|||+.+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~ 246 (252)
T cd05084 199 NLSNQQTREAIEQGVRLPCPELCPDAVYRLMERCWEYDPGQRPSFSTV 246 (252)
T ss_pred ccCHHHHHHHHHcCCCCCCcccCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 2100 0 179999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-17 Score=167.42 Aligned_cols=104 Identities=28% Similarity=0.479 Sum_probs=85.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||++++++.++++|||+++...... .......++..|+|||+..+..++.++|||||||++||++||+.|+...
T Consensus 123 dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~ 201 (274)
T cd06609 123 DIKAANILLSEEGDVKLADFGVSGQLTSTM-SKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDL 201 (274)
T ss_pred CCCHHHEEECCCCCEEEcccccceeecccc-cccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence 999999999999999999999998765321 1122345677899999988878999999999999999999999997520
Q ss_pred ---------------------cc--hHHHHhhcccCCCCCCCCccccC
Q 046589 705 ---------------------FE--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ---------------------~~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. -.+++.+|+..+|++|||+++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il 249 (274)
T cd06609 202 HPMRVLFLIPKNNPPSLEGNKFSKPFKDFVSLCLNKDPKERPSAKELL 249 (274)
T ss_pred chHHHHHHhhhcCCCCCcccccCHHHHHHHHHHhhCChhhCcCHHHHh
Confidence 01 11799999999999999999874
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-17 Score=167.00 Aligned_cols=103 Identities=29% Similarity=0.500 Sum_probs=82.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|++|+||+++.++.+|++|||.+...... ........++..|+|||......++.++|||||||++||+++ |+.|+..
T Consensus 129 dl~~~nilv~~~~~~kl~d~g~~~~~~~~-~~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~ 207 (261)
T cd05148 129 DLAARNILVGEDLVCKVADFGLARLIKED-VYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPG 207 (261)
T ss_pred ccCcceEEEcCCceEEEccccchhhcCCc-cccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCc
Confidence 99999999999999999999998775431 111122344567999998877788999999999999999998 7877652
Q ss_pred Ccc----------------------hHHHHhhcccCCCCCCCCcccc
Q 046589 704 KFE----------------------DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 ~~~----------------------~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.-. -.+++.+|++.+|++|||++++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l 254 (261)
T cd05148 208 MNNHEVYDQITAGYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKAL 254 (261)
T ss_pred CCHHHHHHHHHhCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence 100 0179999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8e-17 Score=171.82 Aligned_cols=104 Identities=21% Similarity=0.434 Sum_probs=88.2
Q ss_pred cccccceEecCC-ccEEEeecCCccccCCCCCcceecccccccccCccccCCCC-C-CchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNED-FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARK-A-NERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~-~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~-~-~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+|++||++|.+ +.+||+|||+++... .......+.+|++.|+|||.+.+.. | ..++||||+||++|.|++|+-||
T Consensus 145 DLK~ENilld~~~~~~Kl~DFG~s~~~~-~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF 223 (370)
T KOG0583|consen 145 DLKPENILLDGNEGNLKLSDFGLSAISP-GEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPF 223 (370)
T ss_pred CCCHHHEEecCCCCCEEEeccccccccC-CCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCC
Confidence 999999999998 999999999999863 1233455678999999999888755 6 47899999999999999999999
Q ss_pred C------------------CCcc--h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 G------------------PKFE--D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~------------------~~~~--~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+ +.|. . ..++.+|+..+|.+|+|+.+++
T Consensus 224 ~d~~~~~l~~ki~~~~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~ 273 (370)
T KOG0583|consen 224 DDSNVPNLYRKIRKGEFKIPSYLLSPEARSLIEKMLVPDPSTRITLLEIL 273 (370)
T ss_pred CCccHHHHHHHHhcCCccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence 8 2342 2 2799999999999999999874
|
|
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-17 Score=175.56 Aligned_cols=78 Identities=26% Similarity=0.420 Sum_probs=64.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC----------------------------------cceecccccccccCc
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS----------------------------------HISTDVASAISYVPP 670 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~----------------------------------~~~~~~~~~~~y~ap 670 (729)
|+||+||+++.++.+|++|||+++....... .......||..|+||
T Consensus 126 DlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aP 205 (363)
T cd05628 126 DIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAP 205 (363)
T ss_pred CCCHHHeEECCCCCEEEeeccCcccccccccccccccccccccccccccccccccccchhhhccccccccccCCccccCH
Confidence 9999999999999999999999875431100 001134688999999
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 671 EYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 671 e~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|......++.++|||||||++|||++|+.|+.
T Consensus 206 E~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~ 237 (363)
T cd05628 206 EVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFC 237 (363)
T ss_pred HHHcCCCCCCchhhhhhHHHHHHHHhCCCCCC
Confidence 99888888999999999999999999999986
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-17 Score=165.34 Aligned_cols=104 Identities=29% Similarity=0.494 Sum_probs=84.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|.||+++.++.++++|||++....... .......++..|+|||+..+..++.++|||||||++|||+||+.|+...
T Consensus 124 dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~ 202 (256)
T cd06612 124 DIKAGNILLNEEGQAKLADFGVSGQLTDTM-AKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDI 202 (256)
T ss_pred CCCcceEEECCCCcEEEcccccchhcccCc-cccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence 999999999999999999999988754321 1122334677899999888788899999999999999999999997520
Q ss_pred ----------------cc------h--HHHHhhcccCCCCCCCCccccC
Q 046589 705 ----------------FE------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ----------------~~------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+. . .+++..|++.+|++|||+++|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il 251 (256)
T cd06612 203 HPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLL 251 (256)
T ss_pred chhhhhhhhccCCCCCCCchhhcCHHHHHHHHHHHhcChhhCcCHHHHh
Confidence 00 1 1799999999999999999874
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-17 Score=166.59 Aligned_cols=105 Identities=26% Similarity=0.464 Sum_probs=82.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCccee--cccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST--DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~--~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||+||+++.++.++++|||+++........... ....+..|+|||+.....++.++|||||||++||++| |+.|+
T Consensus 132 dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~ 211 (268)
T cd05063 132 DLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPY 211 (268)
T ss_pred ccchhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999998865432221111 1122356999998877788999999999999999998 99997
Q ss_pred CCC----------------cc----h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPK----------------FE----D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~----------------~~----~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... .. . .+++.+||+.+|++||+|++|+
T Consensus 212 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~ 261 (268)
T cd05063 212 WDMSNHEVMKAINDGFRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIV 261 (268)
T ss_pred CcCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHH
Confidence 420 00 0 1799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-17 Score=171.74 Aligned_cols=105 Identities=26% Similarity=0.485 Sum_probs=78.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
+++++||+++.++.+|++|||+++........ ..........|+|||......++.++||||||+++||++| |+.|+.
T Consensus 128 ~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~ 207 (259)
T PF07714_consen 128 NLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFS 207 (259)
T ss_dssp T-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999876321111 1123455678999998877778999999999999999999 567754
Q ss_pred CCcc--------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PKFE--------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~~--------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..-. .. +++.+||..+|++||+|++++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~ 256 (259)
T PF07714_consen 208 DYDNEEIIEKLKQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEIL 256 (259)
T ss_dssp TSCHHHHHHHHHTTEETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHH
T ss_pred ccccccccccccccccceeccchhHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 2100 00 899999999999999999873
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3 | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-17 Score=169.38 Aligned_cols=136 Identities=25% Similarity=0.392 Sum_probs=111.6
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
..|.....+|.|++|.||+|.. .+++.||+|.
T Consensus 19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~ 98 (297)
T cd06656 19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL 98 (297)
T ss_pred hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeeccc
Confidence 4566677899999999999986 4788999986
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|+||+||+++.++.++++|||++........ ......+
T Consensus 99 ~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~-~~~~~~~ 177 (297)
T cd06656 99 AGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS-KRSTMVG 177 (297)
T ss_pred CCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccCCcc-CcCcccC
Confidence 9999999999999999999999876543221 1223456
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCc---------c---------------hHHHHhhcccCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKF---------E---------------DKDIVVGCVSDNP 719 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~---------~---------------~~~l~~~c~~~~p 719 (729)
+..|+|||......++.++|||||||++||++||+.|+...- . -.+++.+|+..+|
T Consensus 178 ~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p 257 (297)
T cd06656 178 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDV 257 (297)
T ss_pred CccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccCCh
Confidence 778999998887888899999999999999999999975210 0 0178999999999
Q ss_pred CCCCCccccC
Q 046589 720 IAKPGMLRVQ 729 (729)
Q Consensus 720 ~~Rp~~~~v~ 729 (729)
++||++++|+
T Consensus 258 ~~Rps~~~il 267 (297)
T cd06656 258 DRRGSAKELL 267 (297)
T ss_pred hhCcCHHHHh
Confidence 9999999875
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.9e-17 Score=171.32 Aligned_cols=78 Identities=27% Similarity=0.345 Sum_probs=62.3
Q ss_pred cccccceEe----cCCccEEEeecCCccccCCCCCc--ceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhC
Q 046589 625 DIKASNILL----NEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIR 697 (729)
Q Consensus 625 dlk~~nill----~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg 697 (729)
|+||+||++ +.++.+|++|||+++........ ......++.+|+|||...+ ..++.++|||||||++|||+||
T Consensus 133 Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg 212 (317)
T cd07867 133 DLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTS 212 (317)
T ss_pred CCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhC
Confidence 999999999 45679999999999875432211 1223467889999998755 4578999999999999999999
Q ss_pred CCCCC
Q 046589 698 KQPTG 702 (729)
Q Consensus 698 ~~p~~ 702 (729)
+.|+.
T Consensus 213 ~~~f~ 217 (317)
T cd07867 213 EPIFH 217 (317)
T ss_pred CCCcc
Confidence 98874
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.68 E-value=7e-17 Score=166.77 Aligned_cols=104 Identities=26% Similarity=0.384 Sum_probs=81.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC---CCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|++|.||+++.++.++++|||+++...... .......++..|+|||... ...++.++|||||||++|||++|+.|+
T Consensus 131 dl~p~nill~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~ 209 (267)
T cd06646 131 DIKGANILLTDNGDVKLADFGVAAKITATI-AKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPM 209 (267)
T ss_pred CCCHHHEEECCCCCEEECcCccceeecccc-cccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999988653211 1112345677899999763 345678999999999999999999986
Q ss_pred CC-C-----------------c------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP-K-----------------F------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~-~-----------------~------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . + .. .+++.+|++.+|++|||+++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il 263 (267)
T cd06646 210 FDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLL 263 (267)
T ss_pred cccchhhhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhCcCHHHHh
Confidence 41 0 0 01 1799999999999999999874
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.8e-17 Score=167.04 Aligned_cols=104 Identities=25% Similarity=0.453 Sum_probs=84.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.++++|||++....... .......++..|+|||+.....++.++|||||||++|||+||+.|+...
T Consensus 126 dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~ 204 (277)
T cd06640 126 DIKAANVLLSEQGDVKLADFGVAGQLTDTQ-IKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDM 204 (277)
T ss_pred CCChhhEEEcCCCCEEEcccccceeccCCc-cccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 999999999999999999999997754321 1122335677899999887778899999999999999999999997521
Q ss_pred c------------c----------hHHHHhhcccCCCCCCCCccccC
Q 046589 705 F------------E----------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~------------~----------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
- . -.+++.+||..+|++||++++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il 251 (277)
T cd06640 205 HPMRVLFLIPKNNPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELL 251 (277)
T ss_pred ChHhHhhhhhcCCCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHH
Confidence 0 0 01799999999999999999874
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6 | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-17 Score=168.10 Aligned_cols=103 Identities=25% Similarity=0.481 Sum_probs=81.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC----CCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA----RKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~----~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++.+|++|||+++..... .......++..|+|||.... ..++.++|+|||||++|||++|+.|
T Consensus 129 dlkp~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p 206 (283)
T cd06617 129 DVKPSNVLINRNGQVKLCDFGISGYLVDS--VAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFP 206 (283)
T ss_pred CCCHHHEEECCCCCEEEeecccccccccc--cccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCC
Confidence 99999999999999999999998765421 11123456788999997643 4568899999999999999999999
Q ss_pred CCC---Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGP---KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~---~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+.. .+. + .+++.+|+..+|++||++++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il 259 (283)
T cd06617 207 YDSWKTPFQQLKQVVEEPSPQLPAEKFSPEFQDFVNKCLKKNYKERPNYPELL 259 (283)
T ss_pred CCccccCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 752 000 1 1789999999999999999874
|
Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=164.22 Aligned_cols=104 Identities=19% Similarity=0.393 Sum_probs=85.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|++|+||+++.++.++++|||+++...... .......++..|+|||...+..++.++||||+||+++|+++|+.|+..
T Consensus 127 di~p~nil~~~~~~~~l~df~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~ 205 (257)
T cd08223 127 DLKTQNVFLTRTNIIKVGDLGIARVLENQC-DMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAK 205 (257)
T ss_pred CCCchhEEEecCCcEEEecccceEEecccC-CccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence 999999999999999999999998754321 122234567889999998888889999999999999999999999763
Q ss_pred Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... + .+++.+|++.+|++|||+.+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l 252 (257)
T cd08223 206 DMNSLVYRIIEGKLPPMPKDYSPELGELIATMLSKRPEKRPSVKSIL 252 (257)
T ss_pred CHHHHHHHHHhcCCCCCccccCHHHHHHHHHHhccCcccCCCHHHHh
Confidence 110 0 1799999999999999999874
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-17 Score=175.41 Aligned_cols=104 Identities=24% Similarity=0.497 Sum_probs=84.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ce-ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-IS-TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~-~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+.++|+++.....+||+|||+.+-+...++. .+ ......+.|.|||.+....++.++|||+|||.+|||.| |..|+
T Consensus 237 DLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW 316 (1039)
T KOG0199|consen 237 DLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPW 316 (1039)
T ss_pred hhhhhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCC
Confidence 99999999999999999999999987644432 22 24566788999999999999999999999999999998 44554
Q ss_pred CC-C-------cc------------hH--HHHhhcccCCCCCCCCcccc
Q 046589 702 GP-K-------FE------------DK--DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 702 ~~-~-------~~------------~~--~l~~~c~~~~p~~Rp~~~~v 728 (729)
.+ . .+ ++ +++..||+.+|++||||.++
T Consensus 317 ~G~~g~qIL~~iD~~erLpRPk~csedIY~imk~cWah~paDRptFsai 365 (1039)
T KOG0199|consen 317 VGCRGIQILKNIDAGERLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAI 365 (1039)
T ss_pred CCCCHHHHHHhccccccCCCCCCChHHHHHHHHHhccCCccccccHHHH
Confidence 31 0 00 00 79999999999999999876
|
|
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=167.31 Aligned_cols=104 Identities=21% Similarity=0.377 Sum_probs=81.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-----CCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-----ARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-----~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|++|+||+++.++.++++|||++...... ........++..|+|||+.. ...++.++|||||||++|||+||+.
T Consensus 135 dlkp~Nili~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~ 213 (292)
T cd06644 135 DLKAGNVLLTLDGDIKLADFGVSAKNVKT-LQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEP 213 (292)
T ss_pred CCCcceEEEcCCCCEEEccCccceecccc-ccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCC
Confidence 99999999999999999999988754321 11122345677899999763 3456789999999999999999999
Q ss_pred CCCC-C---------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGP-K---------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~-~---------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.. . +.. .+++.+||..+|++||++++|+
T Consensus 214 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il 267 (292)
T cd06644 214 PHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLL 267 (292)
T ss_pred CCccccHHHHHHHHhcCCCccCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHh
Confidence 9752 0 001 1789999999999999999874
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-16 Score=165.46 Aligned_cols=105 Identities=19% Similarity=0.326 Sum_probs=81.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC--cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS--HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~--~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|++|+||+++.++.++++|||+++....... .......++.+|+|||......++.++|||||||++||++||+.|+.
T Consensus 131 ~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~ 210 (266)
T cd06651 131 DIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWA 210 (266)
T ss_pred CCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCcc
Confidence 9999999999999999999999876532111 11123456788999999887888999999999999999999999975
Q ss_pred CC--c---------------c---hH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PK--F---------------E---DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~--~---------------~---~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . . .+ ..+..||..+|++||+|+||+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~p~~Rp~~~eil 259 (266)
T cd06651 211 EYEAMAAIFKIATQPTNPQLPSHISEHARDFLGCIFVEARHRPSAEELL 259 (266)
T ss_pred ccchHHHHHHHhcCCCCCCCchhcCHHHHHHHHHhcCChhhCcCHHHHh
Confidence 21 0 0 00 223378889999999999974
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development |
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.8e-17 Score=177.42 Aligned_cols=108 Identities=26% Similarity=0.349 Sum_probs=89.5
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
..|.....+|.|+||.||+|... +++.||||.
T Consensus 169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~~~L~~ 248 (461)
T PHA03211 169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWYASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYRSDLYT 248 (461)
T ss_pred CCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccCCCHHH
Confidence 35666678999999999999986 577899984
Q ss_pred ------------------------------------cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccc
Q 046589 625 ------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISY 667 (729)
Q Consensus 625 ------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y 667 (729)
|+||+||+++.++.+||+|||+++........ ......+|..|
T Consensus 249 ~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y 328 (461)
T PHA03211 249 YLGARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDT 328 (461)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCCcCC
Confidence 99999999999999999999999875432111 12245688999
Q ss_pred cCccccCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 668 VPPEYGRARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 668 ~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
+|||+..+..++.++|||||||++|||++|..|
T Consensus 329 ~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~ 361 (461)
T PHA03211 329 NAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTAS 361 (461)
T ss_pred cCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCC
Confidence 999998888899999999999999999987754
|
|
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-17 Score=169.30 Aligned_cols=105 Identities=23% Similarity=0.376 Sum_probs=83.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++......... .....++..|+|||+.....++.++|||||||++||++| |+.|+.
T Consensus 134 dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~ 213 (303)
T cd05110 134 DLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYD 213 (303)
T ss_pred ccccceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999998754322111 112344678999998888888999999999999999998 888875
Q ss_pred C-Ccc---------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFE---------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~---------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... -.+++..||..+|+.||+|++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~ 262 (303)
T cd05110 214 GIPTREIPDLLEKGERLPQPPICTIDVYMVMVKCWMIDADSRPKFKELA 262 (303)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 2 110 01689999999999999999863
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-17 Score=166.84 Aligned_cols=104 Identities=28% Similarity=0.469 Sum_probs=85.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+||.||+++.++.++++|||.++...... .......++..|+|||......++.++|||||||++|+|++|+.|+..
T Consensus 125 dl~p~nili~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~ 203 (255)
T cd08219 125 DIKSKNIFLTQNGKVKLGDFGSARLLTSPG-AYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQAN 203 (255)
T ss_pred CCCcceEEECCCCcEEEcccCcceeecccc-cccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCC
Confidence 999999999999999999999987654321 112234567789999988777889999999999999999999999863
Q ss_pred Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.+. . .+++.+||..+|++||++++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il 250 (255)
T cd08219 204 SWKNLILKVCQGSYKPLPSHYSYELRSLIKQMFKRNPRSRPSATTIL 250 (255)
T ss_pred CHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHHhCCcccCCCHHHHh
Confidence 111 0 1789999999999999999874
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-17 Score=168.79 Aligned_cols=102 Identities=23% Similarity=0.382 Sum_probs=83.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||.||++++++.++++|||+++...... ......++..|+|||......++.++||||+||++||+++|+.|+...
T Consensus 127 dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~ 204 (285)
T cd05605 127 DLKPENILLDDYGHIRISDLGLAVEIPEGE--TIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQR 204 (285)
T ss_pred CCCHHHEEECCCCCEEEeeCCCceecCCCC--ccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCC
Confidence 999999999999999999999988754211 112346788999999888788899999999999999999999998631
Q ss_pred cc-----------------------h--HHHHhhcccCCCCCCC-----Ccccc
Q 046589 705 FE-----------------------D--KDIVVGCVSDNPIAKP-----GMLRV 728 (729)
Q Consensus 705 ~~-----------------------~--~~l~~~c~~~~p~~Rp-----~~~~v 728 (729)
-. . .+++.+|+..+|++|| +++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l 258 (285)
T cd05605 205 KEKVKREEVERRVKEDQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEV 258 (285)
T ss_pred chhhHHHHHHHHhhhcccccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHH
Confidence 00 0 0799999999999999 55554
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=167.06 Aligned_cols=105 Identities=24% Similarity=0.322 Sum_probs=85.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC-CCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR-KANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~-~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++++||++++++.+|++|||++...............++.+|+|||+..+. .++.++|||||||++||+++|+.|+..
T Consensus 125 dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~ 204 (288)
T cd07833 125 DIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPG 204 (288)
T ss_pred CCCHHHeEECCCCCEEEEeeecccccCCCccccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999887654332223345667889999988776 788999999999999999999987641
Q ss_pred C-----------------------------c----------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K-----------------------------F----------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~-----------------------------~----------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. + .. .+++.+|+..+|++||++++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il 283 (288)
T cd07833 205 DSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELL 283 (288)
T ss_pred CCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHh
Confidence 0 0 00 1789999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.8e-19 Score=157.20 Aligned_cols=159 Identities=34% Similarity=0.520 Sum_probs=84.9
Q ss_pred cEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeec
Q 046589 107 VVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186 (729)
Q Consensus 107 ~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 186 (729)
.+.+.|+.|.++ .+|+-+.+|.+|++|++++|+++.. |.++++++.||.|+++-|++. ..|..|+.++.|++|||.+
T Consensus 35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhc-Chhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence 444555555554 4555555555555555555555442 344555555555555555554 5555555555555555555
Q ss_pred cCCC-ccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccccc
Q 046589 187 NSFT-GEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGN 265 (729)
Q Consensus 187 N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 265 (729)
|++. ..+|..|..|+.|+.|+|+.|.+. .+|..++++++||.|.+..|.+- ++| ..++.++.|+.|++.+|+++ .
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lp-keig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLP-KEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCc-HHHHHHHHHHHHhcccceee-e
Confidence 5554 244555555555555555555554 55555555555555555555554 344 33455555555555555555 3
Q ss_pred CCccccC
Q 046589 266 IPPEISH 272 (729)
Q Consensus 266 ~p~~l~~ 272 (729)
+|.++++
T Consensus 188 lppel~~ 194 (264)
T KOG0617|consen 188 LPPELAN 194 (264)
T ss_pred cChhhhh
Confidence 4444433
|
|
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-17 Score=176.65 Aligned_cols=100 Identities=23% Similarity=0.380 Sum_probs=79.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.++++|||+++...... .......++..|+|||.... ..++.++||||+||++|||+||+.|+..
T Consensus 121 Dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~ 199 (330)
T cd05586 121 DLKPENILLDATGHIALCDFGLSKANLTDN-KTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYA 199 (330)
T ss_pred cCCHHHeEECCCCCEEEecCCcCcCCCCCC-CCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCC
Confidence 999999999999999999999987643211 11234567889999997754 3478899999999999999999999863
Q ss_pred Ccc--------------------h--HHHHhhcccCCCCCCCCc
Q 046589 704 KFE--------------------D--KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 704 ~~~--------------------~--~~l~~~c~~~~p~~Rp~~ 725 (729)
... . .+++..|+..+|++||++
T Consensus 200 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~ 243 (330)
T cd05586 200 EDTQQMYRNIAFGKVRFPKNVLSDEGRQFVKGLLNRNPQHRLGA 243 (330)
T ss_pred CCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHHHCCCC
Confidence 110 0 178999999999999954
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-17 Score=175.38 Aligned_cols=78 Identities=23% Similarity=0.303 Sum_probs=65.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.++++|||+++......... .....++..|+|||+.....++.++|||||||++|||++|+.|+.
T Consensus 210 Dlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~ 288 (392)
T PHA03207 210 DVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLF 288 (392)
T ss_pred CCCHHHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence 999999999999999999999997654322211 124568899999999888888999999999999999999999985
|
|
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-16 Score=164.84 Aligned_cols=104 Identities=26% Similarity=0.501 Sum_probs=82.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|++|+||+++.++.++++|||.+...............++..|+|||+.....++.++|+|||||++||++| |+.|+..
T Consensus 127 dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~ 206 (260)
T cd05073 127 DLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPG 206 (260)
T ss_pred ccCcceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCC
Confidence 999999999999999999999987654322222222344567999998877788999999999999999999 8877652
Q ss_pred -Ccc-------------------hH--HHHhhcccCCCCCCCCcccc
Q 046589 704 -KFE-------------------DK--DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 -~~~-------------------~~--~l~~~c~~~~p~~Rp~~~~v 728 (729)
... .. +++.+|+..+|++||+++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l 253 (260)
T cd05073 207 MSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYI 253 (260)
T ss_pred CCHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHcccCcccCcCHHHH
Confidence 100 01 79999999999999999876
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.67 E-value=9e-17 Score=168.30 Aligned_cols=109 Identities=26% Similarity=0.434 Sum_probs=86.0
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~ 698 (729)
.+|+|+||.||+++.++.++++|||+++....... .......++..|+|||+.....++.++|||||||++|||+| |+
T Consensus 144 i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~ 223 (291)
T cd05094 144 FVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGK 223 (291)
T ss_pred eeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCC
Confidence 45559999999999999999999999976543211 11123345678999998888888999999999999999999 88
Q ss_pred CCCCCCcc----------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGPKFE----------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~~~~----------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+..... -.+++.+||+.+|++|||+++|+
T Consensus 224 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~ 276 (291)
T cd05094 224 QPWFQLSNTEVIECITQGRVLERPRVCPKEVYDIMLGCWQREPQQRLNIKEIY 276 (291)
T ss_pred CCCCCCCHHHHHHHHhCCCCCCCCccCCHHHHHHHHHHcccChhhCcCHHHHH
Confidence 88642100 01799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-17 Score=173.87 Aligned_cols=109 Identities=25% Similarity=0.437 Sum_probs=87.7
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~ 698 (729)
+||||+||+||+++.++.+|++|||+++......... .....++..|+|||......++.++|||||||++|||+| |+
T Consensus 195 ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~ 274 (338)
T cd05102 195 CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGA 274 (338)
T ss_pred EECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCC
Confidence 7999999999999999999999999998654322111 112345578999998888888999999999999999997 88
Q ss_pred CCCCC-Ccc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGP-KFE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~-~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+.. ... + .+++.+||+.+|++|||+.+++
T Consensus 275 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~ 328 (338)
T cd05102 275 SPYPGVQINEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTFSALV 328 (338)
T ss_pred CCCCCCCccHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 88753 110 0 1799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=166.91 Aligned_cols=104 Identities=24% Similarity=0.334 Sum_probs=82.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||++++++.++++|||++....... .......++.+|+|||+... ..++.++|||||||++|||+||+.|+..
T Consensus 125 ~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~ 203 (286)
T cd07846 125 DIKPENILVSQSGVVKLCDFGFARTLAAPG-EVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPG 203 (286)
T ss_pred CCCHHHEEECCCCcEEEEeeeeeeeccCCc-cccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999987654322 22233456788999998654 4567899999999999999999887632
Q ss_pred Cc--------------------------------------------------c--hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KF--------------------------------------------------E--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--------------------------------------------------~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . -.+++.+||..+|++||++++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il 281 (286)
T cd07846 204 DSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLL 281 (286)
T ss_pred CchHHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHh
Confidence 10 0 01689999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI |
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.9e-17 Score=166.99 Aligned_cols=105 Identities=26% Similarity=0.405 Sum_probs=81.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||++++++.++++|||+++......... .....++..|+|||+.....++.++|||||||++||+++ |..|+.
T Consensus 144 dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~ 223 (277)
T cd05062 144 DLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQ 223 (277)
T ss_pred CcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999987654221111 112234678999998877888999999999999999999 566654
Q ss_pred CCcc----------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 703 PKFE----------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~~----------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..-. -.+++.+|++.+|++|||+.|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l 272 (277)
T cd05062 224 GMSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 272 (277)
T ss_pred CCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 2100 01799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-17 Score=165.66 Aligned_cols=104 Identities=28% Similarity=0.505 Sum_probs=85.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||.||+++.++.++++|||.+..... .........++..|+|||... ...++.++||||+|+++++|++|+.|+..
T Consensus 123 dikp~NIl~~~~~~~~l~Dfg~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~ 201 (260)
T PF00069_consen 123 DIKPENILLDENGEVKLIDFGSSVKLSE-NNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEE 201 (260)
T ss_dssp SBSGGGEEESTTSEEEESSGTTTEESTS-TTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTT
T ss_pred cccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999875421 122233456788999999887 78889999999999999999999999774
Q ss_pred C-cch------------------------H---HHHhhcccCCCCCCCCccccC
Q 046589 704 K-FED------------------------K---DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~-~~~------------------------~---~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... . +++..|++.+|++||++++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~ 255 (260)
T PF00069_consen 202 SNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRPSAEELL 255 (260)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHH
T ss_pred ccchhhhhhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCcCHHHHh
Confidence 2 110 0 799999999999999999874
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.9e-17 Score=167.02 Aligned_cols=105 Identities=27% Similarity=0.395 Sum_probs=80.6
Q ss_pred cccccceEecCCc---cEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCC
Q 046589 625 DIKASNILLNEDF---DAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~---~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~ 699 (729)
|+||+||+++.++ .+|++|||+++......... ......+..|+|||+..+..++.++|||||||++|||+| |+.
T Consensus 141 dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~ 220 (277)
T cd05036 141 DIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYM 220 (277)
T ss_pred ccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCC
Confidence 9999999998654 68999999998764221111 112233467999999888889999999999999999997 888
Q ss_pred CCCCC--------------cc------h--HHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGPK--------------FE------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~~--------------~~------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+... +. . .+++.+|++.+|++||++.+|+
T Consensus 221 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl 272 (277)
T cd05036 221 PYPGRTNQEVMEFVTGGGRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATIL 272 (277)
T ss_pred CCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHH
Confidence 86521 00 0 1799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-18 Score=154.86 Aligned_cols=167 Identities=32% Similarity=0.473 Sum_probs=150.1
Q ss_pred cCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCC
Q 046589 124 LLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQL 203 (729)
Q Consensus 124 ~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L 203 (729)
.++++++++.|-||+|+++..+ +.+..+.+|++|++++|+|+ .+|.+++.++.|+.|+++-|++. .+|.+|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vp-pnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVP-PNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCceeecC-CcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 5678899999999999998765 56789999999999999998 89999999999999999999998 899999999999
Q ss_pred cEEEccCCCCCC-CCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccc
Q 046589 204 KSLDFSGNGFNG-TVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLG 282 (729)
Q Consensus 204 ~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~ 282 (729)
+.|||.+|++.. .+|..|..++.|+.|+|++|.+. .+| ...+++++|+.|.+..|.+. .+|.+++.+..|+++++.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp-~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILP-PDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCC-hhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 999999999864 68999999999999999999996 666 56799999999999999988 789999999999999999
Q ss_pred cccccccccccccCC
Q 046589 283 INQFTGSIQSELGNC 297 (729)
Q Consensus 283 ~n~l~~~~~~~l~~l 297 (729)
+|+++ .+|.+++++
T Consensus 182 gnrl~-vlppel~~l 195 (264)
T KOG0617|consen 182 GNRLT-VLPPELANL 195 (264)
T ss_pred cceee-ecChhhhhh
Confidence 99987 455555543
|
|
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-17 Score=168.37 Aligned_cols=104 Identities=24% Similarity=0.396 Sum_probs=83.4
Q ss_pred ccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC---CCCchhhHHHHHHHHHHHHhCCCC
Q 046589 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR---KANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 624 ~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~---~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
+|+||+||+++.++.++++|||+++...... ......++..|+|||..... .++.++|||||||++||+++|+.|
T Consensus 132 ~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p 209 (288)
T cd06616 132 RDVKPSNILLDRNGNIKLCDFGISGQLVDSI--AKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFP 209 (288)
T ss_pred cCCCHHHEEEccCCcEEEeecchhHHhccCC--ccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCC
Confidence 3999999999999999999999987654321 11233567889999987654 678999999999999999999999
Q ss_pred CCCC-------------------cch--------HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPK-------------------FED--------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~-------------------~~~--------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+... ... .+++.+|+..+|++|||+++|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~ 265 (288)
T cd06616 210 YPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELL 265 (288)
T ss_pred chhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 7410 000 1799999999999999999874
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-17 Score=176.57 Aligned_cols=105 Identities=20% Similarity=0.417 Sum_probs=80.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC----CCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR----KANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~----~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++.+|++|||+|+..............+|.+|+|||..... .++.++||||+||++|||+||+.|
T Consensus 167 DLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~P 246 (370)
T cd05621 167 DVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTP 246 (370)
T ss_pred CCCHHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCC
Confidence 9999999999999999999999987543222222345688999999976542 378899999999999999999999
Q ss_pred CCCC-----------------cch--------HHHHhhcccCCCCC--CCCccccC
Q 046589 701 TGPK-----------------FED--------KDIVVGCVSDNPIA--KPGMLRVQ 729 (729)
Q Consensus 701 ~~~~-----------------~~~--------~~l~~~c~~~~p~~--Rp~~~~v~ 729 (729)
|... +.. .+++..|+...+.. ||++++++
T Consensus 247 f~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l 302 (370)
T cd05621 247 FYADSLVGTYSKIMDHKNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIK 302 (370)
T ss_pred CCCCCHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHccCchhccCCCCHHHHh
Confidence 8621 110 16788888755543 88988763
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-16 Score=164.15 Aligned_cols=105 Identities=26% Similarity=0.524 Sum_probs=86.1
Q ss_pred eccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 623 KKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 623 k~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+|+++.||+++.++.++++|||++....... ......++..|+|||......++.++|||||||++||+++|+.|+.
T Consensus 137 H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~ 214 (269)
T cd08528 137 HRDLTPNNIMLGEDDKVTITDFGLAKQKQPES--KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFY 214 (269)
T ss_pred ecCCCHHHEEECCCCcEEEecccceeeccccc--ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCccc
Confidence 33999999999999999999999998754321 2234567788999999888888999999999999999999999965
Q ss_pred C-Cc--------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 703 P-KF--------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~--------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .. ... +++.+||+.+|++||++.||.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~ 264 (269)
T cd08528 215 STNMLSLATKIVEAVYEPLPEGMYSEDVTDVITSCLTPDAEARPDIIQVS 264 (269)
T ss_pred ccCHHHHHHHHhhccCCcCCcccCCHHHHHHHHHHCCCCCccCCCHHHHH
Confidence 2 10 001 799999999999999999873
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-16 Score=165.80 Aligned_cols=108 Identities=29% Similarity=0.447 Sum_probs=84.1
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~ 698 (729)
.+|+|+||+||++++++.+|++|||+++....... .......++..|+|||+.....++.++|||||||++|||+| |.
T Consensus 145 i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~ 224 (283)
T cd05090 145 FVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGL 224 (283)
T ss_pred eehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCC
Confidence 34448999999999999999999999976543221 11122344567999998877788999999999999999999 88
Q ss_pred CCCCC-Cc-------------------c--hHHHHhhcccCCCCCCCCcccc
Q 046589 699 QPTGP-KF-------------------E--DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 699 ~p~~~-~~-------------------~--~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.|+.. .. . ..+++.+|++.+|++||++++|
T Consensus 225 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i 276 (283)
T cd05090 225 QPYYGFSNQEVIEMVRKRQLLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDI 276 (283)
T ss_pred CCCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHH
Confidence 77642 10 0 0178999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=167.72 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=84.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.++++|||++....... .......++..|+|||......++.++|||||||++||+++|+.|+...
T Consensus 143 dlkp~Nill~~~~~~kL~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~ 221 (292)
T cd06658 143 DIKSDSILLTSDGRIKLSDFGFCAQVSKEV-PKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNE 221 (292)
T ss_pred CCCHHHEEEcCCCCEEEccCcchhhccccc-ccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999987643211 1122345778899999887778899999999999999999999997531
Q ss_pred cc------------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 705 FE------------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~~------------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. -.+++..|+..+|.+|||+++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il 270 (292)
T cd06658 222 PPLQAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQELL 270 (292)
T ss_pred CHHHHHHHHHhcCCCccccccccCHHHHHHHHHHccCChhHCcCHHHHh
Confidence 00 01688999999999999999874
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-16 Score=167.76 Aligned_cols=104 Identities=21% Similarity=0.325 Sum_probs=84.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++++||+++.++.++++|||+++...... .......++.+|+|||+.....++.++|||||||++|||++|+.|+...
T Consensus 142 dl~p~Nill~~~~~~kL~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~ 220 (297)
T cd06659 142 DIKSDSILLTLDGRVKLSDFGFCAQISKDV-PKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSD 220 (297)
T ss_pred CCCHHHeEEccCCcEEEeechhHhhccccc-ccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999987654321 1122346778999999988778899999999999999999999997421
Q ss_pred ----------------c------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 705 ----------------F------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ----------------~------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+ .. .+++..|++.+|++||++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll 269 (297)
T cd06659 221 SPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQELL 269 (297)
T ss_pred CHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCcccCcCHHHHh
Confidence 0 01 1799999999999999999874
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.1e-17 Score=175.93 Aligned_cols=103 Identities=21% Similarity=0.384 Sum_probs=80.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-------------------------------------ceecccccccc
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-------------------------------------ISTDVASAISY 667 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-------------------------------------~~~~~~~~~~y 667 (729)
|+||+||+++.++.++++|||+++........ ......||.+|
T Consensus 126 Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y 205 (364)
T cd05599 126 DIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDY 205 (364)
T ss_pred cCCHHHeEECCCCCEEEeecccceeccccccccccccccccccccccccccccccccccccchhhcccccccccccCccc
Confidence 99999999999999999999998764321100 00123578999
Q ss_pred cCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----------cc------------h--HHHHhhcccCCCCCC
Q 046589 668 VPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK-----------FE------------D--KDIVVGCVSDNPIAK 722 (729)
Q Consensus 668 ~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~-----------~~------------~--~~l~~~c~~~~p~~R 722 (729)
+|||......++.++||||+||++|||++|+.|+... |. + .+++.+|+. +|.+|
T Consensus 206 ~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~ll~-~p~~R 284 (364)
T cd05599 206 IAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQETYRKIINWKETLQFPDEVPLSPEAKDLIKRLCC-EAERR 284 (364)
T ss_pred cCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-CHhhc
Confidence 9999988888899999999999999999999997521 11 1 168888886 89999
Q ss_pred CC---cccc
Q 046589 723 PG---MLRV 728 (729)
Q Consensus 723 p~---~~~v 728 (729)
++ ++++
T Consensus 285 ~~~~~~~~l 293 (364)
T cd05599 285 LGNNGVNEI 293 (364)
T ss_pred CCCCCHHHH
Confidence 98 6665
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=166.10 Aligned_cols=104 Identities=20% Similarity=0.301 Sum_probs=81.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||+++.++.++++|||+++..... ........++..|+|||...+ ..++.++|||||||+++||+||+.|+..
T Consensus 126 dl~p~nil~~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~ 204 (285)
T cd07861 126 DLKPQNLLIDNKGVIKLADFGLARAFGIP-VRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHG 204 (285)
T ss_pred CCCHHHEEEcCCCcEEECcccceeecCCC-cccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence 99999999999999999999998764321 111223355788999997654 4568899999999999999999988752
Q ss_pred C--------------------cc----------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K--------------------FE----------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~--------------------~~----------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. |. + .+++.+|+..+|++|||+++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll 280 (285)
T cd07861 205 DSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKAL 280 (285)
T ss_pred CCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHh
Confidence 1 00 0 0699999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=163.53 Aligned_cols=105 Identities=23% Similarity=0.415 Sum_probs=82.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCccee--cccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST--DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~--~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||+||+++.++.+|++|||+++........... ...++..|+|||......++.++|||||||++||+++ |+.|+
T Consensus 120 di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~ 199 (257)
T cd05060 120 DLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPY 199 (257)
T ss_pred CcccceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999875432221111 1223457999998888888999999999999999998 88886
Q ss_pred CCC--------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPK--------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~--------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... +.. .+++.+|+..+|++||++.+|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~ 249 (257)
T cd05060 200 GEMKGAEVIAMLESGERLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELE 249 (257)
T ss_pred ccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHH
Confidence 520 001 1799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-17 Score=167.81 Aligned_cols=98 Identities=20% Similarity=0.404 Sum_probs=81.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.++++|||++....... ......++..|+|||......++.++||||+||++|||++|+.|+...
T Consensus 127 dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~ 204 (285)
T cd05630 127 DLKPENILLDDHGHIRISDLGLAVHVPEGQ--TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQR 204 (285)
T ss_pred CCCHHHEEECCCCCEEEeeccceeecCCCc--cccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999987654221 112346788999999988888899999999999999999999998631
Q ss_pred c-----c------------------h--HHHHhhcccCCCCCCCC
Q 046589 705 F-----E------------------D--KDIVVGCVSDNPIAKPG 724 (729)
Q Consensus 705 ~-----~------------------~--~~l~~~c~~~~p~~Rp~ 724 (729)
. . . .+++..|++.+|+.|||
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s 249 (285)
T cd05630 205 KKKIKREEVERLVKEVQEEYSEKFSPDARSLCKMLLCKDPKERLG 249 (285)
T ss_pred CccchHHHHHhhhhhhhhhcCccCCHHHHHHHHHHhhcCHHHccC
Confidence 1 0 0 17899999999999999
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-17 Score=173.88 Aligned_cols=102 Identities=25% Similarity=0.428 Sum_probs=83.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++|||||||++|||+||+.|+...
T Consensus 123 dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~ 201 (318)
T cd05582 123 DLKPENILLDEEGHIKLTDFGLSKESIDHE-KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGK 201 (318)
T ss_pred CCCHHHeEECCCCcEEEeeccCCcccCCCC-CceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCC
Confidence 999999999999999999999987654321 1223456788999999887778889999999999999999999998631
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCCCccc
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKPGMLR 727 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp~~~~ 727 (729)
-. . .+++.+|++.+|++||++.+
T Consensus 202 ~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~ 245 (318)
T cd05582 202 DRKETMTMILKAKLGMPQFLSPEAQSLLRALFKRNPANRLGAGP 245 (318)
T ss_pred CHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence 00 0 17999999999999999655
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-16 Score=163.16 Aligned_cols=104 Identities=22% Similarity=0.366 Sum_probs=81.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce--ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS--TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~--~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||.||+++.++.+|++|||+++.......... ....++..|+|||......++.++|||||||++||+++ |+.|+
T Consensus 120 dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~ 199 (257)
T cd05115 120 DLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPY 199 (257)
T ss_pred ccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999986543221111 11223467999998877788999999999999999996 88887
Q ss_pred CCC----c----------------ch--HHHHhhcccCCCCCCCCcccc
Q 046589 702 GPK----F----------------ED--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 702 ~~~----~----------------~~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
... + .+ .+++.+||+.+|++||++++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i 248 (257)
T cd05115 200 KKMKGPEVMSFIEQGKRLDCPAECPPEMYALMKDCWIYKWEDRPNFAKV 248 (257)
T ss_pred CcCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 520 0 00 179999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-17 Score=176.92 Aligned_cols=103 Identities=25% Similarity=0.325 Sum_probs=82.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
||.++|+|++.+..+||+|||+++...... ........+..|+|||...+.-++.++|||||||++||+.+ |..|+.+
T Consensus 287 DIAARNcL~~~~~~vKISDFGLs~~~~~~~-~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g 365 (474)
T KOG0194|consen 287 DIAARNCLYSKKGVVKISDFGLSRAGSQYV-MKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPG 365 (474)
T ss_pred hHhHHHheecCCCeEEeCccccccCCccee-eccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCC
Confidence 999999999999999999999998754111 11112345689999999988899999999999999999988 7777653
Q ss_pred -Ccc----------------------hHHHHhhcccCCCCCCCCcccc
Q 046589 704 -KFE----------------------DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 -~~~----------------------~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.+. -..++..||..+|++||+|.+|
T Consensus 366 ~~~~~v~~kI~~~~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i 413 (474)
T KOG0194|consen 366 MKNYEVKAKIVKNGYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTI 413 (474)
T ss_pred CCHHHHHHHHHhcCccCCCCCCCHHHHHHHHHHhccCChhhccCHHHH
Confidence 111 0068889999999999999876
|
|
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.4e-17 Score=174.73 Aligned_cols=104 Identities=21% Similarity=0.403 Sum_probs=79.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC----CCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR----KANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~----~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++.+|++|||+++..............+|..|+|||..... .++.++||||+||++|||++|+.|
T Consensus 167 DLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~P 246 (371)
T cd05622 167 DVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTP 246 (371)
T ss_pred CCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCC
Confidence 9999999999999999999999987643222222345688999999976532 378899999999999999999999
Q ss_pred CCCC-----------------cch--------HHHHhhcccCCCCC--CCCcccc
Q 046589 701 TGPK-----------------FED--------KDIVVGCVSDNPIA--KPGMLRV 728 (729)
Q Consensus 701 ~~~~-----------------~~~--------~~l~~~c~~~~p~~--Rp~~~~v 728 (729)
+... +.. .+++.+|+...+.+ ||+++++
T Consensus 247 f~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei 301 (371)
T cd05622 247 FYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEI 301 (371)
T ss_pred CCCCCHHHHHHHHHcCCCcccCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHH
Confidence 8621 100 16888999744433 7788765
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-16 Score=162.09 Aligned_cols=105 Identities=20% Similarity=0.339 Sum_probs=81.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce-ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS-TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~-~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|++|+||+++.++.++++|||+++.......... .....+..|+|||...+..++.++|||||||++||++| |..|+.
T Consensus 118 di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~ 197 (251)
T cd05041 118 DLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYP 197 (251)
T ss_pred hcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCc
Confidence 9999999999999999999999876542111111 11223457999998877788999999999999999999 777754
Q ss_pred CC------------cc----------hHHHHhhcccCCCCCCCCccccC
Q 046589 703 PK------------FE----------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~------------~~----------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. +. -.+++.+|+..+|++|||++||+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell 246 (251)
T cd05041 198 GMSNQQTRERIESGYRMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIY 246 (251)
T ss_pred cCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHH
Confidence 20 00 01799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-16 Score=164.08 Aligned_cols=101 Identities=27% Similarity=0.486 Sum_probs=81.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++...... .....+..|+|||+.....++.++|||||||++|||++ |+.|+..
T Consensus 127 dlkp~nil~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~ 202 (256)
T cd05082 127 DLAARNVLVSEDNVAKVSDFGLTKEASSTQ----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR 202 (256)
T ss_pred ccchheEEEcCCCcEEecCCccceeccccC----CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999987644211 12234567999998887888999999999999999998 8877642
Q ss_pred -Ccc---------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 -KFE---------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~~---------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.+. -.+++.+|+..+|++|||+++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~ 250 (256)
T cd05082 203 IPLKDVVPRVEKGYKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLR 250 (256)
T ss_pred CCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHH
Confidence 110 01799999999999999999863
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-16 Score=165.40 Aligned_cols=104 Identities=23% Similarity=0.359 Sum_probs=82.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-----CCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-----ARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-----~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+||+||+++.++.++++|||+++..... ........++..|+|||+.. ...++.++|||||||++|||++|+.
T Consensus 128 dlkp~nili~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~ 206 (282)
T cd06643 128 DLKAGNILFTLDGDIKLADFGVSAKNTRT-IQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEP 206 (282)
T ss_pred CCCcccEEEccCCCEEEcccccccccccc-ccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCC
Confidence 99999999999999999999998764321 11122345778899999763 3456789999999999999999999
Q ss_pred CCCC-C---------------------cc--hHHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGP-K---------------------FE--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~-~---------------------~~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.. . +. -.+++.+||+.+|++||++++++
T Consensus 207 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il 260 (282)
T cd06643 207 PHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLL 260 (282)
T ss_pred CccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 9752 0 11 11899999999999999999874
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-16 Score=165.38 Aligned_cols=106 Identities=28% Similarity=0.430 Sum_probs=82.9
Q ss_pred ccccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 624 ~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
+|+||+||++++++.++++|||+++......... .....++..|+|||......++.++|||||||++|||+| |+.|+
T Consensus 146 ~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~ 225 (280)
T cd05092 146 RDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPW 225 (280)
T ss_pred ccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCC
Confidence 3999999999999999999999987654221111 112234567999998888888999999999999999999 88876
Q ss_pred CC-C-------------cc------h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP-K-------------FE------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~-~-------------~~------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . +. . .+++.+||+.+|++||++++|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~ 275 (280)
T cd05092 226 YQLSNTEAIECITQGRELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIH 275 (280)
T ss_pred ccCCHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHH
Confidence 41 0 00 0 1899999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-16 Score=166.75 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=82.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.++++|||+++...... .......++..|+|||.... ..++.++||||+||++|||+||+.|+..
T Consensus 129 dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~ 207 (301)
T cd07873 129 DLKPQNLLINERGELKLADFGLARAKSIPT-KTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPG 207 (301)
T ss_pred CCCHHHEEECCCCcEEECcCcchhccCCCC-CcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999987643211 11223455788999997654 4578899999999999999999988641
Q ss_pred --------------------Ccc-------------------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 --------------------KFE-------------------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 --------------------~~~-------------------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|. -.+++.+|+..+|++|||++|++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil 284 (301)
T cd07873 208 STVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAM 284 (301)
T ss_pred CCHHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHh
Confidence 010 01699999999999999999874
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-16 Score=165.75 Aligned_cols=100 Identities=29% Similarity=0.450 Sum_probs=81.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC---CCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|++|+||+++.++.++++|||+++..... ....++..|+|||... ...++.++|||||||++||++||+.|+
T Consensus 140 dl~p~nIl~~~~~~~kL~dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~ 214 (307)
T cd06607 140 DIKAGNILLTEPGTVKLADFGSASLVSPA-----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 214 (307)
T ss_pred CCCcccEEECCCCCEEEeecCcceecCCC-----CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999998765421 2235667899999763 356788999999999999999999986
Q ss_pred CCC---------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPK---------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~---------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... |.+. +++.+||+.+|++||+|++|+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il 265 (307)
T cd06607 215 FNMNAMSALYHIAQNDSPTLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELL 265 (307)
T ss_pred CCccHHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhcCChhhCcCHHHHh
Confidence 520 1111 789999999999999999874
|
Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-17 Score=173.65 Aligned_cols=104 Identities=22% Similarity=0.459 Sum_probs=84.4
Q ss_pred cccccceEec-CCccEEEeecCCccccCCCCCcceecccccccccCccccCC--CCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLN-EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA--RKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~--~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+|..|+|+. -.|.+||+|||-++.+..- ...+.+..||.-|||||.... ..|...+|||||||.+.||+||++||
T Consensus 700 DIKGDNVLvNTySGvlKISDFGTsKRLAgi-nP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF 778 (1226)
T KOG4279|consen 700 DIKGDNVLVNTYSGVLKISDFGTSKRLAGI-NPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPF 778 (1226)
T ss_pred cccCCcEEEeeccceEEecccccchhhccC-CccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCe
Confidence 9999999997 5799999999988876531 123345688999999997754 46788999999999999999999998
Q ss_pred CC------------------Ccch------HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP------------------KFED------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~------------------~~~~------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .+.+ ..++++|+.++|.+||++.+++
T Consensus 779 ~ElgspqAAMFkVGmyKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL 830 (1226)
T KOG4279|consen 779 VELGSPQAAMFKVGMYKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLL 830 (1226)
T ss_pred eecCChhHhhhhhcceecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhc
Confidence 61 1111 1799999999999999998764
|
|
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-16 Score=165.28 Aligned_cols=104 Identities=22% Similarity=0.348 Sum_probs=81.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.++++|||+++...... .......++..|+|||...+ ..++.++|||||||++|||+||+.|+..
T Consensus 124 dl~~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~ 202 (284)
T cd07839 124 DLKPQNLLINKNGELKLADFGLARAFGIPV-RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP 202 (284)
T ss_pred CCCHHHEEEcCCCcEEECccchhhccCCCC-CCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcC
Confidence 999999999999999999999987654211 11223456788999997655 3468899999999999999999988531
Q ss_pred C---------------------c---------------------c-------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K---------------------F---------------------E-------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~---------------------~---------------------~-------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. | . + .+++.+|++.+|++|||+++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il 279 (284)
T cd07839 203 GNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEAL 279 (284)
T ss_pred CCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHh
Confidence 0 0 0 0 1699999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-16 Score=162.72 Aligned_cols=105 Identities=22% Similarity=0.413 Sum_probs=84.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-----cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-----HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-----~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|++|.||+++.++.++++|||+++....... .......++..|+|||+..+..++.++||||+||++||++||+.
T Consensus 127 dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~ 206 (265)
T cd06631 127 DIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKP 206 (265)
T ss_pred CcCHHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998876432111 01123456788999999888888999999999999999999999
Q ss_pred CCCC-C-cc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGP-K-FE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~-~-~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.. . .. . .+++.+|+..+|++||++++|+
T Consensus 207 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l 260 (265)
T cd06631 207 PLASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHERPSALQLL 260 (265)
T ss_pred ccccCChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHh
Confidence 9752 0 00 0 1789999999999999999874
|
Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. |
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-16 Score=149.91 Aligned_cols=134 Identities=25% Similarity=0.432 Sum_probs=115.8
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|.....+|.|.||.||.|+.. ++-.||+|.
T Consensus 22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLil 101 (281)
T KOG0580|consen 22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLIL 101 (281)
T ss_pred hhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEEE
Confidence 67888899999999999999985 666889986
Q ss_pred -----------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcc
Q 046589 625 -----------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHI 657 (729)
Q Consensus 625 -----------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~ 657 (729)
|+||+|+|++.++..|++|||.+.......
T Consensus 102 Eya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~k--- 178 (281)
T KOG0580|consen 102 EYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSNK--- 178 (281)
T ss_pred EecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCCceeecCCCC---
Confidence 999999999999999999999887754322
Q ss_pred eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcc---------------------hHHHHhhccc
Q 046589 658 STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFE---------------------DKDIVVGCVS 716 (729)
Q Consensus 658 ~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~---------------------~~~l~~~c~~ 716 (729)
-.+.+||+-|.|||...+...+..+|+|++|++.||++.|.+||.-... ..+++.+|+.
T Consensus 179 R~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~~~~~p~~is~~a~dlI~~ll~ 258 (281)
T KOG0580|consen 179 RKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKVDLKFPSTISGGAADLISRLLV 258 (281)
T ss_pred ceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHccccCCcccChhHHHHHHHHhc
Confidence 2356889999999999999999999999999999999999999873211 1189999999
Q ss_pred CCCCCCCCccccC
Q 046589 717 DNPIAKPGMLRVQ 729 (729)
Q Consensus 717 ~~p~~Rp~~~~v~ 729 (729)
.+|.+|.+..||+
T Consensus 259 ~~p~~r~~l~~v~ 271 (281)
T KOG0580|consen 259 KNPIERLALTEVM 271 (281)
T ss_pred cCccccccHHHHh
Confidence 9999999988874
|
|
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-16 Score=165.59 Aligned_cols=107 Identities=23% Similarity=0.412 Sum_probs=82.9
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQ 699 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~ 699 (729)
+||+|+||+||++++++.+|++|||++...... ........+..|+|||+.....++.++|||||||++|||+| |+.
T Consensus 140 ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~ 217 (297)
T cd05089 140 FIHRDLAARNVLVGENLASKIADFGLSRGEEVY--VKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGT 217 (297)
T ss_pred cccCcCCcceEEECCCCeEEECCcCCCccccce--eccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCC
Confidence 345599999999999999999999998653211 00111223457999998877888999999999999999998 888
Q ss_pred CCCCCc--------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 700 PTGPKF--------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~~~--------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.... ... +++.+|++.+|.+||++++++
T Consensus 218 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~ 269 (297)
T cd05089 218 PYCGMTCAELYEKLPQGYRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQIS 269 (297)
T ss_pred CCCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 875210 011 899999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-16 Score=177.24 Aligned_cols=105 Identities=26% Similarity=0.383 Sum_probs=84.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce--------ecccccccccCcccc---CCCCCCchhhHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS--------TDVASAISYVPPEYG---RARKANERDNIYRFGVVLLE 693 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~--------~~~~~~~~y~ape~~---~~~~~~~~~Dv~s~G~vl~e 693 (729)
|||.+|||++.++.-|+||||-|.......+... -....|+-|+|||+. .+..+++|+||||+||++|-
T Consensus 171 DLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYk 250 (738)
T KOG1989|consen 171 DLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYK 250 (738)
T ss_pred hhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHH
Confidence 9999999999999999999997765332221111 024678899999953 46889999999999999999
Q ss_pred HHhCCCCCCCC-----------cc--------hHHHHhhcccCCCCCCCCccccC
Q 046589 694 LVIRKQPTGPK-----------FE--------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 694 l~tg~~p~~~~-----------~~--------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+....||+.. +. -.+|+..|++++|++||++.+|+
T Consensus 251 LCy~t~PFe~sg~laIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~ 305 (738)
T KOG1989|consen 251 LCYFTTPFEESGKLAILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVL 305 (738)
T ss_pred HHHhCCCcCcCcceeEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHH
Confidence 99999999832 11 11899999999999999998873
|
|
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-16 Score=165.43 Aligned_cols=105 Identities=23% Similarity=0.348 Sum_probs=82.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc--eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI--STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~--~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.++++|||+++......... .....++..|+|||......++.++|||||||++|||+||+.|+.
T Consensus 132 dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~ 211 (283)
T cd05080 132 DLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQ 211 (283)
T ss_pred ccChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999998754321110 112234567999998877788999999999999999999998864
Q ss_pred CCc-----------------------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PKF-----------------------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~-----------------------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... ... +++.+||+.+|++|||+++|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~ 275 (283)
T cd05080 212 SPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLI 275 (283)
T ss_pred CCcchhhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHH
Confidence 100 001 799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-16 Score=161.99 Aligned_cols=104 Identities=24% Similarity=0.429 Sum_probs=83.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC---CCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR---KANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~---~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|++|+||+++.++.++++|||++...... ........++..|+|||..... .++.++|||||||++|||+||+.|+
T Consensus 126 dl~p~ni~i~~~~~~~l~d~g~~~~~~~~-~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~ 204 (262)
T cd06613 126 DIKGANILLTEDGDVKLADFGVSAQLTAT-IAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPM 204 (262)
T ss_pred CCChhhEEECCCCCEEECccccchhhhhh-hhccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999998765421 1112234567789999987665 7889999999999999999999997
Q ss_pred CC-C--------------c---------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP-K--------------F---------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~-~--------------~---------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . . .. .+++.+||..+|++|||+++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il 258 (262)
T cd06613 205 FDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLL 258 (262)
T ss_pred CCCCHHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChhhCCCHHHHh
Confidence 52 0 0 01 1799999999999999999875
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3 | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-16 Score=164.08 Aligned_cols=104 Identities=25% Similarity=0.442 Sum_probs=84.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.++++|||+++..... ........++.+|+|||+.....++.++|||||||++||++||+.|+...
T Consensus 126 dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~ 204 (277)
T cd06641 126 DIKAANVLLSEHGEVKLADFGVAGQLTDT-QIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSEL 204 (277)
T ss_pred CCCHHhEEECCCCCEEEeecccceecccc-hhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCcc
Confidence 99999999999999999999998765431 11122335677899999887778889999999999999999999997521
Q ss_pred c----------------------chHHHHhhcccCCCCCCCCccccC
Q 046589 705 F----------------------EDKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~----------------------~~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .-.+++.+|++.+|+.||++++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l 251 (277)
T cd06641 205 HPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELL 251 (277)
T ss_pred chHHHHHHHhcCCCCCCCcccCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 0 011799999999999999999874
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int |
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-16 Score=164.29 Aligned_cols=104 Identities=23% Similarity=0.367 Sum_probs=82.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC---CCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++.++++|||++...... ........++..|+|||... ...++.++||||+||++|||++|+.|+
T Consensus 131 dlkp~nili~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~ 209 (267)
T cd06645 131 DIKGANILLTDNGHVKLADFGVSAQITAT-IAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPM 209 (267)
T ss_pred CCCHHHEEECCCCCEEECcceeeeEccCc-ccccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999998765421 11122346778999999763 456788999999999999999999986
Q ss_pred CC--C----------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP--K----------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~--~----------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . |.+ .+++.+|++.+|++||++++|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll 263 (267)
T cd06645 210 FDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLL 263 (267)
T ss_pred ccccchhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhCcCHHHHh
Confidence 41 0 001 1699999999999999999874
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-16 Score=162.79 Aligned_cols=104 Identities=21% Similarity=0.411 Sum_probs=80.9
Q ss_pred cccccceEecC-CccEEEeecCCccccCCCCCcceecccccccccCccccCCC--CCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNE-DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR--KANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~--~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||.||+++. ++.++++|||++....... .......++..|+|||+.... .++.++|||||||++||+++|+.|+
T Consensus 133 dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~ 211 (268)
T cd06624 133 DIKGDNVLVNTYSGVVKISDFGTSKRLAGIN-PCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPF 211 (268)
T ss_pred CCCHHHEEEcCCCCeEEEecchhheecccCC-CccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCC
Confidence 99999999986 6799999999987653211 112233567889999987543 3788999999999999999999997
Q ss_pred CC-C------cc-----------------hHHHHhhcccCCCCCCCCccccC
Q 046589 702 GP-K------FE-----------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~-~------~~-----------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . +. -.+++.+|++.+|++|||+++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll 263 (268)
T cd06624 212 IELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLL 263 (268)
T ss_pred ccccChhhhHhhhhhhccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHH
Confidence 52 0 00 01699999999999999999874
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-16 Score=164.19 Aligned_cols=104 Identities=23% Similarity=0.340 Sum_probs=82.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.++++|||++........ ......++..|+|||...+ ..++.++|||||||++|||+||+.|+..
T Consensus 125 dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~ 203 (286)
T cd07847 125 DVKPENILITKQGQIKLCDFGFARILTGPGD-DYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPG 203 (286)
T ss_pred CCChhhEEEcCCCcEEECccccceecCCCcc-cccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999987653221 1223356778999998654 5578899999999999999999988641
Q ss_pred Cc--------------------------------------------------c--hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KF--------------------------------------------------E--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--------------------------------------------------~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.- . ..+++.+|++.+|++||++++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil 281 (286)
T cd07847 204 KSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELL 281 (286)
T ss_pred CChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHh
Confidence 00 0 01789999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio |
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.6e-17 Score=182.07 Aligned_cols=105 Identities=27% Similarity=0.447 Sum_probs=80.4
Q ss_pred cccccceEecCCccEEEeecCCccccC-----------------CCCCcceecccccccccCccccCCC---CCCchhhH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLIS-----------------DCKSHISTDVASAISYVPPEYGRAR---KANERDNI 684 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~-----------------~~~~~~~~~~~~~~~y~ape~~~~~---~~~~~~Dv 684 (729)
|+||.||++|++..+||+|||+|.... .......+..+||.-|+|||.+... .|+.|+|+
T Consensus 722 DLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDm 801 (1351)
T KOG1035|consen 722 DLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDM 801 (1351)
T ss_pred cCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhh
Confidence 999999999999999999999998711 0111223456888899999987654 49999999
Q ss_pred HHHHHHHHHHHh-----------------CCCCCCCC-cc-----hHHHHhhcccCCCCCCCCccccC
Q 046589 685 YRFGVVLLELVI-----------------RKQPTGPK-FE-----DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 685 ~s~G~vl~el~t-----------------g~~p~~~~-~~-----~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
||+|||+.||+. |.-|...+ |. +..++.+.++++|.+|||+.|++
T Consensus 802 YSLGIVlFEM~yPF~TsMERa~iL~~LR~g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL 869 (1351)
T KOG1035|consen 802 YSLGIVLFEMLYPFGTSMERASILTNLRKGSIPEPADFFDPEHPEEASLIRWLLSHDPSKRPTATELL 869 (1351)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHhcccCCCCCCcccccccchHHHHHHHHHhcCCCccCCCHHHHh
Confidence 999999999962 22222110 11 22799999999999999999874
|
|
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-16 Score=163.10 Aligned_cols=104 Identities=23% Similarity=0.382 Sum_probs=82.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.++++|||+++..........+....+..|+|||......++.++|||||||++||+++ |+.|+..
T Consensus 132 dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~ 211 (270)
T cd05056 132 DIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQG 211 (270)
T ss_pred ccChheEEEecCCCeEEccCceeeecccccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999988765322211222233467999998877788999999999999999986 9988752
Q ss_pred Ccc----------------------hHHHHhhcccCCCCCCCCcccc
Q 046589 704 KFE----------------------DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 ~~~----------------------~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.-. -.+++.+|+..+|++|||+.++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~ 258 (270)
T cd05056 212 VKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTEL 258 (270)
T ss_pred CCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 100 0179999999999999999886
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-16 Score=167.11 Aligned_cols=108 Identities=26% Similarity=0.444 Sum_probs=84.3
Q ss_pred eeccccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCC
Q 046589 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQ 699 (729)
Q Consensus 622 vk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~ 699 (729)
||+|+||+||+++.++.+|++|||+++......... .....++..|+|||......++.++|||||||++||+++ |..
T Consensus 154 vH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~ 233 (293)
T cd05053 154 IHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGS 233 (293)
T ss_pred cccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCC
Confidence 455999999999999999999999998754322111 112234567999998877888999999999999999998 888
Q ss_pred CCCC-Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGP-KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~-~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.. ... . .+++.+|+..+|++|||+++++
T Consensus 234 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil 285 (293)
T cd05053 234 PYPGIPVEELFKLLKEGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLV 285 (293)
T ss_pred CCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHH
Confidence 7642 110 0 1799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-16 Score=182.60 Aligned_cols=101 Identities=25% Similarity=0.344 Sum_probs=80.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-----------------cceecccccccccCccccCCCCCCchhhHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-----------------HISTDVASAISYVPPEYGRARKANERDNIYRF 687 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-----------------~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~ 687 (729)
|+||+||+++.++.++++|||+++....... .......||.+|+|||...+..++.++|||||
T Consensus 138 DLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSL 217 (932)
T PRK13184 138 DLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYAL 217 (932)
T ss_pred CCchheEEEcCCCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHH
Confidence 9999999999999999999999987521100 00112468899999999888888999999999
Q ss_pred HHHHHHHHhCCCCCCCCc----------------------ch--HHHHhhcccCCCCCCCCc
Q 046589 688 GVVLLELVIRKQPTGPKF----------------------ED--KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 688 G~vl~el~tg~~p~~~~~----------------------~~--~~l~~~c~~~~p~~Rp~~ 725 (729)
||++|||+||+.|+...- .+ .+++.+|++.+|++||+.
T Consensus 218 GVILyELLTG~~PF~~~~~~ki~~~~~i~~P~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss 279 (932)
T PRK13184 218 GVILYQMLTLSFPYRRKKGRKISYRDVILSPIEVAPYREIPPFLSQIAMKALAVDPAERYSS 279 (932)
T ss_pred HHHHHHHHHCCCCCCCcchhhhhhhhhccChhhccccccCCHHHHHHHHHHccCChhhCcCH
Confidence 999999999999975210 00 178999999999999764
|
|
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-16 Score=161.40 Aligned_cols=105 Identities=28% Similarity=0.551 Sum_probs=84.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc--ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|++|+||+++.++.+|++|||+++........ ......++.+|+|||+.....++.++|||||||++|||+| |+.|+
T Consensus 122 di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~ 201 (257)
T cd05040 122 DLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPW 201 (257)
T ss_pred ccCcccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999876432211 1112356678999999888888999999999999999999 99987
Q ss_pred CC---------------Ccc------h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP---------------KFE------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~---------------~~~------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .+. . .+++.+|++.+|++||++++|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~ 252 (257)
T cd05040 202 AGLSGSQILKKIDKEGERLERPEACPQDIYNVMLQCWAHNPADRPTFAALR 252 (257)
T ss_pred CCCCHHHHHHHHHhcCCcCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHH
Confidence 41 000 0 0799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3 | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-16 Score=163.36 Aligned_cols=104 Identities=22% Similarity=0.316 Sum_probs=81.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC-CCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR-KANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~-~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||+++.++.+|++|||+++...... .......++.+|+|||...+. .++.++|||||||++||++||+.|+..
T Consensus 125 ~l~p~nill~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~ 203 (284)
T cd07860 125 DLKPQNLLINTEGAIKLADFGLARAFGVPV-RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPG 203 (284)
T ss_pred CCCHHHEEECCCCCEEEeeccchhhcccCc-cccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence 999999999999999999999987653211 112233457789999976543 358889999999999999999988632
Q ss_pred C------------------------------------cc------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K------------------------------------FE------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~------------------------------------~~------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. |. . .+++.+|++.+|++|||+++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l 279 (284)
T cd07860 204 DSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAAL 279 (284)
T ss_pred CCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHh
Confidence 0 00 0 1589999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex |
| >KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-16 Score=173.10 Aligned_cols=104 Identities=25% Similarity=0.418 Sum_probs=86.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce-ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS-TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~-~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+.++|||+..-.++||.|||+|++..+++.... ...+..+.|||-|......++.++|||||||.+||++| |.+|.+
T Consensus 823 dLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~ 902 (1177)
T KOG1025|consen 823 DLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYD 902 (1177)
T ss_pred hhhhhheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccC
Confidence 9999999999999999999999999876554322 23455578899998888999999999999999999998 788876
Q ss_pred CCcchH----------------------HHHhhcccCCCCCCCCcccc
Q 046589 703 PKFEDK----------------------DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 703 ~~~~~~----------------------~l~~~c~~~~p~~Rp~~~~v 728 (729)
.--.++ .++.+||..++..||+|+++
T Consensus 903 gi~~~eI~dlle~geRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel 950 (1177)
T KOG1025|consen 903 GIPAEEIPDLLEKGERLSQPPICTIDVYMVMVKCWMIDADSRPTFKEL 950 (1177)
T ss_pred CCCHHHhhHHHhccccCCCCCCccHHHHHHHHHHhccCcccCccHHHH
Confidence 311111 68999999999999999875
|
|
| >cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-16 Score=164.99 Aligned_cols=103 Identities=27% Similarity=0.415 Sum_probs=82.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC----CCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR----KANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~----~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|++|+||+++.++.++++|||++....... ......++..|+|||..... .++.++|||||||++|||++|+.|
T Consensus 140 dl~p~nill~~~~~~kL~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p 217 (296)
T cd06618 140 DVKPSNILLDASGNVKLCDFGISGRLVDSK--AKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFP 217 (296)
T ss_pred CCcHHHEEEcCCCCEEECccccchhccCCC--cccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999987654211 12233466789999987644 378899999999999999999999
Q ss_pred CCCC-------------------cc----h--HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPK-------------------FE----D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~-------------------~~----~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+... +. + .+++.+|+..+|++||++++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il 271 (296)
T cd06618 218 YKNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPKYRELL 271 (296)
T ss_pred CCcchhHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 7520 00 0 1789999999999999999874
|
Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it |
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-16 Score=164.61 Aligned_cols=109 Identities=22% Similarity=0.400 Sum_probs=85.1
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~ 698 (729)
.||+|+||+||++++++.+|++|||+++......... .....++..|+|||...+..++.++|||||||++|||+| |+
T Consensus 148 ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~ 227 (290)
T cd05045 148 LVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGG 227 (290)
T ss_pred eehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCC
Confidence 4566999999999999999999999998654222111 122344568999998877788999999999999999999 88
Q ss_pred CCCCCCcc--------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGPKFE--------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~~~~--------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+...-. .+ +++..|++.+|++||++++++
T Consensus 228 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~ 280 (290)
T cd05045 228 NPYPGIAPERLFNLLKTGYRMERPENCSEEMYNLMLTCWKQEPDKRPTFADIS 280 (290)
T ss_pred CCCCCCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHH
Confidence 77652100 01 799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-16 Score=164.22 Aligned_cols=104 Identities=23% Similarity=0.453 Sum_probs=82.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-----CCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-----ARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-----~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|++++||+++.++.++++|||++....... .......++..|+|||... ...++.++|||||||++|||+||+.
T Consensus 146 dl~~~nili~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~ 224 (282)
T cd06636 146 DIKGQNVLLTENAEVKLVDFGVSAQLDRTV-GRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAP 224 (282)
T ss_pred CCCHHHEEECCCCCEEEeeCcchhhhhccc-cCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCC
Confidence 999999999999999999999987643211 1122345778899999764 3457889999999999999999999
Q ss_pred CCCCC---------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 700 PTGPK---------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~~---------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+... +... +++.+||+.+|++|||++|++
T Consensus 225 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell 277 (282)
T cd06636 225 PLCDMHPMRALFLIPRNPPPKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLL 277 (282)
T ss_pred CccccCHHhhhhhHhhCCCCCCcccccCHHHHHHHHHHhCCChhhCcCHHHHh
Confidence 97520 0111 899999999999999999874
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.3e-17 Score=154.44 Aligned_cols=103 Identities=22% Similarity=0.400 Sum_probs=86.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC------CCCCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR------ARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~------~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||+|||+|++...+|+|||+|....+. ......+||+||.|||... .-.|+..+|.||.|||||.|+.|.
T Consensus 148 DLKpENILlddn~~i~isDFGFa~~l~~G--ekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGc 225 (411)
T KOG0599|consen 148 DLKPENILLDDNMNIKISDFGFACQLEPG--EKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGC 225 (411)
T ss_pred ccChhheeeccccceEEeccceeeccCCc--hhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCC
Confidence 99999999999999999999999887653 2345679999999999543 235788899999999999999999
Q ss_pred CCCC--------------------CCcch-----HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTG--------------------PKFED-----KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~--------------------~~~~~-----~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.||+ ++|.. ++++.+|++-+|.+|-|.+|++
T Consensus 226 pPFwHRkQmlMLR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~L 281 (411)
T KOG0599|consen 226 PPFWHRKQMLMLRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEAL 281 (411)
T ss_pred CchhHHHHHHHHHHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHh
Confidence 9987 23432 2899999999999999998864
|
|
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-16 Score=165.21 Aligned_cols=105 Identities=23% Similarity=0.398 Sum_probs=83.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.++++|||+++......... .....++..|+|||......++.++||||+||++||++| |+.|+.
T Consensus 166 dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~ 245 (302)
T cd05055 166 DLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYP 245 (302)
T ss_pred hhccceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcC
Confidence 999999999999999999999998654321111 112344567999998887888999999999999999998 888864
Q ss_pred CCc--------------------c-hH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PKF--------------------E-DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~--------------------~-~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... . +. +++.+|+..+|++|||+.+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell 295 (302)
T cd05055 246 GMPVDSKFYKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIV 295 (302)
T ss_pred CCCchHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHH
Confidence 210 0 01 799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-16 Score=163.87 Aligned_cols=104 Identities=19% Similarity=0.326 Sum_probs=81.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC-----CCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR-----KANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~-----~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+||+||+++.++.++++|||+++....... ......++..|+|||..... .++.++|||||||++|||++|+.
T Consensus 153 dlkp~nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~ 231 (291)
T cd06639 153 DVKGNNILLTTEGGVKLVDFGVSAQLTSTRL-RRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDP 231 (291)
T ss_pred CCCHHHEEEcCCCCEEEeecccchhcccccc-cccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCC
Confidence 9999999999999999999999886543211 12234567889999976432 36789999999999999999999
Q ss_pred CCCC-Ccc-----------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGP-KFE-----------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~-~~~-----------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.. ... -.+++.+|++.+|++||++++++
T Consensus 232 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il 285 (291)
T cd06639 232 PLFDMHPVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLL 285 (291)
T ss_pred CCCCCcHHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHhhcChhhCcCHHHHh
Confidence 9752 000 01689999999999999999874
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-16 Score=162.84 Aligned_cols=104 Identities=19% Similarity=0.396 Sum_probs=82.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-----CCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-----ARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-----~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+||+||+++.++.++++|||+++...... .......++..|+|||+.. ...++.++||||+||++|||+||+.
T Consensus 149 dlkp~nili~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~ 227 (286)
T cd06638 149 DVKGNNILLTTEGGVKLVDFGVSAQLTSTR-LRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDP 227 (286)
T ss_pred CCCHHhEEECCCCCEEEccCCceeecccCC-CccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCC
Confidence 999999999999999999999987654321 1122346788999999764 2457889999999999999999999
Q ss_pred CCCC-C---------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGP-K---------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~-~---------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.. . +.. .+++.+|++.+|++|||++||+
T Consensus 228 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell 281 (286)
T cd06638 228 PLADLHPMRALFKIPRNPPPTLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDLL 281 (286)
T ss_pred CCCCCchhHHHhhccccCCCcccCCCCcCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 8651 0 001 1789999999999999999975
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-16 Score=160.99 Aligned_cols=104 Identities=22% Similarity=0.356 Sum_probs=78.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCC-------CCCCchhhHHHHHHHHHHHHh
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRA-------RKANERDNIYRFGVVLLELVI 696 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~-------~~~~~~~Dv~s~G~vl~el~t 696 (729)
|+||.||+++.++.++++|||+++......... .....++..|+|||+... ..++.++|||||||++||+++
T Consensus 125 dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~ 204 (269)
T cd05087 125 DLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFE 204 (269)
T ss_pred ccCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHh
Confidence 999999999999999999999987643221111 112345678999997643 235789999999999999997
Q ss_pred -CCCCCCCCc----------------c---------h--HHHHhhcccCCCCCCCCccccC
Q 046589 697 -RKQPTGPKF----------------E---------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 697 -g~~p~~~~~----------------~---------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.|+...- . + .+++.+|| .+|++|||++||+
T Consensus 205 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~ 264 (269)
T cd05087 205 LGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVH 264 (269)
T ss_pred CCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHHHHh-cCcccCCCHHHHH
Confidence 988864200 0 0 06889999 5799999999974
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-16 Score=162.79 Aligned_cols=105 Identities=26% Similarity=0.431 Sum_probs=81.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce--ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS--TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~--~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.++++|||+++.......... ....++..|+|||+.....++.++|||||||++|||++|..|+.
T Consensus 133 dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~ 212 (284)
T cd05081 133 DLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSC 212 (284)
T ss_pred cCCHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCC
Confidence 9999999999999999999999987643221111 11223446999998887888999999999999999999876532
Q ss_pred C---Cc---------------------------------c--hHHHHhhcccCCCCCCCCccccC
Q 046589 703 P---KF---------------------------------E--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~---~~---------------------------------~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .+ . -.+++.+||+.+|++|||+++|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~ 277 (284)
T cd05081 213 SPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELA 277 (284)
T ss_pred CcchhhhhhcccccccccchHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHH
Confidence 1 00 0 11799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th |
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-16 Score=173.62 Aligned_cols=78 Identities=26% Similarity=0.394 Sum_probs=63.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCC----------------------------------------------Ccce
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCK----------------------------------------------SHIS 658 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~----------------------------------------------~~~~ 658 (729)
|+||+||+++.++.+|++|||+++...... ....
T Consensus 126 DlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (382)
T cd05625 126 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLA 205 (382)
T ss_pred CCCHHHEEECCCCCEEEeECCCCccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccc
Confidence 999999999999999999999975321000 0000
Q ss_pred ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 659 TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 659 ~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
....||..|+|||......++.++||||+||++|||+||+.|+.
T Consensus 206 ~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~ 249 (382)
T cd05625 206 HSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFL 249 (382)
T ss_pred cccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCC
Confidence 12357889999998888889999999999999999999999986
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-16 Score=165.15 Aligned_cols=108 Identities=23% Similarity=0.391 Sum_probs=84.1
Q ss_pred eeccccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCC
Q 046589 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQ 699 (729)
Q Consensus 622 vk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~ 699 (729)
||+|+||+||+++.++.+|++|||+++......... .....++..|+|||......++.++|||||||++||++| |..
T Consensus 159 vH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~ 238 (304)
T cd05101 159 IHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGS 238 (304)
T ss_pred eecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCC
Confidence 445999999999999999999999998764322111 112344567999998877888999999999999999998 666
Q ss_pred CCCC-Ccc---------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGP-KFE---------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~-~~~---------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.. .+. -.+++.+||..+|++||+|.+|+
T Consensus 239 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l 290 (304)
T cd05101 239 PYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLV 290 (304)
T ss_pred CcccCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHH
Confidence 6542 111 01799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-16 Score=161.12 Aligned_cols=104 Identities=27% Similarity=0.474 Sum_probs=84.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.++++|||++........ ......++..|+|||+..+...+.++|||||||+++|++||+.|+...
T Consensus 126 ~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~ 204 (256)
T cd08218 126 DIKSQNIFLTKDGTIKLGDFGIARVLNSTVE-LARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAG 204 (256)
T ss_pred CCCHHHEEEcCCCCEEEeeccceeecCcchh-hhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCC
Confidence 9999999999999999999999876543111 112235677899999888788889999999999999999999997521
Q ss_pred --------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 705 --------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 --------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+.. .+++.+|+..+|++||+|++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl 251 (256)
T cd08218 205 NMKNLVLKIIRGSYPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSIL 251 (256)
T ss_pred CHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHhhCChhhCcCHHHHh
Confidence 001 1799999999999999999985
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-16 Score=161.60 Aligned_cols=105 Identities=25% Similarity=0.455 Sum_probs=84.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc---ceecccccccccCccccCCC-CCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH---ISTDVASAISYVPPEYGRAR-KANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~---~~~~~~~~~~y~ape~~~~~-~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|++|+||++++++.++++|||++......... ......++..|+|||+.... .++.++|||||||++|||++|+.|
T Consensus 127 ~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p 206 (267)
T cd06610 127 DIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAP 206 (267)
T ss_pred CCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCC
Confidence 99999999999999999999998776532221 11233567889999987665 788999999999999999999999
Q ss_pred CCC-C-----------------c-c------h--HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGP-K-----------------F-E------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~-~-----------------~-~------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+.. . . . + .+++..|+..+|++||++++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll 262 (267)
T cd06610 207 YSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELL 262 (267)
T ss_pred ccccChhhhHHHHhcCCCCCcCCccccccccHHHHHHHHHHcCCChhhCcCHHHHh
Confidence 752 0 0 0 1 1799999999999999999874
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-16 Score=163.29 Aligned_cols=105 Identities=27% Similarity=0.464 Sum_probs=83.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++....... .......++..|+|||......++.++|||||||++||++| |+.|+.
T Consensus 144 di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~ 223 (277)
T cd05032 144 DLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQ 223 (277)
T ss_pred ccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCc
Confidence 9999999999999999999999876543221 11122345678999998877788999999999999999998 887764
Q ss_pred C-C-------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 703 P-K-------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~-------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. . +... +++.+|++.+|++|||+.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~ 272 (277)
T cd05032 224 GLSNEEVLKFVIDGGHLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIV 272 (277)
T ss_pred cCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHH
Confidence 2 1 0011 899999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-16 Score=160.96 Aligned_cols=101 Identities=28% Similarity=0.487 Sum_probs=81.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.++++|||+++..... ......+..|+|||+.....++.++|||||||++|||++ |+.|+..
T Consensus 125 dl~p~nili~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~ 200 (254)
T cd05083 125 DLAARNILVSEDGVAKVSDFGLARVGSMG----VDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPK 200 (254)
T ss_pred ccCcceEEEcCCCcEEECCCccceecccc----CCCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence 99999999999999999999998764321 112233567999998877888999999999999999998 8888652
Q ss_pred -Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 -KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... . .+++.+|++.+|+.||++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~ 248 (254)
T cd05083 201 MSLKEVKECVEKGYRMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLR 248 (254)
T ss_pred CCHHHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 110 0 1799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki |
| >cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-16 Score=169.34 Aligned_cols=78 Identities=23% Similarity=0.347 Sum_probs=64.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-----CCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-----ARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-----~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+||+||+++.++.+|++|||+++..............++..|+|||+.. ...++.++|||||||++|||++|+.
T Consensus 127 Dlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~ 206 (332)
T cd05623 127 DIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGET 206 (332)
T ss_pred CCCHHHEEECCCCCEEEeecchheecccCCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCC
Confidence 99999999999999999999998765432222223356889999999764 3457889999999999999999999
Q ss_pred CCC
Q 046589 700 PTG 702 (729)
Q Consensus 700 p~~ 702 (729)
|+.
T Consensus 207 Pf~ 209 (332)
T cd05623 207 PFY 209 (332)
T ss_pred CCC
Confidence 986
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw |
| >cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-16 Score=162.29 Aligned_cols=104 Identities=19% Similarity=0.249 Sum_probs=81.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.++++|||+++...... .......++..|+|||.... ..++.++||||+||++|||+||+.|++.
T Consensus 128 dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~ 206 (291)
T cd07870 128 DLKPQNLLISYLGELKLADFGLARAKSIPS-QTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPG 206 (291)
T ss_pred CCChHHEEEcCCCcEEEeccccccccCCCC-CCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999987643211 11223345788999998754 3468899999999999999999998741
Q ss_pred C----------------------------------c--------------------chHHHHhhcccCCCCCCCCccccC
Q 046589 704 K----------------------------------F--------------------EDKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~----------------------------------~--------------------~~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. + ...+++.+|+..+|++|||+++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l 286 (291)
T cd07870 207 VSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDAL 286 (291)
T ss_pred chhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHh
Confidence 0 0 001699999999999999999874
|
Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess |
| >cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-16 Score=159.60 Aligned_cols=103 Identities=24% Similarity=0.442 Sum_probs=83.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCC-CCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARK-ANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~-~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++++||+++.++.+|++|||++....... ......++..|+|||...... ++.++|+|||||++||+++|+.|+..
T Consensus 127 dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~--~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~ 204 (258)
T cd06632 127 DIKGANILVDTNGVVKLADFGMAKQVVEFS--FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQ 204 (258)
T ss_pred CCCHHHEEECCCCCEEEccCccceeccccc--cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCccc
Confidence 999999999999999999999887654321 122345678899999876555 88999999999999999999999752
Q ss_pred Ccc---------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KFE---------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~---------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.-. . .+++.+|++.+|+.||++++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l 253 (258)
T cd06632 205 LEGVAAVFKIGRSKELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELL 253 (258)
T ss_pred CcHHHHHHHHHhcccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHh
Confidence 100 0 1689999999999999999874
|
Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-16 Score=163.16 Aligned_cols=105 Identities=27% Similarity=0.435 Sum_probs=82.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.++++|||+++......... .....++..|+|||......++.++|||||||++||+++ |..|+.
T Consensus 144 dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~ 223 (288)
T cd05061 144 DLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQ 223 (288)
T ss_pred CCChheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCC
Confidence 899999999999999999999988654322111 112234567999999888888999999999999999998 676764
Q ss_pred C-Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... . .+++.+|++.+|++|||+.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll 272 (288)
T cd05061 224 GLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIV 272 (288)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 2 100 0 1899999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-16 Score=159.19 Aligned_cols=101 Identities=27% Similarity=0.512 Sum_probs=81.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||.||+++.++.++++|||.++...... .....+..|+|||+.....++.++|||||||++||+++ |+.|+..
T Consensus 127 di~p~Nili~~~~~~~l~d~g~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~ 202 (256)
T cd05039 127 DLAARNVLVSEDLVAKVSDFGLAKEASQGQ----DSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR 202 (256)
T ss_pred hcccceEEEeCCCCEEEccccccccccccc----ccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999999999999998753211 12234567999998887888999999999999999997 8887642
Q ss_pred -Ccc-------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 704 -KFE-------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~~-------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... +. +++.+|+..+|++|||+++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~ 250 (256)
T cd05039 203 IPLKDVVPHVEKGYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLR 250 (256)
T ss_pred CCHHHHHHHHhcCCCCCCccCCCHHHHHHHHHHhccChhhCcCHHHHH
Confidence 110 11 799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk |
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-16 Score=163.49 Aligned_cols=105 Identities=20% Similarity=0.362 Sum_probs=81.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh--CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI--RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t--g~~p~ 701 (729)
|+||+||+++.++.+|++|||+++......... .....++..|+|||......++.++|||||||++|||+| +..|+
T Consensus 154 dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~ 233 (295)
T cd05097 154 DLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPY 233 (295)
T ss_pred ccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999997654322111 112334568999998877888999999999999999998 44555
Q ss_pred CC-C--------------------cc------h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP-K--------------------FE------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~-~--------------------~~------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . +. . .+++.+|++.+|++||+|++|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~ 290 (295)
T cd05097 234 SLLSDEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIH 290 (295)
T ss_pred cccChHHHHHHHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHH
Confidence 31 0 00 0 1799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=99.64 E-value=5e-16 Score=162.89 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=81.3
Q ss_pred cccccceEecC-CccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNE-DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|++|+||+++. ++.+|++|||+++..... ........++.+|+|||+... ..++.++|||||||++|||+||+.|+.
T Consensus 135 dl~~~nil~~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~ 213 (295)
T cd07837 135 DLKPQNLLVDKQKGLLKIADLGLGRAFSIP-VKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFP 213 (295)
T ss_pred CCChHHEEEecCCCeEEEeecccceecCCC-ccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999998 889999999998765321 111223345778999997654 457899999999999999999998863
Q ss_pred CC--------------------c---------------c------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PK--------------------F---------------E------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~--------------------~---------------~------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. | . + .+++.+|+..+|++||+++|++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil 289 (295)
T cd07837 214 GDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAAL 289 (295)
T ss_pred CCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHh
Confidence 10 0 0 0 1689999999999999999874
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-16 Score=163.89 Aligned_cols=102 Identities=28% Similarity=0.527 Sum_probs=83.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+||.||+++.++.++++|||+++...... .....++..|+|||...+..++.++|||||||++||++||+.|+..
T Consensus 125 dl~p~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~ 201 (308)
T cd06615 125 DVKPSNILVNSRGEIKLCDFGVSGQLIDSM---ANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPP 201 (308)
T ss_pred CCChHHEEEecCCcEEEccCCCcccccccc---cccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCc
Confidence 999999999999999999999987653211 1234567899999988777788999999999999999999988641
Q ss_pred ----------------C----------------------------------------cc--hHHHHhhcccCCCCCCCCc
Q 046589 704 ----------------K----------------------------------------FE--DKDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 704 ----------------~----------------------------------------~~--~~~l~~~c~~~~p~~Rp~~ 725 (729)
. +. -.+++.+|+..+|++|||+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~ 281 (308)
T cd06615 202 DAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADL 281 (308)
T ss_pred chhhHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCH
Confidence 0 00 1178999999999999999
Q ss_pred cccC
Q 046589 726 LRVQ 729 (729)
Q Consensus 726 ~~v~ 729 (729)
++|+
T Consensus 282 ~~ll 285 (308)
T cd06615 282 KELT 285 (308)
T ss_pred HHHh
Confidence 9874
|
Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down |
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-16 Score=158.83 Aligned_cols=103 Identities=24% Similarity=0.486 Sum_probs=83.0
Q ss_pred cccccceEecCC-ccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNED-FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~-~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||+++.+ ..++++|||+++...... ......++..|+|||......++.++|||||||++||+++|+.|+..
T Consensus 126 dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~ 203 (256)
T cd08220 126 DLKTQNILLDKHKMVVKIGDFGISKILSSKS--KAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEA 203 (256)
T ss_pred CCCHHHEEEcCCCCEEEEccCCCceecCCCc--cccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCccc
Confidence 999999999854 578999999988754321 11234567889999988877788999999999999999999999763
Q ss_pred Cc--------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KF--------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.- .. .+++..||..+|++|||+++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll 251 (256)
T cd08220 204 ANLPALVLKIMSGTFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIM 251 (256)
T ss_pred CchHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 10 01 1799999999999999999874
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-16 Score=158.91 Aligned_cols=109 Identities=21% Similarity=0.452 Sum_probs=88.5
Q ss_pred eeeeccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 620 VAVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 620 ~avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
-.+|+|++|+||+++.++.+|++|||+++....... ......++..|+|||......++.++|||||||+++++++|+.
T Consensus 130 ~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~ 208 (265)
T cd08217 130 TVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSS-FAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSP 208 (265)
T ss_pred cceecCCCHHHEEEecCCCEEEecccccccccCCcc-cccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCC
Confidence 355669999999999999999999999887653221 1223457788999999888888999999999999999999999
Q ss_pred CCCCC--------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 700 PTGPK--------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~~--------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+... +..+ +++.+|++.+|++||++++|+
T Consensus 209 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il 260 (265)
T cd08217 209 PFTARNQLQLASKIKEGKFRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELL 260 (265)
T ss_pred cccCcCHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 97631 0011 799999999999999999875
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.4e-16 Score=158.65 Aligned_cols=105 Identities=28% Similarity=0.480 Sum_probs=84.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCccee---cccccccccCccccCCCC---CCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST---DVASAISYVPPEYGRARK---ANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~---~~~~~~~y~ape~~~~~~---~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+++.||+++.++.+|++|||.+............ ...++..|+|||+..... .+.++|||||||+++|+++|+
T Consensus 124 dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~ 203 (264)
T cd06626 124 DIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGK 203 (264)
T ss_pred CCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCC
Confidence 99999999999999999999998876532222111 245677899999877655 789999999999999999999
Q ss_pred CCCCCC---cc-------------------h---HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGPK---FE-------------------D---KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~~---~~-------------------~---~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+... |. . .+++..|++.+|++||++++++
T Consensus 204 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i~ 259 (264)
T cd06626 204 RPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPKKRPTASELL 259 (264)
T ss_pred CCccCCcchHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 997521 10 0 1799999999999999999874
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4 |
| >cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-16 Score=166.83 Aligned_cols=105 Identities=27% Similarity=0.386 Sum_probs=82.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc--ceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++.++++|||+++........ ......++..|+|||.... ..++.++||||+||++|||+||+.|+
T Consensus 131 dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f 210 (336)
T cd07849 131 DLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLF 210 (336)
T ss_pred CCCHHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999998875432111 1123467788999997543 56788999999999999999999887
Q ss_pred CCC-------------------------------------------cc---------hHHHHhhcccCCCCCCCCccccC
Q 046589 702 GPK-------------------------------------------FE---------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~-------------------------------------------~~---------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... |. -.+++.+|+..+|++|||+.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l 290 (336)
T cd07849 211 PGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEAL 290 (336)
T ss_pred CCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHh
Confidence 420 00 01689999999999999999874
|
Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase |
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-16 Score=161.64 Aligned_cols=102 Identities=27% Similarity=0.505 Sum_probs=83.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|.||+++.++.++++|||.+........ ....++..|+|||+..+..++.++|||||||++||+++|+.|+...
T Consensus 126 dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~---~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~ 202 (265)
T cd06605 126 DVKPSNILVNSRGQIKLCDFGVSGQLVNSLA---KTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPE 202 (265)
T ss_pred CCCHHHEEECCCCCEEEeecccchhhHHHHh---hcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence 9999999999999999999998876532111 1245677899999988888899999999999999999999997521
Q ss_pred --------------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 705 --------------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 --------------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+.. .+++..|+..+|++|||+++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll 255 (265)
T cd06605 203 NDPPDGIFELLQYIVNEPPPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKELL 255 (265)
T ss_pred ccccccHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHcCCCchhCcCHHHHh
Confidence 000 1689999999999999999874
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
| >cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-16 Score=161.25 Aligned_cols=105 Identities=27% Similarity=0.475 Sum_probs=81.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-cee-ccc--ccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-IST-DVA--SAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~-~~~--~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~ 699 (729)
|+||+||+++.++.++++|||+++........ ... ... .+..|+|||+.....++.++|||||||++||+++ |+.
T Consensus 131 dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~ 210 (269)
T cd05065 131 DLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGER 210 (269)
T ss_pred ccChheEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCC
Confidence 99999999999999999999998765432111 111 111 1357999999888888999999999999999887 988
Q ss_pred CCCCC--------------cc--------hHHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGPK--------------FE--------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~~--------------~~--------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+... +. -.+++..||+.+|++||+|++|+
T Consensus 211 p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~ 262 (269)
T cd05065 211 PYWDMSNQDVINAIEQDYRLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIV 262 (269)
T ss_pred CCCCCCHHHHHHHHHcCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 87520 00 11789999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.9e-16 Score=159.48 Aligned_cols=100 Identities=20% Similarity=0.345 Sum_probs=77.8
Q ss_pred cccccceEecCCcc-------EEEeecCCccccCCCCCcceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHH-
Q 046589 625 DIKASNILLNEDFD-------AKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELV- 695 (729)
Q Consensus 625 dlk~~nill~~~~~-------~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~- 695 (729)
|+||.||+++.++. ++++|||++..... .....++..|+|||... ...++.++|||||||++|||+
T Consensus 130 dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~ 204 (262)
T cd05077 130 NVCTKNILLAREGIDGECGPFIKLSDPGIPITVLS-----RQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICY 204 (262)
T ss_pred CCCcccEEEecCCccCCCCceeEeCCCCCCccccC-----cccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHh
Confidence 99999999986653 89999998876432 12235667899999775 466888999999999999998
Q ss_pred hCCCCCCCCc------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 696 IRKQPTGPKF------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 696 tg~~p~~~~~------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+|+.|+.... .+ .+++.+||+.+|++||++.+++
T Consensus 205 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il 258 (262)
T cd05077 205 NGEIPLKDKTLAEKERFYEGQCMLVTPSCKELADLMTHCMNYDPNQRPFFRAIM 258 (262)
T ss_pred CCCCCCCCcchhHHHHHHhcCccCCCCChHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 5777754210 01 1789999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-16 Score=162.80 Aligned_cols=107 Identities=26% Similarity=0.428 Sum_probs=82.7
Q ss_pred eccccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCC
Q 046589 623 KKDIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQP 700 (729)
Q Consensus 623 k~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p 700 (729)
|+|+||+||+++.++.++++|||+++....... ........+..|+|||......++.++|||||||++|||++ |..|
T Consensus 153 H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p 232 (288)
T cd05050 153 HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQP 232 (288)
T ss_pred cccccHhheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCC
Confidence 338999999999999999999999876432211 11112234567999998877888999999999999999998 7777
Q ss_pred CCC-C---------------cc----hH--HHHhhcccCCCCCCCCccccC
Q 046589 701 TGP-K---------------FE----DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~-~---------------~~----~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+.. . +. .. +++.+|++.+|++|||++|++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~ 283 (288)
T cd05050 233 YYGMAHEEVIYYVRDGNVLSCPDNCPLELYNLMRLCWSKLPSDRPSFASIN 283 (288)
T ss_pred CCCCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHH
Confidence 641 0 00 11 899999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-16 Score=161.68 Aligned_cols=104 Identities=19% Similarity=0.297 Sum_probs=84.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.++++|||++....... .......++..|+|||...+..++.++|||||||++||+++|+.|+...
T Consensus 140 dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~ 218 (285)
T cd06648 140 DIKSDSILLTSDGRVKLSDFGFCAQVSKEV-PRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNE 218 (285)
T ss_pred CCChhhEEEcCCCcEEEcccccchhhccCC-cccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCC
Confidence 999999999999999999999887654221 1122345678999999887778899999999999999999999986420
Q ss_pred ----------------c--c----hH--HHHhhcccCCCCCCCCccccC
Q 046589 705 ----------------F--E----DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ----------------~--~----~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. . .. +++.+|+..+|++||++++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il 267 (285)
T cd06648 219 PPLQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELL 267 (285)
T ss_pred CHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhhCcCHHHHc
Confidence 0 0 11 899999999999999999874
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2 | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-16 Score=159.70 Aligned_cols=104 Identities=19% Similarity=0.278 Sum_probs=81.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC--cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS--HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~--~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|++|+||+++.++.++++|||+++....... .......++..|+|||......++.++|||||||++||+++|+.|+.
T Consensus 131 dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~ 210 (265)
T cd06652 131 DIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWA 210 (265)
T ss_pred CCCHHHEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCC
Confidence 9999999999999999999999876432111 11123456788999998877778899999999999999999999975
Q ss_pred CC-----------------cch------HHHHhhcccCCCCCCCCccccC
Q 046589 703 PK-----------------FED------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~-----------------~~~------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. ... .+++.+|+. +|++||++++|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il 259 (265)
T cd06652 211 EFEAMAAIFKIATQPTNPVLPPHVSDHCRDFLKRIFV-EAKLRPSADELL 259 (265)
T ss_pred ccchHHHHHHHhcCCCCCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHh
Confidence 20 000 167778884 899999999874
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re |
| >cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-16 Score=162.40 Aligned_cols=104 Identities=19% Similarity=0.301 Sum_probs=81.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.++++|||+++..... ........++..|+|||...+ ..++.++||||+||++|||++|+.|+..
T Consensus 128 dl~p~nil~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~ 206 (291)
T cd07844 128 DLKPQNLLISERGELKLADFGLARAKSVP-SKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPG 206 (291)
T ss_pred cCCHHHEEEcCCCCEEECccccccccCCC-CccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999998754321 111222345678999997654 4578899999999999999999988742
Q ss_pred Cc--------------------------------------------------c--h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KF--------------------------------------------------E--D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--------------------------------------------------~--~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . . .+++.+|+..+|++|||+++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l 286 (291)
T cd07844 207 STDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAM 286 (291)
T ss_pred CccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHh
Confidence 10 0 0 1788999999999999999874
|
Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the |
| >cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-16 Score=166.93 Aligned_cols=78 Identities=22% Similarity=0.339 Sum_probs=63.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-----CCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-----ARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-----~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+||.||+++.++.+|++|||+++..............++.+|+|||... ...++.++||||+||++|||++|+.
T Consensus 127 dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~ 206 (331)
T cd05597 127 DIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGET 206 (331)
T ss_pred CCCHHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCC
Confidence 99999999999999999999998765432222222346788999999764 2456889999999999999999999
Q ss_pred CCC
Q 046589 700 PTG 702 (729)
Q Consensus 700 p~~ 702 (729)
|+.
T Consensus 207 Pf~ 209 (331)
T cd05597 207 PFY 209 (331)
T ss_pred CCC
Confidence 975
|
Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, |
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-16 Score=173.55 Aligned_cols=103 Identities=22% Similarity=0.357 Sum_probs=78.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCC------------------------------------------Ccceeccc
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCK------------------------------------------SHISTDVA 662 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~------------------------------------------~~~~~~~~ 662 (729)
|+||+||+++.++.+|++|||+|....... ........
T Consensus 126 Dlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (376)
T cd05598 126 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLV 205 (376)
T ss_pred CCCHHHEEECCCCCEEEEeCCCCccccccccccccccccccccccccccccccccccccccchhhhhhhhcccccccccC
Confidence 999999999999999999999975321000 00011246
Q ss_pred ccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----------cc------------h--HHHHhhcccC
Q 046589 663 SAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK-----------FE------------D--KDIVVGCVSD 717 (729)
Q Consensus 663 ~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~-----------~~------------~--~~l~~~c~~~ 717 (729)
|+.+|+|||......++.++||||+||++|||+||+.|+... |. . .+++.+|+ .
T Consensus 206 gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~l~-~ 284 (376)
T cd05598 206 GTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKVINWETTLHIPSQAKLSREASDLILRLC-C 284 (376)
T ss_pred CCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCHHHHHHHHhccCccccCCCCCCCCHHHHHHHHHHh-c
Confidence 888999999988888899999999999999999999998621 11 0 05666665 5
Q ss_pred CCCCCC---Ccccc
Q 046589 718 NPIAKP---GMLRV 728 (729)
Q Consensus 718 ~p~~Rp---~~~~v 728 (729)
+|.+|+ +++++
T Consensus 285 ~p~~R~~~~t~~el 298 (376)
T cd05598 285 GAEDRLGKNGADEI 298 (376)
T ss_pred CHhhcCCCCCHHHH
Confidence 999999 77765
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-16 Score=169.01 Aligned_cols=78 Identities=24% Similarity=0.361 Sum_probs=64.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-----CCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-----RKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-----~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+||+||+++.++.+|++|||+++..............++..|+|||.... ..++.++|||||||++|||+||+.
T Consensus 127 Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~ 206 (331)
T cd05624 127 DIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGET 206 (331)
T ss_pred cCchHHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCC
Confidence 999999999999999999999998765322222223468899999997654 457889999999999999999999
Q ss_pred CCC
Q 046589 700 PTG 702 (729)
Q Consensus 700 p~~ 702 (729)
|+.
T Consensus 207 Pf~ 209 (331)
T cd05624 207 PFY 209 (331)
T ss_pred Ccc
Confidence 985
|
Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. |
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.6e-16 Score=158.83 Aligned_cols=104 Identities=28% Similarity=0.446 Sum_probs=83.2
Q ss_pred cccccceEecCCc-cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDF-DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~-~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|.||++++++ .++++|||.+....... .......++..|+|||......++.++|||||||+++|+++|+.|+..
T Consensus 126 dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~ 204 (257)
T cd08225 126 DIKSQNIFLSKNGMVAKLGDFGIARQLNDSM-ELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEG 204 (257)
T ss_pred cCCHHHEEEcCCCCeEEecccccchhccCCc-ccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999775 57999999887654321 112234567889999988777889999999999999999999999763
Q ss_pred Ccc----------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KFE----------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~----------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... ..+++.+|+..+|++|||+++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll 252 (257)
T cd08225 205 NNLHQLVLKICQGYFAPISPNFSRDLRSLISQLFKVSPRDRPSITSIL 252 (257)
T ss_pred ccHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHh
Confidence 110 11789999999999999999874
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-16 Score=164.83 Aligned_cols=106 Identities=25% Similarity=0.440 Sum_probs=82.1
Q ss_pred eeccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCC
Q 046589 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQP 700 (729)
Q Consensus 622 vk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p 700 (729)
+|+|+||+||+++.++.+|++|||+++...... .......+..|+|||+.....++.++|||||||++||++| |..|
T Consensus 146 ~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p 223 (303)
T cd05088 146 IHRDLAARNILVGENYVAKIADFGLSRGQEVYV--KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTP 223 (303)
T ss_pred cccccchheEEecCCCcEEeCccccCcccchhh--hcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCC
Confidence 455999999999999999999999986432110 0111223567999998877778899999999999999998 8888
Q ss_pred CCCC--------------cc------hH--HHHhhcccCCCCCCCCccccC
Q 046589 701 TGPK--------------FE------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~--------------~~------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+... +. .. +++.+|++.+|++||++++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il 274 (303)
T cd05088 224 YCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL 274 (303)
T ss_pred cccCChHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 6420 10 11 799999999999999999864
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.7e-16 Score=158.93 Aligned_cols=105 Identities=18% Similarity=0.341 Sum_probs=84.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-----ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-----ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-----~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|++|+||+++.++.++++|||+++........ ......++..|+|||......++.++||||+||++|||+||+.
T Consensus 131 di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~ 210 (267)
T cd06628 131 DIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKH 210 (267)
T ss_pred cCCHHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCC
Confidence 99999999999999999999998876421111 0112346778999998877788899999999999999999999
Q ss_pred CCCCC-----------c---------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGPK-----------F---------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~~-----------~---------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+... . .. .+++.+||+.+|.+||++.+|+
T Consensus 211 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il 262 (267)
T cd06628 211 PFPDCTQLQAIFKIGENASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELL 262 (267)
T ss_pred CCCCccHHHHHHHHhccCCCcCCcccCHHHHHHHHHHccCCchhCcCHHHHh
Confidence 97521 0 00 1789999999999999999874
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-16 Score=151.45 Aligned_cols=78 Identities=32% Similarity=0.421 Sum_probs=65.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC---cceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS---HISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~---~~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+|+.|+|++.++..|++|||+|+.++..+. ...+....|.||.+||..- ...++.+.|||+.||||.||.||.+.
T Consensus 149 DmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspi 228 (376)
T KOG0669|consen 149 DMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPI 228 (376)
T ss_pred cccHhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCcc
Confidence 9999999999999999999999987663322 2345567799999999654 47789999999999999999999877
Q ss_pred CC
Q 046589 701 TG 702 (729)
Q Consensus 701 ~~ 702 (729)
+.
T Consensus 229 mq 230 (376)
T KOG0669|consen 229 MQ 230 (376)
T ss_pred cc
Confidence 65
|
|
| >cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-16 Score=159.86 Aligned_cols=105 Identities=25% Similarity=0.429 Sum_probs=82.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCccee--cccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST--DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~--~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||+||+++.++.++++|||+++........... ....+..|+|||+.....++.++|||||||++||+++ |+.|+
T Consensus 131 dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~ 210 (267)
T cd05066 131 DLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPY 210 (267)
T ss_pred hhchhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999876532221111 1122457999999887888999999999999999887 99887
Q ss_pred CC-Cc---------------------chHHHHhhcccCCCCCCCCccccC
Q 046589 702 GP-KF---------------------EDKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~-~~---------------------~~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .. .-.+++.+|++.+|++||+|++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~ 260 (267)
T cd05066 211 WEMSNQDVIKAIEEGYRLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIV 260 (267)
T ss_pred ccCCHHHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCchhCCCHHHHH
Confidence 42 10 011799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul |
| >cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-16 Score=162.17 Aligned_cols=105 Identities=23% Similarity=0.409 Sum_probs=82.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc--ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.++++|||+++........ ......++..|+|||+.....++.++|||||||++||++|++.|..
T Consensus 134 dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~ 213 (284)
T cd05079 134 DLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSES 213 (284)
T ss_pred ccchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCc
Confidence 99999999999999999999999875432211 1123445667999998877788999999999999999999876532
Q ss_pred C--------------Cc---------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 703 P--------------KF---------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~--------------~~---------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .+ ... +++.+|++.+|++|||+++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il 277 (284)
T cd05079 214 SPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLI 277 (284)
T ss_pred cccchhhhhcccccccccHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHH
Confidence 0 00 001 799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a |
| >cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.6e-16 Score=161.46 Aligned_cols=104 Identities=22% Similarity=0.360 Sum_probs=84.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++++||+++.++.++++|||++........ ......++..|+|||......++.++|||||||++||+++|+.|+...
T Consensus 140 dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~-~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~ 218 (293)
T cd06647 140 DIKSDNILLGMDGSVKLTDFGFCAQITPEQS-KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE 218 (293)
T ss_pred cCCHHHEEEcCCCCEEEccCcceeccccccc-ccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999999998876543221 122345677899999887777889999999999999999999997520
Q ss_pred ----------------cc--------hHHHHhhcccCCCCCCCCccccC
Q 046589 705 ----------------FE--------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ----------------~~--------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+. -.+++..||..+|++||++++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il 267 (293)
T cd06647 219 NPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELL 267 (293)
T ss_pred ChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 00 01789999999999999999874
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi |
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-16 Score=171.91 Aligned_cols=103 Identities=20% Similarity=0.367 Sum_probs=77.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc----------------------------------------------ce
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH----------------------------------------------IS 658 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~----------------------------------------------~~ 658 (729)
|+||+||+++.++.+|++|||+++........ ..
T Consensus 126 Dlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (377)
T cd05629 126 DIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMA 205 (377)
T ss_pred CCCHHHEEECCCCCEEEeecccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccc
Confidence 99999999999999999999998643210000 00
Q ss_pred ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----------cc--------------hHHHHhh
Q 046589 659 TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK-----------FE--------------DKDIVVG 713 (729)
Q Consensus 659 ~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~-----------~~--------------~~~l~~~ 713 (729)
....||.+|+|||......++.++||||+||++|||+||+.||... |. ..+++.+
T Consensus 206 ~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~dli~~ 285 (377)
T cd05629 206 YSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENSHETYRKIINWRETLYFPDDIHLSVEAEDLIRR 285 (377)
T ss_pred cccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCCHHHHHHHHHccCCccCCCCCCCCCHHHHHHHHH
Confidence 0135788999999888788899999999999999999999998521 10 0168888
Q ss_pred cccCCCCCC---CCcccc
Q 046589 714 CVSDNPIAK---PGMLRV 728 (729)
Q Consensus 714 c~~~~p~~R---p~~~~v 728 (729)
|+. +|.+| |+++++
T Consensus 286 lL~-~~~~r~~r~~~~~~ 302 (377)
T cd05629 286 LIT-NAENRLGRGGAHEI 302 (377)
T ss_pred Hhc-CHhhcCCCCCHHHH
Confidence 887 66664 587765
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.4e-16 Score=159.77 Aligned_cols=104 Identities=22% Similarity=0.314 Sum_probs=81.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||+++.++.++++|||+++...... .......++..|+|||+... ..++.++|||||||++|||+||+.|+..
T Consensus 124 dl~p~nil~~~~~~~~l~df~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~ 202 (283)
T cd07835 124 DLKPQNLLIDREGALKLADFGLARAFGVPV-RTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPG 202 (283)
T ss_pred CCCHHHEEEcCCCcEEEeecccccccCCCc-cccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999987653211 11223345778999997654 4568899999999999999999988631
Q ss_pred C------------------------------------cc--------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 K------------------------------------FE--------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~------------------------------------~~--------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. +. ..+++.+|++.+|++|||++|++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il 278 (283)
T cd07835 203 DSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAAL 278 (283)
T ss_pred CCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHh
Confidence 0 00 01689999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc |
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.2e-16 Score=160.15 Aligned_cols=102 Identities=24% Similarity=0.518 Sum_probs=80.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC------CCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR------KANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~------~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||+||+++.++.++++|||++...... ......++.+|+|||..... .++.++|||||||++||++||+
T Consensus 128 dl~p~nil~~~~~~~~l~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~ 204 (286)
T cd06622 128 DVKPTNVLVNGNGQVKLCDFGVSGNLVAS---LAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGR 204 (286)
T ss_pred CCCHHHEEECCCCCEEEeecCCcccccCC---ccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCC
Confidence 99999999999999999999998765321 12233567789999976433 3478999999999999999999
Q ss_pred CCCCC-Ccc----------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGP-KFE----------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~-~~~----------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+.. ... . .+++.+|+..+|+.||++++++
T Consensus 205 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~ 260 (286)
T cd06622 205 YPYPPETYANIFAQLSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLL 260 (286)
T ss_pred CCCCCcchhhHHHHHHHHhhcCCCCCCcccCHHHHHHHHHHcccCcccCCCHHHHh
Confidence 99752 100 0 1789999999999999999864
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-16 Score=160.99 Aligned_cols=105 Identities=22% Similarity=0.375 Sum_probs=89.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCccee-cccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST-DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~-~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+.++|.++|+...+|++|-.++|...+.+.+... ....+..||+||......|+..+|||||||+||||+| |+.|..
T Consensus 421 DiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~Pya 500 (563)
T KOG1024|consen 421 DIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYA 500 (563)
T ss_pred hhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999998877777654 4567789999999999999999999999999999998 666643
Q ss_pred C--Ccch------------------H--HHHhhcccCCCCCCCCccccC
Q 046589 703 P--KFED------------------K--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~--~~~~------------------~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .++. + .++.+||+..|++||+++++|
T Consensus 501 eIDPfEm~~ylkdGyRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv 549 (563)
T KOG1024|consen 501 EIDPFEMEHYLKDGYRLAQPFNCPDELFTVMACCWALLPEERPSFSQLV 549 (563)
T ss_pred ccCHHHHHHHHhccceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHH
Confidence 1 1110 0 799999999999999999875
|
|
| >cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1 | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.7e-16 Score=162.58 Aligned_cols=100 Identities=28% Similarity=0.456 Sum_probs=81.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC---CCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|++|+||+++.++.++++|||++..... .....++..|+|||+.. ...++.++|||||||++|||++|+.|+
T Consensus 150 dL~p~Nil~~~~~~~kl~dfg~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~ 224 (317)
T cd06635 150 DIKAGNILLTEPGQVKLADFGSASIASP-----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 224 (317)
T ss_pred CCCcccEEECCCCCEEEecCCCccccCC-----cccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999998876432 12235677899999763 356788999999999999999999996
Q ss_pred CC-C--------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP-K--------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~-~--------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . |.+ .+++.+|++.+|.+||++++|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il 275 (317)
T cd06635 225 FNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELL 275 (317)
T ss_pred CCccHHHHHHHHHhccCCCCCCccccHHHHHHHHHHccCCcccCcCHHHHH
Confidence 52 0 111 1789999999999999999874
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8e-16 Score=155.35 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=69.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+|-.||++|.++++||+|||+++.-.-. ..++.+.+||+-|+|||....++|...+|+|||||++|||+.|+.||+++
T Consensus 475 DLKLDNvmLd~eGHiKi~DFGmcKEni~~-~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGe 553 (683)
T KOG0696|consen 475 DLKLDNVMLDSEGHIKIADFGMCKENIFD-GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE 553 (683)
T ss_pred eccccceEeccCCceEeeecccccccccC-CcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCC
Confidence 99999999999999999999999864322 22334678999999999998899999999999999999999999999863
|
|
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.7e-16 Score=159.47 Aligned_cols=104 Identities=21% Similarity=0.436 Sum_probs=83.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||+++.++.++++|||++....... .......++..|+|||.... ..++.++|||||||++|||++|+.|+..
T Consensus 126 dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~ 204 (277)
T cd06917 126 DIKAANILVTNTGNVKLCDFGVAALLNQNS-SKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSD 204 (277)
T ss_pred CcCHHHEEEcCCCCEEEccCCceeecCCCc-cccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999988765322 11223457788999997754 4468899999999999999999999752
Q ss_pred C---------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 704 K---------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~---------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. +..+ +++.+|+..+|++||++.+++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il 253 (277)
T cd06917 205 VDAFRAMMLIPKSKPPRLEDNGYSKLLREFVAACLDEEPKERLSAEELL 253 (277)
T ss_pred CChhhhhhccccCCCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHHHh
Confidence 0 0011 789999999999999999874
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-16 Score=167.16 Aligned_cols=103 Identities=22% Similarity=0.390 Sum_probs=88.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+|+|+|..+..||+|||||.+..++ ....+.+|++-|.|||...+.+| ..++||||.|||++.|+||+-||+.
T Consensus 137 DLKpENlLLd~~~nIKIADFGMAsLe~~g--klLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdD 214 (786)
T KOG0588|consen 137 DLKPENLLLDVKNNIKIADFGMASLEVPG--KLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDD 214 (786)
T ss_pred cCCchhhhhhcccCEeeeccceeecccCC--ccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCC
Confidence 99999999999988999999999986642 23456688999999999888777 6889999999999999999999982
Q ss_pred C---------------cc------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 K---------------FE------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~---------------~~------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+ |. ..+++.+++.-||+.|-|++||.
T Consensus 215 dNir~LLlKV~~G~f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~ 261 (786)
T KOG0588|consen 215 DNIRVLLLKVQRGVFEMPSNISSEAQDLLRRMLDVDPSTRITTEEIL 261 (786)
T ss_pred ccHHHHHHHHHcCcccCCCcCCHHHHHHHHHHhccCccccccHHHHh
Confidence 1 11 11899999999999999999974
|
|
| >cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.9e-16 Score=165.07 Aligned_cols=101 Identities=25% Similarity=0.282 Sum_probs=82.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.++++|||+++.... ......++..|+|||.... ..++.++|||||||++|||++|+.|+..
T Consensus 142 dlkp~NIll~~~~~~kL~dfg~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~ 217 (342)
T cd07879 142 DLKPGNLAVNEDCELKILDFGLARHADA----EMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKG 217 (342)
T ss_pred CCCHHHEEECCCCCEEEeeCCCCcCCCC----CCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999876432 1123455778999998755 4678899999999999999999998753
Q ss_pred Cc--------------------------------------------------c--hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KF--------------------------------------------------E--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--------------------------------------------------~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.- . -.+++.+|+..+|++||++++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l 295 (342)
T cd07879 218 KDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEAL 295 (342)
T ss_pred CCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence 10 0 01789999999999999999874
|
Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13 |
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.1e-16 Score=159.97 Aligned_cols=104 Identities=21% Similarity=0.334 Sum_probs=82.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce-ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS-TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~-~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++.......... ....++..|+|||......++.++|+|||||++||++| |+.|+.
T Consensus 134 di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~ 213 (279)
T cd05057 134 DLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYE 213 (279)
T ss_pred ccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999987653222111 12223567999998877888999999999999999999 998876
Q ss_pred C-Ccc---------------------hHHHHhhcccCCCCCCCCcccc
Q 046589 703 P-KFE---------------------DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 703 ~-~~~---------------------~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
. ... -.+++.+||..+|..||++.++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l 261 (279)
T cd05057 214 GIPAVEIPDLLEKGERLPQPPICTIDVYMVLVKCWMIDAESRPTFKEL 261 (279)
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 2 100 0178899999999999999876
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-16 Score=159.68 Aligned_cols=107 Identities=21% Similarity=0.392 Sum_probs=82.6
Q ss_pred eeccccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCC
Q 046589 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQ 699 (729)
Q Consensus 622 vk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~ 699 (729)
+|+|+||+||+++.++.+|++|||+++........ ......++..|++||......++.++|||||||++||+++ |+.
T Consensus 135 ~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~ 214 (273)
T cd05074 135 IHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQT 214 (273)
T ss_pred eecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCC
Confidence 33399999999999999999999999875432211 1112334567999998877788899999999999999999 777
Q ss_pred CCCCC----------------cc----h--HHHHhhcccCCCCCCCCcccc
Q 046589 700 PTGPK----------------FE----D--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 700 p~~~~----------------~~----~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
|+... +. . .+++.+|++.+|++||++.+|
T Consensus 215 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~ 265 (273)
T cd05074 215 PYAGVENSEIYNYLIKGNRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHL 265 (273)
T ss_pred CCCCCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 75410 00 1 179999999999999999986
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.5e-16 Score=157.33 Aligned_cols=108 Identities=27% Similarity=0.453 Sum_probs=85.6
Q ss_pred eeccccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCC
Q 046589 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQ 699 (729)
Q Consensus 622 vk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~ 699 (729)
+|+|++|+||+++.++.++++|||.++....... .......++..|+|||......++.++||||+||++||+++ |+.
T Consensus 127 ~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~ 206 (262)
T cd00192 127 VHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGAT 206 (262)
T ss_pred ccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCC
Confidence 4449999999999999999999999987653221 11223456678999998877788999999999999999999 588
Q ss_pred CCCCC-cc-------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 700 PTGPK-FE-------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~~-~~-------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+... .. .+ +++..|+..+|++||++++++
T Consensus 207 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~ 258 (262)
T cd00192 207 PYPGLSNEEVLEYLRKGYRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELV 258 (262)
T ss_pred CCCCCCHHHHHHHHHcCCCCCCCccCChHHHHHHHHHccCCcccCcCHHHHH
Confidence 86521 10 01 789999999999999999873
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.9e-16 Score=143.64 Aligned_cols=77 Identities=29% Similarity=0.503 Sum_probs=63.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC----CCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR----ARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~----~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+|||++.+|++|+||||++..+..+.. .+..+|.-.|||||... ...|+-|+||||+|+.|.||++++.|
T Consensus 174 DvKPsNiLIn~~GqVKiCDFGIsG~L~dSiA--kt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~P 251 (282)
T KOG0984|consen 174 DVKPSNILINYDGQVKICDFGISGYLVDSIA--KTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFP 251 (282)
T ss_pred cCCcceEEEccCCcEEEcccccceeehhhhH--HHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhcccc
Confidence 9999999999999999999999987654221 12235667899999653 35789999999999999999999999
Q ss_pred CCC
Q 046589 701 TGP 703 (729)
Q Consensus 701 ~~~ 703 (729)
++-
T Consensus 252 Y~~ 254 (282)
T KOG0984|consen 252 YES 254 (282)
T ss_pred ccc
Confidence 754
|
|
| >cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-16 Score=160.80 Aligned_cols=104 Identities=24% Similarity=0.414 Sum_probs=81.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-----CCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-----ARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-----~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|++|.||+++.++.++++|||++...... ........++..|+|||... ...++.++|||||||++||+++|+.
T Consensus 128 dl~p~nili~~~~~~~l~d~g~~~~~~~~-~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~ 206 (280)
T cd06611 128 DLKAGNILLTLDGDVKLADFGVSAKNKST-LQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEP 206 (280)
T ss_pred CCChhhEEECCCCCEEEccCccchhhccc-ccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCC
Confidence 99999999999999999999988664321 11122345678899999753 3456789999999999999999999
Q ss_pred CCCCC----------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 700 PTGPK----------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~~----------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+... |..+ +++..|+..+|++||++++|+
T Consensus 207 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il 260 (280)
T cd06611 207 PHHELNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELL 260 (280)
T ss_pred CcccCCHHHHHHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhCcCHHHHh
Confidence 97520 1111 799999999999999999874
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti |
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.5e-16 Score=162.20 Aligned_cols=108 Identities=21% Similarity=0.420 Sum_probs=82.1
Q ss_pred eeccccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh--CC
Q 046589 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI--RK 698 (729)
Q Consensus 622 vk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t--g~ 698 (729)
+|+|+||+||+++.++.++++|||+++......... ......+..|+|||......++.++|||||||++|||+| |.
T Consensus 152 ~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~ 231 (296)
T cd05095 152 VHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKE 231 (296)
T ss_pred ecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCC
Confidence 334999999999999999999999998654322111 112233567999997777788999999999999999998 55
Q ss_pred CCCCC-C--------------------c------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGP-K--------------------F------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~-~--------------------~------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+.. . + .. .+++.+||+.+|++||+|.+|+
T Consensus 232 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~ 291 (296)
T cd05095 232 QPYSQLSDEQVIENTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIH 291 (296)
T ss_pred CCccccChHHHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHH
Confidence 66531 0 0 00 1799999999999999999873
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-16 Score=164.35 Aligned_cols=104 Identities=21% Similarity=0.393 Sum_probs=85.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce-ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh--CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS-TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI--RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~-~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t--g~~p~ 701 (729)
|+.++|+|+|.++++||+|||++|-+...+.... .....+++|||+|....+++++++|||+|||.+||+.+ ..+|+
T Consensus 662 d~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py 741 (807)
T KOG1094|consen 662 DLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPY 741 (807)
T ss_pred cccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCch
Confidence 9999999999999999999999997665444433 34566789999998888999999999999999999754 55665
Q ss_pred CC----Ccc-----------------------hH--HHHhhcccCCCCCCCCcccc
Q 046589 702 GP----KFE-----------------------DK--DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 702 ~~----~~~-----------------------~~--~l~~~c~~~~p~~Rp~~~~v 728 (729)
.. +.+ .. ++++.||..+-++||+|+++
T Consensus 742 ~~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~es~~RPsFe~l 797 (807)
T KOG1094|consen 742 SQLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRRESEQRPSFEQL 797 (807)
T ss_pred hhhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhchhhhcCCCHHHH
Confidence 41 000 00 89999999999999999986
|
|
| >PLN03225 Serine/threonine-protein kinase SNT7; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-16 Score=175.15 Aligned_cols=109 Identities=17% Similarity=0.267 Sum_probs=79.8
Q ss_pred eeeccccccceEecC-CccEEEeecCCccccCCCCCcceecccccccccCccccC-C---------------------CC
Q 046589 621 AVKKDIKASNILLNE-DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-A---------------------RK 677 (729)
Q Consensus 621 avk~dlk~~nill~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-~---------------------~~ 677 (729)
+||||+||+|||++. ++.+||+|||+|+..............++.+|+|||... . ..
T Consensus 276 IiHRDLKP~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~ 355 (566)
T PLN03225 276 IVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLN 355 (566)
T ss_pred EEeCcCCHHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhcccc
Confidence 345599999999995 589999999999865432222233456788999999432 1 12
Q ss_pred CCchhhHHHHHHHHHHHHhCCCCCCC-----------------Ccch--------H----------------HHHhhccc
Q 046589 678 ANERDNIYRFGVVLLELVIRKQPTGP-----------------KFED--------K----------------DIVVGCVS 716 (729)
Q Consensus 678 ~~~~~Dv~s~G~vl~el~tg~~p~~~-----------------~~~~--------~----------------~l~~~c~~ 716 (729)
+..++|||||||++|||+++..|.+. .|.. + +++..|++
T Consensus 356 ~~~k~DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~ 435 (566)
T PLN03225 356 LPDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMR 435 (566)
T ss_pred CCCCcccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHcc
Confidence 34567999999999999987665431 1100 0 59999999
Q ss_pred CCCCCCCCccccC
Q 046589 717 DNPIAKPGMLRVQ 729 (729)
Q Consensus 717 ~~p~~Rp~~~~v~ 729 (729)
.+|++|||+++++
T Consensus 436 ~dP~kR~ta~e~L 448 (566)
T PLN03225 436 FKGRQRISAKAAL 448 (566)
T ss_pred CCcccCCCHHHHh
Confidence 9999999999874
|
|
| >cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4 | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.6e-16 Score=160.55 Aligned_cols=104 Identities=20% Similarity=0.280 Sum_probs=83.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.++++|||++....... .......++.+|+|||+.....++.++||||+||++||+++|+.|+...
T Consensus 141 dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~ 219 (292)
T cd06657 141 DIKSDSILLTHDGRVKLSDFGFCAQVSKEV-PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE 219 (292)
T ss_pred CCCHHHEEECCCCCEEEcccccceeccccc-ccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999887654321 1122345678899999887777889999999999999999999987521
Q ss_pred -cc---------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 705 -FE---------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 -~~---------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . .+++.+|++.+|.+||++++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll 268 (292)
T cd06657 220 PPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELL 268 (292)
T ss_pred CHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccCcCHHHHh
Confidence 00 0 1689999999999999999874
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-15 Score=156.70 Aligned_cols=104 Identities=27% Similarity=0.376 Sum_probs=85.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.+|++|||+++....... ......++..|+|||...+...+.++|||||||++|||++|+.|+...
T Consensus 126 dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~ 204 (256)
T cd08221 126 DIKTLNIFLTKAGLIKLGDFGISKILGSEYS-MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDAT 204 (256)
T ss_pred CCChHhEEEeCCCCEEECcCcceEEcccccc-cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCC
Confidence 9999999999999999999999887643221 122345778999999887777888999999999999999999997631
Q ss_pred cc----------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 705 FE----------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~~----------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. ..+++..|+..+|++||++++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll 251 (256)
T cd08221 205 NPLNLVVKIVQGNYTPVVSVYSSELISLVHSLLQQDPEKRPTADEVL 251 (256)
T ss_pred CHHHHHHHHHcCCCCCCccccCHHHHHHHHHHcccCcccCCCHHHHh
Confidence 11 01799999999999999999874
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >smart00219 TyrKc Tyrosine kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-15 Score=156.72 Aligned_cols=105 Identities=25% Similarity=0.434 Sum_probs=82.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|++|+||+++.++.++++|||+++..............++..|+|||......++.++||||+||+++||++ |+.|+..
T Consensus 128 dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~ 207 (258)
T smart00219 128 DLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPG 207 (258)
T ss_pred ccccceEEEccCCeEEEcccCCceecccccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999998765322211112235678999998877788999999999999999999 6776642
Q ss_pred -Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 -KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... . .+++.+|+..+|++|||+.+++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll 255 (258)
T smart00219 208 MSNEEVLEYLKKGYRLPKPENCPPEIYKLMLQCWAEDPEDRPTFSELV 255 (258)
T ss_pred CCHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHH
Confidence 000 0 1799999999999999999863
|
Phosphotransferases. Tyrosine-specific kinase subfamily. |
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.2e-16 Score=159.13 Aligned_cols=107 Identities=24% Similarity=0.432 Sum_probs=83.7
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQ 699 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~ 699 (729)
.+|+|+||+||++++++.+|++|||+++..... ........+..|+|||+.....++.++|||||||++|||+| |+.
T Consensus 133 i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~--~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~ 210 (270)
T cd05047 133 FIHRDLAARNILVGENYVAKIADFGLSRGQEVY--VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGT 210 (270)
T ss_pred EeecccccceEEEcCCCeEEECCCCCccccchh--hhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCC
Confidence 577899999999999999999999998643211 00111233567999998877888999999999999999997 888
Q ss_pred CCCC-C-----------cc--------hH--HHHhhcccCCCCCCCCccccC
Q 046589 700 PTGP-K-----------FE--------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~-~-----------~~--------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.. . +. .+ +++.+||..+|.+|||+++++
T Consensus 211 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il 262 (270)
T cd05047 211 PYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL 262 (270)
T ss_pred CccccCHHHHHHHHhCCCCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHH
Confidence 8742 1 00 01 799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-16 Score=158.64 Aligned_cols=102 Identities=27% Similarity=0.416 Sum_probs=73.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc---ceecccccccccCccccCCC----CC--CchhhHHHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH---ISTDVASAISYVPPEYGRAR----KA--NERDNIYRFGVVLLELV 695 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~---~~~~~~~~~~y~ape~~~~~----~~--~~~~Dv~s~G~vl~el~ 695 (729)
|+|+.|||+..++.+.|+|+|+|......... ......||.+|||||.+... .+ -..+||||||.|+||++
T Consensus 341 DlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEia 420 (513)
T KOG2052|consen 341 DLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIA 420 (513)
T ss_pred ccccccEEEccCCcEEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999765432211 11246899999999977532 11 23589999999999986
Q ss_pred hCC----------CCCC------CC--------------------cchH-------HHHhhcccCCCCCCCCcc
Q 046589 696 IRK----------QPTG------PK--------------------FEDK-------DIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 696 tg~----------~p~~------~~--------------------~~~~-------~l~~~c~~~~p~~Rp~~~ 726 (729)
-+. .|++ +. |... +++..||..+|..|-|+-
T Consensus 421 rRc~~ggi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltAL 494 (513)
T KOG2052|consen 421 RRCESGGIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTAL 494 (513)
T ss_pred HHhhcCCEehhhcCCcccCCCCCCCHHHHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHH
Confidence 422 1222 11 1111 799999999999998763
|
|
| >cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-15 Score=160.34 Aligned_cols=104 Identities=25% Similarity=0.323 Sum_probs=82.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||+++.++.++++|||+++...... .......++..|+|||.... ..++.++|+||+||++|||++|+.|+..
T Consensus 131 dl~p~nili~~~~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~ 209 (293)
T cd07843 131 DLKTSNLLLNNRGILKICDFGLAREYGSPL-KPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPG 209 (293)
T ss_pred cCCHHHEEECCCCcEEEeecCceeeccCCc-cccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999988754321 11223455778999998754 3468899999999999999999887641
Q ss_pred C---------------------------------------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K---------------------------------------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~---------------------------------------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. +.+ .+++..|++.+|++|||++|++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell 288 (293)
T cd07843 210 KSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDAL 288 (293)
T ss_pred CChHHHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHh
Confidence 0 011 1689999999999999999875
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.7e-16 Score=161.03 Aligned_cols=102 Identities=25% Similarity=0.438 Sum_probs=83.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.++++|||++....... .....++..|+|||......++.++|||||||++||++||+.|+...
T Consensus 129 dl~p~nil~~~~~~~~l~d~gl~~~~~~~~---~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~ 205 (284)
T cd06620 129 DIKPSNILVNSRGQIKLCDFGVSGELINSI---ADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFS 205 (284)
T ss_pred CCCHHHEEECCCCcEEEccCCcccchhhhc---cCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCccc
Confidence 899999999999999999999887543211 12345778999999887778889999999999999999999997621
Q ss_pred cc----------------------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 705 FE----------------------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~~----------------------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
-. -.+++.+|++.+|++|||++||+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~ 264 (284)
T cd06620 206 NIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQLC 264 (284)
T ss_pred chhhhhhhhhhHHHHHHHHHhhccCCCCCchhcCHHHHHHHHHHhcCCcccCcCHHHHh
Confidence 00 01689999999999999999874
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3 | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.4e-16 Score=160.32 Aligned_cols=101 Identities=24% Similarity=0.376 Sum_probs=80.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.++++|||++....... .....++..|+|||... ...++.++||||+||++||++||+.|+..
T Consensus 122 dikp~Nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~ 198 (279)
T cd05633 122 DLKPANILLDEHGHVRISDLGLACDFSKKK---PHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQ 198 (279)
T ss_pred CCCHHHEEECCCCCEEEccCCcceeccccC---ccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCC
Confidence 999999999999999999999987543211 12345788999999765 35578999999999999999999999852
Q ss_pred C-c---c------------------h--HHHHhhcccCCCCCCCC-----cccc
Q 046589 704 K-F---E------------------D--KDIVVGCVSDNPIAKPG-----MLRV 728 (729)
Q Consensus 704 ~-~---~------------------~--~~l~~~c~~~~p~~Rp~-----~~~v 728 (729)
. . . . .+++..|+..+|++||+ +.++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~ 252 (279)
T cd05633 199 HKTKDKHEIDRMTLTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEV 252 (279)
T ss_pred CCCcCHHHHHHHhhcCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHH
Confidence 1 0 0 0 17899999999999994 6654
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi |
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-16 Score=170.48 Aligned_cols=78 Identities=26% Similarity=0.421 Sum_probs=64.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC----------------------------------cceecccccccccCc
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS----------------------------------HISTDVASAISYVPP 670 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~----------------------------------~~~~~~~~~~~y~ap 670 (729)
|+||+||+++.++.++++|||+++....... .......||..|+||
T Consensus 126 DLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP 205 (360)
T cd05627 126 DIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAP 205 (360)
T ss_pred CCCHHHEEECCCCCEEEeeccCCcccccccccccccccccCCcccccccccccccccccccccccccccccCCCccccCH
Confidence 9999999999999999999999875421100 001124688999999
Q ss_pred cccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 671 EYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 671 e~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|...+..++.++||||+||++|||+||+.|+.
T Consensus 206 E~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~ 237 (360)
T cd05627 206 EVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFC 237 (360)
T ss_pred HHHcCCCCCCcceeccccceeeecccCCCCCC
Confidence 99888889999999999999999999999985
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.62 E-value=9e-16 Score=161.02 Aligned_cols=107 Identities=21% Similarity=0.439 Sum_probs=82.6
Q ss_pred eccccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh--CCC
Q 046589 623 KKDIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI--RKQ 699 (729)
Q Consensus 623 k~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t--g~~ 699 (729)
|+|+||+||+++.++.++++|||+++........ ......++..|+|||+.....++.++|||||||++||+++ +..
T Consensus 153 H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~ 232 (296)
T cd05051 153 HRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQ 232 (296)
T ss_pred ccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCC
Confidence 3499999999999999999999998865432211 1123345678999998877788999999999999999998 555
Q ss_pred CCCC-C----------c----------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGP-K----------F----------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~-~----------~----------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.. . + .. .+++.+|++.+|++|||+.+|+
T Consensus 233 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~ 291 (296)
T cd05051 233 PYEHLTDQQVIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIH 291 (296)
T ss_pred CCCCcChHHHHHHHHhccccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHH
Confidence 5431 0 0 01 1899999999999999999873
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.5e-16 Score=159.20 Aligned_cols=109 Identities=25% Similarity=0.398 Sum_probs=84.1
Q ss_pred eeeccccccceEecCCc-----cEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHH
Q 046589 621 AVKKDIKASNILLNEDF-----DAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLEL 694 (729)
Q Consensus 621 avk~dlk~~nill~~~~-----~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el 694 (729)
.+|+|++|+||+++.+. .++++|||+++......... ......+..|+|||+.....++.++|||||||++|||
T Consensus 127 i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el 206 (269)
T cd05044 127 FIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEI 206 (269)
T ss_pred cccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHH
Confidence 35669999999999877 89999999987654221111 1122345689999988888889999999999999999
Q ss_pred Hh-CCCCCCCCc--------------c--------hHHHHhhcccCCCCCCCCccccC
Q 046589 695 VI-RKQPTGPKF--------------E--------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 695 ~t-g~~p~~~~~--------------~--------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+| |+.|+.... . -.+++.+|+..+|.+||++++|+
T Consensus 207 lt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~ 264 (269)
T cd05044 207 LTLGQQPYPALNNQEVLQHVTAGGRLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQ 264 (269)
T ss_pred HHcCCCCCcccCHHHHHHHHhcCCccCCcccchHHHHHHHHHHcCCCcccCCCHHHHH
Confidence 98 888864210 0 01799999999999999999873
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10 | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.8e-16 Score=161.91 Aligned_cols=104 Identities=22% Similarity=0.239 Sum_probs=81.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||+++.++.++++|||+++...... .......++..|+|||...+ ..++.++||||+||++|||++|+.|+..
T Consensus 133 dl~p~nil~~~~~~~kL~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~ 211 (309)
T cd07845 133 DLKVSNLLLTDKGCLKIADFGLARTYGLPA-KPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPG 211 (309)
T ss_pred CCCHHHEEECCCCCEEECccceeeecCCcc-CCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999998765321 11222344678999997654 5578899999999999999999988641
Q ss_pred --------------------Cc-----------------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 --------------------KF-----------------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 --------------------~~-----------------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.| .+ .+++..|++.+|++|||+++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il 288 (309)
T cd07845 212 KSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEAL 288 (309)
T ss_pred CCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHh
Confidence 00 00 1689999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing |
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-16 Score=165.93 Aligned_cols=109 Identities=28% Similarity=0.453 Sum_probs=87.9
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~ 698 (729)
++|+|+||+||+++.++.++++|||+++......... .....++..|+|||+.....++.++|||||||++||+++ |+
T Consensus 194 ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~ 273 (337)
T cd05054 194 CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGA 273 (337)
T ss_pred eecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCC
Confidence 7999999999999999999999999998764322211 122345678999998888889999999999999999998 88
Q ss_pred CCCCC-C-cc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGP-K-FE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~-~-~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+.. . .. + .+++.+||+.+|++||+++||+
T Consensus 274 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell 327 (337)
T cd05054 274 SPYPGVQIDEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELV 327 (337)
T ss_pred CCCCCCCccHHHHHHHhccCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 88742 1 00 0 1789999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=160.41 Aligned_cols=102 Identities=21% Similarity=0.370 Sum_probs=79.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC--------------cceecccccccccCccccCCCCCCchhhHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS--------------HISTDVASAISYVPPEYGRARKANERDNIYRFGVV 690 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~--------------~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~v 690 (729)
|+||+||+++.++.++++|||+++....... .......++..|+|||+.....++.++|+|||||+
T Consensus 126 dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~v 205 (305)
T cd05609 126 DLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGII 205 (305)
T ss_pred CCchHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHH
Confidence 9999999999999999999999874211000 00112345778999999877888999999999999
Q ss_pred HHHHHhCCCCCCCC---------------cc-------h--HHHHhhcccCCCCCCCCcc
Q 046589 691 LLELVIRKQPTGPK---------------FE-------D--KDIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 691 l~el~tg~~p~~~~---------------~~-------~--~~l~~~c~~~~p~~Rp~~~ 726 (729)
+||++||+.|+... +. . .+++.+|++.+|++||++.
T Consensus 206 l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~ 265 (305)
T cd05609 206 LYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPLERLGTG 265 (305)
T ss_pred HHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHhccChhhccCcc
Confidence 99999999997521 00 0 1799999999999999953
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-15 Score=158.89 Aligned_cols=105 Identities=24% Similarity=0.358 Sum_probs=82.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||+++.++.++++|||++...............++.+|+|||.... ..++.++||||+||+++|++||+.|+..
T Consensus 124 dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~ 203 (286)
T cd07832 124 DLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPG 203 (286)
T ss_pred CcCHHHEEEcCCCcEEEeeeeecccccCCCCCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCC
Confidence 999999999999999999999988765322212234567789999997654 4468899999999999999999766531
Q ss_pred C--------------------cc-----------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K--------------------FE-----------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~--------------------~~-----------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. |. . .+++.+|+..+|++|||+++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l 280 (286)
T cd07832 204 ENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEAL 280 (286)
T ss_pred CCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHh
Confidence 0 00 0 1799999999999999999874
|
Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea |
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.4e-16 Score=178.17 Aligned_cols=107 Identities=21% Similarity=0.378 Sum_probs=82.9
Q ss_pred eeeccccccceEecC-----------------CccEEEeecCCccccCCCCCcceecccccccccCccccC--CCCCCch
Q 046589 621 AVKKDIKASNILLNE-----------------DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR--ARKANER 681 (729)
Q Consensus 621 avk~dlk~~nill~~-----------------~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~--~~~~~~~ 681 (729)
+||+||||.||+++. ...+||+|||+++..... .......+++.|+|||.+. ...++.+
T Consensus 146 IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~--s~~~s~vGTp~YmAPEvL~ge~~~~s~K 223 (1021)
T PTZ00266 146 VLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIE--SMAHSCVGTPYYWSPELLLHETKSYDDK 223 (1021)
T ss_pred ceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCcccccccc--ccccccCCCccccCHHHHhccCCCCCch
Confidence 345589999999964 235899999999875421 1123446789999999764 3557899
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCC--cc------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 682 DNIYRFGVVLLELVIRKQPTGPK--FE------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 682 ~Dv~s~G~vl~el~tg~~p~~~~--~~------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+|||||||++|||+||+.||... +. . .+++..||..+|++||++.+++
T Consensus 224 SDVWSLG~ILYELLTGk~PF~~~~~~~qli~~lk~~p~lpi~~~S~eL~dLI~~~L~~dPeeRPSa~QlL 293 (1021)
T PTZ00266 224 SDMWALGCIIYELCSGKTPFHKANNFSQLISELKRGPDLPIKGKSKELNILIKNLLNLSAKERPSALQCL 293 (1021)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCcHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHhcCChhHCcCHHHHh
Confidence 99999999999999999998621 10 0 1799999999999999998864
|
|
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.5e-16 Score=159.25 Aligned_cols=100 Identities=20% Similarity=0.329 Sum_probs=77.5
Q ss_pred cccccceEecCCcc--------EEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFD--------AKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELV 695 (729)
Q Consensus 625 dlk~~nill~~~~~--------~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~ 695 (729)
|+||+||+++.++. ++++|||++..... .....++..|+|||.... ..++.++|||||||++||++
T Consensus 125 dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~ 199 (258)
T cd05078 125 NVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLP-----KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIF 199 (258)
T ss_pred CCccceEEEecccccccCCCceEEecccccccccCC-----chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHH
Confidence 99999999987665 58999998865432 122356778999998765 45788999999999999999
Q ss_pred hCCCCC-CC-Cc------------------c-hHHHHhhcccCCCCCCCCccccC
Q 046589 696 IRKQPT-GP-KF------------------E-DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 696 tg~~p~-~~-~~------------------~-~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+|..++ .. .. . -.+++..|++.+|++|||+++++
T Consensus 200 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il 254 (258)
T cd05078 200 SGGDKPLSALDSQKKLQFYEDRHQLPAPKWTELANLINQCMDYEPDFRPSFRAII 254 (258)
T ss_pred cCCCCChhhccHHHHHHHHHccccCCCCCcHHHHHHHHHHhccChhhCCCHHHHH
Confidence 996443 31 10 0 11799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >cd05122 PKc_STE Catalytic domain of STE family Protein Kinases | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-15 Score=155.22 Aligned_cols=103 Identities=31% Similarity=0.527 Sum_probs=84.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|.||+++.++.++++|||.+........ .....++..|+|||+.....++.++|||||||+++|+++|+.|+...
T Consensus 123 dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~ 200 (253)
T cd05122 123 DIKAANILLTSDGEVKLIDFGLSAQLSDTKA--RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSEL 200 (253)
T ss_pred CCCHHHEEEccCCeEEEeecccccccccccc--ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999999998877653221 22346678899999887777889999999999999999999987521
Q ss_pred ------------------c----ch--HHHHhhcccCCCCCCCCccccC
Q 046589 705 ------------------F----ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ------------------~----~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+ .. .+++..|+..+|++|||+++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l 249 (253)
T cd05122 201 PPMKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLL 249 (253)
T ss_pred chHHHHHHHHhcCCCCcCcccccCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 0 11 1799999999999999999874
|
Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core |
| >cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=157.39 Aligned_cols=105 Identities=23% Similarity=0.424 Sum_probs=82.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCC--CCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRAR--KANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~--~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|++++||+++.++.++++|||+++........ ......++..|+|||..... .++.++||||+||++||+++|+.|+
T Consensus 133 dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~ 212 (272)
T cd06629 133 DLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPW 212 (272)
T ss_pred CCChhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999998764321111 11234567889999976553 3788999999999999999999997
Q ss_pred CC-C--------------------c----c--hHHHHhhcccCCCCCCCCccccC
Q 046589 702 GP-K--------------------F----E--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~-~--------------------~----~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . + . -.+++..|+..+|+.||++++|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il 267 (272)
T cd06629 213 SDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARELL 267 (272)
T ss_pred cCcchHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHHHh
Confidence 41 0 0 0 01789999999999999999875
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte |
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-16 Score=168.17 Aligned_cols=109 Identities=24% Similarity=0.422 Sum_probs=86.8
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~ 698 (729)
.+|||+||+||+++.+++++++|||+++......... .....++..|+|||......++.++|||||||++|||++ |+
T Consensus 233 iiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~ 312 (374)
T cd05106 233 CIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGK 312 (374)
T ss_pred EEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCC
Confidence 6899999999999999999999999987654322111 112334567999998877889999999999999999997 99
Q ss_pred CCCCCC--------------------cc-h--HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGPK--------------------FE-D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~~--------------------~~-~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+... +. . .+++.+||+.+|++|||+++|+
T Consensus 313 ~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~ 366 (374)
T cd05106 313 SPYPGILVNSKFYKMVKRGYQMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQIS 366 (374)
T ss_pred CCCccccccHHHHHHHHcccCccCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 887520 00 0 1799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-15 Score=156.33 Aligned_cols=104 Identities=26% Similarity=0.554 Sum_probs=85.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.++++|||++......... .....++..|+|||......++.++||||||+++||++||+.|+...
T Consensus 125 ~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~ 203 (264)
T cd06623 125 DIKPSNLLINSKGEVKIADFGISKVLENTLDQ-CNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPP 203 (264)
T ss_pred CCCHHHEEECCCCCEEEccCccceecccCCCc-ccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence 89999999999999999999998876532211 12345677899999988888899999999999999999999997532
Q ss_pred ------------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 705 ------------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ------------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+... +++..|+..+|++||++++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll 254 (264)
T cd06623 204 GQPSFFELMQAICDGPPPSLPAEEFSPEFRDFISACLQKDPKKRPSAAELL 254 (264)
T ss_pred cccCHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHccCChhhCCCHHHHH
Confidence 1111 789999999999999999874
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of |
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=160.81 Aligned_cols=105 Identities=28% Similarity=0.357 Sum_probs=81.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc----------ceecccccccccCccccCC-CCCCchhhHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH----------ISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLE 693 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~----------~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~e 693 (729)
|+||+||++++++.++++|||+++........ ..+...++..|+|||.... ..++.++|||||||++||
T Consensus 140 dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e 219 (311)
T cd07866 140 DIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAE 219 (311)
T ss_pred CCCHHHEEECCCCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHH
Confidence 99999999999999999999999865422111 1112345678999997643 457889999999999999
Q ss_pred HHhCCCCCCCC--------------------cc-------------------------------hHHHHhhcccCCCCCC
Q 046589 694 LVIRKQPTGPK--------------------FE-------------------------------DKDIVVGCVSDNPIAK 722 (729)
Q Consensus 694 l~tg~~p~~~~--------------------~~-------------------------------~~~l~~~c~~~~p~~R 722 (729)
|++|+.|+... |. ..+++.+|+..+|++|
T Consensus 220 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R 299 (311)
T cd07866 220 MFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKR 299 (311)
T ss_pred HHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccC
Confidence 99999886410 00 0179999999999999
Q ss_pred CCccccC
Q 046589 723 PGMLRVQ 729 (729)
Q Consensus 723 p~~~~v~ 729 (729)
||+.+++
T Consensus 300 ~t~~ell 306 (311)
T cd07866 300 LTASDAL 306 (311)
T ss_pred cCHHHHh
Confidence 9999874
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-15 Score=161.60 Aligned_cols=109 Identities=26% Similarity=0.426 Sum_probs=83.5
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~ 698 (729)
.+|+|+||+||+++.++.++++|||.++......... ......+..|+|||...+..++.++|||||||++|||++ |+
T Consensus 161 i~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~ 240 (307)
T cd05098 161 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGG 240 (307)
T ss_pred cccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCC
Confidence 4566999999999999999999999987653211111 111223457999998877888999999999999999998 77
Q ss_pred CCCCC-Ccc-------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGP-KFE-------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~-~~~-------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+.. ... .+ +++.+|+..+|++||||.+|+
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl 293 (307)
T cd05098 241 SPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLV 293 (307)
T ss_pred CCCCcCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHH
Confidence 77542 110 01 799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=157.79 Aligned_cols=107 Identities=23% Similarity=0.366 Sum_probs=77.9
Q ss_pred eeccccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccC-------CCCCCchhhHHHHHHHHHH
Q 046589 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGR-------ARKANERDNIYRFGVVLLE 693 (729)
Q Consensus 622 vk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~-------~~~~~~~~Dv~s~G~vl~e 693 (729)
||+|+||.||+++.++.+|++|||+++........ ......++..|+|||+.. ...++.++|||||||++||
T Consensus 122 vH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~e 201 (269)
T cd05042 122 IHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWE 201 (269)
T ss_pred ecccccHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHH
Confidence 34499999999999999999999998764322111 112234456799999653 2456889999999999999
Q ss_pred HHh-CCCCCCCC----------------cc---------h--HHHHhhcccCCCCCCCCccccC
Q 046589 694 LVI-RKQPTGPK----------------FE---------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 694 l~t-g~~p~~~~----------------~~---------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|++ |+.|+... +. + .+++..|| .+|++|||+++|+
T Consensus 202 l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~ 264 (269)
T cd05042 202 LFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVH 264 (269)
T ss_pred HHhCCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHHHHh-cCcccccCHHHHH
Confidence 999 66665410 00 0 16888898 5999999999873
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina |
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=161.84 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=82.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc----------------------------eecccccccccCccccCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI----------------------------STDVASAISYVPPEYGRAR 676 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~----------------------------~~~~~~~~~y~ape~~~~~ 676 (729)
|+||+||+++.++.++++|||++.......... .....++..|+|||...+.
T Consensus 128 dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~ 207 (316)
T cd05574 128 DLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGD 207 (316)
T ss_pred CCChHHeEEcCCCCEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCC
Confidence 999999999999999999999887643211100 0112467789999988877
Q ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCC-Cc--------------c--------hHHHHhhcccCCCCCCCC----cccc
Q 046589 677 KANERDNIYRFGVVLLELVIRKQPTGP-KF--------------E--------DKDIVVGCVSDNPIAKPG----MLRV 728 (729)
Q Consensus 677 ~~~~~~Dv~s~G~vl~el~tg~~p~~~-~~--------------~--------~~~l~~~c~~~~p~~Rp~----~~~v 728 (729)
.++.++|||||||++||+++|+.|+.. .. . -.+++.+|++.+|++||+ ++++
T Consensus 208 ~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~l 286 (316)
T cd05574 208 GHGSAVDWWTLGILLYEMLYGTTPFKGSNRDETFSNILKKEVTFPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEI 286 (316)
T ss_pred CCCchHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHhcCCccCCCccccCHHHHHHHHHHccCCHhHCCCchhhHHHH
Confidence 889999999999999999999999752 10 0 018999999999999999 6665
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=158.58 Aligned_cols=105 Identities=25% Similarity=0.327 Sum_probs=84.0
Q ss_pred eccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 623 KKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 623 k~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+|++++||+++.++.++++|||++........ .....++..|+|||......++.++|||||||++|||+||+.|+.
T Consensus 130 h~~l~~~nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~ 207 (287)
T cd07838 130 HRDLKPQNILVTSDGQVKIADFGLARIYSFEMA--LTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFR 207 (287)
T ss_pred eccCChhhEEEccCCCEEEeccCcceeccCCcc--cccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCccc
Confidence 339999999999999999999999877643211 122345778999999888888999999999999999999988764
Q ss_pred CCc--------------------c--------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PKF--------------------E--------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~--------------------~--------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..- . . .+++..|++.+|++||++++++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il 282 (287)
T cd07838 208 GTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEAL 282 (287)
T ss_pred CCChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHh
Confidence 210 0 0 1688999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both |
| >cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-15 Score=160.22 Aligned_cols=105 Identities=26% Similarity=0.296 Sum_probs=81.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc---ceecccccccccCccccCCC-CCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH---ISTDVASAISYVPPEYGRAR-KANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~---~~~~~~~~~~y~ape~~~~~-~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++.+|++|||++......... ......++..|+|||..... .++.++|||||||++|||+||+.|
T Consensus 144 dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~ 223 (310)
T cd07865 144 DMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPI 223 (310)
T ss_pred CCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999865432111 11234567789999976543 467899999999999999999887
Q ss_pred CCCCcc-----------------------------------------------------hHHHHhhcccCCCCCCCCccc
Q 046589 701 TGPKFE-----------------------------------------------------DKDIVVGCVSDNPIAKPGMLR 727 (729)
Q Consensus 701 ~~~~~~-----------------------------------------------------~~~l~~~c~~~~p~~Rp~~~~ 727 (729)
+..... ..+++..|+..+|++|||+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e 303 (310)
T cd07865 224 MQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADT 303 (310)
T ss_pred CCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHH
Confidence 642100 015899999999999999998
Q ss_pred cC
Q 046589 728 VQ 729 (729)
Q Consensus 728 v~ 729 (729)
++
T Consensus 304 ~l 305 (310)
T cd07865 304 AL 305 (310)
T ss_pred Hh
Confidence 74
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl |
| >cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-15 Score=163.76 Aligned_cols=76 Identities=29% Similarity=0.384 Sum_probs=63.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++..... .......++..|+|||......++.++||||+||++|||++|+.|+.
T Consensus 143 dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~ 218 (353)
T cd07850 143 DLKPSNIVVKSDCTLKILDFGLARTAGTS--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFP 218 (353)
T ss_pred CCCHHHEEECCCCCEEEccCccceeCCCC--CCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999875421 11223456788999998888888999999999999999999998763
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK |
| >cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-15 Score=162.54 Aligned_cols=105 Identities=28% Similarity=0.346 Sum_probs=82.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC----cceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS----HISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~----~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|++|+||+++.++.+|++|||+++....... .......++.+|+|||.... ..++.++|||||||++|||+||+.
T Consensus 132 dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~ 211 (337)
T cd07852 132 DLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKP 211 (337)
T ss_pred CCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999987543221 11223467889999997644 557889999999999999999998
Q ss_pred CCCCCc--------------------------------------------------c--hHHHHhhcccCCCCCCCCccc
Q 046589 700 PTGPKF--------------------------------------------------E--DKDIVVGCVSDNPIAKPGMLR 727 (729)
Q Consensus 700 p~~~~~--------------------------------------------------~--~~~l~~~c~~~~p~~Rp~~~~ 727 (729)
|+...- . -.+++.+|++.+|++|||+++
T Consensus 212 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~ 291 (337)
T cd07852 212 LFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEE 291 (337)
T ss_pred CCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHH
Confidence 874100 0 016889999999999999998
Q ss_pred cC
Q 046589 728 VQ 729 (729)
Q Consensus 728 v~ 729 (729)
++
T Consensus 292 il 293 (337)
T cd07852 292 AL 293 (337)
T ss_pred Hh
Confidence 74
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul |
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-15 Score=155.06 Aligned_cols=97 Identities=22% Similarity=0.380 Sum_probs=80.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|.||+++.++.++++|||+++.... .....++..|+|||...+..++.++||||+||++||++||+.|+...
T Consensus 122 dl~p~nil~~~~~~~~l~dfg~~~~~~~-----~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~ 196 (260)
T cd05611 122 DIKPENLLIDQTGHLKLTDFGLSRNGLE-----NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAE 196 (260)
T ss_pred CCCHHHeEECCCCcEEEeecccceeccc-----cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCC
Confidence 9999999999999999999998876432 12234667899999887777899999999999999999999997521
Q ss_pred ---------------cc--------h--HHHHhhcccCCCCCCCCcc
Q 046589 705 ---------------FE--------D--KDIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 705 ---------------~~--------~--~~l~~~c~~~~p~~Rp~~~ 726 (729)
|. . .+++.+|+..+|++||++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~ 243 (260)
T cd05611 197 TPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGAN 243 (260)
T ss_pred CHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCC
Confidence 11 0 1799999999999999774
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-15 Score=156.07 Aligned_cols=106 Identities=21% Similarity=0.346 Sum_probs=76.7
Q ss_pred eccccccceEecCCccEEEeecCCccccCCCC-CcceecccccccccCccccCC-------CCCCchhhHHHHHHHHHHH
Q 046589 623 KKDIKASNILLNEDFDAKVLDFGLARLISDCK-SHISTDVASAISYVPPEYGRA-------RKANERDNIYRFGVVLLEL 694 (729)
Q Consensus 623 k~dlk~~nill~~~~~~kl~dfgl~~~~~~~~-~~~~~~~~~~~~y~ape~~~~-------~~~~~~~Dv~s~G~vl~el 694 (729)
|+|+||+||+++.++.++++|||++....... ........++..|+|||+... ..++.++|||||||++|||
T Consensus 122 H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el 201 (268)
T cd05086 122 HSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWEL 201 (268)
T ss_pred ccCCccceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHH
Confidence 33999999999999999999999886432211 111123456778999997632 3457889999999999999
Q ss_pred HhC-CCCCCCCcc-------------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 695 VIR-KQPTGPKFE-------------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 695 ~tg-~~p~~~~~~-------------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+++ ..|+..... +. +++..|| .+|++||+|++|+
T Consensus 202 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~ 263 (268)
T cd05086 202 FENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYEVLQFCW-LSPEKRATAEEVH 263 (268)
T ss_pred HhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcHHHHHHHHHHh-hCcccCCCHHHHH
Confidence 975 445531000 00 6888999 5699999999874
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage |
| >cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-15 Score=162.64 Aligned_cols=105 Identities=24% Similarity=0.365 Sum_probs=82.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc---ceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH---ISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~---~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++.+|++|||+++........ ......++.+|+|||.... ..++.++|||||||++|||++|+.|
T Consensus 132 dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~p 211 (334)
T cd07855 132 DLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQL 211 (334)
T ss_pred CCCHHHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999765422111 1123467789999997654 4578999999999999999999998
Q ss_pred CCCC-------------------------------------------cc-------h--HHHHhhcccCCCCCCCCcccc
Q 046589 701 TGPK-------------------------------------------FE-------D--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 701 ~~~~-------------------------------------------~~-------~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
+... |. . .+++..|++.+|++||+++++
T Consensus 212 f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~ 291 (334)
T cd07855 212 FPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQA 291 (334)
T ss_pred cCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 7421 00 0 069999999999999999986
Q ss_pred C
Q 046589 729 Q 729 (729)
Q Consensus 729 ~ 729 (729)
+
T Consensus 292 l 292 (334)
T cd07855 292 L 292 (334)
T ss_pred H
Confidence 4
|
Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the |
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-16 Score=164.83 Aligned_cols=104 Identities=24% Similarity=0.452 Sum_probs=83.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-----CCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-----ARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-----~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+|+.|||++-+|.++++|||++.-... .........||++|||||... ..+|+.++||||||+.+.||..+.+
T Consensus 155 DLKAGNiL~TldGdirLADFGVSAKn~~-t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEP 233 (1187)
T KOG0579|consen 155 DLKAGNILLTLDGDIRLADFGVSAKNKS-TRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEP 233 (1187)
T ss_pred hccccceEEEecCcEeeecccccccchh-HHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCC
Confidence 9999999999999999999998754321 111122468899999999643 5789999999999999999999987
Q ss_pred CCC---------------------C-CcchH--HHHhhcccCCCCCCCCccccC
Q 046589 700 PTG---------------------P-KFEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~---------------------~-~~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|-. + .|... ++...|+..+|+.||++.+++
T Consensus 234 PHhelnpMRVllKiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll 287 (1187)
T KOG0579|consen 234 PHHELNPMRVLLKIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLL 287 (1187)
T ss_pred CccccchHHHHHHHhhcCCCcccCcchhhhHHHHHHHHHHhcCCccCCCHHHHh
Confidence 743 1 34433 899999999999999998763
|
|
| >cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-15 Score=162.81 Aligned_cols=104 Identities=27% Similarity=0.342 Sum_probs=82.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||.... ..++.++|||||||++|||++|+.|+..
T Consensus 133 dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~ 211 (337)
T cd07858 133 DLKPSNLLLNANCDLKICDFGLARTTSEKG-DFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPG 211 (337)
T ss_pred CCCHHHEEEcCCCCEEECcCccccccCCCc-ccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999998754321 11223456778999997643 4578899999999999999999988742
Q ss_pred C--------------------c-----------------------c-------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K--------------------F-----------------------E-------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~--------------------~-----------------------~-------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. + . + .+++.+|+..+|++|||+++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell 289 (337)
T cd07858 212 KDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEAL 289 (337)
T ss_pred CChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHH
Confidence 0 0 0 0 1789999999999999999874
|
Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati |
| >cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-15 Score=157.19 Aligned_cols=105 Identities=28% Similarity=0.340 Sum_probs=82.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||++++++.++++|||++...............++..|+|||...+ ..++.++|||||||++||++||+.|+..
T Consensus 125 dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~ 204 (287)
T cd07840 125 DIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQG 204 (287)
T ss_pred cCcHHHeEEcCCCCEEEccccceeeccCCCcccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999998765432212233455678999996543 4578899999999999999999988641
Q ss_pred --------------------Ccc------------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 --------------------KFE------------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 --------------------~~~------------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|. . .+++..|++.+|++||++++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l 282 (287)
T cd07840 205 STELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQAL 282 (287)
T ss_pred CChHHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence 010 0 0689999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po |
| >cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-15 Score=160.88 Aligned_cols=100 Identities=25% Similarity=0.418 Sum_probs=80.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC---CCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|++|+||+++.++.++++|||++...... ....++..|+|||... ...++.++|||||||++||+++|+.|+
T Consensus 140 dl~p~nil~~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~ 214 (308)
T cd06634 140 DVKAGNILLSEPGLVKLGDFGSASIMAPA-----NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 214 (308)
T ss_pred CCCHHhEEECCCCcEEECCcccceeecCc-----ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999998765421 2235677899999753 355788999999999999999999996
Q ss_pred CC-C--------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP-K--------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~-~--------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . +.. .+++.+||+.+|++||++++|+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll 265 (308)
T cd06634 215 FNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLL 265 (308)
T ss_pred ccccHHHHHHHHhhcCCCCcCcccccHHHHHHHHHHhhCCcccCCCHHHHh
Confidence 42 0 000 1789999999999999999874
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin |
| >cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-15 Score=157.93 Aligned_cols=104 Identities=25% Similarity=0.455 Sum_probs=83.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|+||+++.++.++++|||++....... .......++.+|+|||......++.++|||||||++||++||+.|+...
T Consensus 141 dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~ 219 (286)
T cd06614 141 DIKSDNILLSKDGSVKLADFGFAAQLTKEK-SKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLRE 219 (286)
T ss_pred CCChhhEEEcCCCCEEECccchhhhhccch-hhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999876654211 1112334667899999887778899999999999999999999986521
Q ss_pred ----------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 705 ----------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ----------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+.. .+++.+|++.+|..||++++|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il 268 (286)
T cd06614 220 PPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELL 268 (286)
T ss_pred CHHHHHHHHHhcCCCCCcchhhCCHHHHHHHHHHhccChhhCcCHHHHh
Confidence 111 1789999999999999999874
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou |
| >cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-15 Score=157.85 Aligned_cols=102 Identities=25% Similarity=0.469 Sum_probs=83.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+++.||+++.++.++++|||++....... .....++..|+|||......++.++||||+||++|||+||+.|+...
T Consensus 130 dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~ 206 (287)
T cd06621 130 DIKPSNILLTRKGQVKLCDFGVSGELVNSL---AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPE 206 (287)
T ss_pred CCCHHHEEEecCCeEEEeeccccccccccc---cccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence 999999999999999999999987643211 12335677899999888788899999999999999999999987532
Q ss_pred -c------------------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 705 -F------------------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 -~------------------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .+ .+++.+|+..+|++|||+.||+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil 264 (287)
T cd06621 207 GEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDML 264 (287)
T ss_pred cCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHH
Confidence 0 00 1788999999999999999874
|
Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-15 Score=156.38 Aligned_cols=102 Identities=24% Similarity=0.238 Sum_probs=80.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|.||+++. +.+|++|||+++....... .....++..|+|||... ...++.++||||+||++|||++|+.|+..
T Consensus 125 dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~ 201 (282)
T cd07831 125 DIKPENILIKD-DILKLADFGSCRGIYSKPP--YTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPG 201 (282)
T ss_pred ccCHHHEEEcC-CCeEEEecccccccccCCC--cCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCC
Confidence 99999999999 9999999999987543211 12335678899999654 45568899999999999999999888742
Q ss_pred C---------------------------------cc---------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K---------------------------------FE---------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~---------------------------------~~---------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. +. . .+++.+|+..+|++||++++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l 277 (282)
T cd07831 202 TNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQAL 277 (282)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHh
Confidence 1 00 0 1789999999999999999874
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3 | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-15 Score=158.53 Aligned_cols=100 Identities=28% Similarity=0.418 Sum_probs=81.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC---CCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|++|+||+++.++.++++|||++..... .....++..|+|||+.. ...++.++|||||||++|||++|+.|+
T Consensus 146 dl~p~nili~~~~~~kL~dfg~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~ 220 (313)
T cd06633 146 DIKAGNILLTEPGQVKLADFGSASKSSP-----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 220 (313)
T ss_pred CCChhhEEECCCCCEEEeecCCCcccCC-----CCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999998865322 12345677899999863 356788999999999999999999997
Q ss_pred CCC---------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPK---------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~---------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... |.. .+++.+|++.+|.+||++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l 271 (313)
T cd06633 221 FNMNAMSALYHIAQNDSPTLQSNEWTDSFRGFVDYCLQKIPQERPASAELL 271 (313)
T ss_pred CCCChHHHHHHHHhcCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 520 111 1799999999999999999874
|
Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co |
| >cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-15 Score=159.17 Aligned_cols=105 Identities=30% Similarity=0.489 Sum_probs=83.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc--eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI--STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~--~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||.||+++.++.++++|||++.......... ......+..|+|||......++.++|||||||+++||+||+.|+.
T Consensus 134 dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~ 213 (284)
T cd05038 134 DLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQ 213 (284)
T ss_pred CCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcc
Confidence 999999999999999999999998765322111 112234456999998877788999999999999999999999865
Q ss_pred CC---c-----------c---------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PK---F-----------E---------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~---~-----------~---------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . . .. +++.+|+..+|++||||+||+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~ 277 (284)
T cd05038 214 SPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLI 277 (284)
T ss_pred cccchhccccccccccccHHHHHHHHHcCCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHH
Confidence 21 1 0 00 789999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut |
| >PLN00009 cyclin-dependent kinase A; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-15 Score=157.69 Aligned_cols=104 Identities=22% Similarity=0.281 Sum_probs=80.1
Q ss_pred cccccceEecC-CccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNE-DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|++|+||+++. +..+|++|||+++..... ........++..|+|||+..+ ..++.++||||+||++|||+||+.|+.
T Consensus 127 dl~p~nill~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~ 205 (294)
T PLN00009 127 DLKPQNLLIDRRTNALKLADFGLARAFGIP-VRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFP 205 (294)
T ss_pred CCCcceEEEECCCCEEEEcccccccccCCC-ccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999985 567899999999764321 111223456788999997654 457889999999999999999998863
Q ss_pred CC--------------------c----------------c------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PK--------------------F----------------E------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~--------------------~----------------~------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. | . + .+++.+|++.+|++||++++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l 282 (294)
T PLN00009 206 GDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAAL 282 (294)
T ss_pred CCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHh
Confidence 10 0 0 0 1688999999999999999874
|
|
| >cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-15 Score=153.37 Aligned_cols=102 Identities=20% Similarity=0.384 Sum_probs=84.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+++.||+++.++.+|++|||+++..... ......++..|+|||+.....++.++|+||+|+++||+++|+.|+...
T Consensus 128 ~l~~~ni~~~~~~~~kl~d~g~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~ 204 (256)
T cd08530 128 DLKSANILLVANDLVKIGDLGISKVLKKN---MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEAR 204 (256)
T ss_pred CCCcceEEEecCCcEEEeeccchhhhccC---CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999876532 122345677899999988888889999999999999999999997631
Q ss_pred cc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 705 FE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
-. . .+++.+|+..+|++||++++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l 251 (256)
T cd08530 205 SMQDLRYKVQRGKYPPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKIL 251 (256)
T ss_pred CHHHHHHHHhcCCCCCCchhhCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence 00 0 1799999999999999999874
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an |
| >KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.8e-16 Score=150.52 Aligned_cols=78 Identities=28% Similarity=0.371 Sum_probs=63.6
Q ss_pred cccccceEecCC----ccEEEeecCCccccCCCCCc--ceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhC
Q 046589 625 DIKASNILLNED----FDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIR 697 (729)
Q Consensus 625 dlk~~nill~~~----~~~kl~dfgl~~~~~~~~~~--~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg 697 (729)
|+||.||++..+ |.+||+|+|+||.+...-.. ....++.|+||.|||.+-+ ..|+...||||.|||+.||+|.
T Consensus 157 DLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl 236 (438)
T KOG0666|consen 157 DLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTL 236 (438)
T ss_pred cCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHcc
Confidence 999999999877 89999999999987632111 1225688999999997654 6789999999999999999997
Q ss_pred CCCCC
Q 046589 698 KQPTG 702 (729)
Q Consensus 698 ~~p~~ 702 (729)
++-|.
T Consensus 237 ~PlF~ 241 (438)
T KOG0666|consen 237 EPLFK 241 (438)
T ss_pred Ccccc
Confidence 76443
|
|
| >PHA03210 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-15 Score=170.73 Aligned_cols=79 Identities=24% Similarity=0.310 Sum_probs=65.5
Q ss_pred eeccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 622 vk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
||||+||+||+++.++.+||+|||+++..............++..|+|||......++.++|||||||++|||++|+.+
T Consensus 289 iHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~ 367 (501)
T PHA03210 289 IHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFC 367 (501)
T ss_pred ecCCCCHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 3449999999999999999999999987653222222345688999999998888899999999999999999998754
|
|
| >cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-15 Score=156.59 Aligned_cols=101 Identities=23% Similarity=0.367 Sum_probs=81.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.++++|||+++...... .....++..|+|||.... ..++.++||||+||++|||++|+.|+..
T Consensus 122 di~p~nili~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~ 198 (278)
T cd05606 122 DLKPANILLDEHGHVRISDLGLACDFSKKK---PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQ 198 (278)
T ss_pred CCCHHHEEECCCCCEEEccCcCccccCccC---CcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999987654211 123467889999998764 3578899999999999999999999752
Q ss_pred C------------------cc----hH--HHHhhcccCCCCCCC-----Ccccc
Q 046589 704 K------------------FE----DK--DIVVGCVSDNPIAKP-----GMLRV 728 (729)
Q Consensus 704 ~------------------~~----~~--~l~~~c~~~~p~~Rp-----~~~~v 728 (729)
. +. .. +++.+|+..+|+.|| +++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~l 252 (278)
T cd05606 199 HKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEV 252 (278)
T ss_pred CCccchHHHHHHhhccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHH
Confidence 1 00 01 799999999999999 77765
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co |
| >cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-15 Score=155.40 Aligned_cols=103 Identities=24% Similarity=0.318 Sum_probs=81.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+++.||+++.++.++++|||+++....... .....++..|+|||... ...++.++|+|||||+++|++||+.|+..
T Consensus 124 dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~ 201 (283)
T cd07830 124 DLKPENLLVSGPEVVKIADFGLAREIRSRPP--YTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPG 201 (283)
T ss_pred CCChhhEEEcCCCCEEEeecccceeccCCCC--cCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCC
Confidence 9999999999999999999999886543211 12345677899999764 45578899999999999999999987631
Q ss_pred -C-------------------cc-------------------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 -K-------------------FE-------------------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~-------------------~~-------------------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. |. -.+++.+|++.+|++|||++|++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~ 278 (283)
T cd07830 202 SSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQAL 278 (283)
T ss_pred CChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHh
Confidence 0 00 01789999999999999999875
|
Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili |
| >cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-15 Score=156.99 Aligned_cols=104 Identities=23% Similarity=0.373 Sum_probs=81.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCC--CCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARK--ANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~--~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|++|.||+++.++.++++|||+++..............++..|+|||...... .+.++||||||+++|||+||..|+.
T Consensus 130 dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~ 209 (288)
T cd05583 130 DIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFT 209 (288)
T ss_pred CCCHHHeEECCCCCEEEEECccccccccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcc
Confidence 99999999999999999999998875432222222345678999999865543 6889999999999999999999974
Q ss_pred C--Ccc---------------------h--HHHHhhcccCCCCCCCCcccc
Q 046589 703 P--KFE---------------------D--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 703 ~--~~~---------------------~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
. .+. . .+++.+|++.+|++|||+.+|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~ 260 (288)
T cd05583 210 VDGEQNSQSEISRRILKSKPPFPKTMSAEARDFIQKLLEKDPKKRLGANGA 260 (288)
T ss_pred cCcccchHHHHHHHHHccCCCCCcccCHHHHHHHHHHhcCCHhhccCcchH
Confidence 2 100 0 178899999999999998765
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines |
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-15 Score=159.70 Aligned_cols=109 Identities=22% Similarity=0.398 Sum_probs=83.7
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~ 698 (729)
.+|+|+||+||+++.++.+|++|||+++......... .....++..|+|||......++.++|||||||++||+++ |+
T Consensus 155 i~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~ 234 (314)
T cd05099 155 CIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGG 234 (314)
T ss_pred eeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCC
Confidence 4666999999999999999999999998654211111 111223457999998877888999999999999999999 77
Q ss_pred CCCCC-Cc-------------c--------hHHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGP-KF-------------E--------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~-~~-------------~--------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+.. .. . -.+++.+|+..+|++|||+.+++
T Consensus 235 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll 287 (314)
T cd05099 235 SPYPGIPVEELFKLLREGHRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLV 287 (314)
T ss_pred CCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHH
Confidence 77542 00 0 01799999999999999998863
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-15 Score=156.14 Aligned_cols=104 Identities=22% Similarity=0.247 Sum_probs=83.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC-CCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR-KANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~-~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||+++.++.++++|||.+....... .......++..|+|||..... .++.++||||+||++|+++||+.|+..
T Consensus 123 dl~p~nili~~~~~~~l~df~~~~~~~~~~-~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~ 201 (283)
T cd05118 123 DLKPENLLINTEGVLKLADFGLARSFGSPV-RPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPG 201 (283)
T ss_pred CcCHHHEEECCCCcEEEeeeeeeEecCCCc-ccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999988765422 112234567789999987665 678999999999999999999987631
Q ss_pred -Cc----------------------ch----------------------------HHHHhhcccCCCCCCCCccccC
Q 046589 704 -KF----------------------ED----------------------------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~----------------------~~----------------------------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .+ .+++..|+..+|.+||++++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll 278 (283)
T cd05118 202 KSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQAL 278 (283)
T ss_pred CCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHh
Confidence 00 00 0789999999999999999874
|
Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They |
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-15 Score=155.35 Aligned_cols=104 Identities=24% Similarity=0.353 Sum_probs=83.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC----cceecccccccccCccccCC---C-CCCchhhHHHHHHHHHHHHh
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS----HISTDVASAISYVPPEYGRA---R-KANERDNIYRFGVVLLELVI 696 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~----~~~~~~~~~~~y~ape~~~~---~-~~~~~~Dv~s~G~vl~el~t 696 (729)
||||+|+|+++++++||+|||.+..+..... .......||+.++|||...+ . ....+.||||+||.+|-++.
T Consensus 235 DIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllf 314 (576)
T KOG0585|consen 235 DIKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLF 314 (576)
T ss_pred ccchhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhh
Confidence 9999999999999999999999987632111 11234689999999997654 2 23677999999999999999
Q ss_pred CCCCCCCCcch-----------------------HHHHhhcccCCCCCCCCcccc
Q 046589 697 RKQPTGPKFED-----------------------KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 697 g~~p~~~~~~~-----------------------~~l~~~c~~~~p~~Rp~~~~v 728 (729)
|+.||..++.. ++++.+.++.||++|.+..+|
T Consensus 315 G~~PF~~~~~~~l~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~i 369 (576)
T KOG0585|consen 315 GQLPFFDDFELELFDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDI 369 (576)
T ss_pred ccCCcccchHHHHHHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhh
Confidence 99998742221 189999999999999998876
|
|
| >cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12 | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-15 Score=157.32 Aligned_cols=105 Identities=29% Similarity=0.360 Sum_probs=82.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||++++++.+|++|||+++..............++..|+|||.... ..++.++|||||||++|||++|+.|+..
T Consensus 141 dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~ 220 (302)
T cd07864 141 DIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQA 220 (302)
T ss_pred CCCHHHEEECCCCcEEeCcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999998765322222223345678999997643 4568899999999999999999987741
Q ss_pred C--------------------c-----------------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K--------------------F-----------------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~--------------------~-----------------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. | .. .+++..|+..+|++||++++|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il 297 (302)
T cd07864 221 NQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEAL 297 (302)
T ss_pred CChHHHHHHHHHHhCCCChhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 0 0 00 1789999999999999999875
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely |
| >cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-15 Score=157.64 Aligned_cols=104 Identities=24% Similarity=0.299 Sum_probs=80.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||+++.++.++++|||+++...... .......++..|+|||...+ ..++.++|||||||++||+++|..|+..
T Consensus 127 dl~p~nill~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~ 205 (298)
T cd07841 127 DLKPNNLLIASDGVLKLADFGLARSFGSPN-RKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPG 205 (298)
T ss_pred CCChhhEEEcCCCCEEEccceeeeeccCCC-ccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccC
Confidence 999999999999999999999998754321 11223345678999997644 4578899999999999999999765431
Q ss_pred --C------------------cc---------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 --K------------------FE---------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 --~------------------~~---------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. |. . .+++.+|+..+|++|||++||+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l 280 (298)
T cd07841 206 DSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQAL 280 (298)
T ss_pred CccHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHh
Confidence 0 00 0 0589999999999999999975
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is |
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-15 Score=155.82 Aligned_cols=107 Identities=22% Similarity=0.420 Sum_probs=83.4
Q ss_pred eeccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-----CCCCchhhHHHHHHHHHHHHh
Q 046589 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-----RKANERDNIYRFGVVLLELVI 696 (729)
Q Consensus 622 vk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-----~~~~~~~Dv~s~G~vl~el~t 696 (729)
+|+|++|+||+++.++.++++|||++....... .......++..|+|||.... ..++.++|||||||+++|++|
T Consensus 135 ~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~ 213 (275)
T cd06608 135 IHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTL-GRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELAD 213 (275)
T ss_pred ccCCCCHHHEEEccCCeEEECCCccceecccch-hhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHh
Confidence 334999999999999999999999887654211 11223456788999997542 346788999999999999999
Q ss_pred CCCCCCCC----------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 697 RKQPTGPK----------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 697 g~~p~~~~----------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.|+... |.+ .+++.+|+..+|++|||+++++
T Consensus 214 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll 270 (275)
T cd06608 214 GKPPLCDMHPMRALFKIPRNPPPTLKSPENWSKKFNDFISECLIKNYEQRPFMEELL 270 (275)
T ss_pred CCCCccccchHHHHHHhhccCCCCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHh
Confidence 99997520 111 1799999999999999999874
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-15 Score=156.83 Aligned_cols=95 Identities=20% Similarity=0.327 Sum_probs=79.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|++|.||+++.++.+|++|||+++..... .....++..|+|||.......+.++||||||+++|||+||+.|+..
T Consensus 126 dl~p~nili~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 201 (290)
T cd05580 126 DLKPENLLLDSDGYIKITDFGFAKRVKGR----TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDD 201 (290)
T ss_pred CCCHHHEEECCCCCEEEeeCCCccccCCC----CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999998876432 2234567889999988777788999999999999999999999753
Q ss_pred Ccc------------------h--HHHHhhcccCCCCCCC
Q 046589 704 KFE------------------D--KDIVVGCVSDNPIAKP 723 (729)
Q Consensus 704 ~~~------------------~--~~l~~~c~~~~p~~Rp 723 (729)
... . .+++.+|+..+|.+||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~ 241 (290)
T cd05580 202 NPIQIYEKILEGKVRFPSFFSPDAKDLIRNLLQVDLTKRL 241 (290)
T ss_pred CHHHHHHHHhcCCccCCccCCHHHHHHHHHHccCCHHHcc
Confidence 111 0 1799999999999999
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-15 Score=155.03 Aligned_cols=101 Identities=22% Similarity=0.353 Sum_probs=81.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|++|.||+++.++.++++|||++..... ........++..|+|||+..+..++.++||||+||+++|+++|+.|+..
T Consensus 120 di~p~Nil~~~~~~~~l~dfg~~~~~~~--~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 197 (277)
T cd05577 120 DLKPENVLLDDHGNVRISDLGLAVELKG--GKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQR 197 (277)
T ss_pred CCCHHHEEECCCCCEEEccCcchhhhcc--CCccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCC
Confidence 9999999999999999999999876542 1112234566789999988777788999999999999999999999753
Q ss_pred Cc----------------------ch--HHHHhhcccCCCCCCCCccc
Q 046589 704 KF----------------------ED--KDIVVGCVSDNPIAKPGMLR 727 (729)
Q Consensus 704 ~~----------------------~~--~~l~~~c~~~~p~~Rp~~~~ 727 (729)
.. .. .+++.+|++.+|++||++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~ 245 (277)
T cd05577 198 KEKVEKEELKRRTLEMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRG 245 (277)
T ss_pred cccccHHHHHhccccccccCCccCCHHHHHHHHHHccCChhHccCCCc
Confidence 11 00 17999999999999996655
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of |
| >cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-15 Score=153.43 Aligned_cols=103 Identities=19% Similarity=0.320 Sum_probs=80.2
Q ss_pred eeccccccceEecCCc-------cEEEeecCCccccCCCCCcceecccccccccCccccCCC--CCCchhhHHHHHHHHH
Q 046589 622 VKKDIKASNILLNEDF-------DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR--KANERDNIYRFGVVLL 692 (729)
Q Consensus 622 vk~dlk~~nill~~~~-------~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~--~~~~~~Dv~s~G~vl~ 692 (729)
+|+|+||+||+++.++ .++++|||+++.... .....++..|+|||+.... .++.++|||||||++|
T Consensus 123 ~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~ 197 (259)
T cd05037 123 VHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLS-----REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLL 197 (259)
T ss_pred ecccCccceEEEecCccccCCceeEEeCCCCccccccc-----ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHH
Confidence 4449999999999877 799999999876532 1123455679999987655 7889999999999999
Q ss_pred HHHhC-CCCCCCC-cc-------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 693 ELVIR-KQPTGPK-FE-------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 693 el~tg-~~p~~~~-~~-------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+++| ..|+... .. -.+++.+|+..+|++|||+.+|+
T Consensus 198 ~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il 255 (259)
T cd05037 198 EICSNGEEPLSTLSSSEKERFYQDQHRLPMPDCAELANLINQCWTYDPTKRPSFRAIL 255 (259)
T ss_pred HHHhCCCCCcccCCchhHHHHHhcCCCCCCCCchHHHHHHHHHhccChhhCCCHHHHH
Confidence 99995 5554310 00 01799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki |
| >cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-15 Score=153.11 Aligned_cols=101 Identities=21% Similarity=0.393 Sum_probs=81.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-------cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-------HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIR 697 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-------~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg 697 (729)
|++|+||+++.++.++++|||++........ .......++..|+|||.......+.++|||||||++||++||
T Consensus 118 di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g 197 (265)
T cd05579 118 DLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVG 197 (265)
T ss_pred CCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhC
Confidence 9999999999999999999999876542211 012234566789999988777788999999999999999999
Q ss_pred CCCCCCC---------------c------ch--HHHHhhcccCCCCCCCCc
Q 046589 698 KQPTGPK---------------F------ED--KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 698 ~~p~~~~---------------~------~~--~~l~~~c~~~~p~~Rp~~ 725 (729)
+.|+... | .. .+++..|++.+|++|||+
T Consensus 198 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~ 248 (265)
T cd05579 198 IPPFHGETPEEIFQNILNGKIEWPEDVEVSDEAIDLISKLLVPDPEKRLGA 248 (265)
T ss_pred CCCCCCCCHHHHHHHHhcCCcCCCccccCCHHHHHHHHHHhcCCHhhcCCC
Confidence 9997521 1 11 179999999999999999
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re |
| >cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-15 Score=159.50 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=59.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc------ceecccccccccCccccCC--CCCCchhhHHHHHHHHHHHHh
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH------ISTDVASAISYVPPEYGRA--RKANERDNIYRFGVVLLELVI 696 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~------~~~~~~~~~~y~ape~~~~--~~~~~~~Dv~s~G~vl~el~t 696 (729)
|+||+||+++.++.++++||+.+......... ......++..|+|||+... ..++.++|||||||++||++|
T Consensus 126 dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~ 205 (327)
T cd08227 126 SVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELAN 205 (327)
T ss_pred CCChhhEEEecCCcEEEcccchhhccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHH
Confidence 99999999999999999999854432211100 0111245667999998754 458899999999999999999
Q ss_pred CCCCCC
Q 046589 697 RKQPTG 702 (729)
Q Consensus 697 g~~p~~ 702 (729)
|+.|+.
T Consensus 206 g~~pf~ 211 (327)
T cd08227 206 GHVPFK 211 (327)
T ss_pred CCCCCC
Confidence 999974
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype |
| >cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.8e-15 Score=158.94 Aligned_cols=105 Identities=26% Similarity=0.330 Sum_probs=84.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC--cceecccccccccCccccCCC-CCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS--HISTDVASAISYVPPEYGRAR-KANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~--~~~~~~~~~~~y~ape~~~~~-~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||.||+++.++.++++|||++........ .......++.+|+|||..... .++.++||||+||++|||+||+.|+
T Consensus 128 dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf 207 (330)
T cd07834 128 DLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLF 207 (330)
T ss_pred CCCHHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCc
Confidence 9999999999999999999999987653221 112234567889999988766 7889999999999999999999887
Q ss_pred CC-C-------------------c-----------------------c-------h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP-K-------------------F-----------------------E-------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~-~-------------------~-----------------------~-------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . | . . .+++.+||+.+|++||++++++
T Consensus 208 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll 287 (330)
T cd07834 208 PGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEAL 287 (330)
T ss_pred CCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHH
Confidence 41 0 0 0 0 1689999999999999999874
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and |
| >cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-15 Score=155.41 Aligned_cols=100 Identities=20% Similarity=0.305 Sum_probs=76.7
Q ss_pred cccccceEecCCc-------cEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHH-
Q 046589 625 DIKASNILLNEDF-------DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELV- 695 (729)
Q Consensus 625 dlk~~nill~~~~-------~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~- 695 (729)
|+||+||+++..+ .++++|||++...... ....++..|+|||.... ..++.++|||||||++||++
T Consensus 142 dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~-----~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~ 216 (274)
T cd05076 142 NVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSR-----EERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICF 216 (274)
T ss_pred CCCcccEEEeccCcccCccceeeecCCccccccccc-----cccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHh
Confidence 9999999997543 4799999987653321 12345678999997754 56789999999999999985
Q ss_pred hCCCCCCCCcc--------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 696 IRKQPTGPKFE--------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 696 tg~~p~~~~~~--------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+|+.|+..... -.+++.+||+.+|++||||++|+
T Consensus 217 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~il 270 (274)
T cd05076 217 DGEVPLKERTPSEKERFYEKKHRLPEPSCKELATLISQCLTYEPTQRPSFRTIL 270 (274)
T ss_pred CCCCCccccChHHHHHHHHhccCCCCCCChHHHHHHHHHcccChhhCcCHHHHH
Confidence 68887652100 01799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt |
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-15 Score=164.27 Aligned_cols=109 Identities=23% Similarity=0.419 Sum_probs=86.5
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~ 698 (729)
+||+|+||.||+++.+..+|++|||+++......... .....++..|+|||......++.++|||||||++|||+| |.
T Consensus 235 ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~ 314 (375)
T cd05104 235 CIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGS 314 (375)
T ss_pred eeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999998654322111 112334567999999888889999999999999999998 77
Q ss_pred CCCCC-Cc-------------------ch---HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGP-KF-------------------ED---KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~-~~-------------------~~---~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+.. .. .. .+++.+||+.+|++||+|.+|+
T Consensus 315 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil 368 (375)
T cd05104 315 SPYPGMPVDSKFYKMIKEGYRMLSPECAPSEMYDIMKSCWDADPLKRPTFKQIV 368 (375)
T ss_pred CCCCCCCchHHHHHHHHhCccCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHH
Confidence 77642 10 00 1899999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-15 Score=158.42 Aligned_cols=80 Identities=28% Similarity=0.316 Sum_probs=63.4
Q ss_pred eccccccceEecC----CccEEEeecCCccccCCCCC--cceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHH
Q 046589 623 KKDIKASNILLNE----DFDAKVLDFGLARLISDCKS--HISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELV 695 (729)
Q Consensus 623 k~dlk~~nill~~----~~~~kl~dfgl~~~~~~~~~--~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~ 695 (729)
|+|+||+||+++. ++.+|++|||+++....... .......++.+|+|||...+ ..++.++|||||||+++||+
T Consensus 131 h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~ 210 (316)
T cd07842 131 HRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELL 210 (316)
T ss_pred eCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 3399999999999 89999999999887543221 11223466788999997654 45788999999999999999
Q ss_pred hCCCCCC
Q 046589 696 IRKQPTG 702 (729)
Q Consensus 696 tg~~p~~ 702 (729)
+|+.|+.
T Consensus 211 ~~~~~~~ 217 (316)
T cd07842 211 TLEPIFK 217 (316)
T ss_pred hcCCCCc
Confidence 9998875
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85 | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-15 Score=154.78 Aligned_cols=104 Identities=21% Similarity=0.283 Sum_probs=81.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||++++++.++++|||+++...... .......++.+|+|||.... ..++.++|||||||++||++||+.|+..
T Consensus 125 dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~ 203 (284)
T cd07836 125 DLKPQNLLINKRGELKLADFGLARAFGIPV-NTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPG 203 (284)
T ss_pred CCCHHHEEECCCCcEEEeecchhhhhcCCc-cccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999987653211 11223345778999997654 4568899999999999999999988642
Q ss_pred -Ccc-------------------------------------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 -KFE-------------------------------------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~~-------------------------------------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.+. -.+++.+|++.+|++||++++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l 279 (284)
T cd07836 204 TNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDAL 279 (284)
T ss_pred CCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHh
Confidence 100 01688999999999999999874
|
Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. |
| >cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-15 Score=155.96 Aligned_cols=100 Identities=25% Similarity=0.443 Sum_probs=78.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC--CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA--RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~--~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|++|+||+++.++.++++|||+++..............++..|+|||.... ..++.++|||||||++||++||+.|+.
T Consensus 130 dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~ 209 (290)
T cd05613 130 DIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFT 209 (290)
T ss_pred CCCHHHeEECCCCCEEEeeCccceecccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999998754322222223457789999998754 346788999999999999999999974
Q ss_pred CC-------------------cc------hHHHHhhcccCCCCCCCC
Q 046589 703 PK-------------------FE------DKDIVVGCVSDNPIAKPG 724 (729)
Q Consensus 703 ~~-------------------~~------~~~l~~~c~~~~p~~Rp~ 724 (729)
.. +. -.+++.+|++.+|++||+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~p~~R~~ 256 (290)
T cd05613 210 VDGEKNSQAEISRRILKSEPPYPQEMSALAKDIIQRLLMKDPKKRLG 256 (290)
T ss_pred cCCccccHHHHHHHhhccCCCCCccCCHHHHHHHHHHhcCCHHHhcC
Confidence 10 00 017899999999999984
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1 | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.7e-15 Score=158.42 Aligned_cols=105 Identities=27% Similarity=0.361 Sum_probs=82.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc---ceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH---ISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~---~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++.++++|||+++........ ......++..|+|||...+ ..++.++||||+||++||+++|+.|
T Consensus 130 dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~p 209 (332)
T cd07857 130 DLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPV 209 (332)
T ss_pred CCCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcC
Confidence 99999999999999999999999865422111 1123467888999997654 5678999999999999999999988
Q ss_pred CCCCc-------------------------------------------c---------hHHHHhhcccCCCCCCCCcccc
Q 046589 701 TGPKF-------------------------------------------E---------DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 701 ~~~~~-------------------------------------------~---------~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
+...- . -.+++.+|+..+|++|||++++
T Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~l 289 (332)
T cd07857 210 FKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEA 289 (332)
T ss_pred CCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHH
Confidence 64210 0 0178999999999999999886
Q ss_pred C
Q 046589 729 Q 729 (729)
Q Consensus 729 ~ 729 (729)
+
T Consensus 290 l 290 (332)
T cd07857 290 L 290 (332)
T ss_pred h
Confidence 4
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co |
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-15 Score=161.76 Aligned_cols=106 Identities=22% Similarity=0.326 Sum_probs=90.7
Q ss_pred ceeeeccccccceEe-cCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhC
Q 046589 619 TVAVKKDIKASNILL-NEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIR 697 (729)
Q Consensus 619 ~~avk~dlk~~nill-~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg 697 (729)
.-+||||+||+|||+ ++.++.+++|||.++..... ..+.+-|..|.|||......+++.+|+||+|+++|||++|
T Consensus 434 ~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~----~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G 509 (612)
T KOG0603|consen 434 QGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS----CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTG 509 (612)
T ss_pred cCeeecCCChhheeecCCCCcEEEEEechhhhCchh----hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhC
Confidence 558999999999999 58899999999999886643 2244667889999999999999999999999999999999
Q ss_pred CCCCCC-----------------Ccc---hHHHHhhcccCCCCCCCCcccc
Q 046589 698 KQPTGP-----------------KFE---DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 698 ~~p~~~-----------------~~~---~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
+.|+.. .++ .++++.+|++.+|.+||+|+++
T Consensus 510 ~tp~~~~P~~~ei~~~i~~~~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i 560 (612)
T KOG0603|consen 510 RTLFAAHPAGIEIHTRIQMPKFSECVSDEAKDLLQQLLQVDPALRLGADEI 560 (612)
T ss_pred CCccccCCchHHHHHhhcCCccccccCHHHHHHHHHhccCChhhCcChhhh
Confidence 999862 111 1289999999999999999986
|
|
| >cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-15 Score=152.16 Aligned_cols=98 Identities=26% Similarity=0.435 Sum_probs=81.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++++||+++.++.++++|||+++...... ......++..|+|||......++.++|+||+||++||+++|+.|+...
T Consensus 118 dl~~~nilv~~~~~~~l~df~~~~~~~~~~--~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 195 (262)
T cd05572 118 DLKPENLLLDSNGYVKLVDFGFAKKLKSGQ--KTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGED 195 (262)
T ss_pred CCCHHHEEEcCCCCEEEeeCCcccccCccc--ccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCC
Confidence 999999999999999999999988765321 112335677899999887778899999999999999999999998642
Q ss_pred c--c---------------------h--HHHHhhcccCCCCCCCC
Q 046589 705 F--E---------------------D--KDIVVGCVSDNPIAKPG 724 (729)
Q Consensus 705 ~--~---------------------~--~~l~~~c~~~~p~~Rp~ 724 (729)
. . + .+++..||+.+|++||+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~ 240 (262)
T cd05572 196 DEDPMEIYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLG 240 (262)
T ss_pred CCCHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHccCChhhCcC
Confidence 2 0 0 17999999999999999
|
Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi |
| >cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4 | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-15 Score=153.54 Aligned_cols=105 Identities=17% Similarity=0.325 Sum_probs=82.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||.||+++.++.++++|||+++..............++..|+|||......++.++|||||||++||+++ |..|+..
T Consensus 142 dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~ 221 (275)
T cd05046 142 DLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYG 221 (275)
T ss_pred cCccceEEEeCCCcEEEcccccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence 999999999999999999999987543222212223345667999998877778899999999999999999 6666631
Q ss_pred ---------------Ccch--------HHHHhhcccCCCCCCCCccccC
Q 046589 704 ---------------KFED--------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ---------------~~~~--------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|.. .+++.+|++.+|++|||+.+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l 270 (275)
T cd05046 222 LSDEEVLNRLQAGKLELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELV 270 (275)
T ss_pred cchHHHHHHHHcCCcCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHH
Confidence 1210 1899999999999999999863
|
Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s |
| >cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-15 Score=150.93 Aligned_cols=104 Identities=27% Similarity=0.422 Sum_probs=84.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|++|+||+++.++.++++|||++........ ......++..|+|||......++.++||||+|++++|+++|+.|+..
T Consensus 124 dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~ 202 (254)
T cd06627 124 DIKAANILTTKDGVVKLADFGVATKLNDVSK-DDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDL 202 (254)
T ss_pred CCCHHHEEECCCCCEEEeccccceecCCCcc-cccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999999987653221 12234567889999987777788999999999999999999999752
Q ss_pred Cc-----c----------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KF-----E----------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~-----~----------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . -.+++.+|+..+|++|||+++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l 249 (254)
T cd06627 203 NPMAALFRIVQDDHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLL 249 (254)
T ss_pred cHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHh
Confidence 10 0 01799999999999999999874
|
Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast |
| >cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1 | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.5e-15 Score=156.96 Aligned_cols=101 Identities=29% Similarity=0.360 Sum_probs=81.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|.||+++.++.++++|||+++..... .....++..|+|||...+ ..++.++|||||||++||++||+.|+..
T Consensus 133 dl~p~Nili~~~~~~~l~dfg~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~ 208 (328)
T cd07856 133 DLKPSNILINENCDLKICDFGLARIQDPQ----MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPG 208 (328)
T ss_pred CCCHHHEeECCCCCEEeCccccccccCCC----cCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999998754321 123345678999997654 5678999999999999999999988632
Q ss_pred C--------------------------------------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K--------------------------------------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~--------------------------------------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ..+ .+++.+|++.+|++|||+++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell 286 (328)
T cd07856 209 KDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEAL 286 (328)
T ss_pred CCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHh
Confidence 0 000 1799999999999999999874
|
Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U |
| >cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-15 Score=151.19 Aligned_cols=104 Identities=26% Similarity=0.478 Sum_probs=84.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++++||+++.++.++++|||.+....... .......++..|+|||......++.++||||+|++++++++|+.|+...
T Consensus 128 dl~~~nil~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~ 206 (258)
T cd08215 128 DIKPQNIFLTSNGLVKLGDFGISKVLSSTV-DLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGE 206 (258)
T ss_pred cCChHHeEEcCCCcEEECCccceeecccCc-ceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCC
Confidence 899999999999999999999987754322 1122345677899999887778889999999999999999999997531
Q ss_pred c--------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 705 F--------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~--------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... +++.+|+..+|++|||+++++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll 253 (258)
T cd08215 207 NLLELALKILKGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQIL 253 (258)
T ss_pred cHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence 0 011 799999999999999999874
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They |
| >KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.1e-16 Score=157.98 Aligned_cols=102 Identities=24% Similarity=0.437 Sum_probs=78.3
Q ss_pred cccccceEec---CCccEEEeecCCccccCCCCCc------ceecccccccccCccccCCC----CCCchhhHHHHHHHH
Q 046589 625 DIKASNILLN---EDFDAKVLDFGLARLISDCKSH------ISTDVASAISYVPPEYGRAR----KANERDNIYRFGVVL 691 (729)
Q Consensus 625 dlk~~nill~---~~~~~kl~dfgl~~~~~~~~~~------~~~~~~~~~~y~ape~~~~~----~~~~~~Dv~s~G~vl 691 (729)
|+||.|||+- ..|..||+|||+++++..+... .....+||+||.+||.+.-. .++.|+||||.|||+
T Consensus 595 DLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIF 674 (775)
T KOG1151|consen 595 DLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIF 674 (775)
T ss_pred ccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhh
Confidence 9999999995 4478899999999998754332 12245899999999966533 568999999999999
Q ss_pred HHHHhCCCCCCCCcc---------------------------hHHHHhhcccCCCCCCCCcc
Q 046589 692 LELVIRKQPTGPKFE---------------------------DKDIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 692 ~el~tg~~p~~~~~~---------------------------~~~l~~~c~~~~p~~Rp~~~ 726 (729)
|..+.|++||.-... ..+++.+|++.--++|-+..
T Consensus 675 yQClYGrKPFGhnqsQQdILqeNTIlkAtEVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~ 736 (775)
T KOG1151|consen 675 YQCLYGRKPFGHNQSQQDILQENTILKATEVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQ 736 (775)
T ss_pred hhhhccCCCCCCchhHHHHHhhhchhcceeccCCCCCccCHHHHHHHHHHHHhhhhhhhhHH
Confidence 999999999872111 11788889887666665543
|
|
| >KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-15 Score=172.33 Aligned_cols=108 Identities=23% Similarity=0.423 Sum_probs=88.4
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcceeccc--ccccccCccccCCCCCCchhhHHHHHHHHHHHHhCC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVA--SAISYVPPEYGRARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~--~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
.||||+.++||++..+..+||+|||+|+.............. .+..|||||.+....|+.|+|||||||++||+.|..
T Consensus 439 ~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG 518 (609)
T KOG0200|consen 439 CVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLG 518 (609)
T ss_pred ccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCC
Confidence 799999999999999999999999999976543333222222 456799999988899999999999999999999977
Q ss_pred CCCCCCcc--hH----------------------HHHhhcccCCCCCCCCcccc
Q 046589 699 QPTGPKFE--DK----------------------DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 699 ~p~~~~~~--~~----------------------~l~~~c~~~~p~~Rp~~~~v 728 (729)
.++++.+. .+ ++|..||..+|++||++.+.
T Consensus 519 ~~PYp~~~~~~~l~~~l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~ 572 (609)
T KOG0200|consen 519 GTPYPGIPPTEELLEFLKEGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSEC 572 (609)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHH
Confidence 77665432 10 68999999999999999875
|
|
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-15 Score=146.68 Aligned_cols=99 Identities=25% Similarity=0.427 Sum_probs=82.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+|-+|.++|.+|+.||+|||+++..-..+. .+.+.+||+-|.|||.+....|...+|+|..|||||||++|+.||+-.
T Consensus 293 DlKLENLlLDkDGHIKitDFGLCKE~I~~g~-t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~ 371 (516)
T KOG0690|consen 293 DLKLENLLLDKDGHIKITDFGLCKEEIKYGD-TTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNK 371 (516)
T ss_pred echhhhheeccCCceEeeecccchhcccccc-eeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCccccc
Confidence 9999999999999999999999987443222 344678999999999999999999999999999999999999998721
Q ss_pred ---------------cc------hHHHHhhcccCCCCCCCC
Q 046589 705 ---------------FE------DKDIVVGCVSDNPIAKPG 724 (729)
Q Consensus 705 ---------------~~------~~~l~~~c~~~~p~~Rp~ 724 (729)
+. ...+...-+..+|.+|-.
T Consensus 372 dh~kLFeLIl~ed~kFPr~ls~eAktLLsGLL~kdP~kRLG 412 (516)
T KOG0690|consen 372 DHEKLFELILMEDLKFPRTLSPEAKTLLSGLLKKDPKKRLG 412 (516)
T ss_pred chhHHHHHHHhhhccCCccCCHHHHHHHHHHhhcChHhhcC
Confidence 11 115777788888888864
|
|
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.7e-15 Score=151.62 Aligned_cols=100 Identities=22% Similarity=0.299 Sum_probs=82.0
Q ss_pred cccccceEecCCc-cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDF-DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~-~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||+++.++ .++++|||+++..... ....++..|+|||......++.++||||+||++||++||+.|+..
T Consensus 134 dl~p~nil~~~~~~~~~l~dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~ 208 (267)
T PHA03390 134 DIKLENVLYDRAKDRIYLCDYGLCKIIGTP-----SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKE 208 (267)
T ss_pred CCCHHHEEEeCCCCeEEEecCccceecCCC-----ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence 9999999999888 9999999988765421 123567889999998878889999999999999999999999752
Q ss_pred C-cc----------------------h--HHHHhhcccCCCCCCCC-ccccC
Q 046589 704 K-FE----------------------D--KDIVVGCVSDNPIAKPG-MLRVQ 729 (729)
Q Consensus 704 ~-~~----------------------~--~~l~~~c~~~~p~~Rp~-~~~v~ 729 (729)
. .. . .+++.+|++.+|..||+ +++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l 260 (267)
T PHA03390 209 DEDEELDLESLLKRQQKKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEII 260 (267)
T ss_pred CCcchhhHHHHHHhhcccCCcccccCHHHHHHHHHHhccChhhCCchHHHHh
Confidence 1 00 0 07899999999999996 67763
|
|
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-16 Score=146.38 Aligned_cols=103 Identities=23% Similarity=0.351 Sum_probs=89.1
Q ss_pred cccccceEec---CCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLN---EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~---~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+|+++. ...-+|++|||+|.... +...+.+.+||++|||||.....+|+..+|||+.|||+|-|+.|+.||
T Consensus 135 DvkP~nllLASK~~~A~vKL~~FGvAi~l~--~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF 212 (355)
T KOG0033|consen 135 DLKPENLLLASKAKGAAVKLADFGLAIEVN--DGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPF 212 (355)
T ss_pred cCChhheeeeeccCCCceeecccceEEEeC--CccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCC
Confidence 9999999996 34578999999999877 345667889999999999999999999999999999999999999998
Q ss_pred CC--------------------Ccc-----hHHHHhhcccCCCCCCCCccccC
Q 046589 702 GP--------------------KFE-----DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~--------------------~~~-----~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+. .|. .++++.+++-.+|..|-|+.|.+
T Consensus 213 ~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL 265 (355)
T KOG0033|consen 213 WDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEAL 265 (355)
T ss_pred CCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHh
Confidence 73 232 12899999999999999998753
|
|
| >cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1 | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.5e-15 Score=151.14 Aligned_cols=105 Identities=21% Similarity=0.427 Sum_probs=82.8
Q ss_pred cccccceEecCCc-cEEEeecCCccccCCCCCc---ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDF-DAKVLDFGLARLISDCKSH---ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~-~~kl~dfgl~~~~~~~~~~---~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|++|.||+++.++ .++++|||.+......... ......++..|+|||......++.++||||+||+++|+++|+.|
T Consensus 128 ~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p 207 (268)
T cd06630 128 DVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPP 207 (268)
T ss_pred CCCHHHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCC
Confidence 9999999998765 6899999998776532111 11124567899999988777888999999999999999999999
Q ss_pred CCC-Ccc-----------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 701 TGP-KFE-----------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~-~~~-----------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+.. ... .+ +++.+|+..+|++||++.+++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll 262 (268)
T cd06630 208 WNAEKHSNHLALIFKIASATTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELL 262 (268)
T ss_pred CCCCCCcchHHHHHHHhccCCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHh
Confidence 752 110 00 688999999999999999874
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their |
| >cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-15 Score=158.27 Aligned_cols=101 Identities=29% Similarity=0.338 Sum_probs=81.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|+||+++.++.++++|||++...... .....++..|+|||.... ..++.++||||+||++||++||+.|+..
T Consensus 143 dlkp~Nill~~~~~~kL~dfg~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~ 218 (343)
T cd07851 143 DLKPSNIAVNEDCELKILDFGLARHTDDE----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPG 218 (343)
T ss_pred CCCHHHeEECCCCCEEEcccccccccccc----ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999998765421 223456778999997654 3678899999999999999999998741
Q ss_pred Cc--------------------------------------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KF--------------------------------------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--------------------------------------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .+ .+++.+|+..+|++|||+++|+
T Consensus 219 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell 296 (343)
T cd07851 219 SDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEAL 296 (343)
T ss_pred CChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHh
Confidence 00 00 1689999999999999999874
|
Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK |
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.1e-16 Score=175.95 Aligned_cols=104 Identities=25% Similarity=0.337 Sum_probs=82.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCC---CcceecccccccccCccccCCC---CCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCK---SHISTDVASAISYVPPEYGRAR---KANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~---~~~~~~~~~~~~y~ape~~~~~---~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||.||+|+.++..|++|||.|+...... +.......||..|||||.+.+. .-.-.+||||+|||+.||+||+
T Consensus 1359 DIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGk 1438 (1509)
T KOG4645|consen 1359 DIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGK 1438 (1509)
T ss_pred CCCccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCC
Confidence 999999999999999999999998765432 1112356899999999976542 2355689999999999999999
Q ss_pred CCCCC---CcchH--------------------HHHhhcccCCCCCCCCcccc
Q 046589 699 QPTGP---KFEDK--------------------DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 699 ~p~~~---~~~~~--------------------~l~~~c~~~~p~~Rp~~~~v 728 (729)
+|+.- .|.=+ +++..|+..||..|.++.|+
T Consensus 1439 rPW~~~dne~aIMy~V~~gh~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~ql 1491 (1509)
T KOG4645|consen 1439 RPWAELDNEWAIMYHVAAGHKPQIPERLSSEGRDFLEHCLEQDPKMRWTASQL 1491 (1509)
T ss_pred CchhhccchhHHHhHHhccCCCCCchhhhHhHHHHHHHHHhcCchhhhHHHHH
Confidence 99652 33311 89999999999999888654
|
|
| >KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.9e-15 Score=132.45 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=63.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||.|.++..+++.|++|||+|+.+.- ..........|.||.+|..+.+ .-|++..|+||.|||+.|+....+|..
T Consensus 126 dlkpqnllin~ngelkladfglarafgi-pvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplf 203 (292)
T KOG0662|consen 126 DLKPQNLLINRNGELKLADFGLARAFGI-PVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF 203 (292)
T ss_pred cCCcceEEeccCCcEEecccchhhhcCC-ceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCC
Confidence 9999999999999999999999997642 1223445677899999997665 567999999999999999987666744
|
|
| >cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1 | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.5e-15 Score=151.18 Aligned_cols=102 Identities=23% Similarity=0.324 Sum_probs=84.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|++|+||++++++.++++|||++....... ......++..|+|||......++.++|+||+||++|++++|+.|+..
T Consensus 125 dl~~~nil~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~ 202 (258)
T cd05578 125 DIKPDNILLDEQGHVHITDFNIATKVTPDT--LTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGH 202 (258)
T ss_pred CCCHHHeEEcCCCCEEEeecccccccCCCc--cccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999887654321 12234567789999988777789999999999999999999999763
Q ss_pred Cc---------------------chH--HHHhhcccCCCCCCCCc--ccc
Q 046589 704 KF---------------------EDK--DIVVGCVSDNPIAKPGM--LRV 728 (729)
Q Consensus 704 ~~---------------------~~~--~l~~~c~~~~p~~Rp~~--~~v 728 (729)
.. ... +++.+|+..+|.+||++ +|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l 252 (258)
T cd05578 203 SRTIRDQIRAKQETADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDL 252 (258)
T ss_pred CccHHHHHHHHhccccccCcccCcHHHHHHHHHHccCChhHcCCccHHHH
Confidence 21 111 79999999999999999 765
|
Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. |
| >smart00750 KIND kinase non-catalytic C-lobe domain | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.7e-15 Score=143.54 Aligned_cols=95 Identities=22% Similarity=0.260 Sum_probs=79.4
Q ss_pred cccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC--C
Q 046589 627 KASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP--K 704 (729)
Q Consensus 627 k~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~--~ 704 (729)
||+||+++.++.+++ ||+++..... ...++..|+|||...+..++.++|||||||++|||+||+.|+.. .
T Consensus 38 kp~Nil~~~~~~~~~--fG~~~~~~~~------~~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~ 109 (176)
T smart00750 38 KSGNILLTWDGLLKL--DGSVAFKTPE------QSRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERE 109 (176)
T ss_pred CcccEeEcCccceee--ccceEeeccc------cCCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccch
Confidence 999999999999998 9998875431 12567899999999888899999999999999999999999752 0
Q ss_pred c-----------------------------chHHHHhhcccCCCCCCCCccccC
Q 046589 705 F-----------------------------EDKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~-----------------------------~~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .-.+++.+|+..+|++||++.+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll 163 (176)
T smart00750 110 LSAILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQRREAANHYL 163 (176)
T ss_pred hcHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHH
Confidence 0 011689999999999999999863
|
It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features |
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-15 Score=146.21 Aligned_cols=99 Identities=19% Similarity=0.414 Sum_probs=82.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+|-.|+|+|..++.|++|||+++.--..++ .+.+.+||+.|+|||.+.+..|...+|+|++||+|.||+.|+.||+.
T Consensus 376 dlkldnvlldaeghikltdygmcke~l~~gd-~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdiv 454 (593)
T KOG0695|consen 376 DLKLDNVLLDAEGHIKLTDYGMCKEGLGPGD-TTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIV 454 (593)
T ss_pred eccccceEEccCCceeecccchhhcCCCCCc-ccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCccee
Confidence 9999999999999999999999987544333 23467899999999999999999999999999999999999999984
Q ss_pred Ccch------H----------------------HHHhhcccCCCCCCCC
Q 046589 704 KFED------K----------------------DIVVGCVSDNPIAKPG 724 (729)
Q Consensus 704 ~~~~------~----------------------~l~~~c~~~~p~~Rp~ 724 (729)
.+.. + .+....+..+|.+|-.
T Consensus 455 gm~n~d~ntedylfqvilekqiriprslsvkas~vlkgflnkdp~erlg 503 (593)
T KOG0695|consen 455 GMDNPDMNTEDYLFQVILEKQIRIPRSLSVKASHVLKGFLNKDPKERLG 503 (593)
T ss_pred cCCCcccchhHHHHHHHhhhcccccceeehhhHHHHHHhhcCCcHHhcC
Confidence 2221 1 4677788888888754
|
|
| >cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=148.89 Aligned_cols=105 Identities=26% Similarity=0.414 Sum_probs=85.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|++|.||+++.++.++++|||.+......... ......++..|+|||.......+.++|||||||+++|+++|+.|+..
T Consensus 126 dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~ 205 (260)
T cd06606 126 DIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSE 205 (260)
T ss_pred CCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999998876532211 12234667789999988877789999999999999999999999753
Q ss_pred Cc----------------------c--hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KF----------------------E--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~----------------------~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.- . ..+++.+|+..+|++||++.+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll 255 (260)
T cd06606 206 LGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELL 255 (260)
T ss_pred CCchHHHHHhccccCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHh
Confidence 10 0 01799999999999999999874
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK |
| >cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-14 Score=149.29 Aligned_cols=103 Identities=19% Similarity=0.291 Sum_probs=80.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCC--CcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCK--SHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~--~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|++|+||+++.++.++++|||+++...... ........++..|+|||......++.++|||||||+++|+++|+.|+.
T Consensus 131 dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~ 210 (264)
T cd06653 131 DIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWA 210 (264)
T ss_pred CCCHHHEEEcCCCCEEECccccccccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999987643211 111123457788999998877778899999999999999999999975
Q ss_pred CC--cc-------------------h--HHHHhhcccCCCCCCCCcccc
Q 046589 703 PK--FE-------------------D--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 703 ~~--~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.. +. + .+++..|+. .|..||+..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~ 258 (264)
T cd06653 211 EYEAMAAIFKIATQPTKPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFL 258 (264)
T ss_pred ccCHHHHHHHHHcCCCCCCCCcccCHHHHHHHHHHhc-CcccCccHHHH
Confidence 21 00 0 178899999 47999998875
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho |
| >cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-14 Score=156.71 Aligned_cols=101 Identities=26% Similarity=0.316 Sum_probs=81.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++.... ......++..|+|||.... ..++.++|||||||++||+++|+.|+..
T Consensus 145 dlkp~NIll~~~~~~kl~dfg~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~ 220 (345)
T cd07877 145 DLKPSNLAVNEDCELKILDFGLARHTDD----EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPG 220 (345)
T ss_pred CCChHHEEEcCCCCEEEecccccccccc----cccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999876432 1223456788999997654 5678899999999999999999998741
Q ss_pred Cc--------------------------------------------------c--hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KF--------------------------------------------------E--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--------------------------------------------------~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.- . ..+++..|+..+|.+||++.+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l 298 (345)
T cd07877 221 TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQAL 298 (345)
T ss_pred CCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHh
Confidence 00 0 01688899999999999998874
|
Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14 |
| >cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-14 Score=150.59 Aligned_cols=104 Identities=24% Similarity=0.304 Sum_probs=82.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC-CCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR-KANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~-~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+++.||+++.++.++++|||+++....... .......+..|+|||..... .++.++|||||||++||+++|+.|+..
T Consensus 123 ~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~ 201 (282)
T cd07829 123 DLKPQNILINRDGVLKLADFGLARAFGIPLR-TYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPG 201 (282)
T ss_pred CCChheEEEcCCCCEEEecCCcccccCCCcc-ccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999887543221 12233446789999987655 778899999999999999999887642
Q ss_pred C--------------------c----------------------------c--hHHHHhhcccCCCCCCCCccccC
Q 046589 704 K--------------------F----------------------------E--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~--------------------~----------------------------~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. | . -.+++..|+..+|++||++++|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l 277 (282)
T cd07829 202 DSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEAL 277 (282)
T ss_pred ccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHh
Confidence 1 0 0 01689999999999999999874
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the |
| >PTZ00024 cyclin-dependent protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=154.75 Aligned_cols=105 Identities=23% Similarity=0.291 Sum_probs=81.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCC-------------CcceecccccccccCccccCC-CCCCchhhHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCK-------------SHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVV 690 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~-------------~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~v 690 (729)
|++++||+++.++.++++|||+++...... ........++.+|+|||...+ ..++.++||||+||+
T Consensus 144 dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~ 223 (335)
T PTZ00024 144 DLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCI 223 (335)
T ss_pred cccHHHeEECCCCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHH
Confidence 999999999999999999999987654110 111122345678999998765 346889999999999
Q ss_pred HHHHHhCCCCCCCC--------------------cc---------------------------h--HHHHhhcccCCCCC
Q 046589 691 LLELVIRKQPTGPK--------------------FE---------------------------D--KDIVVGCVSDNPIA 721 (729)
Q Consensus 691 l~el~tg~~p~~~~--------------------~~---------------------------~--~~l~~~c~~~~p~~ 721 (729)
+|||+||+.|+... |. . .+++..|++.+|++
T Consensus 224 l~el~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~ 303 (335)
T PTZ00024 224 FAELLTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLE 303 (335)
T ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchh
Confidence 99999999886410 11 0 17899999999999
Q ss_pred CCCccccC
Q 046589 722 KPGMLRVQ 729 (729)
Q Consensus 722 Rp~~~~v~ 729 (729)
||++++++
T Consensus 304 R~s~~~~l 311 (335)
T PTZ00024 304 RISAKEAL 311 (335)
T ss_pred ccCHHHHh
Confidence 99999874
|
|
| >cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-14 Score=150.87 Aligned_cols=104 Identities=24% Similarity=0.474 Sum_probs=83.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-------------------cceecccccccccCccccCCCCCCchhhHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-------------------HISTDVASAISYVPPEYGRARKANERDNIY 685 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-------------------~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~ 685 (729)
|++++||+++.++.++++|||++........ .......++..|+|||......++.++|||
T Consensus 127 dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~ 206 (280)
T cd05581 127 DLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLW 206 (280)
T ss_pred CCCHHHeEECCCCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHH
Confidence 9999999999999999999999886543211 011123456789999988777788999999
Q ss_pred HHHHHHHHHHhCCCCCCCC-------------------cchH--HHHhhcccCCCCCCCCc----ccc
Q 046589 686 RFGVVLLELVIRKQPTGPK-------------------FEDK--DIVVGCVSDNPIAKPGM----LRV 728 (729)
Q Consensus 686 s~G~vl~el~tg~~p~~~~-------------------~~~~--~l~~~c~~~~p~~Rp~~----~~v 728 (729)
|+||+++|+++|+.|+... +.+. +++..|+..+|++||++ +++
T Consensus 207 slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~l 274 (280)
T cd05581 207 ALGCIIYQMLTGKPPFRGSNEYLTFQKILKLEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDEL 274 (280)
T ss_pred HHHHHHHHHHhCCCCCCCccHHHHHHHHHhcCCCCCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHH
Confidence 9999999999999997521 1011 89999999999999999 765
|
Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto |
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-15 Score=160.88 Aligned_cols=109 Identities=25% Similarity=0.410 Sum_probs=86.8
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~ 698 (729)
.||+|+||+||+++.++.+|++|||+++........ ......++..|+|||......++.++|||||||++|||++ |+
T Consensus 258 ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~ 337 (400)
T cd05105 258 CVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGG 337 (400)
T ss_pred eeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCC
Confidence 689999999999999999999999999865432211 1122345678999998877888999999999999999997 88
Q ss_pred CCCCCC---------------c------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGPK---------------F------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~~---------------~------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+... + .. .+++.+||+.+|++|||+.+|+
T Consensus 338 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~ 391 (400)
T cd05105 338 TPYPGMIVDSTFYNKIKSGYRMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLS 391 (400)
T ss_pred CCCcccchhHHHHHHHhcCCCCCCCccCCHHHHHHHHHHCccCHhHCcCHHHHH
Confidence 886421 0 01 1799999999999999998863
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-15 Score=149.09 Aligned_cols=102 Identities=24% Similarity=0.383 Sum_probs=87.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+|-+|||+|+++.+||+|||++.++.. ....++.+|++-|.+||...+.+| ...+|-||+||++|-|+.|..||++
T Consensus 178 DLKLENILLD~N~NiKIADFGLSNly~~--~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG 255 (668)
T KOG0611|consen 178 DLKLENILLDQNNNIKIADFGLSNLYAD--KKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDG 255 (668)
T ss_pred ccchhheeecCCCCeeeeccchhhhhcc--ccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCC
Confidence 9999999999999999999999998764 333456788889999999887777 5779999999999999999999985
Q ss_pred -Ccc---h----------------HHHHhhcccCCCCCCCCcccc
Q 046589 704 -KFE---D----------------KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 -~~~---~----------------~~l~~~c~~~~p~~Rp~~~~v 728 (729)
+.. + ..++.+++--+|++|.|+++|
T Consensus 256 ~Dhk~lvrQIs~GaYrEP~~PSdA~gLIRwmLmVNP~RRATieDi 300 (668)
T KOG0611|consen 256 RDHKRLVRQISRGAYREPETPSDASGLIRWMLMVNPERRATIEDI 300 (668)
T ss_pred chHHHHHHHhhcccccCCCCCchHHHHHHHHHhcCcccchhHHHH
Confidence 211 1 169999999999999999986
|
|
| >cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-14 Score=155.56 Aligned_cols=105 Identities=22% Similarity=0.296 Sum_probs=79.8
Q ss_pred cccccceEec-CCccEEEeecCCccccCCCCCcc--eecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLN-EDFDAKVLDFGLARLISDCKSHI--STDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~-~~~~~kl~dfgl~~~~~~~~~~~--~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++ .+..++++|||+++......... .....++..|+|||... ...++.++|||||||++|||++|+.|
T Consensus 139 dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~p 218 (342)
T cd07854 139 DLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPL 218 (342)
T ss_pred CCCHHHEEEcCCCceEEECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCC
Confidence 9999999998 45688999999987653211111 11234677899999654 35678899999999999999999999
Q ss_pred CCCC------------------------------------c-------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPK------------------------------------F-------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~------------------------------------~-------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+... + .. .+++..|+..+|++|||+++++
T Consensus 219 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell 298 (342)
T cd07854 219 FAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEAL 298 (342)
T ss_pred CCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHh
Confidence 8420 0 00 0689999999999999999874
|
Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi |
| >KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-15 Score=142.99 Aligned_cols=78 Identities=31% Similarity=0.380 Sum_probs=66.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||.|.+++.+...||||||+|+....++..-++....|-+|.|||.+.+ .+|+..+||||.|||+.|++.++--|.
T Consensus 181 DIKPGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQ 259 (449)
T KOG0664|consen 181 DIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQ 259 (449)
T ss_pred cCCCccEEeccCceEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhh
Confidence 999999999999999999999999977555445666677889999998765 678999999999999999986665443
|
|
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-14 Score=152.72 Aligned_cols=103 Identities=24% Similarity=0.388 Sum_probs=88.1
Q ss_pred cccccceEecCC----ccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNED----FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~----~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+|+++... +..+++|||+|..... ........||+.|+|||......|+..+||||.||++|.|++|..|
T Consensus 160 DlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~--~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~P 237 (382)
T KOG0032|consen 160 DLKPENLLLASKDEGSGRIKLIDFGLAKFIKP--GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPP 237 (382)
T ss_pred cCCHHHeeeccccCCCCcEEEeeCCCceEccC--CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCC
Confidence 999999999733 4799999999998764 3345678999999999999888999999999999999999999999
Q ss_pred CCCC--------------------cc-----hHHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPK--------------------FE-----DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~--------------------~~-----~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|... |. ..+++..++..+|..|+|+.+++
T Consensus 238 F~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L 291 (382)
T KOG0032|consen 238 FWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQAL 291 (382)
T ss_pred CcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHh
Confidence 8731 21 11899999999999999998864
|
|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-15 Score=166.93 Aligned_cols=110 Identities=25% Similarity=0.332 Sum_probs=95.9
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|....+||+|+||.|..+++. +++.+|+|+
T Consensus 75 ~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~LYlVM 154 (1317)
T KOG0612|consen 75 EDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDERYLYLVM 154 (1317)
T ss_pred HhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccceEEEE
Confidence 77888899999999999999984 788999997
Q ss_pred ---------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCccee
Q 046589 625 ---------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST 659 (729)
Q Consensus 625 ---------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~ 659 (729)
|+||.|||+|..|++|++|||-+--+..++.-...
T Consensus 155 dY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~ 234 (1317)
T KOG0612|consen 155 DYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSS 234 (1317)
T ss_pred ecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhHHhcCCCCcEEec
Confidence 99999999999999999999966555544444445
Q ss_pred cccccccccCccccC----C-CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 660 DVASAISYVPPEYGR----A-RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 660 ~~~~~~~y~ape~~~----~-~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
..+||+-|++||.+. + +.|...+|+||+||++|||+.|..||+
T Consensus 235 ~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFY 282 (1317)
T KOG0612|consen 235 VAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFY 282 (1317)
T ss_pred cccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcch
Confidence 678999999999643 3 678999999999999999999999998
|
|
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-15 Score=165.61 Aligned_cols=105 Identities=27% Similarity=0.467 Sum_probs=85.9
Q ss_pred cccccceEecC---C--ccEEEeecCCccccCCCCCc--ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhC
Q 046589 625 DIKASNILLNE---D--FDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIR 697 (729)
Q Consensus 625 dlk~~nill~~---~--~~~kl~dfgl~~~~~~~~~~--~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg 697 (729)
|+||.|||++. + ..|+|+|||+++-+..+... ...+..||.||+|||.+....-+..+|++|+|||+|..++|
T Consensus 631 DLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltg 710 (903)
T KOG1027|consen 631 DLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTG 710 (903)
T ss_pred cCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecC
Confidence 99999999975 2 58899999999987754332 23367899999999998877777889999999999988886
Q ss_pred -CCCCCC----------------------CcchHHHHhhcccCCCCCCCCccccC
Q 046589 698 -KQPTGP----------------------KFEDKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 698 -~~p~~~----------------------~~~~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
++||.- +|...+++.+++.++|..||++.+|+
T Consensus 711 G~HpFGd~~~R~~NIl~~~~~L~~L~~~~d~eA~dLI~~ml~~dP~~RPsa~~VL 765 (903)
T KOG1027|consen 711 GSHPFGDSLERQANILTGNYTLVHLEPLPDCEAKDLISRMLNPDPQLRPSATDVL 765 (903)
T ss_pred CccCCCchHHhhhhhhcCccceeeeccCchHHHHHHHHHhcCCCcccCCCHHHHh
Confidence 888762 12223899999999999999999885
|
|
| >cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-14 Score=153.71 Aligned_cols=101 Identities=22% Similarity=0.269 Sum_probs=81.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.++++|||+++..... .....++..|+|||.... ..++.++|+||+||++|++++|+.|+..
T Consensus 143 dlkp~Nill~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~ 218 (343)
T cd07880 143 DLKPGNLAVNEDCELKILDFGLARQTDSE----MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKG 218 (343)
T ss_pred CCCHHHEEEcCCCCEEEeecccccccccC----ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999998765321 123355778999997654 4578899999999999999999998752
Q ss_pred Cc-------------------------------------------------c---hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KF-------------------------------------------------E---DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~-------------------------------------------------~---~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . ..+++.+|+..+|++|||+.+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l 296 (343)
T cd07880 219 HDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEAL 296 (343)
T ss_pred CCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHh
Confidence 10 0 01688899999999999999874
|
Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12 |
| >cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-14 Score=144.07 Aligned_cols=103 Identities=21% Similarity=0.308 Sum_probs=82.0
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
.+|+|+||+||+++.++.++++|||.++..... .....++..|+|||......++.++||||+||++||+++|+.|
T Consensus 106 i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~ 181 (237)
T cd05576 106 IVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDS----CDGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTL 181 (237)
T ss_pred eeccCCCHHHEEEcCCCCEEEecccchhccccc----cccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcch
Confidence 567799999999999999999999987654321 1223445679999988777788999999999999999999976
Q ss_pred CCC--------------Ccch---HHHHhhcccCCCCCCCCccc
Q 046589 701 TGP--------------KFED---KDIVVGCVSDNPIAKPGMLR 727 (729)
Q Consensus 701 ~~~--------------~~~~---~~l~~~c~~~~p~~Rp~~~~ 727 (729)
+.. .+.. .+++.+|++.+|++||++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~ 225 (237)
T cd05576 182 VECHPSGINTHTTLNIPEWVSEEARSLLQQLLQFNPTERLGAGV 225 (237)
T ss_pred hhcCchhcccccccCCcccCCHHHHHHHHHHccCCHHHhcCCCc
Confidence 542 1111 17999999999999999743
|
Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha |
| >cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-14 Score=143.86 Aligned_cols=100 Identities=27% Similarity=0.440 Sum_probs=81.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++|.||+++.++.++++|||++....... .......++..|+|||.......+.++|+||||+++||+++|+.|+...
T Consensus 118 ~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~ 196 (250)
T cd05123 118 DLKPENILLDADGHIKLTDFGLAKELSSEG-SRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAE 196 (250)
T ss_pred CCCcceEEEcCCCcEEEeecCcceecccCC-CcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence 999999999999999999999987754321 1122345677899999887777888999999999999999999997521
Q ss_pred c---------------c------hHHHHhhcccCCCCCCCCc
Q 046589 705 F---------------E------DKDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 705 ~---------------~------~~~l~~~c~~~~p~~Rp~~ 725 (729)
- . ..+++..|+..+|++||++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~ 238 (250)
T cd05123 197 DRKEIYEKILKDPLRFPEFLSPEARDLISGLLQKDPTKRLGS 238 (250)
T ss_pred CHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcCCHhhCCCc
Confidence 0 0 0179999999999999999
|
Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the |
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-14 Score=154.11 Aligned_cols=110 Identities=26% Similarity=0.426 Sum_probs=86.2
Q ss_pred eeeeccccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-C
Q 046589 620 VAVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-R 697 (729)
Q Consensus 620 ~avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g 697 (729)
-++|+|+||.||+++.++.+|++|||+++........ ......++..|+|||......++.++|||||||++||+++ |
T Consensus 199 ~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g 278 (343)
T cd05103 199 KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLG 278 (343)
T ss_pred CeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCC
Confidence 3689999999999999999999999998865322111 1112344567999998877888999999999999999997 7
Q ss_pred CCCCCC-C-------------------cch---HHHHhhcccCCCCCCCCccccC
Q 046589 698 KQPTGP-K-------------------FED---KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 698 ~~p~~~-~-------------------~~~---~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..|+.. . +.. .+++..||+.+|++|||+++|+
T Consensus 279 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil 333 (343)
T cd05103 279 ASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELV 333 (343)
T ss_pred CCCCCCccccHHHHHHHhccCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 777642 0 111 1789999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-14 Score=148.68 Aligned_cols=103 Identities=20% Similarity=0.325 Sum_probs=84.9
Q ss_pred cccccceEec-CCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCC-chhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLN-EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKAN-ERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~-~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||++= .-|-+|+.|||++.-+.+.+ ..++.+|+..|-|||++.+..|+ ..+||||+|||+|-|+.|+.||+
T Consensus 143 DLKPENVVFFEKlGlVKLTDFGFSNkf~PG~--kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFq 220 (864)
T KOG4717|consen 143 DLKPENVVFFEKLGLVKLTDFGFSNKFQPGK--KLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQ 220 (864)
T ss_pred cCCcceeEEeeecCceEeeeccccccCCCcc--hhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccc
Confidence 9999998875 56899999999998876533 23456889999999988777664 56999999999999999999987
Q ss_pred CC-------cch--------------HHHHhhcccCCCCCCCCccccC
Q 046589 703 PK-------FED--------------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~-------~~~--------------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. |.. .+++..++..+|..|.+.+|++
T Consensus 221 eANDSETLTmImDCKYtvPshvS~eCrdLI~sMLvRdPkkRAslEeI~ 268 (864)
T KOG4717|consen 221 EANDSETLTMIMDCKYTVPSHVSKECRDLIQSMLVRDPKKRASLEEIV 268 (864)
T ss_pred cccchhhhhhhhcccccCchhhhHHHHHHHHHHHhcCchhhccHHHHh
Confidence 31 110 1799999999999999999875
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-14 Score=172.98 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=81.4
Q ss_pred eeeeccccccceEecC-------------------CccEEEeecCCccccCCCC--------C-------cceecccccc
Q 046589 620 VAVKKDIKASNILLNE-------------------DFDAKVLDFGLARLISDCK--------S-------HISTDVASAI 665 (729)
Q Consensus 620 ~avk~dlk~~nill~~-------------------~~~~kl~dfgl~~~~~~~~--------~-------~~~~~~~~~~ 665 (729)
-+|||||||+|||++. ++.+|++|||+++...... . .......+|.
T Consensus 100 gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 179 (793)
T PLN00181 100 GIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMS 179 (793)
T ss_pred CeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCc
Confidence 3899999999999954 4556677777765421100 0 0001134678
Q ss_pred cccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCc-------------------ch-HHHHhhcccCCCCCCCCc
Q 046589 666 SYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKF-------------------ED-KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 666 ~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~-------------------~~-~~l~~~c~~~~p~~Rp~~ 725 (729)
+|||||+.....++.++|||||||++|||++|..|+...+ .+ ..++..|+.++|.+||+|
T Consensus 180 ~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~P~~Rps~ 259 (793)
T PLN00181 180 WYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSRTMSSLRHRVLPPQILLNWPKEASFCLWLLHPEPSCRPSM 259 (793)
T ss_pred ceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHHHHHHHHHhhcChhhhhcCHHHHHHHHHhCCCChhhCcCh
Confidence 8999999888889999999999999999999988865211 00 157788999999999999
Q ss_pred cccC
Q 046589 726 LRVQ 729 (729)
Q Consensus 726 ~~v~ 729 (729)
+||+
T Consensus 260 ~eil 263 (793)
T PLN00181 260 SELL 263 (793)
T ss_pred HHHh
Confidence 9874
|
|
| >cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11 | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.5e-14 Score=144.44 Aligned_cols=103 Identities=22% Similarity=0.421 Sum_probs=81.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|++++||+++. +.++++|||+++....... ......++..|+|||+.....++.++|+||||+++|++++|+.|+...
T Consensus 131 ~l~~~nili~~-~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~ 208 (260)
T cd08222 131 DLKAKNIFLKN-NLLKIGDFGVSRLLMGSCD-LATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQ 208 (260)
T ss_pred CCChhheEeec-CCEeecccCceeecCCCcc-cccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence 99999999975 5699999999887643221 122345677899999887777888999999999999999999997520
Q ss_pred ----------------cc----hH--HHHhhcccCCCCCCCCccccC
Q 046589 705 ----------------FE----DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ----------------~~----~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .+ +++.+|+..+|++||++++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il 255 (260)
T cd08222 209 NFLSVVLRIVEGPTPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEIL 255 (260)
T ss_pred cHHHHHHHHHcCCCCCCcchhcHHHHHHHHHHhcCChhhCcCHHHHh
Confidence 00 11 789999999999999999874
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check |
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-14 Score=152.64 Aligned_cols=109 Identities=26% Similarity=0.416 Sum_probs=85.3
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~ 698 (729)
.||+|+||+||+++.++.+|++|||+++......... .....++..|+|||......++.++|||||||++|||++ |.
T Consensus 155 ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~ 234 (334)
T cd05100 155 CIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGG 234 (334)
T ss_pred eeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999987654211111 112233467999998888888999999999999999998 77
Q ss_pred CCCCC-Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGP-KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~-~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+.. ... . .+++.+|+..+|++||+|.+++
T Consensus 235 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell 287 (334)
T cd05100 235 SPYPGIPVEELFKLLKEGHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLV 287 (334)
T ss_pred CCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHH
Confidence 77542 100 0 0799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.5e-14 Score=148.31 Aligned_cols=109 Identities=19% Similarity=0.321 Sum_probs=83.3
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCC------cceecccccccccCccccCC--CCCCchhhHHHHHHHHH
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKS------HISTDVASAISYVPPEYGRA--RKANERDNIYRFGVVLL 692 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~------~~~~~~~~~~~y~ape~~~~--~~~~~~~Dv~s~G~vl~ 692 (729)
+||+|+|++||+++.++.++++|||.+........ .......++.+|+|||.... ..++.++|||||||++|
T Consensus 122 ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~ 201 (314)
T cd08216 122 FIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITAC 201 (314)
T ss_pred eecCCCCcceEEEecCCceEEecCccceeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHH
Confidence 45669999999999999999999998865432111 01122345678999998754 45788999999999999
Q ss_pred HHHhCCCCCCCC-----------------------------cc--------------------------hHHHHhhcccC
Q 046589 693 ELVIRKQPTGPK-----------------------------FE--------------------------DKDIVVGCVSD 717 (729)
Q Consensus 693 el~tg~~p~~~~-----------------------------~~--------------------------~~~l~~~c~~~ 717 (729)
|+++|+.|+... +. ..+++..||..
T Consensus 202 el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~ 281 (314)
T cd08216 202 ELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQR 281 (314)
T ss_pred HHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhc
Confidence 999999997510 00 00589999999
Q ss_pred CCCCCCCccccC
Q 046589 718 NPIAKPGMLRVQ 729 (729)
Q Consensus 718 ~p~~Rp~~~~v~ 729 (729)
+|++|||+++++
T Consensus 282 ~P~~Rpt~~~ll 293 (314)
T cd08216 282 DPESRPSASQLL 293 (314)
T ss_pred CCCcCcCHHHHh
Confidence 999999999874
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc |
| >cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-14 Score=149.62 Aligned_cols=78 Identities=23% Similarity=0.287 Sum_probs=58.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc------eecccccccccCccccCC--CCCCchhhHHHHHHHHHHHHh
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI------STDVASAISYVPPEYGRA--RKANERDNIYRFGVVLLELVI 696 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~------~~~~~~~~~y~ape~~~~--~~~~~~~Dv~s~G~vl~el~t 696 (729)
|+||+||+++.++.++++||+.+.......... .....++..|+|||+... ..++.++|||||||++|||++
T Consensus 126 Dlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~ 205 (328)
T cd08226 126 NIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELAT 205 (328)
T ss_pred CCCHHHEEEeCCCcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHh
Confidence 999999999999999999997543322111000 001233457999998764 346889999999999999999
Q ss_pred CCCCCC
Q 046589 697 RKQPTG 702 (729)
Q Consensus 697 g~~p~~ 702 (729)
|+.|+.
T Consensus 206 g~~p~~ 211 (328)
T cd08226 206 GRVPFQ 211 (328)
T ss_pred CCCCCC
Confidence 999974
|
Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig |
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-14 Score=154.62 Aligned_cols=109 Identities=23% Similarity=0.357 Sum_probs=86.4
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~ 698 (729)
.+|+|+||+||+++.++.+|++|||+++....... .......++..|+|||......++.++|||||||++||+++ |+
T Consensus 260 ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~ 339 (401)
T cd05107 260 CVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGG 339 (401)
T ss_pred cCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCC
Confidence 58999999999999999999999999986432111 11122345678999998877788999999999999999998 78
Q ss_pred CCCCC-Cc--------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGP-KF--------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~-~~--------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+.. .. .. .+++..||..+|++||+|++|+
T Consensus 340 ~P~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell 393 (401)
T cd05107 340 TPYPELPMNEQFYNAIKRGYRMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLV 393 (401)
T ss_pred CCCCCCCchHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 77642 10 00 1799999999999999999874
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-14 Score=140.55 Aligned_cols=103 Identities=21% Similarity=0.334 Sum_probs=86.7
Q ss_pred cccccceEec---CCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLN---EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~---~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+|+|.. .+...|++|||+|+.... .....+.+-|+.|.|||.....+|+-.+|+||+||+||-|+.|.+||
T Consensus 186 DlKpENLLyt~t~~na~lKLtDfGFAK~t~~--~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPF 263 (400)
T KOG0604|consen 186 DLKPENLLYTTTSPNAPLKLTDFGFAKETQE--PGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPF 263 (400)
T ss_pred cCChhheeeecCCCCcceEecccccccccCC--CccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcc
Confidence 9999999996 456889999999998653 23345667889999999988888999999999999999999999998
Q ss_pred C------------------------CCcchH-----HHHhhcccCCCCCCCCccccC
Q 046589 702 G------------------------PKFEDK-----DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~------------------------~~~~~~-----~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+ ++|..- +++...+..+|.+|-|+++|+
T Consensus 264 YS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m 320 (400)
T KOG0604|consen 264 YSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVM 320 (400)
T ss_pred cccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhh
Confidence 7 133311 799999999999999999874
|
|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-14 Score=146.46 Aligned_cols=98 Identities=26% Similarity=0.468 Sum_probs=83.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+||+|.++|.+|.+|+.|||+|+....... +.+.+||+-|.|||..-+...+..+|.||+|+++|||+||++||..
T Consensus 545 DLKPENllLd~~Gy~KLVDFGFAKki~~g~K--TwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~ 622 (732)
T KOG0614|consen 545 DLKPENLLLDNRGYLKLVDFGFAKKIGSGRK--TWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGV 622 (732)
T ss_pred cCChhheeeccCCceEEeehhhHHHhccCCc--eeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCC
Confidence 9999999999999999999999998764332 3457899999999998888889999999999999999999999873
Q ss_pred -C---------------cchH------HHHhhcccCCCCCCCC
Q 046589 704 -K---------------FEDK------DIVVGCVSDNPIAKPG 724 (729)
Q Consensus 704 -~---------------~~~~------~l~~~c~~~~p~~Rp~ 724 (729)
+ |... +++..-+..+|.+|-.
T Consensus 623 dpmktYn~ILkGid~i~~Pr~I~k~a~~Lik~LCr~~P~ERLG 665 (732)
T KOG0614|consen 623 DPMKTYNLILKGIDKIEFPRRITKTATDLIKKLCRDNPTERLG 665 (732)
T ss_pred chHHHHHHHHhhhhhhhcccccchhHHHHHHHHHhcCcHhhhc
Confidence 1 1111 6888888889998865
|
|
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-14 Score=153.63 Aligned_cols=111 Identities=23% Similarity=0.454 Sum_probs=92.3
Q ss_pred cCCCCceeeeccccccceEecCC-ccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHH
Q 046589 614 MPDGKTVAVKKDIKASNILLNED-FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLL 692 (729)
Q Consensus 614 ~~~~~~~avk~dlk~~nill~~~-~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~ 692 (729)
++...+-+||||+|..||+++.+ |.+||+|+|+|..... .+ ...+.||+-+||||.+. ..|++.+||||||+.|+
T Consensus 159 LHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~--s~-aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmL 234 (632)
T KOG0584|consen 159 LHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRK--SH-AKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCML 234 (632)
T ss_pred hhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhc--cc-cceeccCccccChHHHh-hhcchhhhhhhhhHHHH
Confidence 46677889999999999999854 9999999999998753 22 23478999999999775 78999999999999999
Q ss_pred HHHhCCCCCCC-------------Ccc-----------hHHHHhhcccCCCCCCCCccccC
Q 046589 693 ELVIRKQPTGP-------------KFE-----------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 693 el~tg~~p~~~-------------~~~-----------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
||+|+.-|+.- +.. -.+++.+|+.. .++|||+.|++
T Consensus 235 EMvT~eYPYsEC~n~AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~sa~eLL 294 (632)
T KOG0584|consen 235 EMVTSEYPYSECTNPAQIYKKVTSGIKPAALSKVKDPEVREFIEKCLAT-KSERLSAKELL 294 (632)
T ss_pred HHHhccCChhhhCCHHHHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcC-chhccCHHHHh
Confidence 99999988651 000 01899999999 99999998864
|
|
| >KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-13 Score=149.74 Aligned_cols=81 Identities=31% Similarity=0.419 Sum_probs=68.3
Q ss_pred cccccceEec--C--CccEEEeecCCccccCCCCCcceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLN--E--DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~--~--~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+||.||++- . .-.-|++|||.||....+ ......+||.-|.+||.+. .+.|+..+|-|||||++||.+||..
T Consensus 145 DlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~--s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~l 222 (732)
T KOG4250|consen 145 DLKPGNIVLQIGEDGQSIYKLTDFGAARELDDN--SLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGEL 222 (732)
T ss_pred cCCCCcEEEeecCCCceEEeeecccccccCCCC--CeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCC
Confidence 9999999984 2 235699999999998643 2445678999999999887 4889999999999999999999999
Q ss_pred CCCCCcch
Q 046589 700 PTGPKFED 707 (729)
Q Consensus 700 p~~~~~~~ 707 (729)
||-+-|.+
T Consensus 223 PF~p~~~p 230 (732)
T KOG4250|consen 223 PFIPFGGP 230 (732)
T ss_pred CCCcCCCc
Confidence 99875544
|
|
| >smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain | Back alignment and domain information |
|---|
Probab=99.40 E-value=6e-13 Score=134.54 Aligned_cols=107 Identities=26% Similarity=0.421 Sum_probs=87.5
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
.+|+|+++.||+++.++.++++|||.+....... ......++..|++||......++.++||||+|++++|+++|+.|
T Consensus 108 i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~--~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p 185 (244)
T smart00220 108 IIHRDLKPENILLDEDGHVKLADFGLARQLDPGG--LLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPP 185 (244)
T ss_pred eecCCcCHHHeEECCCCcEEEccccceeeecccc--ccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 5678999999999999999999999988765321 12234567789999988777788899999999999999999998
Q ss_pred CCC-C----------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 701 TGP-K----------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~-~----------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+.. . +..+ +++.+|+..+|++||++.+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~ 239 (244)
T smart00220 186 FPGDDQLLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEEAL 239 (244)
T ss_pred CCCCCcHHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccCHHHHh
Confidence 752 0 1111 799999999999999999874
|
Phosphotransferases. Serine or threonine-specific kinase subfamily. |
| >PLN03224 probable serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.6e-13 Score=146.18 Aligned_cols=109 Identities=20% Similarity=0.290 Sum_probs=75.2
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCC----------------------C
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARK----------------------A 678 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~----------------------~ 678 (729)
+||||+||+||+++.++.+|++|||+++...............+..|+|||...... .
T Consensus 330 ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~ 409 (507)
T PLN03224 330 IVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGR 409 (507)
T ss_pred eecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCC
Confidence 345599999999999999999999999765432111111123367899999653211 1
Q ss_pred CchhhHHHHHHHHHHHHhCCC-CCCC----------------Ccc---------------h---HHHHhhcccCCC---C
Q 046589 679 NERDNIYRFGVVLLELVIRKQ-PTGP----------------KFE---------------D---KDIVVGCVSDNP---I 720 (729)
Q Consensus 679 ~~~~Dv~s~G~vl~el~tg~~-p~~~----------------~~~---------------~---~~l~~~c~~~~p---~ 720 (729)
..+.||||+||+++||++|.. |+.. .|. . .+++.+++..+| +
T Consensus 410 ~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~ 489 (507)
T PLN03224 410 PDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKYDFSLLDRNKEAGWDLACKLITKRDQANR 489 (507)
T ss_pred CCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCCCcccccccChHHHHHHHHHhccCCCCcc
Confidence 234699999999999999875 4320 010 0 068888888765 7
Q ss_pred CCCCccccC
Q 046589 721 AKPGMLRVQ 729 (729)
Q Consensus 721 ~Rp~~~~v~ 729 (729)
+|+|++|++
T Consensus 490 ~RlSa~eaL 498 (507)
T PLN03224 490 GRLSVGQAL 498 (507)
T ss_pred cCCCHHHHh
Confidence 899999864
|
|
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-13 Score=144.80 Aligned_cols=103 Identities=26% Similarity=0.392 Sum_probs=87.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+|+.||+||.++..||+|||++..+.. .....+.+|+..|.|||.+.+..+ ..++|+||+|+++|.|+.|.-||++
T Consensus 180 dLk~eNilL~~~mnikIaDfgfS~~~~~--~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG 257 (596)
T KOG0586|consen 180 DLKAENILLDENMNIKIADFGFSTFFDY--GLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDG 257 (596)
T ss_pred ccchhhcccccccceeeeccccceeecc--cccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCC
Confidence 9999999999999999999999998763 233446688999999998877555 7889999999999999999999995
Q ss_pred Ccc---------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KFE---------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~---------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..- -+.++.+.+-.+|+.|++++++.
T Consensus 258 ~~lk~Lr~rvl~gk~rIp~~ms~dce~lLrk~lvl~Pskr~~~dqim 304 (596)
T KOG0586|consen 258 QNLKELRPRVLRGKYRIPFYMSCDCEDLLRKFLVLNPSKRGPCDQIM 304 (596)
T ss_pred cccccccchheeeeecccceeechhHHHHHHhhccCccccCCHHHhh
Confidence 221 11799999999999999998863
|
|
| >KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.7e-14 Score=140.45 Aligned_cols=74 Identities=27% Similarity=0.394 Sum_probs=59.5
Q ss_pred cccccceEecC--------------------CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhH
Q 046589 625 DIKASNILLNE--------------------DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684 (729)
Q Consensus 625 dlk~~nill~~--------------------~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv 684 (729)
|+||+|||+-+ ...++|.|||-|..-.. .+ ...++|.-|.|||...+...+.++||
T Consensus 217 DLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e--~h--s~iVsTRHYRAPEViLgLGwS~pCDv 292 (415)
T KOG0671|consen 217 DLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHE--HH--STIVSTRHYRAPEVILGLGWSQPCDV 292 (415)
T ss_pred CCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceecc--Cc--ceeeeccccCCchheeccCcCCccCc
Confidence 99999999821 23468999998876432 22 35678899999999888888999999
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 046589 685 YRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 685 ~s~G~vl~el~tg~~p~~ 702 (729)
||+|||+.|+.||..-|+
T Consensus 293 WSiGCIL~ElytG~~LFq 310 (415)
T KOG0671|consen 293 WSIGCILVELYTGETLFQ 310 (415)
T ss_pred eeeeeEEEEeeccceecc
Confidence 999999999998877554
|
|
| >KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-14 Score=147.81 Aligned_cols=76 Identities=28% Similarity=0.483 Sum_probs=66.3
Q ss_pred cccccceEecCC---ccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNED---FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~---~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+|||+.+. -.+|+||||.||+... ..-...+.||++|.|||.+.++.|+..-|+||.|||+|.-+.|..||
T Consensus 689 DLKPENVLLas~~~FPQvKlCDFGfARiIgE--ksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPF 766 (888)
T KOG4236|consen 689 DLKPENVLLASASPFPQVKLCDFGFARIIGE--KSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPF 766 (888)
T ss_pred cCCchheeeccCCCCCceeeccccceeecch--hhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccC
Confidence 999999999744 3789999999999763 22234578999999999999999999999999999999999999998
Q ss_pred C
Q 046589 702 G 702 (729)
Q Consensus 702 ~ 702 (729)
.
T Consensus 767 N 767 (888)
T KOG4236|consen 767 N 767 (888)
T ss_pred C
Confidence 6
|
|
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.8e-13 Score=134.20 Aligned_cols=100 Identities=24% Similarity=0.383 Sum_probs=77.4
Q ss_pred cccccceEecCCccEEEeecCCccccCC--------C------------------------CCc---------------c
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISD--------C------------------------KSH---------------I 657 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~--------~------------------------~~~---------------~ 657 (729)
|+||+|||+.++|++.++||-++..... + ... .
T Consensus 204 DLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~ 283 (459)
T KOG0610|consen 204 DLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPEL 283 (459)
T ss_pred cCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhh
Confidence 9999999999999999999976643210 0 000 0
Q ss_pred --e------ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcc-----------------------
Q 046589 658 --S------TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFE----------------------- 706 (729)
Q Consensus 658 --~------~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~----------------------- 706 (729)
. -..+||--|.|||...+...+..+|+|+|||++|||+.|+.||-+.-.
T Consensus 284 ~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~Tl~NIv~~~l~Fp~~~~vs~~ 363 (459)
T KOG0610|consen 284 VAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKETLRNIVGQPLKFPEEPEVSSA 363 (459)
T ss_pred hcCCCCccccccccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCchhhHHHHhcCCCcCCCCCcchhH
Confidence 0 012456669999999888888999999999999999999999874211
Q ss_pred hHHHHhhcccCCCCCCCC
Q 046589 707 DKDIVVGCVSDNPIAKPG 724 (729)
Q Consensus 707 ~~~l~~~c~~~~p~~Rp~ 724 (729)
..+++..-+..||..|-.
T Consensus 364 akDLIr~LLvKdP~kRlg 381 (459)
T KOG0610|consen 364 AKDLIRKLLVKDPSKRLG 381 (459)
T ss_pred HHHHHHHHhccChhhhhc
Confidence 118999999999999987
|
|
| >KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.8e-13 Score=131.55 Aligned_cols=82 Identities=29% Similarity=0.400 Sum_probs=71.0
Q ss_pred ceeeeccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCC
Q 046589 619 TVAVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 619 ~~avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
..++|||+||+||++..+..+||.|||+|+.... +-.++....++.|.|||..-+..+.+.+||||.||++.||++|+
T Consensus 137 ~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~--~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~ 214 (369)
T KOG0665|consen 137 AGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDT--DFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGT 214 (369)
T ss_pred cceeecccCcccceecchhheeeccchhhcccCc--ccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhce
Confidence 4588999999999999999999999999987543 23566778899999999877777999999999999999999987
Q ss_pred CCCC
Q 046589 699 QPTG 702 (729)
Q Consensus 699 ~p~~ 702 (729)
--|.
T Consensus 215 Vlf~ 218 (369)
T KOG0665|consen 215 VLFP 218 (369)
T ss_pred EEec
Confidence 6544
|
|
| >KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-12 Score=144.96 Aligned_cols=104 Identities=21% Similarity=0.417 Sum_probs=84.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-----CCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-----ARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-----~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+|..|||++.++.+|++|||++...... ....-+..||+.|||||... ...|+.++|+||+|++..||..|.+
T Consensus 148 DikG~NiLLT~e~~VKLvDFGvSaQldsT-~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~P 226 (953)
T KOG0587|consen 148 DIKGQNVLLTENAEVKLVDFGVSAQLDST-VGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAP 226 (953)
T ss_pred cccCceEEEeccCcEEEeeeeeeeeeecc-cccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCC
Confidence 99999999999999999999998876532 22223467889999999654 3567889999999999999999998
Q ss_pred CCCC----------------------CcchH--HHHhhcccCCCCCCCCccccC
Q 046589 700 PTGP----------------------KFEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~----------------------~~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|..- .|.++ +++..|+-.+-++||++.+++
T Consensus 227 Pl~DmHPmraLF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll 280 (953)
T KOG0587|consen 227 PLCDMHPMRALFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELL 280 (953)
T ss_pred CccCcchhhhhccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCcchhhhc
Confidence 8540 23333 899999999999999998764
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-13 Score=143.60 Aligned_cols=124 Identities=31% Similarity=0.447 Sum_probs=62.9
Q ss_pred CEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCC
Q 046589 156 KMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDN 235 (729)
Q Consensus 156 ~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 235 (729)
...||+.|++. .+|..++.+..|+.+.|++|.+. .+|..++++..|.+|||+.|+++ .+|..++.|+ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34445555544 44555555555555555555554 44555555555555555555554 4444444442 455555555
Q ss_pred cCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccc
Q 046589 236 LLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQF 286 (729)
Q Consensus 236 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l 286 (729)
+++ .+| ..++.+..|..||.+.|.+. .+|..++.+.+|+.+.+..|++
T Consensus 154 kl~-~lp-~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l 201 (722)
T KOG0532|consen 154 KLT-SLP-EEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHL 201 (722)
T ss_pred ccc-cCC-cccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhh
Confidence 554 344 22344555555555555555 4555555555555555555544
|
|
| >KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-12 Score=136.52 Aligned_cols=75 Identities=31% Similarity=0.280 Sum_probs=63.8
Q ss_pred cccccceEecCC-ccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNED-FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~-~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
||||.|||+.+. ...|+||||-|......+. +....+..|.|||+..+..|+...|+||.||.+|||-||+-.|.
T Consensus 561 DIKPDNiLVNE~k~iLKLCDfGSA~~~~enei---tPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFp 636 (752)
T KOG0670|consen 561 DIKPDNILVNESKNILKLCDFGSASFASENEI---TPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFP 636 (752)
T ss_pred ccCccceEeccCcceeeeccCccccccccccc---cHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecC
Confidence 999999999965 6889999998877654332 33455678999999999999999999999999999999998765
|
|
| >KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-12 Score=133.40 Aligned_cols=78 Identities=28% Similarity=0.472 Sum_probs=63.8
Q ss_pred cccccceEecCCccEEEeecCCccccC---CC-----CC------------------------------c---ceecccc
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLIS---DC-----KS------------------------------H---ISTDVAS 663 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~---~~-----~~------------------------------~---~~~~~~~ 663 (729)
||||.|||+|.+|+.|++|||++..+. .+ .. + .....+|
T Consensus 754 DiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvg 833 (1034)
T KOG0608|consen 754 DIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVG 833 (1034)
T ss_pred ccCccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcC
Confidence 999999999999999999999986431 00 00 0 0001468
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|.-|+|||.+....++.-+|+||.|||+|||+.|+.||-
T Consensus 834 t~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~ 872 (1034)
T KOG0608|consen 834 TPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFL 872 (1034)
T ss_pred CCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCcc
Confidence 888999999988889999999999999999999999985
|
|
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-11 Score=119.59 Aligned_cols=105 Identities=21% Similarity=0.327 Sum_probs=77.1
Q ss_pred cccccceEecCCc---cEEEeecCCccccC---CC---CCcceecccccccccCcccc---C--CCCCCchhhHHHHHHH
Q 046589 625 DIKASNILLNEDF---DAKVLDFGLARLIS---DC---KSHISTDVASAISYVPPEYG---R--ARKANERDNIYRFGVV 690 (729)
Q Consensus 625 dlk~~nill~~~~---~~kl~dfgl~~~~~---~~---~~~~~~~~~~~~~y~ape~~---~--~~~~~~~~Dv~s~G~v 690 (729)
|+||+|||-.... -+|||||-++..+. +. .+....++.|+.-|||||.. . ...|+-++|.||+|||
T Consensus 201 DlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvI 280 (463)
T KOG0607|consen 201 DLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVI 280 (463)
T ss_pred cCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHH
Confidence 9999999986443 56999997765432 11 11122356788889999943 2 3567889999999999
Q ss_pred HHHHHhCCCCCCC------CcchH----------------------------------HHHhhcccCCCCCCCCccccC
Q 046589 691 LLELVIRKQPTGP------KFEDK----------------------------------DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 691 l~el~tg~~p~~~------~~~~~----------------------------------~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+|-|+.|..||.+ +|.+. +++..-+..++.+|-++.+|+
T Consensus 281 lYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vl 359 (463)
T KOG0607|consen 281 LYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVL 359 (463)
T ss_pred HHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhcc
Confidence 9999999999973 45421 677777778888888777664
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.7e-13 Score=139.61 Aligned_cols=171 Identities=30% Similarity=0.417 Sum_probs=141.1
Q ss_pred cEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeec
Q 046589 107 VVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186 (729)
Q Consensus 107 ~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 186 (729)
.+..||+.|.+. .+|..+..+..|+.|.|..|.+.. +|.+++++..|++|||+.|+++ .+|..++.|+ |+.|-+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 455677777776 677777777888888888888755 4667888899999999999998 7888888776 88999999
Q ss_pred cCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccC
Q 046589 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNI 266 (729)
Q Consensus 187 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 266 (729)
|+++ .+|..++.+..|..||.+.|++. .+|..++.+.+|+.|++..|++. .+|. .+.. -.|..||+|.|++. .+
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~-El~~-LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE-ELCS-LPLIRLDFSCNKIS-YL 226 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH-HHhC-CceeeeecccCcee-ec
Confidence 9997 78888888889999999999987 78888999999999999999887 5663 3443 35788999999988 78
Q ss_pred CccccCCCcCCeecccccccc
Q 046589 267 PPEISHLKKLSDHYLGINQFT 287 (729)
Q Consensus 267 p~~l~~l~~L~~l~l~~n~l~ 287 (729)
|-.|.+|+.|+++-|.+|.++
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred chhhhhhhhheeeeeccCCCC
Confidence 899999999999999888876
|
|
| >KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-11 Score=132.59 Aligned_cols=103 Identities=26% Similarity=0.419 Sum_probs=81.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC---CCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+|..||++++.+.+|++|||.+..+... ........||++|||||.+. ...|.+++|||+.|+...|+-..+.|.
T Consensus 137 diKGanilltd~gDvklaDfgvsaqitat-i~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqppl 215 (829)
T KOG0576|consen 137 DIKGANILLTDEGDVKLADFGVSAQITAT-IAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPL 215 (829)
T ss_pred cccccceeecccCceeecccCchhhhhhh-hhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcc
Confidence 99999999999999999999988765421 11122468899999999653 477899999999999999988777763
Q ss_pred C-C-----------------------CcchH--HHHhhcccCCCCCCCCcccc
Q 046589 702 G-P-----------------------KFEDK--DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 702 ~-~-----------------------~~~~~--~l~~~c~~~~p~~Rp~~~~v 728 (729)
. . .|.+. +++..|+-.+|..||+++..
T Consensus 216 fdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~altknpKkRptaekl 268 (829)
T KOG0576|consen 216 FDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGALTKNPKKRPTAEKL 268 (829)
T ss_pred cccchHHHHHHhhccCCCCCcccCCccchHHHHHHHHHHhcCCCccCCChhhh
Confidence 3 0 23322 89999999999999999864
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5e-11 Score=130.47 Aligned_cols=104 Identities=43% Similarity=0.618 Sum_probs=47.7
Q ss_pred CCCCcEEEeeccCCCccCCccccCCC-CCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCE
Q 046589 176 LTWLETLSLCSNSFTGEMPSELGDMK-QLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSY 254 (729)
Q Consensus 176 L~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~ 254 (729)
++.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..++.+++|+.|++++|+++ .++ .....+++|+.
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~-~~~~~~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLP-KLLSNLSNLNN 190 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhh-hhhhhhhhhhh
Confidence 344445555555544 3444444442 5555555555554 33344455555555555555554 333 11124455555
Q ss_pred EEcccccccccCCccccCCCcCCeeccccc
Q 046589 255 LDVSNNLLSGNIPPEISHLKKLSDHYLGIN 284 (729)
Q Consensus 255 L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n 284 (729)
|++++|++. .+|..+.....|+++.++.|
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 555555554 33443333333444444444
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-10 Score=128.07 Aligned_cols=195 Identities=34% Similarity=0.476 Sum_probs=119.3
Q ss_pred cEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCC-CCCeeeccCCcCCCCCChhhhccCCCCCEEEcc
Q 046589 180 ETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELT-RLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVS 258 (729)
Q Consensus 180 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 258 (729)
..++++.|.+. .....+..++.++.|++.+|.++ .+|...+.+. +|+.|++++|.+. .++ ..+..+++|+.|+++
T Consensus 96 ~~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~-~~~~~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLP-SPLRNLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhh-hhhhccccccccccC
Confidence 35777777774 23345566688999999999998 6677777775 8999999999887 454 456788889999999
Q ss_pred cccccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEc
Q 046589 259 NNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWL 338 (729)
Q Consensus 259 ~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L 338 (729)
+|++. .+|...+.+..|+.++++.|+++. +|..+.....|+++++
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~----------------------------------l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKISD----------------------------------LPPEIELLSALEELDL 216 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCcccc----------------------------------Cchhhhhhhhhhhhhh
Confidence 99888 455555566777777777776651 2222223334556666
Q ss_pred cCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcC
Q 046589 339 NNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNML 418 (729)
Q Consensus 339 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 418 (729)
++|... ..+..+.++.++..+.+.+|++.. .+..+..+++++.|++++|.++.... +..+.+++.|++++|.+
T Consensus 217 ~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~-----~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 217 SNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS-----LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc-----ccccCccCEEeccCccc
Confidence 666422 233445555566666666666542 23444444445555555555443222 22334444555555554
Q ss_pred cc
Q 046589 419 TG 420 (729)
Q Consensus 419 ~~ 420 (729)
..
T Consensus 290 ~~ 291 (394)
T COG4886 290 SN 291 (394)
T ss_pred cc
Confidence 43
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.3e-11 Score=134.91 Aligned_cols=108 Identities=34% Similarity=0.568 Sum_probs=57.6
Q ss_pred CCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 046589 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSD 234 (729)
Q Consensus 155 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 234 (729)
++.|+|++|.+.+.+|..++.+++|++|+|++|++++.+|..++.+++|+.|+|++|++++.+|..++++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CcCCCCCChhhhccCCCCCEEEcccccc
Q 046589 235 NLLSGSLTVSLFTNLQSLSYLDVSNNLL 262 (729)
Q Consensus 235 N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 262 (729)
|.++|.+|........++..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 5555555532211123445555555543
|
|
| >cd00180 PKc Catalytic domain of Protein Kinases | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-10 Score=114.14 Aligned_cols=98 Identities=30% Similarity=0.539 Sum_probs=77.6
Q ss_pred eeeccccccceEecC-CccEEEeecCCccccCCCCCcceecccccccccCccccCCC-CCCchhhHHHHHHHHHHHHhCC
Q 046589 621 AVKKDIKASNILLNE-DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR-KANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 621 avk~dlk~~nill~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~-~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
.+|+|+++.||+++. +..++++|||.+........ ..........|++||..... ..+.+.|+|++|++++++
T Consensus 113 ~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l---- 187 (215)
T cd00180 113 IIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS-LLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL---- 187 (215)
T ss_pred eeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc-hhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH----
Confidence 345599999999998 89999999999887653211 12234456789999987665 778899999999999998
Q ss_pred CCCCCCcchHHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGPKFEDKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~~~~~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
-.-.+++..|++.+|++||++++++
T Consensus 188 ------~~~~~~l~~~l~~~p~~R~~~~~l~ 212 (215)
T cd00180 188 ------PELKDLIRKMLQKDPEKRPSAKEIL 212 (215)
T ss_pred ------HHHHHHHHHHhhCCcccCcCHHHHh
Confidence 1122889999999999999998864
|
Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-10 Score=133.08 Aligned_cols=109 Identities=33% Similarity=0.560 Sum_probs=101.4
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEcc
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 209 (729)
.++.|+|++|.+.+.+|..++++++|+.|+|++|++.+.+|..++.+++|++|+|++|++++.+|+.++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCC-CCCCeeeccCCcCC
Q 046589 210 GNGFNGTVPIRLGEL-TRLQDLDLSDNLLS 238 (729)
Q Consensus 210 ~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~ 238 (729)
+|++++.+|..++.+ .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999999999988764 56788999988654
|
|
| >smart00221 STYKc Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.2e-10 Score=112.42 Aligned_cols=79 Identities=34% Similarity=0.466 Sum_probs=63.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCcccc-CCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYG-RARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~-~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+++.||+++.++.++++|||.+...............++..|++||.. ....++.++|||+||++++|+++|+.|++.
T Consensus 123 di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~ 202 (225)
T smart00221 123 DLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG 202 (225)
T ss_pred CCCHHHEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999887654221112234566789999987 556677799999999999999999999754
|
Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-10 Score=109.53 Aligned_cols=80 Identities=33% Similarity=0.461 Sum_probs=15.5
Q ss_pred CCcEEECCCCCCCCCCccccc-CCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccc-cCCCCCcEEE
Q 046589 130 KLRVLNLSQNLLFGQPSPQVS-NLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSEL-GDMKQLKSLD 207 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ 207 (729)
++++|+|.+|+|+.+. .++ .+.+|+.||||+|.|+. ++ .+..++.|++|++++|+++. +++.+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred cccccccccccccccc--chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 4455555555554331 222 24455555555555542 22 24445555555555555542 22222 2345555555
Q ss_pred ccCCCCC
Q 046589 208 FSGNGFN 214 (729)
Q Consensus 208 Ls~N~l~ 214 (729)
|++|++.
T Consensus 95 L~~N~I~ 101 (175)
T PF14580_consen 95 LSNNKIS 101 (175)
T ss_dssp -TTS---
T ss_pred CcCCcCC
Confidence 5555543
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-10 Score=133.69 Aligned_cols=100 Identities=11% Similarity=0.217 Sum_probs=77.9
Q ss_pred ceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC----
Q 046589 630 NILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK---- 704 (729)
Q Consensus 630 nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~---- 704 (729)
|++++.+...++.|||.++....... .......||++|+|||...+..++.++|||||||++|||+||+.||...
T Consensus 508 ~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~vGT~~Y~APE~l~~~~~~~~~DiwSlG~il~ElltG~~pf~~~~~~~ 587 (669)
T cd05610 508 NLYQTPKQVKIGTPYRTPKSVRRGAAPVEGERILGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDETPQQ 587 (669)
T ss_pred ceeECCccccccccCCCchhhhcccccccCCceeeCccccCHHHcCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Confidence 56666666778889998877542211 1223457899999999888888999999999999999999999998631
Q ss_pred -----------cch---------HHHHhhcccCCCCCCCCccccC
Q 046589 705 -----------FED---------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 -----------~~~---------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|.. .+++..|+..+|++||++++++
T Consensus 588 ~~~~il~~~~~~p~~~~~~~~~~~~~l~~lL~~dP~~R~ta~e~l 632 (669)
T cd05610 588 VFQNILNRDIPWPEGEEKLSVNAQNAIEILLTMDPTKRAGLKELK 632 (669)
T ss_pred HHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhHCcCHHHHH
Confidence 111 1588899999999999999874
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-10 Score=108.18 Aligned_cols=127 Identities=31% Similarity=0.379 Sum_probs=52.0
Q ss_pred ccCCCCCCEEeccCCcCcccCCcccc-CCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCcccc-CCCCC
Q 046589 149 VSNLKRLKMLSLGENQLSGSLPSQLG-VLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRL-GELTR 226 (729)
Q Consensus 149 ~~~l~~L~~L~Ls~N~l~~~~p~~l~-~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~ 226 (729)
+.+...+++|+|++|.|+ .+ +.++ .+.+|+.|||++|.++. ++ .+..+++|++|++++|.++. +++.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 445567999999999998 34 3465 58899999999999984 43 58889999999999999984 44444 46899
Q ss_pred CCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCC---ccccCCCcCCeec
Q 046589 227 LQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIP---PEISHLKKLSDHY 280 (729)
Q Consensus 227 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~l~ 280 (729)
|++|++++|++...-....+..+++|++|+|.+|.++...- ..+..+++|+.|+
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 99999999999854445678889999999999999874311 1345667777665
|
|
| >KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.5e-10 Score=105.41 Aligned_cols=76 Identities=20% Similarity=0.346 Sum_probs=61.3
Q ss_pred cccccceEecC-CccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNE-DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||.|+++|. ....++.|+|+|.+..+...- .....+..|.-||.+.. ..|+-.-|+|||||++.+|+-.+.||.
T Consensus 157 DVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eY--nVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFF 234 (338)
T KOG0668|consen 157 DVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEY--NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFF 234 (338)
T ss_pred cCCcceeeechhhceeeeeecchHhhcCCCcee--eeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCccc
Confidence 99999999995 468999999999998764321 12233456678998765 567888999999999999999999986
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.8e-11 Score=115.63 Aligned_cols=140 Identities=27% Similarity=0.295 Sum_probs=91.8
Q ss_pred CcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCcccc
Q 046589 119 GPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELG 198 (729)
Q Consensus 119 ~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~ 198 (729)
|++-..+-..+.|+.||||+|.|+.+. .+..-.+.++.|++|+|.|.. + +.+..+.+|+.||||+|.++ .+..+=.
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~ 349 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHL 349 (490)
T ss_pred CceEEecchHhhhhhccccccchhhhh-hhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHh
Confidence 333334445567888888888776543 344556778888888888762 2 33777788888888888776 4445555
Q ss_pred CCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccc
Q 046589 199 DMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG 264 (729)
Q Consensus 199 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 264 (729)
++-+.+.|.|+.|.+.. -..++++.+|..||+++|+|...-....+++++.|+++.|.+|.+.+
T Consensus 350 KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 67777788888877652 22466677777777777777633334456666666666666666653
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-09 Score=128.55 Aligned_cols=126 Identities=29% Similarity=0.382 Sum_probs=58.3
Q ss_pred CCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCc--CcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEE
Q 046589 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQ--LSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSL 206 (729)
Q Consensus 129 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 206 (729)
...+...+-+|.+....-. ...++|+.|-+..|. +....++.|..++.|++|||++|.--+.+|+.+++|-+||+|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 3444455544444332111 112245555555553 332222234445555555555544444555555555555555
Q ss_pred EccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcc
Q 046589 207 DFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVS 258 (729)
Q Consensus 207 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 258 (729)
+|++..+. .+|..+++|..|.+|++..+.-...+ ......+++|++|.+.
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLP 650 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEee
Confidence 55555554 45555555555555555544432222 2333445555555553
|
|
| >KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-10 Score=119.22 Aligned_cols=107 Identities=25% Similarity=0.438 Sum_probs=83.3
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCC-----CcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHH
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCK-----SHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELV 695 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~-----~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~ 695 (729)
-+|+|+||.||....+...||.|||+..-+.... ....+.-.+|.+||+||-..+.+|+.|+||||+|++++|++
T Consensus 377 ~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~ 456 (516)
T KOG1033|consen 377 LIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELL 456 (516)
T ss_pred chhhhccccccccccchhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHH
Confidence 3578999999999999999999999886655333 11223457899999999999999999999999999999998
Q ss_pred h-CCCCCC----------CCcc--------hH-HHHhhcccCCCCCCCCccc
Q 046589 696 I-RKQPTG----------PKFE--------DK-DIVVGCVSDNPIAKPGMLR 727 (729)
Q Consensus 696 t-g~~p~~----------~~~~--------~~-~l~~~c~~~~p~~Rp~~~~ 727 (729)
+ =..+++ ..|. ++ .+..+.+.+.|.+||++.+
T Consensus 457 ~~f~T~~er~~t~~d~r~g~ip~~~~~d~p~e~~ll~~lls~~p~~RP~~~~ 508 (516)
T KOG1033|consen 457 IQFSTQFERIATLTDIRDGIIPPEFLQDYPEEYTLLQQLLSPSPEERPSAIE 508 (516)
T ss_pred HHhccHHHHHHhhhhhhcCCCChHHhhcCcHHHHHHHHhcCCCcccCchHHH
Confidence 7 222221 1222 22 7999999999999997654
|
|
| >KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-09 Score=116.19 Aligned_cols=75 Identities=24% Similarity=0.421 Sum_probs=61.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+|-+|+.+|.+|.+|+.|||-|..... ..-....||.+|.|||.+.+.+| ...-||||+|+++|.++...-|++
T Consensus 695 dikdenvivd~~g~~klidfgsaa~~ks---gpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy 770 (772)
T KOG1152|consen 695 DIKDENVIVDSNGFVKLIDFGSAAYTKS---GPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY 770 (772)
T ss_pred ccccccEEEecCCeEEEeeccchhhhcC---CCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence 9999999999999999999998766532 12234688999999999887666 555799999999999888877754
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-10 Score=126.14 Aligned_cols=129 Identities=33% Similarity=0.411 Sum_probs=83.5
Q ss_pred CCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCee
Q 046589 151 NLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDL 230 (729)
Q Consensus 151 ~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 230 (729)
.+..++.+++..|.+. .+-..++.+++|+.|++..|++. .+...+..+++|++|++++|.|+... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 3455566666677665 23444666777777777777776 33333667777777788777776433 25566667888
Q ss_pred eccCCcCCCCCChhhhccCCCCCEEEcccccccccCC-ccccCCCcCCeecccccccc
Q 046589 231 DLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIP-PEISHLKKLSDHYLGINQFT 287 (729)
Q Consensus 231 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~l~~n~l~ 287 (729)
++++|.++ .+ ..+..+++|+.+++++|.+...-+ . +..+.+++.++++.|.+.
T Consensus 146 ~l~~N~i~-~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 146 NLSGNLIS-DI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eeccCcch-hc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 88888776 23 335557788888888888774433 2 456666777777776654
|
|
| >KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-10 Score=114.32 Aligned_cols=78 Identities=29% Similarity=0.365 Sum_probs=58.8
Q ss_pred cccccceEec-CCccEEEeecCCccccC-----------------C-C----------------CCcc---------eec
Q 046589 625 DIKASNILLN-EDFDAKVLDFGLARLIS-----------------D-C----------------KSHI---------STD 660 (729)
Q Consensus 625 dlk~~nill~-~~~~~kl~dfgl~~~~~-----------------~-~----------------~~~~---------~~~ 660 (729)
|+||+|++.+ ..+.-.+.|||+|.... . . .... -..
T Consensus 157 DiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~an 236 (418)
T KOG1167|consen 157 DIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERAN 236 (418)
T ss_pred CCCccccccccccCCceEEechhHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecc
Confidence 9999999998 45777899999997110 0 0 0000 012
Q ss_pred ccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 661 VASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 661 ~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
.+||+||.|||.... ..-++++||||-|||++-+++++.||.
T Consensus 237 rAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf 279 (418)
T KOG1167|consen 237 RAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFF 279 (418)
T ss_pred cCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccc
Confidence 579999999997643 445788999999999999999999986
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-09 Score=127.38 Aligned_cols=127 Identities=33% Similarity=0.446 Sum_probs=90.9
Q ss_pred CCcEEECCCCC--CCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEE
Q 046589 130 KLRVLNLSQNL--LFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLD 207 (729)
Q Consensus 130 ~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 207 (729)
+|++|-+..|. +..+....|..++.|++||||+|.=-+.+|+.++.|-+|++|+|++..+. .+|..+++++.|.+||
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 68888888886 55555556778888888888887655678888888888888888888887 7888888888888888
Q ss_pred ccCCCCCCCCccccCCCCCCCeeeccCCcCC-CCCChhhhccCCCCCEEEc
Q 046589 208 FSGNGFNGTVPIRLGELTRLQDLDLSDNLLS-GSLTVSLFTNLQSLSYLDV 257 (729)
Q Consensus 208 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~~l~~L~~L~L 257 (729)
+.++.....+|.....|++|++|.+..-... +..-...+.++++|+.+..
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 8887765566777777888888887654321 1112233444555555544
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.2e-10 Score=115.25 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=19.1
Q ss_pred CCCCCCEEeccCCcCcccCC--ccccCCCCCcEEEeeccCCC
Q 046589 151 NLKRLKMLSLGENQLSGSLP--SQLGVLTWLETLSLCSNSFT 190 (729)
Q Consensus 151 ~l~~L~~L~Ls~N~l~~~~p--~~l~~L~~L~~L~Ls~N~l~ 190 (729)
++++|+...|.+..+. ..+ .....+++++.|||+.|-+.
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~ 159 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFH 159 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHH
Confidence 4556666666666554 222 13334444555555544443
|
|
| >KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-09 Score=104.59 Aligned_cols=75 Identities=29% Similarity=0.511 Sum_probs=54.3
Q ss_pred cccccceEe-cCC-ccEEEeecCCccccCCCCCcceecccccccccCccccC---C--CCCCchhhHHHHHHHHHHHHhC
Q 046589 625 DIKASNILL-NED-FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR---A--RKANERDNIYRFGVVLLELVIR 697 (729)
Q Consensus 625 dlk~~nill-~~~-~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~---~--~~~~~~~Dv~s~G~vl~el~tg 697 (729)
|+|.+|||+ +.+ ..+|+||||..+-... ......-+..|.|||... . .......|||.||++++..+||
T Consensus 146 dlK~eNiLif~~df~rvKlcDFG~t~k~g~----tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG 221 (378)
T KOG1345|consen 146 DLKAENILIFDADFYRVKLCDFGLTRKVGT----TVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTG 221 (378)
T ss_pred ccccceEEEecCCccEEEeeecccccccCc----eehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecC
Confidence 999999998 333 5899999998765321 111223345678888543 2 2346778999999999999999
Q ss_pred CCCCCC
Q 046589 698 KQPTGP 703 (729)
Q Consensus 698 ~~p~~~ 703 (729)
+.|++.
T Consensus 222 ~~PWQk 227 (378)
T KOG1345|consen 222 KFPWQK 227 (378)
T ss_pred CCcchh
Confidence 999763
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6e-10 Score=114.76 Aligned_cols=158 Identities=24% Similarity=0.200 Sum_probs=95.2
Q ss_pred CCCCCCcEEECCCCCCCCCCc-ccccCCCCCCEEeccCCcCccc--CCccccCCCCCcEEEeeccCCCccCCccc-cCCC
Q 046589 126 FDLSKLRVLNLSQNLLFGQPS-PQVSNLKRLKMLSLGENQLSGS--LPSQLGVLTWLETLSLCSNSFTGEMPSEL-GDMK 201 (729)
Q Consensus 126 ~~L~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l-~~l~ 201 (729)
.++++|++..|.++....... .....+++++.||||+|-+... +-.-...|++|+.|+|+.|++.....+.. ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 568899999998888765432 3567799999999999987642 22334678889999999998863322221 2456
Q ss_pred CCcEEEccCCCCCCCC-ccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCC--ccccCCCcCCe
Q 046589 202 QLKSLDFSGNGFNGTV-PIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIP--PEISHLKKLSD 278 (729)
Q Consensus 202 ~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~ 278 (729)
+|+.|.|+.|.++... -.....+++|+.|+|..|... .+.......++.|+.|||++|++.. .+ ...+.++.|..
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence 7777777777765321 122344566777777766321 1222333445566666666666542 12 23344444444
Q ss_pred ecccccc
Q 046589 279 HYLGINQ 285 (729)
Q Consensus 279 l~l~~n~ 285 (729)
+.++.+.
T Consensus 276 Lnls~tg 282 (505)
T KOG3207|consen 276 LNLSSTG 282 (505)
T ss_pred hhccccC
Confidence 4444433
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-09 Score=107.40 Aligned_cols=134 Identities=25% Similarity=0.289 Sum_probs=69.8
Q ss_pred hcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCC
Q 046589 326 WLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNL 405 (729)
Q Consensus 326 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 405 (729)
.+..|..|+.++|++|.++ .+..++.-.|.++.|++|+|.+... ..+..+++|+.|||++|
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N---------------- 339 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGN---------------- 339 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccc----------------
Confidence 3344566667777777665 3444555556666666666666521 22444445555555544
Q ss_pred CCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCcc-CchhhhcCCCCCEEe
Q 046589 406 SQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGS-IPEKIADLAQLQFLD 484 (729)
Q Consensus 406 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~Ld 484 (729)
.++ .+-.+-..+-+++.|.|+.|.|.. -..++.+-+|..||+++|+|... --..+++++.|+++.
T Consensus 340 -----------~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 340 -----------LLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred -----------hhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 444 222333344455555555555431 12344455556666666665421 112455666666666
Q ss_pred CCCCcCcc
Q 046589 485 LSYNNLSR 492 (729)
Q Consensus 485 Ls~N~l~~ 492 (729)
|.+|++++
T Consensus 406 L~~NPl~~ 413 (490)
T KOG1259|consen 406 LTGNPLAG 413 (490)
T ss_pred hcCCCccc
Confidence 66666653
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.3e-09 Score=81.57 Aligned_cols=59 Identities=36% Similarity=0.461 Sum_probs=29.4
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccC
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 188 (729)
+|++|++++|+++.+++..|..+++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555555444455555555555555555544444444444455555544443
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.6e-09 Score=80.54 Aligned_cols=61 Identities=33% Similarity=0.505 Sum_probs=40.1
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCC
Q 046589 153 KRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGF 213 (729)
Q Consensus 153 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 213 (729)
++|++|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566777777777655455666667777777777776666666666666666666666653
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-09 Score=116.94 Aligned_cols=127 Identities=33% Similarity=0.396 Sum_probs=59.0
Q ss_pred CCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEc
Q 046589 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDF 208 (729)
Q Consensus 129 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 208 (729)
..++.+++..|.+.. .-..+..+++|..|++.+|+|. .+...+..+.+|++|+|++|.|+... .+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 334444444444433 1122344445555555555554 22222444555555555555554321 2344444555555
Q ss_pred cCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCh-hhhccCCCCCEEEccccccc
Q 046589 209 SGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTV-SLFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 209 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~N~l~ 263 (729)
++|.+.. ...+..+++|+.+++++|.+. .+.. . ...+.+++.+++..|.+.
T Consensus 148 ~~N~i~~--~~~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNLISD--ISGLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCcchh--ccCCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCchh
Confidence 5555541 122333555555555555554 2221 1 245555566666666554
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.2e-10 Score=112.32 Aligned_cols=116 Identities=19% Similarity=0.284 Sum_probs=69.5
Q ss_pred CcCCCCCcEEEecCCCCCCC----CcccccCCCCCcEEEcCCCCCCCCcccccc-ccCCCCCCcEEEcCCCcCcccCCcc
Q 046589 351 VGNCSMLKYIRLSNNKLSGS----IPRELNDSESLVEINLDGNMLSGTIEDVFG-RCTNLSQLEKLDLSSNMLTGRIPKE 425 (729)
Q Consensus 351 l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~ 425 (729)
|...+.|+.+.++.|.|... ....+..+++|++|||.+|.++..-...++ .++.+++|+.|++++|.+...-...
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 34445666666666665421 122355667777777777766532222211 2244556777777777775432222
Q ss_pred c-----CCCCCCCEEEccCCccccc----cCcCccCCCCCCEEEcccccC
Q 046589 426 I-----GNLRSIQILKLNSNFFNGS----IPMRLGDSTSLNILELGNNNL 466 (729)
Q Consensus 426 l-----~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l 466 (729)
+ ...++|+.|.+.+|.|+-. +..++...+.|..|+|++|++
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1 3367888888888887622 234455678888999999988
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-08 Score=96.87 Aligned_cols=99 Identities=16% Similarity=0.360 Sum_probs=71.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCC---CchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA---NERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~---~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
-+.+..+++|++.+++|+ .+=+++-.. ..+..-.+.||+||.+..++- -..+|+|||++++||+.|+.-||
T Consensus 316 ~lns~hvmidedltaris-mad~kfsfq-----e~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpf 389 (448)
T KOG0195|consen 316 YLNSKHVMIDEDLTARIS-MADTKFSFQ-----EVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPF 389 (448)
T ss_pred hcccceEEecchhhhhee-cccceeeee-----ccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhcccccc
Confidence 677788999999999875 322222110 112234567999997765433 35689999999999999999998
Q ss_pred CC--Ccc---------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 702 GP--KFE---------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~--~~~---------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .|+ ...++.-|...||..||.++.||
T Consensus 390 adlspmecgmkialeglrv~ippgis~hm~klm~icmnedpgkrpkfdmiv 440 (448)
T KOG0195|consen 390 ADLSPMECGMKIALEGLRVHIPPGISRHMNKLMNICMNEDPGKRPKFDMIV 440 (448)
T ss_pred ccCCchhhhhhhhhccccccCCCCccHHHHHHHHHHhcCCCCcCCCcceeh
Confidence 62 111 01799999999999999999875
|
|
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.2e-09 Score=116.95 Aligned_cols=112 Identities=18% Similarity=0.341 Sum_probs=90.4
Q ss_pred CceeeeccccccceEecCCccEEEeecCCccccCCC-CC--cceecccccccccCccccCCCCCCch-hhHHHHHHHHHH
Q 046589 618 KTVAVKKDIKASNILLNEDFDAKVLDFGLARLISDC-KS--HISTDVASAISYVPPEYGRARKANER-DNIYRFGVVLLE 693 (729)
Q Consensus 618 ~~~avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~-~~--~~~~~~~~~~~y~ape~~~~~~~~~~-~Dv~s~G~vl~e 693 (729)
.....|||+|+.|+++...+.+||+|||.+...... +. ....+..|+-+|+|||......|+.. .||||.|+|+..
T Consensus 438 ~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~ 517 (601)
T KOG0590|consen 438 SMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYIC 517 (601)
T ss_pred hcCceeccCccccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEE
Confidence 355778999999999999999999999988765422 22 33456788899999999988888665 899999999999
Q ss_pred HHhCCCCCCC---C-----------cch----------------HHHHhhcccCCCCCCCCccccC
Q 046589 694 LVIRKQPTGP---K-----------FED----------------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 694 l~tg~~p~~~---~-----------~~~----------------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|++|+.|+-. . |.. ..++.++++.+|.+|-||++|+
T Consensus 518 m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~ 583 (601)
T KOG0590|consen 518 MILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQIL 583 (601)
T ss_pred EecCCCccccccccccchhhhccccccccccChHHHHHhchhhHHHHHHHHccCChhheecHHHHh
Confidence 9999999642 0 000 0688899999999999999874
|
|
| >PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-08 Score=101.79 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=61.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC--------CCCCchhhHHHHHHHHHHHHh
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA--------RKANERDNIYRFGVVLLELVI 696 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~--------~~~~~~~Dv~s~G~vl~el~t 696 (729)
|++++|++++.+|.+.++||+-...... .......+.+|.|||.... ..++.+.|.|++|+++|.+++
T Consensus 170 di~~~nfll~~~G~v~Lg~F~~~~r~g~----~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC 245 (288)
T PF14531_consen 170 DIKPENFLLDQDGGVFLGDFSSLVRAGT----RYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWC 245 (288)
T ss_dssp T-SGGGEEE-TTS-EEE--GGGEEETTE----EEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHH
T ss_pred ccceeeEEEcCCCCEEEcChHHHeecCc----eeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHH
Confidence 9999999999999999999985443221 1111234467899995532 357899999999999999999
Q ss_pred CCCCCCCC---------cchH--------HHHhhcccCCCCCC
Q 046589 697 RKQPTGPK---------FEDK--------DIVVGCVSDNPIAK 722 (729)
Q Consensus 697 g~~p~~~~---------~~~~--------~l~~~c~~~~p~~R 722 (729)
|+.|++.. |..+ +++...++++|++|
T Consensus 246 ~~lPf~~~~~~~~~~~~f~~C~~~Pe~v~~LI~~lL~~~~~~R 288 (288)
T PF14531_consen 246 GRLPFGLSSPEADPEWDFSRCRDMPEPVQFLIRGLLQRNPEDR 288 (288)
T ss_dssp SS-STCCCGGGSTSGGGGTTSS---HHHHHHHHHHT-SSGGGS
T ss_pred ccCCCCCCCccccccccchhcCCcCHHHHHHHHHHccCCcccC
Confidence 99998841 1110 78888899998887
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-08 Score=115.39 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=74.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc--ee----cccccccccCccccCCC----------C-CCchhhHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI--ST----DVASAISYVPPEYGRAR----------K-ANERDNIYRF 687 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~--~~----~~~~~~~y~ape~~~~~----------~-~~~~~Dv~s~ 687 (729)
|+|++|||++.-.++.++||.--+...-..+.. .+ +...-..|.|||.+..+ . .+.+.||+|.
T Consensus 145 DIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~ 224 (1431)
T KOG1240|consen 145 DIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSA 224 (1431)
T ss_pred ccccceEEEeeechhhhhcccccCCccCCCCCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhh
Confidence 999999999999999999997555432111111 11 11222469999976531 2 5788999999
Q ss_pred HHHHHHHHh-CCCCCCC-------Cc---chH------------HHHhhcccCCCCCCCCcccc
Q 046589 688 GVVLLELVI-RKQPTGP-------KF---EDK------------DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 688 G~vl~el~t-g~~p~~~-------~~---~~~------------~l~~~c~~~~p~~Rp~~~~v 728 (729)
|||+.||++ |++||.+ .. ..+ .++..+++.+|+.|-++++.
T Consensus 225 GCViaELf~Eg~PlF~LSQL~aYr~~~~~~~e~~Le~Ied~~~Rnlil~Mi~rdPs~RlSAedy 288 (1431)
T KOG1240|consen 225 GCVIAELFLEGRPLFTLSQLLAYRSGNADDPEQLLEKIEDVSLRNLILSMIQRDPSKRLSAEDY 288 (1431)
T ss_pred hHHHHHHHhcCCCcccHHHHHhHhccCccCHHHHHHhCcCccHHHHHHHHHccCchhccCHHHH
Confidence 999999977 5666652 11 000 79999999999999999875
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-09 Score=115.54 Aligned_cols=159 Identities=33% Similarity=0.343 Sum_probs=120.2
Q ss_pred CccCCCCCCCcEEECCCCCCCCC---Cc-------------------------ccccCC---CCCCEEeccCCcCcccCC
Q 046589 122 SPLLFDLSKLRVLNLSQNLLFGQ---PS-------------------------PQVSNL---KRLKMLSLGENQLSGSLP 170 (729)
Q Consensus 122 ~~~l~~L~~L~~L~Ls~N~l~~~---~~-------------------------~~~~~l---~~L~~L~Ls~N~l~~~~p 170 (729)
|-.++.+.+|++|.|.++.+... .+ .+|++- -.|...+.++|++. ..-
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 66789999999999999987521 00 111111 14777788888887 666
Q ss_pred ccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCC
Q 046589 171 SQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQ 250 (729)
Q Consensus 171 ~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~ 250 (729)
.++.-++.|+.|||++|+++..- .+..+++|++|||++|.+. .+|..-..-.+|+.|.+++|.++ .+ ..+.+|.
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL--~gie~Lk 254 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL--RGIENLK 254 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh--hhHHhhh
Confidence 77888899999999999998443 7899999999999999998 56654333355999999999987 33 3467899
Q ss_pred CCCEEEcccccccccCC-ccccCCCcCCeecccccccc
Q 046589 251 SLSYLDVSNNLLSGNIP-PEISHLKKLSDHYLGINQFT 287 (729)
Q Consensus 251 ~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~l~~n~l~ 287 (729)
+|+.||+++|-|.+--. .-+..|..|..|+|.+|.+.
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99999999998875321 23455677888999988763
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.6e-09 Score=103.70 Aligned_cols=241 Identities=20% Similarity=0.267 Sum_probs=165.1
Q ss_pred cccccccccCCCcccccccchhhhhccc-eeEEEecccceeeeecccCchhhhhhcccccccchhHHHHHh---cCCcEE
Q 046589 34 AKSVPLDLQNHPMRSKEQFNIKNAIQAF-DFIIFNFNSLMMGKLRLRQPYKTLSRRLGLAIANALKDLEEL---LLRVVY 109 (729)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~---~~~~~~ 109 (729)
..+..+|++.+.+......-+-+.+... .+...+|.++..++.... +..+|+-+... ..+++.
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~E-------------i~e~L~~l~~aL~~~~~L~~ 96 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDE-------------IPEALKMLSKALLGCPKLQK 96 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHH-------------HHHHHHHHHHHHhcCCceeE
Confidence 3456678888877655554454554432 467788888765544422 22233322111 237999
Q ss_pred EEcCCCCCcCcCC----ccCCCCCCCcEEECCCCCCCCCC-------------cccccCCCCCCEEeccCCcCccc----
Q 046589 110 QVLRTQSLKGPVS----PLLFDLSKLRVLNLSQNLLFGQP-------------SPQVSNLKRLKMLSLGENQLSGS---- 168 (729)
Q Consensus 110 l~l~~~~l~~~~~----~~l~~L~~L~~L~Ls~N~l~~~~-------------~~~~~~l~~L~~L~Ls~N~l~~~---- 168 (729)
++||.|.+.-.-+ ..+.+...|+.|.|.+|.+...- ..-..+-+.||++..++|++...
T Consensus 97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH
Confidence 9999998875433 34567889999999999886221 12234567899999999998632
Q ss_pred CCccccCCCCCcEEEeeccCCCc----cCCccccCCCCCcEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCC
Q 046589 169 LPSQLGVLTWLETLSLCSNSFTG----EMPSELGDMKQLKSLDFSGNGFNGT----VPIRLGELTRLQDLDLSDNLLSGS 240 (729)
Q Consensus 169 ~p~~l~~L~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~ 240 (729)
+...|...+.|+.+.++.|.+.. .+..+|..+++|+.|||..|-++.. +.+.+..+++|+.|++++|.++..
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE 256 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence 22346677899999999998852 2234578899999999999998743 445677889999999999998743
Q ss_pred CChhh----hccCCCCCEEEccccccccc----CCccccCCCcCCeecccccccc
Q 046589 241 LTVSL----FTNLQSLSYLDVSNNLLSGN----IPPEISHLKKLSDHYLGINQFT 287 (729)
Q Consensus 241 ~~~~~----~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~l~l~~n~l~ 287 (729)
-.... -...++|++|++.+|.++.. +...+...+.|..|.++.|.+.
T Consensus 257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 257 GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 22111 23468999999999988632 2234456788889999999883
|
|
| >KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.5e-08 Score=111.44 Aligned_cols=105 Identities=20% Similarity=0.324 Sum_probs=81.1
Q ss_pred ceeeeccccccceEecCCccEEEeecCCccccCCCC--------Ccc------eecccccccccCccccCCCCCCchhhH
Q 046589 619 TVAVKKDIKASNILLNEDFDAKVLDFGLARLISDCK--------SHI------STDVASAISYVPPEYGRARKANERDNI 684 (729)
Q Consensus 619 ~~avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~--------~~~------~~~~~~~~~y~ape~~~~~~~~~~~Dv 684 (729)
.-+||||+|+.|.++..-++.|++|||+++...... ... ...+++|+-|+|||+.....|.-.+|+
T Consensus 162 ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdw 241 (1205)
T KOG0606|consen 162 YGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDW 241 (1205)
T ss_pred CCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCCccH
Confidence 336788999999999999999999999887532110 000 113588999999999888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCCC---------------cchH---------HHHhhcccCCCCCCC
Q 046589 685 YRFGVVLLELVIRKQPTGPK---------------FEDK---------DIVVGCVSDNPIAKP 723 (729)
Q Consensus 685 ~s~G~vl~el~tg~~p~~~~---------------~~~~---------~l~~~c~~~~p~~Rp 723 (729)
|++|+|+||.+.|+.||+++ |.+. +++..-+..+|.+|-
T Consensus 242 wamGiIlyeFLVgcvpffGdtpeelfg~visd~i~wpE~dea~p~Ea~dli~~LL~qnp~~Rl 304 (1205)
T KOG0606|consen 242 WAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEEDEALPPEAQDLIEQLLRQNPLCRL 304 (1205)
T ss_pred HHHHHHHHHHheeeeeccCCCHHHHHhhhhhhhccccccCcCCCHHHHHHHHHHHHhChHhhc
Confidence 99999999999999999854 2221 566667777777664
|
|
| >KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.5e-08 Score=103.89 Aligned_cols=112 Identities=22% Similarity=0.471 Sum_probs=82.3
Q ss_pred CCceeeeccccccceEecCCccEEEeecCCccccCCC-CCcceecccccccccCccccCCC-------CCCchhhHHHHH
Q 046589 617 GKTVAVKKDIKASNILLNEDFDAKVLDFGLARLISDC-KSHISTDVASAISYVPPEYGRAR-------KANERDNIYRFG 688 (729)
Q Consensus 617 ~~~~avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~-~~~~~~~~~~~~~y~ape~~~~~-------~~~~~~Dv~s~G 688 (729)
..++..|..+++.|.++|....+|++|||+....... .........-..=|.|||..... ..+.++||||||
T Consensus 66 ~s~i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ 145 (484)
T KOG1023|consen 66 NSPIGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFG 145 (484)
T ss_pred cCcceeeeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHH
Confidence 3455588899999999999999999999998876420 01111111223447999966542 146779999999
Q ss_pred HHHHHHHhCCCCCCC---Ccc----------------------h-H------HHHhhcccCCCCCCCCcccc
Q 046589 689 VVLLELVIRKQPTGP---KFE----------------------D-K------DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 689 ~vl~el~tg~~p~~~---~~~----------------------~-~------~l~~~c~~~~p~~Rp~~~~v 728 (729)
++++|+++.+.|++. ... . + .++..||..+|+.||+++.|
T Consensus 146 ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P~~rPs~~~i 217 (484)
T KOG1023|consen 146 IIMYEILFRSGPFDLRNLVEDPDEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEIPEKRPSIEQI 217 (484)
T ss_pred HHHHHHHhccCccccccccCChHHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccChhhCccHHHH
Confidence 999999999999872 000 0 0 68889999999999999875
|
|
| >KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-07 Score=98.89 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=52.9
Q ss_pred CCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 635 EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 635 ~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
.+..+||+|||=|..... -.+.-..|+-|+|||..-+..|++.+|||||+|+.+||+||---|+
T Consensus 389 ~di~vKIaDlGNACW~~k----hFT~DIQTRQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFe 452 (590)
T KOG1290|consen 389 CDIRVKIADLGNACWVHK----HFTEDIQTRQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFE 452 (590)
T ss_pred cceeEEEeeccchhhhhh----hhchhhhhhhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeec
Confidence 456899999997766432 1234567889999999999999999999999999999999987766
|
|
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.9e-08 Score=105.84 Aligned_cols=81 Identities=27% Similarity=0.323 Sum_probs=68.7
Q ss_pred CCCceeeeccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHH
Q 046589 616 DGKTVAVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELV 695 (729)
Q Consensus 616 ~~~~~avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~ 695 (729)
..+..+++||+|++||+++.+|++++.|||+++.....+. .+|+.-|||||... .....+|+||||++++||+
T Consensus 113 lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~-----~cgt~eymApEI~~--gh~~a~D~ws~gvl~fell 185 (612)
T KOG0603|consen 113 LHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKI-----ACGTYEYRAPEIIN--GHLSAADWWSFGVLAFELL 185 (612)
T ss_pred cchhHHHHhcccccceeecccCccccCCchhhhHhHhhhh-----cccchhhhhhHhhh--ccCCcccchhhhhhHHHHh
Confidence 4456788999999999999999999999999988654222 27789999999876 4466789999999999999
Q ss_pred hCCCCCCC
Q 046589 696 IRKQPTGP 703 (729)
Q Consensus 696 tg~~p~~~ 703 (729)
||-.|+..
T Consensus 186 tg~~pf~~ 193 (612)
T KOG0603|consen 186 TGTLPFGG 193 (612)
T ss_pred hCCCCCch
Confidence 99999875
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.4e-07 Score=94.34 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=37.7
Q ss_pred cc-cccceEecCCccEEEeecCCccccCCCCCcc-------eecccccccccCccccC
Q 046589 625 DI-KASNILLNEDFDAKVLDFGLARLISDCKSHI-------STDVASAISYVPPEYGR 674 (729)
Q Consensus 625 dl-k~~nill~~~~~~kl~dfgl~~~~~~~~~~~-------~~~~~~~~~y~ape~~~ 674 (729)
|+ ||+||+++.++.+|++|||+|+......... .+...+++.|+|||+..
T Consensus 136 DL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~ 193 (365)
T PRK09188 136 DLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALT 193 (365)
T ss_pred CCCCcceEEEcCCCCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcccCC
Confidence 99 9999999999999999999999765322111 12345667789999764
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.9e-08 Score=107.20 Aligned_cols=102 Identities=28% Similarity=0.405 Sum_probs=62.6
Q ss_pred CcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCch-hhhcCCCCCEEeCC
Q 046589 408 LEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPE-KIADLAQLQFLDLS 486 (729)
Q Consensus 408 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~LdLs 486 (729)
|...+.++|.+. .+-.++.-++.|+.|+|++|+++..- .+..++.|+.|||++|.++ .+|. ....+ .|+.|.++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 555666777766 34556666777777777777776322 5566777777777777776 3443 22233 37777777
Q ss_pred CCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcc
Q 046589 487 YNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSG 528 (729)
Q Consensus 487 ~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g 528 (729)
+|.++. +.++..+.+|+.||+|+|-+++
T Consensus 241 nN~l~t--------------L~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 241 NNALTT--------------LRGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred ccHHHh--------------hhhHHhhhhhhccchhHhhhhc
Confidence 776652 2233355666677777776653
|
|
| >COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-06 Score=92.02 Aligned_cols=83 Identities=33% Similarity=0.521 Sum_probs=68.8
Q ss_pred eeeccccccceEecCCc-cEEEeecCCccccCCCCCc-----ceecccccccccCccccCC---CCCCchhhHHHHHHHH
Q 046589 621 AVKKDIKASNILLNEDF-DAKVLDFGLARLISDCKSH-----ISTDVASAISYVPPEYGRA---RKANERDNIYRFGVVL 691 (729)
Q Consensus 621 avk~dlk~~nill~~~~-~~kl~dfgl~~~~~~~~~~-----~~~~~~~~~~y~ape~~~~---~~~~~~~Dv~s~G~vl 691 (729)
.+|||+||+||+++... .++++|||+++........ ......++.+|+|||.... ..+....|+||+|+++
T Consensus 122 ~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~ 201 (384)
T COG0515 122 IIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITL 201 (384)
T ss_pred eeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHH
Confidence 89999999999999888 7999999999865432221 2345678899999998766 5788899999999999
Q ss_pred HHHHhCCCCCCC
Q 046589 692 LELVIRKQPTGP 703 (729)
Q Consensus 692 ~el~tg~~p~~~ 703 (729)
+++++|+.|+..
T Consensus 202 ~~~~~~~~p~~~ 213 (384)
T COG0515 202 YELLTGLPPFEG 213 (384)
T ss_pred HHHHhCCCCCCC
Confidence 999999999654
|
|
| >KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.2e-06 Score=85.89 Aligned_cols=78 Identities=26% Similarity=0.437 Sum_probs=59.0
Q ss_pred cccccceEecCC-----ccEEEeecCCccccCCCCC--cce----ecccccccccCccccCCCCCCchhhHHHHHHHHHH
Q 046589 625 DIKASNILLNED-----FDAKVLDFGLARLISDCKS--HIS----TDVASAISYVPPEYGRARKANERDNIYRFGVVLLE 693 (729)
Q Consensus 625 dlk~~nill~~~-----~~~kl~dfgl~~~~~~~~~--~~~----~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~e 693 (729)
||||.|+|+... ..+.+.|||||+...+..+ |.. ....||..||+-.--.+..-+.+.|.=|+|=++..
T Consensus 149 DIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmY 228 (449)
T KOG1165|consen 149 DIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMY 228 (449)
T ss_pred ccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhh
Confidence 999999999733 4678999999998764332 111 13578889998663334455788999999999888
Q ss_pred HHhCCCCCC
Q 046589 694 LVIRKQPTG 702 (729)
Q Consensus 694 l~tg~~p~~ 702 (729)
.+-|.-|+.
T Consensus 229 FLRGsLPWQ 237 (449)
T KOG1165|consen 229 FLRGSLPWQ 237 (449)
T ss_pred hccCCCccc
Confidence 899999976
|
|
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-06 Score=101.61 Aligned_cols=65 Identities=22% Similarity=0.317 Sum_probs=48.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-CCCCCchhhHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-ARKANERDNIYRFGVV 690 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~v 690 (729)
||||+||+++.++.+||+|||+++....... ......++..|++||... ...-...+++|++|+-
T Consensus 129 DLKP~NILl~~~g~vkL~DFGls~~~~~~~~-~~~~~~~t~~~~~pe~~~~~~~~~~~s~~~s~g~~ 194 (669)
T cd05610 129 DLKPDNMLISNEGHIKLTDFGLSKVTLNREL-NMMDILTTPSMAKPKNDYSRTPGQVLSLISSLGFN 194 (669)
T ss_pred CccHHHEEEcCCCCEEEEeCCCCccccCCcc-cccccccCccccCccccccCCCCceeeeeeecCcC
Confidence 9999999999999999999999987653222 223456788899998432 2333456788888854
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1e-07 Score=83.35 Aligned_cols=89 Identities=28% Similarity=0.430 Sum_probs=51.7
Q ss_pred CCCCCEEeccCCcCcccCCcccc-CCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCee
Q 046589 152 LKRLKMLSLGENQLSGSLPSQLG-VLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDL 230 (729)
Q Consensus 152 l~~L~~L~Ls~N~l~~~~p~~l~-~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 230 (729)
..+|+..+|++|.+. ..|+.|. ..+.+++|+|++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..|.+|..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 344555566666655 3444443 2335666666666665 55666666666666666666665 555555556666666
Q ss_pred eccCCcCCCCCChh
Q 046589 231 DLSDNLLSGSLTVS 244 (729)
Q Consensus 231 ~L~~N~l~~~~~~~ 244 (729)
+..+|.+. .++.+
T Consensus 129 ds~~na~~-eid~d 141 (177)
T KOG4579|consen 129 DSPENARA-EIDVD 141 (177)
T ss_pred cCCCCccc-cCcHH
Confidence 66666554 45533
|
|
| >KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-06 Score=82.39 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=56.2
Q ss_pred cccccceEecCC---ccEEEeecCCccccCCCCC--cc----eecccccccccCccccCCCCCCchhhHHHHHHHHHHHH
Q 046589 625 DIKASNILLNED---FDAKVLDFGLARLISDCKS--HI----STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELV 695 (729)
Q Consensus 625 dlk~~nill~~~---~~~kl~dfgl~~~~~~~~~--~~----~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~ 695 (729)
|+||.|+|..-+ ..+.+.|||+|+-..+..+ |. .....||..|.+-..-.+..-+.+.|+=|.|.++....
T Consensus 136 DIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfn 215 (341)
T KOG1163|consen 136 DIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFN 215 (341)
T ss_pred cCCccceeeccccccceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeee
Confidence 999999998744 4678999999997653221 11 12346777887654333344467899999999998888
Q ss_pred hCCCCCC
Q 046589 696 IRKQPTG 702 (729)
Q Consensus 696 tg~~p~~ 702 (729)
-|.-|+.
T Consensus 216 rG~LPWQ 222 (341)
T KOG1163|consen 216 RGSLPWQ 222 (341)
T ss_pred cCCCccc
Confidence 8998876
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.6e-06 Score=85.50 Aligned_cols=90 Identities=27% Similarity=0.322 Sum_probs=42.4
Q ss_pred cCCCCCCCcEEECCCCCCCCCC-cccc-cCCCCCCEEeccCCcCcc--cCCccccCCCCCcEEEeeccCCCccCCccccC
Q 046589 124 LLFDLSKLRVLNLSQNLLFGQP-SPQV-SNLKRLKMLSLGENQLSG--SLPSQLGVLTWLETLSLCSNSFTGEMPSELGD 199 (729)
Q Consensus 124 ~l~~L~~L~~L~Ls~N~l~~~~-~~~~-~~l~~L~~L~Ls~N~l~~--~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~ 199 (729)
.++.+.-++.|.+.++.|-..- ...| ...+.++.|||.+|.|+. .+-.-+.+++.|++|+|+.|.+...+-..-..
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence 3444444555555555543221 1122 234567777777777653 12222345556666666666555322211123
Q ss_pred CCCCcEEEccCCCC
Q 046589 200 MKQLKSLDFSGNGF 213 (729)
Q Consensus 200 l~~L~~L~Ls~N~l 213 (729)
+.+|+.|-|.+..+
T Consensus 120 ~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGL 133 (418)
T ss_pred ccceEEEEEcCCCC
Confidence 34555555544443
|
|
| >KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=2e-05 Score=83.67 Aligned_cols=78 Identities=24% Similarity=0.287 Sum_probs=60.0
Q ss_pred cccccceEecCC-----ccEEEeecCCcc--ccCCCCCc--c-----eecccccccccCccccCCCCCCchhhHHHHHHH
Q 046589 625 DIKASNILLNED-----FDAKVLDFGLAR--LISDCKSH--I-----STDVASAISYVPPEYGRARKANERDNIYRFGVV 690 (729)
Q Consensus 625 dlk~~nill~~~-----~~~kl~dfgl~~--~~~~~~~~--~-----~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~v 690 (729)
|+||.|++++.. ..+.+.|||+|+ ........ . .....||..|.++..-.....+.+.|+||++.+
T Consensus 147 DiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~ 226 (322)
T KOG1164|consen 147 DIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYM 226 (322)
T ss_pred CcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHH
Confidence 999999999854 468999999998 32211110 1 112348889999887667777899999999999
Q ss_pred HHHHHhCCCCCC
Q 046589 691 LLELVIRKQPTG 702 (729)
Q Consensus 691 l~el~tg~~p~~ 702 (729)
+.|+..|..|+.
T Consensus 227 l~el~~g~LPW~ 238 (322)
T KOG1164|consen 227 LLELLKGSLPWE 238 (322)
T ss_pred HHHHhcCCCCCc
Confidence 999999998854
|
|
| >KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.8e-05 Score=92.23 Aligned_cols=108 Identities=25% Similarity=0.337 Sum_probs=89.1
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
..|+....+|.|+||+||+|...+|+.||+|.
T Consensus 698 ~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey~~ 777 (974)
T KOG1166|consen 698 EKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSEYSP 777 (974)
T ss_pred eeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHccCCcceeeeeccc
Confidence 78889999999999999999999999999996
Q ss_pred -----------------------------------------cccccceEec-------CCccEEEeecCCccccCCCC-C
Q 046589 625 -----------------------------------------DIKASNILLN-------EDFDAKVLDFGLARLISDCK-S 655 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~-------~~~~~kl~dfgl~~~~~~~~-~ 655 (729)
||||.|.+|. ...-.+++|||-+-.+.--. .
T Consensus 778 ~Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~ 857 (974)
T KOG1166|consen 778 YGTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDG 857 (974)
T ss_pred cccHHHhhccCCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCCC
Confidence 9999999994 22456999999887654111 1
Q ss_pred cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 656 HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 656 ~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
..-...++|-++.++|+..+.+-+-++|-|.++.+++-|+-|+..
T Consensus 858 ~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~ 902 (974)
T KOG1166|consen 858 TKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYM 902 (974)
T ss_pred cEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHH
Confidence 233456777788999998888888899999999999999988754
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=5e-07 Score=79.08 Aligned_cols=86 Identities=29% Similarity=0.294 Sum_probs=52.3
Q ss_pred CCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEE
Q 046589 404 NLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFL 483 (729)
Q Consensus 404 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 483 (729)
....|...+|++|.+....+..-..++.+++|++++|+|. .+|.++..++.|+.|+++.|.+. ..|..+..+.++..|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 3344555666666665332222233446666666666666 56666666777777777777765 556666666677777
Q ss_pred eCCCCcCc
Q 046589 484 DLSYNNLS 491 (729)
Q Consensus 484 dLs~N~l~ 491 (729)
|..+|.+.
T Consensus 129 ds~~na~~ 136 (177)
T KOG4579|consen 129 DSPENARA 136 (177)
T ss_pred cCCCCccc
Confidence 77766654
|
|
| >KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.2e-05 Score=80.61 Aligned_cols=108 Identities=20% Similarity=0.299 Sum_probs=74.3
Q ss_pred ceeeeccccccceEec--CCc--cEEEeecCCccccCCC----CCccee-cccccccccCccccCCC--C---C-Cchhh
Q 046589 619 TVAVKKDIKASNILLN--EDF--DAKVLDFGLARLISDC----KSHIST-DVASAISYVPPEYGRAR--K---A-NERDN 683 (729)
Q Consensus 619 ~~avk~dlk~~nill~--~~~--~~kl~dfgl~~~~~~~----~~~~~~-~~~~~~~y~ape~~~~~--~---~-~~~~D 683 (729)
.-+.|||+|+.|||+. +|. +..|+|||++---... ...... ..+|-...||||.+... + . -.|+|
T Consensus 360 hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD 439 (598)
T KOG4158|consen 360 HGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGPNAVVNYEKAD 439 (598)
T ss_pred ccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCCCCceeeccchhh
Confidence 3466899999999984 554 4579999965321100 000011 23445567999976431 1 1 36899
Q ss_pred HHHHHHHHHHHHhCCCCCCC--Ccc-------hH--------------HHHhhcccCCCCCCCCcc
Q 046589 684 IYRFGVVLLELVIRKQPTGP--KFE-------DK--------------DIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 684 v~s~G~vl~el~tg~~p~~~--~~~-------~~--------------~l~~~c~~~~p~~Rp~~~ 726 (729)
.|+.|.+-||+.+..-||+. ++. +. +++..-++++|+.||+.+
T Consensus 440 ~WA~GalaYEIfg~~NPFY~rGem~L~~r~Yqe~qLPalp~~vpp~~rqlV~~lL~r~pskRvsp~ 505 (598)
T KOG4158|consen 440 TWAAGALAYEIFGRSNPFYKRGEMLLDTRTYQESQLPALPSRVPPVARQLVFDLLKRDPSKRVSPN 505 (598)
T ss_pred hhhhhhhHHHHhccCCcccccchheechhhhhhhhCCCCcccCChHHHHHHHHHhcCCccccCCcc
Confidence 99999999999999999983 111 11 789999999999999864
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.4e-07 Score=92.82 Aligned_cols=86 Identities=21% Similarity=0.250 Sum_probs=54.2
Q ss_pred CCcEEEeeccCCCc-cCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCc-CCCCCChhhhccCCCCCEE
Q 046589 178 WLETLSLCSNSFTG-EMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNL-LSGSLTVSLFTNLQSLSYL 255 (729)
Q Consensus 178 ~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L 255 (729)
.||+|||++..++. .+-.-+..+.+|+.|.|.++++...+...+.+-.+|+.|+|+.+. ++..-..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46667776666652 222335567777777777777777676777777777777777542 3211112345677777788
Q ss_pred Eccccccc
Q 046589 256 DVSNNLLS 263 (729)
Q Consensus 256 ~Ls~N~l~ 263 (729)
+++++.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 88777654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.1e-05 Score=55.91 Aligned_cols=34 Identities=44% Similarity=0.646 Sum_probs=12.1
Q ss_pred CCEEeccCCcCcccCCccccCCCCCcEEEeeccCC
Q 046589 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSF 189 (729)
Q Consensus 155 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l 189 (729)
|++|++++|+|+ .+|..++++++|++|++++|++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 333444444433 2233333333333333333333
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.67 E-value=3.1e-05 Score=55.06 Aligned_cols=36 Identities=36% Similarity=0.640 Sum_probs=19.5
Q ss_pred CCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCC
Q 046589 178 WLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFN 214 (729)
Q Consensus 178 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 214 (729)
+|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666665 34444556666666666666554
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=8e-07 Score=87.65 Aligned_cols=177 Identities=20% Similarity=0.160 Sum_probs=104.8
Q ss_pred CCcEEEEcCCCCCcCc-CCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCc-Cccc-CCccccCCCCCcE
Q 046589 105 LRVVYQVLRTQSLKGP-VSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQ-LSGS-LPSQLGVLTWLET 181 (729)
Q Consensus 105 ~~~~~l~l~~~~l~~~-~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-~p~~l~~L~~L~~ 181 (729)
++++++||+...++-. +.-.+...++|+.|.|.++++...+...+..-.+|+.|||+.+. ++.. ..--+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3577777777666532 33455667788888888888877666677777788888888765 3311 1112456777888
Q ss_pred EEeeccCCCccCCcc-ccC-CCCCcEEEccCCCCC---CCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEE
Q 046589 182 LSLCSNSFTGEMPSE-LGD-MKQLKSLDFSGNGFN---GTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLD 256 (729)
Q Consensus 182 L~Ls~N~l~~~~p~~-l~~-l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 256 (729)
|+|+.|.++...-.. +.. -.+|+.|+|++..-. ..+..-....++|.+|||++|..-..--...|-+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 888888765332111 111 135666777665321 111111245678888888876432121124456777888888
Q ss_pred cccccccccCCcc---ccCCCcCCeecccc
Q 046589 257 VSNNLLSGNIPPE---ISHLKKLSDHYLGI 283 (729)
Q Consensus 257 Ls~N~l~~~~p~~---l~~l~~L~~l~l~~ 283 (729)
++.+. +.+|.. +...+.|.+|+..+
T Consensus 345 lsRCY--~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 345 LSRCY--DIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhhhc--CCChHHeeeeccCcceEEEEecc
Confidence 87775 244543 44556666666543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.1e-06 Score=80.72 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=27.7
Q ss_pred cccccCCceeeccCCcceeecc-cccccccccccccCCcccccC
Q 046589 549 LGHLSCSVKLNLSGNKLSVLVP-TSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 549 ~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~g 591 (729)
+...+.+.-|+|+.|+|..-.. +++..++.|..|.+++|++..
T Consensus 220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 3344555567788777764322 456667777777888887653
|
|
| >KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.60 E-value=2e-05 Score=89.66 Aligned_cols=109 Identities=24% Similarity=0.353 Sum_probs=85.1
Q ss_pred eeeeccccccceEecCCc-cEEEeecCCccccCC-CCCcce-ecccc-cccccCccccCC-CCCCchhhHHHHHHHHHHH
Q 046589 620 VAVKKDIKASNILLNEDF-DAKVLDFGLARLISD-CKSHIS-TDVAS-AISYVPPEYGRA-RKANERDNIYRFGVVLLEL 694 (729)
Q Consensus 620 ~avk~dlk~~nill~~~~-~~kl~dfgl~~~~~~-~~~~~~-~~~~~-~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el 694 (729)
-..|+|+||+|.+++..+ ..+++|||+|..... .+.... ....+ +..|+|||...+ +......|+||.|+++..+
T Consensus 144 ~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~ 223 (601)
T KOG0590|consen 144 GVTHRDIKPSNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAM 223 (601)
T ss_pred ccccCCCCCccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCccccccccccccc
Confidence 366899999999999988 999999999987664 333222 24466 889999998776 4557789999999999999
Q ss_pred HhCCCCCCC---------Ccch-----------------HHHHhhcccCCCCCCCCcccc
Q 046589 695 VIRKQPTGP---------KFED-----------------KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 695 ~tg~~p~~~---------~~~~-----------------~~l~~~c~~~~p~~Rp~~~~v 728 (729)
++|..|.+- .|.. ..+..+++..+|+.|.+.+++
T Consensus 224 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~ 283 (601)
T KOG0590|consen 224 LTGELPWDFPSRKDGRYSSWKSNKGRFTQLPWNSISDQAHDLLHKILKENPSNRLSIEEL 283 (601)
T ss_pred ccCCCCccccccccccceeecccccccccCccccCChhhhhcccccccCCchhccccccc
Confidence 999999651 1111 157778888899999998875
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00016 Score=67.99 Aligned_cols=104 Identities=25% Similarity=0.245 Sum_probs=55.9
Q ss_pred CCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCc-cccCCCCCCCeeec
Q 046589 154 RLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVP-IRLGELTRLQDLDL 232 (729)
Q Consensus 154 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L 232 (729)
+...+||++|.+.. -+.|..+..|.+|.|++|+|+.+-|.--.-+++|+.|.|.+|.+..... ..+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44556666666531 2235556666666666666665544444445566666666666542211 12455566666666
Q ss_pred cCCcCCCCCC--hhhhccCCCCCEEEccc
Q 046589 233 SDNLLSGSLT--VSLFTNLQSLSYLDVSN 259 (729)
Q Consensus 233 ~~N~l~~~~~--~~~~~~l~~L~~L~Ls~ 259 (729)
-+|..+..-. ...+..+++|++||...
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 6666542111 12345666777776544
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00027 Score=75.26 Aligned_cols=131 Identities=14% Similarity=0.165 Sum_probs=62.4
Q ss_pred CCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCC-cCcccCCccccCCCCCcEEE
Q 046589 105 LRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGEN-QLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 105 ~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~L~~L~~L~ 183 (729)
..+..|+++.+.++ .+|. -..+|++|++++|.-....|..+ .++|+.|++++| .+. .+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence 44666777766555 2331 11257777776644333333333 236777777776 443 3443 355566
Q ss_pred eeccCCC--ccCCccccCCCCCcEEEccCCCCCCCCccccC-CC-CCCCeeeccCCcCCCCCChhhhccCCCCCEEEccc
Q 046589 184 LCSNSFT--GEMPSELGDMKQLKSLDFSGNGFNGTVPIRLG-EL-TRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSN 259 (729)
Q Consensus 184 Ls~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l-~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 259 (729)
++.+... +.+|. +|+.|.+.+++.. .+..+. .+ ++|++|++++|... .+| ..+. .+|+.|+++.
T Consensus 119 L~~n~~~~L~~LPs------sLk~L~I~~~n~~--~~~~lp~~LPsSLk~L~Is~c~~i-~LP-~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 119 IKGSATDSIKNVPN------GLTSLSINSYNPE--NQARIDNLISPSLKTLSLTGCSNI-ILP-EKLP--ESLQSITLHI 186 (426)
T ss_pred eCCCCCcccccCcc------hHhheeccccccc--cccccccccCCcccEEEecCCCcc-cCc-cccc--ccCcEEEecc
Confidence 6555432 12222 3555555332211 000011 12 45777777666543 222 1111 4566666665
Q ss_pred c
Q 046589 260 N 260 (729)
Q Consensus 260 N 260 (729)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00016 Score=67.97 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=88.0
Q ss_pred CCEEeccCCcCcccCCcccc-CCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeecc
Q 046589 155 LKMLSLGENQLSGSLPSQLG-VLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLS 233 (729)
Q Consensus 155 L~~L~Ls~N~l~~~~p~~l~-~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 233 (729)
=+.++|.+.++. .+-. ++ -+.+...+||++|.+. .+ ..|..++.|++|.|.+|.|+.+-|.--.-+++|+.|.|.
T Consensus 21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc-chhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 345566665543 1111 22 2346779999999996 22 467889999999999999997666655566889999999
Q ss_pred CCcCCCCCChhhhccCCCCCEEEcccccccccC---CccccCCCcCCeeccc
Q 046589 234 DNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNI---PPEISHLKKLSDHYLG 282 (729)
Q Consensus 234 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~l~l~ 282 (729)
+|.|...-...-+..++.|++|.+-+|.++..- --.+..+++|+.++..
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 999874333455778899999999999876422 1245667777777654
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.46 E-value=1.6e-05 Score=77.67 Aligned_cols=119 Identities=20% Similarity=0.177 Sum_probs=69.6
Q ss_pred CCCCCcEEEcCCCcCcccCC----cccCCCCCCCEEEccCCccccc-----cCcCccCCCCCCEEEcccccCCccC----
Q 046589 404 NLSQLEKLDLSSNMLTGRIP----KEIGNLRSIQILKLNSNFFNGS-----IPMRLGDSTSLNILELGNNNLNGSI---- 470 (729)
Q Consensus 404 ~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~---- 470 (729)
+-+.|+..+...|.+..-.. ..+..-..|+.+.+..|.|... +...+..+.+|++|||.+|.++..-
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 34567788888887753211 1223335788888888876522 1123445678888888888886433
Q ss_pred chhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcc
Q 046589 471 PEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSG 528 (729)
Q Consensus 471 p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g 528 (729)
...+..++.|+.|.+.++.++..-.......|... ..++|..|-..+|...+
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~------~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEK------FVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhh------cCCCccccccchhhhcC
Confidence 23456677788888888887653333322222222 23455556666665543
|
|
| >PRK10359 lipopolysaccharide core biosynthesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=5.8e-05 Score=74.68 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=38.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLEL 694 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el 694 (729)
|++|+||+++.++ ++++|||..+....+.. . ..+.....+..++|+|++||.+.-.
T Consensus 160 Dikp~Nili~~~g-i~liDfg~~~~~~e~~a---------~----d~~vler~y~~~~di~~lg~~~~~~ 215 (232)
T PRK10359 160 DPHKGNFIVSKNG-LRIIDLSGKRCTAQRKA---------K----DRIDLERHYGIKNEIKDLGYYLLIY 215 (232)
T ss_pred CCChHHEEEeCCC-EEEEECCCcccccchhh---------H----HHHHHHhHhcccccccceeEeehHH
Confidence 9999999999888 99999997755321100 0 0122233455789999999987543
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00061 Score=72.56 Aligned_cols=134 Identities=19% Similarity=0.280 Sum_probs=74.8
Q ss_pred CCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCC-CCCCCccccccccCCCCC
Q 046589 329 KWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGN-MLSGTIEDVFGRCTNLSQ 407 (729)
Q Consensus 329 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~ 407 (729)
.+.+++.|++++|.+. .+|. -.++|+.|.++++.--..+|..+ ..+|+.|++++| .+.. +| .+
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-LP---------~s 113 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-LP---------ES 113 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-cc---------cc
Confidence 3567778888887665 3341 12368888887744333455444 357888888877 4432 11 24
Q ss_pred CcEEEcCCCcCcc--cCCcccCCCCCCCEEEccCCccc--cccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEE
Q 046589 408 LEKLDLSSNMLTG--RIPKEIGNLRSIQILKLNSNFFN--GSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFL 483 (729)
Q Consensus 408 L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 483 (729)
|+.|+++.|.... .+|. +|+.|.+.+++.. ..+|.. -.++|++|++++|... ..|..+. .+|+.|
T Consensus 114 Le~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred cceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 6667777665431 2232 4566666443211 011111 1257888888887765 3444433 477888
Q ss_pred eCCCCc
Q 046589 484 DLSYNN 489 (729)
Q Consensus 484 dLs~N~ 489 (729)
+++.|.
T Consensus 183 ~ls~n~ 188 (426)
T PRK15386 183 TLHIEQ 188 (426)
T ss_pred Eecccc
Confidence 887763
|
|
| >PRK12274 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00025 Score=68.78 Aligned_cols=82 Identities=20% Similarity=0.195 Sum_probs=55.1
Q ss_pred eeeccc-cccceEecCCccEEEeecCCccccCCCCCc----cee--------cccccccccCcccc-CCCCCC-chhhHH
Q 046589 621 AVKKDI-KASNILLNEDFDAKVLDFGLARLISDCKSH----IST--------DVASAISYVPPEYG-RARKAN-ERDNIY 685 (729)
Q Consensus 621 avk~dl-k~~nill~~~~~~kl~dfgl~~~~~~~~~~----~~~--------~~~~~~~y~ape~~-~~~~~~-~~~Dv~ 685 (729)
+||+|+ |+.||+++.++.++|+|||+|......... ... ....+..|+.|+-. .-...+ ...+++
T Consensus 112 IvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~ 191 (218)
T PRK12274 112 VAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWF 191 (218)
T ss_pred CccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHH
Confidence 889999 799999999999999999999864431110 000 01223344455421 112223 456889
Q ss_pred HHHHHHHHHHhCCCCCC
Q 046589 686 RFGVVLLELVIRKQPTG 702 (729)
Q Consensus 686 s~G~vl~el~tg~~p~~ 702 (729)
+-|+-+|.++|++-|..
T Consensus 192 ~~g~~~~~~~~~~~~~~ 208 (218)
T PRK12274 192 ATGKPVYRFVTRRVLHW 208 (218)
T ss_pred HhcchHHHHHhccCCcc
Confidence 99999999999998864
|
|
| >cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00056 Score=66.97 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=24.3
Q ss_pred cccccceEecCCccEEEeecCCccccC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLIS 651 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~ 651 (729)
|++|.||++++++.++++|||++....
T Consensus 150 Dl~p~Nill~~~~~~~liDfg~~~~~~ 176 (198)
T cd05144 150 DLSEFNILVDDDEKIYIIDWPQMVSTD 176 (198)
T ss_pred CCCcccEEEcCCCcEEEEECCccccCC
Confidence 999999999999999999999885543
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00024 Score=69.74 Aligned_cols=216 Identities=21% Similarity=0.207 Sum_probs=125.7
Q ss_pred ccccccccCCCcccccccchhhhhccce-eEEEecccceeeeecccCchhhhhhcccccccchhHHH-HHh--cCCcEEE
Q 046589 35 KSVPLDLQNHPMRSKEQFNIKNAIQAFD-FIIFNFNSLMMGKLRLRQPYKTLSRRLGLAIANALKDL-EEL--LLRVVYQ 110 (729)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l-~~~--~~~~~~l 110 (729)
..+++||+.|-........+-+.|.+-+ +.+.+|.....++.. ..+..+|.-+ ..+ -.++...
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~k-------------de~~~~L~~Ll~aLlkcp~l~~v 97 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDK-------------DELYSNLVMLLKALLKCPRLQKV 97 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccH-------------HHHHHHHHHHHHHHhcCCcceee
Confidence 4567888887665554444444444433 455566554322221 1111222221 111 2467888
Q ss_pred EcCCCCCcCcCCcc----CCCCCCCcEEECCCCCCCCCCccc-------------ccCCCCCCEEeccCCcCcccCCcc-
Q 046589 111 VLRTQSLKGPVSPL----LFDLSKLRVLNLSQNLLFGQPSPQ-------------VSNLKRLKMLSLGENQLSGSLPSQ- 172 (729)
Q Consensus 111 ~l~~~~l~~~~~~~----l~~L~~L~~L~Ls~N~l~~~~~~~-------------~~~l~~L~~L~Ls~N~l~~~~p~~- 172 (729)
+||.|.+....|+. +++-+.|+.|.|++|.+..+-..- ..+-+.|++.+...|++. ..|..
T Consensus 98 ~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~ 176 (388)
T COG5238 98 DLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKEL 176 (388)
T ss_pred eccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHH
Confidence 88888887666653 455678888888888764321111 224567888888888875 33332
Q ss_pred ----ccCCCCCcEEEeeccCCCcc-----CCccccCCCCCcEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCC
Q 046589 173 ----LGVLTWLETLSLCSNSFTGE-----MPSELGDMKQLKSLDFSGNGFNGT----VPIRLGELTRLQDLDLSDNLLSG 239 (729)
Q Consensus 173 ----l~~L~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~ 239 (729)
+..-..|+++.+..|.|.-. +-..+..+++|+.|||..|.++.. +...++..+.|+.|.+..|-++.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 22335788888888876411 111244677888888888887632 33445666778888888887764
Q ss_pred CCChhhhc-----cCCCCCEEEcccccccc
Q 046589 240 SLTVSLFT-----NLQSLSYLDVSNNLLSG 264 (729)
Q Consensus 240 ~~~~~~~~-----~l~~L~~L~Ls~N~l~~ 264 (729)
.-..+.+. ..++|..|-..+|...+
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 33333332 34667777777776554
|
|
| >cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00047 Score=67.02 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=25.6
Q ss_pred eeeccccccceEecCCccEEEeecCCccccC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLIS 651 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~ 651 (729)
.+|+|+||.||+++ ++.++++|||+++...
T Consensus 139 ivHrDlkP~NIll~-~~~~~liDFG~a~~~~ 168 (190)
T cd05145 139 LVHGDLSEYNILYH-DGKPYIIDVSQAVELD 168 (190)
T ss_pred EecCCCChhhEEEE-CCCEEEEEcccceecC
Confidence 45559999999998 8899999999987654
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro |
| >cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00057 Score=66.38 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=24.2
Q ss_pred eeeccccccceEecCCccEEEeecCCcccc
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLI 650 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~ 650 (729)
+||+|+||+||+++ ++.++++|||+|...
T Consensus 139 iiHrDlkP~NIli~-~~~v~LiDFG~a~~~ 167 (190)
T cd05147 139 LVHADLSEYNLLYH-DGKLYIIDVSQSVEH 167 (190)
T ss_pred cccCCCCHHHEEEE-CCcEEEEEccccccC
Confidence 55669999999998 478999999988653
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00029 Score=81.31 Aligned_cols=113 Identities=23% Similarity=0.362 Sum_probs=69.1
Q ss_pred CCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCcccc-ccCcCccCCCCC
Q 046589 378 SESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG-SIPMRLGDSTSL 456 (729)
Q Consensus 378 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L 456 (729)
+|+|+.|.+.+-.+.. .+...-+.++++|..||+|+.+++.. ..++.+++|+.|.+.+=.+.. ..-..+-.+++|
T Consensus 147 LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred CcccceEEecCceecc--hhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 4666666666544432 22233456677777788887777633 567777777777777655542 112245567788
Q ss_pred CEEEcccccCCccC--c----hhhhcCCCCCEEeCCCCcCcccc
Q 046589 457 NILELGNNNLNGSI--P----EKIADLAQLQFLDLSYNNLSRPI 494 (729)
Q Consensus 457 ~~L~Ls~N~l~~~~--p----~~l~~l~~L~~LdLs~N~l~~~~ 494 (729)
+.||+|..+..... . +.-..++.|+.||.|+..+...+
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 88888776654322 1 22245778888888887776543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00018 Score=82.91 Aligned_cols=109 Identities=21% Similarity=0.186 Sum_probs=67.2
Q ss_pred cCCcEEEEcCCCCCcCc-CCc-cCCCCCCCcEEECCCCCCCCC-CcccccCCCCCCEEeccCCcCcccCCccccCCCCCc
Q 046589 104 LLRVVYQVLRTQSLKGP-VSP-LLFDLSKLRVLNLSQNLLFGQ-PSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLE 180 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~-~~~-~l~~L~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~ 180 (729)
..++++|++++...... -|. .-.-||.|+.|.+++=.+... ......++++|+.||+|+++++.. ..++.|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 44577778777543321 122 223578888888877655432 122335678888888888887633 5677788888
Q ss_pred EEEeeccCCCc-cCCccccCCCCCcEEEccCCCCC
Q 046589 181 TLSLCSNSFTG-EMPSELGDMKQLKSLDFSGNGFN 214 (729)
Q Consensus 181 ~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~ 214 (729)
+|.+.+=.+.. ..-..+.+|++|+.||+|.....
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 87776555542 11124567777777777766544
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00062 Score=66.91 Aligned_cols=58 Identities=34% Similarity=0.405 Sum_probs=26.3
Q ss_pred cCCCCCcEEEccCCCCCCCCcc---ccCCCCCCCeeeccCCcCCCCC--ChhhhccCCCCCEEEc
Q 046589 198 GDMKQLKSLDFSGNGFNGTVPI---RLGELTRLQDLDLSDNLLSGSL--TVSLFTNLQSLSYLDV 257 (729)
Q Consensus 198 ~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~~--~~~~~~~l~~L~~L~L 257 (729)
..+++|++|+|++|++.. +. .+..+.+|..|++.+|..+..- -...|.-+++|++||-
T Consensus 88 e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 88 EKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 333444555555554431 11 1233344555555555443211 1234566666766653
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0024 Score=57.48 Aligned_cols=105 Identities=14% Similarity=0.250 Sum_probs=42.2
Q ss_pred CCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCc
Q 046589 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLK 204 (729)
Q Consensus 125 l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 204 (729)
+.+.++|+.+.+.. .+..+...+|.++++|+.+++.++ +.......|.+...|+.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444566666553 344444555555555666666554 4433344455555566666543 33333344455555555
Q ss_pred EEEccCCCCCCCCccccCCCCCCCeeeccC
Q 046589 205 SLDFSGNGFNGTVPIRLGELTRLQDLDLSD 234 (729)
Q Consensus 205 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 234 (729)
.+++..+ +.......|.+. +|+.+.+..
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 5555443 332223334443 555555443
|
|
| >KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0012 Score=72.35 Aligned_cols=103 Identities=21% Similarity=0.300 Sum_probs=75.5
Q ss_pred cccccceEecCC-ccEEEeecCCccccCCCCCccee----cccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNED-FDAKVLDFGLARLISDCKSHIST----DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~-~~~kl~dfgl~~~~~~~~~~~~~----~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+|+.||....+ ...+.+|||+...+......... ..-+...|++||... ..++...|+|++|.+..|..++.+
T Consensus 247 ~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~-~l~~~~~di~sl~ev~l~~~l~~~ 325 (524)
T KOG0601|consen 247 DLKPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLN-GLATFASDIFSLGEVILEAILGSH 325 (524)
T ss_pred ccchhheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhc-cccchHhhhcchhhhhHhhHhhcc
Confidence 999999999988 88899999988776543322111 113345699999764 455788999999999999988877
Q ss_pred CCCC----CcchH------------------HHHhhcccCCCCCCCCcccc
Q 046589 700 PTGP----KFEDK------------------DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 700 p~~~----~~~~~------------------~l~~~c~~~~p~~Rp~~~~v 728 (729)
.... .|.+- .+...+++.+|..|++.+.+
T Consensus 326 ~~~~g~~~~W~~~r~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~ 376 (524)
T KOG0601|consen 326 LPSVGKNSSWSQLRQGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQIL 376 (524)
T ss_pred cccCCCCCCccccccccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHH
Confidence 6542 34421 46678888899888887764
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00076 Score=66.30 Aligned_cols=67 Identities=24% Similarity=0.326 Sum_probs=37.1
Q ss_pred ccCCCCCCcEEEcCCC--cCcccCCcccCCCCCCCEEEccCCccccc-cCcCccCCCCCCEEEcccccCC
Q 046589 401 RCTNLSQLEKLDLSSN--MLTGRIPKEIGNLRSIQILKLNSNFFNGS-IPMRLGDSTSLNILELGNNNLN 467 (729)
Q Consensus 401 ~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~ 467 (729)
.+..+++|++|.+|.| .+.+.++.....+++|++|++++|+|... --..+..+.+|..|++.+|.-+
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 3445666777777777 55544555555567777777777776520 0112333445555555555544
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0035 Score=56.43 Aligned_cols=108 Identities=17% Similarity=0.287 Sum_probs=57.3
Q ss_pred cccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCC
Q 046589 146 SPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELT 225 (729)
Q Consensus 146 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 225 (729)
..+|.++++|+.+.+.. .+.......|.+..+|+.+++.++ +...-...|.++++|+.+.+.. .+.......|..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34677777888888774 465555666777777888888764 6545555677777788888765 44333444566677
Q ss_pred CCCeeeccCCcCCCCCChhhhccCCCCCEEEccc
Q 046589 226 RLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSN 259 (729)
Q Consensus 226 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 259 (729)
+|+.+.+..+ +. .++...|.+. +|+.+.+..
T Consensus 82 ~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 7777777554 33 4454556665 666666543
|
|
| >TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0024 Score=70.41 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=25.1
Q ss_pred cccccceEecCCccEEEeecCCccccC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLIS 651 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~ 651 (729)
|++|.||+++.++.+++.|||++....
T Consensus 282 D~hPgNilv~~~g~i~liDfG~~~~l~ 308 (437)
T TIGR01982 282 DLHPGNIFVLKDGKIIALDFGIVGRLS 308 (437)
T ss_pred CCCcccEEECCCCcEEEEeCCCeeECC
Confidence 999999999999999999999997765
|
This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. |
| >cd05119 RIO RIO kinase family, catalytic domain | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0041 Score=60.09 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=24.2
Q ss_pred eeeccccccceEecCCccEEEeecCCcccc
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLI 650 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~ 650 (729)
.+|+|+||+||+++ ++.++++|||.+...
T Consensus 136 ivH~Dl~p~Nili~-~~~~~liDfg~a~~~ 164 (187)
T cd05119 136 LVHGDLSEYNILVD-DGKVYIIDVPQAVEI 164 (187)
T ss_pred cCcCCCChhhEEEE-CCcEEEEECcccccc
Confidence 35559999999999 889999999988654
|
The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct |
| >KOG1266 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0062 Score=61.73 Aligned_cols=113 Identities=16% Similarity=0.279 Sum_probs=75.3
Q ss_pred CCCCceeeeccccccceEecCCccEEEeecCCccccCCCC---Ccce-ecccccccccCccccCCCCCCchhhHHHHHHH
Q 046589 615 PDGKTVAVKKDIKASNILLNEDFDAKVLDFGLARLISDCK---SHIS-TDVASAISYVPPEYGRARKANERDNIYRFGVV 690 (729)
Q Consensus 615 ~~~~~~avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~---~~~~-~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~v 690 (729)
+.-.+.++|.++..+-|.+..++-.|+.- +......... .... ....+..+|.+||++.....+..+|||+||+.
T Consensus 193 hs~~PpiihgnlTc~tifiq~ngLIkig~-~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmc 271 (458)
T KOG1266|consen 193 HSCDPPIIHGNLTCDTIFIQHNGLIKIGS-VAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMC 271 (458)
T ss_pred hccCCccccCCcchhheeecCCceEEecc-cCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHH
Confidence 34457788888888888888777777542 1111111100 0111 12345678999999988888889999999999
Q ss_pred HHHHHhCCCC-CCC--Cc-c---------------hHHHHhhcccCCCCCCCCcccc
Q 046589 691 LLELVIRKQP-TGP--KF-E---------------DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 691 l~el~tg~~p-~~~--~~-~---------------~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.+||..|.-- ... .. + +.+.+..|+..+|..||+|++.
T Consensus 272 AlemailEiq~tnseS~~~~ee~ia~~i~~len~lqr~~i~kcl~~eP~~rp~ar~l 328 (458)
T KOG1266|consen 272 ALEMAILEIQSTNSESKVEVEENIANVIIGLENGLQRGSITKCLEGEPNGRPDARLL 328 (458)
T ss_pred HHHHHHheeccCCCcceeehhhhhhhheeeccCccccCcCcccccCCCCCCcchhhh
Confidence 9998776532 111 01 1 1168889999999999999875
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.00042 Score=68.24 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=17.0
Q ss_pred CCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCc
Q 046589 128 LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLS 166 (729)
Q Consensus 128 L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 166 (729)
+.+.++|+..+|.+..+ .....++.|++|.||-|.|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs 54 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS 54 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc
Confidence 44555555555555432 12233444444444444443
|
|
| >PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0078 Score=67.46 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=25.5
Q ss_pred cccccCCCCCCcceEEEeecCC-CCceeeec
Q 046589 595 FCEKNGIGGGGFGTVFKGTMPD-GKTVAVKK 624 (729)
Q Consensus 595 ~~~~~~ig~g~~~~v~k~~~~~-~~~~avk~ 624 (729)
|+. ..+|+|++|.||+|++.+ |+.||||.
T Consensus 122 fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV 151 (537)
T PRK04750 122 FDI-KPLASASIAQVHFARLKDNGREVVVKV 151 (537)
T ss_pred cCh-hhhcCCCccEEEEEEECCCCCEEEEEE
Confidence 444 689999999999999987 99999995
|
|
| >TIGR03724 arch_bud32 Kae1-associated kinase Bud32 | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.015 Score=56.79 Aligned_cols=26 Identities=35% Similarity=0.632 Sum_probs=23.1
Q ss_pred cccccceEecCCccEEEeecCCccccC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLIS 651 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~ 651 (729)
|++|.||+++ ++.+++.|||+++...
T Consensus 115 Dl~~~Nil~~-~~~~~liDfg~a~~~~ 140 (199)
T TIGR03724 115 DLTTSNIIVR-DDKLYLIDFGLGKYSD 140 (199)
T ss_pred CCCcceEEEE-CCcEEEEECCCCcCCC
Confidence 9999999999 8899999999887643
|
Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine. |
| >PRK14879 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.015 Score=57.36 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=22.4
Q ss_pred cccccceEecCCccEEEeecCCcccc
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLI 650 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~ 650 (729)
|++|.||+++ ++.++++|||+++..
T Consensus 120 Dl~p~Nil~~-~~~~~liDf~~a~~~ 144 (211)
T PRK14879 120 DLTTSNMILS-GGKIYLIDFGLAEFS 144 (211)
T ss_pred CCCcccEEEE-CCCEEEEECCcccCC
Confidence 9999999999 788999999988763
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.0008 Score=66.36 Aligned_cols=63 Identities=30% Similarity=0.339 Sum_probs=27.4
Q ss_pred CCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccc
Q 046589 199 DMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 199 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 263 (729)
+|+.|+.|.||-|.|+..-| +..+++|++|+|..|.|...-....+.++++|+.|.|..|.-.
T Consensus 39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 44444444444444442222 3344445555555554442111233444555555555555443
|
|
| >smart00090 RIO RIO-like kinase | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.016 Score=58.36 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=22.7
Q ss_pred eeccccccceEecCCccEEEeecCCcccc
Q 046589 622 VKKDIKASNILLNEDFDAKVLDFGLARLI 650 (729)
Q Consensus 622 vk~dlk~~nill~~~~~~kl~dfgl~~~~ 650 (729)
+|+|+||+||+++ ++.++++|||.+...
T Consensus 171 iH~Dikp~NIli~-~~~i~LiDFg~a~~~ 198 (237)
T smart00090 171 VHGDLSEYNILVH-DGKVVIIDVSQSVEL 198 (237)
T ss_pred EeCCCChhhEEEE-CCCEEEEEChhhhcc
Confidence 4449999999998 788999999987653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 729 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 4e-41 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 4e-41 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-13 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-05 | ||
| 3tl8_A | 349 | The Avrptob-Bak1 Complex Reveals Two Structurally S | 2e-12 | ||
| 3uim_A | 326 | Structural Basis For The Impact Of Phosphorylation | 3e-12 | ||
| 3ppz_A | 309 | Crystal Structure Of Ctr1 Kinase Domain In Complex | 6e-09 | ||
| 3hgk_A | 327 | Crystal Structure Of Effect Protein Avrptob Complex | 1e-08 | ||
| 2qkw_B | 321 | Structural Basis For Activation Of Plant Immunity B | 1e-08 | ||
| 3p86_A | 309 | Crystal Structure Of Ctr1 Kinase Domain Mutant D676 | 1e-08 | ||
| 2nry_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 2e-08 | ||
| 3q6w_A | 307 | Structure Of Dually-phosphorylated Met Receptor Kin | 3e-08 | ||
| 4gg5_A | 319 | Crystal Structure Of Cmet In Complex With Novel Inh | 4e-08 | ||
| 2g15_A | 318 | Structural Characterization Of Autoinhibited C-Met | 4e-08 | ||
| 2nru_A | 307 | Crystal Structure Of Irak-4 Length = 307 | 4e-08 | ||
| 3q6u_A | 308 | Structure Of The Apo Met Receptor Kinase In The Dua | 4e-08 | ||
| 3i5n_A | 309 | Crystal Structure Of C-Met With Triazolopyridazine | 4e-08 | ||
| 2rfn_A | 310 | X-ray Structure Of C-met With Inhibitor. Length = 3 | 4e-08 | ||
| 2wd1_A | 292 | Human C-Met Kinase In Complex With Azaindole Inhibi | 4e-08 | ||
| 2wgj_A | 306 | X-Ray Structure Of Pf-02341066 Bound To The Kinase | 4e-08 | ||
| 3lq8_A | 302 | Structure Of The Kinase Domain Of C-Met Bound To Xl | 4e-08 | ||
| 3f66_A | 298 | Human C-Met Kinase In Complex With Quinoxaline Inhi | 4e-08 | ||
| 3a4p_A | 319 | Human C-Met Kinase Domain Complexed With 6-Benzylox | 5e-08 | ||
| 3dkc_A | 317 | Sgx Clone 5698a65kfg1h1 Length = 317 | 5e-08 | ||
| 3c1x_A | 373 | Crystal Structure Of The Tyrosine Kinase Domain Of | 5e-08 | ||
| 1r0p_A | 312 | Crystal Structure Of The Tyrosine Kinase Domain Of | 5e-08 | ||
| 3qti_A | 314 | C-Met Kinase In Complex With Nvp-Bvu972 Length = 31 | 5e-08 | ||
| 3cth_A | 314 | Crystal Structure Of The Tyrosine Kinase Domain Of | 5e-08 | ||
| 3dqw_A | 286 | C-Src Kinase Domain Thr338ile Mutant In Complex Wit | 6e-08 | ||
| 2oib_A | 301 | Crystal Structure Of Irak4 Kinase Domain Apo Form L | 7e-08 | ||
| 3dkg_A | 317 | Sgx Clone 5698a109kfg1h1 Length = 317 | 7e-08 | ||
| 1yi6_A | 276 | C-Term Tail Segment Of Human Tyrosine Kinase (258-5 | 7e-08 | ||
| 1yoj_A | 283 | Crystal Structure Of Src Kinase Domain Length = 283 | 7e-08 | ||
| 2oiq_A | 286 | Crystal Structure Of Chicken C-Src Kinase Domain In | 8e-08 | ||
| 3oez_A | 286 | Crystal Structure Of The L317i Mutant Of The Chicke | 8e-08 | ||
| 1yol_A | 283 | Crystal Structure Of Src Kinase Domain In Complex W | 8e-08 | ||
| 1y57_A | 452 | Structure Of Unphosphorylated C-Src In Complex With | 8e-08 | ||
| 1ksw_A | 452 | Structure Of Human C-Src Tyrosine Kinase (Thr338gly | 8e-08 | ||
| 1fmk_A | 452 | Crystal Structure Of Human Tyrosine-Protein Kinase | 8e-08 | ||
| 3svv_A | 286 | Crystal Structure Of T338c C-Src Covalently Bound T | 8e-08 | ||
| 2qq7_A | 286 | Crystal Structure Of Drug Resistant Src Kinase Doma | 8e-08 | ||
| 2hwo_A | 286 | Crystal Structure Of Src Kinase Domain In Complex W | 8e-08 | ||
| 3g6h_A | 286 | Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma | 8e-08 | ||
| 3u4w_A | 275 | Src In Complex With Dna-Templated Macrocyclic Inhib | 8e-08 | ||
| 2h8h_A | 535 | Src Kinase In Complex With A Quinazoline Inhibitor | 9e-08 | ||
| 2o8y_A | 298 | Apo Irak4 Kinase Domain Length = 298 | 9e-08 | ||
| 2bdf_A | 279 | Src Kinase In Complex With Inhibitor Ap23451 Length | 9e-08 | ||
| 3d7u_B | 277 | Structural Basis For The Recognition Of C-Src By It | 1e-07 | ||
| 3geq_A | 286 | Structural Basis For The Chemical Rescue Of Src Kin | 2e-07 | ||
| 4eqm_A | 294 | Structural Analysis Of Staphylococcus Aureus Serine | 2e-07 | ||
| 2ptk_A | 453 | Chicken Src Tyrosine Kinase Length = 453 | 2e-07 | ||
| 3orm_A | 311 | Mycobacterium Tuberculosis Pknb Kinase Domain D76a | 2e-07 | ||
| 1mru_A | 311 | Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob | 2e-07 | ||
| 1o6y_A | 299 | Catalytic Domain Of Pknb Kinase From Mycobacterium | 2e-07 | ||
| 3ori_A | 311 | Mycobacterium Tuberculosis Pknb Kinase Domain L33d | 2e-07 | ||
| 3f61_A | 311 | Crystal Structure Of M. Tuberculosis Pknb Leu33aspV | 2e-07 | ||
| 2dq7_X | 283 | Crystal Structure Of Fyn Kinase Domain Complexed Wi | 3e-07 | ||
| 3f69_A | 311 | Crystal Structure Of The Mycobacterium Tuberculosis | 3e-07 | ||
| 1qpd_A | 279 | Structural Analysis Of The Lymphocyte-specific Kina | 7e-07 | ||
| 2fb8_A | 281 | Structure Of The B-Raf Kinase Domain Bound To Sb-59 | 9e-07 | ||
| 4h58_A | 275 | Braf In Complex With Compound 3 Length = 275 | 9e-07 | ||
| 3q96_A | 282 | B-Raf Kinase Domain In Complex With A Tetrahydronap | 9e-07 | ||
| 1uwh_A | 276 | The Complex Of Wild Type B-Raf And Bay439006 Length | 9e-07 | ||
| 4dbn_A | 284 | Crystal Structure Of The Kinase Domain Of Human B-R | 1e-06 | ||
| 3d4q_A | 307 | Pyrazole-Based Inhibitors Of B-Raf Kinase Length = | 1e-06 | ||
| 3ii5_A | 306 | The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi | 1e-06 | ||
| 3kmm_A | 288 | Structure Of Human Lck Kinase With A Small Molecule | 2e-06 | ||
| 3kxz_A | 287 | The Complex Crystal Structure Of Lck With A Probe M | 2e-06 | ||
| 2zm1_A | 285 | Crystal Structure Of Imidazo Pyrazin 1 Bound To The | 2e-06 | ||
| 1qpe_A | 279 | Structural Analysis Of The Lymphocyte-Specific Kina | 2e-06 | ||
| 2ofu_A | 273 | X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam | 2e-06 | ||
| 2pl0_A | 289 | Lck Bound To Imatinib Length = 289 | 2e-06 | ||
| 3lck_A | 271 | The Kinase Domain Of Human Lymphocyte Kinase (Lck), | 2e-06 | ||
| 3bym_A | 272 | X-Ray Co-Crystal Structure Aminobenzimidazole Triaz | 2e-06 | ||
| 2of2_A | 271 | Crystal Structure Of Furanopyrimidine 8 Bound To Lc | 2e-06 | ||
| 3c4c_A | 280 | B-Raf Kinase In Complex With Plx4720 Length = 280 | 2e-06 | ||
| 3bys_A | 277 | Co-Crystal Structure Of Lck And Aminopyrimidine Ami | 2e-06 | ||
| 2ofv_A | 277 | Crystal Structure Of Aminoquinazoline 1 Bound To Lc | 2e-06 | ||
| 2og8_A | 265 | Crystal Structure Of Aminoquinazoline 36 Bound To L | 2e-06 | ||
| 1uwj_A | 276 | The Complex Of Mutant V599e B-raf And Bay439006 Len | 3e-06 | ||
| 4g9r_A | 307 | B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr | 3e-06 | ||
| 3idp_A | 300 | B-Raf V600e Kinase Domain In Complex With An Aminoi | 4e-06 | ||
| 2zv7_A | 279 | Lyn Tyrosine Kinase Domain, Apo Form Length = 279 | 5e-06 | ||
| 4fk3_A | 292 | B-Raf Kinase V600e Oncogenic Mutant In Complex With | 6e-06 | ||
| 3og7_A | 289 | B-Raf Kinase V600e Oncogenic Mutant In Complex With | 7e-06 | ||
| 2rei_A | 318 | Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep | 7e-06 | ||
| 3mpm_A | 267 | Lck Complexed With A Pyrazolopyrimidine Length = 26 | 8e-06 | ||
| 2jed_A | 352 | The Crystal Structure Of The Kinase Domain Of The P | 1e-05 | ||
| 2qon_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 2e-05 | ||
| 3pwy_A | 311 | Crystal Structure Of An Extender (Spd28345)-Modifie | 2e-05 | ||
| 3a4o_X | 286 | Lyn Kinase Domain Length = 286 | 2e-05 | ||
| 1k9a_A | 450 | Crystal Structure Analysis Of Full-Length Carboxyl- | 2e-05 | ||
| 1mqb_A | 333 | Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro | 2e-05 | ||
| 2qok_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 2e-05 | ||
| 1xjd_A | 345 | Crystal Structure Of Pkc-Theta Complexed With Staur | 2e-05 | ||
| 1qcf_A | 454 | Crystal Structure Of Hck In Complex With A Src Fami | 2e-05 | ||
| 1byg_A | 278 | Kinase Domain Of Human C-Terminal Src Kinase (Csk) | 2e-05 | ||
| 3d7u_A | 263 | Structural Basis For The Recognition Of C-Src By It | 2e-05 | ||
| 2hk5_A | 270 | Hck Kinase In Complex With Lck Targetted Inhibitor | 2e-05 | ||
| 3pls_A | 298 | Ron In Complex With Ligand Amp-Pnp Length = 298 | 3e-05 | ||
| 3ggf_A | 301 | Crystal Structure Of Human SerineTHREONINE-Protein | 3e-05 | ||
| 2c6e_A | 283 | Aurora A Kinase Activated Mutant (T287d) In Complex | 4e-05 | ||
| 2c6d_A | 275 | Aurora A Kinase Activated Mutant (T287d) In Complex | 4e-05 | ||
| 4a07_A | 311 | Human Pdk1 Kinase Domain In Complex With Allosteric | 4e-05 | ||
| 2r7b_A | 312 | Crystal Structure Of The Phosphoinositide-Dependent | 4e-05 | ||
| 1jpa_A | 312 | Crystal Structure Of Unphosphorylated Ephb2 Recepto | 4e-05 | ||
| 3nax_A | 311 | Pdk1 In Complex With Inhibitor Mp7 Length = 311 | 4e-05 | ||
| 3lau_A | 287 | Crystal Structure Of Aurora2 Kinase In Complex With | 4e-05 | ||
| 3fdn_A | 279 | Structure-Based Drug Design Of Novel Aurora Kinase | 4e-05 | ||
| 2r2p_A | 295 | Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep | 4e-05 | ||
| 3qc4_A | 314 | Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = | 4e-05 | ||
| 2xck_A | 309 | Crystal Structure Of Pdk1 In Complex With A Pyrazol | 4e-05 | ||
| 3h9o_A | 311 | Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) | 4e-05 | ||
| 3orx_A | 316 | Pdk1 Mutant Bound To Allosteric Disulfide Fragment | 5e-05 | ||
| 3iop_A | 312 | Pdk-1 In Complex With The Inhibitor Compound-8i Len | 5e-05 | ||
| 3dzq_A | 361 | Human Epha3 Kinase Domain In Complex With Inhibitor | 5e-05 | ||
| 3rwp_A | 311 | Discovery Of A Novel, Potent And Selective Inhibito | 5e-05 | ||
| 3hrc_A | 311 | Crystal Structure Of A Mutant Of Human Pdk1 Kinase | 5e-05 | ||
| 3sc1_A | 311 | Novel Isoquinolone Pdk1 Inhibitors Discovered Throu | 5e-05 | ||
| 2xch_A | 309 | Crystal Structure Of Pdk1 In Complex With A Pyrazol | 5e-05 | ||
| 1uu3_A | 310 | Structure Of Human Pdk1 Kinase Domain In Complex Wi | 5e-05 | ||
| 1h1w_A | 289 | High Resolution Crystal Structure Of The Human Pdk1 | 5e-05 | ||
| 2qoc_A | 344 | Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp | 5e-05 | ||
| 3nay_A | 311 | Pdk1 In Complex With Inhibitor Mp6 Length = 311 | 5e-05 | ||
| 2qob_A | 344 | Human Epha3 Kinase Domain, Base Structure Length = | 5e-05 | ||
| 2biy_A | 310 | Structure Of Pdk1-S241a Mutant Kinase Domain Length | 5e-05 | ||
| 1z5m_A | 286 | Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr | 5e-05 | ||
| 2qoo_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 5e-05 | ||
| 3nus_A | 286 | Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra | 5e-05 | ||
| 2hel_A | 306 | Crystal Structure Of A Mutant Epha4 Kinase Domain ( | 5e-05 | ||
| 3nun_A | 292 | Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea | 5e-05 | ||
| 2qoi_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f: | 5e-05 | ||
| 1uu9_A | 286 | Structure Of Human Pdk1 Kinase Domain In Complex Wi | 5e-05 | ||
| 2qo7_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Dephos | 5e-05 | ||
| 2qof_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596f | 5e-05 | ||
| 2qod_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y602f | 5e-05 | ||
| 2gsf_A | 373 | The Human Epha3 Receptor Tyrosine Kinase And Juxtam | 6e-05 | ||
| 3fxx_A | 371 | Human Epha3 Kinase And Juxtamembrane Region Bound T | 6e-05 | ||
| 3zhp_C | 294 | Human Mst3 (stk24) In Complex With Mo25beta Length | 6e-05 | ||
| 2qol_A | 373 | Human Epha3 Kinase And Juxtamembrane Region, Y596:y | 6e-05 | ||
| 3ckw_A | 304 | Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3 | 6e-05 | ||
| 2w5a_A | 279 | Human Nek2 Kinase Adp-Bound Length = 279 | 8e-05 | ||
| 2xru_A | 280 | Aurora-A T288e Complexed With Pha-828300 Length = 2 | 1e-04 | ||
| 3k54_A | 283 | Structures Of Human Bruton's Tyrosine Kinase In Act | 1e-04 | ||
| 3kul_A | 325 | Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep | 1e-04 | ||
| 3qbn_A | 281 | Structure Of Human Aurora A In Complex With A Diami | 1e-04 | ||
| 3r21_A | 271 | Design, Synthesis, And Biological Evaluation Of Pyr | 1e-04 | ||
| 3gen_A | 283 | The 1.6 A Crystal Structure Of Human Bruton's Tyros | 1e-04 | ||
| 4gs6_A | 315 | Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz | 1e-04 | ||
| 4ebw_A | 304 | Structure Of Focal Adhesion Kinase Catalytic Domain | 1e-04 | ||
| 2eva_A | 307 | Structural Basis For The Interaction Of Tak1 Kinase | 2e-04 | ||
| 3pix_A | 274 | Crystal Structure Of Btk Kinase Domain Complexed Wi | 2e-04 | ||
| 3ocs_A | 271 | Crystal Structure Of Bruton's Tyrosine Kinase In Co | 2e-04 | ||
| 1mp8_A | 281 | Crystal Structure Of Focal Adhesion Kinase (Fak) Le | 2e-04 | ||
| 3kul_B | 325 | Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep | 2e-04 | ||
| 3pxk_A | 282 | Focal Adhesion Kinase Catalytic Domain In Complex W | 2e-04 | ||
| 2bmc_A | 306 | Aurora-2 T287d T288d Complexed With Pha-680632 Leng | 2e-04 | ||
| 3d7t_A | 269 | Structural Basis For The Recognition Of C-Src By It | 2e-04 | ||
| 3p08_A | 267 | Crystal Structure Of The Human Btk Kinase Domain Le | 2e-04 | ||
| 2z66_A | 306 | Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A | 2e-04 | ||
| 2y6m_A | 291 | Crystal Structure Of Epha4 Kinase Domain Length = 2 | 2e-04 | ||
| 2jkm_A | 276 | Focal Adhesion Kinase Catalytic Domain In Complex W | 2e-04 | ||
| 3qgw_A | 286 | Crystal Structure Of Itk Kinase Bound To An Inhibit | 2e-04 | ||
| 2j0m_B | 276 | Crystal Structure A Two-Chain Complex Between The F | 2e-04 | ||
| 4hct_A | 269 | Crystal Structure Of Itk In Complex With Compound 5 | 2e-04 | ||
| 2xyu_A | 285 | Crystal Structure Of Epha4 Kinase Domain In Complex | 2e-04 | ||
| 2dwb_A | 285 | Aurora-A Kinase Complexed With Amppnp Length = 285 | 2e-04 | ||
| 2f9g_A | 353 | Crystal Structure Of Fus3 Phosphorylated On Tyr182 | 2e-04 | ||
| 1mq4_A | 272 | Crystal Structure Of Aurora-A Protein Kinase Length | 2e-04 | ||
| 2j50_A | 280 | Structure Of Aurora-2 In Complex With Pha-739358 Le | 2e-04 | ||
| 2etm_A | 281 | Crystal Structure Of Focal Adhesion Kinase Domain C | 2e-04 | ||
| 3bz3_A | 276 | Crystal Structure Analysis Of Focal Adhesion Kinase | 2e-04 | ||
| 1k2p_A | 263 | Crystal Structure Of Bruton's Tyrosine Kinase Domai | 2e-04 | ||
| 3t9t_A | 267 | Crystal Structure Of Btk Mutant (F435t,K596r) Compl | 2e-04 | ||
| 2b9f_A | 353 | Crystal Structure Of Non-Phosphorylated Fus3 Length | 2e-04 | ||
| 2j4z_A | 306 | Structure Of Aurora-2 In Complex With Pha-680626 Le | 2e-04 | ||
| 3v5j_A | 266 | Crystal Structure Of Interleukin-2 Inducible T-Cell | 2e-04 | ||
| 2wqe_A | 262 | Structure Of S155r Aurora-A Somatic Mutant Length = | 2e-04 | ||
| 3o50_A | 267 | Crystal Structure Of Benzamide 9 Bound To Auroraa L | 2e-04 | ||
| 1sm2_A | 264 | Crystal Structure Of The Phosphorylated Interleukin | 2e-04 | ||
| 3e5a_A | 268 | Crystal Structure Of Aurora A In Complex With Vx-68 | 2e-04 | ||
| 3oct_A | 265 | Crystal Structure Of Bruton's Tyrosine Kinase Mutan | 2e-04 | ||
| 2w1d_A | 275 | Structure Determination Of Aurora Kinase In Complex | 3e-04 | ||
| 2x6d_A | 285 | Aurora-A Bound To An Inhibitor Length = 285 | 3e-04 | ||
| 2xng_A | 283 | Structure Of Aurora-A Bound To A Selective Imidazop | 3e-04 | ||
| 3sxr_A | 268 | Crystal Structure Of Bmx Non-Receptor Tyrosine Kina | 3e-04 | ||
| 2b9h_A | 353 | Crystal Structure Of Fus3 With A Docking Motif From | 3e-04 | ||
| 2hen_A | 286 | Crystal Structure Of The Ephb2 Receptor Kinase Doma | 3e-04 | ||
| 4e5a_X | 360 | The W197a Mutant Of P38a Map Kinase Length = 360 | 3e-04 | ||
| 3ckx_A | 304 | Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3 | 3e-04 | ||
| 2j0j_A | 656 | Crystal Structure Of A Fragment Of Focal Adhesion K | 3e-04 | ||
| 2jkk_A | 276 | Focal Adhesion Kinase Catalytic Domain In Complex W | 3e-04 | ||
| 3lxk_A | 327 | Structural And Thermodynamic Characterization Of Th | 3e-04 | ||
| 2wtw_A | 285 | Aurora-A Inhibitor Structure (2nd Crystal Form) Len | 3e-04 | ||
| 1muo_A | 297 | Crystal Structure Of Aurora-2, An Oncogenic Serine- | 3e-04 | ||
| 3dtc_A | 271 | Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp | 3e-04 | ||
| 3a7f_A | 303 | Human Mst3 Kinase Length = 303 | 3e-04 | ||
| 3pjc_A | 315 | Crystal Structure Of Jak3 Complexed With A Potent A | 3e-04 | ||
| 2jav_A | 279 | Human Kinase With Pyrrole-Indolinone Ligand Length | 3e-04 | ||
| 3miy_A | 266 | X-Ray Crystal Structure Of Itk Complexed With Sunit | 3e-04 | ||
| 2j0l_A | 276 | Crystal Structure Of A The Active Conformation Of T | 4e-04 | ||
| 2xik_A | 294 | Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K | 4e-04 | ||
| 2yza_A | 276 | Crystal Structure Of Kinase Domain Of Human 5'-Amp- | 4e-04 | ||
| 3db6_A | 301 | Crystal Structure Of An Activated (Thr->asp) Polo-L | 4e-04 | ||
| 3tt0_A | 382 | Co-Structure Of Fibroblast Growth Factor Receptor 1 | 4e-04 | ||
| 3dk6_A | 293 | Crystal Structure Of Mutant Abl Kinase Domain In Co | 4e-04 | ||
| 3d5v_A | 317 | Crystal Structure Of An Activated (Thr->asp) Polo-L | 5e-04 | ||
| 2gqg_A | 278 | X-Ray Crystal Structure Of Dasatinib (Bms-354825) B | 5e-04 | ||
| 3dk7_A | 277 | Crystal Structure Of Mutant Abl Kinase Domain In Co | 5e-04 | ||
| 2j0k_A | 656 | Crystal Structure Of A Fragment Of Focal Adhesion K | 5e-04 | ||
| 1fot_A | 318 | Structure Of The Unliganded Camp-Dependent Protein | 5e-04 | ||
| 2v7a_A | 286 | Crystal Structure Of The T315i Abl Mutant In Comple | 5e-04 | ||
| 3s95_A | 310 | Crystal Structure Of The Human Limk1 Kinase Domain | 5e-04 | ||
| 3d14_A | 272 | Crystal Structure Of Mouse Aurora A (Asn186->gly, L | 6e-04 | ||
| 3qri_A | 277 | The Crystal Structure Of Human Abl1 Kinase Domain I | 6e-04 | ||
| 2qoh_A | 288 | Crystal Structure Of Abl Kinase Bound With Ppy-a Le | 6e-04 | ||
| 2e2b_A | 293 | Crystal Structure Of The C-Abl Kinase Domain In Com | 6e-04 | ||
| 2g1t_A | 287 | A Src-Like Inactive Conformation In The Abl Tyrosin | 6e-04 | ||
| 3qrj_A | 277 | The Crystal Structure Of Human Abl1 Kinase Domain T | 6e-04 | ||
| 3oxz_A | 284 | Crystal Structure Of Abl Kinase Domain Bound With A | 6e-04 | ||
| 4a4x_A | 279 | Nek2-Ede Bound To Cct248662 Length = 279 | 6e-04 | ||
| 2hz0_A | 270 | Abl Kinase Domain In Complex With Nvp-Aeg082 Length | 6e-04 | ||
| 2hzi_A | 277 | Abl Kinase Domain In Complex With Pd180970 Length = | 6e-04 | ||
| 2z60_A | 288 | Crystal Structure Of The T315i Mutant Of Abl Kinase | 6e-04 | ||
| 4an2_A | 301 | Crystal Structures Of Human Mek1 With Carboxamide-B | 6e-04 | ||
| 3pyy_A | 298 | Discovery And Characterization Of A Cell-Permeable, | 6e-04 | ||
| 1fpu_A | 293 | Crystal Structure Of Abl Kinase Domain In Complex W | 6e-04 | ||
| 2hyy_A | 273 | Human Abl Kinase Domain In Complex With Imatinib (S | 6e-04 | ||
| 3oy3_A | 284 | Crystal Structure Of Abl T315i Mutant Kinase Domain | 6e-04 | ||
| 2hiw_A | 287 | Crystal Structure Of Inactive Conformation Abl Kina | 6e-04 | ||
| 4aoj_A | 329 | Human Trka In Complex With The Inhibitor Az-23 Leng | 6e-04 | ||
| 3js2_A | 317 | Crystal Structure Of Minimal Kinase Domain Of Fibro | 6e-04 | ||
| 3kxx_A | 317 | Structure Of The Mutant Fibroblast Growth Factor Re | 7e-04 | ||
| 3gql_A | 326 | Crystal Structure Of Activated Receptor Tyrosine Ki | 7e-04 | ||
| 4f63_A | 309 | Crystal Structure Of Human Fibroblast Growth Factor | 7e-04 | ||
| 2f4j_A | 287 | Structure Of The Kinase Domain Of An Imatinib-Resis | 7e-04 | ||
| 4hvd_A | 314 | Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h | 7e-04 | ||
| 3rhx_B | 306 | Crystal Structure Of The Catalytic Domain Of Fgfr1 | 7e-04 | ||
| 2vwu_A | 302 | Ephb4 Kinase Domain Inhibitor Complex Length = 302 | 7e-04 | ||
| 3c4f_A | 302 | Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M | 7e-04 | ||
| 2g2f_A | 287 | A Src-Like Inactive Conformation In The Abl Tyrosin | 7e-04 | ||
| 1fgk_A | 310 | Crystal Structure Of The Tyrosine Kinase Domain Of | 7e-04 | ||
| 3ubd_A | 304 | Structure Of N-Terminal Domain Of Rsk2 Kinase In Co | 7e-04 | ||
| 3lxn_A | 318 | Structural And Thermodynamic Characterization Of Th | 7e-04 | ||
| 2fst_X | 367 | Mitogen Activated Protein Kinase P38alpha (d176a+f3 | 7e-04 | ||
| 2fso_X | 367 | Mitogen Activated Protein Kinase P38alpha (D176a) A | 8e-04 | ||
| 4el9_A | 305 | Structure Of N-Terminal Kinase Domain Of Rsk2 With | 8e-04 | ||
| 2fsl_X | 367 | Mitogen Activated Protein Kinase P38alpha (D176a+f3 | 8e-04 | ||
| 3hyh_A | 275 | Crystal Structure Of The Protein Kinase Domain Of Y | 8e-04 | ||
| 2r4b_A | 321 | Erbb4 Kinase Domain Complexed With A Thienopyrimidi | 8e-04 | ||
| 3dae_A | 283 | Crystal Structure Of Phosphorylated Snf1 Kinase Dom | 8e-04 | ||
| 3dk3_A | 293 | Crystal Structure Of Mutant Abl Kinase Domain In Co | 8e-04 | ||
| 1yvj_A | 290 | Crystal Structure Of The Jak3 Kinase Domain In Comp | 8e-04 | ||
| 3nnx_A | 354 | Crystal Structure Of Phosphorylated P38 Alpha In Co | 8e-04 | ||
| 2fh9_A | 274 | Structure And Dimerization Of The Kinase Domain Fro | 8e-04 | ||
| 1s9j_A | 341 | X-Ray Structure Of The Human Mitogen-Activated Prot | 9e-04 | ||
| 3gqi_A | 326 | Crystal Structure Of Activated Receptor Tyrosine Ki | 9e-04 | ||
| 2p55_A | 333 | X-Ray Structure Of The Human Mitogen-Activated Prot | 9e-04 | ||
| 2h6d_A | 276 | Protein Kinase Domain Of The Human 5'-Amp-Activated | 9e-04 | ||
| 3nrm_A | 283 | Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito | 9e-04 | ||
| 4agc_A | 353 | Crystal Structure Of Vegfr2 (Juxtamembrane And Kina | 9e-04 | ||
| 2y4i_C | 395 | Ksr2-Mek1 Heterodimer Length = 395 | 9e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349 | Back alignment and structure |
|
| >pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326 | Back alignment and structure |
|
| >pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309 | Back alignment and structure |
|
| >pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327 | Back alignment and structure |
|
| >pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321 | Back alignment and structure |
|
| >pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309 | Back alignment and structure |
|
| >pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307 | Back alignment and structure |
|
| >pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319 | Back alignment and structure |
|
| >pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318 | Back alignment and structure |
|
| >pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307 | Back alignment and structure |
|
| >pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308 | Back alignment and structure |
|
| >pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309 | Back alignment and structure |
|
| >pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310 | Back alignment and structure |
|
| >pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292 | Back alignment and structure |
|
| >pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306 | Back alignment and structure |
|
| >pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302 | Back alignment and structure |
|
| >pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298 | Back alignment and structure |
|
| >pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319 | Back alignment and structure |
|
| >pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317 | Back alignment and structure |
|
| >pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373 | Back alignment and structure |
|
| >pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312 | Back alignment and structure |
|
| >pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314 | Back alignment and structure |
|
| >pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314 | Back alignment and structure |
|
| >pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286 | Back alignment and structure |
|
| >pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301 | Back alignment and structure |
|
| >pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317 | Back alignment and structure |
|
| >pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276 | Back alignment and structure |
|
| >pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283 | Back alignment and structure |
|
| >pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286 | Back alignment and structure |
|
| >pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286 | Back alignment and structure |
|
| >pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283 | Back alignment and structure |
|
| >pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452 | Back alignment and structure |
|
| >pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452 | Back alignment and structure |
|
| >pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452 | Back alignment and structure |
|
| >pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286 | Back alignment and structure |
|
| >pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286 | Back alignment and structure |
|
| >pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275 | Back alignment and structure |
|
| >pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535 | Back alignment and structure |
|
| >pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298 | Back alignment and structure |
|
| >pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279 | Back alignment and structure |
|
| >pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277 | Back alignment and structure |
|
| >pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286 | Back alignment and structure |
|
| >pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294 | Back alignment and structure |
|
| >pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453 | Back alignment and structure |
|
| >pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311 | Back alignment and structure |
|
| >pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311 | Back alignment and structure |
|
| >pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299 | Back alignment and structure |
|
| >pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311 | Back alignment and structure |
|
| >pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311 | Back alignment and structure |
|
| >pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283 | Back alignment and structure |
|
| >pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311 | Back alignment and structure |
|
| >pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279 | Back alignment and structure |
|
| >pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281 | Back alignment and structure |
|
| >pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275 | Back alignment and structure |
|
| >pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282 | Back alignment and structure |
|
| >pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276 | Back alignment and structure |
|
| >pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284 | Back alignment and structure |
|
| >pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307 | Back alignment and structure |
|
| >pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306 | Back alignment and structure |
|
| >pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288 | Back alignment and structure |
|
| >pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287 | Back alignment and structure |
|
| >pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285 | Back alignment and structure |
|
| >pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279 | Back alignment and structure |
|
| >pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273 | Back alignment and structure |
|
| >pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289 | Back alignment and structure |
|
| >pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271 | Back alignment and structure |
|
| >pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272 | Back alignment and structure |
|
| >pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271 | Back alignment and structure |
|
| >pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280 | Back alignment and structure |
|
| >pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277 | Back alignment and structure |
|
| >pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277 | Back alignment and structure |
|
| >pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265 | Back alignment and structure |
|
| >pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276 | Back alignment and structure |
|
| >pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307 | Back alignment and structure |
|
| >pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300 | Back alignment and structure |
|
| >pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279 | Back alignment and structure |
|
| >pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292 | Back alignment and structure |
|
| >pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289 | Back alignment and structure |
|
| >pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318 | Back alignment and structure |
|
| >pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267 | Back alignment and structure |
|
| >pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352 | Back alignment and structure |
|
| >pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311 | Back alignment and structure |
|
| >pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286 | Back alignment and structure |
|
| >pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450 | Back alignment and structure |
|
| >pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333 | Back alignment and structure |
|
| >pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345 | Back alignment and structure |
|
| >pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454 | Back alignment and structure |
|
| >pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278 | Back alignment and structure |
|
| >pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263 | Back alignment and structure |
|
| >pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270 | Back alignment and structure |
|
| >pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298 | Back alignment and structure |
|
| >pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301 | Back alignment and structure |
|
| >pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283 | Back alignment and structure |
|
| >pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275 | Back alignment and structure |
|
| >pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311 | Back alignment and structure |
|
| >pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312 | Back alignment and structure |
|
| >pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312 | Back alignment and structure |
|
| >pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311 | Back alignment and structure |
|
| >pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287 | Back alignment and structure |
|
| >pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279 | Back alignment and structure |
|
| >pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295 | Back alignment and structure |
|
| >pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314 | Back alignment and structure |
|
| >pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309 | Back alignment and structure |
|
| >pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311 | Back alignment and structure |
|
| >pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316 | Back alignment and structure |
|
| >pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312 | Back alignment and structure |
|
| >pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361 | Back alignment and structure |
|
| >pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311 | Back alignment and structure |
|
| >pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311 | Back alignment and structure |
|
| >pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311 | Back alignment and structure |
|
| >pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309 | Back alignment and structure |
|
| >pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310 | Back alignment and structure |
|
| >pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289 | Back alignment and structure |
|
| >pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344 | Back alignment and structure |
|
| >pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311 | Back alignment and structure |
|
| >pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344 | Back alignment and structure |
|
| >pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310 | Back alignment and structure |
|
| >pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286 | Back alignment and structure |
|
| >pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286 | Back alignment and structure |
|
| >pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306 | Back alignment and structure |
|
| >pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292 | Back alignment and structure |
|
| >pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373 | Back alignment and structure |
|
| >pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286 | Back alignment and structure |
|
| >pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373 | Back alignment and structure |
|
| >pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373 | Back alignment and structure |
|
| >pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373 | Back alignment and structure |
|
| >pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373 | Back alignment and structure |
|
| >pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371 | Back alignment and structure |
|
| >pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294 | Back alignment and structure |
|
| >pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373 | Back alignment and structure |
|
| >pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304 | Back alignment and structure |
|
| >pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279 | Back alignment and structure |
|
| >pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280 | Back alignment and structure |
|
| >pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283 | Back alignment and structure |
|
| >pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325 | Back alignment and structure |
|
| >pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281 | Back alignment and structure |
|
| >pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271 | Back alignment and structure |
|
| >pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283 | Back alignment and structure |
|
| >pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315 | Back alignment and structure |
|
| >pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304 | Back alignment and structure |
|
| >pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307 | Back alignment and structure |
|
| >pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274 | Back alignment and structure |
|
| >pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271 | Back alignment and structure |
|
| >pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281 | Back alignment and structure |
|
| >pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325 | Back alignment and structure |
|
| >pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282 | Back alignment and structure |
|
| >pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306 | Back alignment and structure |
|
| >pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269 | Back alignment and structure |
|
| >pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267 | Back alignment and structure |
|
| >pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306 | Back alignment and structure |
|
| >pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291 | Back alignment and structure |
|
| >pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276 | Back alignment and structure |
|
| >pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286 | Back alignment and structure |
|
| >pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276 | Back alignment and structure |
|
| >pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269 | Back alignment and structure |
|
| >pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285 | Back alignment and structure |
|
| >pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285 | Back alignment and structure |
|
| >pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353 | Back alignment and structure |
|
| >pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272 | Back alignment and structure |
|
| >pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280 | Back alignment and structure |
|
| >pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281 | Back alignment and structure |
|
| >pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276 | Back alignment and structure |
|
| >pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263 | Back alignment and structure |
|
| >pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267 | Back alignment and structure |
|
| >pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353 | Back alignment and structure |
|
| >pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306 | Back alignment and structure |
|
| >pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266 | Back alignment and structure |
|
| >pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262 | Back alignment and structure |
|
| >pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267 | Back alignment and structure |
|
| >pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264 | Back alignment and structure |
|
| >pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268 | Back alignment and structure |
|
| >pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265 | Back alignment and structure |
|
| >pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275 | Back alignment and structure |
|
| >pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285 | Back alignment and structure |
|
| >pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283 | Back alignment and structure |
|
| >pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268 | Back alignment and structure |
|
| >pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353 | Back alignment and structure |
|
| >pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286 | Back alignment and structure |
|
| >pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360 | Back alignment and structure |
|
| >pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304 | Back alignment and structure |
|
| >pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656 | Back alignment and structure |
|
| >pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276 | Back alignment and structure |
|
| >pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327 | Back alignment and structure |
|
| >pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285 | Back alignment and structure |
|
| >pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297 | Back alignment and structure |
|
| >pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271 | Back alignment and structure |
|
| >pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303 | Back alignment and structure |
|
| >pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315 | Back alignment and structure |
|
| >pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279 | Back alignment and structure |
|
| >pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266 | Back alignment and structure |
|
| >pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276 | Back alignment and structure |
|
| >pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294 | Back alignment and structure |
|
| >pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276 | Back alignment and structure |
|
| >pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301 | Back alignment and structure |
|
| >pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382 | Back alignment and structure |
|
| >pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293 | Back alignment and structure |
|
| >pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317 | Back alignment and structure |
|
| >pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278 | Back alignment and structure |
|
| >pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277 | Back alignment and structure |
|
| >pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656 | Back alignment and structure |
|
| >pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318 | Back alignment and structure |
|
| >pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286 | Back alignment and structure |
|
| >pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310 | Back alignment and structure |
|
| >pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272 | Back alignment and structure |
|
| >pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277 | Back alignment and structure |
|
| >pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288 | Back alignment and structure |
|
| >pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293 | Back alignment and structure |
|
| >pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287 | Back alignment and structure |
|
| >pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277 | Back alignment and structure |
|
| >pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284 | Back alignment and structure |
|
| >pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279 | Back alignment and structure |
|
| >pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270 | Back alignment and structure |
|
| >pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277 | Back alignment and structure |
|
| >pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288 | Back alignment and structure |
|
| >pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301 | Back alignment and structure |
|
| >pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298 | Back alignment and structure |
|
| >pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293 | Back alignment and structure |
|
| >pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273 | Back alignment and structure |
|
| >pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284 | Back alignment and structure |
|
| >pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287 | Back alignment and structure |
|
| >pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329 | Back alignment and structure |
|
| >pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317 | Back alignment and structure |
|
| >pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317 | Back alignment and structure |
|
| >pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326 | Back alignment and structure |
|
| >pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309 | Back alignment and structure |
|
| >pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287 | Back alignment and structure |
|
| >pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314 | Back alignment and structure |
|
| >pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306 | Back alignment and structure |
|
| >pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302 | Back alignment and structure |
|
| >pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302 | Back alignment and structure |
|
| >pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287 | Back alignment and structure |
|
| >pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310 | Back alignment and structure |
|
| >pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304 | Back alignment and structure |
|
| >pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318 | Back alignment and structure |
|
| >pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367 | Back alignment and structure |
|
| >pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367 | Back alignment and structure |
|
| >pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305 | Back alignment and structure |
|
| >pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367 | Back alignment and structure |
|
| >pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275 | Back alignment and structure |
|
| >pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321 | Back alignment and structure |
|
| >pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283 | Back alignment and structure |
|
| >pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293 | Back alignment and structure |
|
| >pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290 | Back alignment and structure |
|
| >pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354 | Back alignment and structure |
|
| >pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274 | Back alignment and structure |
|
| >pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341 | Back alignment and structure |
|
| >pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326 | Back alignment and structure |
|
| >pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333 | Back alignment and structure |
|
| >pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276 | Back alignment and structure |
|
| >pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283 | Back alignment and structure |
|
| >pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353 | Back alignment and structure |
|
| >pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 377 bits (970), Expect = e-120
Identities = 138/524 (26%), Positives = 227/524 (43%), Gaps = 47/524 (8%)
Query: 91 LAIANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVS 150
+++ +L+ L + + G V + L L++S N P +
Sbjct: 171 WVLSDGCGELKHL-------AISGNKISGDVD--VSRCVNLEFLDVSSNNFST-GIPFLG 220
Query: 151 NLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSG 210
+ L+ L + N+LSG + T L+ L++ SN F G +P +K L+ L +
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAE 278
Query: 211 NGFNGTVPIRL-GELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPE 269
N F G +P L G L LDLS N G++ + L L +S+N SG +P +
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMD 337
Query: 270 -ISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLG 328
+ ++ L L N+F+G + L N A L S N SGP+ L
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLS------ASLLTLDLS--SNNFSGPILPNLC 389
Query: 329 K--WNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINL 386
+ N ++ ++L NN F G+IP + NCS L + LS N LSG+IP L L ++ L
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 387 DGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSI 446
NML G I + LE L L N LTG IP + N ++ + L++N G I
Sbjct: 450 WLNMLEGEIPQELM---YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 447 PMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPI--------LSKH 498
P +G +L IL+L NN+ +G+IP ++ D L +LDL+ N + I
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566
Query: 499 SSYFHEVNIPDLSYSHNYRKFDLSYNM--LSGPIPKELGSCVVV---------LTGYIPR 547
+++ + ++ + N+ G ++L G+
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626
Query: 548 SLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
+ + + L++S N LS +P G++ L L+L +N+ G
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 373 bits (960), Expect = e-119
Identities = 156/489 (31%), Positives = 223/489 (45%), Gaps = 41/489 (8%)
Query: 116 SLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQL-G 174
L G S + ++L++LN+S N G P LK L+ LSL EN+ +G +P L G
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSG 291
Query: 175 VLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPI-RLGELTRLQDLDLS 233
L L L N F G +P G L+SL S N F+G +P+ L ++ L+ LDLS
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 234 DNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI--SHLKKLSDHYLGINQFTGSIQ 291
N SG L SL SL LD+S+N SG I P + + L + YL N FTG I
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 292 SELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV 351
L NC L S N LSG +PS LG +++ + L N G IP E+
Sbjct: 412 PTLSNCSE-------LVSLHLS--FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 352 GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKL 411
L+ + L N L+G IP L++ +L I+L N L+G I G L L L
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG---RLENLAIL 519
Query: 412 DLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIP 471
LS+N +G IP E+G+ RS+ L LN+N FNG+IP + + + N + G
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRY 575
Query: 472 EKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIP 531
I + + + N L F + L+ +++ + G
Sbjct: 576 VYIKNDGMKKECHGAGNLLE----------FQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625
Query: 532 KELGSCVVV---------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNL 582
+ + L+GYIP+ +G + LNL N +S +P G+L GL L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 583 DLSYNEFDG 591
DLS N+ DG
Sbjct: 686 DLSSNKLDG 694
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 367 bits (944), Expect = e-116
Identities = 150/491 (30%), Positives = 225/491 (45%), Gaps = 45/491 (9%)
Query: 116 SLKGPVSPLLFDLSKLRVLNLSQNLLFGQ-PSPQVSNLKRLKMLSLGENQLSGSLPSQLG 174
GP+ P L L+ L+L++N G+ P L L L N G++P G
Sbjct: 258 QFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 175 VLTWLETLSLCSNSFTGEMPSE-LGDMKQLKSLDFSGNGFNGTVPIRLGELT-RLQDLDL 232
+ LE+L+L SN+F+GE+P + L M+ LK LD S N F+G +P L L+ L LDL
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 233 SDNLLSGSLTVSLF-TNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQ 291
S N SG + +L +L L + NN +G IPP +S+ +L +L N +G+I
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 292 SELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV 351
S LG+ L+ +N L G +P L +E++ L+ N G IP +
Sbjct: 436 SSLGSLSK-------LRDLKLW--LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 352 GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKL 411
NC+ L +I LSNN+L+G IP+ + E+L + L N SG I G C +L L
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL--- 543
Query: 412 DLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNN--NLNGS 469
DL++N+ G IP + K+ +NF G + + + N G
Sbjct: 544 DLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 470 IPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGP 529
E++ L+ +++ P + + D+SYNMLSG
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTS------------PTFDNNGSMMFLDMSYNMLSGY 647
Query: 530 IPKELGSCVVV---------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLT 580
IPKE+GS + ++G IP +G L L+LS NKL +P + L LT
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 581 NLDLSYNEFDG 591
+DLS N G
Sbjct: 708 EIDLSNNNLSG 718
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 356 bits (915), Expect = e-112
Identities = 150/507 (29%), Positives = 230/507 (45%), Gaps = 50/507 (9%)
Query: 104 LLRVVYQVLRTQSLKGPVSPL--LFDLSKLRVLNLSQNLLFGQ-PSPQVSNLKRLKMLSL 160
+ L SL GPV+ L L S L+ LN+S N L L L++L L
Sbjct: 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158
Query: 161 GENQLSGSLPSQL---GVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTV 217
N +SG+ L+ L++ N +G++ + L+ LD S N F+ +
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 216
Query: 218 PIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLS 277
P LG+ + LQ LD+S N LSG + ++ L L++S+N G IPP LK L
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPP--LPLKSLQ 272
Query: 278 DHYLGINQFTGSIQSEL-GNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESV 336
L N+FTG I L G C L S N G +P + G + +ES+
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDT-------LTGLDLSG--NHFYGAVPPFFGSCSLLESL 323
Query: 337 WLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPREL-NDSESLVEINLDGNMLSGT 394
L++N F G +P++ LK + LS N+ SG +P L N S SL+ ++L N SG
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383
Query: 395 IEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDST 454
I + + L++L L +N TG+IP + N + L L+ N+ +G+IP LG +
Sbjct: 384 ILPNLCQNP-KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 455 SLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSH 514
L L+L N L G IP+++ + L+ L L +N+L+ I LS
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP------------SGLSNCT 490
Query: 515 NYRKFDLSYNMLSGPIPKELGSC----VVVL-----TGYIPRSLGHLSCSVKLNLSGNKL 565
N LS N L+G IPK +G ++ L +G IP LG + L+L+ N
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 566 SVLVPTSFGNLNGLTNLDLSYNEFDGN 592
+ +P + + ++ N G
Sbjct: 551 NGTIPAAMFKQ----SGKIAANFIAGK 573
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 353 bits (907), Expect = e-111
Identities = 144/498 (28%), Positives = 209/498 (41%), Gaps = 51/498 (10%)
Query: 115 QSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPS--Q 172
VS L L+ L L LS + + G L L L N LSG + +
Sbjct: 63 NVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTS 121
Query: 173 LGVLTWLETLSLCSNSFTGEMP-SELGDMKQLKSLDFSGNGFNGTVPI---RLGELTRLQ 228
LG + L+ L++ SN+ S + L+ LD S N +G + L+
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181
Query: 229 DLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTG 288
L +S N +SG + VS +L +LDVS+N S I P + L + N+ +G
Sbjct: 182 HLAISGNKISGDVDVS---RCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSG 237
Query: 289 SIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIP 348
+ C L++ S NQ GP+P ++ + L N+F G IP
Sbjct: 238 DFSRAISTCTE-------LKLLNIS--SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP 286
Query: 349 LEV-GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTI-EDVFGRCTNLS 406
+ G C L + LS N G++P L + L N SG + D +
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL---KMR 343
Query: 407 QLEKLDLSSNMLTGRIPKEIGNLR-SIQILKLNSNFFNGSIPMRLGDS--TSLNILELGN 463
L+ LDLS N +G +P+ + NL S+ L L+SN F+G I L + +L L L N
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 464 NNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSY 523
N G IP +++ ++L L LS+N LS I L R L
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP------------SSLGSLSKLRDLKLWL 451
Query: 524 NMLSGPIPKELGSCVVV---------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFG 574
NML G IP+EL + LTG IP L + + ++LS N+L+ +P G
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 575 NLNGLTNLDLSYNEFDGN 592
L L L LS N F GN
Sbjct: 512 RLENLAILKLSNNSFSGN 529
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 329 bits (846), Expect = e-102
Identities = 137/508 (26%), Positives = 213/508 (41%), Gaps = 59/508 (11%)
Query: 93 IANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQ-PSPQVSN 151
++ A L L L G V P S L L LS N G+ P +
Sbjct: 289 LSGACDTLTGL-------DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 152 LKRLKMLSLGENQLSGSLPSQLGVLTW-LETLSLCSNSFTGEMPSELGD--MKQLKSLDF 208
++ LK+L L N+ SG LP L L+ L TL L SN+F+G + L L+ L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 209 SGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPP 268
NGF G +P L + L L LS N LSG++ SL +L L L + N+L G IP
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQ 460
Query: 269 EISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLG 328
E+ ++K L L N TG I S L NC N L S N+L+G +P W+G
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTN-------LNWI--SLSNNRLTGEIPKWIG 511
Query: 329 KWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDG 388
+ + + L+NN F G IP E+G+C L ++ L+ N +G+IP + +
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAA 567
Query: 389 NMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPM 448
N ++G + + G +++ L + + S + G
Sbjct: 568 NFIAGKRYVYIKNDGMKKECH-GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626
Query: 449 RLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIP 508
++ S+ L++ N L+G IP++I + L L+L +N++S I + ++
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG------DLR 680
Query: 509 DLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVL 568
L+ DLS N L G IP+ + + L+ +++LS N LS
Sbjct: 681 GLNI------LDLSSNKLDGRIPQAMSA---------------LTMLTEIDLSNNNLSGP 719
Query: 569 VPTSFGNLNGLTNLDLSYNEFDGNNKFC 596
+P + F N C
Sbjct: 720 IPEM----GQFETFPPAK--FLNNPGLC 741
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 328 bits (843), Expect = e-101
Identities = 142/488 (29%), Positives = 220/488 (45%), Gaps = 52/488 (10%)
Query: 127 DLSKLRVLNLSQNLL---FGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183
K+ ++LS L F S + +L L+ L L + ++GS+ L +L
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106
Query: 184 LCSNSFTGEMPS--ELGDMKQLKSLDFSGNGFNGTVPIRLG-ELTRLQDLDLSDNLLSGS 240
L NS +G + + LG LK L+ S N + + G +L L+ LDLS N +SG+
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166
Query: 241 LTVSL--FTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCK 298
V L +L +S N +SG++ +S L + N F+ I LG+C
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCS 223
Query: 299 NFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLK 358
LQ S N+LSG + +++ + +++NQF+G IP L+
Sbjct: 224 A-------LQHLDISG--NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272
Query: 359 YIRLSNNKLSGSIPRELNDS-ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNM 417
Y+ L+ NK +G IP L+ + ++L ++L GN G + FG + S LE L LSSN
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG---SCSLLESLALSSNN 329
Query: 418 LTGRIPKE-IGNLRSIQILKLNSNFFNGSIPMRLGD-STSLNILELGNNNLNGSIPEKIA 475
+G +P + + +R +++L L+ N F+G +P L + S SL L+L +NN +G I +
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 476 D--LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKE 533
LQ L L N + I P LS LS+N LSG IP
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIP------------PTLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 534 LGSC---VVV------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDL 584
LGS + L G IP+ L ++ L L N L+ +P+ N L + L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 585 SYNEFDGN 592
S N G
Sbjct: 498 SNNRLTGE 505
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 257 bits (659), Expect = 2e-76
Identities = 79/527 (14%), Positives = 161/527 (30%), Gaps = 65/527 (12%)
Query: 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSP----QVSNLKRLKMLS 159
RV L G V + L++L VL L + +S +
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 160 LGENQLSGSLPSQLG--VLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTV 217
+ + L + S+ + + + N V
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFV 198
Query: 218 PIRLGELTRLQDLDLSDNLLSGSLTVSL------------------FTNLQSLSYLDVSN 259
+ LT+L+ + ++ + NL+ L+ ++V N
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258
Query: 260 NLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQL 319
+P + L ++ + N+ S + + + +I G N L
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGI-SGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317
Query: 320 -SGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDS 378
+ P+ + L K ++ + NQ G++P G+ L + L+ N+++ +
Sbjct: 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFT 376
Query: 379 ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTG-------RIPKEIGNLRS 431
E + ++ N L + ++S + +D S N + + +
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAK--SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434
Query: 432 IQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNG-------SIPEKIADLAQLQFLD 484
+ + L++N + + L+ + L N L E + L +D
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494
Query: 485 LSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGY 544
L +N L++ F +P L DLSYN S P + +
Sbjct: 495 LRFNKLTKLSDD-----FRATTLPYL------VGIDLSYNSFSK-FPTQPLNS------- 535
Query: 545 IPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
+L + + GN+ P LT L + N+
Sbjct: 536 --STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 241 bits (617), Expect = 2e-70
Identities = 65/513 (12%), Positives = 159/513 (30%), Gaps = 74/513 (14%)
Query: 102 ELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLG 161
E ++ + + + + K + N + V L +L+ +G
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS-KAVMRLTKLRQFYMG 214
Query: 162 ENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRL 221
+ + + + ++K L ++ +P L
Sbjct: 215 NSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269
Query: 222 GELTRLQDLDLSDNLLSGSLTVSL-------FTNLQSLSYLDVS-NNLLSGNIPPEISHL 273
L +Q ++++ N + + + + + NNL + + + +
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329
Query: 274 KKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQM 333
KKL NQ G + G+ L + NQ++ ++ G Q+
Sbjct: 330 KKLGMLECLYNQLEGKL-PAFGSEIK-------LASLNLA--YNQITEIPANFCGFTEQV 379
Query: 334 ESVWLNNNQFIGRIP--LEVGNCSMLKYIRLSNNKLSG-------SIPRELNDSESLVEI 384
E++ +N+ + IP + + S++ I S N++ + ++ I
Sbjct: 380 ENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438
Query: 385 NLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTG-------RIPKEIGNLRSIQILKL 437
NL N +S +++F S L ++L NMLT + N + + L
Sbjct: 439 NLSNNQISKFPKELFS---TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495
Query: 438 NSNFFNGSIP-MRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYN-NLSRPIL 495
N R L ++L N+ + P + + + L+ + +
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554
Query: 496 SKHSSYFHEVNIPD-LSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSC 554
+ P+ ++ + + + N + + +++ ++
Sbjct: 555 LRE--------WPEGITLCPSLTQLQIGSNDIRK-VNEKITP-----------NI----- 589
Query: 555 SVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
L++ N + + L Y+
Sbjct: 590 -SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 239 bits (613), Expect = 7e-70
Identities = 80/491 (16%), Positives = 149/491 (30%), Gaps = 60/491 (12%)
Query: 135 NLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTG--- 191
N ++ QP +++ R+ LSL SG +P +G LT LE L+L S+
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Query: 192 -EMPSELGDMKQLKSLDFSGNGFNGTVPIRLG--ELTRLQDLDLSDNLLSGSLTVSLFTN 248
P + + + T + + L ++ + S+
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK-KSSRI 181
Query: 249 LQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQ 308
+ + +N ++ + + L KL Y+G + F E +N +
Sbjct: 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE------- 233
Query: 309 IFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKL- 367
Q + V + N + ++P + ++ I ++ N+
Sbjct: 234 -------YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286
Query: 368 -------SGSIPRELNDSESLVEINLDGNML-SGTIEDVFGRCTNLSQLEKLDLSSNMLT 419
+ E + I + N L + +E + +L L+ N L
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ---KMKKLGMLECLYNQLE 343
Query: 420 GRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEK--IADL 477
G G+ + L L N G + + L +N L IP +
Sbjct: 344 G-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401
Query: 478 AQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSC 537
+ + +D SYN + P N +LS N +S + +
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPL-----DPTPFKGINVSSINLSNNQISKFPKELFSTG 456
Query: 538 V----------------VVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPT-SFGNLNGLT 580
+ + ++L NKL+ L L L
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516
Query: 581 NLDLSYNEFDG 591
+DLSYN F
Sbjct: 517 GIDLSYNSFSK 527
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 2e-63
Identities = 80/450 (17%), Positives = 154/450 (34%), Gaps = 69/450 (15%)
Query: 97 LKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQV------- 149
+K + L+ + ++ VS + L+KLR + + + +
Sbjct: 175 IKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE 233
Query: 150 ------------SNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFT------- 190
NLK L + + LP+ L L ++ +++ N
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293
Query: 191 -GEMPSELGDMKQLKSLDFSGNGF-NGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTN 248
+ ++ ++++ + N V L ++ +L L+ N L G L F +
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA--FGS 351
Query: 249 LQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFTG-SIQSELGNCKNFKSVLAE 306
L+ L+++ N ++ IP +++ + N+ + +
Sbjct: 352 EIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV------- 403
Query: 307 LQIFTFSAGMNQLSG-------PLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKY 359
+ FS N++ PL K + S+ L+NNQ S L
Sbjct: 404 MSAIDFS--YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461
Query: 360 IRLSNNKLSG-------SIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLD 412
I L N L+ ++ L I+L N L+ +D T L L +D
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA--TTLPYLVGID 519
Query: 413 LSSNMLTGRIPKEIGNLRSIQILKLN------SNFFNGSIPMRLGDSTSLNILELGNNNL 466
LS N + P + N +++ + N P + SL L++G+N++
Sbjct: 520 LSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578
Query: 467 NGSIPEKIADLAQLQFLDLSYNNLSRPILS 496
+ EKI + LD+ N LS
Sbjct: 579 R-KVNEKI--TPNISVLDIKDNPNISIDLS 605
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 8e-18
Identities = 24/192 (12%), Positives = 53/192 (27%), Gaps = 46/192 (23%)
Query: 402 CTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILEL 461
+ ++ L L +GR+P IG L +++L L S+ +
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER-------------- 122
Query: 462 GNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDL 521
P+ I+ + + + + P +S DL
Sbjct: 123 ------LFGPKGISANMSDEQKQKMRMHYQKTFVD---------YDPREDFS------DL 161
Query: 522 SYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTN 581
+ ++ I +S ++ N ++ + + L L
Sbjct: 162 IKDCINSDP----------QQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQ 210
Query: 582 LDLSYNEFDGNN 593
+ + F N
Sbjct: 211 FYMGNSPFVAEN 222
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 14/158 (8%), Positives = 33/158 (20%), Gaps = 50/158 (31%)
Query: 440 NFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHS 499
+ + + L + + L L +G +P+ I L +L+ L L +
Sbjct: 67 DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL--- 123
Query: 500 SYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLN 559
+ P+ + +
Sbjct: 124 --------------------------------------------FGPKGISANMSDEQKQ 139
Query: 560 LSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGNNKFCE 597
T DL + + + +
Sbjct: 140 KMRMHYQ---KTFVDYDPREDFSDLIKDCINSDPQQKS 174
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 234 bits (599), Expect = 2e-71
Identities = 75/308 (24%), Positives = 131/308 (42%), Gaps = 20/308 (6%)
Query: 168 SLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPI--RLGELT 225
L + + +WL T C+ ++ G + ++ +LD SG PI L L
Sbjct: 17 DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76
Query: 226 RLQDLDLSD-NLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGIN 284
L L + N L G + ++ L L YL +++ +SG IP +S +K L N
Sbjct: 77 YLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135
Query: 285 QFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKW-NQMESVWLNNNQF 343
+G++ + + N L TF N++SG +P G + S+ ++ N+
Sbjct: 136 ALSGTLPPSISSLPN-------LVGITFD--GNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 344 IGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCT 403
G+IP N + L ++ LS N L G ++ +I+L N L+ + V
Sbjct: 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG---- 241
Query: 404 NLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGN 463
L LDL +N + G +P+ + L+ + L ++ N G IP + G+ ++ N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYAN 300
Query: 464 NNLNGSIP 471
N P
Sbjct: 301 NKCLCGSP 308
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 232 bits (595), Expect = 8e-71
Identities = 85/329 (25%), Positives = 133/329 (40%), Gaps = 49/329 (14%)
Query: 194 PSELGDMKQLKS----LDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSL-FTN 248
+LG+ L S D + G + + R+ +LDLS L + N
Sbjct: 15 KKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN 74
Query: 249 LQSLSYLDVSN-NLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAEL 307
L L++L + N L G IPP I+ L +L Y+ +G+I L K L
Sbjct: 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-------L 127
Query: 308 QIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSML-KYIRLSNNK 366
FS N LSG LP + + + + N+ G IP G+ S L + +S N+
Sbjct: 128 VTLDFSY--NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 367 LSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI 426
L+G IP N+ L +DLS NML G
Sbjct: 186 LTGKIPPTF------------ANL----------------NLAFVDLSRNMLEGDASVLF 217
Query: 427 GNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLS 486
G+ ++ Q + L N + ++G S +LN L+L NN + G++P+ + L L L++S
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 487 YNNLSRPILSKHSSYFHEVNIPDLSYSHN 515
+NNL I +Y++N
Sbjct: 277 FNNLCGEIPQ--GGNLQ--RFDVSAYANN 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 6e-65
Identities = 75/311 (24%), Positives = 114/311 (36%), Gaps = 44/311 (14%)
Query: 134 LNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGS--LPSQLGVLTWLETLSLCS-NSFT 190
+ G + R+ L L L +PS L L +L L + N+
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 191 GEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQ 250
G +P + + QL L + +G +P L ++ L LD S N LSG+L S+ +L
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLP 149
Query: 251 SLSYLDVSNNLLSGNIPPEISHLKKLSDH-YLGINQFTGSIQSELGNCKNFKSVLAELQI 309
+L + N +SG IP KL + N+ TG I N L
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--------LAF 201
Query: 310 FTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG 369
S N L G G + + L N + +VG L + L NN++ G
Sbjct: 202 VDLS--RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG 258
Query: 370 SIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNL 429
++P+ L T L L L++S N L G IP+ GNL
Sbjct: 259 TLPQGL---------------------------TQLKFLHSLNVSFNNLCGEIPQG-GNL 290
Query: 430 RSIQILKLNSN 440
+ + +N
Sbjct: 291 QRFDVSAYANN 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 3e-56
Identities = 69/273 (25%), Positives = 116/273 (42%), Gaps = 17/273 (6%)
Query: 104 LLRVVYQVLRTQSLKG--PVSPLLFDLSKLRVLNLS-QNLLFGQPSPQVSNLKRLKMLSL 160
RV L +L P+ L +L L L + N L G P ++ L +L L +
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 161 GENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIR 220
+SG++P L + L TL N+ +G +P + + L + F GN +G +P
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 221 LGELTRL-QDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDH 279
G ++L + +S N L+G + + NL +L+++D+S N+L G+ K
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFA-NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 280 YLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLN 339
+L N + ++G KN L N++ G LP L + + S+ ++
Sbjct: 227 HLAKNSLAFDL-GKVGLSKN-------LNGLDLR--NNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 340 NNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIP 372
N G IP + GN +NNK P
Sbjct: 277 FNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 5e-50
Identities = 57/241 (23%), Positives = 86/241 (35%), Gaps = 26/241 (10%)
Query: 362 LSNNKLSGSIPRELNDSESLVEINLDGNMLSGT--IEDVFGRCTNLSQLEKLDLSS-NML 418
N G + + + ++L G L I NL L L + N L
Sbjct: 33 CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA---NLPYLNFLYIGGINNL 89
Query: 419 TGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLA 478
G IP I L + L + +G+IP L +L L+ N L+G++P I+ L
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 479 QLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCV 538
L + N +S I SY + L +S N L+G IP +
Sbjct: 150 NLVGITFDGNRISGAIP---DSYG---SFSKLF-----TSMTISRNRLTGKIPPTFANLN 198
Query: 539 VV--------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590
+ L G G + K++L+ N L+ + G L LDL N
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY 257
Query: 591 G 591
G
Sbjct: 258 G 258
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 5e-46
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 16/241 (6%)
Query: 116 SLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV 175
+L GP+ P + L++L L ++ + G +S +K L L N LSG+LP +
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 176 LTWLETLSLCSNSFTGEMPSELGDMKQL-KSLDFSGNGFNGTVPIRLGELTRLQDLDLSD 234
L L ++ N +G +P G +L S+ S N G +P L L +DLS
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206
Query: 235 NLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSEL 294
N+L G +V + ++ + ++ N L+ ++ ++ K L+ L N+ G++ L
Sbjct: 207 NMLEGDASVLFG-SDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 295 GNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNC 354
K L S N L G +P G + + NN+ + PL C
Sbjct: 265 TQLKF-------LHSLNVS--FNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPL--PAC 312
Query: 355 S 355
+
Sbjct: 313 T 313
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 3e-71
Identities = 108/494 (21%), Positives = 172/494 (34%), Gaps = 37/494 (7%)
Query: 112 LRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPS 171
L + S++ + L L+LS N L L+ L+ L L N++
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163
Query: 172 QLGVL--TWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGE---LTR 226
+L + + L+ L L SN P + +L L + ++ +L T
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223
Query: 227 LQDLDLSDNLLSGSLTVSLFTNLQ--SLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGIN 284
+++L LS++ LS + + F L+ +L+ LD+S N L+ + L +L +L N
Sbjct: 224 IRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282
Query: 285 QFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFI 344
L N + + + S + L +E + + +N
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342
Query: 345 GRIPLEVGNCSMLKYIRLSNNKLSGSIPRELN----DSESLVEINLDGNMLSGTIEDVFG 400
G LKY+ LSN+ S L +NL N +S D F
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402
Query: 401 RCTNLSQLEKLDLSSNMLTGRIP-KEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNIL 459
L LE LDL N + + +E L +I + L+ N + SL L
Sbjct: 403 ---WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459
Query: 460 ELGNNNLNG--SIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYR 517
L L S P L L LDLS NN++ + + + L
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA----NINDDMLE--GLEKL------E 507
Query: 518 KFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLN 577
DL +N L+ G L LS LNL N + F +L
Sbjct: 508 ILDLQHNNLARLWKH-------ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560
Query: 578 GLTNLDLSYNEFDG 591
L +DL N +
Sbjct: 561 ELKIIDLGLNNLNT 574
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 3e-69
Identities = 102/497 (20%), Positives = 173/497 (34%), Gaps = 43/497 (8%)
Query: 116 SLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV 175
L+ + S+L L++ N + L LK+L+L N+LS
Sbjct: 36 QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95
Query: 176 LTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDN 235
T L L L SNS + K L +LD S NG + T +L LQ+L LS+N
Sbjct: 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155
Query: 236 LLSGSLTVSLFTNLQ--SLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSE 293
+ L SL L++S+N + P + +L +L Q S+ +
Sbjct: 156 KIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214
Query: 294 LGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLG--KWNQMESVWLNNNQFIGRIPLEV 351
L S + L + +QLS + KW + + L+ N
Sbjct: 215 LCLELANTS-IRNLSL-----SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268
Query: 352 GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDV------FGRCTNL 405
L+Y L N + L+ ++ +NL + +I L
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328
Query: 406 SQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIP----MRLGDSTSLNILEL 461
LE L++ N + G L +++ L L+++F + + L+IL L
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388
Query: 462 GNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDL 521
N ++ + + L L+ LDL N + + + + + ++ L
Sbjct: 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL---TGQEWR--GLENIFE------IYL 437
Query: 522 SYNMLSGPIPKELGSC----VVVLTG-------YIPRSLGHLSCSVKLNLSGNKLSVLVP 570
SYN ++L P L L+LS N ++ +
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497
Query: 571 TSFGNLNGLTNLDLSYN 587
L L LDL +N
Sbjct: 498 DMLEGLEKLEILDLQHN 514
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 1e-68
Identities = 97/510 (19%), Positives = 161/510 (31%), Gaps = 50/510 (9%)
Query: 116 SLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSP--QVSNLKRLKMLSLGENQLSGSLPSQL 173
L L L+ L LS N + S + LK L L NQ+ P
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191
Query: 174 GVLTWLETLSLCSNSFTGEMPSELGD---MKQLKSLDFSGNGFNGTVPIRLGEL--TRLQ 228
+ L L L + + +L +++L S + + T L T L
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251
Query: 229 DLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLS---------DH 279
LDLS N L+ + F L L Y + N + + L +
Sbjct: 252 MLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310
Query: 280 YLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLN 339
+ + K L+ N + G + ++ + L+
Sbjct: 311 SISLASLPKIDDFSFQWLKC-------LEHLNME--DNDIPGIKSNMFTGLINLKYLSLS 361
Query: 340 NNQF-IGRIPLEVG---NCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTI 395
N+ + + E S L + L+ NK+S + L ++L N + +
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421
Query: 396 E-DVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG--SIPMRLGD 452
+ L + ++ LS N + S+Q L L S P
Sbjct: 422 TGQEWR---GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478
Query: 453 STSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSY 512
+L IL+L NNN+ + + L +L+ LDL +NNL+R I L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL----WKHANPGGPIYFLKG 534
Query: 513 SHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTGYIPRSLGHLSCSVKLNLSGN 563
+ +L N + + L + LNL N
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
Query: 564 KLSVLVPTSFG-NLNGLTNLDLSYNEFDGN 592
++ + FG LT LD+ +N FD
Sbjct: 595 LITSVEKKVFGPAFRNLTELDMRFNPFDCT 624
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 7e-65
Identities = 92/484 (19%), Positives = 142/484 (29%), Gaps = 53/484 (10%)
Query: 128 LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187
+ + VLNL+ N L P+ + +L L +G N +S P L L+ L+L N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFT 247
+ L L N + L LDLS N LS S +
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQV 142
Query: 248 NLQSLSYLDVSNNLLSGNIPPEIS--HLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLA 305
L++L L +SNN + E+ L L NQ
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR------ 196
Query: 306 ELQIFTFSAGMNQLSGPLPSWLG---KWNQMESVWLNNNQFIGRIPLEVGNCSM--LKYI 360
L + QL L L + ++ L+N+Q L +
Sbjct: 197 -LFGLFLNN--VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253
Query: 361 RLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQL------EKLDLS 414
LS N L+ L L+ N + N+ L K +S
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313
Query: 415 SNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKI 474
L L+ ++ L + N G +L L L N+ +
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373
Query: 475 A----DLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPI 530
+ L L+L+ N +S+ S F + L DL N + +
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIE----SDAFS--WLGHLEV------LDLGLNEIGQEL 421
Query: 531 PKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590
+ L ++ LS NK L SF + L L L
Sbjct: 422 T--------------GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467
Query: 591 GNNK 594
+
Sbjct: 468 NVDS 471
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 1e-61
Identities = 95/453 (20%), Positives = 154/453 (33%), Gaps = 51/453 (11%)
Query: 154 RLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGF 213
++ +L+ +P L T + L+L N + QL SLD N
Sbjct: 5 SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 214 NGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHL 273
+ P +L L+ L+L N LS L+ F +L+ L + +N +
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 274 KKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQM 333
K L L N + + +N LQ S N++ L +
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLEN-------LQELLLSN--NKIQALKSEELDIFANS 171
Query: 334 --ESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSE---SLVEINLDG 388
+ + L++NQ P L + L+N +L S+ +L S+ ++L
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231
Query: 389 NMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPM 448
+ LS T F + L LDLS N L L ++ L N
Sbjct: 232 SQLSTTSNTTFLGL-KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290
Query: 449 RLGDSTSLNILELGNN---------NLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHS 499
L ++ L L + +L L L+ L++ N++ S
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK----S 346
Query: 500 SYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLN 559
+ F + +L + LS + S LT SL H + LN
Sbjct: 347 NMFT--GLINL------KYLSLSNSFTSLRT----------LTNETFVSLAHSPLHI-LN 387
Query: 560 LSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592
L+ NK+S + +F L L LDL NE
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 199 bits (509), Expect = 4e-55
Identities = 92/477 (19%), Positives = 162/477 (33%), Gaps = 52/477 (10%)
Query: 124 LLFDLSKLRVLNLSQNLLFGQPSPQVSNLK--RLKMLSLGENQLSGSLPSQLGVLTWLET 181
L + +R L+LS + L + LK L ML L N L+ L LE
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276
Query: 182 LSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTV---------PIRLGELTRLQDLDL 232
L N+ L + ++ L+ + ++ L L+ L++
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336
Query: 233 SDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEIS----HLKKLSDHYLGINQFTG 288
DN + G + ++FT L +L YL +SN+ S + L L N+ +
Sbjct: 337 EDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395
Query: 289 SIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSW-LGKWNQMESVWLNNNQFIGRI 347
+ L++ +N++ L + ++L+ N+++
Sbjct: 396 IESDAFSWLGH-------LEVLDLG--LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446
Query: 348 PLEVGNCSMLKYIRLSNNKLSG--SIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNL 405
L+ + L L S P +L ++L N ++ +D+ L
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE---GL 503
Query: 406 SQLEKLDLSSNMLT--------GRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLN 457
+LE LDL N L G + L + IL L SN F+ D L
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563
Query: 458 ILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYR 517
I++LG NNLN + L+ L+L N ++ F N
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF-----------RNLT 612
Query: 518 KFDLSYNMLSGPIP--KELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTS 572
+ D+ +N + + IP H C+ + G + + +S
Sbjct: 613 ELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSS 669
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 2e-48
Identities = 91/403 (22%), Positives = 131/403 (32%), Gaps = 61/403 (15%)
Query: 202 QLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNL 261
+ D S VP L T + L+L+ N L L + FT L+ LDV N
Sbjct: 5 SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNT 60
Query: 262 LSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSG 321
+S P L L L N+ + C N L EL
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN----LTEL-------------- 102
Query: 322 PLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESL 381
L +N L + LS+N LS + E+L
Sbjct: 103 ---------------HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147
Query: 382 VEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNF 441
E+ L N + + S L+KL+LSSN + P + + L LN+
Sbjct: 148 QELLLSNNKIQALKSEELDIF-ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 442 FNGSIPMRLGDS---TSLNILELGNNNLNGSIPEKIADLA--QLQFLDLSYNNLSRPILS 496
S+ +L TS+ L L N+ L+ + L L LDLSYNNL+
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN----- 261
Query: 497 KHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSV 556
V ++ F L YN + L V R L
Sbjct: 262 -------VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV------RYLNLKRSFT 308
Query: 557 KLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGNNKFCEKN 599
K ++S L + SF L L +L++ N+ G
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 2e-43
Identities = 68/388 (17%), Positives = 120/388 (30%), Gaps = 70/388 (18%)
Query: 225 TRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGIN 284
+ D S L+ + L TN+ L++++N L + +L+ +G N
Sbjct: 4 VSHEVADCSHLKLT-QVPDDLPTNIT---VLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59
Query: 285 QFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFI 344
+ ++ + L +N+
Sbjct: 60 TISKLEPELCQKLPM---------------------------------LKVLNLQHNELS 86
Query: 345 GRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTN 404
C+ L + L +N + ++L+ ++L N LS T
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV---Q 143
Query: 405 LSQLEKLDLSSNMLTGRIPKEIG--NLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELG 462
L L++L LS+N + +E+ S++ L+L+SN P L L L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203
Query: 463 NNNLNGSIPEKIAD---LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKF 519
N L S+ EK+ ++ L LS + LS ++ F + +L
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS----NTTFLGLKWTNL------TML 253
Query: 520 DLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGL 579
DLSYN L+ L L N + L S L +
Sbjct: 254 DLSYNNLNVVGNDSFAWL---------PQL------EYFFLEYNNIQHLFSHSLHGLFNV 298
Query: 580 TNLDLSYNEFDGNNKFCEKNGIGGGGFG 607
L+L + + I F
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQ 326
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 4e-12
Identities = 34/164 (20%), Positives = 53/164 (32%), Gaps = 1/164 (0%)
Query: 110 QVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSL 169
L + G L LS L +LNL N P +L LK++ LG N L+
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576
Query: 170 PSQLGVLTWLETLSLCSNSFTGEMPSELGD-MKQLKSLDFSGNGFNGTVPIRLGELTRLQ 228
S L++L+L N T G + L LD N F+ T + +
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636
Query: 229 DLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISH 272
+ + LS + + + + H
Sbjct: 637 ETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAHHHHHH 680
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 8e-64
Identities = 99/499 (19%), Positives = 165/499 (33%), Gaps = 44/499 (8%)
Query: 112 LRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPS 171
L ++ LS L L L+ N + S L L+ L E L+
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 172 QLGVLTWLETLSLCSNSFTG-EMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDL 230
+G L L+ L++ N ++P ++ L+ LD S N L L ++ L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 231 DLSDNLLSGSLTV---SLFTNLQSLSYLDVSNNLLSGNIPPE-ISHLKKLSDHYLGINQF 286
+LS +L + F + L L + NN S N+ I L L H L + +F
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 287 TGSIQSELGNCKNFKSVLAELQIFTFS-AGMNQLSGPLPSWLGKWNQMESVWLNNNQFIG 345
E + + L L I F A ++ + + S L +
Sbjct: 238 RNEGNLEKFDKSALEG-LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Query: 346 RIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNL 405
+++ L N K +L + L + G + +L
Sbjct: 297 VKDF--SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--------DL 346
Query: 406 SQLEKLDLSSNMLT--GRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGN 463
LE LDLS N L+ G + S++ L L+ N + L L+ +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 405
Query: 464 NNLNGSIPEKI-ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLS 522
+NL + L L +LD+S+ + + F+ + L ++
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF----NGIFN--GLSSL------EVLKMA 453
Query: 523 YNMLSGPIPKELGSCVVVL----------TGYIPRSLGHLSCSVKLNLSGNKLSVLVPTS 572
N ++ + + L P + LS LN+S N L
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Query: 573 FGNLNGLTNLDLSYNEFDG 591
+ LN L LD S N
Sbjct: 514 YKCLNSLQVLDYSLNHIMT 532
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 2e-58
Identities = 78/476 (16%), Positives = 150/476 (31%), Gaps = 55/476 (11%)
Query: 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188
+ L+LS N L S + L++L L ++ L+ L TL L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTN 248
+ L+ L +G L L++L+++ NL+ F+N
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 249 LQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQ 308
L +L +LD+S+N + ++ L ++ L ++ + E++
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ------PGAFKEIR 201
Query: 309 IFTFSAGMNQLSGPLPS-WLGKWNQMESVWLNNNQFIGRIPLEV---GNCSMLKYIRLSN 364
+ + N S + + +E L +F LE L + +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 365 NKLS------GSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNML 418
+L+ I N ++ +L + + + + L+L +
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-----SYNFGWQHLELVNCKF 316
Query: 419 TGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLN--GSIPEKIAD 476
++ +L+ L G D SL L+L N L+ G +
Sbjct: 317 GQFPTLKLKSLKR-----LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 477 LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGS 536
L++LDLS+N + + D ++ L +
Sbjct: 372 TTSLKYLDLSFNGVIT-------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSV-- 416
Query: 537 CVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592
L + L++S V F L+ L L ++ N F N
Sbjct: 417 ------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 206 bits (525), Expect = 8e-58
Identities = 89/496 (17%), Positives = 159/496 (32%), Gaps = 67/496 (13%)
Query: 116 SLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQV-SNLKRLKMLSLGENQLSGSLPSQLG 174
+L + + L L+ LN++ NL+ P+ SNL L+ L L N++ + L
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170
Query: 175 VLTWLE----TLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVP-IRLGELTRLQD 229
VL + +L L N P +++ L L N + V + L L+
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEV 229
Query: 230 LDLSDNLLSGS--LTVSLFTNLQSLSYLDVSNNLLS------GNIPPEISHLKKLSDHYL 281
L L + L+ L L + L+ +I + L +S L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289
Query: 282 GINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNN 341
S Q + L + L
Sbjct: 290 VSVTIERVKDF---------SYNFGWQHLELV--NCKFGQFPTLKLKSLKR-----LTFT 333
Query: 342 QFIGRIPLEVGNCSMLKYIRLSNNKLS--GSIPRELNDSESLVEINLDGNMLSGTIEDVF 399
G + L+++ LS N LS G + + SL ++L N + +
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-- 391
Query: 400 GRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDSTSLNI 458
L QLE LD + L + +LR++ L ++ + +SL +
Sbjct: 392 --FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 459 LELGNNNLNGSI-PEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYR 517
L++ N+ + P+ +L L FLDLS L + + + + +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT------------AFNSLSSLQ 497
Query: 518 KFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNL- 576
++S+N SL L+ S N + +
Sbjct: 498 VLNMSHNNFFSLDTFPYKCL---------NSL------QVLDYSLNHIMTSKKQELQHFP 542
Query: 577 NGLTNLDLSYNEFDGN 592
+ L L+L+ N+F
Sbjct: 543 SSLAFLNLTQNDFACT 558
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 1e-52
Identities = 68/440 (15%), Positives = 139/440 (31%), Gaps = 45/440 (10%)
Query: 119 GPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKM----LSLGENQLSGSLPSQLG 174
+ +L+ L L+LS N + + L ++ + L L N ++ P
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198
Query: 175 VLTWLETLSLCSNSFTGEMPSE-LGDMKQLKSLDFSGNGFNGTVPIR---LGELTRLQDL 230
+ L L+L +N + + + + L+ F + L L +L
Sbjct: 199 EIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257
Query: 231 DLSDNLL-----SGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQ 285
+ + L + LF L ++S + + + + S+ L +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCK 315
Query: 286 FTGSIQSELGNCKNF------------KSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQM 333
F +L + K + L L+ S G +
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 334 ESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRE-LNDSESLVEINLDGNMLS 392
+ + L+ N I + L+++ ++ L +L+ +++
Sbjct: 376 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 393 GTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLG 451
+F LS LE L ++ N +I LR++ L L+ P
Sbjct: 435 VAFNGIFN---GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 452 DSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLS 511
+SL +L + +NN L LQ LD S N++ + + L+
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-----SSLA 546
Query: 512 YSHNYRKFDLSYNMLSGPIP 531
+ +L+ N +
Sbjct: 547 F------LNLTQNDFACTCE 560
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 6e-50
Identities = 70/414 (16%), Positives = 125/414 (30%), Gaps = 37/414 (8%)
Query: 93 IANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQV-SN 151
L+ L ++ L + L + + P F +L L L N
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223
Query: 152 LKRLKMLSLGENQLSGS---LPSQLGVLTWLETLSLCSNS------FTGEMPSELGDMKQ 202
L L++ L + L L L++ + ++ +
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283
Query: 203 LKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL 262
+ S Q L+L + +L+ L++
Sbjct: 284 VSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTS-----N 335
Query: 263 SGNIPPEISHLKKLSDHYLGINQ--FTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLS 320
G L L L N F G + L+ S N +
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-------LKYLDLS--FNGVI 386
Query: 321 GPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDSE 379
+ S Q+E + ++ V + L Y+ +S+ + N
Sbjct: 387 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 380 SLVEINLDGNMLSGTI-EDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLN 438
SL + + GN D+F L L LDLS L P +L S+Q+L ++
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFT---ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Query: 439 SNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLA-QLQFLDLSYNNLS 491
N F SL +L+ N++ S +++ L FL+L+ N+ +
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-32
Identities = 58/299 (19%), Positives = 103/299 (34%), Gaps = 18/299 (6%)
Query: 95 NALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLL--FGQPSPQVSNL 152
L L+ + L S KG + DL L L+LS+N L G S
Sbjct: 314 CKFGQFPTLKLKS-LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372
Query: 153 KRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMP-SELGDMKQLKSLDFSGN 211
LK L L N + + S L LE L ++ S ++ L LD S
Sbjct: 373 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 212 GFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEIS 271
L+ L+ L ++ N + +FT L++L++LD+S L P +
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 272 HLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKW- 330
L L + N F + LQ+ +S N + L +
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNS-------LQVLDYSL--NHIMTSKKQELQHFP 542
Query: 331 NQMESVWLNNNQFIGRIPLE--VGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLD 387
+ + + L N F + + + + + ++ + P + ++ +N+
Sbjct: 543 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 5e-31
Identities = 49/283 (17%), Positives = 85/283 (30%), Gaps = 40/283 (14%)
Query: 337 WLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIE 396
L+ N + L+ + LS ++ L + L GN +
Sbjct: 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93
Query: 397 DVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG-SIPMRLGDSTS 455
F LS L+KL L IG+L++++ L + N +P + T+
Sbjct: 94 GAFS---GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 456 LNILELGNNNLNGSIPEKIADLAQLQF----LDLSYNNLSRPILSKHSSYFHEVNIPDLS 511
L L+L +N + + L Q+ LDLS N ++ F E+ +
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----FKEIRL---- 202
Query: 512 YSHNYRKFDLSYNMLSGPIPKELGSCVVVL----------------TGYIPRSLGHLSCS 555
K L N S + K + L + +L L
Sbjct: 203 -----HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257
Query: 556 VKLNLSGNKLSVL---VPTSFGNLNGLTNLDLSYNEFDGNNKF 595
L + F L +++ L + F
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 5e-30
Identities = 48/232 (20%), Positives = 79/232 (34%), Gaps = 31/232 (13%)
Query: 362 LSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGR 421
IP L S ++L N L F + +L+ LDLS +
Sbjct: 14 CMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFF---SFPELQVLDLSRCEIQTI 67
Query: 422 IPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQ 481
+L + L L N +SL L NL I L L+
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 482 FLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVL 541
L++++N + L ++ S N+ +L + DLS N + +L
Sbjct: 128 ELNVAHNLIQSFKLPEYFS-----NLTNLEH------LDLSSNKIQSIYCTDLR------ 170
Query: 542 TGYIPRSLGHLS-CSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592
L + ++ L+LS N ++ + P +F + L L L N N
Sbjct: 171 ------VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLN 215
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 215 bits (550), Expect = 3e-61
Identities = 93/485 (19%), Positives = 169/485 (34%), Gaps = 53/485 (10%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186
L L L+L++ ++ + RL L L N L + L L+ L
Sbjct: 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114
Query: 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLF 246
+ L + K L+SL N + + +L+ LD +N + L+
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDM 173
Query: 247 TNLQSLS--YLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFK--- 301
++LQ + L+++ N ++G I P G Q I L N
Sbjct: 174 SSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232
Query: 302 ----------------SVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIG 345
L E+ + + + + + ++ ++ + L +
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LS 291
Query: 346 RIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNL 405
+P + S LK + LS NK ++ SL +++ GN + NL
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE--NL 349
Query: 406 SQLEKLDLSSNMLT--GRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGN 463
L +LDLS + + ++ NL +Q L L+ N + L +L+L
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409
Query: 464 NNLNGSIPEKI-ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLS 522
L + +L L+ L+LS++ L E L + +L
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLL---------DISSEQLFDGLP---ALQHLNLQ 457
Query: 523 YNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNL 582
N ++ S ++LG L L LS LS + +F +L + ++
Sbjct: 458 GNHFPKGNIQKTNSL---------QTLGRLE---ILVLSFCDLSSIDQHAFTSLKMMNHV 505
Query: 583 DLSYN 587
DLS+N
Sbjct: 506 DLSHN 510
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 6e-59
Identities = 94/493 (19%), Positives = 171/493 (34%), Gaps = 38/493 (7%)
Query: 116 SLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV 175
L L L+ L Q + + N K L+ L LG N +S +
Sbjct: 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151
Query: 176 LTWLETLSLCSNSFTGEMPSELGDMKQLK--SLDFSGNGFNGTVPIRLGELTRLQDLDLS 233
L+ L +N+ ++ ++Q SL+ +GN + + Q L+
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFG 210
Query: 234 DNLLSGSLTVSL-FTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGI--NQFTGSI 290
+ L + +QSL + P L ++S + + + F
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270
Query: 291 QSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLE 350
+ LQ +A LS LPS L + ++ + L+ N+F +
Sbjct: 271 SNTFHCFSG-------LQELDLTA--THLSE-LPSGLVGLSTLKKLVLSANKFENLCQIS 320
Query: 351 VGNCSMLKYIRLSNNKLSGSIPRE-LNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLE 409
N L ++ + N + L + E+L E++L + + T + + NLS L+
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-TSDCCNLQLRNLSHLQ 379
Query: 410 KLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMR-LGDSTSLNILELGNNNLNG 468
L+LS N + +++L L + L +L L ++ L+
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439
Query: 469 SIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSG 528
S + L LQ L+L N+ + L LS+ LS
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHF---------PKGNIQKTNSLQTLGRLEILVLSFCDLSS 490
Query: 529 PIPKELGSCVVV---------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGL 579
S ++ LT +L HL + LNL+ N +S+++P+ L+
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-GIYLNLASNHISIILPSLLPILSQQ 549
Query: 580 TNLDLSYNEFDGN 592
++L N D
Sbjct: 550 RTINLRQNPLDCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 6e-58
Identities = 97/484 (20%), Positives = 165/484 (34%), Gaps = 62/484 (12%)
Query: 128 LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187
+ L S N+L + S L L L L Q+ L+TL L +N
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFT 247
+ L K LK L F G + I L L+ L L N +S S+ +
Sbjct: 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGF 150
Query: 248 NLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAEL 307
+ L LD NN + ++S L++ ++ L +N
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN----------------------- 187
Query: 308 QIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSM--LKYIRLSNN 365
N ++G + +S+ Q + I + N ++ L +
Sbjct: 188 --------GNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238
Query: 366 KLSGSIPRELNDSE--SLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIP 423
P S+ INL + + F S L++LDL++ L+ +P
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH---CFSGLQELDLTATHLS-ELP 294
Query: 424 KEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEK-IADLAQLQF 482
+ L +++ L L++N F + + SL L + N + + +L L+
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354
Query: 483 LDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV-- 540
LDLS++++ N+ L + +LSYN + C +
Sbjct: 355 LDLSHDDIETSDCCNLQLR----NLSHL------QSLNLSYNEPLSLKTEAFKECPQLEL 404
Query: 541 -------LTGYIPRS-LGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592
L +S +L LNLS + L + F L L +L+L N F
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 593 NKFC 596
N
Sbjct: 465 NIQK 468
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 5e-52
Identities = 84/459 (18%), Positives = 153/459 (33%), Gaps = 57/459 (12%)
Query: 156 KMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNG 215
K + L+ +P L E L N + + L LD +
Sbjct: 15 KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71
Query: 216 TVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKK 275
RL L L+ N L + + + ++L +L +S + + K
Sbjct: 72 IHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130
Query: 276 LSDHYLGINQFTGSIQSELGNCKNFK-----------------SVLAELQIFTFSAGMNQ 318
L YLG N + + + K S L + + + N
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190
Query: 319 LSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSM--LKYIRLSNNKLSGSIPRELN 376
++G + +S+ Q + I + N ++ L + P
Sbjct: 191 IAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249
Query: 377 DSE--SLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQI 434
S+ INL + + F S L++LDL++ L+ +P + L +++
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFH---CFSGLQELDLTATHLS-ELPSGLVGLSTLKK 305
Query: 435 LKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEK-IADLAQLQFLDLSYNNLSRP 493
L L++N F + + SL L + N + + +L L+ LDLS++++
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365
Query: 494 ILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLS 553
N+ L + +LSYN + C L
Sbjct: 366 DCCNLQLR----NLSHL------QSLNLSYNEPLSLKTEAFKEC---------PQLEL-- 404
Query: 554 CSVKLNLSGNKLSVLVPTS-FGNLNGLTNLDLSYNEFDG 591
L+L+ +L V S F NL+ L L+LS++ D
Sbjct: 405 ----LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 4e-42
Identities = 82/442 (18%), Positives = 142/442 (32%), Gaps = 32/442 (7%)
Query: 56 NAIQAFDFIIFNFNSLMMGKLRLRQPYKTLSRRLGLAIANALKDLEELLLRVVYQVLRTQ 115
N I + F+ L L GL + ++ L + +
Sbjct: 189 NDIAGIEPGAFDSAVFQ--SLNFGGTQNLLVIFKGLKNST-IQSLWLGTFED----MDDE 241
Query: 116 SLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV 175
+ V L ++S + +NL ++ F S L+ L L LS LPS L
Sbjct: 242 DISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299
Query: 176 LTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIR-LGELTRLQDLDLSD 234
L+ L+ L L +N F + L L GN + L L L++LDLS
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359
Query: 235 NLLSGS-LTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSI-QS 292
+ + S NL L L++S N +L L + QS
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 293 ELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVG 352
N L++ S + L ++ + L N F +
Sbjct: 420 PFQNLHL-------LKVLNLSH--SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470
Query: 353 ---NCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLE 409
L+ + LS LS + + ++L N L+ + + +
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI---- 526
Query: 410 KLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGS 469
L+L+SN ++ +P + L + + L N + + L + L +
Sbjct: 527 YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI----YFLEWYKENMQKLEDT 582
Query: 470 IPEKIADLAQLQFLDLSYNNLS 491
+ L+ + LS LS
Sbjct: 583 EDTLCENPPLLRGVRLSDVTLS 604
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 7e-37
Identities = 65/393 (16%), Positives = 123/393 (31%), Gaps = 71/393 (18%)
Query: 204 KSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263
K+ + G N +P L + L+ S N+L ++ + F+ L +L++LD++ +
Sbjct: 15 KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY 70
Query: 264 GNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPL 323
+L L N ++ L K
Sbjct: 71 WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA------------------------ 106
Query: 324 PSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVE 383
++ ++ + + N L+ + L +N +S + +E L
Sbjct: 107 ---------LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157
Query: 384 INLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFN 443
++ N + ++ + L L+L+ N + G I + Q L
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNL 215
Query: 444 GSIPMRLGDST--SLNILELGNNNLNGSIPEKIADLA--QLQFLDLSYNNLSRPILSKHS 499
I L +ST SL + + + P L ++ ++L +
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-------- 267
Query: 500 SYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLN 559
++ ++ DL+ LS +P L LS KL
Sbjct: 268 ----NISSNTFHCFSGLQELDLTATHLS----------------ELPSGLVGLSTLKKLV 307
Query: 560 LSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592
LS NK L S N LT+L + N
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 2e-58
Identities = 75/524 (14%), Positives = 166/524 (31%), Gaps = 81/524 (15%)
Query: 112 LRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPS 171
L KG V + L++L+VL+ + M ++++
Sbjct: 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389
Query: 172 -QLGVLTWLETLSLCSNSFTG----------------------------EMPSELGDMKQ 202
L L L ++ + + + +
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTK 449
Query: 203 LKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL 262
L+ + F+ + F +D + + +S ++NL+ L+ +++ N
Sbjct: 450 LQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEELS-WSNLKDLTDVELYNCPN 503
Query: 263 SGNIPPEISHLKKLSDHYLGINQFTG--SIQSELGNCKNFKSVLAELQIFTFSAGMNQLS 320
+P + L +L + N+ ++++ + + ++QIF N L
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY--NNLE 561
Query: 321 G-PLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPREL-NDS 378
P + L K ++ + +N+ + + G L ++L N++ IP + +
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFT 618
Query: 379 ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIG------NLRSI 432
+ + + N L I ++F ++ + +D S N + + I +
Sbjct: 619 DQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINA 675
Query: 433 QILKLNSNFFNGSIPMRLGDSTSLNILELGNNNL-------NGSIPEKIADLAQLQFLDL 485
+ L+ N + ++ + L NN + + L +DL
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735
Query: 486 SYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYI 545
+N L+ F +P L D+SYN S P + +
Sbjct: 736 RFNKLTSLSDD-----FRATTLPYL------SNMDVSYNCFSS-FPTQPLNS-------- 775
Query: 546 PRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEF 589
L + + GN++ PT L L + N+
Sbjct: 776 -SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 208 bits (530), Expect = 5e-57
Identities = 85/493 (17%), Positives = 157/493 (31%), Gaps = 68/493 (13%)
Query: 134 LNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEM 193
N ++ QP + N R+ LSL G +P +G LT L+ LS ++S T
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363
Query: 194 PSELGDMKQLKSLDFSGNGFNGTV-PIRLGELTRLQDLDLSDNLLS-----GSLTVSLFT 247
+ + + + L RL DL + ++ +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423
Query: 248 NLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAEL 307
+L+ +++N + I I L KL Y + FT + N
Sbjct: 424 SLKDTQIGNLTNRITF--ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY----- 476
Query: 308 QIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKL 367
+ + V L N + ++P + + L+ + ++ N+
Sbjct: 477 ---------AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527
Query: 368 SG---------SIPRELNDSESLVEINLDGNMLSG-TIEDVFGRCTNLSQLEKLDLSSNM 417
+ + + + + N L + +L LD N
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ---KMVKLGLLDCVHNK 584
Query: 418 LTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTS-LNILELGNNNLNGSIPEK--I 474
+ + G + LKL+ N IP T + L +N L IP
Sbjct: 585 VR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640
Query: 475 ADLAQLQFLDLSYNNLSR--PILSKHSSYFHEVNIPDLSYSHNY---------------R 517
+ + +D SYN + +S + +N ++ S+N
Sbjct: 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700
Query: 518 KFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPT-SFGNL 576
LS N+++ IP+ + + ++L NKL+ L L
Sbjct: 701 TIILSNNLMTS-IPENSLKP-------KDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752
Query: 577 NGLTNLDLSYNEF 589
L+N+D+SYN F
Sbjct: 753 PYLSNMDVSYNCF 765
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 8e-57
Identities = 78/510 (15%), Positives = 158/510 (30%), Gaps = 73/510 (14%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184
L + ++ L+L+ G+ + L LK+LS G + + S +
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378
Query: 185 CSNSFTGEMPSELGDMKQ-LKSLDFSGNGFNG---------------------------- 215
+ D Q L D + N
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438
Query: 216 TVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKK 275
+ + LT+LQ + +++ + + N S+LK
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQYENEELSWSNLKD 492
Query: 276 LSDHYLGINQFTGSIQSELGNCKNFKSV-LAELQIFTFSAGMNQLSGPLPSWLGKWNQME 334
L+D L + L + +S+ +A + + + + L +++
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-LADDEDTGPKIQ 551
Query: 335 SVWLNNNQFIGRIPLEV--GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLS 392
++ N + P L + +NK+ + L ++ LD N +
Sbjct: 552 IFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE 608
Query: 393 GTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPK--EIGNLRSIQILKLNSNFF-----NGS 445
ED Q+E L S N L IP ++ + + + N N S
Sbjct: 609 EIPEDFCA---FTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664
Query: 446 IPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEV 505
M + + + L N + E A + + + LS N ++ + ++S +
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS--IPENSLKPKDG 722
Query: 506 NIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKL 565
N + DL +N L+ + + + +L +LS +++S N
Sbjct: 723 NYKNTY---LLTTIDLRFNKLTS-LSDDFRAT----------TLPYLS---NMDVSYNCF 765
Query: 566 SVLVPTSFGNLNGLTNLDLSYNEFDGNNKF 595
S PT N + L + + N+
Sbjct: 766 SSF-PTQPLNSSQLKAFGIRHQRDAEGNRI 794
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 203 bits (517), Expect = 3e-55
Identities = 78/581 (13%), Positives = 166/581 (28%), Gaps = 105/581 (18%)
Query: 35 KSVPLDLQNHPMRSKEQFNIKNAIQAFDFIIFNFNSLMMGKLRLRQPYKTLSRRLGLAIA 94
+ + K+ I+ +F + L Q + +
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419
Query: 95 NALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKR 154
++ L++ + + + +S + L+KL+++ + +
Sbjct: 420 DSRISLKDTQIGNLTNRITF------ISKAIQRLTKLQIIYFANSPFTYDNIAV-----D 468
Query: 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFN 214
+ + + + L L + L + ++P L D+ +L+SL+ + N
Sbjct: 469 WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528
Query: 215 G---------TVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGN 265
+ ++Q + N L + + L LD +N +
Sbjct: 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-- 586
Query: 266 IPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSG-PLP 324
KL+D L NQ I + +++ FS N+L P
Sbjct: 587 HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAF------TDQVEGLGFSH--NKLKYIPNI 637
Query: 325 SWLGKWNQMESVWLNNNQFIGRIP-----LEVGNCSMLKYIRLSNNKLSGSIPRELNDSE 379
M SV + N+ ++ + LS N++
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697
Query: 380 SLVEINLDGNMLSGTIEDVFGRC----TNLSQLEKLDLSSNMLTGRIPKEI--GNLRSIQ 433
+ I L N+++ E+ N L +DL N LT + + L +
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLS 756
Query: 434 ILKLNSNFFNGSIPMRLGDSTSLNILEL------GNNNLNGSIPEKIADLAQLQFLDLSY 487
+ ++ N F+ S P + +S+ L + N + P I L L +
Sbjct: 757 NMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815
Query: 488 NNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPR 547
N++ + + ++L
Sbjct: 816 NDIRK-------------------------------------VDEKL------------- 825
Query: 548 SLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNE 588
L L+++ N + TS L Y++
Sbjct: 826 -TPQLY---ILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 5e-52
Identities = 77/473 (16%), Positives = 139/473 (29%), Gaps = 66/473 (13%)
Query: 135 NLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMP 194
N + N K L + +Q L + + LSL G +P
Sbjct: 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN----NGRVTGLSLAGFGAKGRVP 340
Query: 195 SELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSY 254
+G + +LK L F + + + E + + + Q L+
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400
Query: 255 LDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTG------SIQSELGNCKNFKSVLAELQ 308
D+ + ++ N PE+ +KK S L Q I + LQ
Sbjct: 401 SDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTK-------LQ 451
Query: 309 IFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLS 368
I F+ + + + E + + L N L + L N
Sbjct: 452 IIYFAN--SPFTYDNIA-----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504
Query: 369 GSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCT------NLSQLEKLDLSSNMLTGRI 422
+P L D L +N+ N + +++ + N L
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-F 563
Query: 423 PKE--IGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKI-ADLAQ 479
P + + + +L N + G + L L+L N + IPE A Q
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQ 620
Query: 480 LQFLDLSYNNLSRPILSKHSSYFHEVNIPD---LSYSHNYRKFDLSYNMLSGPIPKELGS 536
++ L S+N L IP+ + D SYN + + +
Sbjct: 621 VEGLGFSHNKLK--------------YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISC 665
Query: 537 CVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEF 589
+ + LS N++ F + ++ + LS N
Sbjct: 666 ---------SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 548 SLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGNNKFCEKNGI 601
L + L+L+G VP + G L L L + + + +
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 1e-52
Identities = 95/490 (19%), Positives = 152/490 (31%), Gaps = 61/490 (12%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186
L L L L+ N + S L L+ L E +L+ +G L L+ L++
Sbjct: 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137
Query: 187 NSFTG-EMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRL----QDLDLSDNLLSGSL 241
N ++P+ ++ L +D S N L L LD+S N + +
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FI 196
Query: 242 TVSLFTNLQSLSYLDVSNNLLSGNIPPE-ISHLKKLSDHYLGINQFTGSIQSELGNCKNF 300
F + L L + N S NI + +L L H L + +F E+
Sbjct: 197 QDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255
Query: 301 KSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIP------------ 348
+ L ++ I F + ++ L I +
Sbjct: 256 EG-LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLS 313
Query: 349 --------LEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFG 400
+ LK + L+ NK S I + SL ++L N LS + +
Sbjct: 314 IIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYS 371
Query: 401 RCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMR-LGDSTSLNIL 459
+ L LDLS N + L +Q L + L L
Sbjct: 372 DL-GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429
Query: 460 ELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKF 519
++ N L L L ++ N+ LS + + N
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS-----------NVFANTTNLTFL 478
Query: 520 DLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGL 579
DLS L +L L LN+S N L L + + L L
Sbjct: 479 DLSKCQLEQISWGVF------------DTLHRL---QLLNMSHNNLLFLDSSHYNQLYSL 523
Query: 580 TNLDLSYNEF 589
+ LD S+N
Sbjct: 524 STLDCSFNRI 533
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 2e-49
Identities = 89/487 (18%), Positives = 165/487 (33%), Gaps = 55/487 (11%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184
+ S+L+ L+LS+ + L L L L N + P LT LE L
Sbjct: 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNG-TVPIRLGELTRLQDLDLSDNLLSGSLTV 243
+G + LK L+ + N + +P LT L +DLS N + ++TV
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITV 170
Query: 244 SLFTNLQSLS----YLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKN 299
+ L+ LD+S N + I + KL + L N + +I +N
Sbjct: 171 NDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTC--LQN 227
Query: 300 FKSVLAELQIFTFSAGMNQLSGPLPSWLG--KWNQMESVWLNNNQFIGRIPLEVGNCSML 357
+ I L PS + ++ L ++ + +
Sbjct: 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287
Query: 358 KYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNM 417
+ L+ + ++ +++ L +L L+ L L+ N
Sbjct: 288 SAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPT------LDLPFLKSLTLTMNK 339
Query: 418 LTGRIPKEIGNLRSIQILKLNSNFFN--GSIPMRLGDSTSLNILELGNNNLNGSIPEKIA 475
+ I + L S+ L L+ N + G + SL L+L N +
Sbjct: 340 GS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM 396
Query: 476 DLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNY---------------RKFD 520
L +LQ LD ++ L R +++ S++ + L S+
Sbjct: 397 GLEELQHLDFQHSTLKR--VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454
Query: 521 LSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLT 580
++ N + + +L+ L+LS +L + F L+ L
Sbjct: 455 MAGNSFKDNTLSN-----------VFANTTNLT---FLDLSKCQLEQISWGVFDTLHRLQ 500
Query: 581 NLDLSYN 587
L++S+N
Sbjct: 501 LLNMSHN 507
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 1e-47
Identities = 88/494 (17%), Positives = 158/494 (31%), Gaps = 69/494 (13%)
Query: 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188
S + ++LS N L S SN L+ L L ++ L L L L N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTN 248
P + L++L +G+L L+ L+++ N + + F+N
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 249 LQSLSYLDVSNNLLSGNIPPEISHLKKLSDH----YLGINQFTGSIQSELGNCKNFKSV- 303
L +L ++D+S N + ++ L++ + +N IQ + +
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELT 210
Query: 304 -----------------LAELQIFTFS----AGMNQLSGPLPSWLG--KWNQMESVWLNN 340
LA L + L PS + ++ L
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270
Query: 341 NQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFG 400
++ + + + L+ + ++ +++ L
Sbjct: 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPT---- 324
Query: 401 RCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFN--GSIPMRLGDSTSLNI 458
+L L+ L L+ N + I + L S+ L L+ N + G + SL
Sbjct: 325 --LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380
Query: 459 LELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRK 518
L+L N + L +LQ LD ++ L R S F ++ L Y
Sbjct: 381 LDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVT---EFSAFL--SLEKLLY------ 428
Query: 519 FDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKL-SVLVPTSFGNLN 577
D+SY L L+ L ++GN + F N
Sbjct: 429 LDISYTNTKIDFDGIFL------------GLTSLN---TLKMAGNSFKDNTLSNVFANTT 473
Query: 578 GLTNLDLSYNEFDG 591
LT LDLS + +
Sbjct: 474 NLTFLDLSKCQLEQ 487
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 2e-40
Identities = 79/443 (17%), Positives = 133/443 (30%), Gaps = 61/443 (13%)
Query: 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFN 214
K + L N L + L+ L L + L +L +GN
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 215 GTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG-NIPPEISHL 273
P LT L++L + L+ SL L +L L+V++N + +P S+L
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152
Query: 274 KKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQM 333
L L N ++L + V L + +N + + + ++
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM-----SLNPIDF-IQDQAFQGIKL 206
Query: 334 ESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLS 392
+ L N I N + L RL + L
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE------------------RNLE 248
Query: 393 GTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGD 452
+ +++ E L+ + L ++ + L +
Sbjct: 249 IFEPSIMEGLCDVTIDE-FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPK 305
Query: 453 STSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSY 512
L + L P DL L+ L L+ N S F +V +P LSY
Sbjct: 306 HFKWQSLSIIRCQLK-QFPT--LDLPFLKSLTLTMNKGSIS--------FKKVALPSLSY 354
Query: 513 SHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTS 572
DLS N LS S + L+LS N ++ +
Sbjct: 355 ------LDLSRNALSFSGC-------------CSYSDLGTNSLRHLDLSFNGAIIM-SAN 394
Query: 573 FGNLNGLTNLDLSYNEFDGNNKF 595
F L L +LD ++ +F
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEF 417
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 3e-40
Identities = 62/381 (16%), Positives = 113/381 (29%), Gaps = 28/381 (7%)
Query: 121 VSPLLFDLSKLRVLNLSQNLLFGQ-PSPQVSNLKRLKMLSL------GENQLSGSLPSQL 173
+ F KL L L N + NL L + L E L PS +
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255
Query: 174 GVLTWL--ETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLD 231
L + + L + + + + + ++ +G + + + Q L
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLS 313
Query: 232 LSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQ 291
+ L +L L L ++ N S I + L LS L N + S
Sbjct: 314 IIRCQLKQFP----TLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGC 367
Query: 292 SELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV 351
+ L+ S N + + +++ + ++
Sbjct: 368 CSYSDLGTNS-----LRHLDLS--FNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA 419
Query: 352 -GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEK 410
+ L Y+ +S SL + + GN N + L
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV--FANTTNLTF 477
Query: 411 LDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSI 470
LDLS L L +Q+L ++ N SL+ L+ N + S
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537
Query: 471 PEKIADLAQLQFLDLSYNNLS 491
L F +L+ N+++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-25
Identities = 49/263 (18%), Positives = 86/263 (32%), Gaps = 32/263 (12%)
Query: 335 SVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGT 394
+ + + + ++P ++ S K I LS N L ++ L ++L +
Sbjct: 15 TYQCMDQK-LSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71
Query: 395 IEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDST 454
+ + L L L L+ N + P L S++ L +G
Sbjct: 72 EDKAWH---GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128
Query: 455 SLNILELGNNNLNG-SIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYS 513
+L L + +N ++ +P ++L L +DLSYN + I +
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLR-------ENP 180
Query: 514 HNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSV-LVPTS 572
D+S N + +I +L L GN S ++ T
Sbjct: 181 QVNLSLDMSLNPID----------------FIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224
Query: 573 FGNLNGLTNLDLSYNEFDGNNKF 595
NL GL L EF
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNL 247
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 4e-23
Identities = 46/229 (20%), Positives = 73/229 (31%), Gaps = 13/229 (5%)
Query: 118 KGPVSPLLFDLSKLRVLNLSQNLL--FGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV 175
KG +S L L L+LS+N L G S L+ L L N + +
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG 397
Query: 176 LTWLETLSLCSNSFTGEMP-SELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSD 234
L L+ L ++ S +++L LD S LT L L ++
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457
Query: 235 NLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSEL 294
N + ++F N +L++LD+S L L +L + N S
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517
Query: 295 GNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQF 343
+ L S N++ + L NN
Sbjct: 518 NQLYS-------LSTLDCSF--NRIETSKGILQHFPKSLAFFNLTNNSV 557
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 1e-46
Identities = 100/475 (21%), Positives = 178/475 (37%), Gaps = 67/475 (14%)
Query: 128 LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187
L++ L + + S ++L ++ L + + L L ++ +N
Sbjct: 23 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 78
Query: 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFT 247
T + L ++ +L + + N P L LT L L L +N ++ +
Sbjct: 79 QLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD---IDPLK 131
Query: 248 NLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAEL 307
NL +L+ L++S+N +S +S L L G NQ T L N L L
Sbjct: 132 NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLK--PLANLTT----LERL 182
Query: 308 QIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKL 367
I N++S L K +ES+ NNQ PL G + L + L+ N+L
Sbjct: 183 DI-----SSNKVSDISV--LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQL 233
Query: 368 SGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIG 427
L +L +++L N +S + L++L +L L +N ++ P +
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTELKLGANQISNISP--LA 284
Query: 428 NLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSY 487
L ++ L+LN N P + + +L L L NN++ P ++ L +LQ L
Sbjct: 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340
Query: 488 NNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIP-KELGSCVVV------ 540
N +S ++ L+ N +N +S P L +
Sbjct: 341 NKVS--------------DVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386
Query: 541 LTGYIPRSLGHLSCSVKLNLSGNKLSVLV-PTSFGNLNGLTNLDLSYNEFDGNNK 594
T ++S N N L+ P + + T D+++N N+
Sbjct: 387 WTNAPVNYKANVS---IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNE 438
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 1e-40
Identities = 97/423 (22%), Positives = 156/423 (36%), Gaps = 63/423 (14%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184
L +L+KL + ++ N + ++NL L L+L NQ++ P L LT L L L
Sbjct: 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 141
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVS 244
SN+ + S L + L+ L F T L LT L+ LD+S N +S +S
Sbjct: 142 SSNTISD--ISALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNKVSD---IS 193
Query: 245 LFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSV- 303
+ L +L L +NN +S P + L L + L NQ L + N +
Sbjct: 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD 249
Query: 304 --------------LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPL 349
L +L A NQ+S P L + ++ LN NQ P+
Sbjct: 250 LANNQISNLAPLSGLTKLTELKLGA--NQISNISP--LAGLTALTNLELNENQLEDISPI 305
Query: 350 EVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLE 409
N L Y+ L N +S P ++ L + N +S NL+ +
Sbjct: 306 --SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS-----LANLTNIN 356
Query: 410 KLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGS 469
L N ++ P + NL I L LN + + + + N ++ L
Sbjct: 357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--I 412
Query: 470 IPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYR-KFDLSYNMLSG 528
P I+D D+++N S ++SY+ + SG
Sbjct: 413 APATISDGGSYTEPDITWNLPS--------------YTNEVSYTFSQPVTIGKGTTTFSG 458
Query: 529 PIP 531
+
Sbjct: 459 TVT 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 3e-34
Identities = 79/410 (19%), Positives = 141/410 (34%), Gaps = 77/410 (18%)
Query: 195 SELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSY 254
+ + TV +L ++ L + ++ L +L+
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQ 72
Query: 255 LDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSV----------- 303
++ SNN L+ + +L KL D + NQ + L N N +
Sbjct: 73 INFSNNQLTD--ITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDID 128
Query: 304 ----LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKY 359
L L S+ N +S L ++ + N + N + L+
Sbjct: 129 PLKNLTNLNRLELSS--NTISDISA--LSGLTSLQQLSFGNQV---TDLKPLANLTTLER 181
Query: 360 IRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLT 419
+ +S+NK+S L +L + N +S L+ L++L L+ N L
Sbjct: 182 LDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPL-----GILTNLDELSLNGNQLK 234
Query: 420 GRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQ 479
+ +L ++ L L +N + P L T L L+LG N ++ P +A L
Sbjct: 235 D--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 288
Query: 480 LQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVV 539
L L+L+ N L +I +S N L +N +S P
Sbjct: 289 LTNLELNENQLE--------------DISPISNLKNLTYLTLYFNNISDISP-------- 326
Query: 540 VLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEF 589
+ L+ +L NK+S + +S NL + L +N+
Sbjct: 327 ---------VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 365
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 1e-44
Identities = 92/482 (19%), Positives = 167/482 (34%), Gaps = 49/482 (10%)
Query: 121 VSPLLFD-LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQL-SGSLPSQLGVLTW 178
++ F LS L+ L + L + + +LK LK L++ N + S LP LT
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 179 LETLSLCSNSFTGEMPSELGDMKQLK----SLDFSGNGFNGTVPIRLGELTRLQDLDLSD 234
LE L L SN ++L + Q+ SLD S N N + + RL L L +
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRN 209
Query: 235 NLLSGSLTVSLFTNLQSLSYLDVSNNLLSGN---IPPEISHLKKLSDHYLGINQFTGSIQ 291
N S ++ + L L + + S L+ L + + + +
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA-YLD 268
Query: 292 SELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV 351
L + + + L + F+ + + + + L N +F
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVS--VTIERVKD--FSYNFGWQHLELVNCKFGQ---FPT 321
Query: 352 GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKL 411
LK + ++NK + E++ SL ++L N LS + L+ L
Sbjct: 322 LKLKSLKRLTFTSNKGG-NAFSEVDLP-SLEFLDLSRNGLS-FKGCCSQSDFGTTSLKYL 378
Query: 412 DLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSI 470
DLS N + + L ++ L + + S +L L++ + + +
Sbjct: 379 DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 471 PEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPI 530
L+ L+ L ++ N+ L + + DLS L +
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-----------TFLDLSQCQLEQ-L 485
Query: 531 PKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590
P + LS LN++ N+L + F L L + L N +D
Sbjct: 486 S--------------PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Query: 591 GN 592
+
Sbjct: 532 CS 533
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 2e-43
Identities = 101/472 (21%), Positives = 166/472 (35%), Gaps = 52/472 (11%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186
LS L L L+ N + S L L+ L E L+ +G L L+ L++
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 187 NSFT-GEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQ----DLDLSDNLLSGSL 241
N ++P ++ L+ LD S N L L ++ LDLS N ++ +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FI 192
Query: 242 TVSLFTNLQSLSYLDVSNNLLSGNIPPE-ISHLKKLSDHYLGINQFTGSIQSELGNCKNF 300
F + L L + NN S N+ I L L H L + +F E +
Sbjct: 193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251
Query: 301 KSVLAELQIFTFS-AGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKY 359
+ L L I F A ++ + + S L + I R+ N ++
Sbjct: 252 EG-LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFG-WQH 308
Query: 360 IRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLT 419
+ L N K +L SL + N +V +L LE LDLS N L+
Sbjct: 309 LELVNCKFGQFPTLKLK---SLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGLS 360
Query: 420 --GRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIA-- 475
G + S++ L L+ N ++ L L+ ++NL + E
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFL 418
Query: 476 DLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELG 535
L L +LD+S+ + + + ++ N
Sbjct: 419 SLRNLIYLDISHTHT------------RVAFNGIFNGLSSLEVLKMAGNSFQENFL---- 462
Query: 536 SCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
P L L+LS +L L PT+F +L+ L L+++ N
Sbjct: 463 ----------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 1e-37
Identities = 93/494 (18%), Positives = 160/494 (32%), Gaps = 76/494 (15%)
Query: 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188
+ L+LS N L S + L++L L ++ L+ L TL L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTN 248
+ L+ L +G L L++L+++ NL+ F+N
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 249 LQSLSYLDVSNNLLSGNIPPEISHLKKLSDH----YLGINQFTGSIQSE----------- 293
L +L +LD+S+N + ++ L ++ L +N IQ
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLT 206
Query: 294 LGNCKNFKSV-------LAELQIFTFSAG----MNQLSGPLPSWLGKWNQMESVWLNNNQ 342
L N + +V LA L++ G L S L +
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 343 ---FIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVF 399
++ I + + L + + + + + L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQF----- 319
Query: 400 GRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFN--GSIPMRLGDSTSLN 457
L L++L +SN + +L S++ L L+ N + G +TSL
Sbjct: 320 -PTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 458 ILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYR 517
L+L N + ++ L QL+ LD ++NL + + S + R
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK--------------QMSEFSVFLSLR 421
Query: 518 K---FDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKL-SVLVPTSF 573
D+S+ V I L L L ++GN +P F
Sbjct: 422 NLIYLDISHTHTR------------VAFNGIFNGLSSLE---VLKMAGNSFQENFLPDIF 466
Query: 574 GNLNGLTNLDLSYN 587
L LT LDLS
Sbjct: 467 TELRNLTFLDLSQC 480
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 6e-23
Identities = 69/392 (17%), Positives = 113/392 (28%), Gaps = 36/392 (9%)
Query: 94 ANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQV-SNL 152
L+ L ++ L + L + + P F +L L L N L
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224
Query: 153 KRLKMLSL------GENQLSGSLPSQLGVLTWLETLSLCSNS---FTGEMPSELGDMKQL 203
L++ L E L S L L L + ++ + +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284
Query: 204 KSLDFSGNGFNGTVPI-RLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL 262
S L+ ++ L+SL L ++N
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP-------TLKLKSLKRLTFTSNKG 337
Query: 263 SGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGP 322
L L L N + G C L+ S N +
Sbjct: 338 GN--AFSEVDLPSLEFLDLSRNGLS-----FKGCCSQSDFGTTSLKYLDLSF--NGVIT- 387
Query: 323 LPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDSESL 381
+ S Q+E + ++ V + L Y+ +S+ + N SL
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 382 VEINLDGNMLSGTI-EDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNS 439
+ + GN D+F L L LDLS L ++ +L S+Q+L + S
Sbjct: 448 EVLKMAGNSFQENFLPDIFT---ELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMAS 503
Query: 440 NFFNGSIPMRLGDSTSLNILELGNNNLNGSIP 471
N TSL + L N + S P
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 2e-20
Identities = 58/353 (16%), Positives = 107/353 (30%), Gaps = 40/353 (11%)
Query: 258 SNNLLSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGM 316
N IP + K L L N + L L +
Sbjct: 16 ELNFYK--IPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPE----LQVLDL-----SR 61
Query: 317 NQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELN 376
++ + + ++ L N S L+ + L+ +
Sbjct: 62 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121
Query: 377 DSESLVEINLDGNML-SGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQI- 434
++L E+N+ N++ S + + F NL+ LE LDLSSN + ++ L + +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFS---NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 435 ---LKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEK-IADLAQLQFLDLSYNNL 490
L L+ N N I L+ L L NN + ++ + I LA L+ L
Sbjct: 179 NLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 491 SRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGY------ 544
+ + +L+ L+Y +L +C+ ++ +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEF----RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293
Query: 545 --IPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGNNKF 595
+ + L L K L L L + N+
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQF---PTLKLKSLKRLTFTSNKGGNAFSE 343
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 3e-20
Identities = 60/311 (19%), Positives = 108/311 (34%), Gaps = 48/311 (15%)
Query: 93 IANALKDLEELLLRVVYQVLRTQSLKG-PVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSN 151
+ + DL L V L + +++ F L ++N
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLK 323
Query: 152 LKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFT--GEMPSELGDMKQLKSLDFS 209
LK LK L+ N+ + S++ L LE L L N + G LK LD S
Sbjct: 324 LKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPE 269
NG T+ L +L+ LD + L S+F +L++L YLD+S+
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 270 ISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGK 329
+ L L + N F + ++ +
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDI--------------------------------FTE 468
Query: 330 WNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRE-LNDSESLVEINLD 387
+ + L+ Q + ++ + S L+ + +++N+L S+P + SL +I L
Sbjct: 469 LRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLH 526
Query: 388 GNMLSGTIEDV 398
N + +
Sbjct: 527 TNPWDCSCPRI 537
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 2e-19
Identities = 49/232 (21%), Positives = 76/232 (32%), Gaps = 31/232 (13%)
Query: 362 LSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGR 421
IP L S ++L N L F L+ LDLS +
Sbjct: 14 CMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPE---LQVLDLSRCEIQTI 67
Query: 422 IPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQ 481
+L + L L N +SL L NL I L L+
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 482 FLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVL 541
L++++N + L ++ S N+ +L DLS N + +L
Sbjct: 128 ELNVAHNLIQSFKLPEYFS-----NLTNL------EHLDLSSNKIQSIYCTDL------- 169
Query: 542 TGYIPRSLGHLSCS-VKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592
R L + + L+LS N ++ + P +F + L L L N N
Sbjct: 170 -----RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLN 215
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 3e-43
Identities = 80/511 (15%), Positives = 165/511 (32%), Gaps = 73/511 (14%)
Query: 128 LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187
+ ++ L+LS N + + L++L L ++++ L LE L L N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 188 SFTGEMPSELGDMKQLKSLDFSGNGFNG-TVPIRLGELTRLQDLDLSDNLLSGSLTVSLF 246
+ S G + LK L+ GN + V LT LQ L + + + F
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 247 TNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSV-LA 305
L SL+ L++ L + ++ + L +++ ++ + + + L
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204
Query: 306 ELQIFTFSAGMNQLSGPLPSWLGKWNQMESV----------------------------- 336
+ + F + + +
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264
Query: 337 ---WLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSG 393
N ++ L ++ + + L + + E + I ++ + +
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324
Query: 394 TIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKE---IGNLRSIQILKLNSNFFN--GSIPM 448
+L LE LDLS N++ K G S+Q L L+ N
Sbjct: 325 VPCSFS---QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381
Query: 449 RLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIP 508
L +L L++ N + +P+ +++FL+LS + + + +
Sbjct: 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR----VVKTCIPQTLEVL 436
Query: 509 DLSYSH---------NYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLN 559
D+S ++ ++ +S N L +P + L +
Sbjct: 437 DVSNNNLDSFSLFLPRLQELYISRNKLKT-LPDAS----------LFPVLLVM------K 479
Query: 560 LSGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590
+S N+L + F L L + L N +D
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 1e-31
Identities = 86/448 (19%), Positives = 147/448 (32%), Gaps = 51/448 (11%)
Query: 158 LSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTV 217
+ S+PS L +++L L N T +L L+ L + N
Sbjct: 10 CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66
Query: 218 PIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG-NIPPEISHLKKL 276
L L+ LDLSDN LS SL+ S F L SL YL++ N + +L L
Sbjct: 67 GDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125
Query: 277 SDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESV 336
+G + I+ +F L L A L L + +
Sbjct: 126 QTLRIGNVETFSEIRRI-----DFAG-LTSLNELEIKA--LSLRNYQSQSLKSIRDIHHL 177
Query: 337 WLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIE 396
L+ ++ + + S ++Y+ L + L+ L E + S +
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237
Query: 397 DVFGRCT-------NLSQLEKLDLSSNMLTGRIPKEIGNLR--------SIQILKLNSNF 441
+ F LS++E D + N L P E + +I+ L + +
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297
Query: 442 FNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSY 501
+ + + + N+ + L L+FLDLS N + L +
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC- 356
Query: 502 FHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLS 561
+ + LS N L + K +L +L+ L++S
Sbjct: 357 --------KGAWPSLQTLVLSQNHLRS-MQKTGEIL---------LTLKNLTS---LDIS 395
Query: 562 GNKLSVLVPTSFGNLNGLTNLDLSYNEF 589
N + P S + L+LS
Sbjct: 396 RNTFHPM-PDSCQWPEKMRFLNLSSTGI 422
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 2e-21
Identities = 58/364 (15%), Positives = 113/364 (31%), Gaps = 56/364 (15%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186
+ + L L + L ++ L L + L+ S L V + +
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229
Query: 187 NSFT-------GEMPSELGDMKQLKSLDFSGNGFNGTVPIRLG-----------ELTRLQ 228
+ E+ L + +L ++F NG E ++
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289
Query: 229 DLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFT 287
L + L L+ ++++ L+ + + V N+ + +P HLK L L N
Sbjct: 290 RLHIPQFYLFYDLS-TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV 347
Query: 288 GSIQSELGNCKNFKSVLAELQIFTFSAGMNQLS--GPLPSWLGKWNQMESVWLNNNQFIG 345
K LQ S N L L + S+ ++ N
Sbjct: 348 EEYLKNSA----CKGAWPSLQTLVLS--QNHLRSMQKTGEILLTLKNLTSLDISRNT-FH 400
Query: 346 RIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDS------------------ESLVEINLD 387
+P ++++ LS+ + + + + L E+ +
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYIS 459
Query: 388 GNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSI 446
N L + L + +S N L +P I L S+Q + L++N ++ S
Sbjct: 460 RNKLKTLPDASL-----FPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 513
Query: 447 PMRL 450
P
Sbjct: 514 PRID 517
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 3e-17
Identities = 40/243 (16%), Positives = 79/243 (32%), Gaps = 35/243 (14%)
Query: 353 NCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLD 412
+C + + SIP L + ++ ++L N ++ + L+ L
Sbjct: 3 SCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDL---RACANLQVLI 56
Query: 413 LSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNG-SI 470
L S+ + I + +L S++ L L+ N + G +SL L L N +
Sbjct: 57 LKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115
Query: 471 PEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPI 530
+L LQ L + F E+ D + + + ++
Sbjct: 116 TSLFPNLTNLQTLRIGNVET-----------FSEIRRIDFAGLTSLNELEIKAL------ 158
Query: 531 PKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590
L Y +SL + L L ++ + L+ L+ + L+L
Sbjct: 159 ---------SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209
Query: 591 GNN 593
Sbjct: 210 RFQ 212
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 1e-42
Identities = 98/495 (19%), Positives = 164/495 (33%), Gaps = 54/495 (10%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQ-LGVLTWLETLSLC 185
L+ L LS N + + L++L++L LG ++ + L L L L
Sbjct: 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81
Query: 186 SNSFTGEMPSELGDMKQLKSLDFSGNGFNGTV--PIRLGELTRLQDLDLSDNLLSGSLTV 243
S+ P + L L G + V L L LDLS N +
Sbjct: 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141
Query: 244 SLFTNLQSLSYLDVSNNLLSGNIPPEISHL--KKLSDHYLGINQFTGSIQSELGNCKNFK 301
F L SL +D S+N + E+ L K LS L N + + G C N
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201
Query: 302 SVLAELQIFTFS----------AGMNQLSGPLPSWLGKWNQMESVWLNNNQF--IGRIPL 349
+ L+I S N +S L + + + +
Sbjct: 202 RNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260
Query: 350 EVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLE 409
S ++++ LS+ + R + L +NL N ++ ++ F L L+
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF---YGLDNLQ 317
Query: 410 KLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGS 469
L+LS N+L L + + L N L L+L +N L
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-- 375
Query: 470 IPEKIADLAQLQFLDLSYNNLS---RPILSKHSSYFHEVNIPDLSYSH------NYRKFD 520
I + + + LS N L + L+ + + E + +L + + +
Sbjct: 376 ---TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432
Query: 521 LSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTS-----FGN 575
L+ N S + S L +L L N L + T F
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLE--------------QLFLGENMLQLAWETELCWDVFEG 478
Query: 576 LNGLTNLDLSYNEFD 590
L+ L L L++N +
Sbjct: 479 LSHLQVLYLNHNYLN 493
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 2e-39
Identities = 100/499 (20%), Positives = 180/499 (36%), Gaps = 64/499 (12%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQV-SNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLC 185
L +L++L L + NL L++L LG +++ P L L L L
Sbjct: 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105
Query: 186 SNSFTGEM--PSELGDMKQLKSLDFSGNGFNGTVPIR--LGELTRLQDLDLSDNLLSGSL 241
+ + ++K L LD S N ++ + G+L L+ +D S N + +
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIR-SLYLHPSFGKLNSLKSIDFSSNQIF-LV 163
Query: 242 TVSLFTNLQ--SLSYLDVSNNLLSGNIPPEISH-LKKLSDHYLGINQFTGSIQSELGNCK 298
LQ +LS+ ++ N L + + + + L I +G+ +
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD-ITG 222
Query: 299 NFKSVLAELQIFTFSAGM---------NQLSGPLPSWLG--KWNQMESVWLNNNQFIGRI 347
NF + +++ Q F+ + + P + + + + L++ + +
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSL 281
Query: 348 PLEV-GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLS 406
V LK + L+ NK++ ++L +NL N+L F L
Sbjct: 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF---YGLP 338
Query: 407 QLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSN--------------FFNGSIPMRL-G 451
++ +DL N + + L +Q L L N F +G+ + L
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK 398
Query: 452 DSTSLNILELGNNNLNG-SIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDL 510
+ + N++ L N L I + + LQ L L+ N S S +
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS--CSGDQT---------P 447
Query: 511 SYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVP 570
S + + + L NML EL + L HL L L+ N L+ L P
Sbjct: 448 SENPSLEQLFLGENMLQLAWETEL-------CWDVFEGLSHLQ---VLYLNHNYLNSLPP 497
Query: 571 TSFGNLNGLTNLDLSYNEF 589
F +L L L L+ N
Sbjct: 498 GVFSHLTALRGLSLNSNRL 516
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 5e-30
Identities = 87/523 (16%), Positives = 158/523 (30%), Gaps = 80/523 (15%)
Query: 97 LKDLEELLLR-VVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSN-LKR 154
L L+ + ++ L+ L +L+ N L+ + S +
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEP------LQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200
Query: 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFN 214
+ + L +SG+ + ++ SN+ + L + F +
Sbjct: 201 FRNMVLEILDVSGNGWT-------VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253
Query: 215 GTVPIRLGELTR--LQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISH 272
L R ++ LDLS + SL +F L+ L L+++ N ++
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312
Query: 273 LKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQ 332
L L L N S + N ++ +
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPK-------VAYIDLQK--NHIAIIQDQTFKFLEK 363
Query: 333 MESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLS 392
++++ L +N + + I LS NKL ++P+ + + +L N L
Sbjct: 364 LQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKINLTANLI---HLSENRLE 414
Query: 393 GTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLG 451
D+ + L+ L L+ N + + S++ L L N + L
Sbjct: 415 NL--DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472
Query: 452 DS-----TSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVN 506
+ L +L L +N LN P + L L+ L L+ N L+
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--------------V 518
Query: 507 IPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGY---------------------- 544
+ N D+S N L P P S V+ +
Sbjct: 519 LSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVT 578
Query: 545 IPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
I + C + SG L L L +L S
Sbjct: 579 IAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLF 621
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 8e-23
Identities = 63/372 (16%), Positives = 123/372 (33%), Gaps = 64/372 (17%)
Query: 230 LDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFTG 288
L+ + L + L +S N + + L++L LG
Sbjct: 9 AFYRFCNLT-----QVPQVLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPL 62
Query: 289 SIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIP 348
+I E F++ L L+I + +++ P + + L +
Sbjct: 63 TIDKEA-----FRN-LPNLRILDLGS--SKIYFLHPDAFQGLFHLFELRLYFCG-LSDAV 113
Query: 349 LEVG---NCSMLKYIRLSNNKLSG-SIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTN 404
L+ G N L + LS N++ + SL I+ N + E
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173
Query: 405 LSQLEKLDLSSNMLTGRIPKEIGNL------RSIQILKLNSNFFNGSIPMRLGDSTSLNI 458
+ L L++N L R+ + G ++IL ++ N + +++I
Sbjct: 174 KT-LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW------------TVDI 220
Query: 459 LELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRK 518
+N ++ S + + ++N+ P + F + + R
Sbjct: 221 TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP----DQNTFAGLARSSV------RH 270
Query: 519 FDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNG 578
DLS+ + + R L LNL+ NK++ + +F L+
Sbjct: 271 LDLSHGFVFS-LN--------------SRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 579 LTNLDLSYNEFD 590
L L+LSYN
Sbjct: 316 LQVLNLSYNLLG 327
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 5e-42
Identities = 78/434 (17%), Positives = 153/434 (35%), Gaps = 91/434 (20%)
Query: 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFN 214
L+ ++ P L L S T +++ + L +G
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57
Query: 215 GTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLK 274
I LT L+ L+L+ N ++ +S +NL L+ L + N ++ + +L
Sbjct: 58 SIQGI--EYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKIT--DISALQNLT 110
Query: 275 KLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQME 334
L + YL + + S L N M
Sbjct: 111 NLRELYLNEDNISDI--SPLANLTK---------------------------------MY 135
Query: 335 SVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGT 394
S+ L N + + + N + L Y+ ++ +K+ P + + L ++L+ N +
Sbjct: 136 SLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED- 191
Query: 395 IEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDST 454
I + +L+ L N +T P + N+ + LK+ +N P L + +
Sbjct: 192 ISPL----ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLS 243
Query: 455 SLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSH 514
L LE+G N ++ + DL +L+ L++ N +S +I L+
Sbjct: 244 QLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS--------------DISVLNNLS 287
Query: 515 NYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFG 574
L+ N L + +G L +L+ L LS N ++ + P
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGG------------LTNLT---TLFLSQNHITDIRP--LA 330
Query: 575 NLNGLTNLDLSYNE 588
+L+ + + D +
Sbjct: 331 SLSKMDSADFANQV 344
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 2e-40
Identities = 82/374 (21%), Positives = 150/374 (40%), Gaps = 40/374 (10%)
Query: 95 NALKDLEEL--LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNL 152
+ + L + VL+ S+ V+ +L + L ++ + + L
Sbjct: 10 APINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYL 65
Query: 153 KRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNG 212
L+ L+L NQ++ P L L L L + +N T S L ++ L+ L + +
Sbjct: 66 TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDN 121
Query: 213 FNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISH 272
+ L LT++ L+L N L+ +N+ L+YL V+ + + I++
Sbjct: 122 I--SDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD--VTPIAN 175
Query: 273 LKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQ 332
L L L NQ S L + + L +NQ++ P + +
Sbjct: 176 LTDLYSLSLNYNQIEDI--SPLASLTS----LHYFTA-----YVNQITDITP--VANMTR 222
Query: 333 MESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLS 392
+ S+ + NN+ PL N S L ++ + N++S + D L +N+ N +S
Sbjct: 223 LNSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQIS 278
Query: 393 GTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGD 452
I + NLSQL L L++N L + IG L ++ L L+ N P L
Sbjct: 279 D-ISVL----NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331
Query: 453 STSLNILELGNNNL 466
+ ++ + N +
Sbjct: 332 LSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 3e-17
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184
+ ++++L L + N + ++NL +L L +G NQ+S + + LT L+ L++
Sbjct: 217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNV 272
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVS 244
SN + S L ++ QL SL + N +G LT L L LS N ++ +
Sbjct: 273 GSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD---IR 327
Query: 245 LFTNLQSLSYLDVSNNLLS 263
+L + D +N ++
Sbjct: 328 PLASLSKMDSADFANQVIK 346
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 6e-36
Identities = 50/465 (10%), Positives = 137/465 (29%), Gaps = 98/465 (21%)
Query: 124 LLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183
+ + ++ ++ ++ + L + + +K L L N LS + L T LE L+
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTV 243
L SN +L + L++LD + N L ++ L ++N +S ++
Sbjct: 65 LSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC 116
Query: 244 SLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSV 303
S ++ + ++NN ++ + ++ L +N+
Sbjct: 117 SRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT--------------- 158
Query: 304 LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLS 363
+N + + L+++ L
Sbjct: 159 ----------------------------------VNFAELAA-------SSDTLEHLNLQ 177
Query: 364 NNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIP 423
N + + ++ + L ++L N L+ + F + + + + L +N L I
Sbjct: 178 YNFIY-DVKGQVVFA-KLKTLDLSSNKLA-FMGPEFQ---SAAGVTWISLRNNKLV-LIE 230
Query: 424 KEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFL 483
K + ++++ L N F+ S + + + + + +
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289
Query: 484 DLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTG 543
++ P ++ + + G +
Sbjct: 290 HYGAYCCE------------DLPAPFADRLIALKRKEHALLSGQGSETER---------- 327
Query: 544 YIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNE 588
+ + + +++ + ++ L+
Sbjct: 328 -LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 2e-32
Identities = 59/400 (14%), Positives = 128/400 (32%), Gaps = 29/400 (7%)
Query: 96 ALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRL 155
A+ ++++ R + + SLK ++ L ++ L+LS N L + ++ +L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 156 KMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNG 215
++L+L N L L L+ L TL L +N EL +++L + N +
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113
Query: 216 TVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG-NIPPEISHLK 274
+ +++ L++N ++ L + YLD+ N + N +
Sbjct: 114 ---VSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169
Query: 275 KLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQME 334
L L N ++ ++ + L L + N+L+ + +
Sbjct: 170 TLEHLNLQYNFIY-DVKGQV-----VFAKLKTLDL-----SSNKLAF-MGPEFQSAAGVT 217
Query: 335 SVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGT 394
+ L NN+ + I + L++ L N R+ V+ + +
Sbjct: 218 WISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ-TVAKQTVKKL 275
Query: 395 IEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRS--IQILKLNSNFFNGSIPMRLGD 452
CT + L + L+ +L + + +
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECEREN 334
Query: 453 STSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSR 492
++ I + L+ L
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDE 374
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 3e-35
Identities = 100/482 (20%), Positives = 158/482 (32%), Gaps = 100/482 (20%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNL-------------KRLKMLSLGENQLSGSLPS 171
++ + + P ++ L L LS SLP
Sbjct: 30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE 88
Query: 172 QLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLD 231
LE+L NS T E+P +K L + + + P L+ L
Sbjct: 89 LPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLG 137
Query: 232 LSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQ 291
+S+N L + N L +DV NN L +P L+ + G NQ
Sbjct: 138 VSNNQLE---KLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE--EL 188
Query: 292 SELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV 351
EL N L N L LP +ES+ NN E+
Sbjct: 189 PELQNLPF-------LTAIYADN--NSLKK-LPDLPL---SLESIVAGNNIL--EELPEL 233
Query: 352 GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKL 411
N L I NN L ++P SL +N+ N L+ E L L
Sbjct: 234 QNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLTDLPEL-------PQSLTFL 282
Query: 412 DLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIP 471
D+S N+ + + + NL L +SN S+ SL L + NN L +P
Sbjct: 283 DVSENIFS-GLSELPPNLYY---LNASSNEIR-SLCDLP---PSLEELNVSNNKLI-ELP 333
Query: 472 EKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIP 531
+L+ L S+N+L+ +P+L N ++ + YN L P
Sbjct: 334 A---LPPRLERLIASFNHLAE--------------VPELP--QNLKQLHVEYNPLRE-FP 373
Query: 532 KELGSCVVVLTG----YIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
S + +P +L +L++ N L P ++ +L ++
Sbjct: 374 DIPESVEDLRMNSHLAEVPELPQNLK---QLHVETNPLREF-PDIPESV---EDLRMNSE 426
Query: 588 EF 589
Sbjct: 427 RV 428
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 7e-34
Identities = 82/459 (17%), Positives = 144/459 (31%), Gaps = 108/459 (23%)
Query: 146 SPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKS 205
+P+ + L+ + L+ +P + + + + P G+ +++
Sbjct: 4 NPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 206 LDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGN 265
+ +L+L++ LS SL L L S N L+
Sbjct: 63 SRLRDC-----------LDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-E 105
Query: 266 IPPEISHLKKLSDHYLGINQFTGSIQS---------------ELGNCKNFKSVLAELQIF 310
+P LK L + + EL N L+I
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSF-------LKII 158
Query: 311 TFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGS 370
N L LP +E + NNQ + +P E+ N L I NN L
Sbjct: 159 DVD--NNSLKK-LPDLPP---SLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLK-K 209
Query: 371 IPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLR 430
+P SL I N+L + ++ NL L + +N+L +P +L
Sbjct: 210 LPDLPL---SLESIVAGNNILE-ELPEL----QNLPFLTTIYADNNLLK-TLPDLPPSLE 260
Query: 431 SIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNL 490
++ + +P T L++ E + L+ P L +L+ S N +
Sbjct: 261 ALNVRDNYLT----DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEI 309
Query: 491 SRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLG 550
++ DL + + ++S N L +P
Sbjct: 310 R--------------SLCDL--PPSLEELNVSNNKLI----------------ELPALPP 337
Query: 551 HLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEF 589
L +L S N L+ + P N L L + YN
Sbjct: 338 RLE---RLIASFNHLAEV-PELPQN---LKQLHVEYNPL 369
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 7e-34
Identities = 79/463 (17%), Positives = 146/463 (31%), Gaps = 85/463 (18%)
Query: 128 LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187
+ L L+ L P L+ L N L+ LP L L +
Sbjct: 70 DRQAHELELNNLGLSSLPE----LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124
Query: 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFT 247
+ + P L+ L S N +P L + L+ +D+ +N L L
Sbjct: 125 ALSDLPPL-------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-----KLPD 170
Query: 248 NLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAEL 307
SL ++ NN L PE+ +L L+ Y N + + +
Sbjct: 171 LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KLPDLPLSLE--------- 218
Query: 308 QIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKL 367
+ AG N L LP L + +++ +NN + +P + L+ + + +N L
Sbjct: 219 ---SIVAGNNILEE-LPE-LQNLPFLTTIYADNNL-LKTLPDLPPS---LEALNVRDNYL 269
Query: 368 SGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIG 427
+ +P L + LS L L+ SSN + +
Sbjct: 270 T-DLPELPQSLTFLDVSENIFSGLSELPP----------NLYYLNASSNEIR-SLCDLPP 317
Query: 428 NLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSY 487
+L L +++N +P L L N+L +PE L+ L + Y
Sbjct: 318 SLEE---LNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQ---NLKQLHVEY 366
Query: 488 NNLSR--PILSKHSSYFHEVNIPDLSYS-HNYRKFDLSYNMLSGPIPKELGSCVVVLTGY 544
N L I ++ ++ N ++ + N L
Sbjct: 367 NPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR----------------E 410
Query: 545 IPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
P + L ++ ++ + + L + ++
Sbjct: 411 FPDIPESVE---DLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 6e-31
Identities = 71/388 (18%), Positives = 138/388 (35%), Gaps = 61/388 (15%)
Query: 123 PLLFDLSKLRVLNLSQNLLFGQPS---------------PQVSNLKRLKMLSLGENQLSG 167
L L L V N + L P P++ N LK++ + N L
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK- 166
Query: 168 SLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRL 227
LP L ++ +N EL ++ L ++ N +P L
Sbjct: 167 KLPDLPPSLE---FIAAGNNQLEE--LPELQNLPFLTAIYADNNSLK-KLP---DLPLSL 217
Query: 228 QDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFT 287
+ + +N+L + NL L+ + NNLL +P L+ L+ +
Sbjct: 218 ESIVAGNNILE---ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLP 273
Query: 288 GSIQS--ELGNCKNFKSVLAEL--QIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQF 343
QS L +N S L+EL ++ +A N++ S +E + ++NN+
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKL 329
Query: 344 IGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCT 403
I +P L+ + S N L+ +P ++L +++++ N L D+
Sbjct: 330 I-ELPALPPR---LERLIASFNHLA-EVPELP---QNLKQLHVEYNPLR-EFPDIPESVE 380
Query: 404 NLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGN 463
+L ++ L +P+ NL+ L + +N P S+ L + +
Sbjct: 381 DLRM-------NSHLA-EVPELPQNLKQ---LHVETNPLR-EFPDIPE---SVEDLRMNS 425
Query: 464 NNLNGSIPEKIADLAQLQFLDLSYNNLS 491
+ +L+ +++
Sbjct: 426 ERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 2e-20
Identities = 68/340 (20%), Positives = 115/340 (33%), Gaps = 51/340 (15%)
Query: 266 IPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFK------SVLAELQIFTFSAGMNQL 319
I P L + + T + E N K+ S
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 320 SGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSE 379
L L + Q + LNN + +P + L+ + S N L+ +P +
Sbjct: 62 VSRLRDCLDR--QAHELELNNLG-LSSLPELPPH---LESLVASCNSLT-ELPELPQSLK 114
Query: 380 SLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNS 439
SL+ N + LS LE L +S+N L ++P E+ N ++I+ +++
Sbjct: 115 SLLVDNNNLKALSD----------LPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDN 162
Query: 440 NFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSR--PILSK 497
N +P SL + GNN L +PE + +L L + N+L + +
Sbjct: 163 NSLK-KLPDLPP---SLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLKKLPDLPLS 216
Query: 498 ----HSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGY-----IPRS 548
+ +P+L N+L +P S + +P
Sbjct: 217 LESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPEL 275
Query: 549 LGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNE 588
L+ L++S N S L N L L+ S NE
Sbjct: 276 PQSLT---FLDVSENIFSGL-SELPPN---LYYLNASSNE 308
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 9e-35
Identities = 57/362 (15%), Positives = 120/362 (33%), Gaps = 54/362 (14%)
Query: 124 LLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183
+ + ++ ++ ++ + L + + +K L L N LS + L T LE L+
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64
Query: 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTV 243
L SN +L + L++LD + N L ++ L ++N +S ++
Sbjct: 65 LSSNVLY--ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC 116
Query: 244 SLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSV 303
S ++ + ++NN ++ + ++ L +N+
Sbjct: 117 SRGQGKKN---IYLANNKITMLRDLDEGCRSRVQYLDLKLNEID---------------- 157
Query: 304 LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLS 363
+ + +E + L N I + +V + LK + LS
Sbjct: 158 ----------------TVNFAELAASSDTLEHLNLQYNF-IYDVKGQV-VFAKLKTLDLS 199
Query: 364 NNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIP 423
+NKL+ + E + + I+L N L IE LE DL N
Sbjct: 200 SNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR---FSQNLEHFDLRGNGFH-CGT 253
Query: 424 KEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNN---NLNGSIPEKIADLAQL 480
++ ++ + + T + G +L +++ L
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHH 313
Query: 481 QF 482
Sbjct: 314 HH 315
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 57/326 (17%), Positives = 112/326 (34%), Gaps = 53/326 (16%)
Query: 168 SLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRL 227
++ + + +S + S +K LD SGN + L T+L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 228 QDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFT 287
+ L+LS N+L +L +L LD++NN + E+ + + N +
Sbjct: 61 ELLNLSSNVLY---ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112
Query: 288 GSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRI 347
+ G ++++L NN+
Sbjct: 113 -RVSCSRG-----------------------------------QGKKNIYLANNKITMLR 136
Query: 348 PLEVGNCSMLKYIRLSNNKLSG-SIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLS 406
L+ G S ++Y+ L N++ + S++L +NL N + V +
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-----FA 191
Query: 407 QLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNL 466
+L+ LDLSSN L + E + + + L +N I L S +L +L N
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249
Query: 467 NGSIPEKIADLAQLQFLDLSYNNLSR 492
+ + + ++ + +
Sbjct: 250 H-CGTLRDFFSKNQRVQTVAKQTVKK 274
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 45/278 (16%), Positives = 96/278 (34%), Gaps = 45/278 (16%)
Query: 317 NQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELN 376
+ L L S ++ + L+ N ++ + L+ + LS+N L +L
Sbjct: 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETL-DLE 77
Query: 377 DSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILK 436
+L ++L+ N + + +E L ++N ++ R+ + + +
Sbjct: 78 SLSTLRTLDLNNNYVQ-ELL-------VGPSIETLHAANNNIS-RVSCSR--GQGKKNIY 126
Query: 437 LNSNFFNGSIPMRLGDSTSLNILELGNNNLNG-SIPEKIADLAQLQFLDLSYNNLSRPIL 495
L +N + G + + L+L N ++ + E A L+ L+L YN +
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---- 182
Query: 496 SKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCS 555
++ + DLS N L+ ++ +
Sbjct: 183 ----------DVKGQVVFAKLKTLDLSSNKLA----------------FMGPEFQSAAGV 216
Query: 556 VKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGNN 593
++L NKL ++ + L + DL N F
Sbjct: 217 TWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGT 253
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 45/245 (18%), Positives = 84/245 (34%), Gaps = 26/245 (10%)
Query: 123 PLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETL 182
L LS LR L+L+ N + ++ ++ L N +S + + +
Sbjct: 74 LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNI 125
Query: 183 SLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNG-TVPIRLGELTRLQDLDLSDNLLSGSL 241
L +N T + G +++ LD N + L+ L+L N +
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--- 182
Query: 242 TVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFK 301
V L LD+S+N L+ + PE ++ L N+ I+ L +N
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN-- 238
Query: 302 SVLAELQIFTFSAGMNQLS-GPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYI 360
L+ F N G L + K ++++V + + E C++
Sbjct: 239 -----LEHFDLRG--NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE--ECTVPTLG 289
Query: 361 RLSNN 365
Sbjct: 290 HYGAY 294
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 37/185 (20%)
Query: 404 NLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGN 463
N ++ + ++ + L + + +++ L L+ N + L T L +L L +
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 464 NNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSY 523
N L + + L+ L+ LDL+ N + +L + +
Sbjct: 68 NVLY-ETLD-LESLSTLRTLDLNNNYVQ-----------------ELLVGPSIETLHAAN 108
Query: 524 NMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLD 583
N +S + G + + L+ NK+++L G + + LD
Sbjct: 109 NNISR-VSCSRG-----------QGK------KNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 584 LSYNE 588
L NE
Sbjct: 151 LKLNE 155
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 5e-11
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 8/163 (4%)
Query: 120 PVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWL 179
+ L L LNL N + +LK L L N+L+ + + +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216
Query: 180 ETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFN-GTVPIRLGELTRLQDLDLSDNLLS 238
+SL +N + L + L+ D GNGF+ GT+ + R+Q +
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-- 273
Query: 239 GSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYL 281
LT + P L L H+
Sbjct: 274 -KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 41/157 (26%)
Query: 445 SIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHE 504
+I + I ++ +++L ++ ++ LDLS N LS ++
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS----QISAADLAP 56
Query: 505 --------------VNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLG 550
DL R DL+ N + L
Sbjct: 57 FTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ--------------------ELL 96
Query: 551 HLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
L+ + N +S + S G N+ L+ N
Sbjct: 97 VGPSIETLHAANNNISRV---SCSRGQGKKNIYLANN 130
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 4e-34
Identities = 79/417 (18%), Positives = 144/417 (34%), Gaps = 39/417 (9%)
Query: 113 RTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQ 172
R K S L +D +++ + L K+++ + + +
Sbjct: 6 RQPEYKCIDSNLQYDCV-FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64
Query: 173 LGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDL 232
L +E L+L ++ L N P + L L L
Sbjct: 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124
Query: 233 SDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFTGSIQ 291
N LS SL +F N L+ L +SNN L I + L + L N+ T +
Sbjct: 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD 181
Query: 292 SELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV 351
S L + N LS L +E + ++N I + V
Sbjct: 182 LS-----LIPS-LFHANV-----SYNLLST-----LAIPIAVEELDASHNS-INVVRGPV 224
Query: 352 GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKL 411
L ++L +N L+ L + LVE++L N L + F + +LE+L
Sbjct: 225 --NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFV---KMQRLERL 277
Query: 412 DLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIP 471
+S+N L + + ++++L L+ N + L L L +N++ ++
Sbjct: 278 YISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK 334
Query: 472 EKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSG 528
L+ L LS+N+ + + F N+ + + + Y + G
Sbjct: 335 LST--HHTLKNLTLSHNDWDC---NSLRALFR--NVARPAVDDADQHCKIDYQLEHG 384
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 4e-31
Identities = 76/430 (17%), Positives = 142/430 (33%), Gaps = 90/430 (20%)
Query: 168 SLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRL 227
+ S L + + + E + K + F + L ++
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71
Query: 228 QDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQF 286
+ L+L+D + + F ++ L + N + +PP + ++ L+ L N
Sbjct: 72 ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND- 128
Query: 287 TGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGR 346
L+ L F +L ++ ++NN + R
Sbjct: 129 -----------------LSSLPRGIF-HNTPKL--------------TTLSMSNNN-LER 155
Query: 347 IPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNL 405
I + + L+ ++LS+N+L+ + L S L N+ N+LS
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS--LFHANVSYNLLS--------TLAIP 204
Query: 406 SQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNN 465
+E+LD S N + + + + ILKL N L + L ++L N
Sbjct: 205 IAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNE 259
Query: 466 LNGSIPEKI-ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIP-DLSYSHNYRKFDLSY 523
L I + +L+ L +S N L + + DLS+
Sbjct: 260 LE-KIMYHPFVKMQRLERLYISNNRLV--------------ALNLYGQPIPTLKVLDLSH 304
Query: 524 NMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLD 583
N L ++ R+ L L N + L + L NL
Sbjct: 305 NHLL----------------HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLT 345
Query: 584 LSYNEFDGNN 593
LS+N++D N+
Sbjct: 346 LSHNDWDCNS 355
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 2e-33
Identities = 49/335 (14%), Positives = 106/335 (31%), Gaps = 30/335 (8%)
Query: 167 GSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTR 226
GS + E L ++ L ++ + D + R
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57
Query: 227 LQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQF 286
Q + L + + L++ + L P + L L +
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116
Query: 287 TGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGR 346
+ + L+ T + N L LP+ + N++ + + +
Sbjct: 117 M-ELPDTMQQFAG-------LETLTLAR--NPLRA-LPASIASLNRLRELSIRACPELTE 165
Query: 347 IPLEVGNCSM---------LKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIED 397
+P + + L+ +RL + S+P + + ++L + + + LS +
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGP 223
Query: 398 VFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLN 457
+L +LE+LDL P G ++ L L ++P+ + T L
Sbjct: 224 AIH---HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280
Query: 458 ILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSR 492
L+L +P IA L + + + ++
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 4e-31
Identities = 46/310 (14%), Positives = 100/310 (32%), Gaps = 34/310 (10%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTW--LETL 182
L + + ++ + + N ++ + L + L T L
Sbjct: 32 LSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRALK-ATADLLEDATQPGRVAL 86
Query: 183 SLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLT 242
L S + P + + L+ + G +P + + L+ L L+ N L +L
Sbjct: 87 ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALP 143
Query: 243 VSLFTNLQSLSYLDVSNNLLSGNIPPEI---------SHLKKLSDHYLGINQFTGSIQSE 293
S+ +L L L + +P + L L L S+ +
Sbjct: 144 ASI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201
Query: 294 LGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGN 353
+ N +N L L + LS L + ++E + L + P G
Sbjct: 202 IANLQN----LKSL-----KIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 354 CSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDL 413
+ LK + L + ++P +++ L +++L G + + + L + +
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA---QLPANCIILV 308
Query: 414 SSNMLTGRIP 423
++
Sbjct: 309 PPHLQAQLDQ 318
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-27
Identities = 46/307 (14%), Positives = 85/307 (27%), Gaps = 51/307 (16%)
Query: 294 LGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGN 353
+ L + ++ N + + + +
Sbjct: 19 FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRA-LKATADLLED 77
Query: 354 CSM--LKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKL 411
+ + L + L P + L + +D L + D + LE L
Sbjct: 78 ATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ---QFAGLETL 132
Query: 412 DLSSNMLTGRIPKEIGNLRSIQILKLNSN---------FFNGSIPMRLGDSTSLNILELG 462
L+ N L +P I +L ++ L + + + +L L L
Sbjct: 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191
Query: 463 NNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPD-LSYSHNYRKFDL 521
+ S+P IA+L L+ L + + LS + + + + DL
Sbjct: 192 WTGIR-SLPASIANLQNLKSLKIRNSPLSA--------------LGPAIHHLPKLEELDL 236
Query: 522 SYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSG-NKLSVLVPTSFGNLNGLT 580
L + P G + +L L + L L P L L
Sbjct: 237 RGC-------TALRN--------YPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLE 280
Query: 581 NLDLSYN 587
LDL
Sbjct: 281 KLDLRGC 287
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 3/143 (2%)
Query: 121 VSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLE 180
S L L+ L L + P+ ++NL+ LK L + + LS +L + L LE
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE 232
Query: 181 TLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGS 240
L L + P G LK L T+P+ + LT+L+ LDL +
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292
Query: 241 LTVSLFTNLQSLSYLDVSNNLLS 263
L + L + + V +L +
Sbjct: 293 LPSLI-AQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 24/188 (12%), Positives = 39/188 (20%), Gaps = 60/188 (31%)
Query: 404 NLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGN 463
+ S E L + + + N R +S + I
Sbjct: 10 HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTG 65
Query: 464 NNLNGSIPEKIADLAQ--LQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDL 521
L + + + D Q L+L L +
Sbjct: 66 RALK-ATADLLEDATQPGRVALELRSVPLPQ----------------------------- 95
Query: 522 SYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTN 581
P LS + + L L P + GL
Sbjct: 96 -----------------------FPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLET 131
Query: 582 LDLSYNEF 589
L L+ N
Sbjct: 132 LTLARNPL 139
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 8e-33
Identities = 74/479 (15%), Positives = 151/479 (31%), Gaps = 55/479 (11%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186
LSKLR+L +S N + + L+ L L N+L + L+ L L
Sbjct: 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCHP--TVNLKHLDLSF 99
Query: 187 NSFTG-EMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSL 245
N+F + E G+M QLK L S + + L + L
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKED 156
Query: 246 FTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSEL--GNCKNFKSV 303
LQ + + + I + + L ++ ++ +
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216
Query: 304 LAELQIFTFSAGMNQLSGPLPSWLGK---WNQMESVWLNNNQFIGRIPLEVGNCS----- 355
++ + + + + + + ++N + G++ + S
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276
Query: 356 MLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSS 415
L ++ ++ ++ N + + +S LD S+
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK---ISPFLHLDFSN 333
Query: 416 NMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS---TSLNILELGNNNLNGSIPE 472
N+LT + + G+L ++ L L N + + SL L++ N+++ +
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392
Query: 473 KIAD-LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIP 531
L L++S N L+ + + DL N +
Sbjct: 393 GDCSWTKSLLSLNMSSNILT--------------DTIFRCLPPRIKVLDLHSNKIKS--- 435
Query: 532 KELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590
IP+ + L +LN++ N+L + F L L + L N +D
Sbjct: 436 -------------IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 60/374 (16%), Positives = 133/374 (35%), Gaps = 22/374 (5%)
Query: 120 PVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWL 179
P+ ++S+L+ L LS L +++L K+L + L
Sbjct: 106 PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQDF 163
Query: 180 ETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSG 239
T SL T + + D+ + + L + + + + LS
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVAN-----------LELSNIKCVLEDNKCSYFLSI 212
Query: 240 SLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKN 299
+ L +L+ ++ S ++ + + + G + +
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272
Query: 300 FKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKY 359
+ L L I + + + +++ ++ + + + S +
Sbjct: 273 --TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP--SKISPFLH 328
Query: 360 IRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLT 419
+ SNN L+ ++ L + L N L + + T + L++LD+S N ++
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 420 GRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLA 478
K +S+ L ++SN +I L + +L+L +N + SIP+++ L
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLE 444
Query: 479 QLQFLDLSYNNLSR 492
LQ L+++ N L
Sbjct: 445 ALQELNVASNQLKS 458
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 32/148 (21%), Positives = 49/148 (33%), Gaps = 37/148 (25%)
Query: 445 SIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHE 504
+P L S IL + N ++ I L++L+ L +S+N +
Sbjct: 14 HVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY------------ 59
Query: 505 VNIPDLSYSHNY--RKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSG 562
+ + N DLS+N L I +L L+LS
Sbjct: 60 --LDISVFKFNQELEYLDLSHNKLVK-IS--------------CHPTVNLK---HLDLSF 99
Query: 563 NKLSVLVPTS-FGNLNGLTNLDLSYNEF 589
N L FGN++ L L LS
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTTHL 127
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 9e-32
Identities = 87/480 (18%), Positives = 163/480 (33%), Gaps = 48/480 (10%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184
L +++ + L K+++ + + + L +E L+L
Sbjct: 23 LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVS 244
++ L N P + L L L N LS SL
Sbjct: 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRG 141
Query: 245 LFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSV 303
+F N L+ L +SNN L I + L + L N+ T + S+
Sbjct: 142 IFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL---------SL 190
Query: 304 LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLS 363
+ L S N L S L +E + ++N I + V L ++L
Sbjct: 191 IPSLFHANVS--YNLL-----STLAIPIAVEELDASHNS-INVVRGPV--NVELTILKLQ 240
Query: 364 NNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIP 423
+N L+ L + LVE++L N L + F + +LE+L +S+N L +
Sbjct: 241 HNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFV---KMQRLERLYISNNRLV-ALN 294
Query: 424 KEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFL 483
+ ++++L L+ N + L L L +N++ ++ ++ L+ L
Sbjct: 295 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNL 350
Query: 484 DLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVV---- 539
LS+N+ + + F N+ + + + Y + G KE +
Sbjct: 351 TLSHNDWDC---NSLRALFR--NVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLL 405
Query: 540 ------VLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGNN 593
+ + R+ G S + +N + + L G L+ NE
Sbjct: 406 QYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEV 465
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 7e-26
Identities = 70/414 (16%), Positives = 140/414 (33%), Gaps = 66/414 (15%)
Query: 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTV 243
+ S L + + L + + ++ + L
Sbjct: 10 KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPA 68
Query: 244 SLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKS 302
+L + + + L++++ + I ++ + Y+G N + + F++
Sbjct: 69 ALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHV-----FQN 121
Query: 303 VLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIR 361
+ L + N LS ++ ++ ++NN + RI + + L+ ++
Sbjct: 122 -VPLLTVLVLER--NDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQ 177
Query: 362 LSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGR 421
LS+N+L+ + L SL N+ N+LS +E+LD S N +
Sbjct: 178 LSSNRLT-HVDLSLI--PSLFHANVSYNLLS--------TLAIPIAVEELDASHNSIN-V 225
Query: 422 IPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKI-ADLAQL 480
+ + + ILKL N L + L ++L N L I + +L
Sbjct: 226 VRGPV--NVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRL 280
Query: 481 QFLDLSYNNLSRPILSKHSSYFHEVNIP-DLSYSHNYRKFDLSYNMLSGPIPKELGSCVV 539
+ L +S N L + + DLS+N L
Sbjct: 281 ERLYISNNRLV--------------ALNLYGQPIPTLKVLDLSHNHLL------------ 314
Query: 540 VLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGNN 593
++ R+ L L N + L + L NL LS+N++D N+
Sbjct: 315 ----HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCNS 361
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 5e-05
Identities = 20/159 (12%), Positives = 42/159 (26%), Gaps = 36/159 (22%)
Query: 436 KLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPE-----KIADLAQLQFLDLSYNNL 490
+ N + DS + +++ + + L + + + +
Sbjct: 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63
Query: 491 SRPILSKHSSYFHEVNIPD--LSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRS 548
+ +P L +L+ + I +
Sbjct: 64 RK--------------LPAALLDSFRQVELLNLNDLQIEE-ID--------------TYA 94
Query: 549 LGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
+ KL + N + L P F N+ LT L L N
Sbjct: 95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 3e-31
Identities = 77/319 (24%), Positives = 130/319 (40%), Gaps = 21/319 (6%)
Query: 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188
++ R+L+L +N + + ++ L+ L L EN +S P L L TL L SN
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 189 FTGEMPSE-LGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFT 247
+P + L LD S N + +L L+ L++ DN L ++ F+
Sbjct: 92 LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149
Query: 248 NLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAE 306
L SL L + L+ +IP E SHL L L L
Sbjct: 150 GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR----LKV 204
Query: 307 LQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNN 365
L+I + L P+ L N + S+ + + + +P + L+++ LS N
Sbjct: 205 LEI----SHWPYLDTMTPNCLYGLN-LTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYN 258
Query: 366 KLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKE 425
+S L++ L EI L G L+ F L+ L L++S N LT + +
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF---RGLNYLRVLNVSGNQLT-TLEES 314
Query: 426 I-GNLRSIQILKLNSNFFN 443
+ ++ +++ L L+SN
Sbjct: 315 VFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 9e-30
Identities = 63/341 (18%), Positives = 117/341 (34%), Gaps = 26/341 (7%)
Query: 156 KMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNG 215
+ + + ++P + T L L N E L+ L+ + N +
Sbjct: 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70
Query: 216 TVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLK 274
P L L+ L L N L + + +FT L +L+ LD+S N + + + L
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLY 128
Query: 275 KLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQME 334
L +G N I F L L+ T L+ L + +
Sbjct: 129 NLKSLEVGDNDLV-YISHRA-----FSG-LNSLEQLTLEK--CNLTSIPTEALSHLHGLI 179
Query: 335 SVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSG 393
+ L + I I LK + +S+ ++ +L +++ L+
Sbjct: 180 VLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238
Query: 394 TIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMR-LG 451
+L L L+LS N ++ I + L +Q ++L +
Sbjct: 239 VPYLAV---RHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFR 293
Query: 452 DSTSLNILELGNNNLNGSIPEKI-ADLAQLQFLDLSYNNLS 491
L +L + N L ++ E + + L+ L L N L+
Sbjct: 294 GLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-29
Identities = 59/318 (18%), Positives = 120/318 (37%), Gaps = 21/318 (6%)
Query: 154 RLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGF 213
++L LG+N++ + LE L L N + P ++ L++L N
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 214 NGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SH 272
L+ L LD+S+N + L +F +L +L L+V +N L I S
Sbjct: 93 KLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSG 150
Query: 273 LKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQ 332
L L L T SI +E L L + ++ + +
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEA-----LSH-LHGLIVLRLRH--LNINAIRDYSFKRLYR 201
Query: 333 MESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRE-LNDSESLVEINLDGNML 391
++ + +++ ++ + L + +++ L+ ++P + L +NL N +
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI 260
Query: 392 SGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRL 450
S + L +L+++ L L + L +++L ++ N ++ +
Sbjct: 261 STIEGSML---HELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESV 315
Query: 451 GDS-TSLNILELGNNNLN 467
S +L L L +N L
Sbjct: 316 FHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 70/410 (17%), Positives = 136/410 (33%), Gaps = 100/410 (24%)
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVS 244
C +P + + + LD N L++L+L++N++S ++
Sbjct: 18 CHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPG 74
Query: 245 LFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSV 303
F NL +L L + +N L IP + + L L+ + N+
Sbjct: 75 AFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENK------------------ 115
Query: 304 LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRL 362
+ L + F + L +S+ + +N + I + L+ + L
Sbjct: 116 IVILLDYMFQ-DLYNL--------------KSLEVGDND-LVYISHRAFSGLNSLEQLTL 159
Query: 363 SNNKLSGSIPRE-LNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGR 421
L+ SIP E L+ L+ + L ++ + F L +L+ L++S
Sbjct: 160 EKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSF---KRLYRLKVLEISHWPYLDT 215
Query: 422 IPKEIGNLRSIQILKLNSNFFNGSIPMR-LGDSTSLNILELGNNNLNGSIPEKI-ADLAQ 479
+ ++ L + ++P + L L L N ++ +I + +L +
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLR 273
Query: 480 LQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVV 539
LQ + L L+ + G
Sbjct: 274 LQEIQLVGGQLA----------------------------VVEPYAFRG----------- 294
Query: 540 VLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEF 589
L +L LN+SGN+L+ L + F ++ L L L N
Sbjct: 295 ---------LNYLR---VLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 8e-19
Identities = 45/234 (19%), Positives = 91/234 (38%), Gaps = 41/234 (17%)
Query: 360 IRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLT 419
+ + ++P + ++L N + +D F + LE+L+L+ N+++
Sbjct: 16 VLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEF---ASFPHLEELELNENIVS 69
Query: 420 GRIPKEIGNLRSIQILKLNSNFFNGSIPMR-LGDSTSLNILELGNNNLNGSIPEKI-ADL 477
P NL +++ L L SN IP+ ++L L++ N + + + + DL
Sbjct: 70 AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDL 127
Query: 478 AQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSH--NYRKFDLSYNMLSGPIPKELG 535
L+ L++ N+L I ++S + + L L+ IP
Sbjct: 128 YNLKSLEVGDNDLV--------------YISHRAFSGLNSLEQLTLEKCNLTS-IP---- 168
Query: 536 SCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEF 589
+L HL + L L ++ + SF L L L++S+ +
Sbjct: 169 ----------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 2e-18
Identities = 50/251 (19%), Positives = 91/251 (36%), Gaps = 39/251 (15%)
Query: 121 VSPLLF-DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWL 179
+ +F DL L+ L + N L S L L+ L+L + L+ L L L
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178
Query: 180 ETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSG 239
L L + + +LK L+ S + T+ L L ++ L+
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237
Query: 240 SLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCK 298
++ +L L +L++S N +S I + L +L + L Q
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQ------------- 283
Query: 299 NFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSML 357
LA ++ + F G+N L + ++ NQ + + V + L
Sbjct: 284 -----LAVVEPYAFR-GLNYL--------------RVLNVSGNQ-LTTLEESVFHSVGNL 322
Query: 358 KYIRLSNNKLS 368
+ + L +N L+
Sbjct: 323 ETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 6e-06
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 30/136 (22%)
Query: 453 STSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSY 512
S + ++PE I + + LDL N + +N + +
Sbjct: 10 SAQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK------------TLNQDEFAS 54
Query: 513 SHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTS 572
+ + +L+ N++S + P + +L L L N+L ++
Sbjct: 55 FPHLEELELNENIVSA-VE--------------PGAFNNLFNLRTLGLRSNRLKLIPLGV 99
Query: 573 FGNLNGLTNLDLSYNE 588
F L+ LT LD+S N+
Sbjct: 100 FTGLSNLTKLDISENK 115
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-30
Identities = 85/389 (21%), Positives = 138/389 (35%), Gaps = 63/389 (16%)
Query: 128 LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187
+ VLN+ ++ L P + L + +N L+ SLP+ L TL + N
Sbjct: 39 NNGNAVLNVGESGLTTLPD---CLPAHITTLVIPDNNLT-SLPALPPELR---TLEVSGN 91
Query: 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFT 247
T +P + +L + L L + N L+ SL
Sbjct: 92 QLT-SLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLT-----SLPV 138
Query: 248 NLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAEL 307
L L VS+N L+ ++P S L KL + NQ T S+ L EL
Sbjct: 139 LPPGLQELSVSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPSG-------LQEL 186
Query: 308 QIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKL 367
S NQL+ LP+ ++ +W NN+ +P LK + +S N+L
Sbjct: 187 -----SVSDNQLAS-LPTLPS---ELYKLWAYNNRLT-SLPALPSG---LKELIVSGNRL 233
Query: 368 SGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIG 427
+ S+P + L E+ + GN L+ ++ S L L + N LT R+P+ +
Sbjct: 234 T-SLPVLPS---ELKELMVSGNRLT-SLPM------LPSGLLSLSVYRNQLT-RLPESLI 281
Query: 428 NLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNN----LNGSIPEKIADLAQLQFL 483
+L S + L N + ++ + G S P + L
Sbjct: 282 HLSSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340
Query: 484 DLSYNNLSRPILSKH-SSYFHEVNIPDLS 511
L P + + E N S
Sbjct: 341 WLVPAREGEPAPADRWHMFGQEDNADAFS 369
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 3e-29
Identities = 81/390 (20%), Positives = 130/390 (33%), Gaps = 108/390 (27%)
Query: 201 KQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNN 260
L+ +G T+P L + L + DN L+ SL L L+VS N
Sbjct: 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-----SLPALPPELRTLEVSGN 91
Query: 261 LLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLS 320
L+ ++P L +LS + L +L IF NQL+
Sbjct: 92 QLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-----------LCKLWIFG-----NQLT 134
Query: 321 GPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSES 380
LP ++ + +++NQ + +P L + NN+L+ S+P
Sbjct: 135 S-LPVLPP---GLQELSVSDNQ-LASLPALPSE---LCKLWAYNNQLT-SLPMLP---SG 182
Query: 381 LVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSN 440
L E+++ N L+ ++ S+L KL +N LT +P L+ L ++ N
Sbjct: 183 LQELSVSDNQLA-SLPT------LPSELYKLWAYNNRLT-SLPALPSGLKE---LIVSGN 231
Query: 441 FFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSS 500
S+P+ L L + N L S+P + L L + N L+R
Sbjct: 232 RLT-SLPVLPS---ELKELMVSGNRLT-SLPMLPS---GLLSLSVYRNQLTR-------- 275
Query: 501 YFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNL 560
+P SL HLS +NL
Sbjct: 276 --------------------------------------------LPESLIHLSSETTVNL 291
Query: 561 SGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590
GN LS + + FD
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGPIIRFD 321
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 4e-17
Identities = 45/246 (18%), Positives = 77/246 (31%), Gaps = 53/246 (21%)
Query: 349 LEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQL 408
+ + + + + L+ ++P L + + + N L+ +L
Sbjct: 34 MRACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLTSLPA-------LPPEL 83
Query: 409 EKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNG 468
L++S N LT +P L + I + L L + N L
Sbjct: 84 RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT- 134
Query: 469 SIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSG 528
S+P LQ L +S N L+ ++P L K N L+
Sbjct: 135 SLPV---LPPGLQELSVSDNQLA--------------SLPALP--SELCKLWAYNNQLTS 175
Query: 529 PIPKELGSCVVVLT------GYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNL 582
+P + L+ +P L KL N+L+ L P L L
Sbjct: 176 -LPMLPSG-LQELSVSDNQLASLPTLPSELY---KLWAYNNRLTSL-PALPSGL---KEL 226
Query: 583 DLSYNE 588
+S N
Sbjct: 227 IVSGNR 232
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 3e-16
Identities = 36/190 (18%), Positives = 58/190 (30%), Gaps = 40/190 (21%)
Query: 405 LSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNN 464
+ L++ + LT +P + I L + N S+P L LE+ N
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPP---ELRTLEVSGN 91
Query: 465 NLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYN 524
L S+P L +L +L +P K + N
Sbjct: 92 QLT-SLPVLPPGLLELSIFSNPLTHLP--------------ALPS-----GLCKLWIFGN 131
Query: 525 MLSGPIPKELGSCVVVLTGY-----IPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGL 579
L+ +P + +P L KL N+L+ L P L
Sbjct: 132 QLTS-LPVLPPGLQELSVSDNQLASLPALPSEL---CKLWAYNNQLTSL-PMLPSGL--- 183
Query: 580 TNLDLSYNEF 589
L +S N+
Sbjct: 184 QELSVSDNQL 193
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-28
Identities = 75/373 (20%), Positives = 131/373 (35%), Gaps = 35/373 (9%)
Query: 121 VSPLLFD-LSKLRVLNLSQNLLFGQPSPQV-SNLKRLKMLSLGENQLSGSLPSQ-LGVLT 177
++ F L L+ L + Q L L +L L NQ L + L
Sbjct: 45 LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLA 103
Query: 178 WLETLSLCSNSFTGEMPSE--LGDMKQLKSLDFSGNGFNGTVPIRL-GELTRLQDLDLSD 234
LE L+L + G + S + L+ L N P + R LDL+
Sbjct: 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163
Query: 235 NLLSGSLTVSLFTNLQSLS----------YLDVSNNLLSGNIPPEISHLKKLSDHYLGIN 284
N + S+ N Q D++ L ++ L N
Sbjct: 164 NKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222
Query: 285 QFT----GSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLG--KWNQMESVWL 338
F + K +L+ S G P + + +++ L
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL 282
Query: 339 NNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDS-ESLVEINLDGNMLSGTIE 396
+ ++ I + V + + L+ + L+ N+++ I L+++NL N L
Sbjct: 283 SKSK-IFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 397 DVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDS-T 454
+F NL +LE LDLS N + + + L +++ L L++N S+P + D T
Sbjct: 341 RMF---ENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLT 395
Query: 455 SLNILELGNNNLN 467
SL + L N +
Sbjct: 396 SLQKIWLHTNPWD 408
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-25
Identities = 86/479 (17%), Positives = 141/479 (29%), Gaps = 121/479 (25%)
Query: 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQL-GVLTWLETLSLCSNSF 189
+ ++LS N + S L+ L+ L + + + + L+ L L L N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-- 89
Query: 190 TGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLL-SGSLTVSLFTN 248
Q L FNG L L+ L L+ L L+ + F
Sbjct: 90 ------------QFLQL--ETGAFNG--------LANLEVLTLTQCNLDGAVLSGNFFKP 127
Query: 249 LQSLSYLDVSNNLLSGNIPPEI--SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAE 306
L SL L + +N + I P ++++ L N+ C+
Sbjct: 128 LTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSI-------CEEDLLNFQG 179
Query: 307 LQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNK 366
L +N + + + LS N
Sbjct: 180 KHFTLLRLSSITLQ----------------DMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223
Query: 367 LSGSIPRELNDSESLVEI-----NLDGNMLSGTIEDVFGRCTNL-------SQLEKLDLS 414
S+ + D+ + +I + NM S F N S ++ DLS
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283
Query: 415 SNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKI 474
+ + L + F+ T L L L N +N I +
Sbjct: 284 KSKIF----------------ALLKSVFSHF--------TDLEQLTLAQNEIN-KIDDNA 318
Query: 475 -ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSH--NYRKFDLSYNMLSGPIP 531
L L L+LS N L +I + + DLSYN + +
Sbjct: 319 FWGLTHLLKLNLSQNFLG--------------SIDSRMFENLDKLEVLDLSYNHIRA-LG 363
Query: 532 KELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590
+ G L +L +L L N+L + F L L + L N +D
Sbjct: 364 DQ------SFLG-----LPNLK---ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 9e-20
Identities = 61/368 (16%), Positives = 113/368 (30%), Gaps = 89/368 (24%)
Query: 225 TRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGI 283
+ +DLS N ++ L + F+ LQ L +L V I L L L
Sbjct: 30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 284 NQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQF 343
NQF +++ F LA L++ T + ++ L+ N F
Sbjct: 89 NQFL-QLETGA-----FNG-LANLEVLTLT----------------QCNLDGAVLSGNFF 125
Query: 344 IGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDS-ESLVEINLDGNMLSGTIEDVFGRC 402
+ L+ + L +N + P + ++L N + E+
Sbjct: 126 K--------PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177
Query: 403 TNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELG 462
L LSS + +N + +TS+ L+L
Sbjct: 178 QGK-HFTLLRLSSI----------------TLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220
Query: 463 NNNLNGSIPEKIAD-LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDL 521
N S+ ++ D +A + L +N S + F + + ++ L
Sbjct: 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK--DPDNFTF------KGL 272
Query: 522 SYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTN 581
+ + +LS +K+ L+ + F + L
Sbjct: 273 EASGVK-----------------------------TCDLSKSKIFALLKSVFSHFTDLEQ 303
Query: 582 LDLSYNEF 589
L L+ NE
Sbjct: 304 LTLAQNEI 311
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 42/207 (20%), Positives = 65/207 (31%), Gaps = 19/207 (9%)
Query: 98 KDLEELLLRVVY-QVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLK 156
K L L + Q + L F + + L+LS N + + +
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239
Query: 157 ML-------------SLGENQLSGSLPSQLGVLTW--LETLSLCSNSFTGEMPSELGDMK 201
+ S G L ++T L + + S
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299
Query: 202 QLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNL 261
L+ L + N N LT L L+LS N L S+ +F NL L LD+S N
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNH 358
Query: 262 LSGNIPPEI-SHLKKLSDHYLGINQFT 287
+ + + L L + L NQ
Sbjct: 359 IR-ALGDQSFLGLPNLKELALDTNQLK 384
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 37/156 (23%)
Query: 454 TSLNILELGNNNLNGSIPEK-IADLAQLQFLDLSYNNLSRPILSKHSSYFHE-VNIPDLS 511
+N ++L N++ + E + L LQFL + I ++ F ++ L
Sbjct: 30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILK 85
Query: 512 YSHNY---------------RKFDLSYNML-SGPIPKELGSCVVVLTGYIPRSLGHLSCS 555
+N L+ L + L+
Sbjct: 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS--------------GNFFKPLTSL 131
Query: 556 VKLNLSGNKLSVLVP-TSFGNLNGLTNLDLSYNEFD 590
L L N + + P + F N+ LDL++N+
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 32/71 (45%), Positives = 53/71 (74%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+KA+NILL+E+F+A V DFGLA+L+ +H++T V I ++ PEY K++E+ ++
Sbjct: 159 DVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDV 218
Query: 685 YRFGVVLLELV 695
+ +GV+LLEL+
Sbjct: 219 FGYGVMLLELI 229
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK 624
+ F KN +G GGFG V+KG + DG VAVK+
Sbjct: 30 DNFSNKNILGRGGFGKVYKGRLADGTLVAVKR 61
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-26
Identities = 79/492 (16%), Positives = 159/492 (32%), Gaps = 79/492 (16%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186
L+ L L+ + + + L L L N ++ +L L T L L+ S
Sbjct: 40 QLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDS 94
Query: 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLF 246
N T ++ + +L L+ N + + + L L+ + N L+ + VS
Sbjct: 95 NKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EIDVSHN 147
Query: 247 TNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAE 306
T L LD N +++ +L+ N+ T + ++ K
Sbjct: 148 TQLT---ELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKIT---ELDVSQNKLLN----- 194
Query: 307 LQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNK 366
+ N ++ L L + Q+ + ++N+ ++V + L Y S N
Sbjct: 195 ----RLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNP 244
Query: 367 LSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI 426
L+ + L ++ L I+ T+ +QL + ++
Sbjct: 245 LT-ELDVSTL--SKLTTLHCIQTDLL-EID-----LTHNTQLIYFQAEGCRKIKEL--DV 293
Query: 427 GNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLS 486
+ + +L + + L + L L L N L + ++ +L+ L
Sbjct: 294 THNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCV 347
Query: 487 YNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIP 546
++ + + + +PKE + LT +
Sbjct: 348 NAHIQ--------------DFSSVGKIPALNNNFEAEGQTIT-MPKETLTN-NSLTIAVS 391
Query: 547 RSLGHLSCSVKLNLSGNKLSVLVP---TSFGNLNGLTNLDLSYNEFDGNNKFCEKNGIGG 603
L L+ GN +++ N +T +LS + F +NG
Sbjct: 392 PDL--------LDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIV 443
Query: 604 GGFGTVFKGTMP 615
G T F+ P
Sbjct: 444 GTVTTPFEAPQP 455
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 4e-26
Identities = 73/450 (16%), Positives = 142/450 (31%), Gaps = 72/450 (16%)
Query: 150 SNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209
N + Q L L +L ++S T + + + L L +
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQ---LATLTSLDCHNSSITD--MTGIEKLTGLTKLICT 72
Query: 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPE 269
N + L + T L L N L+ +L V+ L L+YL+ N L+ +
Sbjct: 73 SNNITT---LDLSQNTNLTYLACDSNKLT-NLDVT---PLTKLTYLNCDTNKLT-KLD-- 122
Query: 270 ISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGK 329
+S L+ N T + ++ + + +N+ L +
Sbjct: 123 VSQNPLLTYLNCARNTLT---EIDVSHNTQLTEL---------DCHLNKKITKLD--VTP 168
Query: 330 WNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGN 389
Q+ ++ + N+ L+V +L + N ++ + LN + L ++ N
Sbjct: 169 QTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSN 222
Query: 390 MLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMR 449
L+ I+ T L+QL D S N LT + + L + L I
Sbjct: 223 KLT-EIDV-----TPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL-EID-- 270
Query: 450 LGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSS----YFHEV 505
L +T L + + + QL LD ++ LS++ Y +
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328
Query: 506 NIPDLSYSHNY--RKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGN 563
+ +L SHN + + S+G + +
Sbjct: 329 ELTELDVSHNTKLKSLSCVNAHIQ----------------DFS-SVGKIPALNNNFEAEG 371
Query: 564 KLSVLVPTSFGNLNGLTNLDLSYNEFDGNN 593
+ + + N + + + GN
Sbjct: 372 QTITMPKETLTNNSLTIAVSPDLLDQFGNP 401
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 7e-22
Identities = 64/352 (18%), Positives = 114/352 (32%), Gaps = 48/352 (13%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184
+ L LN ++N L VS+ +L L N+ L + T L TL
Sbjct: 123 VSQNPLLTYLNCARNTL---TEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDC 177
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVS 244
N T ++ K L L+ N + L + +L LD S N L+ + V+
Sbjct: 178 SFNKITE---LDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EIDVT 230
Query: 245 LFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVL 304
L L+Y D S N L+ + +S L KL+ + + +L +
Sbjct: 231 ---PLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQ 281
Query: 305 AELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSN 364
AE G ++ + Q+ + L++ L Y+ L+N
Sbjct: 282 AE--------GCRKIK---ELDVTHNTQLYLLDCQAAGI---TELDLSQNPKLVYLYLNN 327
Query: 365 NKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPK 424
+L+ + ++ + L ++ + V + L + +PK
Sbjct: 328 TELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSV----GKIPALNNNFEAEGQTI-TMPK 378
Query: 425 EIGNLRSIQILKLNSNFFNG----SIPMRLGDSTSLNILELGNNNLNGSIPE 472
E S+ I +I G + NL+ P
Sbjct: 379 ETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPA 430
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 7e-15
Identities = 59/355 (16%), Positives = 107/355 (30%), Gaps = 63/355 (17%)
Query: 122 SPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLET 181
+ ++L L+ S N + VS K L L+ N ++ L L L
Sbjct: 163 KLDVTPQTQLTTLDCSFNKI---TELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTF 216
Query: 182 LSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSL 241
L SN +L +D + LT+L D S N L+ L
Sbjct: 217 LDCSSN--------------KLTEIDVTP-------------LTQLTYFDCSVNPLT-EL 248
Query: 242 TVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFK 301
VS + L + L L I ++H +L Y + ++ +
Sbjct: 249 DVSTLSKLTT---LHCIQTDLL-EID--LTHNTQLI--YFQAEGCRKIKELDVTHNTQ-- 298
Query: 302 SVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIR 361
++ ++ L L + ++ ++LNN + L+V + + LK +
Sbjct: 299 -------LYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTE---LDVSHNTKLKSLS 345
Query: 362 LSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVF--GRCTNLSQLEKLDLSSNMLT 419
N + + +L ++ T + LD N +
Sbjct: 346 CVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403
Query: 420 GRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKI 474
I G + + + P TS N +G P+ I
Sbjct: 404 --IEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQPI 456
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 2e-26
Identities = 88/480 (18%), Positives = 153/480 (31%), Gaps = 56/480 (11%)
Query: 126 FD-LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184
LS+LRVL LS N + + L+ L + N+L ++ + L L L
Sbjct: 72 ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDL 128
Query: 185 CSNSFTGEMP--SELGDMKQLKSLDFSGNGFNGTVPIRLGEL-TRLQDLDLSDNLLSGSL 241
N F +P E G++ +L L S F + + L LDL + G
Sbjct: 129 SFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGE 187
Query: 242 TVSLF-TNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNF 300
T SL N L + N+L S + ++ L L + +N +
Sbjct: 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247
Query: 301 KSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCS----- 355
L + + +E + + N RI E S
Sbjct: 248 GPTLLNVTLQHIETTWKCSVKLFQ--FFWPRPVEYLNIYNLTITERIDREEFTYSETALK 305
Query: 356 MLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSS 415
L + N S + + L + ++ L+ +
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF---TFLNFTQ 362
Query: 416 NMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIA 475
N+ T + + L+ +Q L L N + + +++ LE + +LN S+
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLN-SLNSHAY 420
Query: 476 D-----LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPI 530
D + L+LS N L+ + + DL N +
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRC--------------LPPKVKVLDLHNNRIMS-- 464
Query: 531 PKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590
IP+ + HL +LN++ N+L + F L L + L N +D
Sbjct: 465 --------------IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 8e-18
Identities = 75/460 (16%), Positives = 150/460 (32%), Gaps = 61/460 (13%)
Query: 168 SLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRL-GELTR 226
+P + + LSL NS + ++ + +L+ L S N ++ +
Sbjct: 45 HVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD 101
Query: 227 LQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL-SGNIPPEISHLKKLSDHYLGINQ 285
L+ LD+S N L +++ + SL +LD+S N + E +L KL+ L +
Sbjct: 102 LEYLDVSHNRLQ-NIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157
Query: 286 FTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLS---GPLPSWLGKWNQMESVWLNNNQ 342
F + +A L + + G S + + + N
Sbjct: 158 FR----------QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207
Query: 343 FIGRIPLEVGN---CSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVF 399
N L I+L++ + + +N+ + T +
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267
Query: 400 G--RCTNLSQLEKLDLSSNMLTGRIPKEIGN-----LRSIQILKLNSNFFNGSIPMRLGD 452
+ +E L++ + +T RI +E L+S+ I + + F S
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327
Query: 453 STSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSY 512
+NI L ++ + FL+ + N + + S+ + L
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL---KRLQTLIL 384
Query: 513 SHN-----YRKFDLSYNM----LSGPIPKELGSCVVVLTGYIPRSLGHLSCSV------- 556
N ++ ++ NM L S T S+ L+ S
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Query: 557 ---------KLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
L+L N++ + P +L L L+++ N
Sbjct: 445 FRCLPPKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASN 483
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 2e-15
Identities = 64/402 (15%), Positives = 114/402 (28%), Gaps = 58/402 (14%)
Query: 202 QLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNL 261
+D+S VP L R + L LS N +S L + + L L L +S+N
Sbjct: 32 LESMVDYSNRNLT-HVPKDL--PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNR 87
Query: 262 LSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQL- 319
+ ++ + + L + N+ +I C S L L + N
Sbjct: 88 IR-SLDFHVFLFNQDLEYLDVSHNRLQ-NIS-----CCPMAS-LRHLDLSF-----NDFD 134
Query: 320 SGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGS-IPRELNDS 378
P+ G ++ + L+ + ++ L L I L E
Sbjct: 135 VLPVCKEFGNLTKLTFLGLSAAK-FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193
Query: 379 ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLN 438
+ ++L + S V L L+ ++ N + + + LN
Sbjct: 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253
Query: 439 SNFFNGSIP-------MRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491
+ + + L + N + I + ++ L ++
Sbjct: 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313
Query: 492 RPILSKHSSY----FHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPR 547
+ F E+NI LS S + P S T
Sbjct: 314 NQVFLFSKEALYSVFAEMNIKMLSISDT--------PFIHMVCPPSPSS----FT----- 356
Query: 548 SLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEF 589
LN + N + V L L L L N
Sbjct: 357 ---------FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 41/243 (16%)
Query: 354 CSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDL 413
+ + SN L+ +P++L ++L N +S LS+L L L
Sbjct: 30 NELESMVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISF---LSELRVLRL 83
Query: 414 SSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPE 472
S N + + + + ++ L ++ N +I SL L+L N+ + +P
Sbjct: 84 SHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLDLSFNDFD-VLPV 138
Query: 473 --KIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPI 530
+ +L +L FL LS + + L +H + L +
Sbjct: 139 CKEFGNLTKLTFLGLSAAKFRQ--------------LDLLPVAHLHLSCILLDLVSYH-- 182
Query: 531 PKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590
+ G SL + + L+L + S+ ++N L +L LS + +
Sbjct: 183 ----------IKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231
Query: 591 GNN 593
N
Sbjct: 232 DEN 234
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 4e-26
Identities = 67/318 (21%), Positives = 116/318 (36%), Gaps = 50/318 (15%)
Query: 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFT 190
+L+L N + NLK L L L N++S P L LE L L N
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 191 GEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLL-SGSLTVSLFTNL 249
E+P ++ K L+ L N L ++ ++L N L S + F +
Sbjct: 114 -ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 250 QSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQ 308
+ LSY+ +++ ++ IP + L +L +L N+ T ++
Sbjct: 171 KKLSYIRIADTNIT-TIPQGLPPSLTEL---HLDGNKIT------------------KVD 208
Query: 309 IFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKL 367
+ G+N L + L+ N I + N L+ + L+NNKL
Sbjct: 209 AASLK-GLNNL--------------AKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKL 252
Query: 368 SGSIPRELNDSESLVEINLDGNMLSGTIEDVF---GRCTNLSQLEKLDLSSNMLT-GRIP 423
+P L D + + + L N +S + F G T + + L SN + I
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311
Query: 424 KEI-GNLRSIQILKLNSN 440
+ ++L +
Sbjct: 312 PSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 64/344 (18%), Positives = 119/344 (34%), Gaps = 57/344 (16%)
Query: 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFN 214
L+++ + L +P + L L +N T + ++K L +L N +
Sbjct: 33 LRVVQCSDLGLE-KVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 215 GTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHL 273
P L +L+ L LS N L L + LQ L V N ++ + + + L
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQE---LRVHENEIT-KVRKSVFNGL 144
Query: 274 KKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQM 333
++ LG N S ++ F GM +L
Sbjct: 145 NQMIVVELGTNPLKSS----------------GIENGAFQ-GMKKL-------------- 173
Query: 334 ESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRE-LNDSESLVEINLDGNMLS 392
+ + + I IP G L + L NK++ + L +L ++ L N +S
Sbjct: 174 SYIRIADTN-ITTIP--QGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS 229
Query: 393 GTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG------SI 446
N L +L L++N L ++P + + + IQ++ L++N +
Sbjct: 230 AVDNGSL---ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285
Query: 447 PMRLGDSTSLNILELGNNNLN-GSIPEKI-ADLAQLQFLDLSYN 488
P S + + L +N + I + + L
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 1e-21
Identities = 77/393 (19%), Positives = 132/393 (33%), Gaps = 102/393 (25%)
Query: 202 QLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNL 261
L+ + S G VP L LDL +N ++ + F NL++L L + NN
Sbjct: 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87
Query: 262 LSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLS 320
+S I P + L KL YL NQ + ++ K+ L EL++ N+++
Sbjct: 88 IS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM-----PKT-LQELRV-----HENEIT 134
Query: 321 GPLPSWLGKWNQMESVWLNNNQFIGRIPLEVG---NCSMLKYIRLSNNKLSGSIPRELND 377
S NQM V L N + +E G L YIR+++ ++ +IP+ L
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL-- 190
Query: 378 SESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKL 437
L +L L N +I K+
Sbjct: 191 ---------------------------PPSLTELHLDGN----------------KITKV 207
Query: 438 NSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSK 497
++ G +L L L N+++ +A+ L+ L L+ N L +
Sbjct: 208 DAASLKGL--------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK----- 254
Query: 498 HSSYFHEVNIPD-LSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSV 556
+P L+ + L N +S I S
Sbjct: 255 ---------VPGGLADHKYIQVVYLHNNNISA-IGSN-----DFCPPGYNTKKASYS--- 296
Query: 557 KLNLSGNKLSV--LVPTSFGNLNGLTNLDLSYN 587
++L N + + P++F + + L
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 45/268 (16%), Positives = 85/268 (31%), Gaps = 41/268 (15%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186
L KL L LS+N L P L+ L + EN+++ S L + + L +
Sbjct: 98 PLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEITKVRKSVFNGLNQMIVVELGT 154
Query: 187 NSFTGEM--PSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVS 244
N MK+L + + I G L +L L N ++ + +
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKIT-KVDAA 210
Query: 245 LFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSV 303
L +L+ L +S N +S + ++ L + +L N+ + L + K
Sbjct: 211 SLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY---- 264
Query: 304 LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLS 363
+ + L N + ++ +N F + + L
Sbjct: 265 IQVV----------YLHN---------NNISAI--GSNDFCPPGYNT--KKASYSGVSLF 301
Query: 364 NNKLS-GSIPREL-NDSESLVEINLDGN 389
+N + I + L
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-24
Identities = 65/387 (16%), Positives = 113/387 (29%), Gaps = 55/387 (14%)
Query: 124 LLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183
K + ++N + + L L LS SLP L + L
Sbjct: 32 AWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNLP--PQITVLE 86
Query: 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTV 243
+ N+ +P L+ LD N + T+P L+ LD+ +N L+
Sbjct: 87 ITQNALI-SLPELPA---SLEYLDACDNRLS-TLP---ELPASLKHLDVDNNQLT----- 133
Query: 244 SLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSV 303
L L Y++ NN L+ +P + L+ LS + +S
Sbjct: 134 MLPELPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLTFLPELPES----------- 181
Query: 304 LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESV----WLNNNQFIGRIPLEVGNCSMLKY 359
L L N L LP+ + + E N+ I IP + +
Sbjct: 182 LEAL-----DVSTNLLES-LPAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCT 234
Query: 360 IRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSN--- 416
I L +N LS I L+ + + + S + L+ N
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294
Query: 417 ---MLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNN-------- 465
+ E L S+ + + + + +L +
Sbjct: 295 DVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFA 354
Query: 466 LNGSIPEKIADLAQLQFLDLSYNNLSR 492
+ E D L + +L L
Sbjct: 355 VAADATESCEDRVALTWNNLRKTLLVH 381
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 5e-24
Identities = 61/314 (19%), Positives = 107/314 (34%), Gaps = 44/314 (14%)
Query: 134 LNLSQNLLFGQPS---PQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFT 190
N N + G + ++ + N+ L L + L L + +
Sbjct: 15 QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS 72
Query: 191 GEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQ 250
+P L Q+ L+ + N ++P L+ LD DN LS +L
Sbjct: 73 -SLPDNLP--PQITVLEITQNAL-ISLP---ELPASLEYLDACDNRLS-----TLPELPA 120
Query: 251 SLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIF 310
SL +LDV NN L+ +P + L+ + NQ T + + L L
Sbjct: 121 SLKHLDVDNNQLT-MLPELPALLEYI---NADNNQLT-MLPELPTS-------LEVL--- 165
Query: 311 TFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLK----YIRLSNNK 366
S NQL+ LP +E++ ++ N + +P + + R N+
Sbjct: 166 --SVRNNQLTF-LPELPE---SLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENR 218
Query: 367 LSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI 426
++ IP + + I L+ N LS I + + T + +M G+
Sbjct: 219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277
Query: 427 GNLRSIQILKLNSN 440
L N
Sbjct: 278 RPLADAVTAWFPEN 291
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 95.0 bits (236), Expect = 2e-20
Identities = 53/289 (18%), Positives = 99/289 (34%), Gaps = 56/289 (19%)
Query: 317 NQLSGPLPSWLGKWNQMESVWL---NNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPR 373
N +SG + W++ E L N N+ + + + ++L+ LS S+P
Sbjct: 20 NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPD 76
Query: 374 ELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQ 433
L + + + N L ++ ++ LE LD N L+ +P+ +L+
Sbjct: 77 NL--PPQITVLEITQNALI-SLPELPA------SLEYLDACDNRLS-TLPELPASLKH-- 124
Query: 434 ILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRP 493
L +++N +P L + NN L +PE L+ L + N L+
Sbjct: 125 -LDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPT---SLEVLSVRNNQLTF- 174
Query: 494 ILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTG---------- 543
+P+L + D+S N+L +P
Sbjct: 175 -------------LPELP--ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENR 218
Query: 544 --YIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590
+IP ++ L + + L N LS + S + F
Sbjct: 219 ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 56/234 (23%), Positives = 88/234 (37%), Gaps = 37/234 (15%)
Query: 357 LKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSN 416
+ + L N++ L + L N + F L+ L L+L N
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF---NGLANLNTLELFDN 122
Query: 417 MLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRL-GDSTSLNILELGNNNLNGSIPEKI 474
LT IP L ++ L L +N SIP SL L+LG I E
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180
Query: 475 -ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKE 533
L+ L++L+L+ NL IP+L+ + DLS N LS
Sbjct: 181 FEGLSNLRYLNLAMCNLR--------------EIPNLTPLIKLDELDLSGNHLS------ 220
Query: 534 LGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
+ + L HL KL + +++ V+ +F NL L ++L++N
Sbjct: 221 ------AIRPGSFQGLMHLQ---KLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 1e-21
Identities = 58/290 (20%), Positives = 103/290 (35%), Gaps = 47/290 (16%)
Query: 154 RLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGF 213
+ + L +P G+ T L+L N + ++ L+ L S N
Sbjct: 44 QFSKVICVRKNLR-EVPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 214 NGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SH 272
L L L+L DN L+ ++ F L L L + NN + +IP +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNR 158
Query: 273 LKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQ 332
+ L L +LG K L+ + F G++ L
Sbjct: 159 IPSL--RRL-----------DLGELKR----LSYISEGAF-EGLSNL------------- 187
Query: 333 MESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRE-LNDSESLVEINLDGNML 391
+ L + IP + L + LS N LS +I L ++ + + +
Sbjct: 188 -RYLNLAMCN-LREIP-NLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQI 243
Query: 392 SGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSN 440
+ F NL L +++L+ N LT +P ++ L ++ + L+ N
Sbjct: 244 QVIERNAF---DNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 2e-20
Identities = 60/265 (22%), Positives = 99/265 (37%), Gaps = 43/265 (16%)
Query: 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFT 190
R+LNL +N + +L+ L++L L N + L L TL L N T
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125
Query: 191 GEMPSELGDMKQLKSLDFSGNGFNGTVPIRL-GELTRLQDLDLSD-NLLSGSLTVSLFTN 248
+ +LK L N ++P + L+ LDL + LS ++ F
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEG 183
Query: 249 LQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQ 308
L +L YL+++ L P ++ L KL + L N + +I+
Sbjct: 184 LSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLS-AIRPG--------------- 225
Query: 309 IFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKL 367
+F G+ L + +W+ +Q I I N L I L++N L
Sbjct: 226 --SFQ-GLMHL--------------QKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNL 267
Query: 368 SGSIPRELNDS-ESLVEINLDGNML 391
+ +P +L L I+L N
Sbjct: 268 T-LLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 6e-16
Identities = 39/163 (23%), Positives = 60/163 (36%), Gaps = 6/163 (3%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186
L+ L L L N L P+ L +LK L L N + + L L L
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169
Query: 187 -NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSL 245
+ + L+ L+ + +P L L +L +LDLS N LS ++
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS-AIRPGS 226
Query: 246 FTNLQSLSYLDVSNNLLSGNIPPE-ISHLKKLSDHYLGINQFT 287
F L L L + + + I +L+ L + L N T
Sbjct: 227 FQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT 268
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 3e-12
Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 37/194 (19%)
Query: 400 GRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNIL 459
C+ +Q K+ L +P I + ++L L+ N L IL
Sbjct: 37 SVCSCSNQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEIL 93
Query: 460 ELGNNNLNGSIPEKI-ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPD--LSYSHNY 516
+L N++ +I LA L L+L N L+ IP+ Y
Sbjct: 94 QLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT--------------TIPNGAFVYLSKL 138
Query: 517 RKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSG-NKLSVLVPTSFGN 575
++ L N + + Y + L +L+L +LS + +F
Sbjct: 139 KELWLRNNPIE------------SIPSYAFNRIPSL---RRLDLGELKRLSYISEGAFEG 183
Query: 576 LNGLTNLDLSYNEF 589
L+ L L+L+
Sbjct: 184 LSNLRYLNLAMCNL 197
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 4e-23
Identities = 55/260 (21%), Positives = 90/260 (34%), Gaps = 40/260 (15%)
Query: 331 NQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNM 390
NQ V +P + S +Y+ L N + L + L N
Sbjct: 54 NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110
Query: 391 LSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMR 449
+ F L+ L L+L N LT IP L ++ L L +N SIP
Sbjct: 111 IRQIEVGAF---NGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSY 165
Query: 450 -LGDSTSLNILELGNNNLNGSIPEKI-ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNI 507
SL L+LG I E L L++L+L N+ ++
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--------------DM 211
Query: 508 PDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSV 567
P+L+ + ++S N + L L KL + +++S+
Sbjct: 212 PNLTPLVGLEELEMSGNHFP------------EIRPGSFHGLSSL---KKLWVMNSQVSL 256
Query: 568 LVPTSFGNLNGLTNLDLSYN 587
+ +F L L L+L++N
Sbjct: 257 IERNAFDGLASLVELNLAHN 276
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 2e-21
Identities = 51/243 (20%), Positives = 93/243 (38%), Gaps = 22/243 (9%)
Query: 202 QLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNL 261
+ L+ N L L+ L L N + + V F L SL+ L++ +N
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134
Query: 262 LSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSE-LGNCKNFKSVLAELQIFTFSAGMNQL 319
L+ IP +L KL + +L N SI S + L L + + +L
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPS----LMRLDL----GELKKL 184
Query: 320 SGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRE-LNDS 378
++ + L I +P + L+ + +S N I +
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCN-IKDMP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGL 241
Query: 379 ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKL 437
SL ++ + + +S + F L+ L +L+L+ N L+ +P ++ LR + L L
Sbjct: 242 SSLKKLWVMNSQVSLIERNAF---DGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL 297
Query: 438 NSN 440
+ N
Sbjct: 298 HHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 4e-20
Identities = 57/264 (21%), Positives = 101/264 (38%), Gaps = 41/264 (15%)
Query: 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFT 190
R LNL +N + + +L L++L LG N + L L TL L N T
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136
Query: 191 GEMPSELGDMKQLKSLDFSGNGFNGTVPIR-LGELTRLQDLDLSDNLLSGSLTVSLFTNL 249
+ +L+ L N ++P + L LDL + ++ F L
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195
Query: 250 QSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQI 309
+L YL++ + ++ P ++ L L + + N F E++
Sbjct: 196 FNLKYLNLGMCNIK-DM-PNLTPLVGLEELEMSGNHFP------------------EIRP 235
Query: 310 FTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLS 368
+F G++ L + +W+ N+Q + I + L + L++N LS
Sbjct: 236 GSFH-GLSSL--------------KKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLS 279
Query: 369 GSIPRELNDS-ESLVEINLDGNML 391
S+P +L LVE++L N
Sbjct: 280 -SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 6e-20
Identities = 57/258 (22%), Positives = 91/258 (35%), Gaps = 39/258 (15%)
Query: 334 ESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRE-LNDSESLVEINLDGNML 391
+ L N I I + + L+ ++L N + I N SL + L N L
Sbjct: 78 RYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWL 135
Query: 392 SGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMR- 449
+ F LS+L +L L +N + IP + S+ L L I
Sbjct: 136 TVIPSGAF---EYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191
Query: 450 LGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPD 509
+L L LG N+ +P + L L+ L++S N+ + S
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPE--IRPGS---------- 237
Query: 510 LSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLV 569
+ +K + + +S I + L+ V+LNL+ N LS L
Sbjct: 238 FHGLSSLKKLWVMNSQVSL-IE--------------RNAFDGLASLVELNLAHNNLSSLP 282
Query: 570 PTSFGNLNGLTNLDLSYN 587
F L L L L +N
Sbjct: 283 HDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 5e-17
Identities = 57/294 (19%), Positives = 98/294 (33%), Gaps = 73/294 (24%)
Query: 202 QLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNL 261
Q + + G + VP + + + L+L +N + + F +L L L + N
Sbjct: 55 QFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110
Query: 262 LSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLS 320
+ I + L L+ L N L + F +++L
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNW------------------LTVIPSGAFE-YLSKL- 149
Query: 321 GPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRE-LNDS 378
+WL NN I IP L + L K I
Sbjct: 150 -------------RELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195
Query: 379 ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLN 438
+L +NL + + ++ T L LE+L++S N ++
Sbjct: 196 FNLKYLNLGMCNIK-DMPNL----TPLVGLEELEMSGN----------------HFPEIR 234
Query: 439 SNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEK-IADLAQLQFLDLSYNNLS 491
F+G +SL L + N+ ++ I LA L L+L++NNLS
Sbjct: 235 PGSFHGL--------SSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS 279
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 4e-16
Identities = 39/163 (23%), Positives = 56/163 (34%), Gaps = 6/163 (3%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL-C 185
L+ L L L N L PS L +L+ L L N + + L L L
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180
Query: 186 SNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSL 245
+ LK L+ +P L L L++L++S N +
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-EIRPGS 237
Query: 246 FTNLQSLSYLDVSNNLLSGNIPPE-ISHLKKLSDHYLGINQFT 287
F L SL L V N+ +S I L L + L N +
Sbjct: 238 FHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS 279
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 21/89 (23%), Positives = 31/89 (34%)
Query: 123 PLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETL 182
P L L L L +S N L LK L + +Q+S + L L L
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271
Query: 183 SLCSNSFTGEMPSELGDMKQLKSLDFSGN 211
+L N+ + ++ L L N
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 2e-22
Identities = 28/72 (38%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDC-KSHISTDVASAISYVPPEYGRARKANERDN 683
D+K+ NILL+E+F K+ DFG+++ ++ ++H+ST V + Y+ PEY + E+ +
Sbjct: 164 DVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSD 223
Query: 684 IYRFGVVLLELV 695
+Y FGVVL E++
Sbjct: 224 VYSFGVVLFEVL 235
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 9e-09
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK 624
N F K IG G FG V+KG + DG VA+K+
Sbjct: 39 NNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR 70
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 3e-22
Identities = 56/345 (16%), Positives = 118/345 (34%), Gaps = 60/345 (17%)
Query: 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFN 214
L+++ + L ++P + L L +N + + ++ L +L N +
Sbjct: 35 LRVVQCSDLGLK-AVPK--EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 215 GTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHL 273
L +LQ L +S N L + +L ++L L + +N + +P + S L
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLV---ELRIHDNRIR-KVPKGVFSGL 146
Query: 274 KKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQM 333
+ ++ +G N S + F G+ +
Sbjct: 147 RNMNCIEMGGNPLENS----------------GFEPGAFD-GLK---------------L 174
Query: 334 ESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRE-LNDSESLVEINLDGNMLS 392
+ ++ + + IP L + L +NK+ +I E L L + L N +
Sbjct: 175 NYLRISEAK-LTGIP--KDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR 230
Query: 393 GTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIP----- 447
+ L L +L L +N L+ R+P + +L+ +Q++ L++N +
Sbjct: 231 MIENGSL---SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFC 285
Query: 448 --MRLGDSTSLNILELGNNNL-NGSIPEKI-ADLAQLQFLDLSYN 488
N + L NN + + + +
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 4e-21
Identities = 72/294 (24%), Positives = 113/294 (38%), Gaps = 52/294 (17%)
Query: 202 QLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNL 261
L+ + S G VP + LDL +N +S L F LQ L L + NN
Sbjct: 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89
Query: 262 LSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLS 320
+S I + S L+KL Y+ N I L S L EL+I N++
Sbjct: 90 IS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL-----PSS-LVELRIHD-----NRIR 136
Query: 321 GPLPSWLGKWNQMESVWLNNNQFIGRIPLEVG--NCSMLKYIRLSNNKLSGSIPRELNDS 378
M + + N + E G + L Y+R+S KL+ IP++L
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--P 192
Query: 379 ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLN 438
E+L E++LD N + + S+L +L L N + +
Sbjct: 193 ETLNELHLDHNKIQAIELEDL---LRYSKLYRLGLGHNQIR----------------MIE 233
Query: 439 SNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSR 492
+ + +L L L NN L+ +P + DL LQ + L NN+++
Sbjct: 234 NGSLSFL--------PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 5e-21
Identities = 58/318 (18%), Positives = 104/318 (32%), Gaps = 51/318 (16%)
Query: 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFT 190
+L+L N + L+ L L L N++S L L+ L + N
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 191 GEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLL-SGSLTVSLFTNL 249
E+P L L L N L + +++ N L + F L
Sbjct: 116 -EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 250 QSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQ 308
L+YL +S L+ IP ++ L +L +L N+ ++
Sbjct: 173 -KLNYLRISEAKLT-GIPKDLPETLNEL---HLDHNKIQ------------------AIE 209
Query: 309 IFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKL 367
+ ++L + L +NQ I I L+ + L NNKL
Sbjct: 210 LEDLL-RYSKL--------------YRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKL 253
Query: 368 SGSIPRELNDSESLVEINLDGNMLSGTIEDVF---GRCTNLSQLEKLDLSSNMLT-GRIP 423
S +P L D + L + L N ++ + F G + + L +N + +
Sbjct: 254 S-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312
Query: 424 KEI-GNLRSIQILKLNSN 440
+ ++ +
Sbjct: 313 PATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 56/243 (23%), Positives = 99/243 (40%), Gaps = 31/243 (12%)
Query: 354 CSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDL 413
C L+ ++ S+ L ++P+E+ S ++L N +S +D F L L L L
Sbjct: 33 CH-LRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDF---KGLQHLYALVL 85
Query: 414 SSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEK 473
+N ++ K LR +Q L ++ N IP L +SL L + +N + +P+
Sbjct: 86 VNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIR-KVPKG 141
Query: 474 I-ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPK 532
+ + L + +++ N L + F + + L +S L+G IPK
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGA--FDGLKLNYL---------RISEAKLTG-IPK 189
Query: 533 ELGSCVVVLT------GYIPR-SLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLS 585
+L + L I L S +L L N++ ++ S L L L L
Sbjct: 190 DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249
Query: 586 YNE 588
N+
Sbjct: 250 NNK 252
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-18
Identities = 54/283 (19%), Positives = 96/283 (33%), Gaps = 52/283 (18%)
Query: 316 MNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRE 374
N +S + ++ L NN+ I +I + L+ + +S N L IP
Sbjct: 63 NNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPN 120
Query: 375 LNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLT-GRIPKEIGNLRSIQ 433
L SLVE+ + N + + VF + L + +++ N L + +
Sbjct: 121 L--PSSLVELRIHDNRIRKVPKGVF---SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175
Query: 434 ILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKI-ADLAQLQFLDLSYNNLSR 492
L+++ IP L +LN L L +N + +I + ++L L L +N +
Sbjct: 176 YLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR- 230
Query: 493 PILSKHSSYFHEVNIPDLSYS--HNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLG 550
I + S S R+ L N LS +P L
Sbjct: 231 -------------MIENGSLSFLPTLRELHLDNNKLS----------------RVPAGLP 261
Query: 551 HLSCSVKLNLSGNKLSVLVPTSFGNLNG------LTNLDLSYN 587
L + L N ++ + F + + L N
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 37/175 (21%), Positives = 63/175 (36%), Gaps = 15/175 (8%)
Query: 120 PVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQ-LGVLTW 178
P FD KL L +S+ L G P + L L L N++ ++ + L +
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTGIPK---DLPETLNELHLDHNKIQ-AIELEDLLRYSK 218
Query: 179 LETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLS 238
L L L N L + L+ L N + VP L +L LQ + L N ++
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
Query: 239 GSLTVSLFTNLQ------SLSYLDVSNNLLS-GNIPPEI-SHLKKLSDHYLGINQ 285
+ V+ F + + + + NN + + P + G +
Sbjct: 278 -KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 1e-21
Identities = 69/326 (21%), Positives = 121/326 (37%), Gaps = 33/326 (10%)
Query: 128 LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187
+ + + + R + L+ S+PS G+ +++L L +N
Sbjct: 6 WMVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLN-SIPS--GLTEAVKSLDLSNN 62
Query: 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRL-GELTRLQDLDLSDNLLSGSLTVSLF 246
T S+L L++L + NG N T+ L L+ LDLS N LS +L+ S F
Sbjct: 63 RITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWF 120
Query: 247 TNLQSLSYLDVSNNLLSGNIPPEI--SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVL 304
L SL++L++ N + SHL KL +G IQ + F L
Sbjct: 121 KPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-----FAG-L 173
Query: 305 AELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLS 363
L+ + L P L + + L+ Q + S ++ + L
Sbjct: 174 TFLEELEID--ASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELR 230
Query: 364 NNKLSG----SIPRELNDS----ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSS 415
+ L + +S + + + L + + +S L +L+ S
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLL---NQISGLLELEFSR 286
Query: 416 NMLTGRIPKEI-GNLRSIQILKLNSN 440
N L +P I L S+Q + L++N
Sbjct: 287 NQLKS-VPDGIFDRLTSLQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 3e-21
Identities = 55/269 (20%), Positives = 103/269 (38%), Gaps = 13/269 (4%)
Query: 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQL-GVLTWLETLSLCSN 187
++ L+LS N + + + L+ L L N ++ ++ L LE L L N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110
Query: 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRL-GELTRLQDLDLSDNLLSGSLTVSLF 246
+ S + L L+ GN + L LT+LQ L + + + F
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 247 TNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNF--KSV 303
L L L++ + L + P+ ++ +S L + Q + + +
Sbjct: 171 AGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLE 228
Query: 304 LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLS 363
L + + TF ++LS + L K +V + + + ++ + S L + S
Sbjct: 229 LRDTDLDTFH--FSELSTGETNSLIKKFTFRNVKITDES-LFQVMKLLNQISGLLELEFS 285
Query: 364 NNKLSGSIPRELNDS-ESLVEINLDGNML 391
N+L S+P + D SL +I L N
Sbjct: 286 RNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 4e-17
Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 41/276 (14%)
Query: 337 WLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDS-ESLVEINLDGNMLSGT 394
L+NN+ I I C L+ + L++N ++ +I + S SL ++L N LS
Sbjct: 58 DLSNNR-ITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNL 115
Query: 395 IEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDS 453
F LS L L+L N + +L +QIL++ + I +
Sbjct: 116 SSSWF---KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 454 -TSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSY 512
T L LE+ ++L P+ + + + L L + ++
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL--------------LLEIFV 218
Query: 513 S--HNYRKFDLSYNMLSGPIPKELGSCV------------VVLTG----YIPRSLGHLSC 554
+ +L L EL + V +T + + L +S
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278
Query: 555 SVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590
++L S N+L + F L L + L N +D
Sbjct: 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 8e-15
Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 58/240 (24%)
Query: 357 LKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSN 416
+K + LSNN+++ +L +L + L N ++ ED F ++L LE LDLS N
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF---SSLGSLEHLDLSYN 110
Query: 417 MLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRL-GDSTSLNILELGNNNLNGSIPEKI 474
L+ + L S+ L L N + L T L IL +GN + I K
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169
Query: 475 -ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKE 533
A L L+ L++ ++L
Sbjct: 170 FAGLTFLEELEIDASDLQS-------------------------------------YE-- 190
Query: 534 LGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGNN 593
P+SL + L L + +L+ + + L+L + D +
Sbjct: 191 ------------PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 7e-08
Identities = 23/149 (15%), Positives = 40/149 (26%), Gaps = 35/149 (23%)
Query: 121 VSPLLFD-LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---- 175
P + + L L V ++ L L + L S+L
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248
Query: 176 ----LTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLD 231
+ + S V L +++ L +L+
Sbjct: 249 SLIKKFTFRNVKITDESLF-------------------------QVMKLLNQISGLLELE 283
Query: 232 LSDNLLSGSLTVSLFTNLQSLSYLDVSNN 260
S N L S+ +F L SL + + N
Sbjct: 284 FSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-21
Identities = 56/291 (19%), Positives = 94/291 (32%), Gaps = 52/291 (17%)
Query: 158 LSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTV 217
+ L+ S+P+ G+ + L L SN + QL L S NG +
Sbjct: 12 IRCNSKGLT-SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FK 67
Query: 218 PIRLGE---LTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHL 273
T L+ LDLS N + +++ S F L+ L +LD ++ L + L
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVI-TMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 274 KKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQM 333
+ L + F G++ L
Sbjct: 126 RNLIYLDISHTH------------------TRVAFNGIF-NGLSSL-------------- 152
Query: 334 ESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRE-LNDSESLVEINLDGNML 391
E + + N F ++ L ++ LS +L + N SL +N+ N
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNF 211
Query: 392 SGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI--GNLRSIQILKLNSN 440
+ L+ L+ LD S N + K+ S+ L L N
Sbjct: 212 FSLDTFPY---KCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 5e-21
Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 18/244 (7%)
Query: 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN--SFTGEMPSELGDMKQLKSLDFSGNG 212
L L N+L LT L LSL SN SF G LK LD S NG
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 213 FNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-S 271
T+ L +L+ LD + L S+F +L++L YLD+S+ I +
Sbjct: 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFN 147
Query: 272 HLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWN 331
L L + N F + ++ F L L S QL P+ +
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDI-----FTE-LRNLTFLDLS--QCQLEQLSPTAFNSLS 199
Query: 332 QMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPREL--NDSESLVEINLDG 388
++ + +++N + + L+ + S N + + ++ + SL +NL
Sbjct: 200 SLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQ 257
Query: 389 NMLS 392
N +
Sbjct: 258 NDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 9e-21
Identities = 46/233 (19%), Positives = 74/233 (31%), Gaps = 31/233 (13%)
Query: 357 LKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSN 416
+ L +NKL + L +++L N LS + L+ LDLS N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDLSFN 88
Query: 417 MLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRL-GDSTSLNILELGNNNLNGSIPEKI- 474
+ + L ++ L + + +L L++ + + I
Sbjct: 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIF 146
Query: 475 ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKEL 534
L+ L+ L ++ N+ L + N DLS L
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDI-----------FTELRNLTFLDLSQCQLE------- 188
Query: 535 GSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
L+ SL L LN+S N L + LN L LD S N
Sbjct: 189 -----QLSPTAFNSLSSLQ---VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 5e-19
Identities = 53/262 (20%), Positives = 96/262 (36%), Gaps = 42/262 (16%)
Query: 337 WLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLS--GSIPRELNDSESLVEINLDGNMLSG 393
L +N+ + +P V + L + LS+N LS G + + SL ++L N +
Sbjct: 34 ELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 91
Query: 394 TIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGD 452
T+ F L QLE LD + L + +LR++ L ++ +
Sbjct: 92 TMSSNF---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 453 STSLNILELGNNNLNGSIPEKI-ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPD-- 509
+SL +L++ N+ + I +L L FLDLS L +
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--------------QLSPTA 194
Query: 510 LSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLV 569
+ + + ++S+N L + + L L L+ S N +
Sbjct: 195 FNSLSSLQVLNMSHNNFF------------SLDTFPYKCLNSLQ---VLDYSLNHIMTSK 239
Query: 570 PTSFGNLNG-LTNLDLSYNEFD 590
+ L L+L+ N+F
Sbjct: 240 KQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 6e-18
Identities = 58/292 (19%), Positives = 96/292 (32%), Gaps = 69/292 (23%)
Query: 204 KSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263
+ + G +VP + + L+L N L SL +F L L+ L +S+N
Sbjct: 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSN--- 62
Query: 264 GNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPL 323
LS G L+ S N + +
Sbjct: 63 -----------GLSFKGCCSQSDFG---------------TTSLKYLDLSF--NGVIT-M 93
Query: 324 PSWLGKWNQMESVWLNNNQFIGRIPLEVG---NCSMLKYIRLSNNKLSGSIPRELNDSES 380
S Q+E + ++ + ++ E + L Y+ +S+ + N S
Sbjct: 94 SSNFLGLEQLEHLDFQHSN-LKQMS-EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 381 LVEINLDGN-MLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNS 439
L + + GN + D+F T L L LDLS Q+ +L+
Sbjct: 152 LEVLKMAGNSFQENFLPDIF---TELRNLTFLDLSQC----------------QLEQLSP 192
Query: 440 NFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491
FN +SL +L + +NN L LQ LD S N++
Sbjct: 193 TAFNSL--------SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 6e-16
Identities = 42/176 (23%), Positives = 64/176 (36%), Gaps = 8/176 (4%)
Query: 116 SLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQ--L 173
S KG S F + L+ L+LS N + S L++L+ L + L +
Sbjct: 65 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLK-QMSEFSVF 122
Query: 174 GVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIR-LGELTRLQDLDL 232
L L L + + L+ L +GN F EL L LDL
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182
Query: 233 SDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFT 287
S L L+ + F +L SL L++S+N ++ L L +N
Sbjct: 183 SQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 52/242 (21%), Positives = 84/242 (34%), Gaps = 65/242 (26%)
Query: 354 CSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDL 413
CS IR ++ L+ S+P + S + L+ N L VF L+QL KL L
Sbjct: 7 CS-GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVF---DKLTQLTKLSL 59
Query: 414 SSNMLTGR--IPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIP 471
SSN L+ + + S++ L L+ N ++ L L+ ++NL +
Sbjct: 60 SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMS 117
Query: 472 EKIA--DLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGP 529
E L L +LD+S+ + + + +G
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTR--------------VAFN--------------GIFNG- 148
Query: 530 IPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNK-LSVLVPTSFGNLNGLTNLDLSYNE 588
L L L ++GN +P F L LT LDLS +
Sbjct: 149 -------------------LSSL---EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 589 FD 590
+
Sbjct: 187 LE 188
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 124 LLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183
+ +L L L+LSQ L ++L L++L++ N L L+ L
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229
Query: 184 LCSNSFTGEMPSELGDM-KQLKSLDFSGN 211
N EL L L+ + N
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 4e-20
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLI-SDCKSHISTDVASAISYVPPEYGRARKANERDN 683
DIK++NILL+E F AK+ DFGLAR ++ +++ + +Y+ PE R + + +
Sbjct: 158 DIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSD 216
Query: 684 IYRFGVVLLELVIRKQPTGPKFEDKDIV 711
IY FGVVLLE++ E + ++
Sbjct: 217 IYSFGVVLLEIITGLPAVDEHREPQLLL 244
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 587 NEFDGNNKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK 624
N FD N +G GGFG V+KG + + TVAVKK
Sbjct: 25 NNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKK 61
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 4e-20
Identities = 56/319 (17%), Positives = 114/319 (35%), Gaps = 57/319 (17%)
Query: 173 LGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDL 232
L ++ ++ T D+ + +L G G + L L L+L
Sbjct: 15 DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLEL 70
Query: 233 SDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQS 292
DN ++ ++ NL ++ L++S N L N+ I+ L+ + L Q T +
Sbjct: 71 KDNQIT---DLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITD--VT 123
Query: 293 ELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVG 352
L N ++ ++L+ NQ I I +
Sbjct: 124 PLAGLSN---------------------------------LQVLYLDLNQ-ITNIS-PLA 148
Query: 353 NCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLD 412
+ L+Y+ + N ++S P L + L + D N +S I + +L L ++
Sbjct: 149 GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DISPL----ASLPNLIEVH 201
Query: 413 LSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPE 472
L +N ++ + N ++ I+ L + + N+++ + P
Sbjct: 202 LKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK--GPSGAPIAPA 257
Query: 473 KIADLAQLQFLDLSYNNLS 491
I+D +L++N S
Sbjct: 258 TISDNGTYASPNLTWNLTS 276
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 62/291 (21%), Positives = 113/291 (38%), Gaps = 55/291 (18%)
Query: 150 SNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209
L ++ G++ ++ L + TLS T + + L L+
Sbjct: 16 PALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT--TIEGVQYLNNLIGLELK 71
Query: 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPE 269
N P L LT++ +L+LS N L VS LQS+ LD+++ ++ ++ P
Sbjct: 72 DNQITDLAP--LKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQIT-DVTP- 124
Query: 270 ISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGK 329
++ L L YL +NQ T +I S L N
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NI-SPLAGLTN------------------------------ 152
Query: 330 WNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGN 389
++ + + N Q + + + N S L ++ +NK+S I L +L+E++L N
Sbjct: 153 ---LQYLSIGNAQ-VSDLT-PLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNN 205
Query: 390 MLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSN 440
+S + + N S L + L++ +T + NL ++K S
Sbjct: 206 QIS-DVSPL----ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 5e-17
Identities = 63/302 (20%), Positives = 112/302 (37%), Gaps = 32/302 (10%)
Query: 95 NALKDLEEL--LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNL 152
A+ + L + ++ V+ DL + L+ + V L
Sbjct: 7 TAINVIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV--TTIEGVQYL 62
Query: 153 KRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNG 212
L L L +NQ++ + L LT + L L N S + ++ +K+LD +
Sbjct: 63 NNLIGLELKDNQITD--LAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQ 118
Query: 213 FNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISH 272
P L L+ LQ L L N ++ +S L +L YL + N +S ++ P +++
Sbjct: 119 ITDVTP--LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVS-DLTP-LAN 171
Query: 273 LKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQ 332
L KL+ N+ + I S L + N L NQ+S P L +
Sbjct: 172 LSKLTTLKADDNKIS-DI-SPLASLPN-------LIEVHLKN--NQISDVSP--LANTSN 218
Query: 333 MESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLS 392
+ V L N + N + ++ + P ++D+ + NL N+ S
Sbjct: 219 LFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP--IAPATISDNGTYASPNLTWNLTS 276
Query: 393 GT 394
Sbjct: 277 FI 278
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 52/304 (17%), Positives = 109/304 (35%), Gaps = 34/304 (11%)
Query: 221 LGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHY 280
L + + ++ +L ++ L ++ I + +L L
Sbjct: 15 DPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLE 69
Query: 281 LGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNN 340
L NQ T + + L N + EL N L + ++++ L +
Sbjct: 70 LKDNQIT-DL-APLKNLTK----ITEL-----ELSGNPLKNVSA--IAGLQSIKTLDLTS 116
Query: 341 NQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFG 400
Q PL S L+ + L N+++ +I L +L +++ +S + +
Sbjct: 117 TQITDVTPLA--GLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVS-DLTPL-- 169
Query: 401 RCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILE 460
NLS+L L N ++ I + +L ++ + L +N + P L ++++L I+
Sbjct: 170 --ANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223
Query: 461 LGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFD 520
L N + L ++ PI S P+L+++ +
Sbjct: 224 LTNQTITNQPVFY---NNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280
Query: 521 LSYN 524
+SY
Sbjct: 281 VSYT 284
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 5e-15
Identities = 43/256 (16%), Positives = 91/256 (35%), Gaps = 48/256 (18%)
Query: 332 QMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNML 391
+ + + + + + ++ +I + +L+ + L N +
Sbjct: 20 NAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI 75
Query: 392 SGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLG 451
+ + + NL+++ +L+LS N L I L+SI+ L L S P L
Sbjct: 76 T-DLAPL----KNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LA 126
Query: 452 DSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLS 511
++L +L L N + +I +A L LQ+L + +S ++ L+
Sbjct: 127 GLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS--------------DLTPLA 170
Query: 512 YSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPT 571
N +S P L L ++++L N++S + +
Sbjct: 171 NLSKLTTLKADDNKISDISP-----------------LASLPNLIEVHLKNNQISDV--S 211
Query: 572 SFGNLNGLTNLDLSYN 587
N + L + L+
Sbjct: 212 PLANTSNLFIVTLTNQ 227
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 48/266 (18%)
Query: 317 NQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELN 376
+ ++ + + + ++ + I V + L + L +N+++ + L
Sbjct: 29 SNVTDTVT--QADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQIT-DLA-PLK 82
Query: 377 DSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILK 436
+ + E+ L GN L + + L ++ LDL+S +T P + L ++Q+L
Sbjct: 83 NLTKITELELSGNPLK-NVSAI----AGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 135
Query: 437 LNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILS 496
L+ N P L T+L L +GN ++ P +A+L++L L N +S
Sbjct: 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS----- 186
Query: 497 KHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSV 556
+I L+ N + L N +S P L + S
Sbjct: 187 ---------DISPLASLPNLIEVHLKNNQISDVSP-----------------LANTSNLF 220
Query: 557 KLNLSGNKLSVLVPTSFGNLNGLTNL 582
+ L+ ++ NL +
Sbjct: 221 IVTLTNQTITNQPVFYNNNLVVPNVV 246
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 46/232 (19%)
Query: 357 LKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSN 416
I + ++ ++ D + + ++ G ++ TIE V L+ L L+L N
Sbjct: 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGV----QYLNNLIGLELKDN 73
Query: 417 MLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIAD 476
+T + + NL I L+L+ N + S+ L+L + + P +A
Sbjct: 74 QIT-DLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAG 127
Query: 477 LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGS 536
L+ LQ L L N ++ NI L+ N + + +S P
Sbjct: 128 LSNLQVLYLDLNQIT--------------NISPLAGLTNLQYLSIGNAQVSDLTP----- 168
Query: 537 CVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNE 588
L +LS L NK+S + P +L L + L N+
Sbjct: 169 ------------LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 30/201 (14%)
Query: 394 TIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS 453
I +F L+ K+ + +T + +L I L +I +
Sbjct: 8 AINVIFP-DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYL 62
Query: 454 TSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYS 513
+L LEL +N + + + +L ++ L+LS N L N+ ++
Sbjct: 63 NNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLK--------------NVSAIAGL 106
Query: 514 HNYRKFDLSYNMLSGPIPKELGSCVVVLT------GYIPRSLGHLSCSVKLNLSGNKLSV 567
+ + DL+ ++ P S + VL I L L+ L++ ++S
Sbjct: 107 QSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSD 165
Query: 568 LVPTSFGNLNGLTNLDLSYNE 588
L T NL+ LT L N+
Sbjct: 166 L--TPLANLSKLTTLKADDNK 184
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 4e-19
Identities = 50/236 (21%), Positives = 83/236 (35%), Gaps = 39/236 (16%)
Query: 357 LKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSN 416
+ I L N++S +L + L N+L+ F T L+ LE+LDLS N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF---TGLALLEQLDLSDN 90
Query: 417 MLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMR-LGDSTSLNILELGNNNLNGSIPEKI 474
+ L + L L+ + +L L L +N L ++P+
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148
Query: 475 -ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSH--NYRKFDLSYNMLSGPIP 531
DL L L L N +S ++P+ ++ + + L N ++ +
Sbjct: 149 FRDLGNLTHLFLHGNRIS--------------SVPERAFRGLHSLDRLLLHQNRVAH-VH 193
Query: 532 KELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
P + L + L L N LS L + L L L L+ N
Sbjct: 194 --------------PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 4e-19
Identities = 52/230 (22%), Positives = 78/230 (33%), Gaps = 42/230 (18%)
Query: 363 SNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRI 422
L ++P + + I L GN +S F L L L SN+L RI
Sbjct: 19 PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASF---RACRNLTILWLHSNVLA-RI 71
Query: 423 PKEI-GNLRSIQILKLNSNFFNGSIPMR-LGDSTSLNILELGNNNLNGSIPEKI-ADLAQ 479
L ++ L L+ N S+ L+ L L L + + LA
Sbjct: 72 DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAA 130
Query: 480 LQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSH--NYRKFDLSYNMLSGPIPKELGSC 537
LQ+L L N L +PD ++ N L N +S
Sbjct: 131 LQYLYLQDNALQ--------------ALPDDTFRDLGNLTHLFLHGNRIS---------- 166
Query: 538 VVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
+ R L L +L L N+++ + P +F +L L L L N
Sbjct: 167 --SVPERAFRGLHSL---DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 6e-18
Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 17/225 (7%)
Query: 168 SLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRL 227
++P G+ + + L N + + + L L N L L
Sbjct: 25 AVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 228 QDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQF 286
+ LDLSDN S+ + F L L L + L + P + L L YL N
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141
Query: 287 TGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGR 346
++ + F+ L L N++S + ++ + L+ N+ +
Sbjct: 142 Q-ALPDDT-----FRD-LGNLTHLFLHG--NRISSVPERAFRGLHSLDRLLLHQNR-VAH 191
Query: 347 IPLEV-GNCSMLKYIRLSNNKLSGSIPRE-LNDSESLVEINLDGN 389
+ + L + L N LS ++P E L +L + L+ N
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 44/171 (25%), Positives = 62/171 (36%), Gaps = 9/171 (5%)
Query: 121 VSPLLFD-LSKLRVLNLSQNLLFGQPSPQV-SNLKRLKMLSLGENQLSGSLPSQ-LGVLT 177
+ F L+ L L+LS N P L RL L L L L L
Sbjct: 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129
Query: 178 WLETLSLCSNSFTGEMPSE-LGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNL 236
L+ L L N+ +P + D+ L L GN + L L L L N
Sbjct: 130 ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188
Query: 237 LSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQF 286
++ + F +L L L + N LS +P E + L+ L L N +
Sbjct: 189 VA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 5e-11
Identities = 43/190 (22%), Positives = 61/190 (32%), Gaps = 32/190 (16%)
Query: 401 RCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILE 460
C N ++ L +P I + Q + L+ N + +L IL
Sbjct: 7 VCYNEPKVT-TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILW 62
Query: 461 LGNNNLNGSIPEKI-ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKF 519
L +N L I LA L+ LDLS N R + + FH + L
Sbjct: 63 LHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSV---DPATFH--GLGRL------HTL 110
Query: 520 DLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGL 579
L L + P L+ L L N L L +F +L L
Sbjct: 111 HLDRCGLQE-LG--------------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155
Query: 580 TNLDLSYNEF 589
T+L L N
Sbjct: 156 THLFLHGNRI 165
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 90.2 bits (223), Expect = 7e-19
Identities = 50/312 (16%), Positives = 105/312 (33%), Gaps = 29/312 (9%)
Query: 195 SELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSY 254
+ + V EL + + +++ + +V L +++
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTK 69
Query: 255 LDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSA 314
L ++ N L+ +I P +++LK L +L N+ + S L + K L L +
Sbjct: 70 LFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIK-DL-SSLKDLKK----LKSLSL----- 116
Query: 315 GMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRE 374
N +S + L Q+ES++L NN+ L + L + L +N++S I
Sbjct: 117 EHNGIS--DINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIV-P 170
Query: 375 LNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQI 434
L L + L N +S + + L L+ L+L S + NL
Sbjct: 171 LAGLTKLQNLYLSKNHIS-DLRAL----AGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225
Query: 435 LKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPI 494
+K + ++ + + ++
Sbjct: 226 VKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQP 285
Query: 495 LSKHSSYFHEVN 506
L + + ++V+
Sbjct: 286 LKEVYTVSYDVD 297
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 85.2 bits (210), Expect = 2e-17
Identities = 49/298 (16%), Positives = 106/298 (35%), Gaps = 28/298 (9%)
Query: 91 LAIANALKDLEEL--LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQ 148
+ ++ +K + + L+ +S+ V+ +L+ + + + + + +
Sbjct: 5 ITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI--KSVQG 60
Query: 149 VSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDF 208
+ L + L L N+L+ L L L L L N S L D+K+LKSL
Sbjct: 61 IQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSL 116
Query: 209 SGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPP 268
NG + L L +L+ L L +N ++ +++ + L L L + +N +S +I P
Sbjct: 117 EHNGISDING--LVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQIS-DIVP 170
Query: 269 EISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLG 328
++ L KL + YL N + + L KN + +
Sbjct: 171 -LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLD---------VLELFSQECLNKPINHQS 218
Query: 329 KWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINL 386
+V + + + ++ + + + ++ +
Sbjct: 219 NLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 276
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 79.0 bits (194), Expect = 2e-15
Identities = 54/416 (12%), Positives = 127/416 (30%), Gaps = 34/416 (8%)
Query: 227 LQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQF 286
+ + + + ++ ++ + + L + +
Sbjct: 1 MGETITVSTPIK---QIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI 55
Query: 287 TGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGR 346
S+ + N + + N+L+ P L + ++L+ N+ I
Sbjct: 56 K-SV-QGIQYLPN-------VTKLFLNG--NKLTDIKP--LTNLKNLGWLFLDENK-IKD 101
Query: 347 I-PLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNL 405
+ L+ + LK + L +N +S I L L + L N ++ I + + L
Sbjct: 102 LSSLK--DLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT-DITVL----SRL 152
Query: 406 SQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNN 465
++L+ L L N ++ I + L +Q L L+ N + + L +L++LEL +
Sbjct: 153 TKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQE 208
Query: 466 LNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNM 525
++L + + +L P + + + N+ + Y
Sbjct: 209 CLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQP 268
Query: 526 LSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLS 585
++ K V ++ + + + + G
Sbjct: 269 VTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYV-FKGW 327
Query: 586 YNEFDGNNKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKKDIKASNILLNEDFDAKV 641
Y E +G +++ G T++ + V I N
Sbjct: 328 YTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEKTVNLTRYVKYIRGNAGIYKLP 383
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 86.1 bits (213), Expect = 1e-18
Identities = 47/279 (16%), Positives = 85/279 (30%), Gaps = 36/279 (12%)
Query: 319 LSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDS 378
S P P W +N + + + L G S+ ++ + + ++ S
Sbjct: 17 FSDPKPDWSSAFNCLGAA---------DVELYGGGRSLEYLLKRVDTEADLGQFTDIIKS 67
Query: 379 ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLN 438
SL + + + I R +S L++L L + +TG P + + LN
Sbjct: 68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN 127
Query: 439 -SNFFNGSIPMRLGD-----STSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSR 492
N + L + L +L + + E++ L LDLS N
Sbjct: 128 LRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187
Query: 493 PILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHL 552
+ + P L + L + +G
Sbjct: 188 ERGLISA--LCPLKFPTL------QVLALRNAGME------------TPSGVCSALAAAR 227
Query: 553 SCSVKLNLSGNKLSVLVP-TSFGNLNGLTNLDLSYNEFD 590
L+LS N L S + L +L+LS+
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 1e-17
Identities = 51/300 (17%), Positives = 82/300 (27%), Gaps = 37/300 (12%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186
S +L + LK L++ ++ +
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA------------- 88
Query: 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELT--RLQDLDLSDNLLSG---SL 241
+ + L+ L GT P L E T L L+L + + L
Sbjct: 89 --------LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWL 140
Query: 242 TVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFK 301
L L ++ ++ LS L N G C
Sbjct: 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200
Query: 302 SVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYI 360
L L + +AGM SG + Q++ + L++N S L +
Sbjct: 201 PTLQVLAL--RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258
Query: 361 RLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTG 420
LS L +P+ L L ++L N L L Q+ L L N
Sbjct: 259 NLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-----NPSPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 4e-17
Identities = 54/265 (20%), Positives = 88/265 (33%), Gaps = 44/265 (16%)
Query: 338 LNNNQFIGRIP---LEVGNCSMLKYIRLSNNKLSGSIPREL--NDSESLVEINLDGNMLS 392
+ + RI L V S L+ + L N +++G+ P L L +NL +
Sbjct: 75 VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134
Query: 393 GTIEDVFGRCTNLSQ-LEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMR-- 449
+ L L+ L ++ +++ ++ L L+ N G +
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194
Query: 450 --LGDSTSLNILELGNNNLN---GSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHE 504
+L +L L N + G A QLQ LDLS+N+L
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA---------- 244
Query: 505 VNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNK 564
P + +LS+ L + +P L L+LS N+
Sbjct: 245 -GAPSCDWPSQLNSLNLSFTGLKQ------------VPKGLPAKL------SVLDLSYNR 285
Query: 565 LSVLVPTSFGNLNGLTNLDLSYNEF 589
L S L + NL L N F
Sbjct: 286 LDRN--PSPDELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 8e-17
Identities = 52/356 (14%), Positives = 92/356 (25%), Gaps = 77/356 (21%)
Query: 181 TLSLCSNSFTGEMPSELGDMKQ-LKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSG 239
+ C + E+ ++ LK +D + + + L+ L + +
Sbjct: 26 SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQ---FTDIIKSLSLKRLTVRAARIPS 82
Query: 240 SLTVSL--FTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNC 297
+ + L L + N ++G PP + + L + + +
Sbjct: 83 RILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-------- 134
Query: 298 KNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSML 357
+ L WL ++ + + + +V L
Sbjct: 135 -----------------TRDAWLAELQQWLKP--GLKVLSIAQAHSLNFSCEQVRVFPAL 175
Query: 358 KYIRLSNNKLSGSIPRE----LNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDL 413
+ LS+N G +L + L + QL+ LDL
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235
Query: 414 SSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEK 473
S N L + LN L L L +P+
Sbjct: 236 SHNSLRDAAG-----------------------APSCDWPSQLNSLNLSFTGLK-QVPKG 271
Query: 474 IADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGP 529
+ A+L LDLSYN L R P L N
Sbjct: 272 L--PAKLSVLDLSYNRLDR--------------NPSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 9e-16
Identities = 39/170 (22%), Positives = 55/170 (32%), Gaps = 13/170 (7%)
Query: 119 GPVSPLLFDLSKLRVLNLSQNLLFGQPSP----QVSNLKRLKMLSLGENQLSGSLPSQLG 174
P L L +LNL + + Q LK+LS+ + Q+
Sbjct: 111 APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170
Query: 175 VLTWLETLSLCSNSFTGEMPSE----LGDMKQLKSLDFSGNGFN---GTVPIRLGELTRL 227
V L TL L N GE L+ L G G +L
Sbjct: 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230
Query: 228 QDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKL 276
Q LDLS N L + L+ L++S L +P + + L L
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLPAKLSVL 279
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 7e-07
Identities = 28/120 (23%), Positives = 41/120 (34%), Gaps = 10/120 (8%)
Query: 95 NALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQV-SNLK 153
L+ L LR ++ G S L +L+ L+LS N L
Sbjct: 198 LKFPTLQVLALRN----AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253
Query: 154 RLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGF 213
+L L+L L +P L L L L N ++ Q+ +L GN F
Sbjct: 254 QLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 27/201 (13%), Positives = 52/201 (25%), Gaps = 29/201 (14%)
Query: 404 NLSQLEKLDLSSNMLTGRIP-KEIGNLRSIQILKLNSNFFNGSIP---MRLGDSTSLNIL 459
LE L + +I S++ L + + I +R+ + L L
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 460 ELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKF 519
L N + G+ P + + L+ N+S + + P L +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL------KVL 154
Query: 520 DLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVP----TSFGN 575
++ + + L+LS N
Sbjct: 155 SIAQA---------------HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199
Query: 576 LNGLTNLDLSYNEFDGNNKFC 596
L L L + + C
Sbjct: 200 FPTLQVLALRNAGMETPSGVC 220
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-17
Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 8/162 (4%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186
++ L + L+ + + +K L++ + + + L+ LE L +
Sbjct: 42 QMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMG 97
Query: 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLF 246
T + L + L LD S + + ++ ++ L ++ +DLS N +
Sbjct: 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPL 155
Query: 247 TNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTG 288
L L L++ + + + I KL+ Y G
Sbjct: 156 KTLPELKSLNIQFDGVH-DYRG-IEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 4e-14
Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184
+ LS L L + + P +S L L +L + + S+ +++ L + ++ L
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSG 239
N + L + +LKSL+ +G + + + +L L + G
Sbjct: 144 SYNGAITD-IMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 4e-14
Identities = 19/172 (11%), Positives = 60/172 (34%), Gaps = 17/172 (9%)
Query: 198 GDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDV 257
M L + + + ++DL +++ + + + L +L L +
Sbjct: 41 AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRI 95
Query: 258 SNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMN 317
++ + P +S L L+ + + SI +++ + + + +
Sbjct: 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK----VNSIDL----SYNG 147
Query: 318 QLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG 369
++ +P L +++S+ + + +E + L + + + G
Sbjct: 148 AITDIMP--LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 6e-14
Identities = 32/193 (16%), Positives = 71/193 (36%), Gaps = 20/193 (10%)
Query: 150 SNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209
S K LG++ + +Q + L ++L + + T + + +K L +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQ---MNSLTYITLANINVTDL--TGIEYAHNIKDLTIN 74
Query: 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPE 269
P + L+ L+ L + ++ S + + L SL+ LD+S++ +I +
Sbjct: 75 NIHATNYNP--ISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDDSILTK 131
Query: 270 ISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGK 329
I+ L K++ L N I L L L I + + +
Sbjct: 132 INTLPKVNSIDLSYNGAITDI-MPLKTLPE----LKSLNI-----QFDGVHDYRG--IED 179
Query: 330 WNQMESVWLNNNQ 342
+ ++ ++ +
Sbjct: 180 FPKLNQLYAFSQT 192
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 7e-12
Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 17/193 (8%)
Query: 201 KQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNN 260
K+ G + T I ++ L + L++ ++ ++ ++ L ++N
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNI 76
Query: 261 LLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLS 320
+ N P IS L L + T L + L L I +
Sbjct: 77 HAT-NYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTS----LTLLDI-----SHSAHD 125
Query: 321 GPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSES 380
+ + + ++ S+ L+ N I I + LK + + + + + D
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPK 182
Query: 381 LVEINLDGNMLSG 393
L ++ + G
Sbjct: 183 LNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 1e-10
Identities = 27/186 (14%), Positives = 56/186 (30%), Gaps = 34/186 (18%)
Query: 403 TNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELG 462
++ L + L++ +T I +I+ L +N+ P + ++L L +
Sbjct: 41 AQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96
Query: 463 NNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLS 522
++ ++ L L LD+S++ + + ++ DLS
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHD------------DSILTKINTLPKVNSIDLS 144
Query: 523 YNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNL 582
YN I L L LN+ + + + L L
Sbjct: 145 YNGAITDIM----------------PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQL 186
Query: 583 DLSYNE 588
Sbjct: 187 YAFSQT 192
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 21/170 (12%)
Query: 358 KYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNM 417
Y+ + S + SL I L ++ + + ++ L +++
Sbjct: 24 AYLNGLLGQSSTA-NITEAQMNSLTYITLANINVT-DLTGI----EYAHNIKDLTINNIH 77
Query: 418 LTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADL 477
T I L +++ L++ L TSL +L++ ++ + SI KI L
Sbjct: 78 ATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135
Query: 478 AQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLS 527
++ +DLSYN +I L + ++ ++ +
Sbjct: 136 PKVNSIDLSYNGAIT-------------DIMPLKTLPELKSLNIQFDGVH 172
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 6e-10
Identities = 22/194 (11%), Positives = 64/194 (32%), Gaps = 22/194 (11%)
Query: 247 TNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAE 306
+ ++ + + + +++ L ++ + + TG + N
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHN------- 67
Query: 307 LQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNK 366
++ T + + P + + +E + + + + L + +S++
Sbjct: 68 IKDLTINN--IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123
Query: 367 LSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI 426
SI ++N + I+L N I + L +L+ L++ + + I
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPL----KTLPELKSLNIQFDGVHDYRG--I 177
Query: 427 GNLRSIQILKLNSN 440
+ + L S
Sbjct: 178 EDFPKLNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-09
Identities = 29/196 (14%), Positives = 71/196 (36%), Gaps = 22/196 (11%)
Query: 273 LKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQ 332
K + LG + ++++ + L + + + + L+G + +
Sbjct: 22 FKAYLNGLLGQSSTANITEAQMNS-------LTYITLA--NINVTDLTG-----IEYAHN 67
Query: 333 MESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLS 392
++ + +NN P+ S L+ +R+ ++ L+ SL +++ +
Sbjct: 68 IKDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125
Query: 393 GTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGD 452
+I L ++ +DLS N I + L ++ L + + + + D
Sbjct: 126 DSILTKIN---TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IED 179
Query: 453 STSLNILELGNNNLNG 468
LN L + + G
Sbjct: 180 FPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 24/186 (12%), Positives = 57/186 (30%), Gaps = 35/186 (18%)
Query: 403 TNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELG 462
+ L + + S+ + L + + + ++ L +
Sbjct: 20 STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTIN 74
Query: 463 NNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLS 522
N + P I+ L+ L+ L + +++ IP+LS + D+S
Sbjct: 75 NIHATNYNP--ISGLSNLERLRIMGKDVT------------SDKIPNLSGLTSLTLLDIS 120
Query: 523 YNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNL 582
++ I + L ++LS N + L L +L
Sbjct: 121 HSAHDDSILT---------------KINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSL 164
Query: 583 DLSYNE 588
++ ++
Sbjct: 165 NIQFDG 170
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 4e-17
Identities = 60/264 (22%), Positives = 98/264 (37%), Gaps = 64/264 (24%)
Query: 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---LTWLETLSLCSN 187
+ L+LS N L S + L++L L ++ ++ G L+ L TL L N
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIED--GAYQSLSHLSTLILTGN 86
Query: 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFT 247
++SL + F+G L+ LQ L + L+ SL
Sbjct: 87 --------------PIQSL--ALGAFSG--------LSSLQKLVAVETNLA-SLENFPIG 121
Query: 248 NLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAE 306
+L++L L+V++NL+ PE S+L L L N+ SI + L +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD-----LRV-LHQ 174
Query: 307 LQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNK 366
+ + S+ L+ N + I LK + L N+
Sbjct: 175 MPLLNL----------------------SLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ 211
Query: 367 LSGSIPRELNDS-ESLVEINLDGN 389
L S+P + D SL +I L N
Sbjct: 212 LK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 1e-14
Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 36/239 (15%)
Query: 357 LKYIRLSNNKLSGSIPRELNDS-ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSS 415
K + LS N L + S L ++L + + + +LS L L L+
Sbjct: 30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTG 85
Query: 416 NMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSIPEK 473
N + + L S+Q L S+ +L L + +N + S
Sbjct: 86 NPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLP 142
Query: 474 IA--DLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIP 531
+L L+ LDLS N + S + + + + + DLS N ++
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ----SIYCTDLR--VLHQMPLLNL--SLDLSLNPMN---- 190
Query: 532 KELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590
+I +L L N+L + F L L + L N +D
Sbjct: 191 ------------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 23/200 (11%)
Query: 224 LTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLG 282
LQ LDLS + ++ + +L LS L ++ N + ++ S L L
Sbjct: 51 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 108
Query: 283 INQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQL-SGPLPSWLGKWNQMESVWLNNN 341
S+++ L L+ + N + S LP + +E + L++N
Sbjct: 109 ETNLA-SLENFP-----IGH-LKTLKELNVAH--NLIQSFKLPEYFSNLTNLEHLDLSSN 159
Query: 342 QFIGRIPLEV-GNCSMLKYIR----LSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIE 396
+ I I + + LS N ++ I L E+ LD N L +
Sbjct: 160 K-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPD 217
Query: 397 DVFGRCTNLSQLEKLDLSSN 416
+F L+ L+K+ L +N
Sbjct: 218 GIF---DRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 4e-13
Identities = 51/270 (18%), Positives = 82/270 (30%), Gaps = 87/270 (32%)
Query: 225 TRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGI 283
++LDLS N L L F + L LD+S + I L LS L
Sbjct: 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85
Query: 284 NQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQF 343
N + L + FS + ++ +
Sbjct: 86 NP------------------IQSLALGAFS---------------GLSSLQKLVAVETN- 111
Query: 344 IGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRC 402
+ + G+ LK + +++N + S + + F
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQ-SFK----------------------LPEYF--- 145
Query: 403 TNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILEL 461
+NL+ LE LDLSSN + I L + +L L+ L+L
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS--------------------LDL 184
Query: 462 GNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491
N +N I +L+ L L N L
Sbjct: 185 SLNPMN-FIQPGAFKEIRLKELALDTNQLK 213
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 6e-13
Identities = 49/249 (19%), Positives = 87/249 (34%), Gaps = 54/249 (21%)
Query: 122 SPLLFD-LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---LT 177
F +L+VL+LS+ + +L L L L N + SL G L+
Sbjct: 44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLAL--GAFSGLS 100
Query: 178 WLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLL 237
L+ L L SL L L++L+++ NL+
Sbjct: 101 SLQKLVAVET--------------NLASL--ENFPIGH--------LKTLKELNVAHNLI 136
Query: 238 SGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDH----YLGINQFTGSIQS 292
F+NL +L +LD+S+N + +I L ++ L +N IQ
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194
Query: 293 ELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVG 352
E+++ + NQL + ++ +WL+ N P +
Sbjct: 195 ---------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN------PWDC- 238
Query: 353 NCSMLKYIR 361
+C + Y+
Sbjct: 239 SCPRIDYLS 247
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 5e-12
Identities = 50/229 (21%), Positives = 82/229 (35%), Gaps = 37/229 (16%)
Query: 363 SNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRI 422
IP L S ++L N L F + +L+ LDLS + I
Sbjct: 15 MELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSF---FSFPELQVLDLSRCEIQ-TI 67
Query: 423 PKEI-GNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSIPEKIAD-LAQ 479
+L + L L N S+ + +SL L NL S+ L
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKT 125
Query: 480 LQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVV 539
L+ L++++N + L + YF N+ +L DLS N +
Sbjct: 126 LKELNVAHNLIQSFKLPE---YFS--NLTNL------EHLDLSSNKIQ------------ 162
Query: 540 VLTGYIPRSLGHL-SCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
+ R L + ++ L+LS N ++ + P +F + L L L N
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTN 210
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 46/166 (27%), Positives = 64/166 (38%), Gaps = 10/166 (6%)
Query: 122 SPLLFD-LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLE 180
S ++L LNL + L L L L L NQL SLP L L
Sbjct: 47 SLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALT 103
Query: 181 TLSLCSNSFTGEMPSELGD-MKQLKSLDFSGNGFNGTVPIRL-GELTRLQDLDLSDNLLS 238
L + N T +P + +L+ L GN T+P L +L+ L L++N L+
Sbjct: 104 VLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161
Query: 239 GSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGIN 284
L L L++L L + N L IP L +L N
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 2e-14
Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 8/159 (5%)
Query: 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFT 190
+L+LS+NLL+ + RL L+L +L+ L L L TL L N
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT-LPVLGTLDLSHNQLQ 90
Query: 191 GEMPSELGDMKQLKSLDFSGNGFNGTVPIRL-GELTRLQDLDLSDNLLSGSLTVSLFTNL 249
+P + L LD S N ++P+ L LQ+L L N L +L L T
Sbjct: 91 -SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT 147
Query: 250 QSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFT 287
L L ++NN L+ +P + + L+ L L N
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 5e-14
Identities = 55/248 (22%), Positives = 87/248 (35%), Gaps = 45/248 (18%)
Query: 144 QPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQL 203
P +VS + ++ + L+ +LP + L L N + L +L
Sbjct: 1 HPICEVSKVASHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRL 57
Query: 204 KSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263
L+ + + G L L LDLS N L SL L L +L+ LDVS N L+
Sbjct: 58 TQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLT 113
Query: 264 GNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGP 322
++P L +L + YL N+ ++ L +L+
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELK-TLPPGL-----LTP-TPKLEK------------- 152
Query: 323 LPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDSESL 381
+ L NN + +P + L + L N L +IP+ S L
Sbjct: 153 -------------LSLANNN-LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Query: 382 VEINLDGN 389
L GN
Sbjct: 198 PFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 1e-13
Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 317 NQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELN 376
N L + L + ++ + L+ + + ++ ++ G +L + LS+N+L S+P
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQ 97
Query: 377 DSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQIL 435
+L +++ N L+ L +L++L L N L +P + ++ L
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGAL---RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKL 153
Query: 436 KLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYN 488
L +N +P L + +L+ L L N+L +IP+ L F L N
Sbjct: 154 SLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 42/240 (17%), Positives = 74/240 (30%), Gaps = 48/240 (20%)
Query: 203 LKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL 262
++ +P L L LS+NLL + +++ L+ L++ L
Sbjct: 12 HLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL 67
Query: 263 SGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGP 322
+ L L L NQ
Sbjct: 68 T--KLQVDGTLPVLGTLDLSHNQLQS---------------------------------- 91
Query: 323 LPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDS-ES 380
LP + + ++ N+ + +PL L+ + L N+L ++P L
Sbjct: 92 LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPK 149
Query: 381 LVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSN 440
L +++L N L+ + L L+ L L N L IPK + L+ N
Sbjct: 150 LEKLSLANNNLTELPAGLL---NGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 8e-12
Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 337 WLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTI 395
L+ N + L + L + L +L+ + L ++L N L ++
Sbjct: 37 HLSENL-LYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SL 92
Query: 396 EDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDS- 453
+ L L LD+S N LT +P L +Q L L N ++P L
Sbjct: 93 PLLG---QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT 147
Query: 454 TSLNILELGNNNLNGSIPEKIAD-LAQLQFLDLSYNNLSR 492
L L L NNNL +P + + L L L L N+L
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT 186
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Query: 357 LKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSN 416
+ LS N L L L ++NLD L T V G L L LDLS N
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGT---LPVLGTLDLSHN 87
Query: 417 MLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSIPEKI- 474
L +P L ++ +L ++ N S+P+ L L L N L ++P +
Sbjct: 88 QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLL 144
Query: 475 ADLAQLQFLDLSYNNLS 491
+L+ L L+ NNL+
Sbjct: 145 TPTPKLEKLSLANNNLT 161
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 6e-11
Identities = 43/190 (22%), Positives = 64/190 (33%), Gaps = 41/190 (21%)
Query: 402 CTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILEL 461
+ ++ +++ LT +P ++ + IL L+ N L T L L L
Sbjct: 6 VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 462 GNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDL 521
L + L L LDLS+N L +P L D+
Sbjct: 63 DRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-----SLPLLGQ--TLPAL------TVLDV 107
Query: 522 SYNMLSGPIPKELGSCVVVLTGYIP----RSLGHLSCSVKLNLSGNKLSVLVPTSFGNLN 577
S+N L+ +P R LG L +L L GN+L L P
Sbjct: 108 SFNRLT----------------SLPLGALRGLGELQ---ELYLKGNELKTLPPGLLTPTP 148
Query: 578 GLTNLDLSYN 587
L L L+ N
Sbjct: 149 KLEKLSLANN 158
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 7e-05
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 121 VSPLLFD-LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---L 176
+ L +L+ L L N L P ++ +L+ LSL N L+ LP+ G+ L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGL 171
Query: 177 TWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGN 211
L+TL L NS +P L GN
Sbjct: 172 ENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 35/154 (22%), Positives = 48/154 (31%), Gaps = 50/154 (32%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTD-VASAISYVPPEYGRARKANERDN 683
DIK+ N+LL + A + DFGLA KS T Y+ PE +RD
Sbjct: 156 DIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDA 215
Query: 684 -----IYRFGVVLLELVIRKQPTG-----------------PKFED-KDIVVG------- 713
+Y G+VL EL R P ED +++VV
Sbjct: 216 FLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVL 275
Query: 714 -------------------CVSDNPIAKPGMLRV 728
C + A+ V
Sbjct: 276 RDYWQKHAGMAMLCETIEECWDHDAEARLSAGCV 309
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 580 TNLDLSYNEFD-GNNKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK 624
+ +DL + G FG V+K + + VAVK
Sbjct: 10 SGVDLGTENLYFQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKI 54
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 48/238 (20%), Positives = 85/238 (35%), Gaps = 38/238 (15%)
Query: 357 LKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIE-DVFGRCTNLSQLEKLDLS- 414
+R KL + L +I + N + IE DVF +NL +L ++ +
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF---SNLPKLHEIRIEK 88
Query: 415 SNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIP-MRLGDSTSLNILELGNNNLNGSIPE 472
+N L I E NL ++Q L +++ +P + S +L++ +N +I
Sbjct: 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIER 146
Query: 473 K-IADL-AQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPI 530
L + L L+ N + H+S F+ + +L+ S N N L +
Sbjct: 147 NSFVGLSFESVILWLNKNGIQ----EIHNSAFNGTQLDELNLSDN--------NNLEE-L 193
Query: 531 PKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNE 588
P S V L++S ++ L NL L +
Sbjct: 194 P--------------NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 4e-14
Identities = 52/292 (17%), Positives = 88/292 (30%), Gaps = 50/292 (17%)
Query: 178 WLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLL 237
+ T E+PS+L + L F L+ +++S N +
Sbjct: 10 SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 238 SGSLTVSLFTNLQSLSYLDVSN-NLLSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELG 295
+ +F+NL L + + N L I PE +L L +
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTG---------- 115
Query: 296 NCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV--GN 353
+ L + Q + + +N I I G
Sbjct: 116 --------IKHLPDVHKIHSL---------------QKVLLDIQDNINIHTIERNSFVGL 152
Query: 354 CSMLKYIRLSNNKLSGSIPRELNDSESLVEINL-DGNMLSGTIEDVFGRCTNLSQLEKLD 412
+ L+ N + I + L E+NL D N L DVF S LD
Sbjct: 153 SFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVF---HGASGPVILD 208
Query: 413 LSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNN 464
+S + +P L +++ L+ S + +P L +L L
Sbjct: 209 ISRTRIH-SLPSYG--LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 3e-13
Identities = 43/242 (17%), Positives = 75/242 (30%), Gaps = 42/242 (17%)
Query: 354 CSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDL 413
CS + +K++ IP +L + +E+ L + F + LEK+++
Sbjct: 9 CS-NRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAF---SGFGDLEKIEI 61
Query: 414 SSNMLTGRIP----KEIGNLRSIQILKLNSNFFNGSIPMR-LGDSTSLNILELGNNNLNG 468
S N + I + L I+I K N+ I + +L L + N +
Sbjct: 62 SQNDVLEVIEADVFSNLPKLHEIRIEKANNLL---YINPEAFQNLPNLQYLLISNTGIK- 117
Query: 469 SIPEKI-ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLS 527
+P+ Q LD+ N I + + F + S L+ N +
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNI---NIHTIERNSFVGL-------SFESVILWLNKNGIQ 167
Query: 528 GPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
I + N L L F +G LD+S
Sbjct: 168 E-IH--------------NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212
Query: 588 EF 589
Sbjct: 213 RI 214
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 5e-11
Identities = 31/165 (18%), Positives = 49/165 (29%), Gaps = 7/165 (4%)
Query: 128 LSKLRVLNLSQNLLFGQPSPQV-SNLKRLKMLSL-GENQLSGSLPSQLGVLTWLETLSLC 185
L + +SQN + V SNL +L + + N L P L L+ L +
Sbjct: 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112
Query: 186 SNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRL--GELTRLQDLDLSDNLLSGSLTV 243
+ Q LD N T+ G L L+ N + +
Sbjct: 113 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN 171
Query: 244 SLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFT 287
S F Q NN L +P ++ + +
Sbjct: 172 SAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH 215
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 1e-10
Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 18/239 (7%)
Query: 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQ-LGVLTWLETLSLC-SNS 188
L L S L+ + + +N + + + L L + + +N+
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91
Query: 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTN 248
P ++ L+ L S G + + LD+ DN+ ++ + F
Sbjct: 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
Query: 249 LQS-LSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAE 306
L L ++ N + I + + + N + +++ F +
Sbjct: 152 LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDV-----FHG-ASG 203
Query: 307 LQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNN 365
I S ++ L ++ + N + + + L L+
Sbjct: 204 PVILDISR--TRIHSLPSYGLENLKKLRARSTYNLKKLPTL----EKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 39/254 (15%), Positives = 72/254 (28%), Gaps = 25/254 (9%)
Query: 97 LKDLEELLLRVVYQVLRTQSLKGPVSPLLFD-LSKLRVLNLSQNLLFGQPSPQVSNLKRL 155
L L E+ + + +L ++P F L L+ L +S + P + +
Sbjct: 78 LPKLHEIRI------EKANNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 130
Query: 156 KMLSLGENQLSGSLPSQL--GVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGF 213
+L + +N ++ G+ L L N S + + N
Sbjct: 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNL 190
Query: 214 NGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHL 273
+ LD+S + SL NL+ L N P + L
Sbjct: 191 EELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL----KKLPTLEKL 245
Query: 274 KKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQM 333
L + L +C F + ++ + L + Q
Sbjct: 246 VALMEASLTYP----------SHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQR 295
Query: 334 ESVWLNNNQFIGRI 347
S+ +N R
Sbjct: 296 SSLAEDNESSYSRG 309
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 8e-14
Identities = 50/252 (19%), Positives = 95/252 (37%), Gaps = 28/252 (11%)
Query: 95 NALKDLEEL--LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNL 152
+K + + L+ +S+ V+ +L+ + + + + + + + L
Sbjct: 12 TPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI--KSVQGIQYL 67
Query: 153 KRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNG 212
+ L L N+L+ P L L L L L N S L D+K+LKSL NG
Sbjct: 68 PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNG 123
Query: 213 FNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISH 272
+ L L +L+ L L +N ++ +++ + L L L + +N +S +I P ++
Sbjct: 124 ISDING--LVHLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQIS-DIVP-LAG 176
Query: 273 LKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQ 332
L KL + YL N + + L KN + +
Sbjct: 177 LTKLQNLYLSKNHIS-DL-RALAGLKNLD---------VLELFSQECLNKPINHQSNLVV 225
Query: 333 MESVWLNNNQFI 344
+V + +
Sbjct: 226 PNTVKNTDGSLV 237
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 3e-13
Identities = 49/271 (18%), Positives = 106/271 (39%), Gaps = 31/271 (11%)
Query: 221 LGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHY 280
+L ++ L S+ + +N+ + ++ I +L ++ +
Sbjct: 20 DDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLF 74
Query: 281 LGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNN 340
L N+ T I L N KN L L + N++ L +++S+ L +
Sbjct: 75 LNGNKLT-DI-KPLANLKN----LGWLFL-----DENKVKDLSS--LKDLKKLKSLSLEH 121
Query: 341 NQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFG 400
N L + L+ + L NNK++ L+ L ++L+ N +S I +
Sbjct: 122 NGISDINGLV--HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPL-- 174
Query: 401 RCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILE 460
L++L+ L LS N ++ + + L+++ +L+L S + N ++
Sbjct: 175 --AGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230
Query: 461 LGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491
+ +L PE I+D + ++ ++
Sbjct: 231 NTDGSL--VTPEIISDDGDYEKPNVKWHLPE 259
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 6e-11
Identities = 52/247 (21%), Positives = 90/247 (36%), Gaps = 46/247 (18%)
Query: 353 NCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLD 412
+ L ++ ++ N+ S+ +I + + + +++ + L + KL
Sbjct: 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGI----QYLPNVTKLF 74
Query: 413 LSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPE 472
L+ N LT I K + NL+++ L L+ N + L D L L L +N ++ I
Sbjct: 75 LNGNKLT-DI-KPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DI-N 128
Query: 473 KIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPK 532
+ L QL+ L L N ++ +I LS L N +S +P
Sbjct: 129 GLVHLPQLESLYLGNNKIT--------------DITVLSRLTKLDTLSLEDNQISDIVP- 173
Query: 533 ELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592
L L+ L LS N +S L + L L L+L E
Sbjct: 174 ----------------LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 215
Query: 593 NKFCEKN 599
+ N
Sbjct: 216 PINHQSN 222
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 47/263 (17%), Positives = 88/263 (33%), Gaps = 46/263 (17%)
Query: 327 LGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINL 386
+ + L + + + I +N+ + S+ + ++ ++ L
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFL 75
Query: 387 DGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSI 446
+GN L+ I+ + NL L L L N + + + +L+ ++ L L N + I
Sbjct: 76 NGNKLT-DIKPL----ANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DI 127
Query: 447 PMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVN 506
L L L LGNN + + ++ L +L L L N +S +
Sbjct: 128 NG-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS--------------D 170
Query: 507 IPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLS 566
I L+ + LS N +S +L R+L L L L +
Sbjct: 171 IVPLAGLTKLQNLYLSKNHIS-----DL------------RALAGLKNLDVLELFSQECL 213
Query: 567 VLVPTSFGNLNGLTNLDLSYNEF 589
NL + +
Sbjct: 214 NKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 9/141 (6%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184
L L +L L L N + + +S L +L LSL +NQ+S + L LT L+ L L
Sbjct: 130 LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYL 185
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVS 244
N + L +K L L+ L + +D L +T
Sbjct: 186 SKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL---VTPE 240
Query: 245 LFTNLQSLSYLDVSNNLLSGN 265
+ ++ +V +L
Sbjct: 241 IISDDGDYEKPNVKWHLPEFT 261
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 84/473 (17%), Positives = 152/473 (32%), Gaps = 103/473 (21%)
Query: 155 LKMLSLGENQLS-GSLPSQLGVLTWLETLSLCSNSFTGE----MPSELGDMKQLKSLDFS 209
++ L + +LS L +L + + L T + S L L L+
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 210 GNGFNGTVPIRLGEL-----TRLQDLDLSDNLLSG---SLTVSLFTNLQSLSYLDVSNN- 260
N + + ++Q L L + L+G + S L +L L +S+N
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124
Query: 261 -------LLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFS 313
LL + L+KL L + + L + K EL +
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKL---QLEYCSLSAASCEPLASVLRAKPDFKELTV---- 177
Query: 314 AGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLS----G 369
N ++ L + L+ C L+ ++L + ++
Sbjct: 178 -SNNDINEAGVRVLCQ------------------GLKDSPCQ-LEALKLESCGVTSDNCR 217
Query: 370 SIPRELNDSESLVEINLDGNML--SGTIEDVFGRCTNLSQLEKLDLSSNMLTGR----IP 423
+ + SL E+ L N L G E G S+L L + +T + +
Sbjct: 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277
Query: 424 KEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILE-LGNNNLNGSIPEKIADLAQLQF 482
+ + S++ L L N LGD + + E L QL+
Sbjct: 278 RVLRAKESLKELSLAGN--------ELGDEGARLLCETLLEPGC------------QLES 317
Query: 483 LDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLT 542
L + + + + S+F V L+ + + +S N L +EL
Sbjct: 318 LWVKSCSFT----AACCSHFSSV----LAQNRFLLELQISNNRLEDAGVRELC------- 362
Query: 543 GYIPRSLGHLSCSVK-LNLSGNKLS----VLVPTSFGNLNGLTNLDLSYNEFD 590
+ LG ++ L L+ +S + + + L LDLS N
Sbjct: 363 ----QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 7e-11
Identities = 73/429 (17%), Positives = 141/429 (32%), Gaps = 63/429 (14%)
Query: 92 AIANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQV-- 149
+ L+ + + L L K +S L L LNL N L G
Sbjct: 22 ELLPLLQQCQVVRLD--DCGLTEARCK-DISSALRVNPALAELNLRSNEL-GDVGVHCVL 77
Query: 150 ----SNLKRLKMLSLGENQLS----GSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMK 201
+ +++ LSL L+ G L S L L L+ L L N L +
Sbjct: 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137
Query: 202 Q-----LKSLDFSGNGFNGTVPIRLGEL----TRLQDLDLSDNLLSGS----LTVSLFTN 248
L+ L + L + ++L +S+N ++ + L L +
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197
Query: 249 LQSLSYLDVSNNLLS----GNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVL 304
L L + + ++ ++ ++ L + LG N+ +EL C
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL--CPGLLHPS 255
Query: 305 AELQIFTFSAGMNQLSGP----LPSWLGKWNQMESVWLNNNQF-------IGRIPLEVGN 353
+ L+ ++ L L ++ + L N+ + L
Sbjct: 256 SRLRTLWIWE--CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET-LLEPG 312
Query: 354 CSMLKYIRLSNNKLSG----SIPRELNDSESLVEINLDGNML--SGTIEDVFGRCTNLSQ 407
C L+ + + + + L + L+E+ + N L +G E G S
Sbjct: 313 CQ-LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371
Query: 408 LEKLDLSSNMLT----GRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS-----TSLNI 458
L L L+ ++ + + S++ L L++N + ++L +S L
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 431
Query: 459 LELGNNNLN 467
L L + +
Sbjct: 432 LVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 58/379 (15%), Positives = 125/379 (32%), Gaps = 67/379 (17%)
Query: 250 QSLSYLDVSNNLLSGN----IPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLA 305
+ LD+ LS + P + + + L T + ++ + LA
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVV---RLDDCGLTEARCKDISSALRVNPALA 59
Query: 306 ELQIFTFS---AGMNQLSGPLPSWLGKWNQMESVWLNNNQF----IGRIPLEVGNCSMLK 358
EL + + G++ + L + +++ + L N G + + L+
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQT---PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116
Query: 359 YIRLSNNKLSGSIPREL-----NDSESLVEINLDGNMLSGT----IEDVFGRCTNLSQLE 409
+ LS+N L + + L + L ++ L+ LS + V + +
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD---FK 173
Query: 410 KLDLSSNMLTGRIPKEIG-----NLRSIQILKLNSNFFN----GSIPMRLGDSTSLNILE 460
+L +S+N + + + + ++ LKL S + + SL L
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233
Query: 461 LGNNNLNGSIPEKIADLAQ-----LQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHN 515
LG+N L ++ L+ L + ++ +K V L +
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT----AKGCGDLCRV----LRAKES 285
Query: 516 YRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVK-LNLSGNKLSVLVPTSFG 574
++ L+ N L + L +L C ++ L + + + F
Sbjct: 286 LKELSLAGNELGDEGARLLC-----------ETLLEPGCQLESLWVKSCSFTAACCSHFS 334
Query: 575 NL----NGLTNLDLSYNEF 589
++ L L +S N
Sbjct: 335 SVLAQNRFLLELQISNNRL 353
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 40/244 (16%), Positives = 80/244 (32%), Gaps = 44/244 (18%)
Query: 203 LKSLDFSGNGFNGTVPIR-LGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNL 261
++L T+P L + + +S ++ L F NL ++++++ N
Sbjct: 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 262 LSGNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLS 320
I P+ L L + L T +
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTG------------------LKMFPDLTKVYSTDIF- 132
Query: 321 GPLPSWLGKWNQMESVWLNNNQFIGRIPLEV--GNCSMLKYIRLSNNKLSGSIPRELNDS 378
+ + +N ++ IP+ G C+ ++L NN + S+ +
Sbjct: 133 -------------FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178
Query: 379 ESLVEINLDGNMLSGTI-EDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKL 437
L + L+ N I +D FG S LD+S +T +P + L ++ L
Sbjct: 179 TKLDAVYLNKNKYLTVIDKDAFGGVY--SGPSLLDVSQTSVT-ALPSKG--LEHLKELIA 233
Query: 438 NSNF 441
+ +
Sbjct: 234 RNTW 237
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 2e-12
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 10/157 (6%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQV-SNLKRLKMLSLGENQLSGSLP--SQLGVLTWLETLS 183
+LSK+ + + P L LK L + L P +++ L
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILE 136
Query: 184 LCSNSFTGEMPSEL--GDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSL 241
+ N + +P G + +L NGF +V T+L + L+ N +
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVI 195
Query: 242 TVSLFTNLQS-LSYLDVSNNLLSGNIPPEI-SHLKKL 276
F + S S LDVS ++ +P + HLK+L
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKEL 231
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 4e-12
Identities = 38/240 (15%), Positives = 81/240 (33%), Gaps = 40/240 (16%)
Query: 354 CSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDL 413
C + R++ + IP + S + L L F +NL + ++ +
Sbjct: 10 CHQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAF---SNLPNISRIYV 62
Query: 414 SSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMR-LGDSTSLNILELGNNNLNGSIP 471
S ++ ++ NL + +++ + I L + L L + N L P
Sbjct: 63 SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFP 121
Query: 472 E--KIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGP 529
+ K+ L+++ N I + F + + L N +
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSI---PVNAFQGL-------CNETLTLKLYNNGFT-- 169
Query: 530 IPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNK-LSVLVPTSFGNL-NGLTNLDLSYN 587
+ + + + L+ NK L+V+ +FG + +G + LD+S
Sbjct: 170 --------------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 8e-11
Identities = 34/235 (14%), Positives = 81/235 (34%), Gaps = 38/235 (16%)
Query: 357 LKYIRLSNNKLSGSIPRE-LNDSESLVEINLDGNMLSGTIE-DVFGRCTNLSQLEKLDLS 414
+ ++L L +IP ++ ++ I + ++ +E F NLS++ +++
Sbjct: 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSF---YNLSKVTHIEIR 88
Query: 415 SNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIP--MRLGDSTSLNILELGNNNLNGSIP 471
+ I + L ++ L + + P ++ + ILE+ +N SIP
Sbjct: 89 NTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147
Query: 472 EKI-ADL-AQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGP 529
L + L L N + + ++ F+ + + + N + + G
Sbjct: 148 VNAFQGLCNETLTLKLYNNGFTS--VQGYA--FNGTKLDAVYLNKNKYLTVIDKDAFGG- 202
Query: 530 IPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDL 584
+ S +L ++S ++ L +L L +
Sbjct: 203 ----VYSGPSLL-----------------DVSQTSVTALPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 28/167 (16%), Positives = 61/167 (36%), Gaps = 9/167 (5%)
Query: 331 NQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRE-LNDSESLVEINLDG 388
+ ++++ + + ++ N S + +I + N + I + L + L + +
Sbjct: 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114
Query: 389 NMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI--GNLRSIQILKLNSNFFNGSI 446
L D + + L+++ N IP G LKL +N F S+
Sbjct: 115 TGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SV 171
Query: 447 PMRLGDSTSLNILELGNNNLNGSIPEKI-ADLAQ-LQFLDLSYNNLS 491
+ T L+ + L N I + + LD+S +++
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 11/169 (6%)
Query: 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---LTWLETLSLCSN 187
+ L L + L PS SNL + + + + L S L+ + + + +
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES--HSFYNLSKVTHIEIRNT 90
Query: 188 SFTGEMPSE-LGDMKQLKSLDFSGNGFNGTVP--IRLGELTRLQDLDLSDNLLSGSLTVS 244
+ + L ++ LK L G P ++ L+++DN S+ V+
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149
Query: 245 LFTNLQSLS-YLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQS 292
F L + + L + NN + ++ + KL YL N++ I
Sbjct: 150 AFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDK 197
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 4e-13
Identities = 41/256 (16%), Positives = 73/256 (28%), Gaps = 58/256 (22%)
Query: 354 CSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDL 413
L L++ + S+S E L + D QL + +L
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDS----ATDEQLFRCEL 356
Query: 414 SSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNG----- 468
S T + E+ + + +Q L+ + + +I + + L + +
Sbjct: 357 SVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415
Query: 469 ----------------SIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSY 512
+ A ++ L L++ +L+ + L
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--------------LCHLEQ 461
Query: 513 SHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTS 572
DLS+N L +P +L L C L S N L +
Sbjct: 462 LLLVTHLDLSHNRLRA----------------LPPALAALRCLEVLQASDNALENV--DG 503
Query: 573 FGNLNGLTNLDLSYNE 588
NL L L L N
Sbjct: 504 VANLPRLQELLLCNNR 519
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 69.8 bits (170), Expect = 1e-12
Identities = 49/254 (19%), Positives = 86/254 (33%), Gaps = 33/254 (12%)
Query: 23 QRIELRGSPQEAKSVPLDLQNHPMRSKEQFNIKNAIQAFDFIIFNFNSLMMGKLRLRQPY 82
R S + + +L + +++ + + N L+ L +R
Sbjct: 338 PECWCRDSATDEQLFRCELSVEKSTVLQSE-LESCKELQELEPENKWCLLTIILLMRALD 396
Query: 83 KTLSRRLGLAIANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLF 142
L + L + LK ++ + R Y S L + + +RVL+L+ L
Sbjct: 397 PLLYEKETLQYFSTLKAVDPM--RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL- 453
Query: 143 GQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQ 202
+ L + L L N+L +LP L L LE L N
Sbjct: 454 -TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN--------------A 497
Query: 203 LKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL 262
L+++D + L RLQ+L L +N L S + + L L++ N L
Sbjct: 498 LENVD------------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
Query: 263 SGNIPPEISHLKKL 276
L ++
Sbjct: 546 C-QEEGIQERLAEM 558
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 2e-12
Identities = 43/265 (16%), Positives = 93/265 (35%), Gaps = 23/265 (8%)
Query: 229 DLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTG 288
++ L ++T S + + + + ++L L + + T
Sbjct: 305 PAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEKST- 362
Query: 289 SIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIP 348
+QSEL +CK L EL+ + + ++ +
Sbjct: 363 VLQSELESCKE----LQELEPENKWCLLTIILLM--------RALDPLLYEKETLQYFST 410
Query: 349 LEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQL 408
L+ + Y+ +K + + ++L L+ + + L +
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHL----EQLLLV 465
Query: 409 EKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNG 468
LDLS N L +P + LR +++L+ + N ++ + + L L L NN L
Sbjct: 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQ 522
Query: 469 -SIPEKIADLAQLQFLDLSYNNLSR 492
+ + + +L L+L N+L +
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLCQ 547
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 64.8 bits (157), Expect = 5e-11
Identities = 54/358 (15%), Positives = 106/358 (29%), Gaps = 45/358 (12%)
Query: 235 NLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSEL 294
L + ++ ++ LS ++ ++ L +++ S++
Sbjct: 230 FYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT 289
Query: 295 GNCKNFKSVLAELQI-FTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGN 353
+ +N S + + W G +Q E V L + +
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW--CRDSAT 347
Query: 354 CSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDL 413
L LS K + + EL + L E+ + TI + L ++
Sbjct: 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406
Query: 414 SSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEK 473
+ L P L ++ L N + + + +L L + +L ++
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLEN------SVLKMEYADVRVLHLAHKDL--TVLCH 458
Query: 474 IADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPD-LSYSHNYRKFDLSYNMLSGPIPK 532
+ L + LDLS+N L +P L+ S N L
Sbjct: 459 LEQLLLVTHLDLSHNRLRA--------------LPPALAALRCLEVLQASDNALE----- 499
Query: 533 ELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVL-VPTSFGNLNGLTNLDLSYNEF 589
+ G + +L +L L N+L + L L+L N
Sbjct: 500 -------NVDG-----VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 7e-13
Identities = 54/171 (31%), Positives = 69/171 (40%), Gaps = 34/171 (19%)
Query: 122 SPLLFD-LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---LT 177
F L+KLR+L L+ N L P+ LK L+ L + +N+L +LP GV L
Sbjct: 53 PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPI--GVFDQLV 109
Query: 178 WLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLL 237
L L L N QLKSL F+ LT+L L L N L
Sbjct: 110 NLAELRLDRN--------------QLKSL--PPRVFDS--------LTKLTYLSLGYNEL 145
Query: 238 SGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQFT 287
SL +F L SL L + NN L +P L +L L NQ
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 49/169 (28%), Positives = 63/169 (37%), Gaps = 34/169 (20%)
Query: 121 VSPLLFD-LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---L 176
+ +F L L L ++ N L P L L L L NQL SLP V L
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPP--RVFDSL 132
Query: 177 TWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNL 236
T L LSL N +L+SL F+ LT L++L L +N
Sbjct: 133 TKLTYLSLGYN--------------ELQSL--PKGVFDK--------LTSLKELRLYNNQ 168
Query: 237 LSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGIN 284
L + F L L L + NN L +P L+KL L N
Sbjct: 169 LK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 6e-12
Identities = 64/269 (23%), Positives = 108/269 (40%), Gaps = 52/269 (19%)
Query: 340 NNQFIGRIPLEVGNCS-MLKYIRLSNNKLSGSIPREL-NDSESLVEINLDGNMLSGTIED 397
N + + V +C+ + S+ KL+ +IP + D++ L +L N LS
Sbjct: 1 NEA-LCKKDGGVCSCNNNKNSVDCSSKKLT-AIPSNIPADTKKL---DLQSNKLSSLPSK 55
Query: 398 VFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDS-TS 455
F L++L L L+ N L +P I L++++ L + N ++P+ + D +
Sbjct: 56 AF---HRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVN 110
Query: 456 LNILELGNNNLNGSIPEKI-ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSH 514
L L L N L S+P ++ L +L +L L YN L ++P +
Sbjct: 111 LAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ--------------SLPKGVFDK 155
Query: 515 --NYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTS 572
+ ++ L N L +P+ L L L L N+L + +
Sbjct: 156 LTSLKELRLYNNQLKR-VPEG-----------AFDKLTEL---KTLKLDNNQLKRVPEGA 200
Query: 573 FGNLNGLTNLDLSYNEFDGNNKFCEKNGI 601
F +L L L L N +D C NGI
Sbjct: 201 FDSLEKLKMLQLQENPWD-----CTCNGI 224
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 8e-12
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 13/177 (7%)
Query: 317 NQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPREL 375
N+LS + ++ ++LN+N+ + +P + L+ + +++NKL ++P +
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGV 104
Query: 376 NDS-ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQ 433
D +L E+ LD N L VF +L++L L L N L +PK + L S++
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVF---DSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK 160
Query: 434 ILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSIPEKIAD-LAQLQFLDLSYN 488
L+L +N +P D T L L+L NN L +PE D L +L+ L L N
Sbjct: 161 ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-11
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 13/160 (8%)
Query: 337 WLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDS-ESLVEINLDGNMLSGT 394
L +N+ + +P + + L+ + L++NKL ++P + ++L + + N L
Sbjct: 43 DLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 395 IEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDS 453
VF L L +L L N L +P + +L + L L N S+P + D
Sbjct: 101 PIGVF---DQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDK 155
Query: 454 -TSLNILELGNNNLNGSIPEKI-ADLAQLQFLDLSYNNLS 491
TSL L L NN L +PE L +L+ L L N L
Sbjct: 156 LTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 44/226 (19%)
Query: 168 SLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRL 227
++PS + + L L SN + L S F LT+L
Sbjct: 30 AIPS--NIPADTKKLDLQSNKLS-----------SLPSKAFHR-------------LTKL 63
Query: 228 QDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQF 286
+ L L+DN L +L +F L++L L V++N L +P + L L++ L NQ
Sbjct: 64 RLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL 121
Query: 287 TGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWL-GKWNQMESVWLNNNQFIG 345
S+ + F S L +L S G N+L LP + K ++ + L NNQ +
Sbjct: 122 K-SLPPRV-----FDS-LTKLT--YLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQ-LK 170
Query: 346 RIPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDS-ESLVEINLDGN 389
R+P + LK ++L NN+L +P DS E L + L N
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 8e-13
Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 617 GKTVAVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAIS-------YVP 669
K +D+ + N+L+ D + DFGL+ ++ + + +A Y+
Sbjct: 137 YKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMA 196
Query: 670 PEY-------GRARKANERDNIYRFGVVLLELVIRKQPTGP 703
PE A ++ ++Y G++ E+ +R P
Sbjct: 197 PEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFP 237
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 582 LDLSYNEFDGN-NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK 624
++ + +E + + IG G +G V+KG++ D + VAVK
Sbjct: 1 MEAAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKV 43
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 2e-11
Identities = 115/695 (16%), Positives = 200/695 (28%), Gaps = 195/695 (28%)
Query: 40 DLQNHPMR--SKEQF----NIKNAIQAFDFIIFNFNSLMMGKLRLRQPYKTLSRRLGLAI 93
D+Q+ P SKE+ K+A+ + L +Q
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF--------WTLLSKQ------------- 75
Query: 94 ANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQ-NLLFGQPSPQVS-N 151
++ E +LR+ Y+ L + P S + + + Q + L+ N
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQP-----SMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 152 LKRLKMLSLGENQLSGSLPSQLGVL---------TWLETLSLCSNSFTGEMPSELGDMKQ 202
+ RL+ L L VL TW+ L +C K
Sbjct: 131 VSRLQPYLKLRQALL-ELRPAKNVLIDGVLGSGKTWV-ALDVCL------------SYKV 176
Query: 203 LKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL 262
+DF F + L ++ LQ L + N
Sbjct: 177 QCKMDF--KIFW----LNLKNCNS---------------PETVLEMLQKL-LYQIDPNWT 214
Query: 263 SG-----NIPPEISHLKKLSDHYLGINQFTGS------------IQSELGNCK-----NF 300
S NI I ++ L + + +CK F
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 301 KSVLAELQ-IFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKY 359
K V L T ++ S L E L +LKY
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTL-------TPDEVKSL-----------------LLKY 310
Query: 360 IRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQL--EKL----DL 413
+ L PRE+ + +++ + D N + +KL +
Sbjct: 311 LDCRPQDL----PREVLTTNPRR-LSIIAESIR----DGLATWDNWKHVNCDKLTTIIES 361
Query: 414 SSNMLTGRIPKEIGNL-RSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPE 472
S N+L P E + + + +++ IP L L+++ ++ S
Sbjct: 362 SLNVLE---PAEYRKMFDRLSVFPPSAH-----IPTIL-----LSLIW---FDVIKSDVM 405
Query: 473 KIAD-LAQLQFLDLSYNNLSRPILSKHSSYFHE-VNIPDLSYSHNYRKFDLSYNMLSGPI 530
+ + L + ++ + I S Y V + + H R YN+
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISI---PSIYLELKVKLENEYALH--RSIVDHYNIPKTFD 460
Query: 531 PKELGSCVVVLTGYIPRSLG-HLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEF 589
+L L Y +G HL N+ + L F LD + E
Sbjct: 461 SDDLI--PPYLDQYFYSHIGHHLK-----NIEHPERMTLFRMVF--------LDFRFLE- 504
Query: 590 DGNNKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKKDIKASNILLNEDFDAKVLDFGLARL 649
K + G++ T+ K K I N E +LDF L ++
Sbjct: 505 ---QKIR-HDSTAWNASGSILN-TLQQLKF--YKPYI-CDNDPKYERLVNAILDF-LPKI 555
Query: 650 ISDCKSHISTDVASAISYVPPE---YGRARKANER 681
+ TD+ I+ + + + A K +R
Sbjct: 556 EENLICSKYTDLLR-IALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 4e-05
Identities = 64/440 (14%), Positives = 119/440 (27%), Gaps = 138/440 (31%)
Query: 21 RIQRIELR-GSPQEAKSVPLDLQNHP-----MRSKEQFNIKNA--IQAFDF--------- 63
I+LR S Q L + + + N++NA AF+
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-----NVQNAKAWNAFNLSCKILLTTR 273
Query: 64 ---IIFNFNSLMMGKLRLRQPYKTLSRRLGLAIANALKDLEELLLRVV---YQVLRTQSL 117
+ ++ + L TL+ +++ LLL+ + Q L + L
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPD----------EVKSLLLKYLDCRPQDLPREVL 323
Query: 118 KGPVSPLLFDL--SKLRV-LNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLG 174
+P + +R L N V N +L
Sbjct: 324 TT--NPRRLSIIAESIRDGLATWDNWK------HV-NCDKLT------------------ 356
Query: 175 VLTWLETLSLCSNSFTGEMPSELGDMKQL-KSLDFSGNGFNGTVPIRLGELTRL------ 227
+ N P+E +++ L F + I L+ +
Sbjct: 357 -----TIIESSLNVLE---PAE---YRKMFDRLSV----FPPSAHIPTILLSLIWFDVIK 401
Query: 228 QDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFT 287
D+ + N L V ++S + L + E + + + DHY F
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV-KLENEYALHRSIVDHYNIPKTF- 459
Query: 288 GSIQSELGNCKNFKSVLAELQ-IFTF------SAGMNQLSGPLPSWLGKWNQMESVWLNN 340
+ Q ++ + + + V+L+
Sbjct: 460 ---------DSDDLIPPYLDQYFYSHIGHHLKNIEHPE----------RMTLFRMVFLDF 500
Query: 341 NQFIGRIPLEVGNCSMLKYIRLS--NNKLSGSIPRELNDSES----LVEINLDGNMLSGT 394
F+ + K IR SGSI L + + + + L
Sbjct: 501 R-FLEQ-----------K-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 395 IEDVFGRC-TNLSQLEKLDL 413
I D + NL + DL
Sbjct: 548 ILDFLPKIEENLICSKYTDL 567
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
++K+ N+L+++ + KV DFGL+RL + + + ++ PE R +NE+ ++
Sbjct: 164 NLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGT-PEWMAPEVLRDEPSNEKSDV 222
Query: 685 YRFGVVLLELVIRKQP 700
Y FGV+L EL +QP
Sbjct: 223 YSFGVILWELATLQQP 238
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 601 IGGGGFGTVFKGTMPDGKTVAVKKDIKASNILLNEDFDAKVLD 643
IG G FGTV + G VAVK L+ +DF A+ ++
Sbjct: 45 IGAGSFGTVHRAEW-HGSDVAVKI-------LMEQDFHAERVN 79
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAI---SYVPPEYGRARKANER 681
D+K +NI+++ KV+DFG+AR I+D + + T A+ I Y+ PE R + R
Sbjct: 141 DVKPANIMISATNAVKVMDFGIARAIADSGNSV-TQTAAVIGTAQYLSPEQARGDSVDAR 199
Query: 682 DNIYRFGVVLLELVIRKQP 700
++Y G VL E++ + P
Sbjct: 200 SDVYSLGCVLYEVLTGEPP 218
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDC-KSHISTDVASAISYVPPE---YGRARKAN 679
+D+K++NI L+ED K+ DFGLA S SH ++ +I ++ PE + +
Sbjct: 144 RDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYS 203
Query: 680 ERDNIYRFGVVLLELVIRKQP 700
+ ++Y FG+VL EL+ + P
Sbjct: 204 FQSDVYAFGIVLYELMTGQLP 224
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 3e-11
Identities = 56/170 (32%), Positives = 70/170 (41%), Gaps = 32/170 (18%)
Query: 121 VSPLLFD-LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---L 176
+S F L+KL LNL N L + +L L L L NQL+ SLP GV L
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPL--GVFDHL 106
Query: 177 TWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNL 236
T L+ L L N QLKSL F+ LT+L++L L+ N
Sbjct: 107 TQLDKLYLGGN--------------QLKSL--PSGVFDR--------LTKLKELRLNTNQ 142
Query: 237 LSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQF 286
L S+ F L +L L +S N L L KL L NQF
Sbjct: 143 LQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 12/160 (7%)
Query: 334 ESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDS-ESLVEINLDGNMLS 392
E + L + + L ++ L N+L ++ + D L + L N L+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96
Query: 393 GTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLG 451
VF +L+QL+KL L N L +P + L ++ L+LN+N SIP
Sbjct: 97 SLPLGVF---DHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF 151
Query: 452 DS-TSLNILELGNNNLNGSIPEKIAD-LAQLQFLDLSYNN 489
D T+L L L N L S+P D L +LQ + L + N
Sbjct: 152 DKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITL-FGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 42/135 (31%), Positives = 53/135 (39%), Gaps = 9/135 (6%)
Query: 361 RLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTG 420
L + L+ L +NLD N L VF T L L L++N L
Sbjct: 41 DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE---LGTLGLANNQLA- 96
Query: 421 RIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSIPEKIAD-L 477
+P + +L + L L N S+P + D T L L L N L SIP D L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154
Query: 478 AQLQFLDLSYNNLSR 492
LQ L LS N L
Sbjct: 155 TNLQTLSLSTNQLQS 169
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 55/201 (27%), Positives = 73/201 (36%), Gaps = 48/201 (23%)
Query: 409 EKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLN 467
EKLDL S L L + L L+ N ++ + D T L L L NN L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96
Query: 468 GSIPEKIAD-LAQLQFLDLSYNNL-SRPILSKHSSYFHE-VNIPDLSYSHNYRKFDLSYN 524
S+P + D L QL L L N L S P S F + +L L+ N
Sbjct: 97 -SLPLGVFDHLTQLDKLYLGGNQLKSLP-----SGVFDRLTKLKEL---------RLNTN 141
Query: 525 MLSGPIPKELGSCVVVLTGYIP----RSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLT 580
L IP L +L L+LS N+L + +F L L
Sbjct: 142 QLQS----------------IPAGAFDKLTNLQ---TLSLSTNQLQSVPHGAFDRLGKLQ 182
Query: 581 NLDLSYNEFDGNNKFCEKNGI 601
+ L N+FD C + I
Sbjct: 183 TITLFGNQFD-----CSRCEI 198
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-11
Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 33/159 (20%)
Query: 132 RVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---LTWLETLSLCSNS 188
+ L QN + P S K+L+ + L NQ+S L L L +L L N
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLVLYGN- 90
Query: 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTN 248
++ L + F G L LQ L L+ N ++ L V F +
Sbjct: 91 -------------KITELP--KSLFEG--------LFSLQLLLLNANKIN-CLRVDAFQD 126
Query: 249 LQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQF 286
L +L+ L + +N L I S L+ + +L N F
Sbjct: 127 LHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 6e-10
Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 38/147 (25%)
Query: 121 VSPLLFD-LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---L 176
+ P F KLR ++LS N + L+ L L L N+++ LP + L
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPK--SLFEGL 103
Query: 177 TWLETLSLCSNSFTGEMPSELGDMKQLKSLD---FSGNGFNGTVPIRLGELTRLQDLDLS 233
L+ L L +N ++ L F L L L L
Sbjct: 104 FSLQLLLLNAN--------------KINCLRVDAFQD-------------LHNLNLLSLY 136
Query: 234 DNLLSGSLTVSLFTNLQSLSYLDVSNN 260
DN L ++ F+ L+++ + ++ N
Sbjct: 137 DNKLQ-TIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 8e-10
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 358 KYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNM 417
IRL N + P + + L I+L N +S D F L L L L N
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG---LRSLNSLVLYGNK 91
Query: 418 LTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSIPEKIA 475
+T +PK + L S+Q+L LN+N N + + +LN+L L +N L +I +
Sbjct: 92 IT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTF 148
Query: 476 D-LAQLQFLDLSYNN 489
L +Q + L N
Sbjct: 149 SPLRAIQTMHL-AQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 363 SNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRI 422
L+ IP L E++ EI L+ N + F + +L ++DLS+N ++ +
Sbjct: 19 RGKGLT-EIPTNL--PETITEIRLEQNTIKVIPPGAF---SPYKKLRRIDLSNNQIS-EL 71
Query: 423 PKEI-GNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSIPEKI-ADLAQ 479
+ LRS+ L L N +P L + SL +L L N +N + DL
Sbjct: 72 APDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHN 129
Query: 480 LQFLDLSYNNLSR 492
L L L N L
Sbjct: 130 LNLLSLYDNKLQT 142
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 27/140 (19%), Positives = 58/140 (41%), Gaps = 14/140 (10%)
Query: 228 QDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQF 286
++ L N + + F+ + L +D+SNN +S + P+ L+ L+ L N+
Sbjct: 35 TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92
Query: 287 TGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGR 346
T + L F+ L LQ+ +A N+++ + + + L +N+ +
Sbjct: 93 T-ELPKSL-----FEG-LFSLQLLLLNA--NKINCLRVDAFQDLHNLNLLSLYDNK-LQT 142
Query: 347 IPLEV-GNCSMLKYIRLSNN 365
I ++ + L+ N
Sbjct: 143 IAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 33/139 (23%)
Query: 454 TSLNILELGNNNLNGSIPEKI-ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSY 512
++ + L N + IP + +L+ +DLS N +S + ++
Sbjct: 32 ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISE--------------LAPDAF 76
Query: 513 SH--NYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVP 570
+ L N ++ +PK + L L L L+ NK++ L
Sbjct: 77 QGLRSLNSLVLYGNKITE-LPKS-----------LFEGLFSLQ---LLLLNANKINCLRV 121
Query: 571 TSFGNLNGLTNLDLSYNEF 589
+F +L+ L L L N+
Sbjct: 122 DAFQDLHNLNLLSLYDNKL 140
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-04
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 125 LFD-LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183
LF+ L L++L L+ N + +L L +LSL +N+L L ++T+
Sbjct: 99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158
Query: 184 LCSNSF 189
L N F
Sbjct: 159 LAQNPF 164
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 40/168 (23%), Positives = 60/168 (35%), Gaps = 43/168 (25%)
Query: 131 LRVLNLSQNLLFG-QPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---LTWLETLSLCS 186
+L+LS N L + + L L L L N L+ + S + L L L S
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISS--EAFVPVPNLRYLDLSS 97
Query: 187 NSFTGEMPSELGDMKQLKSLD---FSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTV 243
N L +LD FS L L+ L L +N + +
Sbjct: 98 N--------------HLHTLDEFLFSD-------------LQALEVLLLYNNHIV-VVDR 129
Query: 244 SLFTNLQSLSYLDVSNNLLSGNIPPEI----SHLKKLSDHYLGINQFT 287
+ F ++ L L +S N +S P E+ + L KL L N+
Sbjct: 130 NAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 7e-11
Identities = 49/220 (22%), Positives = 72/220 (32%), Gaps = 63/220 (28%)
Query: 225 TRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGI 283
+ LDLS N LS T L +L L +S+N L+ I E + L L
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97
Query: 284 NQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQF 343
N L L F FS + L E + L NN
Sbjct: 98 NH------------------LHTLDEFLFS-DLQAL--------------EVLLLYNNH- 123
Query: 344 IGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRC 402
I + + + L+ + LS N++S P ++
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQIS-RFP-----------------------VELIKDG 159
Query: 403 TNLSQLEKLDLSSNMLTGRIPKEIGNLRSI--QILKLNSN 440
L +L LDLSSN L ++ L + L L++N
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 41/161 (25%), Positives = 59/161 (36%), Gaps = 30/161 (18%)
Query: 128 LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQ-LGVLTWLETLSLCS 186
L+ L L LS N L S + L+ L L N L +L L LE L L +
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYN 121
Query: 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLF 246
N + +D N F + +LQ L LS N +S V L
Sbjct: 122 N--------------HIVVVD--RNAFED--------MAQLQKLYLSQNQIS-RFPVELI 156
Query: 247 TN---LQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGIN 284
+ L L LD+S+N L ++ L + L ++
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 50/236 (21%), Positives = 84/236 (35%), Gaps = 68/236 (28%)
Query: 363 SNNKLSGSIPRELNDSESLVEINLDGNMLSG-TIEDVFGRCTNLSQLEKLDLSSNMLTGR 421
S +L ++P+ L ++L N LS E T L+ L L LS N
Sbjct: 26 SKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTP---TRLTNLHSLLLSHN----- 74
Query: 422 IPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKI-ADLAQL 480
+ ++S F + +L L+L +N+L+ ++ E + +DL L
Sbjct: 75 -----------HLNFISSEAFVP-----V---PNLRYLDLSSNHLH-TLDEFLFSDLQAL 114
Query: 481 QFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV 540
+ L L N++ + +++ F ++ L +K LS N +S
Sbjct: 115 EVLLLYNNHIVV--VDRNA--FE--DMAQL------QKLYLSQNQIS------------- 149
Query: 541 LTGYIP----RSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592
P + L + L+LS NKL L T L L N
Sbjct: 150 ---RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY---LHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 25/139 (17%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186
+ LR L+LS N L S+L+ L++L L N + + + L+ L L
Sbjct: 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145
Query: 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLF 246
N Q+ +L +L LDLS N L L ++
Sbjct: 146 N--------------QISRF--PVELIKD-----GNKLPKLMLLDLSSNKLK-KLPLTDL 183
Query: 247 TNLQSLSYLDVSNNLLSGN 265
L + + L N
Sbjct: 184 QKLPAWVKNGLY---LHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 42/185 (22%), Positives = 67/185 (36%), Gaps = 42/185 (22%)
Query: 411 LDLSSNMLTGRIPKEIGNLRSIQILKLNSNFF----NGSIPMRLGDSTSLNILELGNNNL 466
L S L +P+ + +L L+ N P RL T+L+ L L +N+L
Sbjct: 23 LSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRL---TNLHSLLLSHNHL 76
Query: 467 NGSIPEKI-ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNM 525
N I + + L++LDLS N+L + F ++ L L N
Sbjct: 77 N-FISSEAFVPVPNLRYLDLSSNHLH----TLDEFLFS--DLQAL------EVLLLYNNH 123
Query: 526 LSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNL--- 582
+ + + ++ KL LS N++S + N L L
Sbjct: 124 IVV-VD--------------RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168
Query: 583 DLSYN 587
DLS N
Sbjct: 169 DLSSN 173
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 43/173 (24%)
Query: 224 LTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLG 282
LT L L LS N L+ ++ F + +L YLD+S+N L + + S L+ L L
Sbjct: 63 LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120
Query: 283 INQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQ 342
N + + F M QL + ++L+ NQ
Sbjct: 121 NNH------------------IVVVDRNAFE-DMAQL--------------QKLYLSQNQ 147
Query: 343 FIGRIPLEV----GNCSMLKYIRLSNNKLSGSIPRELNDSESLVE--INLDGN 389
I R P+E+ L + LS+NKL +L + V+ + L N
Sbjct: 148 -ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
DIK NIL++ + K+ DFG+A+ +S+ + V + Y PE + +E +I
Sbjct: 136 DIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDI 195
Query: 685 YRFGVVLLELVIRKQP 700
Y G+VL E+++ + P
Sbjct: 196 YSIGIVLYEMLVGEPP 211
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 7e-11
Identities = 55/331 (16%), Positives = 103/331 (31%), Gaps = 64/331 (19%)
Query: 155 LKMLSLGENQLSG----SLPSQLGVLTWLETLSLCSNSFTGEMPSELGDM----KQLKSL 206
++ SL + ++ S+ + L ++ + L N+ E L + K L+
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 207 DFSGNGFNGTVPIR----------LGELTRLQDLDLSDNLLS---GSLTVSLFTNLQSLS 253
+FS L + +L + LSDN + + L
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125
Query: 254 YLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFS 313
+L + NN L Q I L K + +
Sbjct: 126 HLYLHNNGLG--------------------PQAGAKIARALQELAVNKKAKNAPPLRSII 165
Query: 314 AGMNQLSGP----LPSWLGKWNQMESVWLNNNQF-----IGRIPLEVGNCSMLKYIRLSN 364
G N+L + +V + N + + C LK + L +
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225
Query: 365 NKLSG----SIPRELNDSESLVEINLDGNMLSGT----IEDVFGRCTNLSQLEKLDLSSN 416
N + ++ L +L E+ L+ +LS + D F + N+ L+ L L N
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYN 284
Query: 417 MLTGRIPKEIG-----NLRSIQILKLNSNFF 442
+ + + + + L+LN N F
Sbjct: 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 35/175 (20%), Positives = 55/175 (31%), Gaps = 31/175 (17%)
Query: 120 PVSPLLFDLSKLRVLNLSQN-------------LLFGQPSPQVSNLKRLKMLSLGENQLS 166
P+ L + L L L N L + + N L+ + G N+L
Sbjct: 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172
Query: 167 G----SLPSQLGVLTWLETLSLCSNSFTGEMPSE-----LGDMKQLKSLDFSGNGF--NG 215
L T+ + N E L ++LK LD N F G
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232
Query: 216 TVPIR--LGELTRLQDLDLSDNLLSGSLTVSLFTNLQ-----SLSYLDVSNNLLS 263
+ + L L++L L+D LLS ++ L L + N +
Sbjct: 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 38/296 (12%), Positives = 80/296 (27%), Gaps = 67/296 (22%)
Query: 353 NCSMLKYIRLSNNKLSG----SIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLS-- 406
+K I LS N + + + + L +++ L
Sbjct: 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89
Query: 407 -----QLEKLDLSSNMLTGRIPKEIGNL----RSIQILKLNSN-------------FFNG 444
+L + LS N + + + ++ L L++N
Sbjct: 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149
Query: 445 SIPMRLGDSTSLNILELGNNNLNG----SIPEKIADLAQLQFLDLSYNNLS----RPILS 496
++ + ++ L + G N L + L + + N + +L
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209
Query: 497 ---KHSSYFHEVNIPD--------------LSYSHNYRKFDLSYNMLSGPIPKELGSCVV 539
+ +++ D L N R+ L+ +LS +
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD--- 266
Query: 540 VLTGYIPRSLGHLSCSVKLNLSGNKLS-----VLVPTSFGNLNGLTNLDLSYNEFD 590
+ L L L N++ L + L L+L+ N F
Sbjct: 267 AFSKLENIGL------QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 36/208 (17%), Positives = 68/208 (32%), Gaps = 37/208 (17%)
Query: 92 AIANALKD---LEELLLRVVYQ-VLRTQSLKG--PVSPLLFDLSKLRVLNLSQNLLFGQP 145
++ + LE ++ ++ + + + L KL + LS N FG
Sbjct: 51 WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPT 109
Query: 146 SPQV-----SNLKRLKMLSLGENQLS-------------GSLPSQLGVLTWLETLSLCSN 187
+ + S L+ L L N L ++ + L ++ N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169
Query: 188 SFTGEMPSELGDM----KQLKSLDFSGNGFNGT-VPIRLGEL----TRLQDLDLSDNLLS 238
E + L ++ NG + L E L+ LDL DN +
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229
Query: 239 GSLTVSL---FTNLQSLSYLDVSNNLLS 263
+ +L + +L L +++ LLS
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLLS 257
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 7e-11
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVP-------------PE 671
D+ + N L+ E+ + V DFGLARL+ D K+ + PE
Sbjct: 133 DLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPE 192
Query: 672 YGRARKANERDNIYRFGVVLLELVIRKQP 700
R +E+ +++ FG+VL E++ R
Sbjct: 193 MINGRSYDEKVDVFSFGIVLCEIIGRVNA 221
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 7e-11
Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 34/160 (21%)
Query: 132 RVLNLSQNLLFGQPSPQV-SNLKRLKMLSLGENQLSGSLPSQLGV---LTWLETLSLCSN 187
L L+ N + + L +L+ ++ N+++ + G + + + L SN
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEE--GAFEGASGVNEILLTSN 91
Query: 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFT 247
+L+++ F G L L+ L L N ++ + F
Sbjct: 92 --------------RLENVQ--HKMFKG--------LESLKTLMLRSNRIT-CVGNDSFI 126
Query: 248 NLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQF 286
L S+ L + +N ++ + P L LS L N F
Sbjct: 127 GLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 7e-10
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 31/137 (22%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---LTWLETLS 183
L +LR +N S N + + + L N+L ++ + L L+TL
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQH--KMFKGLESLKTLM 111
Query: 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTV 243
L SN ++ + + F G L+ ++ L L DN ++ ++
Sbjct: 112 LRSN--------------RITCV--GNDSFIG--------LSSVRLLSLYDNQIT-TVAP 146
Query: 244 SLFTNLQSLSYLDVSNN 260
F L SLS L++ N
Sbjct: 147 GAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 5e-08
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 12/136 (8%)
Query: 334 ESVWLNNNQFIGRIPLEVG--NCSMLKYIRLSNNKLSGSIPRELNDS-ESLVEINLDGNM 390
+ LNNN+ + L+ I SNNK++ I + + EI L N
Sbjct: 35 AELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNR 92
Query: 391 LSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMR 449
L +F + L+ L L SN +T + + L S+++L L N ++
Sbjct: 93 LENVQHKMFKGLES---LKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPG 147
Query: 450 LGDS-TSLNILELGNN 464
D+ SL+ L L N
Sbjct: 148 AFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 29/165 (17%), Positives = 64/165 (38%), Gaps = 39/165 (23%)
Query: 228 QDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQF 286
+L L++N + +F L L ++ SNN ++ +I +++ L N+
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93
Query: 287 TGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGR 346
++Q ++ FK L L+ + L +N+ I
Sbjct: 94 E-NVQHKM-----FKG-LESLKT--------------------------LMLRSNR-ITC 119
Query: 347 IPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDS-ESLVEINLDGN 389
+ + S ++ + L +N+++ ++ D+ SL +NL N
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 33/181 (18%)
Query: 412 DLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSI 470
D S+ L +IP+ I + L+LN+N F + L + NN + I
Sbjct: 17 DCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DI 72
Query: 471 PEKI-ADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGP 529
E + + + L+ N L + F + L + L N ++
Sbjct: 73 EEGAFEGASGVNEILLTSNRLE----NVQHKMFK--GLESL------KTLMLRSNRITC- 119
Query: 530 IPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEF 589
+ S LS L+L N+++ + P +F L+ L+ L+L N F
Sbjct: 120 VG--------------NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
Query: 590 D 590
+
Sbjct: 166 N 166
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 121 VSPLLFD-LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---L 176
+ F+ S + + L+ N L L+ LK L L N+++ + + L
Sbjct: 72 IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGN--DSFIGL 128
Query: 177 TWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFN 214
+ + LSL N T P + L +L+ N FN
Sbjct: 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 8e-11
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAI---SYVPPE------YGRA 675
D+K+ NIL+ ++ + D GLA + S + + + Y+ PE
Sbjct: 138 DLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDC 197
Query: 676 RKANERDNIYRFGVVLLELVIRKQPTGPKFEDK 708
+ +R +I+ FG+VL E+ R G + K
Sbjct: 198 FDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYK 230
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 9e-11
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAI---SYVPPEYGRARKANER 681
D+K NIL++ D A ++DFG+A +D + T + + + Y+ PE A R
Sbjct: 159 DVKPENILVSADDFAYLVDFGIASATTD--EKL-TQLGNTVGTLYYMAPERFSESHATYR 215
Query: 682 DNIYRFGVVLLELVIRKQP 700
+IY VL E + P
Sbjct: 216 ADIYALTCVLYECLTGSPP 234
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 39/248 (15%), Positives = 82/248 (33%), Gaps = 32/248 (12%)
Query: 221 LGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHY 280
L +L ++ + L + + N+ + ++ + L + +
Sbjct: 15 DPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELH 69
Query: 281 LGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNN 340
L NQ + + S L + L EL + N+L + ++L+N
Sbjct: 70 LSHNQIS-DL-SPLKDLTK----LEELSV-----NRNRLKNLNG---IPSACLSRLFLDN 115
Query: 341 NQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFG 400
N+ L + L+ + + NNKL SI L L ++L GN ++ +
Sbjct: 116 NELRDTDSLI--HLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT-NTGGL-- 168
Query: 401 RCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSI-PMRLGDSTSLNIL 459
T L ++ +DL+ + + + I + I P + + S
Sbjct: 169 --TRLKKVNWIDLTGQKCV---NEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDG 223
Query: 460 ELGNNNLN 467
+
Sbjct: 224 CVLWELPV 231
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 16/175 (9%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184
L+ NL + + S L ++ + + + SL + T L+ L L
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHL 70
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVS 244
N + S L D+ +L+ L + N I L L L +N L
Sbjct: 71 SHNQIS--DLSPLKDLTKLEELSVNRNRLKNLNGI---PSACLSRLFLDNNELR---DTD 122
Query: 245 LFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKN 299
+L++L L + NN L +I + L KL L N+ T + L K
Sbjct: 123 SLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEIT-NT-GGLTRLKK 173
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184
+ + L+ L+LS N + SP + +L +L+ LS+ N+L + + L L L
Sbjct: 59 MQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVNRNRLKN--LNGIPSAC-LSRLFL 113
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVS 244
+N L +K L+ L N V LG L++L+ LDL N ++
Sbjct: 114 DNNELRD--TDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEIT---NTG 166
Query: 245 LFTNLQSLSYLDVSNNLLSGNIPPEISHLKKL 276
T L+ ++++D++ L
Sbjct: 167 GLTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 43/223 (19%), Positives = 80/223 (35%), Gaps = 26/223 (11%)
Query: 171 SQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDL 230
L +L S T ++ +++ + + + T L++L
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKEL 68
Query: 231 DLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSI 290
LS N +S +S +L L L V+ N L + L +L +L N+
Sbjct: 69 HLSHNQIS---DLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRL---FLDNNELR-DT 121
Query: 291 QSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLE 350
S L + KN L L S N+L + LG +++E + L+ N+ I
Sbjct: 122 DS-LIHLKN----LEIL-----SIRNNKLKSIVM--LGFLSKLEVLDLHGNE-ITNTG-G 167
Query: 351 VGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEI-NLDGNMLS 392
+ + +I L+ K + + + + DG +S
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS 210
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 50/249 (20%)
Query: 338 LNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIED 397
P + L ++ + + + N D + + ++
Sbjct: 4 QRPTPINQVFPDP--GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG 58
Query: 398 VFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLN 457
+ + L++L LS N ++ + + +L ++ L +N N + S L+
Sbjct: 59 M----QFFTNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLKN---LNGIPSACLS 109
Query: 458 ILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYR 517
L L NN L + + L L+ L + N L +I L +
Sbjct: 110 RLFLDNNEL--RDTDSLIHLKNLEILSIRNNKLK--------------SIVMLGFLSKLE 153
Query: 518 KFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNL- 576
DL N ++ L L ++L+G K L
Sbjct: 154 VLDLHGNEITNTGG-----------------LTRLKKVNWIDLTGQKCVNEPVKYQPELY 196
Query: 577 --NGLTNLD 583
N + + D
Sbjct: 197 ITNTVKDPD 205
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 43/194 (22%), Positives = 68/194 (35%), Gaps = 41/194 (21%)
Query: 395 IEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDST 454
I VF L+ K +L +T + L +Q +++ S+ + T
Sbjct: 9 INQVFP-DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLAG-MQFFT 63
Query: 455 SLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSH 514
+L L L +N + S + DL +L+ L ++ N L N+ + S
Sbjct: 64 NLKELHLSHNQI--SDLSPLKDLTKLEELSVNRNRLK--------------NLNGIP-SA 106
Query: 515 NYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFG 574
+ L N L L HL L++ NKL +V G
Sbjct: 107 CLSRLFLDNNELRDTDS-----------------LIHLKNLEILSIRNNKLKSIVM--LG 147
Query: 575 NLNGLTNLDLSYNE 588
L+ L LDL NE
Sbjct: 148 FLSKLEVLDLHGNE 161
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 34/198 (17%), Positives = 77/198 (38%), Gaps = 17/198 (8%)
Query: 327 LGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINL 386
+ + ++ + L++NQ I + + + + L+ + ++ N+L ++ S L + L
Sbjct: 59 MQFFTNLKELHLSHNQ-ISDLS-PLKDLTKLEELSVNRNRLK-NL--NGIPSACLSRLFL 113
Query: 387 DGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSI 446
D N L + + +L LE L + +N L +G L +++L L+ N +
Sbjct: 114 DNNELR-DTDSL----IHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNTG 166
Query: 447 PMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVN 506
L +N ++L + E + +L + + R I + S
Sbjct: 167 G--LTRLKKVNWIDLTGQKC---VNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYV 221
Query: 507 IPDLSYSHNYRKFDLSYN 524
+ + ++SY
Sbjct: 222 DGCVLWELPVYTDEVSYK 239
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAI---SYVPPE------YGRA 675
D+K+ NIL+ ++ + D GLA + + + + Y+PPE
Sbjct: 167 DLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNH 226
Query: 676 RKANERDNIYRFGVVLLELVIRKQPTGPKFEDK 708
++ ++Y FG++L E+ R G E +
Sbjct: 227 FQSYIMADMYSFGLILWEVARRCVSGGIVEEYQ 259
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 5e-10
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 617 GKTVAVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAI---SYVPPE-- 671
GK +D+K+ NIL+ ++ + D GLA I + Y+ PE
Sbjct: 164 GKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL 223
Query: 672 ----YGRARKANERDNIYRFGVVLLELVIRKQPTGP 703
+ ++ +R +IY G+V E+ R G
Sbjct: 224 DDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGI 259
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 625 DIKASNILL-----NEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE--YGRARK 677
D+++ NI L N AKV DFGL++ H + + ++ PE
Sbjct: 149 DLRSPNIFLQSLDENAPVCAKVADFGLSQQ----SVHSVSGLLGNFQWMAPETIGAEEES 204
Query: 678 ANERDNIYRFGVVLLELVIRKQP 700
E+ + Y F ++L ++ + P
Sbjct: 205 YTEKADTYSFAMILYTILTGEGP 227
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 601 IGGGGFGTVFKGT-MPDGKTVAVKKDIKASNILLNEDFDAKVLDF 644
IG GGFG V KG + D VA+K + + + K +F
Sbjct: 27 IGKGGFGLVHKGRLVKDKSVVAIKS-LILGDSEGETEMIEKFQEF 70
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 1e-09
Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 8/116 (6%)
Query: 354 CSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIED-VFGRCTNLSQLEKLD 412
+R + + L +E+L E+ ++ +E L +L L
Sbjct: 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDL---RGLGELRNLT 62
Query: 413 LSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLN 467
+ + L + + + L L+ N S+ + SL L L N L+
Sbjct: 63 IVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 3e-08
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 3/104 (2%)
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIR-LGELTRLQDLDLSDNLLSGSLTV 243
C+ + L + L L + +R L L L++L + + L +
Sbjct: 15 CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAP 73
Query: 244 SLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFT 287
F LS L++S N L ++ + L + L N
Sbjct: 74 DAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 6e-06
Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 27/128 (21%)
Query: 463 NNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLS 522
+ + L L + + + + +L R +
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHL---ELRDLR--GLGEL------RNLTIV 64
Query: 523 YNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNL 582
+ L + P + +LNLS N L L + L+ L L
Sbjct: 65 KSGLR-FVA--------------PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108
Query: 583 DLSYNEFD 590
LS N
Sbjct: 109 VLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 4e-04
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
Query: 127 DLSKLRVLNLS-QNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLC 185
L L + Q L + L L+ L++ ++ L P L L+L
Sbjct: 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88
Query: 186 SNSFTGEMPSELGDMKQLKSLDFSGNGFN 214
N+ + + L+ L SGN +
Sbjct: 89 FNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 17/169 (10%)
Query: 123 PLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---LTWL 179
+L+ + + + + + + + L ++ L+LG N+L + LT L
Sbjct: 35 VTQNELNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKL-----HDISALKELTNL 87
Query: 180 ETLSLCSNSFTGEMPSELGD-MKQLKSLDFSGNGFNGTVPIRL-GELTRLQDLDLSDNLL 237
L L N +P+ + D + LK L N ++P + +LT L L+L+ N L
Sbjct: 88 TYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQL 145
Query: 238 SGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQ 285
SL +F L +L+ LD+S N L ++P + L +L D L NQ
Sbjct: 146 Q-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ 192
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 25/219 (11%)
Query: 225 TRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGIN 284
+L ++ L S+ + +N+ + I +L + LG N
Sbjct: 19 AETIKANLKKKSVT---DAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGN 73
Query: 285 QFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFI 344
+ ++ K L L NQL K ++ + L NQ +
Sbjct: 74 KLH-----DIS---ALKE-LTNLT--YLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-L 121
Query: 345 GRIPLEVGNC-SMLKYIRLSNNKLSGSIPRELNDS-ESLVEINLDGNMLSGTIEDVFGRC 402
+P V + + L Y+ L++N+L S+P+ + D +L E++L N L E VF +
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK- 179
Query: 403 TNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSN 440
L+QL+ L L N L +P + L S+Q + L+ N
Sbjct: 180 --LTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 54/166 (32%), Positives = 68/166 (40%), Gaps = 36/166 (21%)
Query: 126 FD-LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---LTWLET 181
L+ L L L+ N L P+ L LK L L ENQL SLP GV LT L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPD--GVFDKLTNLTY 137
Query: 182 LSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRL-GELTRLQDLDLSDNLLSGS 240
L+L N QL+SL P + +LT L +LDLS N L S
Sbjct: 138 LNLAHN--------------QLQSL-----------PKGVFDKLTNLTELDLSYNQLQ-S 171
Query: 241 LTVSLFTNLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQ 285
L +F L L L + N L ++P + L L +L N
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNP 216
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 357 LKYIRLSNNKLSGSIP--RELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLS 414
++Y+ L NKL I +EL + L L GN L VF + L+ L++L L
Sbjct: 65 VRYLALGGNKLH-DISALKELTNLTYL---ILTGNQLQSLPNGVFDK---LTNLKELVLV 117
Query: 415 SNMLTGRIPKEIGN-LRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSIPE 472
N L +P + + L ++ L L N S+P + D T+L L+L N L S+PE
Sbjct: 118 ENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPE 174
Query: 473 KIAD-LAQLQFLDLSYNNL 490
+ D L QL+ L L N L
Sbjct: 175 GVFDKLTQLKDLRLYQNQL 193
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-07
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 12/161 (7%)
Query: 332 QMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDS-ESLVEINLDGNM 390
+ + L N+ + I + + L Y+ L+ N+L S+P + D +L E+ L N
Sbjct: 64 NVRYLALGGNK-LHDISA-LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQ 120
Query: 391 LSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRL 450
L + VF + L+ L L+L+ N L L ++ L L+ N S+P +
Sbjct: 121 LQSLPDGVFDK---LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGV 176
Query: 451 GDS-TSLNILELGNNNLNGSIPEKIAD-LAQLQFLDLSYNN 489
D T L L L N L S+P+ + D L LQ++ L ++N
Sbjct: 177 FDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWL-HDN 215
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 13/161 (8%)
Query: 334 ESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSG 393
L + + + I +N+ + S+ + ++ + L GN L
Sbjct: 22 IKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD 77
Query: 394 TIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS 453
L+ L L L+ N L L +++ L L N S+P + D
Sbjct: 78 I--SALKE---LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDK 131
Query: 454 -TSLNILELGNNNLNGSIPEKIAD-LAQLQFLDLSYNNLSR 492
T+L L L +N L S+P+ + D L L LDLSYN L
Sbjct: 132 LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS 171
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 49/236 (20%), Positives = 79/236 (33%), Gaps = 70/236 (29%)
Query: 358 KYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNM 417
L ++ N+ S+ +I + + + L + L L N
Sbjct: 22 IKANLKKKSVT-DAV-TQNELNSIDQIIANNSDI--KSVQGIQY---LPNVRYLALGGNK 74
Query: 418 LTGRIPKEIG---NLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSIPEK 473
L +I L ++ L L N S+P + D T+L L L N L S+P+
Sbjct: 75 LH-----DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDG 127
Query: 474 IAD-LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPK 532
+ D L L +L+L++N L +P FD
Sbjct: 128 VFDKLTNLTYLNLAHNQLQS--------------LPK-------GVFD------------ 154
Query: 533 ELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNE 588
L +L+ +L+LS N+L L F L L +L L N+
Sbjct: 155 ---------------KLTNLT---ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 625 DIKASNILLNEDFD--------AKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR 676
D+K+SNIL+ + + K+ DFGLAR A A +++ PE RA
Sbjct: 133 DLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTK---MSAAGAYAWMAPEVIRAS 189
Query: 677 KANERDNIYRFGVVLLELVIRKQP 700
++ +++ +GV+L EL+ + P
Sbjct: 190 MFSKGSDVWSYGVLLWELLTGEVP 213
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 625 DIKASNILLNEDFD-AKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDN 683
D+K N+LL K+ DFG A I ++H++ + SA +++ PE +E+ +
Sbjct: 130 DLKPPNLLLVAGGTVLKICDFGTACDI---QTHMTNNKGSA-AWMAPEVFEGSNYSEKCD 185
Query: 684 IYRFGVVLLELVIRKQP 700
++ +G++L E++ R++P
Sbjct: 186 VFSWGIILWEVITRRKP 202
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 6e-09
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR-KANERDN 683
D+K NI+L E+ K++D G I+ T + PE R +
Sbjct: 207 DLKPENIMLTEE-QLKLIDLGAVSRINSFGYLYGT-----PGFQAPE--IVRTGPTVATD 258
Query: 684 IYRFGVVLLELVIRKQP 700
IY G L L +
Sbjct: 259 IYTVGRTLAALTLDLPT 275
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASA----ISYVPPEYGRARK 677
+ KD+K+ N+ + + DFGL + ++ D + ++ PE R
Sbjct: 152 LHKDLKSKNVFYDNG-KVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLS 210
Query: 678 ANERDN---------IYRFGVVLLELVIRKQP 700
+ ++ ++ G + EL R+ P
Sbjct: 211 PDTEEDKLPFSKHSDVFALGTIWYELHAREWP 242
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 44/133 (33%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 132 RVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---LTWLETLSLCSNS 188
++L L N + +L LK L LG NQL +LP GV LT L L L +N
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPV--GVFDSLTQLTVLDLGTNQ 99
Query: 189 FTGEMPSELGD-MKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFT 247
T +PS + D + LK L N +P + LT L L L N L S+ F
Sbjct: 100 LT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFD 156
Query: 248 NLQSLSYLDVSNN 260
L SL++ + N
Sbjct: 157 RLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 7e-07
Identities = 33/136 (24%), Positives = 48/136 (35%), Gaps = 30/136 (22%)
Query: 358 KYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNM 417
+ + L +N+++ P + +L E+ L N L VF L+QL LDL +N
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---LTQLTVLDLGTNQ 99
Query: 418 LTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSIPEKIAD 476
LT +P + D L L + N L +P I
Sbjct: 100 LT-------------------------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER 133
Query: 477 LAQLQFLDLSYNNLSR 492
L L L L N L
Sbjct: 134 LTHLTHLALDQNQLKS 149
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-08
Identities = 48/160 (30%), Positives = 68/160 (42%), Gaps = 35/160 (21%)
Query: 132 RVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---LTWLETLSLCSNS 188
L+L N L P+ L L L LG N+L SLP+ GV LT L L+L +N
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPN--GVFNKLTSLTYLNLSTN- 86
Query: 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRL-GELTRLQDLDLSDNLLSGSLTVSLFT 247
QL+SL P + +LT+L++L L+ N L SL +F
Sbjct: 87 -------------QLQSL-----------PNGVFDKLTQLKELALNTNQLQ-SLPDGVFD 121
Query: 248 NLQSLSYLDVSNNLLSGNIPPEI-SHLKKLSDHYLGINQF 286
L L L + N L ++P + L L +L N +
Sbjct: 122 KLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPW 160
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 9e-07
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 358 KYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNM 417
Y+ L N L ++ SL ++ L GN L VF + T+ L L+LS+N
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS---LTYLNLSTNQ 87
Query: 418 LTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSIPEKIAD 476
L L ++ L LN+N S+P + D T L L L N L S+P+ + D
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 145
Query: 477 -LAQLQFLDLSYNN 489
L LQ++ L ++N
Sbjct: 146 RLTSLQYIWL-HDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 409 EKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLN 467
LDL +N L L S+ L L N S+P + + TSL L L N L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 468 GSIPEKIAD-LAQLQFLDLSYNNL 490
S+P + D L QL+ L L+ N L
Sbjct: 90 -SLPNGVFDKLTQLKELALNTNQL 112
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 6/78 (7%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA--NERD 682
N+ + D + D + S V Y P E+ A A
Sbjct: 219 HFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVT----YAPREFLNASTATFTHAL 274
Query: 683 NIYRFGVVLLELVIRKQP 700
N ++ G+ + + P
Sbjct: 275 NAWQLGLSIYRVWCLFLP 292
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 34/134 (25%)
Query: 132 RVLNLSQNLLFGQPSPQV-SNLKRLKMLSLGENQLSGSLPSQLGV---LTWLETLSLCSN 187
L L+ N L S + L L L L NQL+ + + ++ L L N
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEP--NAFEGASHIQELQLGEN 88
Query: 188 SFTGEMPSELGDMKQLKSLDFSGNG-FNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLF 246
++K + N F G L +L+ L+L DN +S + F
Sbjct: 89 --------------KIKEI---SNKMFLG--------LHQLKTLNLYDNQIS-CVMPGSF 122
Query: 247 TNLQSLSYLDVSNN 260
+L SL+ L++++N
Sbjct: 123 EHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 9e-07
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 337 WLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPRELNDS-ESLVEINLDGNMLSGT 394
LN+N+ + G L + L N+L+ I + + E+ L N +
Sbjct: 35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEI 93
Query: 395 IEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSN 440
+F L QL+ L+L N ++ + +L S+ L L SN
Sbjct: 94 SNKMFLG---LHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 409 EKLDLSSNMLTGRIPKEI-GNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNL 466
+L L+ N L + G L + L+L N I + + + L+LG N +
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90
Query: 467 NGSIPEKIAD-LAQLQFLDLSYNNLSR 492
I K+ L QL+ L+L N +S
Sbjct: 91 K-EISNKMFLGLHQLKTLNLYDNQISC 116
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 33/135 (24%)
Query: 358 KYIRLSNNKLSGSIPRELNDS-ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSN 416
+ L++N+L L LV++ L N L+G + F +++ + L L N
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE---LQLGEN 88
Query: 417 MLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSIPEKIA 475
+ I ++ L L L +N ++ +
Sbjct: 89 KIK-------------------------EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSF 122
Query: 476 D-LAQLQFLDLSYNN 489
+ L L L+L +N
Sbjct: 123 EHLNSLTSLNL-ASN 136
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDN- 683
+ + +++++ED A++ + S S A ++V PE + + +
Sbjct: 138 ALNSRSVMIDEDMTARISMADVKF------SFQSPGRMYAPAWVAPEALQKKPEDTNRRS 191
Query: 684 --IYRFGVVLLELVIRKQP 700
++ F V+L ELV R+ P
Sbjct: 192 ADMWSFAVLLWELVTREVP 210
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D++A+NIL+ E+ KV DFGLARLI D + I + PE + + ++
Sbjct: 305 DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDV 364
Query: 685 YRFGVVLLELV 695
+ FG++L EL
Sbjct: 365 WSFGILLTELT 375
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-08
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 32/132 (24%)
Query: 132 RVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---LTWLETLSLCSNS 188
L L N P ++SN K L ++ L N++S +L + +T L TL L N
Sbjct: 34 TELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRIS-TLSN--QSFSNMTQLLTLILSYN- 88
Query: 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTN 248
+L+ + F+G L L+ L L N +S + F +
Sbjct: 89 -------------RLRCI--PPRTFDG--------LKSLRLLSLHGNDIS-VVPEGAFND 124
Query: 249 LQSLSYLDVSNN 260
L +LS+L + N
Sbjct: 125 LSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 33/134 (24%)
Query: 358 KYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNM 417
+ L N+ + +P+EL++ + L I+L N +S F T L L LS N
Sbjct: 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT---LILSYNR 89
Query: 418 LTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLNGSIPEKIAD 476
L IP R D SL +L L N+++ +PE +
Sbjct: 90 LR-------------------------CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFN 123
Query: 477 -LAQLQFLDLSYNN 489
L+ L L + N
Sbjct: 124 DLSALSHLAI-GAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 204 KSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263
L GN F VP L L +DLS+N +S +L+ F+N+ L L +S N L
Sbjct: 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91
Query: 264 GNIPPEI-SHLKKLSDHYLGINQ 285
IPP LK L L N
Sbjct: 92 -CIPPRTFDGLKSLRLLSLHGND 113
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-06
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 409 EKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLN 467
+L L N T +PKE+ N + + ++ L++N + ++ + + T L L L N L
Sbjct: 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91
Query: 468 GSIPEKIAD-LAQLQFLDLSYNNLSR 492
IP + D L L+ L L N++S
Sbjct: 92 -CIPPRTFDGLKSLRLLSLHGNDISV 116
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 21/101 (20%)
Query: 110 QVLRTQSLKGPVSPLLFD-LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGS 168
L + + P L +++LS N + + SN+ +L L L N+L
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-C 92
Query: 169 LPSQLGV---LTWLETLSLCSNSFTGEMPSELGDMKQLKSL 206
+P L L LSL N + +
Sbjct: 93 IPP--RTFDGLKSLRLLSLHGN--------------DISVV 117
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 545 IPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
+P+ L + ++LS N++S L SF N+ L L LSYN
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 57/353 (16%), Positives = 112/353 (31%), Gaps = 63/353 (17%)
Query: 221 LGELTRLQDLDLSDNLLSGS----LTVSLFTNLQSLSYLDVSNNLLSGN--------IPP 268
+ LDLS N L L + S++ L++S N L +
Sbjct: 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77
Query: 269 EISHLKKLSDHYLGINQFTGSIQSELGNC-KNFKSVLAELQIFTFSAGMNQLSG----PL 323
+++ L L N + EL + L + G N S
Sbjct: 78 IPANVTSL---NLSGNFLSYKSSDELVKTLAAIPFTITVLDL-----GWNDFSSKSSSEF 129
Query: 324 PSWLGKWNQ-MESVWLNNNQF-------IGRIPLEVGNCSMLKYIRLSNNKLSGSIPREL 375
+ S+ L N + +I L + + + L N L+ EL
Sbjct: 130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQI-LAAIPAN-VNSLNLRGNNLASKNCAEL 187
Query: 376 -----NDSESLVEINLDGNML--SGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGN 428
+ S+ ++L N+L E + + + + L+L N L G + +
Sbjct: 188 AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247
Query: 429 L----RSIQILKLNSNFFNG-------SIPMRLGDSTSLNILELGNNNLNGSIPEKIAD- 476
L + +Q + L+ + ++ + + +++ ++ S I++
Sbjct: 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL 307
Query: 477 LAQLQFLDLSYNNLSRPILSKHSSYF---HEVNIPDLSYSHNYRKFDLSYNML 526
+ +L P L F H+ NI DL+ R+ + L
Sbjct: 308 IRELSG------KADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 50/350 (14%), Positives = 103/350 (29%), Gaps = 61/350 (17%)
Query: 121 VSPLLFDLSKLRVLNLSQNLLFGQPSPQV------SNLKRLKMLSLGENQLS----GSLP 170
V + L+LS N L S + + L+L N L L
Sbjct: 14 VEEFTSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72
Query: 171 SQLGVL-TWLETLSLCSNSFTGEMPSELGDM-----KQLKSLDFSGNGFNGTVPIRLGEL 224
L + + +L+L N + + EL + LD N F+ +
Sbjct: 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132
Query: 225 -----TRLQDLDLSDNLLSG----SLTVSLFTNLQSLSYLDVSNN--------LLSGNIP 267
+ L+L N L L L +++ L++ N L+ +
Sbjct: 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA 192
Query: 268 PEISHLKKLSDHYLGINQFTGSIQSELGNC-KNFKSVLAELQIFTFSAGMNQLSGP---- 322
+ + L L N +EL + + + L + +N L GP
Sbjct: 193 SIPASVTSL---DLSANLLGLKSYAELAYIFSSIPNHVVSLNL-----CLNCLHGPSLEN 244
Query: 323 LPSWLGKWNQMESVWLNNNQF--IGRIPLE-----VGNCSMLKYIRLSNNKLSGSIPREL 375
L +++V+L+ + + + + N + + + ++ S +
Sbjct: 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304
Query: 376 NDS-----ESLVEINLDGNMLSGTIEDVFGRC--TNLSQLEKLDLSSNML 418
++ +L L + +L + + L
Sbjct: 305 SNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 52/280 (18%), Positives = 83/280 (29%), Gaps = 50/280 (17%)
Query: 349 LEVGNCSMLKYIRLSNNKLSGSIPREL-----NDSESLVEINLDGNMLSGTIEDVFGR-- 401
S + + LS N L EL ++ +NL GN LS D +
Sbjct: 46 FANTPAS-VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL 104
Query: 402 CTNLSQLEKLDLSSNMLTGRIPKEIGNL-----RSIQILKLNSNFFNGSIPMRLGDS--- 453
+ LDL N + + E SI L L N L
Sbjct: 105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA 164
Query: 454 --TSLNILELGNNNLNGSIPEKIADL-----AQLQFLDLSYNNLSRPILSKHSSYFHEVN 506
++N L L NNL ++A A + LDLS N L ++ + F +
Sbjct: 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224
Query: 507 IPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLS 566
+ +L N L GP + L L + L + +
Sbjct: 225 N-------HVVSLNLCLNCLHGPSLENLKL-----------LKDSLKHLQTVYLDYDIVK 266
Query: 567 VLVP-------TSFGNLNGLTNLDLSYNEF--DGNNKFCE 597
+ +F N+ + +D + E +
Sbjct: 267 NMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 7e-08
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D++A+NIL+ E+ KV DFGLARLI D + I + PE + + ++
Sbjct: 388 DLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDV 447
Query: 685 YRFGVVLLELV 695
+ FG++L EL
Sbjct: 448 WSFGILLTELT 458
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 53.8 bits (128), Expect = 9e-08
Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 16/160 (10%)
Query: 119 GPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLS--LGENQLSGSLPSQLGVL 176
+SP+L + L L + NLK L+++S L ++ + L S L L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221
Query: 177 TWLETLSLCSNSFTGEMPSEL-------GDMKQLKSLDFSGNGFNGTVPIRLGE---LTR 226
L L + + + + LK L V E L +
Sbjct: 222 EKLV-LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280
Query: 227 LQDLDLSDNLLSGSLTVSLFTNLQSLS---YLDVSNNLLS 263
L+ +D+S +L+ L ++ + ++++ N LS
Sbjct: 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 50.0 bits (118), Expect = 1e-06
Identities = 23/154 (14%), Positives = 52/154 (33%), Gaps = 20/154 (12%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQV-----SNLKRLKMLSLGENQLSGSLPSQL------ 173
L+ L + L + NL++L + E+ +
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248
Query: 174 GVLTWLETLSLCSNSFTGEMPSELGD---MKQLKSLDFSGN--GFNGTVPI--RLGELTR 226
L+ L + + + + QL+++D S G + + ++
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308
Query: 227 LQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNN 260
L+ +++ N LS + L +L +DVS++
Sbjct: 309 LKFINMKYNYLSDEMKKELQKSLPMK--IDVSDS 340
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 3e-05
Identities = 25/187 (13%), Positives = 53/187 (28%), Gaps = 44/187 (23%)
Query: 321 GPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSES 380
L L + ++ + + N LK + + + L S+ ++ S
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPN---LKSLEIISGGLPDSVVEDILGS-- 216
Query: 381 LVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDL---SSNMLTGRIPKEI------GNLRS 431
+L LEKL L + +
Sbjct: 217 -----------------------DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253
Query: 432 IQILKLNSNFFNGSIPMRLGDS---TSLNILELGNNNLNGSIPEKIAD----LAQLQFLD 484
++ L + + +S L +++ L + D + L+F++
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313
Query: 485 LSYNNLS 491
+ YN LS
Sbjct: 314 MKYNYLS 320
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 9e-08
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+K +N+ L+ + K+ DFGLAR+++ S T V + Y+ PE NE+ +I
Sbjct: 141 DLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGT-PYYMSPEQMNRMSYNEKSDI 199
Query: 685 YRFGVVLLELVIRKQPTGPKFEDKDI 710
+ G +L EL P F
Sbjct: 200 WSLGCLLYELCALMPP----FTAFSQ 221
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
++ A N L+ E+ KV DFGL+RL++ I + PE K + + ++
Sbjct: 343 NLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDV 402
Query: 685 YRFGVVLLELV 695
+ FGV+L E+
Sbjct: 403 WAFGVLLWEIA 413
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 133 VLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGE 192
++ L+ L+ + + Q +N R + L L ++ + + L + + N
Sbjct: 1 MVKLTAELI--EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-- 55
Query: 193 MPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSL 252
+++LK+L + N L L +L L++N L + +L+SL
Sbjct: 56 KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115
Query: 253 SYLDVSNN 260
+YL + N
Sbjct: 116 TYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-07
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)
Query: 157 MLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGT 216
M+ L + + +Q L L + + + Q ++DFS N
Sbjct: 1 MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-- 55
Query: 217 VPIR-LGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKK 275
+ L RL+ L +++N + + L L L+ L ++NN L ++ L
Sbjct: 56 -KLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVE--LGDLDPLAS 111
Query: 276 L 276
L
Sbjct: 112 L 112
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 12/116 (10%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNL----KRLKMLSLGENQLSGSLPSQLGVLTWLE 180
+ + R L+L + P + NL + + +N++ L +L L+
Sbjct: 15 YTNAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLK 67
Query: 181 TLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPI-RLGELTRLQDLDLSDN 235
TL + +N + L L + N + L L L L + N
Sbjct: 68 TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 124 LLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183
L L + ++ S N + + L+RLK L + N++ L L L
Sbjct: 37 LGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94
Query: 184 LCSNSFT--GEMPSELGDMKQLKSLDFSGN 211
L +NS G++ L +K L L N
Sbjct: 95 LTNNSLVELGDL-DPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 11/149 (7%)
Query: 340 NNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVF 399
+ I + + N + + L K+ I + I+ N + ++
Sbjct: 5 TAELIEQAA-QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGF- 60
Query: 400 GRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG-SIPMRLGDSTSLNI 458
L +L+ L +++N + L + L L +N L SL
Sbjct: 61 ---PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117
Query: 459 LELGNN---NLNGSIPEKIADLAQLQFLD 484
L + N N I + Q++ LD
Sbjct: 118 LCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 32/131 (24%)
Query: 361 RLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTG 420
+L+ + + + ++ E++L G I + L Q + +D S N +
Sbjct: 3 KLTAELIEQA--AQYTNAVRDRELDLRGYK----IPVIENLGATLDQFDAIDFSDNEIR- 55
Query: 421 RIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQL 480
++ + L L + NN + L L
Sbjct: 56 ----KLDGFPLL---------------------RRLKTLLVNNNRICRIGEGLDQALPDL 90
Query: 481 QFLDLSYNNLS 491
L L+ N+L
Sbjct: 91 TELILTNNSLV 101
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+K SNI++ D K+LDFGLAR S + T Y PE E +I
Sbjct: 152 DLKPSNIVVKSDCTLKILDFGLARTAGT--SFMMTPYVVTRYYRAPEVILGMGYKENVDI 209
Query: 685 YRFGVVLLELVIRKQPTGPKFEDKDIV 711
+ G ++ E++ F D +
Sbjct: 210 WSVGCIMGEMIKGG----VLFPGTDHI 232
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-07
Identities = 5/81 (6%), Positives = 20/81 (24%), Gaps = 5/81 (6%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERD-- 682
++ +I+L++ + F + + +
Sbjct: 236 YLRPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMT 295
Query: 683 ---NIYRFGVVLLELVIRKQP 700
+ + G+ + + P
Sbjct: 296 FAFDTWTLGLAIYWIWCADLP 316
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 40/133 (30%), Positives = 54/133 (40%), Gaps = 33/133 (24%)
Query: 132 RVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGV---LTWLETLSLCSNS 188
L L N L P L +L LSL +NQ+ SLP GV LT L L L N
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPD--GVFDKLTKLTILYLHEN- 86
Query: 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRL-GELTRLQDLDLSDNLLSGSLTVSLFT 247
+L+SL P + +LT+L++L L N L S+ +F
Sbjct: 87 -------------KLQSL-----------PNGVFDKLTQLKELALDTNQLK-SVPDGIFD 121
Query: 248 NLQSLSYLDVSNN 260
L SL + + N
Sbjct: 122 RLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 409 EKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS-TSLNILELGNNNLN 467
+L+L SN L L + L L+ N S+P + D T L IL L N L
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89
Query: 468 GSIPEKIAD-LAQLQFLDLSYNNL 490
S+P + D L QL+ L L N L
Sbjct: 90 -SLPNGVFDKLTQLKELALDTNQL 112
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 385 NLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG 444
L+ N L VF + L+QL KL LS N + L + IL L+ N
Sbjct: 34 ELESNKLQSLPHGVFDK---LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ- 89
Query: 445 SIPMRLGDS-TSLNILELGNNNLNGSIPEKIAD-LAQLQFLDLSYNN 489
S+P + D T L L L N L S+P+ I D L LQ + L + N
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWL-HTN 134
|
| >4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
DIK+ NI L +D ++ DFG+AR+++ + + Y+ PE + N + +I
Sbjct: 150 DIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGT-PYYLSPEICENKPYNNKSDI 208
Query: 685 YRFGVVLLELVIRKQPTGPKFEDKDI 710
+ G VL EL K FE +
Sbjct: 209 WALGCVLYELCTLKHA----FEAGSM 230
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAIS-----------YVPPEYG 673
D+K SNI D KV DFGL + + + Y+ PE
Sbjct: 189 DLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQI 248
Query: 674 RARKANERDNIYRFGVVLLELVIRKQP 700
+ + +I+ G++L EL+
Sbjct: 249 HGNNYSHKVDIFSLGLILFELLYSFST 275
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 77/418 (18%), Positives = 135/418 (32%), Gaps = 62/418 (14%)
Query: 91 LAIANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQ-- 148
AIA ++L+EL LR + S +S + L LN+S L + S
Sbjct: 149 AAIAATCRNLKELDLR--ESDVDDVSGHW-LSHFPDTYTSLVSLNISC--LASEVSFSAL 203
Query: 149 ---VSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL--CSNSFTGEMPSELGDM--- 200
V+ LK L L L + L LE L + ++ S L
Sbjct: 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263
Query: 201 -KQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSN 259
K+L+ L + +P +RL L+LS + V L L L V +
Sbjct: 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323
Query: 260 NLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQL 319
+ + S K L L + + G+ +
Sbjct: 324 YIEDAGLEVLASTCKDL--RELRVFPSEPFVMEPNVALTE--------------QGLVSV 367
Query: 320 SGPLPSWLGKWNQMESVWLNNNQFIGRIPLE--VGNCSMLKYIRLSNNKLSGSIPRELND 377
S P ++ESV L + + L N + RL
Sbjct: 368 SMGCP-------KLESV-LYFCRQMTNAALITIARNRPNMTRFRLC-------------- 405
Query: 378 SESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIG-NLRSIQILK 436
+ D L + L +L L S +LT ++ + IG + +++L
Sbjct: 406 --IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL-SGLLTDKVFEYIGTYAKKMEMLS 462
Query: 437 L-NSNFFNGSIPMRLGDSTSLNILELGN-NNLNGSIPEKIADLAQLQFLDLSYNNLSR 492
+ + + + L SL LE+ + + ++ + L ++ L +S ++S
Sbjct: 463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 84 TLSRRLGLAIAN-ALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLF 142
+ RR+ L + N D++EL+L ++S +G + L + +L L+ L
Sbjct: 2 EMGRRIHLELRNRTPSDVKELVLD------NSRSNEGKLEGLTDEFEELEFLSTINVGL- 54
Query: 143 GQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTG-EMPSELGDMK 201
+ L +LK L L +N++SG L L L+L N L ++
Sbjct: 55 -TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE 113
Query: 202 QLKSLDFSGN 211
LKSLD
Sbjct: 114 NLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 5e-06
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 346 RIPLEVG--NCSMLKYIRLSNNKLSGSIPRELNDS-ESLVEINLDGNMLSGTIEDVFGRC 402
RI LE+ S +K + L N++ + L D E L ++ L+ +I ++
Sbjct: 6 RIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANL---- 60
Query: 403 TNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG-SIPMRLGDSTSLNILEL 461
L++L+KL+LS N ++G + ++ L L+ N S L +L L+L
Sbjct: 61 PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120
Query: 462 GNN---NLNGSIPEKIADLAQLQFLD 484
N NLN L QL +LD
Sbjct: 121 FNCEVTNLNDYRENVFKLLPQLTYLD 146
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Query: 151 NLKRLKMLSLGENQLS-GSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209
+K L L ++ + G L LE LS + T + L + +LK L+ S
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELS 72
Query: 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNN 260
N +G + + + L L+LS N + T+ L++L LD+ N
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 201 KQLKSLDFSGNGFN-GTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSN 259
+K L + N G + E L+ L + L+ +++ L L L++S+
Sbjct: 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---SIANLPKLNKLKKLELSD 73
Query: 260 NLLSGNIPPEISHLKKLSDHYLGINQFTG-SIQSELGNCKNFKS 302
N +SG + L+ L N+ S L +N KS
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 31/143 (21%)
Query: 448 MRLGDSTSLNILELGNNNLN-GSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVN 506
+R + + L L N+ N G + + +L+FL L+
Sbjct: 11 LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-------------- 56
Query: 507 IPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLS 566
I +L + +K +LS N +SG + +L+ LNLSGNK+
Sbjct: 57 IANLPKLNKLKKLELSDNRVSG------------GLEVLAEKCPNLT---HLNLSGNKIK 101
Query: 567 VL-VPTSFGNLNGLTNLDLSYNE 588
L L L +LDL E
Sbjct: 102 DLSTIEPLKKLENLKSLDLFNCE 124
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 5e-07
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 10/130 (7%)
Query: 84 TLSRRLGLAIAN-ALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLF 142
+ RR+ L + N + EL+L +S G + L + L L+L L
Sbjct: 9 DMKRRIHLELRNRTPAAVRELVLD------NCKSNDGKIEGLTAEFVNLEFLSLINVGL- 61
Query: 143 GQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTG-EMPSELGDMK 201
+ L +LK L L EN++ G L L L L+L N L ++
Sbjct: 62 -ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120
Query: 202 QLKSLDFSGN 211
LKSLD
Sbjct: 121 CLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 9e-06
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 151 NLKRLKMLSLGENQLS-GSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209
++ L L + + G + LE LSL + S L + +LK L+ S
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELS 79
Query: 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNN 260
N G + + +L L L+LS N L T+ L+ L LD+ N
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 10/137 (7%)
Query: 353 NCSMLKYIRLSNNKLSGSIPRELNDS-ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKL 411
+ ++ + L N K + L +L ++L L ++ + L +L+KL
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN----LPKLPKLKKL 76
Query: 412 DLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG-SIPMRLGDSTSLNILELGNN---NLN 467
+LS N + G + L ++ L L+ N S L L L+L N NLN
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136
Query: 468 GSIPEKIADLAQLQFLD 484
L QL +LD
Sbjct: 137 DYRESVFKLLPQLTYLD 153
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 202 QLKSLDFSGNGFN-GTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNN 260
++ L N G + E L+ L L + L +VS L L L++S N
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLELSEN 81
Query: 261 LLSGNIPPEISHLKKLSDHYLGINQFT 287
+ G + L L+ L N+
Sbjct: 82 RIFGGLDMLAEKLPNLTHLNLSGNKLK 108
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
DIK +N+ + K+ D GL R S + + V + Y+ PE N + +I
Sbjct: 161 DIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGT-PYYMSPERIHENGYNFKSDI 219
Query: 685 YRFGVVLLELVIRKQP 700
+ G +L E+ + P
Sbjct: 220 WSLGCLLYEMAALQSP 235
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 8e-07
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDN 683
+D+K SNI++ D K+LDFGLAR S + T Y PE E +
Sbjct: 188 RDLKPSNIVVKSDCTLKILDFGLARTAGT--SFMMTPYVVTRYYRAPEVILGMGYKENVD 245
Query: 684 IYRFGVVLLELVIRKQPTGPKFEDKDIV 711
I+ G ++ E+V K F +D +
Sbjct: 246 IWSVGCIMGEMVRHK----ILFPGRDYI 269
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+K SN+LLN D K+ DFGLAR+
Sbjct: 153 DLKPSNLLLNTTCDLKICDFGLARVADP 180
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE 671
D+K +N LLN+D KV DFGLAR I+ K + P
Sbjct: 154 DLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPH 200
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 10/98 (10%), Positives = 25/98 (25%), Gaps = 20/98 (20%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEY-----------G 673
++ +I+L++ + F + + PPE
Sbjct: 231 YLRPVDIVLDQRGGVFLTGFEHLVRDGARVVSSVS-----RGFEPPELEARRATISYHRD 285
Query: 674 RARKANERDNIYRFGVVLLELVIRKQPTGPKFEDKDIV 711
R + + G+V+ + P +
Sbjct: 286 RRTLMTFSFDAWALGLVIYWIWCADLP----ITKDAAL 319
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 23/142 (16%)
Query: 149 VSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDF 208
+S LK K L+L N + + S L + L LSL N ++ + L+ L
Sbjct: 44 LSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWI 100
Query: 209 SGNGFNGTVPIR----LGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG 264
S N I + +L L+ L +S+N ++ + L L L ++ N L
Sbjct: 101 SYNQ------IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154
Query: 265 NIPPE----------ISHLKKL 276
+ + L L
Sbjct: 155 DYKENNATSEYRIEVVKRLPNL 176
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 329 KWNQMESVWLNNN-QFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLD 387
+ E V L+ I ++ + K++ LS N + I L+ E+L ++L
Sbjct: 21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLG 78
Query: 388 GNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFN--GS 445
N++ IE++ LE+L +S N + + I L ++++L +++N G
Sbjct: 79 RNLIK-KIENLDAVADT---LEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGE 132
Query: 446 IPMRLGDSTSLNILELGNNNLNGSIPEK----------IADLAQLQFLD 484
I +L L L L N L E + L L+ LD
Sbjct: 133 I-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
Query: 362 LSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGR 421
+ + R+ + ++ L G + IE + + L + L LS+N + +
Sbjct: 6 TIKDAIRIFEERKSVVATEAEKVELHGMIPP--IEKMDATLSTLKACKHLALSTNNIE-K 62
Query: 422 IPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQ 481
I + + +++IL L N I + +L L + N + S+ I L L+
Sbjct: 63 I-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLR 118
Query: 482 FLDLSYNNLS 491
L +S N ++
Sbjct: 119 VLYMSNNKIT 128
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+K N+ +NED + K+LDFGLAR
Sbjct: 153 DLKPGNLAVNEDCELKILDFGLARQADS 180
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA 675
D+ NILL ++ D + DF LAR + T YV + RA
Sbjct: 159 DLHPGNILLADNNDITICDFNLAREDTA--DANKTH------YVTHRWYRA 201
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+K N+ +NED + K+LDFGLAR
Sbjct: 151 DLKPGNLAVNEDCELKILDFGLARHADA 178
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+K SN+L+N + D KV DFGLAR+I +
Sbjct: 137 DLKPSNLLINSNCDLKVCDFGLARIIDE 164
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE 671
D+K SNILLN + KV DFGL+R + + + S
Sbjct: 134 DMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENF 180
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 31/126 (24%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAIS-----------YVPPEYG 673
D+K SNI D KV DFGL + + + Y+ PE
Sbjct: 143 DLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQI 202
Query: 674 RARKANERDNIYRFGVVLLELV---------------IRKQPTGPKFED-----KDIVVG 713
+ + +I+ G++L EL+ +R P F +V
Sbjct: 203 HGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQD 262
Query: 714 CVSDNP 719
+S +P
Sbjct: 263 MLSPSP 268
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAI---SYVPPEYGRARKANER 681
D+K SNI L + K+ DFGL + + + Y+ PE ++ +
Sbjct: 147 DLKPSNIFLVDTKQVKIGDFGLVTSLKN-----DGKRTRSKGTLRYMSPEQISSQDYGKE 201
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKDIV 711
++Y G++L EL+ FE
Sbjct: 202 VDLYALGLILAELL---HVCDTAFETSKFF 228
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 10/52 (19%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA 675
+D+K SN+ +NED + K+LDFGLAR +D T YV + RA
Sbjct: 156 RDLKPSNLAVNEDCELKILDFGLARHTAD----EMTG------YVATRWYRA 197
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 6e-06
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD--CKSHISTDVASAISYVPPEYGRARKANERD 682
D+K SNIL+N + K+ DFG++ + D S + T SY+ PE + + +
Sbjct: 157 DVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGT-----RSYMSPERLQGTHYSVQS 211
Query: 683 NIYRFGVVLLELVIRKQP 700
+I+ G+ L+E+ + + P
Sbjct: 212 DIWSMGLSLVEMAVGRYP 229
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 7e-06
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
D+K +N L+N+D KV DFGLAR + ++ S S N +
Sbjct: 181 DLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLK 237
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 625 DIKASNILLNED-FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARK--ANER 681
DIK NIL++ + + K++DFG L+ D + + + Y PPE+ R +
Sbjct: 174 DIKDENILIDLNRGELKLIDFGSGALLKD--TVYTDFDGT-RVYSPPEWIRYHRYHGRSA 230
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKD 709
++ G++L ++V P FE +
Sbjct: 231 A-VWSLGILLYDMVCGDIP----FEHDE 253
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE--YGRARKANERD 682
D+K SNIL++++ K+ DFG + + D I + ++PPE + +
Sbjct: 177 DVKPSNILMDKNGRVKLSDFGESEYMVD--KKIKGSRGT-YEFMPPEFFSNESSYNGAKV 233
Query: 683 NIYRFGVVLLELVIRKQPTGPKFEDKD 709
+I+ G+ L + P F K
Sbjct: 234 DIWSLGICLYVMFYNVVP----FSLKI 256
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS--TDVASAISYVPPEYGRARKANERD 682
DIK N+LL + K+ DFG + + T + Y+PPE R +E+
Sbjct: 134 DIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGT-----LDYLPPEMIEGRMHDEKV 188
Query: 683 NIYRFGVVLLELVIRKQPTGPKFEDKDI 710
+++ GV+ E ++ K P FE
Sbjct: 189 DLWSLGVLCYEFLVGKPP----FEANTY 212
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKAN----E 680
DIK SN+L+ ED K+ DFG++ + +S V + +++ PE +
Sbjct: 162 DIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTP-AFMAPESLSETRKIFSGKA 220
Query: 681 RDNIYRFGVVLLELVIRKQPTGPKFEDKDIVV 712
D ++ GV L V + P F D+ I+
Sbjct: 221 LD-VWAMGVTLYCFVFGQCP----FMDERIMC 247
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAIS-------------YVPPE 671
D+K NI ++E + K+ DFGLA+ + + D + YV E
Sbjct: 141 DLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATE 200
Query: 672 --YGRARKANERDNIYRFGVVLLELV 695
G + D +Y G++ E++
Sbjct: 201 VLDGTGHYNEKID-MYSLGIIFFEMI 225
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 20/98 (20%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAI-----------SYVPPE-- 671
D+K N+LL+ K+ DFG A IS + + A+ Y PE
Sbjct: 163 DLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEII 222
Query: 672 --YGRARKANERDNIYRFGVVLLELVIRKQPTGPKFED 707
Y E+ +I+ G +L L R+ P FED
Sbjct: 223 DLYSN-FPIGEKQDIWALGCILYLLCFRQHP----FED 255
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS--TDVASAISYVPPEYGRARKANERD 682
DIK N+L+ + K+ DFG + + T + Y+PPE + +E+
Sbjct: 139 DIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGT-----LDYLPPEMIEGKTHDEKV 193
Query: 683 NIYRFGVVLLELVIRKQPTGPKFEDKDI 710
+++ GV+ E ++ P F+
Sbjct: 194 DLWCAGVLCYEFLVGMPP----FDSPSH 217
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 625 DIKASNILLN-EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARK--ANER 681
DIK NIL++ AK++DFG L+ D + + Y PPE+ + A
Sbjct: 164 DIKDENILIDLRRGCAKLIDFGSGALLHD--EPYTDFDGT-RVYSPPEWISRHQYHALPA 220
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKD 709
++ G++L ++V P FE
Sbjct: 221 T-VWSLGILLYDMVCGDIP----FERDQ 243
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D++A+NIL++ K+ DFGLAR+I D + I + PE + ++
Sbjct: 309 DLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDV 368
Query: 685 YRFGVVLLELV 695
+ FG++L+E+V
Sbjct: 369 WSFGILLMEIV 379
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 5e-05
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASA-ISYVPPEYGRARKANE 680
+ +D+ A NILL+E K+ DFGLAR I ++ A + ++ PE R
Sbjct: 215 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTI 274
Query: 681 RDNIYRFGVVLLELV 695
+ +++ FGV+L E+
Sbjct: 275 QSDVWSFGVLLWEIF 289
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 6e-05
Identities = 54/373 (14%), Positives = 114/373 (30%), Gaps = 38/373 (10%)
Query: 92 AIANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSN 151
IA + L + + + L G +L + +L++++ + +
Sbjct: 214 TIARNCRSLVSVKVGDFEIL----ELVGFFK-AAANLEEFCGGSLNEDIGMPEKYMNLVF 268
Query: 152 LKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSEL-GDMKQLKSLDFSG 210
++L L L + +P + L L E L L+ L+
Sbjct: 269 PRKLCRLGLSYMGPNE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327
Query: 211 NGFNGTVPIRLGELTRLQDLDLS-------DNLLSGSLT----VSLFTNLQSLSYLDVSN 259
+ + + +L+ L + G ++ ++L Q L Y+ V
Sbjct: 328 VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387
Query: 260 NLLS-------GNIPPEISHLKKLS-DHYLGINQFTG--SIQSELGNCKNFKSVLAELQI 309
+ ++ G + + + D I ++S L CK L+
Sbjct: 388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK-------LRR 440
Query: 310 FTFSAGMNQLSGPLPSWLGK-WNQMESVWLNNNQFIGRIPLEVG-NCSMLKYIRLSNNKL 367
F F L+ S++G+ + + L +E C L+ + +
Sbjct: 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500
Query: 368 S-GSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI 426
S +I + SL + + G S T +D+ +E + + +
Sbjct: 501 SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIR 560
Query: 427 GNLRSIQILKLNS 439
IL S
Sbjct: 561 EMEHPAHILAYYS 573
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
DI A N+L++ + K+ DFGL+R + D + ++ I ++ PE R+ ++
Sbjct: 516 DIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDV 575
Query: 685 YRFGVVLLELV 695
+ FGV + E++
Sbjct: 576 WMFGVCMWEIL 586
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+K N+ LNED + K+ DFGLA + + +Y+ PE + + ++
Sbjct: 140 DLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTP-NYIAPEVLSKKGHSFEVDV 198
Query: 685 YRFGVVLLELVIRKQPTGPKFEDKDI 710
+ G ++ L++ K P FE +
Sbjct: 199 WSIGCIMYTLLVGKPP----FETSCL 220
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 53/396 (13%), Positives = 118/396 (29%), Gaps = 86/396 (21%)
Query: 134 LNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEM 193
L+ + Q + NL L+ + +L L L+ F +
Sbjct: 7 LSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLD-HLFFHYEFQNQR 65
Query: 194 PSELGDMKQLKSLDFSGNGFNGTVPIRLGEL-----TRLQDLDLSDNLLSGSLTVSLFTN 248
S + L+ L+ +G + + L +++L+ L + +L
Sbjct: 66 FS-AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV 124
Query: 249 LQSLSYLDVSNN--------LLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNF 300
L + N L + + + L L N T
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTL---RLSNNPLT------------- 168
Query: 301 KSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQ-MESVWLNNNQFIGRIPLEVG------- 352
+AG+ L L N + + L + +G + G
Sbjct: 169 ------------AAGVAVLMEGLAG-----NTSVTHLSLLHTG-LG----DEGLELLAAQ 206
Query: 353 ---NCSMLKYIRLSNNKLSGS----IPRELNDSESLVEINLDGNMLSGT----IEDVFGR 401
N L+ + ++ N + + R + SL ++L N LS + D+ G
Sbjct: 207 LDRNRQ-LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGA 265
Query: 402 CTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILEL 461
+++ ++ E ++ ++ + +++ R+ L + +L
Sbjct: 266 AEGGARVVVSLTEGTAVS-----EYWSVILSEVQRNLNSWDRA----RVQRHLELLLRDL 316
Query: 462 GNNNLNGSIPEKIADLAQ----LQFLDLSYNNLSRP 493
++ P + A L + ++ L + P
Sbjct: 317 EDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSP 352
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 625 DIKASNILLN-EDFDAKVLDFGLARLISDCKSH 656
D+K +N+ +N ED K+ DFGLAR++ SH
Sbjct: 145 DLKPANLFINTEDLVLKIGDFGLARIMDPHYSH 177
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 625 DIKASNILLN-EDFDAKVLDFGLARLI--SDCKSHISTDVASAISYVPPEYGRARKANER 681
D+K NI + K+ D GLA L S K+ I T ++ PE K +E
Sbjct: 156 DLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGT-----PEFMAPEMYE-EKYDES 209
Query: 682 DNIYRFGVVLLELVIRKQP 700
++Y FG+ +LE+ + P
Sbjct: 210 VDVYAFGMCMLEMATSEYP 228
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE--YGRARKANERD 682
DIK NI++ EDF K++DFG A + T + I Y PE G + E +
Sbjct: 155 DIKDENIVIAEDFTIKLIDFGSAAYLER-GKLFYTFCGT-IEYCAPEVLMGNPYRGPELE 212
Query: 683 NIYRFGVVLLELVIRKQPTGPKFED-KDIVVG 713
++ GV L LV + P F + ++ V
Sbjct: 213 -MWSLGVTLYTLVFEENP----FCELEETVEA 239
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE 671
D+K NILL++D + K+ DFG + + + + SY+ PE
Sbjct: 149 DLKPENILLDDDMNIKLTDFGFSCQLDP-GEKLREVCGTP-SYLAPE 193
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+K N+ LNED + K+ DFGLA + + +Y+ PE + + ++
Sbjct: 166 DLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTP-NYIAPEVLSKKGHSFEVDV 224
Query: 685 YRFGVVLLELVIRKQPTGPKFEDKDI 710
+ G ++ L++ K P FE +
Sbjct: 225 WSIGCIMYTLLVGKPP----FETSCL 246
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+ A N L++ D KV DFG+ R + D
Sbjct: 129 DLAARNCLVDRDLCVKVSDFGMTRYVLD 156
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE--YGRARKANERD 682
D+KA N+LL+ D + K+ DFG + + + + Y PE G+ E D
Sbjct: 139 DLKAENLLLDADMNIKIADFGFSNEFTV-GGKLDAFCGAP-PYAAPELFQGKKYDGPEVD 196
Query: 683 NIYRFGVVLLELVIRKQPTGPKFEDKDI 710
++ GV+L LV P F+ +++
Sbjct: 197 -VWSLGVILYTLVSGSLP----FDGQNL 219
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+ SN+LL + + K+ DFGLA + T + +Y+ PE ++
Sbjct: 137 DLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGT-PNYISPEIATRSAHGLESDV 195
Query: 685 YRFGVVLLELVIRKQPTGPKFEDKDI 710
+ G + L+I + P F+ +
Sbjct: 196 WSLGCMFYTLLIGRPP----FDTDTV 217
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
DIK N+LL E+ + K++DFG++ +
Sbjct: 154 DIKGQNVLLTENAEVKLVDFGVSAQLDR 181
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+ A N L+ E K+ DFG++R +D
Sbjct: 238 DLAARNCLVTEKNVLKISDFGMSREEAD 265
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D++A+NIL+++ K+ DFGLARLI D
Sbjct: 134 DLRAANILVSDTLSCKIADFGLARLIED 161
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+ A N L+ E+ KV DFGL+RL++
Sbjct: 136 DLAARNCLVGENHLVKVADFGLSRLMTG 163
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASA---ISYVPPEYGRARKANER 681
D+ A N +L+E F KV DFGLAR I D + + A + + E + + +
Sbjct: 149 DLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTK 208
Query: 682 DNIYRFGVVLLELVIR-KQP 700
+++ FGV+L EL+ R P
Sbjct: 209 SDVWSFGVLLWELLTRGAPP 228
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+ A N+L+ K+ DFGLA+L+
Sbjct: 142 DLAARNVLVKTPQHVKITDFGLAKLLGA 169
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+ A N L+N+ KV DFGL+R + D
Sbjct: 145 DLAARNCLVNDQGVVKVSDFGLSRYVLD 172
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
DI NIL+ K+ DFGL+R I D
Sbjct: 138 DIAVRNILVASPECVKLGDFGLSRYIED 165
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYV--P----PEYGRARKA 678
+KAS+IL++ D + + V PE +
Sbjct: 153 SVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQ 212
Query: 679 --NERDNIYRFGVVLLELVIRKQP 700
+ + +IY G+ EL P
Sbjct: 213 GYDAKSDIYSVGITACELANGHVP 236
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+ A N L+ E+ KV DFG+ R + D
Sbjct: 129 DLAARNCLVGENQVIKVSDFGMTRFVLD 156
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE 671
D+K NILL+++ ++ DFG + + + + Y+ PE
Sbjct: 225 DLKPENILLDDNMQIRLSDFGFSCHLEP-GEKLRELCGTP-GYLAPE 269
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRARKANERD 682
D+ NIL+ + K+ DFGL +++ K + + S I + PE K +
Sbjct: 170 DLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVAS 229
Query: 683 NIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCV 715
+++ FGVVL EL + + + ++G
Sbjct: 230 DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGND 262
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRARKANERD 682
D+ NIL+ + K+ DFGL +++ K + S I + PE K +
Sbjct: 139 DLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVAS 198
Query: 683 NIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCV 715
+++ FGVVL EL + + + ++G
Sbjct: 199 DVWSFGVVLYELFTYIEKSKSPPAEFMRMIGND 231
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
DI A N+L++ + K+ DFGL+R + D
Sbjct: 141 DIAARNVLVSSNDCVKLGDFGLSRYMED 168
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+ A N+L++ + KV DFGL+R++ D
Sbjct: 176 DLAARNVLVDSNLVCKVSDFGLSRVLED 203
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 21/85 (24%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAI----SYVPPE-----YGRA 675
D+K +NI L K+ DFGL + + Y+ PE YG
Sbjct: 182 DVKPANIFLGPRGRCKLGDFGLLVELG------TAGAGEVQEGDPRYMAPELLQGSYG-- 233
Query: 676 RKANERDNIYRFGVVLLELVIRKQP 700
A D ++ G+ +LE+ +
Sbjct: 234 TAA---D-VFSLGLTILEVACNMEL 254
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDC---KSHISTDVASAISYVPPEYGRARKANER 681
D+ A N +L+E F KV DFGLAR + D H T + ++ E + +K +
Sbjct: 153 DLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTK 212
Query: 682 DNIYRFGVVLLELVIR-KQP 700
+++ FGV+L EL+ R P
Sbjct: 213 SDVWSFGVLLWELMTRGAPP 232
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 625 DIKASNILL---NEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE 671
D+K N+L N++ + K++DFG ARL + T + Y PE
Sbjct: 131 DLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTL-HYAAPE 179
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 4e-04
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASA--ISYVPPEYGRARKANERD 682
++ A N+LL AK+ DFGL++ + S+ + A + + PE RK + R
Sbjct: 461 NLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRS 520
Query: 683 NIYRFGVVLLELV 695
+++ +GV + E +
Sbjct: 521 DVWSYGVTMWEAL 533
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+ A N+L+ K+ DFGLA+L+
Sbjct: 142 DLAARNVLVKTPQHVKITDFGLAKLLGA 169
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+ A NIL+N + KV DFGL R++ D
Sbjct: 172 DLAARNILINSNLVCKVSDFGLGRVLED 199
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 625 DIKASNILL-NEDFDA---KVLDFGLARLISDCKSHISTDVASAISYVPPE------YGR 674
D+K SNIL +E + ++ DFG A+ + + T +A ++V PE Y
Sbjct: 141 DLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTA-NFVAPEVLERQGYDA 199
Query: 675 A 675
A
Sbjct: 200 A 200
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
++ A N+LL +V DFG+A L+
Sbjct: 140 NLAARNVLLKSPSQVQVADFGVADLLPP 167
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+ A NIL+N + KV DFGL+R++ D
Sbjct: 172 DLAARNILVNSNLVCKVSDFGLSRVLED 199
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+ A N+LL AK+ DFGL++ +
Sbjct: 142 DLAARNVLLVTQHYAKISDFGLSKALRA 169
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 6/144 (4%)
Query: 122 SPLLFDLSKLRVLNLSQN-LLFGQPSPQVSNLKRLKMLSLGENQLS-GSLPSQLGVLTWL 179
+ L V+ QP + + R++ + L + + +L L + L
Sbjct: 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120
Query: 180 ETLSLCSNSFTGEMPSELGDMKQLKSLDFSG-NGFNGTVPIRLGE-LTRLQDLDLSD--N 235
+ LSL + + + L L L+ SG +GF+ L +RL +L+LS +
Sbjct: 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180
Query: 236 LLSGSLTVSLFTNLQSLSYLDVSN 259
+ V++ ++++ L++S
Sbjct: 181 FTEKHVQVAVAHVSETITQLNLSG 204
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 27/106 (25%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVP----PEYGRARKANE 680
DIK+ +ILL D K+ DFG IS + V + P PE
Sbjct: 166 DIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGT-----PYWMAPEVISRSLYAT 220
Query: 681 RDNIYRFGVVLLELV-----------------IRKQPTGPKFEDKD 709
+I+ G++++E+V +R P PK ++
Sbjct: 221 EVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPP-PKLKNSH 265
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+ A N+LL AK+ DFGL++ +
Sbjct: 135 DLAARNVLLVNRHYAKISDFGLSKALGA 162
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASA---ISYVPPEYGRARKANER 681
D+ A N +L+E F KV DFGLAR + D + + A + ++ E + +K +
Sbjct: 217 DLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTK 276
Query: 682 DNIYRFGVVLLELVIR-KQP 700
+++ FGV+L EL+ R P
Sbjct: 277 SDVWSFGVLLWELMTRGAPP 296
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+K SNILL+E K+ DFG++ + D K+ A +Y+ PE R +
Sbjct: 150 DVKPSNILLDERGQIKLCDFGISGRLVDDKAK-DRSAGCA-AYMAPE--RIDPPDPTKPD 205
Query: 685 YRF-------GVVLLELVIRKQP 700
Y G+ L+EL + P
Sbjct: 206 YDIRADVWSLGISLVELATGQFP 228
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISD 652
D+ A N+LL K+ DFGL R +
Sbjct: 146 DLAARNLLLATRDLVKIGDFGLMRALPQ 173
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRARKANERD 682
D+ A N+LL+ D K+ DFGLA+ + + + + D S + + PE + K
Sbjct: 159 DLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYAS 218
Query: 683 NIYRFGVVLLELV 695
+++ FGV L EL+
Sbjct: 219 DVWSFGVTLYELL 231
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.93 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 99.93 | |
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.93 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 99.92 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 99.92 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.92 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.91 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 99.91 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 99.91 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 99.91 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.91 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.91 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 99.91 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.9 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.9 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.9 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 99.9 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.89 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 99.88 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.88 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.88 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.87 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.87 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.86 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.85 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.85 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.85 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 99.85 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 99.84 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.84 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.84 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.84 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.84 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.83 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.83 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.82 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 99.82 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 99.82 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 99.82 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 99.82 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.82 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 99.82 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 99.81 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.81 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 99.81 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.81 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.81 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 99.81 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 99.8 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 99.8 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 99.8 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 99.8 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 99.8 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 99.8 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 99.79 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 99.79 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.79 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 99.79 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 99.79 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 99.79 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 99.79 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 99.79 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 99.79 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 99.79 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 99.79 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 99.79 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 99.79 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 99.79 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 99.79 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 99.79 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 99.78 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 99.78 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 99.78 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 99.78 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 99.78 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.78 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 99.78 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 99.78 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 99.78 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 99.78 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 99.78 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 99.78 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 99.78 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 99.78 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 99.78 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 99.78 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 99.78 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 99.78 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 99.78 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 99.78 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.78 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 99.78 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 99.78 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.78 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 99.78 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 99.78 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 99.78 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 99.78 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 99.78 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 99.78 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 99.77 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 99.77 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 99.77 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 99.77 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 99.77 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 99.77 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 99.77 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 99.77 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 99.77 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.77 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 99.77 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 99.77 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 99.77 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 99.77 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.77 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 99.77 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.77 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 99.77 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 99.77 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 99.77 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 99.77 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 99.77 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 99.77 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 99.76 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 99.76 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.76 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 99.76 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 99.76 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 99.76 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 99.76 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 99.76 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 99.76 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 99.76 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 99.76 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 99.76 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 99.76 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 99.76 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 99.76 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 99.76 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 99.76 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.76 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 99.76 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 99.76 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 99.76 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 99.76 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 99.76 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 99.76 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 99.76 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 99.76 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 99.76 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 99.76 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 99.76 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 99.76 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 99.76 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 99.76 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 99.76 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 99.76 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 99.75 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.75 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 99.75 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.75 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 99.75 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 99.75 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 99.75 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 99.75 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 99.75 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 99.75 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 99.75 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.75 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 99.75 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.75 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 99.75 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 99.75 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 99.75 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.75 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.75 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 99.75 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 99.75 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 99.75 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.75 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 99.75 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 99.75 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.75 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 99.75 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 99.74 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 99.74 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.74 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 99.74 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 99.74 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 99.74 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 99.74 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 99.74 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 99.74 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 99.74 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 99.74 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.74 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.74 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 99.74 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 99.74 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 99.74 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 99.74 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 99.74 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 99.74 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 99.74 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.74 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.74 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 99.74 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 99.74 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 99.74 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 99.73 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 99.73 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 99.73 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 99.73 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 99.73 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.73 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 99.73 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 99.73 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.73 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 99.73 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 99.73 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.73 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 99.73 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 99.73 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.73 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 99.73 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 99.73 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 99.73 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 99.73 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 99.73 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 99.73 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.73 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 99.73 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.73 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.73 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 99.73 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 99.73 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 99.73 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 99.73 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 99.73 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 99.73 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 99.73 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 99.73 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 99.73 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 99.72 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 99.72 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 99.72 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 99.72 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 99.72 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 99.72 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 99.72 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.72 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 99.72 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.72 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.72 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 99.72 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.72 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.71 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.71 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 99.71 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 99.71 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 99.71 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 99.71 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 99.71 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 99.71 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.71 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.71 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.7 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 99.7 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 99.7 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 99.7 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.7 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 99.7 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.7 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.7 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 99.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.7 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 99.69 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 99.69 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 99.68 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.68 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 99.68 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 99.68 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 99.68 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.67 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.67 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.67 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.67 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.66 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.64 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.63 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.62 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.61 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.6 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.59 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.59 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.59 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.59 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.58 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 99.57 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.55 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.48 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.47 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 99.46 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.46 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.45 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.43 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.43 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.4 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.4 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.38 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.31 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.27 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.19 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.17 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.17 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.16 | |
| 2vuw_A | 336 | Serine/threonine-protein kinase haspin; cell cycle | 99.09 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.07 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.95 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.91 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.63 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.61 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.57 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.56 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 98.44 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.35 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.35 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.26 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.18 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.82 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.72 | |
| 1zar_A | 282 | RIO2 kinase; serine kinase, winged-helix, RIO doma | 97.65 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.84 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.8 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.27 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.14 | |
| 4gyi_A | 397 | RIO2 kinase; protein kinase, ADP complex, phosphoa | 95.96 | |
| 1zth_A | 258 | RIO1 serine protein kinase; ribosome biogenesis, r | 94.33 | |
| 3sg8_A | 304 | APH(2'')-ID; antibiotic resistance enzyme, transfe | 91.41 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-58 Score=546.07 Aligned_cols=470 Identities=32% Similarity=0.488 Sum_probs=400.4
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
..+++++++++|.+.+..+. ..+++|++|+|++|.+++.+|. ++++++|++|+|++|.+++.+|..++.+++|++|+
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp CTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred CCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 45677777777777765543 6778888888888888776665 77888888888888888877788888888888888
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCC-CCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGEL-TRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL 262 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 262 (729)
|++|++++.+|.. .+++|++|++++|.+++.+|..+..+ ++|++|++++|.+++.+| ..|..+++|++|++++|.+
T Consensus 254 Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 254 ISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNF 330 (768)
T ss_dssp CCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC-GGGGGCTTCCEEECCSSEE
T ss_pred CCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc-hHHhcCCCccEEECCCCcc
Confidence 8888887777664 77888888888888877788777765 888888888888876666 6678888888888888888
Q ss_pred cccCCcc-ccCCCcCCeeccccccccccccccccCCC-CcccccccceeEEEEccCCCCCCCcchhcCC--CCCCCEEEc
Q 046589 263 SGNIPPE-ISHLKKLSDHYLGINQFTGSIQSELGNCK-NFKSVLAELQIFTFSAGMNQLSGPLPSWLGK--WNQMESVWL 338 (729)
Q Consensus 263 ~~~~p~~-l~~l~~L~~l~l~~n~l~~~~~~~l~~l~-~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~--l~~L~~L~L 338 (729)
++.+|.. +..+++|+.++++.|.+++.+|..+..++ + +..++++.|.+.+.+|.+++. +++|++|++
T Consensus 331 ~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~---------L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS---------LLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTT---------CSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcC---------CcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 8777765 78888888888888888877777666554 3 467889999999888888887 889999999
Q ss_pred cCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcC
Q 046589 339 NNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNML 418 (729)
Q Consensus 339 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 418 (729)
++|++.+.+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|.+++.+|..+. .+++|++|++++|++
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM---YVKTLETLILDFNDL 478 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG---GCTTCCEEECCSSCC
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc---CCCCceEEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999998887764 567899999999999
Q ss_pred cccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcccccccc
Q 046589 419 TGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKH 498 (729)
Q Consensus 419 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~ 498 (729)
++.+|..+.++++|++|++++|++++.+|.+++.+++|++|+|++|++++.+|..+..+++|+.||+++|+++|.+|...
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cccccc----------------------------------------------------------cCCCCcccCCCCCeEe
Q 046589 499 SSYFHE----------------------------------------------------------VNIPDLSYSHNYRKFD 520 (729)
Q Consensus 499 ~~~~~~----------------------------------------------------------~~~~~~~~~~~l~~ld 520 (729)
...... .....+..+.+++.+|
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 421100 0011234457789999
Q ss_pred cCCCcCcccCCchhhccccc---------cccccccccccccCCceeeccCCcceeecccccccccccccccCCcccccC
Q 046589 521 LSYNMLSGPIPKELGSCVVV---------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 521 ls~N~l~g~~p~~~~~~~~l---------l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 591 (729)
+++|+++|.+|.+++.+..+ ++|.+|.+++++++|++||||+|+++|.+|..|..+++|++||+|+|+|+|
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 99999999999999887655 789999999999999999999999999999999999999999999999997
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=520.98 Aligned_cols=456 Identities=35% Similarity=0.505 Sum_probs=400.6
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
..+++++++++|.+.+.+|. +.++++|++|++++|.+++..|..++++++|++|+|++|++++.+|.. .+++|++|+
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~ 275 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence 56799999999999988877 999999999999999999999999999999999999999999888875 899999999
Q ss_pred eeccCCCccCCccccCC-CCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccc
Q 046589 184 LCSNSFTGEMPSELGDM-KQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL 262 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 262 (729)
|++|++++.+|..+.++ ++|++|+|++|.+++.+|..++++++|++|++++|.+++.+|...+..+++|++|++++|.+
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 99999999999999876 99999999999999999999999999999999999998889877799999999999999999
Q ss_pred cccCCccccCCC-cCCeeccccccccccccccccC--CCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEcc
Q 046589 263 SGNIPPEISHLK-KLSDHYLGINQFTGSIQSELGN--CKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLN 339 (729)
Q Consensus 263 ~~~~p~~l~~l~-~L~~l~l~~n~l~~~~~~~l~~--l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~ 339 (729)
++.+|..+..+. +|+.++++.|.+++.++..+.. ++. +..++++.|.+.+.+|.+++.+++|+.|+++
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~---------L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT---------LQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC---------CCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC---------ccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 999999999987 9999999999999888776654 333 4677888888888888899999999999999
Q ss_pred CCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCc
Q 046589 340 NNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLT 419 (729)
Q Consensus 340 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 419 (729)
+|++.+.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..+. ++++|++|+|++|+++
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS---NCTNLNWISLSNNRLT 503 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG---GCTTCCEEECCSSCCC
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh---cCCCCCEEEccCCccC
Confidence 9999888888888999999999999999988898899999999999999999888877664 4667888999999999
Q ss_pred ccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhh------------------------
Q 046589 420 GRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIA------------------------ 475 (729)
Q Consensus 420 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~------------------------ 475 (729)
+.+|.+++.+++|++|++++|++++.+|..++.+++|+.|++++|+++|.+|..+.
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 88999999999999999999999988999999999999999999988887776543
Q ss_pred ----------------------------------------------cCCCCCEEeCCCCcCcccccccccccccccCCCC
Q 046589 476 ----------------------------------------------DLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPD 509 (729)
Q Consensus 476 ----------------------------------------------~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~ 509 (729)
.+++|+.||+++|+++|.+|..+.
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~---------- 653 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG---------- 653 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG----------
T ss_pred cccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh----------
Confidence 246788899999999998887766
Q ss_pred cccCCCCCeEecCCCcCcccCCchhhccccc---------cccccccccccccCCceeeccCCcceeecccccccccccc
Q 046589 510 LSYSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLT 580 (729)
Q Consensus 510 ~~~~~~l~~ldls~N~l~g~~p~~~~~~~~l---------l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 580 (729)
.++.|+.||+++|+++|.+|..++.+..+ ++|.+|..+..++.|++||+|+|+++|.+|.. ..+..+.
T Consensus 654 --~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~ 730 (768)
T 3rgz_A 654 --SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFP 730 (768)
T ss_dssp --GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSC
T ss_pred --ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCC
Confidence 67788899999999999999988876654 78899999999999999999999999999964 2233444
Q ss_pred cccCCcc
Q 046589 581 NLDLSYN 587 (729)
Q Consensus 581 ~L~Ls~N 587 (729)
...+.+|
T Consensus 731 ~~~~~gN 737 (768)
T 3rgz_A 731 PAKFLNN 737 (768)
T ss_dssp GGGGCSC
T ss_pred HHHhcCC
Confidence 4444444
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=459.77 Aligned_cols=470 Identities=19% Similarity=0.163 Sum_probs=332.7
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
...++++++++|.+++..|..+.++++|++|+|++|+++++.|.+|+++++|++|+|++|++++..|..|+.+++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 34688999999999987788999999999999999999999999999999999999999999988899999999999999
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCC--EEEccccc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLS--YLDVSNNL 261 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~--~L~Ls~N~ 261 (729)
+++|++++..|..++++++|++|++++|.+++..+..+..+++|++|++++|.++ .++...|..+++|+ .|++++|.
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCc
Confidence 9999999877888999999999999999998755455556999999999999998 45557889999999 89999999
Q ss_pred ccccCCccccCCCcCCeeccccccccccccccc----------cCCCC---------cccccccceeEEEEccCCCCCCC
Q 046589 262 LSGNIPPEISHLKKLSDHYLGINQFTGSIQSEL----------GNCKN---------FKSVLAELQIFTFSAGMNQLSGP 322 (729)
Q Consensus 262 l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l----------~~l~~---------l~~~l~~l~l~~l~l~~n~l~~~ 322 (729)
+++..|..+.. ..|+.++++.|.........+ ..+.. ....+....+..++++.|.+.+.
T Consensus 191 l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 191 IAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred cCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 99877766544 567777776654110000000 00000 00111223567777788887777
Q ss_pred cchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCcccccccc
Q 046589 323 LPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRC 402 (729)
Q Consensus 323 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 402 (729)
.+..+..+++|++|++++|++. .+|..+..+++|++|++++|++++..|..+..+++|+.|++++|.+.+.++.. .+
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~ 346 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG--CL 346 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS--TT
T ss_pred CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh--hh
Confidence 7777777888888888888776 56677777788888888888887766777777778888888877776544432 12
Q ss_pred CCCCCCcEEEcCCCcCcccC--CcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCch-hhhcCCC
Q 046589 403 TNLSQLEKLDLSSNMLTGRI--PKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPE-KIADLAQ 479 (729)
Q Consensus 403 ~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~ 479 (729)
..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++..|. .+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 45566777777777776554 56667777777777777777666666677777777777777777655443 3666777
Q ss_pred CCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccC---Cchhhccccc---------ccccccc
Q 046589 480 LQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPI---PKELGSCVVV---------LTGYIPR 547 (729)
Q Consensus 480 L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~---p~~~~~~~~l---------l~g~ip~ 547 (729)
|+.|++++|.+++..+..+. .+++|+.|++++|++++.. +..+..+..+ +++..|.
T Consensus 427 L~~L~l~~n~l~~~~~~~~~------------~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFD------------GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTT------------TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred CCEEECCCCccCCcCHHHHh------------CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh
Confidence 77777777776654433322 3444555555555554311 1222222111 3334455
Q ss_pred ccccccCCceeeccCCcceeecccccccccccccccCCcccccC
Q 046589 548 SLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 548 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 591 (729)
.|..+++|+.|+|++|++++.+|..|..++.| .|++++|++++
T Consensus 495 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 56666666666666666666666666666666 66666666654
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=448.66 Aligned_cols=463 Identities=22% Similarity=0.205 Sum_probs=382.6
Q ss_pred EEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccC
Q 046589 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188 (729)
Q Consensus 109 ~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 188 (729)
.++.++..++ .+|..+. +++++|||++|.++++.+.+|+++++|++|+|++|++++..|..|+++++|++|+|++|+
T Consensus 16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 4566666666 4665554 379999999999999999999999999999999999998889999999999999999999
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCc
Q 046589 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPP 268 (729)
Q Consensus 189 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 268 (729)
+++..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+++ ++...+..+++|++|++++|.+++..|.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccccChh
Confidence 999999999999999999999999997778889999999999999999984 4334455699999999999999988888
Q ss_pred cccCCCcCC--eeccccccccccccccccCCCCccc--------------ccccceeEEEEccCC---CCCCCcchhcCC
Q 046589 269 EISHLKKLS--DHYLGINQFTGSIQSELGNCKNFKS--------------VLAELQIFTFSAGMN---QLSGPLPSWLGK 329 (729)
Q Consensus 269 ~l~~l~~L~--~l~l~~n~l~~~~~~~l~~l~~l~~--------------~l~~l~l~~l~l~~n---~l~~~~p~~l~~ 329 (729)
.++.+++|+ .++++.|.+++..+..+.. ..+.. .+....+..+..... ......+..+..
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 999999999 8899999998776655432 11110 011111222221110 001111222222
Q ss_pred CC--CCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCC
Q 046589 330 WN--QMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQ 407 (729)
Q Consensus 330 l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 407 (729)
+. +++.|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..+..+ ..+++
T Consensus 251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~ 326 (606)
T 3t6q_A 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA---SNFPS 326 (606)
T ss_dssp GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCG---GGCTT
T ss_pred hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhh---hccCc
Confidence 22 7899999999999888888999999999999999998 688889999999999999999998777665 45678
Q ss_pred CcEEEcCCCcCcccCCc-ccCCCCCCCEEEccCCcccccc--CcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEe
Q 046589 408 LEKLDLSSNMLTGRIPK-EIGNLRSIQILKLNSNFFNGSI--PMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLD 484 (729)
Q Consensus 408 L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~Ld 484 (729)
|++|++++|.+.+.+|. .+..+++|++|++++|.+++.. +..+..+++|+.|++++|++++..|..+..+++|+.|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 99999999999876655 5999999999999999998766 78899999999999999999999999999999999999
Q ss_pred CCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccc---------ccc-c--cccccccc
Q 046589 485 LSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV---------LTG-Y--IPRSLGHL 552 (729)
Q Consensus 485 Ls~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~l---------l~g-~--ip~~~~~l 552 (729)
+++|++++..+... +..+++|+.|++++|.+++..|..++.+..+ +++ . .+..+..+
T Consensus 407 l~~n~l~~~~~~~~-----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 407 LAFTRLKVKDAQSP-----------FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp CTTCCEECCTTCCT-----------TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred CCCCcCCCcccchh-----------hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence 99999986544321 2367889999999999999888877655443 333 1 23568899
Q ss_pred cCCceeeccCCcceeecccccccccccccccCCcccccC
Q 046589 553 SCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 553 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 591 (729)
++|++|++++|++++.+|..|..+++|+.|++++|++++
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 999999999999999999999999999999999999987
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=446.77 Aligned_cols=467 Identities=22% Similarity=0.198 Sum_probs=288.6
Q ss_pred CCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEe
Q 046589 105 LRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184 (729)
Q Consensus 105 ~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L 184 (729)
.+++++++++|.+++..+..+.++++|++|+|++|.+++..|..|+++++|++|+|++|++++..+..|+++++|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 45778888888888766667888888888888888888888888888888888888888888555556888888888888
Q ss_pred eccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhc--cCCCCCEEEcccccc
Q 046589 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFT--NLQSLSYLDVSNNLL 262 (729)
Q Consensus 185 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~Ls~N~l 262 (729)
++|++++..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+++ ++...+. .+++|++|++++|.+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHhhccccccccEEECCCCcc
Confidence 8888887777788888888888888888887777788888888888888888874 4434443 457888888888888
Q ss_pred cccCCccccCCCcC---------------------------CeeccccccccccccccccCCCCcccccccceeEEEEcc
Q 046589 263 SGNIPPEISHLKKL---------------------------SDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAG 315 (729)
Q Consensus 263 ~~~~p~~l~~l~~L---------------------------~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~ 315 (729)
++..|..+..+.+| +.++++.|.+++..+..+..++. ..+..++++
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~-------~~L~~L~Ls 256 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW-------TNLTMLDLS 256 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG-------SCCCEEECT
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc-------CCCCEEECC
Confidence 87777766655444 44444444444444433333221 114566666
Q ss_pred CCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCC-----CCcc----cccCCCCCcEEEc
Q 046589 316 MNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG-----SIPR----ELNDSESLVEINL 386 (729)
Q Consensus 316 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-----~~p~----~~~~l~~L~~L~L 386 (729)
.|.+.+..|.+++.+++|++|++++|++.+..|..+..+++|++|++++|...+ .+|. .+..+++|+.|++
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l 336 (680)
T 1ziw_A 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEEC
T ss_pred CCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEEC
Confidence 666666666666666777777777776666655555555555555555443322 1111 3444445555555
Q ss_pred CCCCCCCCccccccccCC-------------------------CCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCc
Q 046589 387 DGNMLSGTIEDVFGRCTN-------------------------LSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNF 441 (729)
Q Consensus 387 ~~N~l~~~~~~~~~~~~~-------------------------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 441 (729)
++|.+++..+..|..+.+ .++|+.|++++|++++..|..+..+++|++|++++|.
T Consensus 337 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp CSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc
Confidence 555544444333321111 1245555555555555555566666666666666666
Q ss_pred cccccC-cCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcc--cccccccccccccCCCCcccCCCCCe
Q 046589 442 FNGSIP-MRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSR--PILSKHSSYFHEVNIPDLSYSHNYRK 518 (729)
Q Consensus 442 l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~--~~~~~~~~~~~~~~~~~~~~~~~l~~ 518 (729)
+++.+| ..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++ .+|.. +..+.+|+.
T Consensus 417 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~------------~~~l~~L~~ 484 (680)
T 1ziw_A 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP------------FQPLRNLTI 484 (680)
T ss_dssp CEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT------------TTTCTTCCE
T ss_pred CccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc------------cccCCCCCE
Confidence 655444 455555666666666666555555555555555555555555431 22221 224455555
Q ss_pred EecCCCcCcccCCchhhccccc---------cccc--------cccccccccCCceeeccCCcceeeccccccccccccc
Q 046589 519 FDLSYNMLSGPIPKELGSCVVV---------LTGY--------IPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTN 581 (729)
Q Consensus 519 ldls~N~l~g~~p~~~~~~~~l---------l~g~--------ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 581 (729)
|++++|++++..|..+..+..+ +++. .+..|.++++|++|+|++|+++.+.+..|.++++|+.
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 5555555554444333332221 1111 1123566667777777777777555556677777777
Q ss_pred ccCCcccccC
Q 046589 582 LDLSYNEFDG 591 (729)
Q Consensus 582 L~Ls~N~l~g 591 (729)
|++++|++++
T Consensus 565 L~Ls~N~l~~ 574 (680)
T 1ziw_A 565 IDLGLNNLNT 574 (680)
T ss_dssp EECCSSCCCC
T ss_pred eECCCCCCCc
Confidence 7777776664
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=440.41 Aligned_cols=470 Identities=23% Similarity=0.189 Sum_probs=262.6
Q ss_pred CCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEe
Q 046589 105 LRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184 (729)
Q Consensus 105 ~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L 184 (729)
.+++++++++|.+.+..|..+.++++|++|+|++|.++++++..|+++++|++|+|++|++++..|..|+.+++|++|+|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 44566666666666555555666666666666666666655555666666666666666666555556666666666666
Q ss_pred eccCCCccCCccccCCCCCcEEEccCCCCCCCCccccC--CCCCCCeeeccCCcCCCCCChhhhccC-------------
Q 046589 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLG--ELTRLQDLDLSDNLLSGSLTVSLFTNL------------- 249 (729)
Q Consensus 185 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~~l------------- 249 (729)
++|.+++..|..+.++++|++|++++|.+++..+..++ .+++|++|++++|.+++..+ ..|..+
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT-TGGGGSSEECEEECTTCCC
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh-hhhhhhhhhhhhhcccccc
Confidence 66666666666666666666666666666655444433 34566666666666553222 222211
Q ss_pred --------------CCCCEEEcccccccccCCccccCCCc--CCeeccccccccccccccccCCCCcccc----------
Q 046589 250 --------------QSLSYLDVSNNLLSGNIPPEISHLKK--LSDHYLGINQFTGSIQSELGNCKNFKSV---------- 303 (729)
Q Consensus 250 --------------~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~l~l~~n~l~~~~~~~l~~l~~l~~~---------- 303 (729)
++|+.|++++|.+++..|..+..++. |+.++++.|.+++..+..+..++++...
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence 33444444444444444444444433 5555555554444444444333332100
Q ss_pred ----cccc-eeEEEEccCCCCCC-----Ccch----hcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCC
Q 046589 304 ----LAEL-QIFTFSAGMNQLSG-----PLPS----WLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG 369 (729)
Q Consensus 304 ----l~~l-~l~~l~l~~n~l~~-----~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 369 (729)
+..+ .+..++++.|...+ .+|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 367 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh
Confidence 0000 02334444333222 2222 45566777777777777776666667777777766666665332
Q ss_pred CC--cccccC--CCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCC-cccCCCCCCCEEEccCCcccc
Q 046589 370 SI--PRELND--SESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIP-KEIGNLRSIQILKLNSNFFNG 444 (729)
Q Consensus 370 ~~--p~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~ 444 (729)
.. +..+.. .++|+.|++++|++++..+..| ..+++|++|++++|.+++.+| ..+.++++|++|++++|++.+
T Consensus 368 ~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAF---SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp CEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred hhcchhhhcccccCcCceEECCCCCCCeEChhhh---hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence 11 111111 1345555555555555444443 345566677777777765544 566667777777777776665
Q ss_pred ccCcCccCCCCCCEEEcccccCC--ccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecC
Q 046589 445 SIPMRLGDSTSLNILELGNNNLN--GSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLS 522 (729)
Q Consensus 445 ~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls 522 (729)
..+..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..+..+ ..+.+|+.|+++
T Consensus 445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~------------~~l~~L~~L~Ls 512 (680)
T 1ziw_A 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML------------EGLEKLEILDLQ 512 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT------------TTCTTCCEEECC
T ss_pred eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh------------ccccccCEEeCC
Confidence 55555556666666666666554 3455555666666666666666553222111 133444555555
Q ss_pred CCcCcccCCc--------hhhccccc---------cccccc-cccccccCCceeeccCCcceeecccccccccccccccC
Q 046589 523 YNMLSGPIPK--------ELGSCVVV---------LTGYIP-RSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDL 584 (729)
Q Consensus 523 ~N~l~g~~p~--------~~~~~~~l---------l~g~ip-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 584 (729)
+|++++..+. .+..+..+ ++ .+| ..|.++++|+.|||++|+++++.+..|.++++|+.|++
T Consensus 513 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 591 (680)
T 1ziw_A 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591 (680)
T ss_dssp SSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEEC
Confidence 5554432111 01111111 12 344 35788889999999999999888888888999999999
Q ss_pred CcccccC
Q 046589 585 SYNEFDG 591 (729)
Q Consensus 585 s~N~l~g 591 (729)
++|++++
T Consensus 592 ~~N~l~~ 598 (680)
T 1ziw_A 592 QKNLITS 598 (680)
T ss_dssp TTSCCCB
T ss_pred CCCcCCc
Confidence 9998886
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=442.46 Aligned_cols=462 Identities=21% Similarity=0.186 Sum_probs=305.9
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
..+++.+++++|.+++..+..+.++++|++|+|++|.++++.+.+|+++++|++|+|++|++++..|..|+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 45689999999999987777999999999999999999999999999999999999999999988899999999999999
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCCCCC-CCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCC----CEEEcc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNG-TVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSL----SYLDVS 258 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L----~~L~Ls 258 (729)
|++|++++..|..|+++++|++|++++|.+++ .+|..++++++|++|++++|.+++ ++...|..+++| .+|+++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeecc
Confidence 99999998887899999999999999999986 579999999999999999999985 444556665555 489999
Q ss_pred cccccccCCccccCCCcCCeeccccccccc-cccccccCCCCccc-----------------------ccccceeEEEEc
Q 046589 259 NNLLSGNIPPEISHLKKLSDHYLGINQFTG-SIQSELGNCKNFKS-----------------------VLAELQIFTFSA 314 (729)
Q Consensus 259 ~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~-~~~~~l~~l~~l~~-----------------------~l~~l~l~~l~l 314 (729)
+|.+++..+..+... +|+.++++.|.+++ ..+..+.+++.+.. .+..+.+..+.+
T Consensus 190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 999997665555544 89999999998763 23333333333221 112223344444
Q ss_pred -cCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCC
Q 046589 315 -GMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSG 393 (729)
Q Consensus 315 -~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 393 (729)
..+.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|++|++++|++ +.+| .+ .+++|+.|++++|...+
T Consensus 269 ~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 269 TYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp CCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCE
T ss_pred cccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCcc
Confidence 44555555554 555566666666666654 233 455556666666666666 3444 23 55555555555553322
Q ss_pred CccccccccCCCCCCcEEEcCCCcCccc--CCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCc
Q 046589 394 TIEDVFGRCTNLSQLEKLDLSSNMLTGR--IPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIP 471 (729)
Q Consensus 394 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 471 (729)
.. .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++++..|
T Consensus 343 ~~-----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 343 SF-----KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp EC-----CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred ch-----hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccC
Confidence 11 123344555555555555443 24445555555555555555542 34445555555555555555554444
Q ss_pred -hhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCccc-CCchhhccccc---------
Q 046589 472 -EKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGP-IPKELGSCVVV--------- 540 (729)
Q Consensus 472 -~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~-~p~~~~~~~~l--------- 540 (729)
..+..+++|++|++++|.+++..|..+. .+++|+.|++++|++++. +|..++.+..+
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFL------------GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTT------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred hhhhhccccCCEEECcCCCCCccchhhhc------------CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 3455555555555555555443332221 334444455555544432 23332222111
Q ss_pred cccccccccccccCCceeeccCCcceeecccccccccccccccCCcccccC
Q 046589 541 LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 541 l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 591 (729)
+++..|..+..+++|++|+|++|++++.+|..|.++++|+.|++++|+++.
T Consensus 485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence 233455667777788888888888888778888888888888888887764
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-46 Score=442.31 Aligned_cols=463 Identities=21% Similarity=0.203 Sum_probs=339.5
Q ss_pred hcCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCC-CCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcE
Q 046589 103 LLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFG-QPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLET 181 (729)
Q Consensus 103 ~~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~ 181 (729)
.+.+++.|+|++|.+++..+..+.++++|++|||++|...+ +.+.+|+++++|++|+|++|.+++..|+.|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 36778999999999998888899999999999999996554 45788999999999999999999888999999999999
Q ss_pred EEeeccCCCccCCcc--ccCCCCCcEEEccCCCCCCCCc-cccCCCCCCCeeeccCCcCCCCCChhhhccC--CCCCEEE
Q 046589 182 LSLCSNSFTGEMPSE--LGDMKQLKSLDFSGNGFNGTVP-IRLGELTRLQDLDLSDNLLSGSLTVSLFTNL--QSLSYLD 256 (729)
Q Consensus 182 L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l--~~L~~L~ 256 (729)
|+|++|.+++.+|.. |.++++|++|+|++|.+++..+ ..|+++++|++|++++|.+++..+ ..+..+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~-~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE-HELEPLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS-GGGHHHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH-HHcccccCCccceEE
Confidence 999999999867665 9999999999999999987655 579999999999999999985554 666666 8999999
Q ss_pred cccccccccCCccccCCCc------CCeeccccccccccccccccCCCC---ccc-----------------------cc
Q 046589 257 VSNNLLSGNIPPEISHLKK------LSDHYLGINQFTGSIQSELGNCKN---FKS-----------------------VL 304 (729)
Q Consensus 257 Ls~N~l~~~~p~~l~~l~~------L~~l~l~~n~l~~~~~~~l~~l~~---l~~-----------------------~l 304 (729)
+++|.+.+..|..++.+.+ |+.++++.|.+++..+..+..... +.. .+
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 9999999888887777665 999999999988777665543211 000 00
Q ss_pred c---cceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCC
Q 046589 305 A---ELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESL 381 (729)
Q Consensus 305 ~---~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 381 (729)
. ...+..++++.|.+.+..|..+..+++|+.|++++|++.+..|..|..+++|++|+|++|++++..|..+..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 0 1235667777777777667777777777777777777777777777777777777777777777777777777777
Q ss_pred cEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEc
Q 046589 382 VEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILEL 461 (729)
Q Consensus 382 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 461 (729)
+.|++++|.+.+..+..| ..+++|++|+|++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|++
T Consensus 341 ~~L~L~~N~i~~~~~~~~---~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~l 408 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTF---KFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHL 408 (844)
T ss_dssp CEEECCSCCCCCCCSSCS---CSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEEC
T ss_pred CEEECCCCCCCccChhhh---cCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeec
Confidence 777777777776665544 4456677777777777642 22677777777777776 44433 356777788
Q ss_pred ccccCCccC-chhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccC-----Cchhh
Q 046589 462 GNNNLNGSI-PEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPI-----PKELG 535 (729)
Q Consensus 462 s~N~l~~~~-p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~-----p~~~~ 535 (729)
++|++++.. +..+..+++|+.|++++|++++..+... +..+++|+.|++++|.+++.. |..+.
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----------~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-----------PSENPSLEQLFLGENMLQLAWETELCWDVFE 477 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS-----------SCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCcccccccccc-----------cccCCccccccCCCCccccccccccchhhhc
Confidence 888777532 2345578888888888888875322211 123456777777777775322 22222
Q ss_pred ccccc---------cccccccccccccCCceeeccCCcceeecccccccccccccccCCcccccC
Q 046589 536 SCVVV---------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 536 ~~~~l---------l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 591 (729)
.+..+ +++..|..|..+++|+.|+|++|++++.+|..+. ++|+.|++++|+|++
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLA 540 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCC
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCC
Confidence 22211 4445555666666666777777766666655554 566666666666665
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-47 Score=437.43 Aligned_cols=425 Identities=21% Similarity=0.266 Sum_probs=267.2
Q ss_pred hhhhhc---ccccccchhHHHHHhcCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCC------C----------
Q 046589 83 KTLSRR---LGLAIANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLF------G---------- 143 (729)
Q Consensus 83 ~~l~~~---~~~~~~~~l~~l~~~~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~------~---------- 143 (729)
.....| .|+.|.. ..+|+.++|+++++.|.+|+.++.|++|++|||++|.+. +
T Consensus 64 ~~~c~w~~~~GV~C~~--------~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~ 135 (636)
T 4eco_A 64 KELDMWGAQPGVSLNS--------NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135 (636)
T ss_dssp SCGGGTTCCTTEEECT--------TCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH
T ss_pred CCcccccCCCCeEEcC--------CCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchH
Confidence 345667 7888864 268999999999999999999999999999999999751 1
Q ss_pred -----------------CCccccc-------------------CCCCCCEEec--cCCcCcccCCccccCCCCCcEEEee
Q 046589 144 -----------------QPSPQVS-------------------NLKRLKMLSL--GENQLSGSLPSQLGVLTWLETLSLC 185 (729)
Q Consensus 144 -----------------~~~~~~~-------------------~l~~L~~L~L--s~N~l~~~~p~~l~~L~~L~~L~Ls 185 (729)
.++..+. ....++.+.+ .+|++++ +|..|+++++|++|+|+
T Consensus 136 ~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls 214 (636)
T 4eco_A 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG 214 (636)
T ss_dssp HHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEE
T ss_pred HHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECc
Confidence 0111111 1112222222 2678887 89999999999999999
Q ss_pred ccCCCcc-----------------CCcccc--CCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCc-CCC-CCChh
Q 046589 186 SNSFTGE-----------------MPSELG--DMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNL-LSG-SLTVS 244 (729)
Q Consensus 186 ~N~l~~~-----------------~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~-~~~~~ 244 (729)
+|++++. +|..++ ++++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+| .
T Consensus 215 ~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp-~ 293 (636)
T 4eco_A 215 NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK-D 293 (636)
T ss_dssp SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH-H
T ss_pred CCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch-H
Confidence 9999975 899988 99999999999999999999999999999999999998 886 566 4
Q ss_pred hhccC------CCCCEEEcccccccccCCc--cccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccC
Q 046589 245 LFTNL------QSLSYLDVSNNLLSGNIPP--EISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGM 316 (729)
Q Consensus 245 ~~~~l------~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~ 316 (729)
.+..+ ++|++|++++|+++ .+|. .++.+++|+.++++.|.++|.+| .+..+++ +..++++.
T Consensus 294 ~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~---------L~~L~L~~ 362 (636)
T 4eco_A 294 DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK---------LASLNLAY 362 (636)
T ss_dssp HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE---------ESEEECCS
T ss_pred HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC---------CCEEECCC
Confidence 45555 89999999999999 7888 89999999999999888887666 4433322 23344444
Q ss_pred CCCCCCcchhcCCCCC-CCEEEccCCcceecCCCCCcCCC--CCcEEEecCCCCCCCCccccc-------CCCCCcEEEc
Q 046589 317 NQLSGPLPSWLGKWNQ-MESVWLNNNQFIGRIPLEVGNCS--MLKYIRLSNNKLSGSIPRELN-------DSESLVEINL 386 (729)
Q Consensus 317 n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~~~~-------~l~~L~~L~L 386 (729)
|.+. .+|.++..+++ |+.|++++|.+. .+|..+..++ +|++|++++|++++.+|..+. .+++|+.|++
T Consensus 363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 363 NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 4444 34444444444 555555555444 3444443332 445555555555444444444 3344444444
Q ss_pred CCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccC-C-------CCCCE
Q 046589 387 DGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGD-S-------TSLNI 458 (729)
Q Consensus 387 ~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l-------~~L~~ 458 (729)
++|.++..++ ..+..+++|++|++++|+++ .+|..... . ++|+.
T Consensus 441 s~N~l~~lp~---------------------------~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 441 SNNQISKFPK---------------------------ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTS 492 (636)
T ss_dssp CSSCCCSCCT---------------------------HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCE
T ss_pred cCCccCcCCH---------------------------HHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccE
Confidence 4444443322 22333444455555554444 33322211 1 14455
Q ss_pred EEcccccCCccCchhhh--cCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecC------CCcCcccC
Q 046589 459 LELGNNNLNGSIPEKIA--DLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLS------YNMLSGPI 530 (729)
Q Consensus 459 L~Ls~N~l~~~~p~~l~--~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls------~N~l~g~~ 530 (729)
|+|++|+++ .+|..+. .+++|+.|++++|++++ +|..+. .+++|+.|+++ +|++.
T Consensus 493 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~------------~l~~L~~L~Ls~N~~ls~N~l~--- 555 (636)
T 4eco_A 493 IDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL------------NSSTLKGFGIRNQRDAQGNRTL--- 555 (636)
T ss_dssp EECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG------------GCSSCCEEECCSCBCTTCCBCC---
T ss_pred EECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhh------------cCCCCCEEECCCCcccccCccc---
Confidence 555555554 3444443 44455555555555443 333222 33444445443 33333
Q ss_pred CchhhccccccccccccccccccCCceeeccCCcceeecccccccccccccccCCccccc
Q 046589 531 PKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590 (729)
Q Consensus 531 p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 590 (729)
+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|++++|++.
T Consensus 556 ------------~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 556 ------------REWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp ------------CCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred ------------ccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 34455556667777777777777 44555544 56777777777655
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=431.10 Aligned_cols=452 Identities=20% Similarity=0.158 Sum_probs=307.0
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
..+++++++++|.+.+..|..+.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..++.+++|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 56789999999999987788899999999999999999999999999999999999999999977778999999999999
Q ss_pred eeccCCCc-cCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCC----eeeccCCcCCCCCChhhhccCCCCCEEEcc
Q 046589 184 LCSNSFTG-EMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQ----DLDLSDNLLSGSLTVSLFTNLQSLSYLDVS 258 (729)
Q Consensus 184 Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 258 (729)
+++|.+++ .+|..|+++++|++|++++|++++..|..++.+.+|+ +|++++|.++ .++...+... +|+.|+++
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~ 212 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLR 212 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEE
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeecc
Confidence 99999986 5799999999999999999999988888888877765 7999999998 5665666555 89999999
Q ss_pred ccccc-ccCCccccCCCcCCeecccc---------------------------------ccccccccccccCCCCccccc
Q 046589 259 NNLLS-GNIPPEISHLKKLSDHYLGI---------------------------------NQFTGSIQSELGNCKNFKSVL 304 (729)
Q Consensus 259 ~N~l~-~~~p~~l~~l~~L~~l~l~~---------------------------------n~l~~~~~~~l~~l~~l~~~l 304 (729)
+|.+. +..|..+..++.++.+.+.. +.+.+.++. +..+++
T Consensus 213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~----- 286 (606)
T 3vq2_A 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLAN----- 286 (606)
T ss_dssp SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTT-----
T ss_pred CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCC-----
Confidence 99876 34455566666666555432 222222222 222222
Q ss_pred ccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEE
Q 046589 305 AELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEI 384 (729)
Q Consensus 305 ~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 384 (729)
+..++++.|.+. .+| ++..+++|++|++++|.+ +.+| .+ .+++|++|++++|+..+.+ .+..+++|+.|
T Consensus 287 ----L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 287 ----VSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYL 355 (606)
T ss_dssp ----CSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred ----CCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence 344455555553 233 555556666666666665 4455 23 5556666666666433222 44455556666
Q ss_pred EcCCCCCCCCc--cccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccC-cCccCCCCCCEEEc
Q 046589 385 NLDGNMLSGTI--EDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIP-MRLGDSTSLNILEL 461 (729)
Q Consensus 385 ~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L 461 (729)
++++|.+++.. +..+ ..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+..+++|+.|++
T Consensus 356 ~ls~n~l~~~~~~~~~~---~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSD---LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp ECCSSCEEEEEECCHHH---HCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred ECcCCccCCCcchhhhh---ccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 66665554431 2222 234455555555555553 34555555555555555555555444 34555555555555
Q ss_pred ccccCCccCchhhhcCCCCCEEeCCCCcCccc-ccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccc
Q 046589 462 GNNNLNGSIPEKIADLAQLQFLDLSYNNLSRP-ILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV 540 (729)
Q Consensus 462 s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~l 540 (729)
++|++++..|..+..+++|++|++++|.+++. +|..+. .+++|+.|++++|++++..|..+..+..+
T Consensus 432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA------------NTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT------------TCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc------------cCCCCCEEECCCCcCCccChhhhcccccC
Confidence 55555555555555555555555555555542 222221 34455555555555555555444433222
Q ss_pred ---------cccccccccccccCCceeeccCCcceeeccccccccc-ccccccCCcccccC
Q 046589 541 ---------LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLN-GLTNLDLSYNEFDG 591 (729)
Q Consensus 541 ---------l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~g 591 (729)
+++.+|..+..+++|++|||++|+++. +|..+..++ +|+.|++++|++..
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCC
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCccc
Confidence 345667888999999999999999996 455588886 59999999999986
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-46 Score=425.57 Aligned_cols=452 Identities=21% Similarity=0.186 Sum_probs=303.7
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
..+++.+++++|.+++..+..+.++++|++|||++|+++++.+..|+++++|++|+|++|++++..|..|+++++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 45688999999999987778899999999999999999999889999999999999999999988889999999999999
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCCCCC-CCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCC----CEEEcc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNG-TVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSL----SYLDVS 258 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L----~~L~Ls 258 (729)
+++|++++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.++ .++...+..+++| ..|+++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhcccC
Confidence 99999997666689999999999999999986 47999999999999999999998 4555778888888 899999
Q ss_pred cccccccCCccccCCCcCCeecccccccccc-ccccccCCCCcc-----------------------cccccceeEEEEc
Q 046589 259 NNLLSGNIPPEISHLKKLSDHYLGINQFTGS-IQSELGNCKNFK-----------------------SVLAELQIFTFSA 314 (729)
Q Consensus 259 ~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~-~~~~l~~l~~l~-----------------------~~l~~l~l~~l~l 314 (729)
+|.+++..|..+... +|+.++++.|..... ++..+..++.+. ..+..+.+..+++
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 999998888777665 788888877632211 111111111110 0111223344444
Q ss_pred cCC-CCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCccc-------------------
Q 046589 315 GMN-QLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRE------------------- 374 (729)
Q Consensus 315 ~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~------------------- 374 (729)
..+ .+.+..|..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|++. .+|..
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccc
Confidence 444 444555566666666666666666655 355555555 6666666666655 23321
Q ss_pred -ccCCCCCcEEEcCCCCCCCCc--cccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccC-cCc
Q 046589 375 -LNDSESLVEINLDGNMLSGTI--EDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIP-MRL 450 (729)
Q Consensus 375 -~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~ 450 (729)
...+++|+.|++++|.+++.. +.. +..+++|++|++++|.+++..+. +..+++|++|++++|.+.+..| ..+
T Consensus 342 ~~~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 342 SEVDLPSLEFLDLSRNGLSFKGCCSQS---DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEEEEHH---HHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTT
T ss_pred ccccCCCCCEEeCcCCccCcccccccc---ccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhh
Confidence 033445555555555444321 111 12344455555555555533222 5555555555555555554433 344
Q ss_pred cCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCc-ccccccccccccccCCCCcccCCCCCeEecCCCcCccc
Q 046589 451 GDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS-RPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGP 529 (729)
Q Consensus 451 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~ 529 (729)
..+++|++|++++|.+++..|..+..+++|+.|++++|.++ +.+|..+ ..+++|+.|++++|++++
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~------------~~l~~L~~L~l~~n~l~~- 484 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF------------TELRNLTFLDLSQCQLEQ- 484 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC------------TTCTTCCEEECTTSCCCE-
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh------------hcccCCCEEECCCCcccc-
Confidence 55555555555555555555555555555555555555554 2233222 244555555555555543
Q ss_pred CCchhhccccccccccccccccccCCceeeccCCcceeecccccccccccccccCCcccccC
Q 046589 530 IPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 530 ~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 591 (729)
..|..|..+++|++|++++|++++.+|..|..+++|+.|++++|++++
T Consensus 485 --------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 485 --------------LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp --------------ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred --------------CChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 345666777888888888888888877778888888888888888876
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=438.87 Aligned_cols=437 Identities=23% Similarity=0.206 Sum_probs=335.8
Q ss_pred cCCcEEEEcCCCCCcCcC-CccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcc--ccCCCCCc
Q 046589 104 LLRVVYQVLRTQSLKGPV-SPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQ--LGVLTWLE 180 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~-~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~L~~L~ 180 (729)
+.++++|++++|...+.+ |..+.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++.+|.. ++.+++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 577999999999877777 678999999999999999999999999999999999999999999877766 99999999
Q ss_pred EEEeeccCCCccCC-ccccCCCCCcEEEccCCCCCCCCccccCCC--CCCCeeeccCCcCCCCCChhhhccCC------C
Q 046589 181 TLSLCSNSFTGEMP-SELGDMKQLKSLDFSGNGFNGTVPIRLGEL--TRLQDLDLSDNLLSGSLTVSLFTNLQ------S 251 (729)
Q Consensus 181 ~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~N~l~~~~~~~~~~~l~------~ 251 (729)
+|+|++|.+++..+ ..|+++++|++|+|++|.+++..|..++.+ ++|++|++++|.+.+..+ ..+..++ +
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS-VDWGKCMNPFRNMV 205 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC-CCCCSSSCTTTTCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc-cchhhcCCccccCc
Confidence 99999999987655 579999999999999999999999999888 899999999999987666 3344444 4
Q ss_pred CCEEEcccccccccCCccccCC--------------------------------------CcCCeecccccccccccccc
Q 046589 252 LSYLDVSNNLLSGNIPPEISHL--------------------------------------KKLSDHYLGINQFTGSIQSE 293 (729)
Q Consensus 252 L~~L~Ls~N~l~~~~p~~l~~l--------------------------------------~~L~~l~l~~n~l~~~~~~~ 293 (729)
|++|++++|.+++..|..+... .+|+.++++.|.+.+..+..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 9999999999988777655432 46778888888887766666
Q ss_pred ccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcc
Q 046589 294 LGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPR 373 (729)
Q Consensus 294 l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 373 (729)
+..++++ ..++++.|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+.
T Consensus 286 ~~~l~~L---------~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 286 FETLKDL---------KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp SSSCCCC---------CEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS
T ss_pred hhcCCCC---------CEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh
Confidence 6666554 6788999999988899999999999999999999988899999999999999999999988888
Q ss_pred cccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcc----------------------cCCCCC
Q 046589 374 ELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKE----------------------IGNLRS 431 (729)
Q Consensus 374 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~----------------------l~~l~~ 431 (729)
.|..+++|+.|++++|.+++... +++|+.|++++|+++. +|.. +..+++
T Consensus 357 ~~~~l~~L~~L~Ls~N~l~~i~~--------~~~L~~L~l~~N~l~~-l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~ 427 (844)
T 3j0a_A 357 TFKFLEKLQTLDLRDNALTTIHF--------IPSIPDIFLSGNKLVT-LPKINLTANLIHLSENRLENLDILYFLLRVPH 427 (844)
T ss_dssp CSCSCCCCCEEEEETCCSCCCSS--------CCSCSEEEEESCCCCC-CCCCCTTCCEEECCSCCCCSSTTHHHHTTCTT
T ss_pred hhcCCCCCCEEECCCCCCCcccC--------CCCcchhccCCCCccc-ccccccccceeecccCccccCchhhhhhcCCc
Confidence 89999999999999999885422 4556667777776662 3332 234455
Q ss_pred CCEEEccCCccccccCc-CccCCCCCCEEEcccccCC-----ccCchhhhcCCCCCEEeCCCCcCccccccccccccccc
Q 046589 432 IQILKLNSNFFNGSIPM-RLGDSTSLNILELGNNNLN-----GSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEV 505 (729)
Q Consensus 432 L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~ 505 (729)
|++|++++|++++..+. .+..+++|+.|+|++|.++ +..+..|..+++|+.|||++|.+++..+..
T Consensus 428 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------- 499 (844)
T 3j0a_A 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV-------- 499 (844)
T ss_dssp CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS--------
T ss_pred cceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhH--------
Confidence 55555555555432221 2233445555555555554 222334444555555555555554322222
Q ss_pred CCCCcccCCCCCeEecCCCcCcccCCchhhccccccccccccccccccCCceeeccCCcceeecccccccccccccccCC
Q 046589 506 NIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLS 585 (729)
Q Consensus 506 ~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 585 (729)
+..+++|+.||+++|++++. .|..+. ++|+.|||++|++++.+|..|. +|+.|+++
T Consensus 500 ----~~~l~~L~~L~Ls~N~l~~l---------------~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~ 555 (844)
T 3j0a_A 500 ----FSHLTALRGLSLNSNRLTVL---------------SHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDIT 555 (844)
T ss_dssp ----SSSCCSCSEEEEESCCCSSC---------------CCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEE
T ss_pred ----ccchhhhheeECCCCCCCcc---------------Chhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEec
Confidence 22455666666666666542 233333 7899999999999999998875 68899999
Q ss_pred cccccC
Q 046589 586 YNEFDG 591 (729)
Q Consensus 586 ~N~l~g 591 (729)
+|++..
T Consensus 556 ~Np~~C 561 (844)
T 3j0a_A 556 HNKFIC 561 (844)
T ss_dssp EECCCC
T ss_pred CCCccc
Confidence 999876
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=433.66 Aligned_cols=441 Identities=18% Similarity=0.213 Sum_probs=314.3
Q ss_pred ccccccchhHHHHHhcCCcEEEEcCCCCCcCcCCccCCCCCCCcEEEC-CCCCCCCCCccc-------------------
Q 046589 89 LGLAIANALKDLEELLLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNL-SQNLLFGQPSPQ------------------- 148 (729)
Q Consensus 89 ~~~~~~~~l~~l~~~~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~L-s~N~l~~~~~~~------------------- 148 (729)
.|+.|.. ..+|+.++|+++++.|.+|+.+++|++|++||| ++|.+.|..+-.
T Consensus 315 ~GV~C~~--------~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~ 386 (876)
T 4ecn_A 315 PGVDLDN--------NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386 (876)
T ss_dssp TTEEECT--------TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTH
T ss_pred CceEecC--------CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHh
Confidence 6666653 367999999999999999999999999999999 888776542211
Q ss_pred ------------------------------c--cCCCCCCEEeccC--CcCcccCCccccCCCCCcEEEeeccCCCc---
Q 046589 149 ------------------------------V--SNLKRLKMLSLGE--NQLSGSLPSQLGVLTWLETLSLCSNSFTG--- 191 (729)
Q Consensus 149 ------------------------------~--~~l~~L~~L~Ls~--N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~--- 191 (729)
+ .....++.+.++. |++++ +|..|+++++|++|+|++|++++
T Consensus 387 ~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i 465 (876)
T 4ecn_A 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNI 465 (876)
T ss_dssp HHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGB
T ss_pred hhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcc
Confidence 0 1122344444443 88887 89999999999999999999998
Q ss_pred --------------cCCcccc--CCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCc-CCC-CCChhhhcc-----
Q 046589 192 --------------EMPSELG--DMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNL-LSG-SLTVSLFTN----- 248 (729)
Q Consensus 192 --------------~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~-~~~~~~~~~----- 248 (729)
.+|..++ ++++|++|+|++|.+.+.+|..++++++|++|+|++|+ +++ .+| ..+..
T Consensus 466 ~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP-~~i~~L~~~~ 544 (876)
T 4ecn_A 466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK-ADWTRLADDE 544 (876)
T ss_dssp SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHH-HHHHHHHHCT
T ss_pred cccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccch-HHHHhhhhcc
Confidence 3888887 99999999999999999999999999999999999998 876 566 33444
Q ss_pred --CCCCCEEEcccccccccCCc--cccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcc
Q 046589 249 --LQSLSYLDVSNNLLSGNIPP--EISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLP 324 (729)
Q Consensus 249 --l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p 324 (729)
+++|++|++++|.++ .+|. .++.+++|+.++++.|.++ .+| .+..+++ +..++++.|.+. .+|
T Consensus 545 ~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~---------L~~L~Ls~N~l~-~lp 611 (876)
T 4ecn_A 545 DTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK---------LTDLKLDYNQIE-EIP 611 (876)
T ss_dssp TTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE---------ESEEECCSSCCS-CCC
T ss_pred cccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc---------ceEEECcCCccc-cch
Confidence 459999999999999 7888 8999999999999999887 555 5544443 356677777777 677
Q ss_pred hhcCCCCC-CCEEEccCCcceecCCCCCcCCCC--CcEEEecCCCCCCCCcccc---c--CCCCCcEEEcCCCCCCCCcc
Q 046589 325 SWLGKWNQ-MESVWLNNNQFIGRIPLEVGNCSM--LKYIRLSNNKLSGSIPREL---N--DSESLVEINLDGNMLSGTIE 396 (729)
Q Consensus 325 ~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~~---~--~l~~L~~L~L~~N~l~~~~~ 396 (729)
.++..+++ |+.|++++|.+. .+|..+..++. |+.|+|++|++.+.+|... . .+++|+.|++++|.++..++
T Consensus 612 ~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~ 690 (876)
T 4ecn_A 612 EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690 (876)
T ss_dssp TTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH
T ss_pred HHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH
Confidence 77777777 777777777776 56666665543 7777777777776555322 2 23467777777777775443
Q ss_pred ccccccCCCCCCcEEEcCCCcCcccCCcccCC--------CCCCCEEEccCCccccccCcCcc--CCCCCCEEEcccccC
Q 046589 397 DVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGN--------LRSIQILKLNSNFFNGSIPMRLG--DSTSLNILELGNNNL 466 (729)
Q Consensus 397 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--------l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l 466 (729)
..+ ..+++|+.|+|++|+++ .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++
T Consensus 691 ~~~---~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L 765 (876)
T 4ecn_A 691 ELF---ATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF 765 (876)
T ss_dssp HHH---HTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCC
T ss_pred HHH---ccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCC
Confidence 333 24556777777777777 44443322 227777777777777 6676665 777777777777777
Q ss_pred CccCchhhhcCCCCCEEeCCC------CcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccc
Q 046589 467 NGSIPEKIADLAQLQFLDLSY------NNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV 540 (729)
Q Consensus 467 ~~~~p~~l~~l~~L~~LdLs~------N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~l 540 (729)
++ +|..+..+++|+.|+|++ |++.+.+|..+. .+++|+.|++++|++ +.+|.
T Consensus 766 ~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~------------~L~~L~~L~Ls~N~L-~~Ip~-------- 823 (876)
T 4ecn_A 766 SS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT------------TCPSLIQLQIGSNDI-RKVDE-------- 823 (876)
T ss_dssp SS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG------------GCSSCCEEECCSSCC-CBCCS--------
T ss_pred Cc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh------------cCCCCCEEECCCCCC-CccCH--------
Confidence 75 677777777777777765 455554444333 456666777777766 44433
Q ss_pred cccccccccccccCCceeeccCCcceeecccccccccccccccCCcccc
Q 046589 541 LTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEF 589 (729)
Q Consensus 541 l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 589 (729)
.+. ++|+.|||++|++..+.+..|.....+..+.|++|.+
T Consensus 824 -------~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 824 -------KLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp -------CCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred -------hhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 222 3566677777777666666665555555566666543
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-45 Score=415.70 Aligned_cols=437 Identities=19% Similarity=0.209 Sum_probs=317.6
Q ss_pred EEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeecc
Q 046589 108 VYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187 (729)
Q Consensus 108 ~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N 187 (729)
+.++++++.++ .+|..+. ++|++|+|++|.+++.++..|.++++|++|+|++|++++..|+.|+++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46888999888 5777665 89999999999999888888999999999999999999888889999999999999999
Q ss_pred CCCccCCccccCCCCCcEEEccCCCCCC-CCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCC--CEEEcccccc--
Q 046589 188 SFTGEMPSELGDMKQLKSLDFSGNGFNG-TVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSL--SYLDVSNNLL-- 262 (729)
Q Consensus 188 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L--~~L~Ls~N~l-- 262 (729)
+++ .+|.. .+++|++|+|++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTT
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccc
Confidence 998 56665 88999999999999986 468889999999999999998874 456777788 9999999988
Q ss_pred cccCCccccCCCc-CCeeccccccccccccc-cccCCCCcccc--------------------cccc-eeEEEEccCCCC
Q 046589 263 SGNIPPEISHLKK-LSDHYLGINQFTGSIQS-ELGNCKNFKSV--------------------LAEL-QIFTFSAGMNQL 319 (729)
Q Consensus 263 ~~~~p~~l~~l~~-L~~l~l~~n~l~~~~~~-~l~~l~~l~~~--------------------l~~l-~l~~l~l~~n~l 319 (729)
.+..|..+..+.. ...++++.|.+.+.++. .+..++.+... +..+ .+..++++.|.+
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccccc
Confidence 7777777766441 12234444444433322 11122211100 0000 022233333333
Q ss_pred CCCcchhcC---CCCCCCEEEccCCcceecCCCCC-----cCCCCCcEEEecCCCCCCCCc-ccccCC---CCCcEEEcC
Q 046589 320 SGPLPSWLG---KWNQMESVWLNNNQFIGRIPLEV-----GNCSMLKYIRLSNNKLSGSIP-RELNDS---ESLVEINLD 387 (729)
Q Consensus 320 ~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~L~ 387 (729)
.+..+..+. ..++|++|++++|++.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|+++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 221111110 13467778888888777777777 7777888888888877 344 444433 568888888
Q ss_pred CCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCcccc--ccCcCccCCCCCCEEEccccc
Q 046589 388 GNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG--SIPMRLGDSTSLNILELGNNN 465 (729)
Q Consensus 388 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~ 465 (729)
+|.+..... ...+++|++|++++|++++.+|..+..+++|++|++++|++++ .+|..++.+++|++|++++|+
T Consensus 311 ~n~l~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 311 GTRMVHMLC-----PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp SSCCCCCCC-----CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred CCccccccc-----hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 887654321 1456778888888888887788888888888888888888875 456677888888888888888
Q ss_pred CCccCch-hhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccccccc
Q 046589 466 LNGSIPE-KIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGY 544 (729)
Q Consensus 466 l~~~~p~-~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ 544 (729)
+++.+|. .+..+++|+.|++++|++++.+|... .++|+.||+++|+++ .
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--------------~~~L~~L~Ls~N~l~----------------~ 435 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--------------PPRIKVLDLHSNKIK----------------S 435 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC--------------CTTCCEEECCSSCCC----------------C
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhh--------------cccCCEEECCCCccc----------------c
Confidence 8875555 37777888888888888876544322 146788888888876 4
Q ss_pred cccccccccCCceeeccCCcceeecccccccccccccccCCcccccC
Q 046589 545 IPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 545 ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 591 (729)
+|..+..+++|++|++++|+++.+.+..|..+++|++|++++|++++
T Consensus 436 ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 56666688999999999999997655569999999999999999987
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=416.33 Aligned_cols=440 Identities=18% Similarity=0.170 Sum_probs=322.2
Q ss_pred CCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEe
Q 046589 105 LRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184 (729)
Q Consensus 105 ~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L 184 (729)
.+++.+++++|.+++..|..+.++++|++|+|++|++++.++.+|+++++|++|+|++|++++..|..|+.+++|++|+|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46888999999988777788889999999999999998888888899999999999999998777777899999999999
Q ss_pred eccCCCc-cCCccccCCCCCcEEEccCCCCCCCCc-cccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccc
Q 046589 185 CSNSFTG-EMPSELGDMKQLKSLDFSGNGFNGTVP-IRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL 262 (729)
Q Consensus 185 s~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 262 (729)
++|.+++ ..|..++++++|++|++++|.+.+.+| ..++++++|++|++++|.+++.++ ..+..+++|++|++++|.+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS-QSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSBS
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh-hhhhccccCceEecccCcc
Confidence 9999886 356788899999999999998444454 678889999999999998886555 6778888999999998887
Q ss_pred cccCCccccCCCcCCeeccccccccccc--cccc-cCCCCcccccccceeEEEEccCCCCCCCcch----hcCCCCCCCE
Q 046589 263 SGNIPPEISHLKKLSDHYLGINQFTGSI--QSEL-GNCKNFKSVLAELQIFTFSAGMNQLSGPLPS----WLGKWNQMES 335 (729)
Q Consensus 263 ~~~~p~~l~~l~~L~~l~l~~n~l~~~~--~~~l-~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~----~l~~l~~L~~ 335 (729)
....+..+..+++|+.++++.|++++.. +..+ ..++. +..++++.|.+.+..+. .+..+++|+.
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~---------L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP---------MKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC---------CCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhc---------ccceeccccccchhHHHHHHHHhhhhccccc
Confidence 6332233456888999999999887642 1111 11111 22333333333322211 1223344444
Q ss_pred EEccCCcceecC-----------------------------------CCCCcCCCCCcEEEecCCCCCCCCcccc-cCCC
Q 046589 336 VWLNNNQFIGRI-----------------------------------PLEVGNCSMLKYIRLSNNKLSGSIPREL-NDSE 379 (729)
Q Consensus 336 L~L~~n~l~~~~-----------------------------------p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~ 379 (729)
+++++|.+.+.. +..+...++|++|++++|++. .+|..+ ..++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 444444443311 000112356788888888876 456555 5688
Q ss_pred CCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCC--cccCCCCCCCEEEccCCccccccCcCccCCCCCC
Q 046589 380 SLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIP--KEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLN 457 (729)
Q Consensus 380 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 457 (729)
+|++|++++|.+++..+.....+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|+
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~ 413 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccccc
Confidence 88888888888876554333334567788888888888875432 45778888888888888887 6787888888888
Q ss_pred EEEcccccCCccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhcc
Q 046589 458 ILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSC 537 (729)
Q Consensus 458 ~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~ 537 (729)
+|++++|+++ .+|..+ .++|++||+++|++++.+ ..+++|+.||+++|+++ .+|
T Consensus 414 ~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----------------~~l~~L~~L~Ls~N~l~-~ip------ 467 (549)
T 2z81_A 414 FLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----------------LFLPRLQELYISRNKLK-TLP------ 467 (549)
T ss_dssp EEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----------------CCCTTCCEEECCSSCCS-SCC------
T ss_pred EEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----------------ccCChhcEEECCCCccC-cCC------
Confidence 8888888887 344433 257888888888887521 14677889999999887 333
Q ss_pred ccccccccccccccccCCceeeccCCcceeecccccccccccccccCCcccccCC
Q 046589 538 VVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592 (729)
Q Consensus 538 ~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 592 (729)
. ...+++|++|||++|++++.+|..|..+++|+.|++++|++.+.
T Consensus 468 ---------~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 468 ---------D-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp ---------C-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred ---------C-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 3 24578899999999999999999999999999999999999873
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=422.67 Aligned_cols=393 Identities=21% Similarity=0.312 Sum_probs=327.6
Q ss_pred CCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCc------c---------------------------cCCcccc-
Q 046589 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLS------G---------------------------SLPSQLG- 174 (729)
Q Consensus 129 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~------~---------------------------~~p~~l~- 174 (729)
.+++.|+|++|.+.|.+|++++++++|++|+|++|.+. + .+|..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 58999999999999999999999999999999999762 1 1111111
Q ss_pred ------------------CCCCCcEEEe--eccCCCccCCccccCCCCCcEEEccCCCCCCC-----------------C
Q 046589 175 ------------------VLTWLETLSL--CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGT-----------------V 217 (729)
Q Consensus 175 ------------------~L~~L~~L~L--s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-----------------~ 217 (729)
....++.+++ .+|++++ +|..|+++++|++|+|++|.+++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 0111222222 2678888 899999999999999999999985 9
Q ss_pred ccccC--CCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccc-ccc-cCCccccCC------CcCCeecccccccc
Q 046589 218 PIRLG--ELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNL-LSG-NIPPEISHL------KKLSDHYLGINQFT 287 (729)
Q Consensus 218 p~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l------~~L~~l~l~~n~l~ 287 (729)
|..++ ++++|++|++++|.+.+.+| ..|.++++|++|++++|+ +++ .+|..++.+ ++|+.++++.|+++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred chhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 99999 99999999999999998888 778999999999999998 998 899988877 78888877776654
Q ss_pred ccccccccCCCCcccccccceeEEEEccCCCCCCCcch--hcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCC
Q 046589 288 GSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPS--WLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNN 365 (729)
Q Consensus 288 ~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 365 (729)
.+|. .++.+++|+.|++++|++.|.+| .+..+++|++|++++|
T Consensus 319 ----------------------------------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 319 ----------------------------------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp ----------------------------------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred ----------------------------------ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence 3565 67888899999999999998999 8999999999999999
Q ss_pred CCCCCCcccccCCCC-CcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccC-------CCCCCCEEEc
Q 046589 366 KLSGSIPRELNDSES-LVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIG-------NLRSIQILKL 437 (729)
Q Consensus 366 ~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-------~l~~L~~L~L 437 (729)
+++ .+|..+..+++ |+.|++++|.++ .+|..+.. ..+++|++|++++|++++.+|..+. .+++|++|++
T Consensus 364 ~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 364 QIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA-KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp EEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT-TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred ccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhh-cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 998 78888999999 999999999999 45555432 2345899999999999999999888 8899999999
Q ss_pred cCCccccccCcC-ccCCCCCCEEEcccccCCccCchh-hhcCC-------CCCEEeCCCCcCcccccccccccccccCCC
Q 046589 438 NSNFFNGSIPMR-LGDSTSLNILELGNNNLNGSIPEK-IADLA-------QLQFLDLSYNNLSRPILSKHSSYFHEVNIP 508 (729)
Q Consensus 438 ~~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~-------~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~ 508 (729)
++|.++ .+|.. +..+++|+.|+|++|+++ .+|.. +.... +|+.|++++|+++ .+|.....
T Consensus 441 s~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------- 509 (636)
T 4eco_A 441 SNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA-------- 509 (636)
T ss_dssp CSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST--------
T ss_pred cCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh--------
Confidence 999999 55544 556899999999999999 55554 33332 9999999999998 55544320
Q ss_pred CcccCCCCCeEecCCCcCcccCCchhhccccccccccccccccccCCceeec------cCCcceeecccccccccccccc
Q 046589 509 DLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNL------SGNKLSVLVPTSFGNLNGLTNL 582 (729)
Q Consensus 509 ~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L 582 (729)
..+++|+.|++++|++++ +|..+..+++|+.|+| ++|++.+.+|..|..+++|+.|
T Consensus 510 --~~l~~L~~L~Ls~N~l~~----------------ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 510 --TTLPYLVGIDLSYNSFSK----------------FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp --TTCTTCCEEECCSSCCSS----------------CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred --ccCCCcCEEECCCCCCCC----------------cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 156789999999999974 4556678899999999 5688999999999999999999
Q ss_pred cCCccccc
Q 046589 583 DLSYNEFD 590 (729)
Q Consensus 583 ~Ls~N~l~ 590 (729)
++++|++.
T Consensus 572 ~Ls~N~l~ 579 (636)
T 4eco_A 572 QIGSNDIR 579 (636)
T ss_dssp ECCSSCCC
T ss_pred ECCCCcCC
Confidence 99999994
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-44 Score=408.33 Aligned_cols=447 Identities=19% Similarity=0.183 Sum_probs=349.7
Q ss_pred EEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccC
Q 046589 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188 (729)
Q Consensus 109 ~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 188 (729)
..+.++.+++ .+|..+. +++++|||++|.+++..+.+|.++++|++|+|++|++++..|..|+++++|++|+|++|+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 3455555555 4565443 589999999999999999999999999999999999998888899999999999999999
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCC-CCChhhhccCCCCCEEEcccccccccCC
Q 046589 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSG-SLTVSLFTNLQSLSYLDVSNNLLSGNIP 267 (729)
Q Consensus 189 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 267 (729)
+++..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+++ .+| ..|.++++|++|++++|.+++..|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECTTSCCCEECG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecCh-hhhcccCCCCEEeCcCCccceecH
Confidence 998888999999999999999999997666689999999999999999985 345 678999999999999999998888
Q ss_pred ccccCCCcC----CeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCC-Ccch-----------------
Q 046589 268 PEISHLKKL----SDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSG-PLPS----------------- 325 (729)
Q Consensus 268 ~~l~~l~~L----~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~-~~p~----------------- 325 (729)
..++.+++| ..++++.|.+++..+..+..+ .+..++++.|.... .++.
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~----------~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI----------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC----------EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhccC----------cceeEecccccccccchhhhhcCccccceeeecccc
Confidence 889888888 789999999987666554332 23444444332111 0111
Q ss_pred -------------hcCCCC--CCCEEEccCC-cceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCC
Q 046589 326 -------------WLGKWN--QMESVWLNNN-QFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGN 389 (729)
Q Consensus 326 -------------~l~~l~--~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 389 (729)
.+..++ .++.+++.++ .+.+..|..+..+++|++|++++|.++ .+|..+..+ +|+.|++++|
T Consensus 237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n 314 (570)
T 2z63_A 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNC 314 (570)
T ss_dssp CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESC
T ss_pred ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccC
Confidence 111111 2456677777 777888999999999999999999998 578888888 9999999999
Q ss_pred CCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCcccccc--CcCccCCCCCCEEEcccccCC
Q 046589 390 MLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSI--PMRLGDSTSLNILELGNNNLN 467 (729)
Q Consensus 390 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~ 467 (729)
.+...+. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. |..+..+++|+.|++++|.++
T Consensus 315 ~~~~l~~------~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 386 (570)
T 2z63_A 315 KFGQFPT------LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386 (570)
T ss_dssp BCSSCCB------CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE
T ss_pred cccccCc------ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc
Confidence 9984433 2456777888888877765554 67788888888888877543 566777788888888888877
Q ss_pred ccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccc-------
Q 046589 468 GSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV------- 540 (729)
Q Consensus 468 ~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~l------- 540 (729)
+..+. +..+++|+.|++++|.+++..+.. .+..+++|+.|++++|++.+.+|..+..+..+
T Consensus 387 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 454 (570)
T 2z63_A 387 TMSSN-FLGLEQLEHLDFQHSNLKQMSEFS-----------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454 (570)
T ss_dssp EEEEE-EETCTTCCEEECTTSEEESCTTSC-----------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred ccccc-ccccCCCCEEEccCCccccccchh-----------hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcC
Confidence 54444 777888888888888776533311 12355677777777777777666665544333
Q ss_pred --cc-cccccccccccCCceeeccCCcceeecccccccccccccccCCcccccC
Q 046589 541 --LT-GYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 541 --l~-g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 591 (729)
++ +.+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++
T Consensus 455 n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 23 5688889999999999999999999999999999999999999999887
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=423.53 Aligned_cols=419 Identities=19% Similarity=0.237 Sum_probs=349.9
Q ss_pred CCCcEEECCCCCCCCCCcccccCCCCCCEEec-cCCcCcccCCccc----------------------------------
Q 046589 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSL-GENQLSGSLPSQL---------------------------------- 173 (729)
Q Consensus 129 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L-s~N~l~~~~p~~l---------------------------------- 173 (729)
.+++.|+|++|.+.|.+|++++++++|++|+| ++|.++|..|-..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 58999999999999999999999999999999 9998876633221
Q ss_pred -----------------cCCCCCcEEEee--ccCCCccCCccccCCCCCcEEEccCCCCCC-----------------CC
Q 046589 174 -----------------GVLTWLETLSLC--SNSFTGEMPSELGDMKQLKSLDFSGNGFNG-----------------TV 217 (729)
Q Consensus 174 -----------------~~L~~L~~L~Ls--~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-----------------~~ 217 (729)
.....++.+.+. .|++++ +|..|+++++|++|+|++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 111223334443 388887 89999999999999999999998 38
Q ss_pred ccccC--CCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccc-ccc-cCCccccCCC-------cCCeeccccccc
Q 046589 218 PIRLG--ELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNL-LSG-NIPPEISHLK-------KLSDHYLGINQF 286 (729)
Q Consensus 218 p~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l~-------~L~~l~l~~n~l 286 (729)
|..++ ++++|++|+|++|.+.+.+| ..|.++++|++|+|++|+ +++ .+|..++.+. +|+.++++.|.+
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 99988 99999999999999998888 788999999999999998 998 7888777666 999999999999
Q ss_pred cccccc--cccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCC-CcEEEec
Q 046589 287 TGSIQS--ELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSM-LKYIRLS 363 (729)
Q Consensus 287 ~~~~~~--~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls 363 (729)
+ .+|. .+..++++ ..++++.|.+. .+| .++.+++|+.|++++|++. .+|..+..+++ |++|+|+
T Consensus 561 ~-~ip~~~~l~~L~~L---------~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 561 E-EFPASASLQKMVKL---------GLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp C-BCCCHHHHTTCTTC---------CEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred C-ccCChhhhhcCCCC---------CEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECc
Confidence 9 7777 77777665 67899999998 788 8999999999999999998 88888999999 9999999
Q ss_pred CCCCCCCCcccccCCCC--CcEEEcCCCCCCCCccccccccC--CCCCCcEEEcCCCcCcccCCcc-cCCCCCCCEEEcc
Q 046589 364 NNKLSGSIPRELNDSES--LVEINLDGNMLSGTIEDVFGRCT--NLSQLEKLDLSSNMLTGRIPKE-IGNLRSIQILKLN 438 (729)
Q Consensus 364 ~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~ 438 (729)
+|+++ .+|..+..+.. |+.|++++|.+.+.+|....... .+++|+.|+|++|+++. +|.. +..+++|+.|+|+
T Consensus 628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls 705 (876)
T 4ecn_A 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILS 705 (876)
T ss_dssp SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECC
T ss_pred CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECC
Confidence 99999 68888877654 99999999999988776553333 24589999999999994 5654 4589999999999
Q ss_pred CCccccccCcCccCC--------CCCCEEEcccccCCccCchhhh--cCCCCCEEeCCCCcCcccccccccccccccCCC
Q 046589 439 SNFFNGSIPMRLGDS--------TSLNILELGNNNLNGSIPEKIA--DLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIP 508 (729)
Q Consensus 439 ~N~l~~~~p~~~~~l--------~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~ 508 (729)
+|+++ .+|..+... ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.
T Consensus 706 ~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~--------- 773 (876)
T 4ecn_A 706 NNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL--------- 773 (876)
T ss_dssp SCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG---------
T ss_pred CCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhh---------
Confidence 99999 677655443 28999999999999 7888887 99999999999999987 555544
Q ss_pred CcccCCCCCeEecCCCcCcccCCchhhccccccccccccccccccCCceeeccCCcceeecccccccccccccccCCccc
Q 046589 509 DLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNE 588 (729)
Q Consensus 509 ~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 588 (729)
.+++|+.|++++|+... ..-+.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|+
T Consensus 774 ---~L~~L~~L~Ls~N~~ls---------~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 774 ---NSSQLKAFGIRHQRDAE---------GNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp ---GCTTCCEEECCCCBCTT---------CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred ---cCCCCCEEECCCCCCcc---------cccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 67889999998854100 0112456777888999999999999999 67787765 599999999999
Q ss_pred ccC
Q 046589 589 FDG 591 (729)
Q Consensus 589 l~g 591 (729)
+..
T Consensus 839 l~~ 841 (876)
T 4ecn_A 839 NIS 841 (876)
T ss_dssp TCE
T ss_pred CCc
Confidence 864
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=391.56 Aligned_cols=436 Identities=20% Similarity=0.208 Sum_probs=331.6
Q ss_pred cEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeec
Q 046589 107 VVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186 (729)
Q Consensus 107 ~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 186 (729)
.+.++++++++++ +|..+. ++|++|+|++|.+++.++.+|.++++|++|+|++|++++..|+.|+.+++|++|+|++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3689999999985 776654 8999999999999999999999999999999999999988899999999999999999
Q ss_pred cCCCccCCccccCCCCCcEEEccCCCCCC-CCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCC--CEEEcccccc-
Q 046589 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNG-TVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSL--SYLDVSNNLL- 262 (729)
Q Consensus 187 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L--~~L~Ls~N~l- 262 (729)
|+++ .+|.. .+++|++|+|++|++++ ..|..|+++++|++|++++|.+++ . .+..+++| ++|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTSCEEEEEEEESSCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-C---chhhhhhceeeEEEeeccccc
Confidence 9998 56766 89999999999999986 346899999999999999999974 2 34555666 9999999999
Q ss_pred -cccCCccccCCC--cCCeecccccccccccccc-ccCCCCcccc------------------------cccceeEEEEc
Q 046589 263 -SGNIPPEISHLK--KLSDHYLGINQFTGSIQSE-LGNCKNFKSV------------------------LAELQIFTFSA 314 (729)
Q Consensus 263 -~~~~p~~l~~l~--~L~~l~l~~n~l~~~~~~~-l~~l~~l~~~------------------------l~~l~l~~l~l 314 (729)
++..|..+..+. .+ .++++.|.+.+.++.. +..++.+... +..+.+...++
T Consensus 183 ~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 183 IKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred ccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 778888777654 22 3345555555433321 1111111000 00111112222
Q ss_pred cCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCC-----cCCCCCcEEEecCCCCCCCCc-ccccC---CCCCcEEE
Q 046589 315 GMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEV-----GNCSMLKYIRLSNNKLSGSIP-RELND---SESLVEIN 385 (729)
Q Consensus 315 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~~~~---l~~L~~L~ 385 (729)
+.+.+.+ ++..+. ..+|++|++++|.+.+.+|..+ ..++.|+.++++.|.+ .+| ..+.. ..+|+.|+
T Consensus 262 ~~~~~~~-~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 262 TWKCSVK-LFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp CHHHHHH-HHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEE
T ss_pred cHHHHHH-HHHhhh-cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEE
Confidence 2221111 112221 2478888888888888888776 6677777777777776 344 22222 25789999
Q ss_pred cCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCcccc--ccCcCccCCCCCCEEEccc
Q 046589 386 LDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG--SIPMRLGDSTSLNILELGN 463 (729)
Q Consensus 386 L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~ 463 (729)
+++|.+..... ...+++|++|++++|++++.+|..+.++++|++|++++|++++ .+|..+..+++|+.|++++
T Consensus 338 l~~n~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 338 ISDTPFIHMVC-----PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EESSCCCCCCC-----CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred ccCCCcccccC-----ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 99998754321 1467789999999999998889999999999999999999986 3456788999999999999
Q ss_pred ccCCccCch-hhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccccc
Q 046589 464 NNLNGSIPE-KIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLT 542 (729)
Q Consensus 464 N~l~~~~p~-~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~ 542 (729)
|++++.+|. .+..+++|+.|++++|++++.+|... ..+|+.|++++|+++
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--------------~~~L~~L~L~~N~l~--------------- 463 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--------------PPKVKVLDLHNNRIM--------------- 463 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC--------------CTTCSEEECCSSCCC---------------
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh--------------cCcCCEEECCCCcCc---------------
Confidence 999984554 58888999999999999986544322 157899999999986
Q ss_pred cccccccccccCCceeeccCCcceeecccccccccccccccCCcccccCC
Q 046589 543 GYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592 (729)
Q Consensus 543 g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 592 (729)
.+|..+..+++|++|+|++|+++.+.+..|..+++|+.|++++|++.+.
T Consensus 464 -~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 464 -SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp -CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred -ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 4566666899999999999999976555599999999999999999873
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-42 Score=389.25 Aligned_cols=427 Identities=20% Similarity=0.213 Sum_probs=335.2
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcc-cCCccccCCCCCcEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSG-SLPSQLGVLTWLETL 182 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~L~~L~~L 182 (729)
+.+++++++++|.+.+..|..+.++++|++|||++|.+++.++..|+++++|++|+|++|++++ ..|..++.+++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 5679999999999998888899999999999999999999988889999999999999999986 467889999999999
Q ss_pred EeeccCCCccCC-ccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccc
Q 046589 183 SLCSNSFTGEMP-SELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNL 261 (729)
Q Consensus 183 ~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 261 (729)
++++|++.+.+| ..|.++++|++|++++|.+++..|..++.+++|++|+++.|.+. .++...+..+++|++|++++|+
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCB
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCc
Confidence 999999544554 68999999999999999999999999999999999999999986 6665666789999999999999
Q ss_pred ccccC--C-ccccCCCcCCeecccccccccccccccc----CCCCcccc--------------------cccce-eEEEE
Q 046589 262 LSGNI--P-PEISHLKKLSDHYLGINQFTGSIQSELG----NCKNFKSV--------------------LAELQ-IFTFS 313 (729)
Q Consensus 262 l~~~~--p-~~l~~l~~L~~l~l~~n~l~~~~~~~l~----~l~~l~~~--------------------l~~l~-l~~l~ 313 (729)
+++.. | .....+++|+.++++.|.+++..+..+. .++.+... +..+. +..+.
T Consensus 208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287 (549)
T ss_dssp CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence 98742 2 2234567788888888877654433221 11111100 00000 22233
Q ss_pred ccCCCCCC-----CcchhcCCCCCCCEEEccCCcceecCCCCC-cCCCCCcEEEecCCCCCCCCcc---cccCCCCCcEE
Q 046589 314 AGMNQLSG-----PLPSWLGKWNQMESVWLNNNQFIGRIPLEV-GNCSMLKYIRLSNNKLSGSIPR---ELNDSESLVEI 384 (729)
Q Consensus 314 l~~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L 384 (729)
+..+.+.. .++.......+|+.|++++|.+. .+|..+ ..+++|++|++++|++++.+|. .+..+++|+.|
T Consensus 288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L 366 (549)
T 2z81_A 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366 (549)
T ss_dssp EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred ccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence 33332221 11112223467999999999986 566555 5789999999999999987653 47789999999
Q ss_pred EcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccc
Q 046589 385 NLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNN 464 (729)
Q Consensus 385 ~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 464 (729)
++++|++++..+. -..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++ .+|..+ .++|++|+|++|
T Consensus 367 ~Ls~N~l~~~~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N 441 (549)
T 2z81_A 367 VLSQNHLRSMQKT-GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNN 441 (549)
T ss_dssp ECTTSCCCCHHHH-HHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSS
T ss_pred EccCCcccccccc-hhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCC
Confidence 9999999875431 012356788999999999999 58889999999999999999998 455444 368999999999
Q ss_pred cCCccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccccccc
Q 046589 465 NLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGY 544 (729)
Q Consensus 465 ~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ 544 (729)
++++.+ ..+++|++||+++|+++ .+|.. ..+++|+.||+++|++++.
T Consensus 442 ~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~-------------~~l~~L~~L~Ls~N~l~~~--------------- 488 (549)
T 2z81_A 442 NLDSFS----LFLPRLQELYISRNKLK-TLPDA-------------SLFPVLLVMKISRNQLKSV--------------- 488 (549)
T ss_dssp CCSCCC----CCCTTCCEEECCSSCCS-SCCCG-------------GGCTTCCEEECCSSCCCCC---------------
T ss_pred Chhhhc----ccCChhcEEECCCCccC-cCCCc-------------ccCccCCEEecCCCccCCc---------------
Confidence 999754 57899999999999998 44431 2467899999999999753
Q ss_pred cccccccccCCceeeccCCcceeecc
Q 046589 545 IPRSLGHLSCSVKLNLSGNKLSVLVP 570 (729)
Q Consensus 545 ip~~~~~l~~L~~L~Ls~N~l~~~~p 570 (729)
+|..+..+++|+.|++++|.+.+..|
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 489 PDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CHHHHhcCcccCEEEecCCCccCCCc
Confidence 34456778999999999999988766
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-42 Score=388.11 Aligned_cols=420 Identities=18% Similarity=0.208 Sum_probs=318.1
Q ss_pred CCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEe
Q 046589 105 LRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184 (729)
Q Consensus 105 ~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L 184 (729)
.+++++++++|.+.+..|..+.++++|++|+|++|++++..|..|+++++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 45788999999988776678888999999999999998888888999999999999999988 56666 7889999999
Q ss_pred eccCCCc-cCCccccCCCCCcEEEccCCCCCCCCccccCCCCCC--CeeeccCCcC--CCCCChhhhccCC-CCCEEEcc
Q 046589 185 CSNSFTG-EMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRL--QDLDLSDNLL--SGSLTVSLFTNLQ-SLSYLDVS 258 (729)
Q Consensus 185 s~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L--~~L~L~~N~l--~~~~~~~~~~~l~-~L~~L~Ls 258 (729)
++|++++ .+|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..+ ..+..+. +...++++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~-~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDP-EGLQDFNTESLHIVFP 173 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCT-TTTTTCCEEEEEEECC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccc-ccccccccceEEEEec
Confidence 9999986 478889999999999999998875 456667777 8899988888 54444 3344332 12234444
Q ss_pred cccccccCC-ccccCCCcCCeecccccc-------ccccccccccCCCCcccc------------------cccceeEEE
Q 046589 259 NNLLSGNIP-PEISHLKKLSDHYLGINQ-------FTGSIQSELGNCKNFKSV------------------LAELQIFTF 312 (729)
Q Consensus 259 ~N~l~~~~p-~~l~~l~~L~~l~l~~n~-------l~~~~~~~l~~l~~l~~~------------------l~~l~l~~l 312 (729)
+|.+.+.++ ..+..+++|+.++++.|. +.+.++ .+..++++... .....+..+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 554443333 233444455555554443 333222 22222222210 001135678
Q ss_pred EccCCCCCCCcchhc-----CCCCCCCEEEccCCcceecCC-CCCcCC---CCCcEEEecCCCCCCCCcccccCCCCCcE
Q 046589 313 SAGMNQLSGPLPSWL-----GKWNQMESVWLNNNQFIGRIP-LEVGNC---SMLKYIRLSNNKLSGSIPRELNDSESLVE 383 (729)
Q Consensus 313 ~l~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p-~~l~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 383 (729)
+++.|.+.|.+|.++ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|++.... .+..+++|++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~ 328 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLH 328 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccE
Confidence 888899998999988 8899999999999998 455 233333 57999999999986432 1267899999
Q ss_pred EEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcc--cCCcccCCCCCCCEEEccCCccccccCcC-ccCCCCCCEEE
Q 046589 384 INLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTG--RIPKEIGNLRSIQILKLNSNFFNGSIPMR-LGDSTSLNILE 460 (729)
Q Consensus 384 L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~ 460 (729)
|++++|.+++..+..+ ..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|.. +..+++|+.|+
T Consensus 329 L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENC---GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp EECCSSCCCTTTTTTC---CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred EEeECCccChhhhhhh---ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 9999999998777655 567889999999999997 56788999999999999999999867754 78899999999
Q ss_pred cccccCCccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccc
Q 046589 461 LGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV 540 (729)
Q Consensus 461 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~l 540 (729)
+++|++++..|..+. ++|+.||+++|+++ .+|.... .+++|+.|++++|+++.
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~------------~l~~L~~L~L~~N~l~~------------ 458 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV------------KLEALQELNVASNQLKS------------ 458 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG------------GCTTCCEEECCSSCCCC------------
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh------------cCCCCCEEECCCCcCCc------------
Confidence 999999988887664 78999999999998 5555443 67889999999999972
Q ss_pred cccccccc-cccccCCceeeccCCcceeecc
Q 046589 541 LTGYIPRS-LGHLSCSVKLNLSGNKLSVLVP 570 (729)
Q Consensus 541 l~g~ip~~-~~~l~~L~~L~Ls~N~l~~~~p 570 (729)
+|.. +..+++|++|++++|++++..+
T Consensus 459 ----l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 459 ----VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp ----CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ----cCHHHhccCCcccEEECcCCCCcccCC
Confidence 3333 6778999999999999998654
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=375.31 Aligned_cols=453 Identities=21% Similarity=0.196 Sum_probs=289.1
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
+..+++|+|++|.+++..+..+.++++|++|||++|+|+++++.+|.++++|++|+|++|+|++..+..|.++++|++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 45678888888888865566788888888888888888888888888888888888888888866667788888888888
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCCCCC-CCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCC----CEEEcc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNG-TVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSL----SYLDVS 258 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L----~~L~Ls 258 (729)
|++|++++..+..|+++++|++|+|++|.++. ..|..++.+++|++|++++|++++ ++...|..+.++ ..++++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCEEECT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc-cccccccchhhhhhhhhhhhcc
Confidence 88888887767778888888888888888865 357778888888888888888874 444555554443 367788
Q ss_pred cccccccCCccccCCCcCCeecccccccccccc-ccccCCCCcc-----------------------ccccccee-----
Q 046589 259 NNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQ-SELGNCKNFK-----------------------SVLAELQI----- 309 (729)
Q Consensus 259 ~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~-~~l~~l~~l~-----------------------~~l~~l~l----- 309 (729)
.|.+....+..+.. ..+..+.+..|.....+. ..+..+..+. .....+..
T Consensus 210 ~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 210 LNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred cCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 88877554444333 233444444442221100 0000000000 00000111
Q ss_pred --------------------EEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCC-------------------C
Q 046589 310 --------------------FTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPL-------------------E 350 (729)
Q Consensus 310 --------------------~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------------------~ 350 (729)
..+....+.+.. ...+.....++.|++.+|.+.+..+. .
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 366 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 366 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC
T ss_pred hhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc
Confidence 111111111110 11222334556666666655432221 1
Q ss_pred CcCCCCCcEEEecCCCCCC--CCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCC-cccC
Q 046589 351 VGNCSMLKYIRLSNNKLSG--SIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIP-KEIG 427 (729)
Q Consensus 351 l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~ 427 (729)
...+++|+.|++++|.+.. ..+..+..+.+|+.+++..|...... ..+..+++|+.++++.|+.....+ ..+.
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS----SNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC----SCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc----ccccccccccchhhhhccccccccccccc
Confidence 2233445555555554432 12333344445555555544433221 122345667777777766554433 4567
Q ss_pred CCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccC-CccCchhhhcCCCCCEEeCCCCcCcccccccccccccccC
Q 046589 428 NLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNL-NGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVN 506 (729)
Q Consensus 428 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~ 506 (729)
.+++++.++++.|.+.+..+..+..+++|+.|+|++|++ .+..|..|..+++|++|||++|++++..|..+.
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~------- 515 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN------- 515 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-------
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHc-------
Confidence 777788888888887777777777777888888887764 334667777778888888888887765444333
Q ss_pred CCCcccCCCCCeEecCCCcCcccCCchhhccccccccccccccccccCCceeeccCCcceeecccccccc-cccccccCC
Q 046589 507 IPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNL-NGLTNLDLS 585 (729)
Q Consensus 507 ~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls 585 (729)
.+++|+.|+|++|++++ ..|..|..+++|++|||++|+|++.+|..|..+ ++|++|+|+
T Consensus 516 -----~l~~L~~L~Ls~N~l~~---------------l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 516 -----SLSSLQVLNMSHNNFFS---------------LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp -----TCTTCCEEECTTSCCCB---------------CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred -----CCCCCCEEECCCCcCCC---------------CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 56677888888887764 345567788899999999999999999988887 689999999
Q ss_pred cccccC
Q 046589 586 YNEFDG 591 (729)
Q Consensus 586 ~N~l~g 591 (729)
+|+|.-
T Consensus 576 ~Np~~C 581 (635)
T 4g8a_A 576 QNDFAC 581 (635)
T ss_dssp TCCBCC
T ss_pred CCCCcc
Confidence 998875
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-40 Score=363.57 Aligned_cols=375 Identities=21% Similarity=0.232 Sum_probs=238.1
Q ss_pred EEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccC-CccccCCCCCcEEEeeccC
Q 046589 110 QVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSL-PSQLGVLTWLETLSLCSNS 188 (729)
Q Consensus 110 l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~L~~L~~L~Ls~N~ 188 (729)
.+.+++.++ .+|. + .++|++|||++|.+++..+..|+++++|++|+|++|.+.+.+ |..|.++++|++|+|++|+
T Consensus 15 ~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 15 AICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 455555555 3454 2 268889999999888888888888889999999988886544 5678888889999999998
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCccc--cCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccC
Q 046589 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIR--LGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNI 266 (729)
Q Consensus 189 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 266 (729)
+++..|..|+++++|++|+|++|.+++..|.. ++.+++|++|++++|.+++..+...+..+++|++|++++|.+++..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 88888888888899999999998888655554 8888889999999888886556555788888999999998888887
Q ss_pred CccccCC--CcCCeecccccccccccccccc--CCCCcccccccceeEEEEccCCCCCCCcchhcCCC---CCCCEEEcc
Q 046589 267 PPEISHL--KKLSDHYLGINQFTGSIQSELG--NCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKW---NQMESVWLN 339 (729)
Q Consensus 267 p~~l~~l--~~L~~l~l~~n~l~~~~~~~l~--~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l---~~L~~L~L~ 339 (729)
|..+..+ .+|+.++++.|.+.+..+..+. .+.. ......+..++++.|.+.+..|..+... .+|+.|+++
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN---PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC---TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred hhhhhccccccccccccccCcccccchhhcccccccc---ccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 8777766 6777888888877654332211 0000 0011124566666666666555554432 566666666
Q ss_pred CCcceecC----------CCCCcC--CCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCC
Q 046589 340 NNQFIGRI----------PLEVGN--CSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQ 407 (729)
Q Consensus 340 ~n~l~~~~----------p~~l~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 407 (729)
+|.+.+.. +..+.. .++|++|++++|++++.+|..+..+++|++|++++|.+++..+..| ..+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~ 324 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF---WGLTH 324 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT---TTCTT
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh---cCccc
Confidence 66543221 111111 1345555555555555555555555555555555555554444333 23444
Q ss_pred CcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCC
Q 046589 408 LEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSY 487 (729)
Q Consensus 408 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~ 487 (729)
|++|+|++|.+++..|..+.++++|++|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.|++++
T Consensus 325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccC
Confidence 55555555555554455555555555555555555554455555555555555555555544444445555555555555
Q ss_pred CcCcccc
Q 046589 488 NNLSRPI 494 (729)
Q Consensus 488 N~l~~~~ 494 (729)
|++++..
T Consensus 405 N~l~~~~ 411 (455)
T 3v47_A 405 NPWDCSC 411 (455)
T ss_dssp SCBCCCT
T ss_pred CCcccCC
Confidence 5555433
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=359.13 Aligned_cols=382 Identities=19% Similarity=0.184 Sum_probs=254.4
Q ss_pred CcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccC-CccccCCCCCcEEEcc
Q 046589 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEM-PSELGDMKQLKSLDFS 209 (729)
Q Consensus 131 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls 209 (729)
-+.++.+++.++..+. + .++|++|+|++|.+++..|..|+++++|++|+|++|.+.+.+ |..|.++++|++|+|+
T Consensus 12 ~~~~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCSSCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcccCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 3567888888877654 2 368999999999999888999999999999999999997544 6789999999999999
Q ss_pred CCCCCCCCccccCCCCCCCeeeccCCcCCCCCC-hhhhccCCCCCEEEcccccccccCCcc-ccCCCcCCeecccccccc
Q 046589 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLT-VSLFTNLQSLSYLDVSNNLLSGNIPPE-ISHLKKLSDHYLGINQFT 287 (729)
Q Consensus 210 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~l~l~~n~l~ 287 (729)
+|.+++..|..|+++++|++|++++|.+++.++ ...|..+++|++|++++|.+++..|.. +..+++|+.++++.|.++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 999998889999999999999999999985433 234889999999999999999887876 889999999999999988
Q ss_pred ccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCC
Q 046589 288 GSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKL 367 (729)
Q Consensus 288 ~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 367 (729)
+..+..+..+.. ..+..++++.|.+.+..+.+++. ..+..+..+++|++|++++|++
T Consensus 168 ~~~~~~l~~l~~-------~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 168 SICEEDLLNFQG-------KHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp CCCTTTSGGGTT-------CEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCC
T ss_pred ccChhhhhcccc-------ccccccccccCcccccchhhccc----------------cccccccccceeeeEecCCCcc
Confidence 766655543321 12344444444444322221110 0001123445677777777777
Q ss_pred CCCCcccccCC---CCCcEEEcCCCCCCCC----------ccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCE
Q 046589 368 SGSIPRELNDS---ESLVEINLDGNMLSGT----------IEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQI 434 (729)
Q Consensus 368 ~~~~p~~~~~l---~~L~~L~L~~N~l~~~----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 434 (729)
++..|..+... .+|+.|++++|.+.+. .+..+..+ ..++|++|++++|.+++..|..+..+++|++
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 303 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL-EASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGG-TTSCCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccc-cccCceEEEecCccccccchhhcccCCCCCE
Confidence 66666555433 5666677766654332 11111111 1245666666666666555666666666666
Q ss_pred EEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCC
Q 046589 435 LKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSH 514 (729)
Q Consensus 435 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 514 (729)
|++++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|++||+++|++++..
T Consensus 304 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------------- 363 (455)
T 3v47_A 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG-------------------- 363 (455)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC--------------------
T ss_pred EECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC--------------------
Confidence 666666666555556666666666666666665555555666666666666666554322
Q ss_pred CCCeEecCCCcCcccCCchhhccccccccccccccccccCCceeeccCCcceeecccccccccccccccCCcccccC
Q 046589 515 NYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 515 ~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 591 (729)
|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++
T Consensus 364 -------------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 364 -------------------------------DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp -------------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -------------------------------hhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 3334445555556666666655555555556666666666666554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=365.12 Aligned_cols=429 Identities=21% Similarity=0.193 Sum_probs=316.0
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
+.++++|+|++|.+++..+..+.++++|++|+|++|++++.++..|.++++|++|+|++|++++..+..|+++++|++|+
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 67799999999999976667899999999999999999999999999999999999999999977777899999999999
Q ss_pred eeccCCCc-cCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCC----eeeccCCcCCCCCChhhhccCCCCCEEEcc
Q 046589 184 LCSNSFTG-EMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQ----DLDLSDNLLSGSLTVSLFTNLQSLSYLDVS 258 (729)
Q Consensus 184 Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 258 (729)
|++|.+++ .+|..+..+++|++|++++|++++..|..+..+.+++ .++++.|.++ .++...+. ...+..++++
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~ 232 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLR 232 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEE
T ss_pred cccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhh
Confidence 99999975 4688899999999999999999988888887765544 6788888886 34433332 2234455555
Q ss_pred cccccccC-CccccCCCcC---------------------------------------------------------Ceec
Q 046589 259 NNLLSGNI-PPEISHLKKL---------------------------------------------------------SDHY 280 (729)
Q Consensus 259 ~N~l~~~~-p~~l~~l~~L---------------------------------------------------------~~l~ 280 (729)
+|...... +..+..+..+ ..+.
T Consensus 233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 312 (635)
T 4g8a_A 233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS 312 (635)
T ss_dssp SCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred cccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence 54322110 0111111111 1111
Q ss_pred cccccccccccccccCCCCcccc------------cccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCccee--c
Q 046589 281 LGINQFTGSIQSELGNCKNFKSV------------LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIG--R 346 (729)
Q Consensus 281 l~~n~l~~~~~~~l~~l~~l~~~------------l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~ 346 (729)
+..+.+.... .+..+..+... .....+..+.+..|.... +.....+++|+.+++++|.+.. .
T Consensus 313 ~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 313 LVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp EESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC--BCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred cccccccccc--ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC--Ccccccccccccchhhccccccccc
Confidence 1111111000 00000000000 000001222333333222 2233457899999999998853 3
Q ss_pred CCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCccc
Q 046589 347 IPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI 426 (729)
Q Consensus 347 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 426 (729)
.+..+..+.+|++|+++.|.+.. .+..+..+++|+.+++..|......+.. .+..+++++.+++++|.+.+..+..+
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~--~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS--VFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSC--TTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred cccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccc--cccccccccccccccccccccccccc
Confidence 45556677899999999999874 5567888999999999998877655432 24667889999999999999999999
Q ss_pred CCCCCCCEEEccCCccc-cccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCccccccccccccccc
Q 046589 427 GNLRSIQILKLNSNFFN-GSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEV 505 (729)
Q Consensus 427 ~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~ 505 (729)
..+++|++|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..+.
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~------ 539 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK------ 539 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGT------
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHh------
Confidence 99999999999999854 45788999999999999999999999999999999999999999999875443333
Q ss_pred CCCCcccCCCCCeEecCCCcCcccCCchhhccccccccccccccccc-cCCceeeccCCcceee
Q 046589 506 NIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHL-SCSVKLNLSGNKLSVL 568 (729)
Q Consensus 506 ~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l-~~L~~L~Ls~N~l~~~ 568 (729)
.+++|+.||+++|++++..| ..+..+ ++|++|+|++|.++..
T Consensus 540 ------~l~~L~~L~Ls~N~l~~~~~---------------~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 540 ------CLNSLQVLDYSLNHIMTSKK---------------QELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp ------TCTTCCEEECTTSCCCBCCS---------------SCTTCCCTTCCEEECTTCCBCCS
T ss_pred ------CCCCCCEEECCCCcCCCCCH---------------HHHHhhhCcCCEEEeeCCCCccc
Confidence 67889999999999986544 445555 6799999999999864
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-39 Score=365.31 Aligned_cols=420 Identities=19% Similarity=0.184 Sum_probs=317.9
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
..+++.+++++|.+.+..+..+.++++|++|+|++|++++..|.+|.++++|++|+|++|+++ .+|.. .+++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 356889999999999877789999999999999999999999999999999999999999998 67776 899999999
Q ss_pred eeccCCCc-cCCccccCCCCCcEEEccCCCCCCCCccccCCCCCC--CeeeccCCcC--CCCCChhhhccCC--CCCEEE
Q 046589 184 LCSNSFTG-EMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRL--QDLDLSDNLL--SGSLTVSLFTNLQ--SLSYLD 256 (729)
Q Consensus 184 Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L--~~L~L~~N~l--~~~~~~~~~~~l~--~L~~L~ 256 (729)
|++|++++ .+|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..+ ..+..+. .| .++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~-~~l~~l~~~~l-~l~ 202 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGET-ESLQIPNTTVL-HLV 202 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSC-CEEEECCEEEE-EEE
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCc-ccccccCcceE-EEE
Confidence 99999986 4568999999999999999999863 34555555 9999999998 65444 4455443 22 445
Q ss_pred cccccccccCCc-cccCCCcCCeecccccc-----ccccccccccCCCCcc------------------cccccceeEEE
Q 046589 257 VSNNLLSGNIPP-EISHLKKLSDHYLGINQ-----FTGSIQSELGNCKNFK------------------SVLAELQIFTF 312 (729)
Q Consensus 257 Ls~N~l~~~~p~-~l~~l~~L~~l~l~~n~-----l~~~~~~~l~~l~~l~------------------~~l~~l~l~~l 312 (729)
+++|.+.+.++. .+..+++|+.++++.|. +.+.+ ..+..++.+. .......+..+
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L 281 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHH-HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence 666666554442 34455666666665553 11100 1111111111 00111257788
Q ss_pred EccCCCCCCCcchhc-----CCCCCCCEEEccCCcceecCCC-CCc---CCCCCcEEEecCCCCCCCCcccccCCCCCcE
Q 046589 313 SAGMNQLSGPLPSWL-----GKWNQMESVWLNNNQFIGRIPL-EVG---NCSMLKYIRLSNNKLSGSIPRELNDSESLVE 383 (729)
Q Consensus 313 ~l~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p~-~l~---~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 383 (729)
+++.|.+.|.+|.++ .+++.|+.+++..+.+ .+|. .+. ...+|++|++++|.+.... ....+++|++
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 357 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTF 357 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred EEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceE
Confidence 999999999999887 5666666666666665 3331 111 1257999999999986432 1267899999
Q ss_pred EEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCccc--CCcccCCCCCCCEEEccCCccccccCc-CccCCCCCCEEE
Q 046589 384 INLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGR--IPKEIGNLRSIQILKLNSNFFNGSIPM-RLGDSTSLNILE 460 (729)
Q Consensus 384 L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~ 460 (729)
|++++|.+++.++..+ .++++|++|++++|++++. +|..+.++++|++|++++|++++.+|. .+..+++|+.|+
T Consensus 358 L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~ 434 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGC---STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434 (562)
T ss_dssp EECCSSCCCTTTTTTC---CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred EECCCCccccchhhhh---cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence 9999999998776655 5677899999999999963 356799999999999999999985665 578899999999
Q ss_pred cccccCCccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccc
Q 046589 461 LGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVV 540 (729)
Q Consensus 461 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~l 540 (729)
+++|++++.+|..+. ++|+.||+++|+++ .+|.... .+++|+.|++++|+++.
T Consensus 435 l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~------------~l~~L~~L~L~~N~l~~------------ 487 (562)
T 3a79_B 435 LSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT------------HLQALQELNVASNQLKS------------ 487 (562)
T ss_dssp CCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTT------------SSCCCSEEECCSSCCCC------------
T ss_pred CCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhc------------CCCCCCEEECCCCCCCC------------
Confidence 999999987776654 68999999999997 4544433 67789999999999972
Q ss_pred cccccccc-cccccCCceeeccCCcceeecc
Q 046589 541 LTGYIPRS-LGHLSCSVKLNLSGNKLSVLVP 570 (729)
Q Consensus 541 l~g~ip~~-~~~l~~L~~L~Ls~N~l~~~~p 570 (729)
+|.. +..+++|+.|++++|.+.+..+
T Consensus 488 ----l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 488 ----VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp ----CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred ----CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 3333 6788999999999999998655
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=346.48 Aligned_cols=402 Identities=24% Similarity=0.272 Sum_probs=231.3
Q ss_pred CCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCC-------------CEEeccCCcCcccCCc
Q 046589 105 LRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRL-------------KMLSLGENQLSGSLPS 171 (729)
Q Consensus 105 ~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------~~L~Ls~N~l~~~~p~ 171 (729)
.+++.++++.|.+ |.+|+.++++++|++|++++|.+.+..|..++++++| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4577788888888 7888888888888888888888888888888877764 888888888874 454
Q ss_pred cccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCC
Q 046589 172 QLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQS 251 (729)
Q Consensus 172 ~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~ 251 (729)
. .++|++|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|.+++ +| .|..+++
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp--~~~~l~~ 154 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP--ELQNSSF 154 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC--CCTTCTT
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc--ccCCCCC
Confidence 2 3678888888888885 6653 3778888888888874 3321 1678888888888874 66 3788888
Q ss_pred CCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCC
Q 046589 252 LSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWN 331 (729)
Q Consensus 252 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~ 331 (729)
|++|++++|++++ +|..+ .+|+.++++.|++++ +| .+..++++ ..++++.|.+.+ +|... .
T Consensus 155 L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L---------~~L~l~~N~l~~-l~~~~---~ 215 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFL---------TAIYADNNSLKK-LPDLP---L 215 (454)
T ss_dssp CCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTC---------CEEECCSSCCSS-CCCCC---T
T ss_pred CCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCC---------CEEECCCCcCCc-CCCCc---C
Confidence 8888888888875 55543 477788888888775 34 35454443 566777777765 44322 4
Q ss_pred CCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEE
Q 046589 332 QMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKL 411 (729)
Q Consensus 332 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 411 (729)
+|++|++++|.+. .+| .++.+++|++|++++|++++ +|.. .++|+.|++++|.+++.+ .. +++|++|
T Consensus 216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~-~~------~~~L~~L 282 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLP-EL------PQSLTFL 282 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCC-CC------CTTCCEE
T ss_pred cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccC-cc------cCcCCEE
Confidence 7788888888777 555 37777888888888888775 3432 367788888888877632 21 2567788
Q ss_pred EcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCc
Q 046589 412 DLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491 (729)
Q Consensus 412 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 491 (729)
++++|++++. |. ..++|++|++++|++++ ++. ..++|+.|++++|++++ +|.. +++|+.|++++|+++
T Consensus 283 ~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 283 DVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp ECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ECcCCccCcc-cC---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence 8888887752 21 12577888888887774 221 12477888888888875 5543 467888888888776
Q ss_pred ccccccccccccccCCCCcccCCCCCeEecCCCcCcc--cCCchhhcccc-ccccccccccccccCCceeeccCCccee-
Q 046589 492 RPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSG--PIPKELGSCVV-VLTGYIPRSLGHLSCSVKLNLSGNKLSV- 567 (729)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g--~~p~~~~~~~~-ll~g~ip~~~~~l~~L~~L~Ls~N~l~~- 567 (729)
+ +|. .+.+|+.|++++|++++ .+|..++.+.. -..|.+|.. +++|+.||+++|++++
T Consensus 351 ~-lp~---------------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 351 E-VPE---------------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL---PQNLKQLHVETNPLREF 411 (454)
T ss_dssp C-CCC---------------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------
T ss_pred c-ccc---------------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccc---cCcCCEEECCCCcCCcc
Confidence 3 222 24567788888888877 56665544321 133444442 3556666777777666
Q ss_pred -ecccccccccccccccCCcccccC
Q 046589 568 -LVPTSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 568 -~~p~~~~~l~~L~~L~Ls~N~l~g 591 (729)
.+|. .++.|.+++|.+.+
T Consensus 412 ~~iP~------sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 412 PDIPE------SVEDLRMNSERVVD 430 (454)
T ss_dssp -------------------------
T ss_pred ccchh------hHhheeCcCcccCC
Confidence 3443 24444555555544
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=346.88 Aligned_cols=377 Identities=24% Similarity=0.276 Sum_probs=273.4
Q ss_pred cCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCC-------------cEEEeeccCCC
Q 046589 124 LLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWL-------------ETLSLCSNSFT 190 (729)
Q Consensus 124 ~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L-------------~~L~Ls~N~l~ 190 (729)
.-...++|++|++++|.+ +.+|++++++++|++|++++|.+.+.+|..++.+.+| ++|++++|.++
T Consensus 6 ~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 6 RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred cccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 334568999999999999 7788899999999999999999999999999998875 99999999998
Q ss_pred ccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccc
Q 046589 191 GEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI 270 (729)
Q Consensus 191 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 270 (729)
+ +|.. .++|++|++++|.+++ +|.. +++|++|++++|.+++ ++. ..++|++|++++|.+++ +| .+
T Consensus 85 ~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~ 149 (454)
T 1jl5_A 85 S-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-EL 149 (454)
T ss_dssp C-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CC
T ss_pred c-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-cc
Confidence 5 5542 4799999999999996 6753 4789999999999984 441 12799999999999996 77 59
Q ss_pred cCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCC
Q 046589 271 SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLE 350 (729)
Q Consensus 271 ~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 350 (729)
+.+++|+.++++.|++++ +|.... .+..++++.|.+.+ +| .++.+++|+.|++++|++.+ +|..
T Consensus 150 ~~l~~L~~L~l~~N~l~~-lp~~~~------------~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~ 213 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKK-LPDLPP------------SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL 213 (454)
T ss_dssp TTCTTCCEEECCSSCCSC-CCCCCT------------TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC
T ss_pred CCCCCCCEEECCCCcCcc-cCCCcc------------cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC
Confidence 999999999999999985 444322 34678899999987 56 68999999999999999986 4443
Q ss_pred CcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCC
Q 046589 351 VGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLR 430 (729)
Q Consensus 351 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 430 (729)
.++|++|++++|+++ .+| .+..+++|++|++++|++++.+ .. +++|++|++++|++++ +|.. ++
T Consensus 214 ---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~-~~------~~~L~~L~l~~N~l~~-l~~~---~~ 277 (454)
T 1jl5_A 214 ---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLP-DL------PPSLEALNVRDNYLTD-LPEL---PQ 277 (454)
T ss_dssp ---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC-SC------CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred ---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCccc-cc------ccccCEEECCCCcccc-cCcc---cC
Confidence 258999999999998 567 4889999999999999998743 22 3679999999999996 5543 48
Q ss_pred CCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCc
Q 046589 431 SIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDL 510 (729)
Q Consensus 431 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~ 510 (729)
+|++|++++|++++ +|.. .++|+.|++++|++++ ++. -.++|+.|++++|++++ +|.
T Consensus 278 ~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~-------------- 334 (454)
T 1jl5_A 278 SLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPA-------------- 334 (454)
T ss_dssp TCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCC--------------
T ss_pred cCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-ccc--------------
Confidence 99999999999986 3321 2689999999999985 332 12589999999999985 332
Q ss_pred ccCCCCCeEecCCCcCcccCCchhhccccccccccccccccccCCceeeccCCccee--ecccccccc------------
Q 046589 511 SYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSV--LVPTSFGNL------------ 576 (729)
Q Consensus 511 ~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l------------ 576 (729)
.+++|+.|++++|++++ + |. .+++|++|++++|++++ .+|..+..+
T Consensus 335 -~~~~L~~L~L~~N~l~~-l---------------p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 335 -LPPRLERLIASFNHLAE-V---------------PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394 (454)
T ss_dssp -CCTTCCEEECCSSCCSC-C---------------CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------
T ss_pred -cCCcCCEEECCCCcccc-c---------------cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccc
Confidence 24679999999999973 3 33 25789999999999999 899999888
Q ss_pred -cccccccCCcccccC
Q 046589 577 -NGLTNLDLSYNEFDG 591 (729)
Q Consensus 577 -~~L~~L~Ls~N~l~g 591 (729)
++|+.|++++|++++
T Consensus 395 ~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 395 PQNLKQLHVETNPLRE 410 (454)
T ss_dssp ----------------
T ss_pred cCcCCEEECCCCcCCc
Confidence 889999999999987
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=335.61 Aligned_cols=308 Identities=19% Similarity=0.171 Sum_probs=161.9
Q ss_pred cCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCC
Q 046589 124 LLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQL 203 (729)
Q Consensus 124 ~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L 203 (729)
.+.++++|++|++++|.+++.+ .++.+++|++|+|++|++++ +| ++.+++|++|++++|++++. | ++++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 4444555555555555555431 34555555555555555553 22 45555555555555555532 2 4555555
Q ss_pred cEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeecccc
Q 046589 204 KSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGI 283 (729)
Q Consensus 204 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~ 283 (729)
++|++++|++++ +| ++.+++|++|++++|.+++ ++ +..+++|++|++++|...+.+ .+..+++|+.++++.
T Consensus 109 ~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 555555555553 22 4555555555555555543 22 344555555555555333332 244445555555555
Q ss_pred ccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEec
Q 046589 284 NQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLS 363 (729)
Q Consensus 284 n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 363 (729)
|++++. + +..++. +..++++.|.+++. .++.+++|+.|++++|++.+ +| +..+++|++|+++
T Consensus 180 n~l~~l-~--l~~l~~---------L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 180 NKITEL-D--VSQNKL---------LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp SCCCCC-C--CTTCTT---------CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred Ccccee-c--cccCCC---------CCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence 444431 1 111111 12233333333332 24556677777777777766 44 6667777777777
Q ss_pred CCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccc
Q 046589 364 NNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFN 443 (729)
Q Consensus 364 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 443 (729)
+|++++.. +..+++|+.|++++|. |+.|++++|.+.+.+| ++.+++|+.|++++|...
T Consensus 242 ~N~l~~~~---~~~l~~L~~L~l~~n~-----------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 242 VNPLTELD---VSTLSKLTTLHCIQTD-----------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp SSCCSCCC---CTTCTTCCEEECTTCC-----------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred CCcCCCcC---HHHCCCCCEEeccCCC-----------------CCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence 77777543 3445566666665543 4456777777666655 466777888888887766
Q ss_pred cccCcC--------ccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCc
Q 046589 444 GSIPMR--------LGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491 (729)
Q Consensus 444 ~~~p~~--------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 491 (729)
+.+|.. +..+++|+.|++++|++++. + +..+++|+.||+++|+++
T Consensus 300 ~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 300 YLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCC
T ss_pred ceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCC
Confidence 666532 22334455555555555542 2 445555555555555554
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=329.81 Aligned_cols=301 Identities=26% Similarity=0.368 Sum_probs=153.1
Q ss_pred CCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEE
Q 046589 128 LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLD 207 (729)
Q Consensus 128 L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 207 (729)
+++++.|++++|.+...+ .+..+++|++|+|++|.+++. |. ++.+++|++|++++|.+++..| +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 445666666666555432 245556666666666666533 22 5566666666666666653332 55666666666
Q ss_pred ccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeecccccccc
Q 046589 208 FSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFT 287 (729)
Q Consensus 208 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~ 287 (729)
+++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|+++ |.+.+. ..+..+++|+.++++.|.++
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence 66666553322 5556666666666665552 22 25555666666654 233321 12444555555555444433
Q ss_pred ccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCC
Q 046589 288 GSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKL 367 (729)
Q Consensus 288 ~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 367 (729)
+. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|++
T Consensus 191 ~~-----------------------------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 191 DI-----------------------------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233 (466)
T ss_dssp CC-----------------------------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred CC-----------------------------------hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCc
Confidence 11 112334445555555555544333 44455555555555555
Q ss_pred CCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccC
Q 046589 368 SGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIP 447 (729)
Q Consensus 368 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 447 (729)
++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+..+
T Consensus 234 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 304 (466)
T 1o6v_A 234 KDI--GTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG
T ss_pred ccc--hhhhcCCCCCEEECCCCccccchh-----hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh
Confidence 432 234455555555555555544332 2334455555555555554322 4555555555555555554322
Q ss_pred cCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcc
Q 046589 448 MRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSR 492 (729)
Q Consensus 448 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 492 (729)
+..+++|+.|+|++|++++..| +..+++|+.|++++|++++
T Consensus 305 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 305 --ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp --GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred --hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 4455555555555555554443 4455555555555555543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=325.19 Aligned_cols=345 Identities=26% Similarity=0.346 Sum_probs=263.4
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
+.+++.++++++.+.. +| .+..+++|++|+|++|.+++.++ +.++++|++|++++|++++..| ++.+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 4568899999998874 44 47889999999999999998765 8999999999999999985544 99999999999
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 263 (729)
+++|++++. +. +.++++|++|++++|.+.+ ++ .++.+++|++|+++ |.+.+ ++ .+..+++|++|++++|.++
T Consensus 119 L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~-~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 119 LFNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTD-LK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp CCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCC-CG--GGTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccC-ch--hhccCCCCCEEECcCCcCC
Confidence 999999854 33 9999999999999999985 44 48999999999997 45543 32 3889999999999999988
Q ss_pred ccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcc
Q 046589 264 GNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQF 343 (729)
Q Consensus 264 ~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 343 (729)
+. ..+..+++|+.++++.|.+++..+ ++.+++|+.|++++|++
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~-----------------------------------~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP-----------------------------------LGILTNLDELSLNGNQL 233 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG-----------------------------------GGGCTTCCEEECCSSCC
T ss_pred CC--hhhccCCCCCEEEecCCccccccc-----------------------------------ccccCCCCEEECCCCCc
Confidence 53 357888899998888887764322 33456677777777776
Q ss_pred eecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCC
Q 046589 344 IGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIP 423 (729)
Q Consensus 344 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 423 (729)
.+. ..+..+++|++|++++|++++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+
T Consensus 234 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~~~ 304 (466)
T 1o6v_A 234 KDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISP 304 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCSCCGG
T ss_pred ccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-----ccCCCccCeEEcCCCcccCchh
Confidence 643 246667777777777777775544 6677777777777777776543 3456677777888777775433
Q ss_pred cccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCccccccccccccc
Q 046589 424 KEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFH 503 (729)
Q Consensus 424 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~ 503 (729)
+..+++|+.|++++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| .
T Consensus 305 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~----- 371 (466)
T 1o6v_A 305 --ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L----- 371 (466)
T ss_dssp --GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--G-----
T ss_pred --hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--h-----
Confidence 6677778888888887776555 56777788888888877754 367777788888888887776443 1
Q ss_pred ccCCCCcccCCCCCeEecCCCcCcc
Q 046589 504 EVNIPDLSYSHNYRKFDLSYNMLSG 528 (729)
Q Consensus 504 ~~~~~~~~~~~~l~~ldls~N~l~g 528 (729)
..+++|+.+++++|.+++
T Consensus 372 -------~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 372 -------ANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -------TTCTTCCEEECCCEEEEC
T ss_pred -------hcCCCCCEEeccCCcccC
Confidence 255667778888887776
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=325.69 Aligned_cols=347 Identities=19% Similarity=0.169 Sum_probs=273.1
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
+.+++++++++|.+++. | .+..+++|++|++++|++++.+ ++.+++|++|++++|++++. | ++.+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 56799999999999974 4 6899999999999999999963 88999999999999999964 4 89999999999
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 263 (729)
+++|++++ +| ++++++|++|++++|++++. + ++.+++|++|++++|...+.++ +..+++|++|++++|+++
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc
Confidence 99999996 44 89999999999999999964 3 8899999999999997665663 778999999999999999
Q ss_pred ccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcc
Q 046589 264 GNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQF 343 (729)
Q Consensus 264 ~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 343 (729)
+ +| +..+++|+.++++.|.+++. .+..+++ +..++++.|++.+ +| ++.+++|+.|++++|++
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~---------L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQ---------LTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTT---------CSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred e-ec--cccCCCCCEEECcCCcCCee---ccccCCC---------CCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence 7 45 88999999999999999875 2444444 3678999999998 56 88999999999999999
Q ss_pred eecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCC
Q 046589 344 IGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIP 423 (729)
Q Consensus 344 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 423 (729)
.+.. ++.+++|+.|++++|++ +.|++++|.+.+.+| +..+++|+.|++++|...+.+|
T Consensus 246 ~~~~---~~~l~~L~~L~l~~n~L--------------~~L~l~~n~~~~~~~-----~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 246 TELD---VSTLSKLTTLHCIQTDL--------------LEIDLTHNTQLIYFQ-----AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp SCCC---CTTCTTCCEEECTTCCC--------------SCCCCTTCTTCCEEE-----CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CCcC---HHHCCCCCEEeccCCCC--------------CEEECCCCccCCccc-----ccccccCCEEECCCCcccceec
Confidence 8754 45567777777766543 334555555444333 1234555556666665444333
Q ss_pred c--------ccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCccccc
Q 046589 424 K--------EIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPIL 495 (729)
Q Consensus 424 ~--------~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~ 495 (729)
. .++++++|++|++++|++++ ++ ++.+++|+.|++++|++++ ++.|..|++++|.++|..
T Consensus 304 ~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~~- 371 (457)
T 3bz5_A 304 CQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAEG- 371 (457)
T ss_dssp CTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEEE-
T ss_pred cCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEecc-
Confidence 2 24556788999999999987 33 7888999999999999885 245666788888887641
Q ss_pred ccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhh
Q 046589 496 SKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELG 535 (729)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~ 535 (729)
.+..+..+++++|+++|.+|.++.
T Consensus 372 ----------------~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 372 ----------------QTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp ----------------EEEECCCBCCBTTBEEEECCTTCB
T ss_pred ----------------eeeecCccccccCcEEEEcChhHh
Confidence 223456678899999888887653
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=323.86 Aligned_cols=322 Identities=19% Similarity=0.178 Sum_probs=278.6
Q ss_pred CcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccC
Q 046589 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSG 210 (729)
Q Consensus 131 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 210 (729)
-+.++.+++.++.++. .+ .+++++|+|++|++++..|..|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 13 ~~~v~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPE-GI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCSSCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCcCCC-CC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 4678888888887654 33 25899999999999988888999999999999999999988899999999999999999
Q ss_pred CCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccc
Q 046589 211 NGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSI 290 (729)
Q Consensus 211 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~ 290 (729)
|.++...+..|.++++|++|+|++|.+++ ++...|..+++|++|++++|.+.+..|..|..+++|+.++++.|.+++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 166 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-- 166 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS--
T ss_pred CcCCccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc--
Confidence 99986666678999999999999999974 444778899999999999999988888888888888888877776542
Q ss_pred cccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCC
Q 046589 291 QSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGS 370 (729)
Q Consensus 291 ~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 370 (729)
..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 167 -------------------------------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 167 -------------------------------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp -------------------------------CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred -------------------------------cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence 3344567788999999999999988888899999999999999998888
Q ss_pred CcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCc
Q 046589 371 IPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRL 450 (729)
Q Consensus 371 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 450 (729)
+|.......+|+.|++++|.+++.++..+ ..+++|++|+|++|.+++..+..+.++++|+.|+|++|++++..|..+
T Consensus 216 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAV---RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp ECTTTTTTCCCSEEEEESSCCCSCCHHHH---TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred cCcccccCccccEEECcCCcccccCHHHh---cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 88777777799999999999987665555 556789999999999998888889999999999999999998889999
Q ss_pred cCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcc
Q 046589 451 GDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSR 492 (729)
Q Consensus 451 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 492 (729)
..+++|+.|+|++|++++..+..|..+++|+.|++++|+++.
T Consensus 293 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred cCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 999999999999999998777888999999999999999874
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=324.37 Aligned_cols=323 Identities=19% Similarity=0.182 Sum_probs=269.8
Q ss_pred EEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccC
Q 046589 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188 (729)
Q Consensus 109 ~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 188 (729)
.++.+++.+. .+|..+. +++++|||++|.+++..+..|.++++|++|+|++|.+++..|..|+++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 3555556665 4555443 588999999999998888889999999999999999988888899999999999999999
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCc
Q 046589 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPP 268 (729)
Q Consensus 189 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 268 (729)
+++..+..|.++++|++|+|++|.+.+..|..|..+++|++|++++|.++ .++...|..+++|++|++++|.+++..+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChh
Confidence 98666667888999999999999998888888999999999999999887 44446788899999999999998876667
Q ss_pred cccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCC
Q 046589 269 EISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIP 348 (729)
Q Consensus 269 ~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 348 (729)
.+..+++|+.++++.|.+.+. .+..+..+++|+.|++++|.+.+.+|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~---------------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAI---------------------------------RDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEE---------------------------------CTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred HhcccCCCcEEeCCCCcCcEe---------------------------------ChhhcccCcccceeeCCCCccccccC
Confidence 788888888888877766532 22345566788899999988887777
Q ss_pred CCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCC
Q 046589 349 LEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGN 428 (729)
Q Consensus 349 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 428 (729)
.......+|++|++++|+++...+..+..+++|+.|+|++|.+++..+..| ..+++|++|+|++|++++..|..|.+
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML---HELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC---TTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc---cccccCCEEECCCCccceECHHHhcC
Confidence 777777799999999999997666788999999999999999987766655 56778999999999999988999999
Q ss_pred CCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCc
Q 046589 429 LRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIP 471 (729)
Q Consensus 429 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 471 (729)
+++|+.|++++|++++..+..+..+++|+.|+|++|.+....+
T Consensus 295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 9999999999999997777788899999999999999986543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=305.68 Aligned_cols=312 Identities=18% Similarity=0.213 Sum_probs=210.7
Q ss_pred CCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcE
Q 046589 126 FDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKS 205 (729)
Q Consensus 126 ~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 205 (729)
..++++++|++++|.++.+++..|.++++|++|+|++|.+++..|..|+.+++|++|+|++|++++..|..|.++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 34678888888888888877777788888888888888888777778888888888888888888777777888888888
Q ss_pred EEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeecccccc
Q 046589 206 LDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQ 285 (729)
Q Consensus 206 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~ 285 (729)
|++++|.++...+..|..+++|++|++++|.++ .++...|..+++|++|++++|.+++. .+..+++|+.++++.|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 888888887444444677888888888888876 34446677777888888877776643 13334444444444443
Q ss_pred ccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCC
Q 046589 286 FTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNN 365 (729)
Q Consensus 286 l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 365 (729)
+ .+. ...++|++|++++|
T Consensus 198 l---------------------------------------------------------~~~-----~~~~~L~~L~l~~n 215 (390)
T 3o6n_A 198 L---------------------------------------------------------STL-----AIPIAVEELDASHN 215 (390)
T ss_dssp C---------------------------------------------------------SEE-----ECCSSCSEEECCSS
T ss_pred c---------------------------------------------------------ccc-----CCCCcceEEECCCC
Confidence 3 221 11124455555555
Q ss_pred CCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccc
Q 046589 366 KLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGS 445 (729)
Q Consensus 366 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 445 (729)
++... |.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++
T Consensus 216 ~l~~~-~~~--~~~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 286 (390)
T 3o6n_A 216 SINVV-RGP--VNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA- 286 (390)
T ss_dssp CCCEE-ECC--CCSSCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-
T ss_pred eeeec-ccc--ccccccEEECCCCCCccc-----HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-
Confidence 54432 221 124555566666655542 123445667777777777776667777777777777777777763
Q ss_pred cCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCc
Q 046589 446 IPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNM 525 (729)
Q Consensus 446 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~ 525 (729)
+|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++.. + +..+++|+.+++++|.
T Consensus 287 ~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--------------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 287 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--------------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--------------CCTTCCCSEEECCSSC
T ss_pred cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--------------chhhccCCEEEcCCCC
Confidence 4555566777777777777776 5566677777777777777777631 1 2245667777888777
Q ss_pred Ccc
Q 046589 526 LSG 528 (729)
Q Consensus 526 l~g 528 (729)
+.+
T Consensus 351 ~~~ 353 (390)
T 3o6n_A 351 WDC 353 (390)
T ss_dssp EEH
T ss_pred ccc
Confidence 765
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=294.40 Aligned_cols=307 Identities=24% Similarity=0.353 Sum_probs=187.1
Q ss_pred CCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCc
Q 046589 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLK 204 (729)
Q Consensus 125 l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 204 (729)
+..+++|++|++++|.+.... .+..+++|++|++++|++++ +|. +..+++|++|++++|.++. + +.+.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccccch--hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 346677888888888877653 36778888888888888874 343 7788888888888888774 3 3577888888
Q ss_pred EEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccc
Q 046589 205 SLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGIN 284 (729)
Q Consensus 205 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n 284 (729)
+|++++|.+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.++++.|
T Consensus 114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 888888887743 33 7778888888888875543333 36777778888877777664322 555556665555555
Q ss_pred cccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecC
Q 046589 285 QFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSN 364 (729)
Q Consensus 285 ~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 364 (729)
.+++. +. +..+++|+.|++++|.+.+..+ +..+++|++|++++
T Consensus 188 ~l~~~----------------------------------~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 188 QIEDI----------------------------------SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230 (347)
T ss_dssp CCCCC----------------------------------GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred ccccc----------------------------------cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccC
Confidence 44311 11 3334555666666666554333 55556666666666
Q ss_pred CCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCcccc
Q 046589 365 NKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG 444 (729)
Q Consensus 365 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 444 (729)
|++++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|.+++
T Consensus 231 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 231 NKITDLSP--LANLSQLTWLEIGTNQISDI-----NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCG
T ss_pred CccCCCcc--hhcCCCCCEEECCCCccCCC-----hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCC
Confidence 66654332 55556666666666655542 1223455556666666655542 235555566666666665555
Q ss_pred ccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCc
Q 046589 445 SIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491 (729)
Q Consensus 445 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 491 (729)
..|..+..+++|+.|++++|++++..| +..+++|+.||+++|+|+
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 555555555566666666666554444 555555666666655543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=299.67 Aligned_cols=315 Identities=20% Similarity=0.151 Sum_probs=255.8
Q ss_pred CCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCee
Q 046589 151 NLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDL 230 (729)
Q Consensus 151 ~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 230 (729)
.++++++|++++|.++...+..+..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46789999999999985444557889999999999999998888899999999999999999998888889999999999
Q ss_pred eccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeE
Q 046589 231 DLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIF 310 (729)
Q Consensus 231 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~ 310 (729)
++++|.++ .++...|..+++|++|++++|.+++..|..+..+++|+
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--------------------------------- 168 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ--------------------------------- 168 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC---------------------------------
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC---------------------------------
Confidence 99999987 67767778888999999888887755555555554444
Q ss_pred EEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCC
Q 046589 311 TFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNM 390 (729)
Q Consensus 311 ~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 390 (729)
+|++++|++.+. .+..+++|++|++++|.+++ +...++|+.|++++|.
T Consensus 169 ------------------------~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 169 ------------------------NLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNS 216 (390)
T ss_dssp ------------------------EEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSC
T ss_pred ------------------------EEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCe
Confidence 444444444432 24556789999999999874 3345689999999999
Q ss_pred CCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccC
Q 046589 391 LSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSI 470 (729)
Q Consensus 391 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 470 (729)
+...... ..++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|+.|+|++|++++ +
T Consensus 217 l~~~~~~------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~ 287 (390)
T 3o6n_A 217 INVVRGP------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 287 (390)
T ss_dssp CCEEECC------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-E
T ss_pred eeecccc------ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-c
Confidence 9865332 246799999999999864 678999999999999999998889999999999999999999985 6
Q ss_pred chhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccccccccccccc
Q 046589 471 PEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLG 550 (729)
Q Consensus 471 p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~ 550 (729)
|..+..+++|+.|++++|+++. +|.... .+++|+.|++++|+++.. | +.
T Consensus 288 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~------------~l~~L~~L~L~~N~i~~~-~-----------------~~ 336 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHNHLLH-VERNQP------------QFDRLENLYLDHNSIVTL-K-----------------LS 336 (390)
T ss_dssp ECSSSCCTTCCEEECCSSCCCC-CGGGHH------------HHTTCSEEECCSSCCCCC-C-----------------CC
T ss_pred CcccCCCCCCCEEECCCCccee-cCcccc------------ccCcCCEEECCCCcccee-C-----------------ch
Confidence 7777889999999999999974 333322 567899999999999863 2 34
Q ss_pred cccCCceeeccCCcceeeccc
Q 046589 551 HLSCSVKLNLSGNKLSVLVPT 571 (729)
Q Consensus 551 ~l~~L~~L~Ls~N~l~~~~p~ 571 (729)
.+++|+.|++++|++.+....
T Consensus 337 ~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp TTCCCSEEECCSSCEEHHHHH
T ss_pred hhccCCEEEcCCCCccchhHH
Confidence 578899999999999987543
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=318.78 Aligned_cols=289 Identities=17% Similarity=0.194 Sum_probs=173.0
Q ss_pred CCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEE
Q 046589 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSL 206 (729)
Q Consensus 127 ~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 206 (729)
.+++++.|++++|.+..+++..|.++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35677788888887777777777777888888888888877667777788888888888888877777777778888888
Q ss_pred EccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccc
Q 046589 207 DFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQF 286 (729)
Q Consensus 207 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l 286 (729)
+|++|.+++..+..|+.+++|++|+|++|.+++ +++..|..+++|++|++++|.+++.. +..+++|+.++++.|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 888887775555556777777777777777764 34356677777777777777766431 33344444444444433
Q ss_pred cccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCC
Q 046589 287 TGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNK 366 (729)
Q Consensus 287 ~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 366 (729)
++. ....+|+.|++++|.+....+.. .++|+.|+|++|.
T Consensus 205 ~~l--------------------------------------~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~ 243 (597)
T 3oja_B 205 STL--------------------------------------AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNN 243 (597)
T ss_dssp SEE--------------------------------------ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSC
T ss_pred ccc--------------------------------------cCCchhheeeccCCccccccccc---CCCCCEEECCCCC
Confidence 210 01123444555555444322211 1344455555554
Q ss_pred CCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCcccccc
Q 046589 367 LSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSI 446 (729)
Q Consensus 367 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 446 (729)
+++ +..+.. +++|++|+|++|.+++..|..|..+++|+.|+|++|.+++ +
T Consensus 244 l~~--~~~l~~---------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l 293 (597)
T 3oja_B 244 LTD--TAWLLN---------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 293 (597)
T ss_dssp CCC--CGGGGG---------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-E
T ss_pred CCC--Chhhcc---------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-C
Confidence 443 123333 4445555555555555555555555555555555555553 3
Q ss_pred CcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCc
Q 046589 447 PMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491 (729)
Q Consensus 447 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 491 (729)
|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.++
T Consensus 294 ~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 444444555555555555555 34445555555555555555554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=312.91 Aligned_cols=314 Identities=21% Similarity=0.158 Sum_probs=249.3
Q ss_pred CCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCee
Q 046589 151 NLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDL 230 (729)
Q Consensus 151 ~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 230 (729)
.+.+++.|++++|.+....+..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|+.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 36789999999999986666667889999999999999998888899999999999999999998888889999999999
Q ss_pred eccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeE
Q 046589 231 DLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIF 310 (729)
Q Consensus 231 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~ 310 (729)
+|++|.++ .++...|..+++|++|+|++|.+++..|..++.+++|+.|+++.|.+++.
T Consensus 129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------------- 186 (597)
T 3oja_B 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------------------- 186 (597)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---------------------
T ss_pred EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---------------------
Confidence 99999998 67767788999999999999998877777777777777777666655421
Q ss_pred EEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCC
Q 046589 311 TFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNM 390 (729)
Q Consensus 311 ~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 390 (729)
.+..+++|++|++++|.+++ +....+|+.|++++|.
T Consensus 187 ---------------------------------------~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 187 ---------------------------------------DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNS 222 (597)
T ss_dssp ---------------------------------------CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSC
T ss_pred ---------------------------------------ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCc
Confidence 02223344444444444432 1223345555666555
Q ss_pred CCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccC
Q 046589 391 LSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSI 470 (729)
Q Consensus 391 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 470 (729)
+....+.. .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+.+..|..++.+++|+.|+|++|++++ +
T Consensus 223 l~~~~~~~------~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l 293 (597)
T 3oja_B 223 INVVRGPV------NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 293 (597)
T ss_dssp CCEEECSC------CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-E
T ss_pred cccccccc------CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-C
Confidence 54333222 2468899999999986 4788999999999999999999999999999999999999999985 6
Q ss_pred chhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccccccccccccc
Q 046589 471 PEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLG 550 (729)
Q Consensus 471 p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~ 550 (729)
|..+..+++|+.|+|++|.++. +|..+. .+++|+.|++++|.+++. | +.
T Consensus 294 ~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~------------~l~~L~~L~L~~N~l~~~-~-----------------~~ 342 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSHNHLLH-VERNQP------------QFDRLENLYLDHNSIVTL-K-----------------LS 342 (597)
T ss_dssp ECSSSCCTTCCEEECCSSCCCC-CGGGHH------------HHTTCSEEECCSSCCCCC-C-----------------CC
T ss_pred CcccccCCCCcEEECCCCCCCc-cCcccc------------cCCCCCEEECCCCCCCCc-C-----------------hh
Confidence 7777889999999999999983 444333 567899999999999864 2 34
Q ss_pred cccCCceeeccCCcceeecc
Q 046589 551 HLSCSVKLNLSGNKLSVLVP 570 (729)
Q Consensus 551 ~l~~L~~L~Ls~N~l~~~~p 570 (729)
.+++|+.|++++|.+.+...
T Consensus 343 ~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 343 THHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp TTCCCSEEECCSSCEEHHHH
T ss_pred hcCCCCEEEeeCCCCCChhH
Confidence 56789999999999998754
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=286.81 Aligned_cols=308 Identities=22% Similarity=0.321 Sum_probs=251.0
Q ss_pred cccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCC
Q 046589 148 QVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRL 227 (729)
Q Consensus 148 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 227 (729)
.+..+++|+.|++++|.+. .+| .+..+++|++|++++|++++ ++. +.++++|++|++++|.++. +| .+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTC
T ss_pred cchhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcC
Confidence 3457889999999999997 455 48999999999999999985 444 9999999999999999985 44 69999999
Q ss_pred CeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccc
Q 046589 228 QDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAEL 307 (729)
Q Consensus 228 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l 307 (729)
++|++++|.++ .++. +..+++|++|++++|.....++ .+..+++|+.++++.|.+.+.
T Consensus 113 ~~L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~------------------ 170 (347)
T 4fmz_A 113 RELYLNEDNIS-DISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV------------------ 170 (347)
T ss_dssp SEEECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC------------------
T ss_pred CEEECcCCccc-Cchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc------------------
Confidence 99999999998 4443 8899999999999997654443 478888888888777765421
Q ss_pred eeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcC
Q 046589 308 QIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLD 387 (729)
Q Consensus 308 ~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 387 (729)
+. +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|+.|+++
T Consensus 171 ----------------~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 171 ----------------TP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIG 229 (347)
T ss_dssp ----------------GG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred ----------------hh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEcc
Confidence 11 5567889999999999876443 7888999999999999986544 8888999999999
Q ss_pred CCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCC
Q 046589 388 GNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLN 467 (729)
Q Consensus 388 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 467 (729)
+|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|+++
T Consensus 230 ~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 230 NNKITDLSP-----LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp SSCCCCCGG-----GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCccCCCcc-----hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCC
Confidence 999987654 45678899999999999863 5688999999999999999854 45788899999999999999
Q ss_pred ccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCc
Q 046589 468 GSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLS 527 (729)
Q Consensus 468 ~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~ 527 (729)
+..|..+..+++|+.|++++|++++..| +..+++|+.+|+++|.++
T Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~--------------~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--------------LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGHHHHHTCTTCSEEECCSSSCCCCGG--------------GGGCTTCSEESSSCC---
T ss_pred CcChhHhhccccCCEEEccCCccccccC--------------hhhhhccceeehhhhccc
Confidence 8888999999999999999999986433 225677888888888764
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-31 Score=279.66 Aligned_cols=289 Identities=21% Similarity=0.294 Sum_probs=185.4
Q ss_pred CCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEc
Q 046589 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDF 208 (729)
Q Consensus 129 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 208 (729)
.+++++++++|.++.++. .+ .++|++|+|++|.+++..|..|+.+++|++|+|++|++++..|..|.++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 368888998888876543 33 257888899988888777778888888888888888888777888888888888888
Q ss_pred cCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccc--cCCccccCCCcCCeeccccccc
Q 046589 209 SGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG--NIPPEISHLKKLSDHYLGINQF 286 (729)
Q Consensus 209 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~l~l~~n~l 286 (729)
++|.++ .+|..+. ++|++|++++|.++ .++...|..+++|++|++++|.++. ..|..+..+ +|+.++++.|++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 888887 5665554 78888888888887 5665677888888888888887753 445555555 555555555544
Q ss_pred cccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCC
Q 046589 287 TGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNK 366 (729)
Q Consensus 287 ~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 366 (729)
++ +|..+. ++|++|++++|+
T Consensus 185 ~~----------------------------------------------------------l~~~~~--~~L~~L~l~~n~ 204 (332)
T 2ft3_A 185 TG----------------------------------------------------------IPKDLP--ETLNELHLDHNK 204 (332)
T ss_dssp SS----------------------------------------------------------CCSSSC--SSCSCCBCCSSC
T ss_pred Cc----------------------------------------------------------cCcccc--CCCCEEECCCCc
Confidence 32 121111 344444455555
Q ss_pred CCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCcccccc
Q 046589 367 LSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSI 446 (729)
Q Consensus 367 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 446 (729)
+++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|+++ .+|..+..+++|++|++++|++++..
T Consensus 205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL---SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG---GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCcCChhHh---hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence 444444444444455555555554444443333 23345555666666655 45555666666666666666666444
Q ss_pred CcCccC------CCCCCEEEcccccCC--ccCchhhhcCCCCCEEeCCCCc
Q 046589 447 PMRLGD------STSLNILELGNNNLN--GSIPEKIADLAQLQFLDLSYNN 489 (729)
Q Consensus 447 p~~~~~------l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~LdLs~N~ 489 (729)
+..+.. ..+|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 444432 345677777777765 4566667777777777777663
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=277.87 Aligned_cols=291 Identities=20% Similarity=0.239 Sum_probs=216.7
Q ss_pred CcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEee
Q 046589 106 RVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLC 185 (729)
Q Consensus 106 ~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls 185 (729)
+++.++++++.+. .+|..+. ++|++|++++|.+++..+..|.++++|++|+|++|++++..|..|+.+++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4678899998887 5776554 699999999999999988899999999999999999998889999999999999999
Q ss_pred ccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCC-CCChhhhccCCCCCEEEcccccccc
Q 046589 186 SNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSG-SLTVSLFTNLQSLSYLDVSNNLLSG 264 (729)
Q Consensus 186 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~l~~L~~L~Ls~N~l~~ 264 (729)
+|+++ .+|..+. ++|++|++++|.++...+..+..+++|++|++++|.++. .+....+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99998 6676665 899999999999997777789999999999999999862 2344667777 99999999999985
Q ss_pred cCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcce
Q 046589 265 NIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFI 344 (729)
Q Consensus 265 ~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 344 (729)
+|..+. ++|+.++++.|.+++ ..+..+..+++|+.|++++|++.
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~---------------------------------~~~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQA---------------------------------IELEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCC---------------------------------CCTTSSTTCTTCSCCBCCSSCCC
T ss_pred -cCcccc--CCCCEEECCCCcCCc---------------------------------cCHHHhcCCCCCCEEECCCCcCC
Confidence 565443 566666666655542 33345556677777777777777
Q ss_pred ecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccC---CCCCCcEEEcCCCcCc--
Q 046589 345 GRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCT---NLSQLEKLDLSSNMLT-- 419 (729)
Q Consensus 345 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~---~l~~L~~L~Ls~N~l~-- 419 (729)
+..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+++..+..|.... ....|+.|++++|.+.
T Consensus 231 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 231 MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG
T ss_pred cCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccc
Confidence 766666777777777777777776 5666677777777777777777665555543221 1234555555555554
Q ss_pred ccCCcccCCCCCCCEEEccCC
Q 046589 420 GRIPKEIGNLRSIQILKLNSN 440 (729)
Q Consensus 420 ~~~p~~l~~l~~L~~L~L~~N 440 (729)
+..|..|..+++|+.+++++|
T Consensus 310 ~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 310 EVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GSCGGGGTTBCCSTTEEC---
T ss_pred ccCcccccccchhhhhhcccc
Confidence 334444555555555555544
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=272.72 Aligned_cols=289 Identities=21% Similarity=0.267 Sum_probs=172.1
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEcc
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 209 (729)
++++++++++.++..+. .+ .++|++|+|++|++++..+..|+.+++|++|+|++|++++..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK-DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCC-SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCc-cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 56777777777765432 22 2467777777777776656667777777777777777776667777777777777777
Q ss_pred CCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccc--cCCccccCCCcCCeecccccccc
Q 046589 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG--NIPPEISHLKKLSDHYLGINQFT 287 (729)
Q Consensus 210 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~l~l~~n~l~ 287 (729)
+|.++ .+|..+. ++|++|++++|.++ .++...|..+++|++|++++|.+.. ..+..+..+++|+.++++.|.+
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l- 183 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI- 183 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-
Confidence 77776 4555443 56777777777776 4555666777777777777776642 3334444444444444444333
Q ss_pred ccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCC
Q 046589 288 GSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKL 367 (729)
Q Consensus 288 ~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 367 (729)
.. +|..+. ++|++|++++|++
T Consensus 184 --------------------------------------------------------~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 184 --------------------------------------------------------TT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp --------------------------------------------------------CS-CCSSCC--TTCSEEECTTSCC
T ss_pred --------------------------------------------------------cc-CCcccc--ccCCEEECCCCcC
Confidence 21 222111 3455555555555
Q ss_pred CCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccC
Q 046589 368 SGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIP 447 (729)
Q Consensus 368 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 447 (729)
++..|..+..+++|+.|++++|.+++..+..+ ..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSL---ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTG---GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhc---cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccCh
Confidence 54444455555555555555555544443333 23445666666666665 455566666666666666666664444
Q ss_pred cCccC------CCCCCEEEcccccCCc--cCchhhhcCCCCCEEeCCCCc
Q 046589 448 MRLGD------STSLNILELGNNNLNG--SIPEKIADLAQLQFLDLSYNN 489 (729)
Q Consensus 448 ~~~~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~LdLs~N~ 489 (729)
..+.. ...|+.|++++|.+.. ..|..|..+.+++.+++++|+
T Consensus 281 ~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 44432 3567777777777753 456677777788888887774
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=274.29 Aligned_cols=290 Identities=24% Similarity=0.280 Sum_probs=226.4
Q ss_pred CCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeecc
Q 046589 154 RLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLS 233 (729)
Q Consensus 154 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 233 (729)
+|++++++++.++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6889999999987 6777664 678899999999987777788899999999999999987778888888888888888
Q ss_pred CCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEE
Q 046589 234 DNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFS 313 (729)
Q Consensus 234 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~ 313 (729)
+|.++ .++...+ ++|++|++++|.+++..+..+..
T Consensus 109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------- 143 (330)
T 1xku_A 109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNG----------------------------------------- 143 (330)
T ss_dssp SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTT-----------------------------------------
T ss_pred CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcC-----------------------------------------
Confidence 88887 5553322 56777777777665443333444
Q ss_pred ccCCCCCCCcchhcCCCCCCCEEEccCCcce--ecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCC
Q 046589 314 AGMNQLSGPLPSWLGKWNQMESVWLNNNQFI--GRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNML 391 (729)
Q Consensus 314 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 391 (729)
+++|+.|++++|.+. +..+..+..+++|++|++++|+++. +|..+. ++|+.|++++|.+
T Consensus 144 ----------------l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 144 ----------------LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp ----------------CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred ----------------CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence 445555555555553 2455667888999999999999985 555443 8999999999999
Q ss_pred CCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCc
Q 046589 392 SGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIP 471 (729)
Q Consensus 392 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 471 (729)
++..+..+ ..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|.++..+++|++|++++|++++..+
T Consensus 205 ~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 205 TKVDAASL---KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp CEECTGGG---TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CccCHHHh---cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccCh
Confidence 98766665 56778999999999999888889999999999999999998 889999999999999999999998777
Q ss_pred hhhhcC------CCCCEEeCCCCcCccc-ccccccccccccCCCCcccCCCCCeEecCCCc
Q 046589 472 EKIADL------AQLQFLDLSYNNLSRP-ILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNM 525 (729)
Q Consensus 472 ~~l~~l------~~L~~LdLs~N~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~ 525 (729)
..|... ..++.|++++|++... +++ ..+..+..++.+++++|+
T Consensus 281 ~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~-----------~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP-----------STFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG-----------GGGTTCCCGGGEEC----
T ss_pred hhcCCcccccccccccceEeecCcccccccCc-----------cccccccceeEEEecccC
Confidence 777543 7889999999998631 111 223467788999999985
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-32 Score=284.24 Aligned_cols=248 Identities=27% Similarity=0.451 Sum_probs=132.4
Q ss_pred CcEEEEcCCCCCcC--cCCccCCCCCCCcEEECCC-CCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEE
Q 046589 106 RVVYQVLRTQSLKG--PVSPLLFDLSKLRVLNLSQ-NLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETL 182 (729)
Q Consensus 106 ~~~~l~l~~~~l~~--~~~~~l~~L~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L 182 (729)
+++.++++++.+.| .+|+.+.++++|++|++++ |.+.+..|..|+++++|++|+|++|++++.+|..|+.+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555555 4555555555555555552 55555555555555555555555555555555555555555555
Q ss_pred EeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCC-CCCeeeccCCcCCCCCChhhhccCCCCCEEEccccc
Q 046589 183 SLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELT-RLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNL 261 (729)
Q Consensus 183 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 261 (729)
+|++|.+++.+|..|.++++|++|++++|.+++.+|..++.++ +|++|++++|.+++.++ ..+..++ |++|++++|.
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~-~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC-GGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC-hHHhCCc-ccEEECcCCc
Confidence 5555555555555555555555555555555544555555544 45555555554443333 3334443 4444444444
Q ss_pred ccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCC
Q 046589 262 LSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNN 341 (729)
Q Consensus 262 l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n 341 (729)
+++..|..+.. +++|+.|++++|
T Consensus 209 l~~~~~~~~~~---------------------------------------------------------l~~L~~L~L~~N 231 (313)
T 1ogq_A 209 LEGDASVLFGS---------------------------------------------------------DKNTQKIHLAKN 231 (313)
T ss_dssp EEECCGGGCCT---------------------------------------------------------TSCCSEEECCSS
T ss_pred ccCcCCHHHhc---------------------------------------------------------CCCCCEEECCCC
Confidence 44444444444 444555555555
Q ss_pred cceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCc
Q 046589 342 QFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNM 417 (729)
Q Consensus 342 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 417 (729)
++.+.+|. +..+++|++|+|++|++++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|.
T Consensus 232 ~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~----~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 232 SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS----TTGGGSCGGGTCSSS
T ss_pred ceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC----ccccccChHHhcCCC
Confidence 55544433 445556666666666666566666666666666666666666555543 345566667777775
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=280.66 Aligned_cols=252 Identities=29% Similarity=0.455 Sum_probs=185.1
Q ss_pred CCCcEEECCCCCCCC--CCcccccCCCCCCEEeccC-CcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcE
Q 046589 129 SKLRVLNLSQNLLFG--QPSPQVSNLKRLKMLSLGE-NQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKS 205 (729)
Q Consensus 129 ~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 205 (729)
.++++|+|++|.+++ ..|..|+++++|++|+|++ |.+.+.+|..|+.+++|++|+|++|++++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777776 5666777777777777773 6666667777777777777777777776666766777777777
Q ss_pred EEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCC-CCCEEEcccccccccCCccccCCCcCCeeccccc
Q 046589 206 LDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQ-SLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGIN 284 (729)
Q Consensus 206 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n 284 (729)
|+|++|.+++.+|..++.+++|++|++++|.+++.+| ..+..++ +|++|++++|.+++.+|..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N~l~~~~~~~--------------- 193 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRLTGKIPPT--------------- 193 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEEEEECCGG---------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCCeeeccCChH---------------
Confidence 7777776666666666666666666666666554444 3344444 5555555555544333332
Q ss_pred cccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecC
Q 046589 285 QFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSN 364 (729)
Q Consensus 285 ~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 364 (729)
+..+. |+.|++++|.+.+..|..+..+++|++|+|++
T Consensus 194 ------------------------------------------~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 194 ------------------------------------------FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp ------------------------------------------GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred ------------------------------------------HhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence 22333 67788888888888888899999999999999
Q ss_pred CCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCc-cc
Q 046589 365 NKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNF-FN 443 (729)
Q Consensus 365 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~ 443 (729)
|++++.+|. +..+++|++|++++|.+++.+|..+ ..+++|++|+|++|++++.+|.. ..+++|+.|++++|. +.
T Consensus 231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL---TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG---GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred CceeeecCc-ccccCCCCEEECcCCcccCcCChHH---hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 999976665 8889999999999999998888776 45678999999999999999886 889999999999998 44
Q ss_pred c
Q 046589 444 G 444 (729)
Q Consensus 444 ~ 444 (729)
|
T Consensus 306 ~ 306 (313)
T 1ogq_A 306 G 306 (313)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-33 Score=314.27 Aligned_cols=388 Identities=21% Similarity=0.151 Sum_probs=261.6
Q ss_pred CCcEEEEcCCCCCcCcC-CccCCCCCCCcEEECCCCCCCCC----CcccccCCCCCCEEeccCCcCcccCCcccc-CCC-
Q 046589 105 LRVVYQVLRTQSLKGPV-SPLLFDLSKLRVLNLSQNLLFGQ----PSPQVSNLKRLKMLSLGENQLSGSLPSQLG-VLT- 177 (729)
Q Consensus 105 ~~~~~l~l~~~~l~~~~-~~~l~~L~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~L~- 177 (729)
.+++.++++++.++... ...+..+++|++|+|++|.++.. .+..+..+++|++|+|++|.+++..+..+. .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677888887776542 23356677888888888887642 345567778888888888887654444332 344
Q ss_pred ---CCcEEEeeccCCCc----cCCccccCCCCCcEEEccCCCCCCCCccccC-----CCCCCCeeeccCCcCCCCCC---
Q 046589 178 ---WLETLSLCSNSFTG----EMPSELGDMKQLKSLDFSGNGFNGTVPIRLG-----ELTRLQDLDLSDNLLSGSLT--- 242 (729)
Q Consensus 178 ---~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~L~~N~l~~~~~--- 242 (729)
+|++|+|++|+++. .+|..+.++++|++|++++|.+++..+..+. ..++|++|++++|.+++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 58888888888773 4577778888888888888887644333322 24568888888887763221
Q ss_pred hhhhccCCCCCEEEcccccccccCCccccC-----CCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCC
Q 046589 243 VSLFTNLQSLSYLDVSNNLLSGNIPPEISH-----LKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMN 317 (729)
Q Consensus 243 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n 317 (729)
...+..+++|++|++++|.+.+..+..+.. .++|+.++++.|.+++....
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------------------------- 217 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR------------------------- 217 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------------
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------------
Confidence 234556678888888887776543333322 34566666665554421100
Q ss_pred CCCCCcchhcCCCCCCCEEEccCCcceecC-----CCCCcCCCCCcEEEecCCCCCCC----CcccccCCCCCcEEEcCC
Q 046589 318 QLSGPLPSWLGKWNQMESVWLNNNQFIGRI-----PLEVGNCSMLKYIRLSNNKLSGS----IPRELNDSESLVEINLDG 388 (729)
Q Consensus 318 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~ 388 (729)
.++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|+++.. ++..+..+++|++|++++
T Consensus 218 ----~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 218 ----DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp ----HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred ----HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 13556667788899999999876532 22233578999999999998864 566777789999999999
Q ss_pred CCCCCCcccccccc--CCCCCCcEEEcCCCcCccc----CCcccCCCCCCCEEEccCCccccccCcCccC-----CCCCC
Q 046589 389 NMLSGTIEDVFGRC--TNLSQLEKLDLSSNMLTGR----IPKEIGNLRSIQILKLNSNFFNGSIPMRLGD-----STSLN 457 (729)
Q Consensus 389 N~l~~~~~~~~~~~--~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~ 457 (729)
|.+++.....+... ...++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+
T Consensus 294 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 373 (461)
T 1z7x_W 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373 (461)
T ss_dssp CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceE
Confidence 98865433333221 2335899999999999865 4667778899999999999988655444432 67899
Q ss_pred EEEcccccCCc----cCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcc
Q 046589 458 ILELGNNNLNG----SIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSG 528 (729)
Q Consensus 458 ~L~Ls~N~l~~----~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g 528 (729)
.|+|++|++++ .+|..+..+++|++||+++|++++.-...+...+ + ....+++.|++..+.+..
T Consensus 374 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l-----~--~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV-----R--QPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH-----T--STTCCCCEEECTTCCCCH
T ss_pred EEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHh-----c--cCCcchhheeecccccCH
Confidence 99999999986 7888888999999999999998753222211100 0 122356677776666553
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-33 Score=311.64 Aligned_cols=369 Identities=19% Similarity=0.146 Sum_probs=218.0
Q ss_pred CCCcEEECCCCCCCCCCccc-ccCCCCCCEEeccCCcCcc----cCCccccCCCCCcEEEeeccCCCccCCccc-cCCC-
Q 046589 129 SKLRVLNLSQNLLFGQPSPQ-VSNLKRLKMLSLGENQLSG----SLPSQLGVLTWLETLSLCSNSFTGEMPSEL-GDMK- 201 (729)
Q Consensus 129 ~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~----~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l-~~l~- 201 (729)
++|++|||++|+++...... +..+++|++|+|++|.+++ .++..+..+++|++|+|++|.++...+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46778888888776544333 5667788888888888764 345566677778888888777764333332 2333
Q ss_pred ---CCcEEEccCCCCCC----CCccccCCCCCCCeeeccCCcCCCCCCh----hhhccCCCCCEEEcccccccccCCccc
Q 046589 202 ---QLKSLDFSGNGFNG----TVPIRLGELTRLQDLDLSDNLLSGSLTV----SLFTNLQSLSYLDVSNNLLSGNIPPEI 270 (729)
Q Consensus 202 ---~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~p~~l 270 (729)
+|++|+|++|.++. .++..+..+++|++|++++|.++...+. ..+...++|++|++++|.+++..+..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~- 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP- 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH-
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH-
Confidence 57777777777763 3466677777777777777766421111 11122445666666666655422110
Q ss_pred cCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCC
Q 046589 271 SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLE 350 (729)
Q Consensus 271 ~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 350 (729)
++..+..+++|++|++++|.+.+..+..
T Consensus 162 ----------------------------------------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 189 (461)
T 1z7x_W 162 ----------------------------------------------------LASVLRAKPDFKELTVSNNDINEAGVRV 189 (461)
T ss_dssp ----------------------------------------------------HHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred ----------------------------------------------------HHHHHhhCCCCCEEECcCCCcchHHHHH
Confidence 1122223344444555554443221111
Q ss_pred Cc-----CCCCCcEEEecCCCCCCC----CcccccCCCCCcEEEcCCCCCCCCcccccc--ccCCCCCCcEEEcCCCcCc
Q 046589 351 VG-----NCSMLKYIRLSNNKLSGS----IPRELNDSESLVEINLDGNMLSGTIEDVFG--RCTNLSQLEKLDLSSNMLT 419 (729)
Q Consensus 351 l~-----~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~ 419 (729)
+. ..++|++|++++|++++. ++..+..+++|+.|++++|.+++.....+. ....+++|++|++++|.++
T Consensus 190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461)
T 1z7x_W 190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269 (461)
T ss_dssp HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 11 134666666666666543 355555666777777777765432111110 1123566777888877777
Q ss_pred cc----CCcccCCCCCCCEEEccCCccccccCcCcc-----CCCCCCEEEcccccCCcc----CchhhhcCCCCCEEeCC
Q 046589 420 GR----IPKEIGNLRSIQILKLNSNFFNGSIPMRLG-----DSTSLNILELGNNNLNGS----IPEKIADLAQLQFLDLS 486 (729)
Q Consensus 420 ~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdLs 486 (729)
+. ++..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+++. ++..+..+++|+.||++
T Consensus 270 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEcc
Confidence 53 456666677888888888877644332222 235788888888888755 45666777888888888
Q ss_pred CCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccccccccccccccccCCceeeccCCcce
Q 046589 487 YNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLS 566 (729)
Q Consensus 487 ~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~ 566 (729)
+|.+++..+..+...+. ...++|+.|++++|++++.- ...+|..+..+++|++||+++|+++
T Consensus 350 ~n~i~~~~~~~l~~~l~-------~~~~~L~~L~L~~n~i~~~~-----------~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 350 NNRLEDAGVRELCQGLG-------QPGSVLRVLWLADCDVSDSS-----------CSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp SSBCHHHHHHHHHHHHT-------STTCCCCEEECTTSCCCHHH-----------HHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred CCccccccHHHHHHHHc-------CCCCceEEEECCCCCCChhh-----------HHHHHHHHHhCCCccEEECCCCCCC
Confidence 88877543333221110 01457888888888776310 0134556667788888888888887
Q ss_pred ee
Q 046589 567 VL 568 (729)
Q Consensus 567 ~~ 568 (729)
..
T Consensus 412 ~~ 413 (461)
T 1z7x_W 412 DA 413 (461)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=262.99 Aligned_cols=284 Identities=20% Similarity=0.170 Sum_probs=162.7
Q ss_pred CCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEE
Q 046589 128 LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLD 207 (729)
Q Consensus 128 L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 207 (729)
.+...+.+.++|.++.++. .+. ++|++|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~iP~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPS-GLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSSCCT-TCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcccccc-ccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 3444557777777776543 222 3677777777777755555677777777777777777766666677777777777
Q ss_pred ccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCCh-hhhccCCCCCEEEccccc-ccccCCccccCCCcCCeecccccc
Q 046589 208 FSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTV-SLFTNLQSLSYLDVSNNL-LSGNIPPEISHLKKLSDHYLGINQ 285 (729)
Q Consensus 208 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~l~l~~n~ 285 (729)
+++|.+++..+..++++++|++|++++|.++ .++. ..|..+++|++|++++|. +....
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~------------------- 166 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQ------------------- 166 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEEC-------------------
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccC-------------------
Confidence 7777776444444666666666666666665 3443 345556666666665552 22211
Q ss_pred ccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCC
Q 046589 286 FTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNN 365 (729)
Q Consensus 286 l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 365 (729)
+..+..+++|++|++++|++.+..|..+..+++|++|++++|
T Consensus 167 --------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 167 --------------------------------------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp --------------------------------------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred --------------------------------------HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 223344455666666666666666777777777777888777
Q ss_pred CCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccc
Q 046589 366 KLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGS 445 (729)
Q Consensus 366 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 445 (729)
+++...+..+..+++|+.|++++|.+++.....+........++.++++++.+++. .+. .
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~-------------------~l~-~ 268 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE-------------------SLF-Q 268 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH-------------------HHH-H
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc-------------------chh-h
Confidence 77543333344566777777777776655444333333334455555555544431 000 2
Q ss_pred cCcCccCCCCCCEEEcccccCCccCchh-hhcCCCCCEEeCCCCcCccc
Q 046589 446 IPMRLGDSTSLNILELGNNNLNGSIPEK-IADLAQLQFLDLSYNNLSRP 493 (729)
Q Consensus 446 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~LdLs~N~l~~~ 493 (729)
+|.++..+++|+.|+|++|+++ .+|.. +..+++|++|++++|++++.
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 3444445555555555555555 23332 35555555555555555543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=249.16 Aligned_cols=264 Identities=24% Similarity=0.231 Sum_probs=129.0
Q ss_pred CCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCc--cCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeee
Q 046589 154 RLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTG--EMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLD 231 (729)
Q Consensus 154 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 231 (729)
+|++|+|++|+++...+..|..+++|++|+|++|+++. ..|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 44455555555442222234445555555555554441 12334444555555555555554 3444455555555555
Q ss_pred ccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEE
Q 046589 232 LSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFT 311 (729)
Q Consensus 232 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~ 311 (729)
+++|.+++..+...+..+++|++|++++|.+.+..+..+..+++|+.++++.|.+++.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------- 165 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---------------------- 165 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG----------------------
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc----------------------
Confidence 5555554222223455556666666666555544444444444444444444333210
Q ss_pred EEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCC
Q 046589 312 FSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNML 391 (729)
Q Consensus 312 l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 391 (729)
.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|.+
T Consensus 166 ----------------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 211 (306)
T 2z66_A 166 ----------------------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211 (306)
T ss_dssp ----------------------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ----------------------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc
Confidence 2333334444444444444444443344444444444444444444
Q ss_pred CCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCC-CCCEEEccCCccccccCc--CccCCCCCCEEEcccccCCc
Q 046589 392 SGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLR-SIQILKLNSNFFNGSIPM--RLGDSTSLNILELGNNNLNG 468 (729)
Q Consensus 392 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~ 468 (729)
++..+..+ ..+++|++|++++|++++..|..+..++ +|++|++++|.+++..+. ....+...+.+....+.+..
T Consensus 212 ~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C 288 (306)
T 2z66_A 212 FSLDTFPY---KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC 288 (306)
T ss_dssp SBCCSGGG---TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBE
T ss_pred CccChhhc---cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccccc
Confidence 44333332 3345566666666666666666666663 677777777776643221 01122233344555666666
Q ss_pred cCchhhhcC
Q 046589 469 SIPEKIADL 477 (729)
Q Consensus 469 ~~p~~l~~l 477 (729)
..|..+.+.
T Consensus 289 ~~p~~~~g~ 297 (306)
T 2z66_A 289 ATPSDKQGM 297 (306)
T ss_dssp EESGGGTTC
T ss_pred CCchhhCCc
Confidence 667666543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=247.85 Aligned_cols=280 Identities=18% Similarity=0.159 Sum_probs=197.4
Q ss_pred CEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCC--CccccCCCCCCCeeecc
Q 046589 156 KMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGT--VPIRLGELTRLQDLDLS 233 (729)
Q Consensus 156 ~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~ 233 (729)
+.++.+++.++ .+|..+. ++|++|+|++|+++...+..|.++++|++|+|++|.++.. .|..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45666666665 4555432 4666666666666643333456666666666666666521 13334444555555555
Q ss_pred CCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEE
Q 046589 234 DNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFS 313 (729)
Q Consensus 234 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~ 313 (729)
+|.+ . .+|..+..+++|+.++++.|.+++..+
T Consensus 87 ~n~i-------------------------~-~l~~~~~~l~~L~~L~l~~n~l~~~~~---------------------- 118 (306)
T 2z66_A 87 FNGV-------------------------I-TMSSNFLGLEQLEHLDFQHSNLKQMSE---------------------- 118 (306)
T ss_dssp SCSE-------------------------E-EEEEEEETCTTCCEEECTTSEEESSTT----------------------
T ss_pred CCcc-------------------------c-cChhhcCCCCCCCEEECCCCccccccc----------------------
Confidence 5544 4 233444455555555555544432110
Q ss_pred ccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCC-CCcccccCCCCCcEEEcCCCCCC
Q 046589 314 AGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG-SIPRELNDSESLVEINLDGNMLS 392 (729)
Q Consensus 314 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~ 392 (729)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|.++
T Consensus 119 ----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 119 ----------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp ----------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred ----------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 1234556788899999999988888889999999999999999986 57888999999999999999999
Q ss_pred CCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCC-CCCEEEcccccCCccCc
Q 046589 393 GTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDST-SLNILELGNNNLNGSIP 471 (729)
Q Consensus 393 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p 471 (729)
+..+..+ ..+++|++|+|++|++++..+..+..+++|++|++++|++++..|..+..++ +|+.|+|++|.+++..+
T Consensus 189 ~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 189 QLSPTAF---NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp EECTTTT---TTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CcCHHHh---cCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 8777665 4577899999999999988788899999999999999999999999999884 99999999999986543
Q ss_pred --hhhhcCCCCCEEeCCCCcCccccccccc
Q 046589 472 --EKIADLAQLQFLDLSYNNLSRPILSKHS 499 (729)
Q Consensus 472 --~~l~~l~~L~~LdLs~N~l~~~~~~~~~ 499 (729)
.....+...+.+.+..+.+....|....
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 266 HQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp GHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred hHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 1122333445566677777766665543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-27 Score=246.40 Aligned_cols=224 Identities=23% Similarity=0.288 Sum_probs=115.6
Q ss_pred CCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEc
Q 046589 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDF 208 (729)
Q Consensus 129 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 208 (729)
+++++|+|++|.++. +|+.+.++++|++|+|++|.++ .+|..++.+++|++|+|++|+++ .+|..+.++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 344555555555442 2333444555555555555554 45555555555555555555554 44555555555555555
Q ss_pred cCCCCCCCCccccCC---------CCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCee
Q 046589 209 SGNGFNGTVPIRLGE---------LTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDH 279 (729)
Q Consensus 209 s~N~l~~~~p~~l~~---------l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 279 (729)
++|++.+.+|..++. +++|++|++++|.++ .+| ..+..+++|++|++++|.+++ +|..+..+++|+.+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCC-GGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cch-HhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 555444444444332 455555555555544 344 234445555555555555442 33334444444444
Q ss_pred ccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcE
Q 046589 280 YLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKY 359 (729)
Q Consensus 280 ~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 359 (729)
++++|.+. +.+|.+++.+++|+.|++++|.+.+.+|..+..+++|++
T Consensus 235 ~Ls~n~~~---------------------------------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 235 DLRGCTAL---------------------------------RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp ECTTCTTC---------------------------------CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred ECcCCcch---------------------------------hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 43333322 223333444555566666666666666666666666666
Q ss_pred EEecCCCCCCCCcccccCCCCCcEEEcCCCCC
Q 046589 360 IRLSNNKLSGSIPRELNDSESLVEINLDGNML 391 (729)
Q Consensus 360 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 391 (729)
|+|++|++.+.+|..+..+++|+.+++..+.+
T Consensus 282 L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 66666666666666666666666666655443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-27 Score=252.35 Aligned_cols=276 Identities=20% Similarity=0.222 Sum_probs=215.5
Q ss_pred EEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccC
Q 046589 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188 (729)
Q Consensus 109 ~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 188 (729)
..+.+++.++ .+|..+. ++|++|++++|.+++.++..|.++++|++|+|++|++++..|..|+.+++|++|+|++|+
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3677778877 4666554 589999999999999888899999999999999999998888899999999999999999
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCc-cccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCC
Q 046589 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVP-IRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIP 267 (729)
Q Consensus 189 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 267 (729)
+++..+..|.++++|++|++++|+++...+ ..+..+++|++|++++|...+.++...|..+++|++|++++|.+++..|
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 996555569999999999999999985444 4799999999999999953336666788999999999999999998889
Q ss_pred ccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecC
Q 046589 268 PEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRI 347 (729)
Q Consensus 268 ~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 347 (729)
..+..+++|+.++++.|.++.. +.. .+..+++|+.|++++|.+.+..
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~-~~~--------------------------------~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILL-LEI--------------------------------FVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTH-HHH--------------------------------HHHHTTTEEEEEEESCBCTTCC
T ss_pred HHHhccccCCeecCCCCccccc-hhh--------------------------------hhhhcccccEEECCCCcccccc
Confidence 9999999999998888876422 111 1223455666666666665443
Q ss_pred CCCC---cCCCCCcEEEecCCCCCC----CCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcc
Q 046589 348 PLEV---GNCSMLKYIRLSNNKLSG----SIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTG 420 (729)
Q Consensus 348 p~~l---~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 420 (729)
+..+ ...+.++.++|+++.+.+ .+|..+..+++|+.|++++|+++..++..| ..+++|++|+|++|.+.+
T Consensus 239 ~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~---~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF---DRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSSCBCC
T ss_pred ccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH---hcCCCCCEEEeeCCCccC
Confidence 3322 234567788888887765 356677888888888888888886555444 456778888888888876
Q ss_pred cCC
Q 046589 421 RIP 423 (729)
Q Consensus 421 ~~p 423 (729)
..|
T Consensus 316 ~~~ 318 (353)
T 2z80_A 316 SCP 318 (353)
T ss_dssp CHH
T ss_pred cCC
Confidence 443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=252.44 Aligned_cols=246 Identities=25% Similarity=0.268 Sum_probs=139.4
Q ss_pred EEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccC
Q 046589 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188 (729)
Q Consensus 109 ~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 188 (729)
.++.++..++ .+|..+. +++++|+|++|.++++.+..|.++++|++|+|++|++++..|..|.++++|++|+|++|+
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 3455555554 3444332 466677777777666666666666677777777776666666666666667777777766
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCc
Q 046589 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPP 268 (729)
Q Consensus 189 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 268 (729)
+++..+..|.++++|++|+|++|.++...+..|.++++|++|++++|...+.++...|..+++|++|++++|++++. |
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence 66555555666666667776666666555556666666666666664333355555566666666666666665532 2
Q ss_pred cccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCC
Q 046589 269 EISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIP 348 (729)
Q Consensus 269 ~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 348 (729)
.+..++ +|+.|++++|++.+..|
T Consensus 213 ~~~~l~---------------------------------------------------------~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 213 NLTPLV---------------------------------------------------------GLEELEMSGNHFPEIRP 235 (452)
T ss_dssp CCTTCT---------------------------------------------------------TCCEEECTTSCCSEECG
T ss_pred cccccc---------------------------------------------------------cccEEECcCCcCcccCc
Confidence 233333 44444444444444444
Q ss_pred CCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCc
Q 046589 349 LEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLT 419 (729)
Q Consensus 349 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 419 (729)
..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++.++..| ..+++|+.|+|++|.+.
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF---TPLRYLVELHLHHNPWN 303 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS---TTCTTCCEEECCSSCEE
T ss_pred ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh---ccccCCCEEEccCCCcC
Confidence 444444555555555555544444445555555555555555554444333 23344555555555544
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=243.31 Aligned_cols=228 Identities=20% Similarity=0.270 Sum_probs=159.7
Q ss_pred CCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCee
Q 046589 151 NLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDL 230 (729)
Q Consensus 151 ~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 230 (729)
...+++.|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 88999999999999999999998 89999999999999999999998 789899999999999
Q ss_pred eccCCcCCCCCChhh--------hccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCCCccc
Q 046589 231 DLSDNLLSGSLTVSL--------FTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKS 302 (729)
Q Consensus 231 ~L~~N~l~~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~ 302 (729)
++++|++.+.+|... |..+++|++|++++|.++ .+|..++.+++|+.++++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~-------------------- 214 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR-------------------- 214 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEE--------------------
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEcc--------------------
Confidence 999988877777332 223666666666666655 455555555555444444
Q ss_pred ccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCc
Q 046589 303 VLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLV 382 (729)
Q Consensus 303 ~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 382 (729)
+|++.+ +|..+..+++|++|+|++|++.+.+|..+..+++|+
T Consensus 215 -------------------------------------~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 215 -------------------------------------NSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp -------------------------------------SSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred -------------------------------------CCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 444432 223344445555555555555555555555555555
Q ss_pred EEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccc
Q 046589 383 EINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFN 443 (729)
Q Consensus 383 ~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 443 (729)
.|++++|.+.+.+|..+ .++++|++|+|++|++.+.+|..+..+++|+.+++..+.+.
T Consensus 257 ~L~L~~n~~~~~~p~~~---~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDI---HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp EEECTTCTTCCBCCTTG---GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred EEECCCCCchhhcchhh---hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 55555555555555443 33456667777777777777777777777777777766554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-26 Score=250.74 Aligned_cols=246 Identities=23% Similarity=0.280 Sum_probs=143.4
Q ss_pred EEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccC
Q 046589 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188 (729)
Q Consensus 109 ~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 188 (729)
.++.+...++ .+|..+. +++++|+|++|+++++.+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 3444444444 3443332 455666666666665555556666666666666666655555556666666666666666
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCc
Q 046589 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPP 268 (729)
Q Consensus 189 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 268 (729)
++...+..|.++++|++|+|++|.++...+..|..+++|++|++++|...+.++...|..+++|++|++++|.++. +|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-
Confidence 6544444555666666666666665544444555555566665555333334444445555555555555554441 11
Q ss_pred cccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCC
Q 046589 269 EISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIP 348 (729)
Q Consensus 269 ~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 348 (729)
. +..+++|+.|++++|++.+..|
T Consensus 202 ~---------------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~ 224 (440)
T 3zyj_A 202 N---------------------------------------------------------LTPLIKLDELDLSGNHLSAIRP 224 (440)
T ss_dssp C---------------------------------------------------------CTTCSSCCEEECTTSCCCEECT
T ss_pred c---------------------------------------------------------cCCCcccCEEECCCCccCccCh
Confidence 1 2334556666666666666666
Q ss_pred CCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCc
Q 046589 349 LEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLT 419 (729)
Q Consensus 349 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 419 (729)
..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++.++..| ..+++|+.|+|++|.+.
T Consensus 225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF---TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT---SSCTTCCEEECCSSCEE
T ss_pred hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh---ccccCCCEEEcCCCCcc
Confidence 666667777777777777766666666677777777777777766655554 34556777777777665
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-29 Score=290.80 Aligned_cols=409 Identities=16% Similarity=0.085 Sum_probs=275.1
Q ss_pred CccCCCCCCCcEEECCCCCCC---CCCccccc------------CCCCCCEEeccCCcCcccCCccccCC--CCCcEEEe
Q 046589 122 SPLLFDLSKLRVLNLSQNLLF---GQPSPQVS------------NLKRLKMLSLGENQLSGSLPSQLGVL--TWLETLSL 184 (729)
Q Consensus 122 ~~~l~~L~~L~~L~Ls~N~l~---~~~~~~~~------------~l~~L~~L~Ls~N~l~~~~p~~l~~L--~~L~~L~L 184 (729)
+..+..+++|++|+|+++... +..|..++ .+++|++|+|++|.+++..+..++.. .+|++|+|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 344566788999998775421 22222222 68899999999998887767667664 45999999
Q ss_pred eccCC-Cc-cCCccccCCCCCcEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCCCC---hhhhccCCCCCEE
Q 046589 185 CSNSF-TG-EMPSELGDMKQLKSLDFSGNGFNGT----VPIRLGELTRLQDLDLSDNLLSGSLT---VSLFTNLQSLSYL 255 (729)
Q Consensus 185 s~N~l-~~-~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~~l~~L~~L 255 (729)
++|.- +. .++....++++|++|+|++|.+++. ++..+..+++|++|++++|.+++.-. ...+..+++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 98862 21 1222334788999999999987655 33445678899999999998862111 2345678999999
Q ss_pred EcccccccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCE
Q 046589 256 DVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMES 335 (729)
Q Consensus 256 ~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~ 335 (729)
++++|.+.+ +|..+..+++|+.+.++.... ..+ .+..+..+..+++|+.
T Consensus 226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~--~~~----------------------------~~~~~~~l~~~~~L~~ 274 (592)
T 3ogk_B 226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNE--DIG----------------------------MPEKYMNLVFPRKLCR 274 (592)
T ss_dssp ECSSCBGGG-GHHHHHHCTTCCEEEECBCCC--CTT----------------------------CTTSSSCCCCCTTCCE
T ss_pred eccCccHHH-HHHHHhhhhHHHhhccccccc--ccc----------------------------hHHHHHHhhccccccc
Confidence 999998875 667788888888887764211 100 0122334455677777
Q ss_pred EEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCc-ccccCCCCCcEEEcCCCCCCC-CccccccccCCCCCCcEEEc
Q 046589 336 VWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIP-RELNDSESLVEINLDGNMLSG-TIEDVFGRCTNLSQLEKLDL 413 (729)
Q Consensus 336 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l~~L~~L~L 413 (729)
|+++++. ...+|..+..+++|++|+|++|.+++... ..+..+++|+.|+++ +.+.. .++... ..+++|++|++
T Consensus 275 L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~---~~~~~L~~L~L 349 (592)
T 3ogk_B 275 LGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA---QYCKQLKRLRI 349 (592)
T ss_dssp EEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHH---HHCTTCCEEEE
T ss_pred cCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHH---HhCCCCCEEEe
Confidence 8777653 23455666777888888888888654333 335678888888887 33321 111121 34567888888
Q ss_pred C-----------CCcCccc-CCcccCCCCCCCEEEccCCccccccCcCccC-CCCCCEEEcc----cccCCcc-----Cc
Q 046589 414 S-----------SNMLTGR-IPKEIGNLRSIQILKLNSNFFNGSIPMRLGD-STSLNILELG----NNNLNGS-----IP 471 (729)
Q Consensus 414 s-----------~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~-----~p 471 (729)
+ .|.+++. ++.....+++|++|+++.|.+++..+..++. +++|+.|+++ .|.+++. ++
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 8 3566543 2233456888999999888888776666655 7889999996 6778763 44
Q ss_pred hhhhcCCCCCEEeCCCCc--CcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhcccccccccccccc
Q 046589 472 EKIADLAQLQFLDLSYNN--LSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSL 549 (729)
Q Consensus 472 ~~l~~l~~L~~LdLs~N~--l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~ 549 (729)
..+..+++|+.|+++++. +++..+.... ..+++|+.|++++|++++. .++..+
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~-----------~~~~~L~~L~L~~n~l~~~--------------~~~~~~ 484 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-----------QYSPNVRWMLLGYVGESDE--------------GLMEFS 484 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHH-----------HSCTTCCEEEECSCCSSHH--------------HHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHH-----------HhCccceEeeccCCCCCHH--------------HHHHHH
Confidence 456778899999997543 5543333222 1467788999999887642 223344
Q ss_pred ccccCCceeeccCCcceeec-ccccccccccccccCCcccccC
Q 046589 550 GHLSCSVKLNLSGNKLSVLV-PTSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 550 ~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~g 591 (729)
..+++|++|++++|.++... +.....+++|+.|++++|++++
T Consensus 485 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 56788999999999987553 3334568899999999998775
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=252.05 Aligned_cols=114 Identities=29% Similarity=0.338 Sum_probs=57.8
Q ss_pred CcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEee
Q 046589 106 RVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLC 185 (729)
Q Consensus 106 ~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls 185 (729)
.++.++++++.++ .+|..+. ++|++|+|++|.++.+++ .+++|++|+|++|+|+ .+|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 3556666666665 4554443 566666666666554332 3455666666666555 3443 44555555555
Q ss_pred ccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCC
Q 046589 186 SNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLS 238 (729)
Q Consensus 186 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 238 (729)
+|++++ +|. .+++|++|++++|+++. +|.. +++|++|++++|.++
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA 154 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC
Confidence 555552 332 34455555555555542 3321 244444444444443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-25 Score=251.62 Aligned_cols=263 Identities=29% Similarity=0.334 Sum_probs=160.2
Q ss_pred CCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEc
Q 046589 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDF 208 (729)
Q Consensus 129 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 208 (729)
.++++|++++|.++.++ ..+. ++|++|+|++|.|+ .+|. .+++|++|+|++|+++ .+|. .+++|++|+|
T Consensus 40 ~~l~~L~ls~n~L~~lp-~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLP-DCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSCCC-SCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCccC-hhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35899999999998654 4443 78999999999998 5666 5788999999999988 4665 6788999999
Q ss_pred cCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccc
Q 046589 209 SGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTG 288 (729)
Q Consensus 209 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 288 (729)
++|.+++ +|. .+++|++|++++|+++ .+|. .+++|++|++++|.+++ +|.. +.+|+.++++.|.+++
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS 175 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCC-cCCc---cCCCCEEECCCCCCCC
Confidence 9999884 444 5678888888888887 4552 34788888888887764 3322 2334444444443321
Q ss_pred cccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCC
Q 046589 289 SIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLS 368 (729)
Q Consensus 289 ~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 368 (729)
+| ..+++|+.|++++|.+.+ +|.. +++|+.|++++|+++
T Consensus 176 ----------------------------------l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 176 ----------------------------------LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT 214 (622)
T ss_dssp ----------------------------------CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ----------------------------------Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc
Confidence 11 122445555555555443 2221 234555555555544
Q ss_pred CCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCc
Q 046589 369 GSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPM 448 (729)
Q Consensus 369 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 448 (729)
. +|.. +++|++|+|++|++++ +| ..+++|+.|++++|.++ .+|.
T Consensus 215 ~-l~~~------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~ 258 (622)
T 3g06_A 215 S-LPAL------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM 258 (622)
T ss_dssp S-CCCC------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC
T ss_pred c-cCCC------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc
Confidence 2 2211 2345555555555553 33 33455555555555555 3443
Q ss_pred CccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcccccc
Q 046589 449 RLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILS 496 (729)
Q Consensus 449 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~ 496 (729)
.+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|.
T Consensus 259 ---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 259 ---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 3455666666666665 4555566666666666666666554444
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=247.68 Aligned_cols=250 Identities=20% Similarity=0.212 Sum_probs=189.5
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEcc
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 209 (729)
..+.++.+++.++.++. .+ .++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPD-GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCS-CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCC-CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 45677777777766543 22 2467777888887776667777777777777777777776666777777777777777
Q ss_pred CCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeecccccccccc
Q 046589 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGS 289 (729)
Q Consensus 210 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~ 289 (729)
+|+++...+..|..+++|++|+|++|.++ .++...|..+++|++|++++|+..+.+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i----------------------- 176 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYI----------------------- 176 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEE-----------------------
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCccee-----------------------
Confidence 77777555556777777777777777766 455455666666666666653211110
Q ss_pred ccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCC
Q 046589 290 IQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG 369 (729)
Q Consensus 290 ~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 369 (729)
.+..+..+++|+.|++++|++.. +| .+..+++|++|+|++|++++
T Consensus 177 ---------------------------------~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 177 ---------------------------------SEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp ---------------------------------CTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCE
T ss_pred ---------------------------------CcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCc
Confidence 11234556778888888888873 44 47889999999999999999
Q ss_pred CCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCcccc
Q 046589 370 SIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG 444 (729)
Q Consensus 370 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 444 (729)
..|..|..+++|+.|++++|.+++..+..| ..+++|++|+|++|++++..+..+..+++|+.|+|++|.+..
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAF---DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSS---TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhh---cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 889999999999999999999998877666 567789999999999998888889999999999999999863
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=249.09 Aligned_cols=250 Identities=20% Similarity=0.199 Sum_probs=195.6
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEcc
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 209 (729)
..+.++.+++.++.++. .+ .++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~~iP~-~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQ-GI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccCC-CC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 45677888777776543 22 2578888888888887778888888888888888888887777788888888888888
Q ss_pred CCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeecccccccccc
Q 046589 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGS 289 (729)
Q Consensus 210 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~ 289 (729)
+|.++...+..|..+++|++|+|++|.++ .++...|..+++|++|++++|+..+.++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~---------------------- 188 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYIS---------------------- 188 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEEC----------------------
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccC----------------------
Confidence 88887666666777888888888888776 5555667777777777776632211111
Q ss_pred ccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCC
Q 046589 290 IQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG 369 (729)
Q Consensus 290 ~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 369 (729)
+..+..+++|+.|++++|++.+. | .+..+++|++|+|++|++++
T Consensus 189 ----------------------------------~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 189 ----------------------------------EGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp ----------------------------------TTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred ----------------------------------hhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 12244566777888888877743 3 47788999999999999999
Q ss_pred CCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCcccc
Q 046589 370 SIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG 444 (729)
Q Consensus 370 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 444 (729)
..|..|..+++|+.|++++|.+++..+..| ..+++|++|+|++|++++..+..+..+++|+.|+|++|.+..
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAF---DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHh---cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 889999999999999999999998877666 567789999999999998888889999999999999999863
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=236.11 Aligned_cols=255 Identities=22% Similarity=0.215 Sum_probs=149.7
Q ss_pred EEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeecc
Q 046589 108 VYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187 (729)
Q Consensus 108 ~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N 187 (729)
+.++.+++.++ .+|..+ .++|++|++++|.+++.++..|.++++|++|+|++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34555555554 233322 345666666666666655555666666666666666666555566666666666666666
Q ss_pred C-CCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccC
Q 046589 188 S-FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNI 266 (729)
Q Consensus 188 ~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 266 (729)
. +....|..|.++++|++|++++|.+++..|..+..+++|++|++++|.++ .++...|..+++|++|++++|++++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccC
Confidence 5 55444555666666666666666665555555555555666655555554 333344455555555555555443221
Q ss_pred CccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceec
Q 046589 267 PPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGR 346 (729)
Q Consensus 267 p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 346 (729)
+ ..+..+++|+.|++++|.+.+.
T Consensus 170 ~---------------------------------------------------------~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 170 E---------------------------------------------------------RAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp T---------------------------------------------------------TTTTTCTTCCEEECCSSCCCEE
T ss_pred H---------------------------------------------------------HHhcCccccCEEECCCCccccc
Confidence 1 2234456667777777777777
Q ss_pred CCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCccc
Q 046589 347 IPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEI 426 (729)
Q Consensus 347 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 426 (729)
.|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+....+.... ...++.+..+.+.+....|..+
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~----~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL----WAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH----HHHHHHCCSEECCCBEEESGGG
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHH----HHHHHhcccccCccccCCchHh
Confidence 777777888888888888888876666777888888888888877654332110 0112333445555555555554
Q ss_pred C
Q 046589 427 G 427 (729)
Q Consensus 427 ~ 427 (729)
.
T Consensus 269 ~ 269 (285)
T 1ozn_A 269 A 269 (285)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-27 Score=251.10 Aligned_cols=257 Identities=18% Similarity=0.166 Sum_probs=184.6
Q ss_pred ccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCC-CCCChhhhc-------cCCCCCEEEcccccccccCCc
Q 046589 197 LGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLS-GSLTVSLFT-------NLQSLSYLDVSNNLLSGNIPP 268 (729)
Q Consensus 197 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~ 268 (729)
++..++|++|++++|.+ .+|..+... |+.|++++|.++ ..++ ..+. .+++|++|++++|.+++.+|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIP-SRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECB-HHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcC-HHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 45556777777777777 566655543 777777777773 2333 2222 577888888888888877777
Q ss_pred cc--cCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceec
Q 046589 269 EI--SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGR 346 (729)
Q Consensus 269 ~l--~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 346 (729)
.+ ..+++|+.++++.|++++. |..+..+.. ..+++|++|++++|++.+.
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~----------------------------~~~~~L~~L~L~~N~l~~~ 164 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQ----------------------------WLKPGLKVLSIAQAHSLNF 164 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT----------------------------TCCTTCCEEEEESCSCCCC
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHH----------------------------hhcCCCcEEEeeCCCCccc
Confidence 65 7777788777777777654 332221100 0136788888888888887
Q ss_pred CCCCCcCCCCCcEEEecCCCCCCC--Ccccc--cCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccC
Q 046589 347 IPLEVGNCSMLKYIRLSNNKLSGS--IPREL--NDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRI 422 (729)
Q Consensus 347 ~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 422 (729)
.|..+..+++|++|++++|++.+. .|..+ ..+++|++|++++|.+++........+..+++|++|++++|++++..
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 778888889999999999987754 23344 77888899999988887432211122245678888999999988766
Q ss_pred C-cccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcc
Q 046589 423 P-KEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSR 492 (729)
Q Consensus 423 p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 492 (729)
| ..+..+++|++|++++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|++|++++|++++
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred chhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 4 45667888999999999888 7777766 7888999999998865 55 8888888888888888875
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-28 Score=283.64 Aligned_cols=402 Identities=14% Similarity=0.100 Sum_probs=276.3
Q ss_pred hcCCcEEEEcCCCCC---cCcCCccCC------------CCCCCcEEECCCCCCCCCCcccccC-CC-CCCEEeccCCc-
Q 046589 103 LLLRVVYQVLRTQSL---KGPVSPLLF------------DLSKLRVLNLSQNLLFGQPSPQVSN-LK-RLKMLSLGENQ- 164 (729)
Q Consensus 103 ~~~~~~~l~l~~~~l---~~~~~~~l~------------~L~~L~~L~Ls~N~l~~~~~~~~~~-l~-~L~~L~Ls~N~- 164 (729)
...+++.++++++.. .+.+|..++ .+++|++|+|++|.+++..+..+.. ++ +|++|+|++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 456688999977532 133443333 6899999999999887765556655 33 59999999987
Q ss_pred Ccc-cCCccccCCCCCcEEEeeccCCCcc----CCccccCCCCCcEEEccCCCCCC----CCccccCCCCCCCeeeccCC
Q 046589 165 LSG-SLPSQLGVLTWLETLSLCSNSFTGE----MPSELGDMKQLKSLDFSGNGFNG----TVPIRLGELTRLQDLDLSDN 235 (729)
Q Consensus 165 l~~-~~p~~l~~L~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N 235 (729)
++. .++..+..+++|++|+|++|.+++. ++..+..+++|++|++++|.+++ .++..+.++++|++|++++|
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 221 1233345789999999999998755 33455678999999999999973 34445678899999999999
Q ss_pred cCCCCCChhhhccCCCCCEEEccccccc---ccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEE
Q 046589 236 LLSGSLTVSLFTNLQSLSYLDVSNNLLS---GNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTF 312 (729)
Q Consensus 236 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l 312 (729)
.+.+ ++ ..+..+++|++|+++..... ...+..+..+++|+.+.++.+.
T Consensus 231 ~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--------------------------- 281 (592)
T 3ogk_B 231 EILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--------------------------- 281 (592)
T ss_dssp BGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC---------------------------
T ss_pred cHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc---------------------------
Confidence 9874 55 67899999999999864322 2233445555556555443321
Q ss_pred EccCCCCCCCcchhcCCCCCCCEEEccCCcceecCC-CCCcCCCCCcEEEecCCCCCC-CCcccccCCCCCcEEEcCC--
Q 046589 313 SAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIP-LEVGNCSMLKYIRLSNNKLSG-SIPRELNDSESLVEINLDG-- 388 (729)
Q Consensus 313 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~-- 388 (729)
.+.+|..+..+++|++|++++|.+.+... ..+..+++|++|+++ +.+.. .++.....+++|++|++++
T Consensus 282 -------~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~ 353 (592)
T 3ogk_B 282 -------PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGA 353 (592)
T ss_dssp -------TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCC
T ss_pred -------hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCc
Confidence 12455566667788888888888654322 235677888888888 44332 3333445678889999883
Q ss_pred ---------CCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCC-CCCCCEEEcc----CCccccc-----cCcC
Q 046589 389 ---------NMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGN-LRSIQILKLN----SNFFNGS-----IPMR 449 (729)
Q Consensus 389 ---------N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~----~N~l~~~-----~p~~ 449 (729)
|.+++..... ....+++|++|+++.|++++..+..+.. +++|+.|+++ .|.+++. ++..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~ 431 (592)
T 3ogk_B 354 DEQGMEDEEGLVSQRGLIA--LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 (592)
T ss_dssp CSSTTSSTTCCCCHHHHHH--HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred cccccccccCccCHHHHHH--HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence 4544221111 1234678889999888888776666655 8899999996 6777753 3333
Q ss_pred ccCCCCCCEEEcccc--cCCccCchhhhc-CCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcC
Q 046589 450 LGDSTSLNILELGNN--NLNGSIPEKIAD-LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNML 526 (729)
Q Consensus 450 ~~~l~~L~~L~Ls~N--~l~~~~p~~l~~-l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l 526 (729)
+..+++|+.|++++| .+++..+..+.. +++|+.|++++|.+++...... +..+++|+.|++++|.+
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-----------~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF-----------SRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH-----------HTCCTTCCEEEEESCCC
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH-----------HhcCcccCeeeccCCCC
Confidence 566889999999854 477666666654 7889999999999875322111 12567899999999987
Q ss_pred cccCCchhhccccccccccccccccccCCceeeccCCcceee
Q 046589 527 SGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVL 568 (729)
Q Consensus 527 ~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~ 568 (729)
++. .++..+..+++|++|+|++|+++..
T Consensus 501 ~~~--------------~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 501 SER--------------AIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp BHH--------------HHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cHH--------------HHHHHHHhcCccCeeECcCCcCCHH
Confidence 642 1233344678899999999998764
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-26 Score=235.16 Aligned_cols=209 Identities=22% Similarity=0.224 Sum_probs=182.5
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCc-CcccCCccccCCCCCcEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQ-LSGSLPSQLGVLTWLETL 182 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~L~~L~~L 182 (729)
..+++.+++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|. ++...|..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4578999999999998777789999999999999999999989999999999999999997 887678999999999999
Q ss_pred EeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccc
Q 046589 183 SLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL 262 (729)
Q Consensus 183 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 262 (729)
++++|++++..|..|.++++|++|++++|.+++..+..++.+++|++|++++|.++ .++...|..+++|++|++++|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcc
Confidence 99999999888999999999999999999999777778999999999999999998 56667789999999999999999
Q ss_pred cccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCc
Q 046589 263 SGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQ 342 (729)
Q Consensus 263 ~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 342 (729)
++..|..+..+++|+.++++.|.+++ ..+..+..+++|+.|++++|.
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------------------~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSA---------------------------------LPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSC---------------------------------CCHHHHTTCTTCCEEECCSSC
T ss_pred cccCHhHccCcccccEeeCCCCcCCc---------------------------------CCHHHcccCcccCEEeccCCC
Confidence 98888888888888887777766653 233445666777777777777
Q ss_pred ceec
Q 046589 343 FIGR 346 (729)
Q Consensus 343 l~~~ 346 (729)
+...
T Consensus 237 ~~c~ 240 (285)
T 1ozn_A 237 WVCD 240 (285)
T ss_dssp EECS
T ss_pred ccCC
Confidence 7643
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-27 Score=250.18 Aligned_cols=59 Identities=27% Similarity=0.372 Sum_probs=33.6
Q ss_pred CCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCc
Q 046589 405 LSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNG 468 (729)
Q Consensus 405 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 468 (729)
+++|++|+|++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|+|++|++++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 445555556555555 4444444 5566666666666543 44 5566666666666666653
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-27 Score=249.64 Aligned_cols=263 Identities=24% Similarity=0.287 Sum_probs=180.0
Q ss_pred CCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 046589 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSD 234 (729)
Q Consensus 155 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 234 (729)
++.++++.+.+....+..+..+++|++|+|++|++++..|..|.++++|++|+|++|.+++..| +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 5556666666654444445556667777777777766655666777777777777776664333 66666666666666
Q ss_pred CcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEc
Q 046589 235 NLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSA 314 (729)
Q Consensus 235 N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l 314 (729)
|.+++ ++ ..++|++|++++|.+++..+.
T Consensus 90 n~l~~-l~-----~~~~L~~L~l~~n~l~~~~~~---------------------------------------------- 117 (317)
T 3o53_A 90 NYVQE-LL-----VGPSIETLHAANNNISRVSCS---------------------------------------------- 117 (317)
T ss_dssp SEEEE-EE-----ECTTCCEEECCSSCCSEEEEC----------------------------------------------
T ss_pred Ccccc-cc-----CCCCcCEEECCCCccCCcCcc----------------------------------------------
Confidence 65542 11 224555555555544421111
Q ss_pred cCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCccccc-CCCCCcEEEcCCCCCCC
Q 046589 315 GMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELN-DSESLVEINLDGNMLSG 393 (729)
Q Consensus 315 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~ 393 (729)
.+++|+.|++++|++.+..+..+..+++|++|++++|++++..+..+. .+++|++|++++|.+++
T Consensus 118 --------------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 118 --------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp --------------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred --------------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 124566677777777766666777778888888888888776666653 67888888888888775
Q ss_pred CccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCC-ccCch
Q 046589 394 TIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLN-GSIPE 472 (729)
Q Consensus 394 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~ 472 (729)
.... ..+++|++|+|++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.++ +.+|.
T Consensus 184 ~~~~-----~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 184 VKGQ-----VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp EECC-----CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred cccc-----cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 5222 236778889999998885 4555888889999999999888 57778888889999999999988 67788
Q ss_pred hhhcCCCCCEEeCCC-CcCcc
Q 046589 473 KIADLAQLQFLDLSY-NNLSR 492 (729)
Q Consensus 473 ~l~~l~~L~~LdLs~-N~l~~ 492 (729)
++..+++|+.+++++ +.+++
T Consensus 257 ~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 257 FFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp HHHTCHHHHHHHHHHHHHHHS
T ss_pred HHhccccceEEECCCchhccC
Confidence 888888888888884 34444
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-26 Score=242.13 Aligned_cols=105 Identities=22% Similarity=0.371 Sum_probs=87.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+|||+++++++||+|||+|+....... ...+...+|++|||||.+....++.++|||||||++|||+| |+.|+.
T Consensus 170 DLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~ 249 (308)
T 4gt4_A 170 DLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYC 249 (308)
T ss_dssp CCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred CccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999987653222 22335678899999999888899999999999999999999 888876
Q ss_pred CCc--------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PKF--------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~--------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..- .+. +++..||+.+|++||||+||+
T Consensus 250 ~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~ 298 (308)
T 4gt4_A 250 GYSNQDVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIH 298 (308)
T ss_dssp TCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 310 011 799999999999999999874
|
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-26 Score=237.89 Aligned_cols=105 Identities=28% Similarity=0.470 Sum_probs=82.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCC-CcceecccccccccCccccC---CCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCK-SHISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~-~~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+|||+++++++||+|||+|+...... ........||+.|||||.+. ...|+.++|||||||++|||+||+.|
T Consensus 157 DlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~P 236 (307)
T 3omv_A 157 DMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELP 236 (307)
T ss_dssp CCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred ccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCC
Confidence 999999999999999999999998765322 22234568999999999764 34689999999999999999999999
Q ss_pred CCC-C-c-----------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGP-K-F-----------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~-~-~-----------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|.. . . .+ .+++..||+.+|++||||+||+
T Consensus 237 f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~ 292 (307)
T 3omv_A 237 YSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQIL 292 (307)
T ss_dssp TTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHH
T ss_pred CCCCChHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHcCCCHhHCcCHHHHH
Confidence 862 0 0 00 1799999999999999999873
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-26 Score=240.84 Aligned_cols=105 Identities=28% Similarity=0.452 Sum_probs=80.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+|||+++++++||+|||+|+....... ...+...+|+.|||||...+..++.++|||||||++|||+| |+.|+.
T Consensus 183 DLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~ 262 (329)
T 4aoj_A 183 DLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWY 262 (329)
T ss_dssp CCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred cccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999997653322 22335678999999999989999999999999999999999 899976
Q ss_pred C-C-------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 703 P-K-------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~-------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. . +.++ +++.+||+.+|++||||+||+
T Consensus 263 ~~~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~ 311 (329)
T 4aoj_A 263 QLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVH 311 (329)
T ss_dssp SSCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHH
Confidence 2 1 0011 899999999999999999874
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-26 Score=237.77 Aligned_cols=104 Identities=25% Similarity=0.440 Sum_probs=87.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+|||++.++++||+|||+|+......... .....+|++|||||......++.++|||||||++|||+| |+.|+.
T Consensus 153 DlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~ 232 (299)
T 4asz_A 153 DLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWY 232 (299)
T ss_dssp CCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred ccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999998765322222 223568899999999988899999999999999999999 899976
Q ss_pred C-C-------------------cchH--HHHhhcccCCCCCCCCcccc
Q 046589 703 P-K-------------------FEDK--DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 703 ~-~-------------------~~~~--~l~~~c~~~~p~~Rp~~~~v 728 (729)
. . +.++ +++..||+.+|++||||++|
T Consensus 233 ~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i 280 (299)
T 4asz_A 233 QLSNNEVIECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGI 280 (299)
T ss_dssp TSCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHH
Confidence 3 1 0011 89999999999999999986
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-26 Score=244.42 Aligned_cols=268 Identities=21% Similarity=0.202 Sum_probs=160.0
Q ss_pred EEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeecc
Q 046589 108 VYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187 (729)
Q Consensus 108 ~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N 187 (729)
...+++.+.+.......+..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..| +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 334455555443333344455677777777777777766677777777777777777765443 677777777777777
Q ss_pred CCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCC
Q 046589 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIP 267 (729)
Q Consensus 188 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 267 (729)
++++.. ..++|++|++++|.+++..+. .+++|++|++++|.++ .++...+..+++|++|++++|.+++..+
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred cccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccH
Confidence 766322 236677777777776643332 2455666666666665 3333445555666666666665554333
Q ss_pred ccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecC
Q 046589 268 PEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRI 347 (729)
Q Consensus 268 ~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 347 (729)
..+. ..+++|++|++++|.+.+..
T Consensus 162 ~~~~--------------------------------------------------------~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 162 AELA--------------------------------------------------------ASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp GGGG--------------------------------------------------------GGTTTCCEEECTTSCCCEEE
T ss_pred HHHh--------------------------------------------------------hccCcCCEEECCCCcCcccc
Confidence 3221 12344555555555554432
Q ss_pred CCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCc-ccCCccc
Q 046589 348 PLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLT-GRIPKEI 426 (729)
Q Consensus 348 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l 426 (729)
+ ...+++|++|+|++|++++ +|..+..+++|+.|++++|.++.. |..+ ..+++|+.|++++|.+. +.+|.++
T Consensus 186 ~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l-~~~~---~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 186 G--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLI-EKAL---RFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp C--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEE-CTTC---CCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred c--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccch-hhHh---hcCCCCCEEEccCCCccCcCHHHHH
Confidence 1 2235667777777777764 333466667777777777776643 3322 45567778888888877 5677777
Q ss_pred CCCCCCCEEEccC-CccccccCcC
Q 046589 427 GNLRSIQILKLNS-NFFNGSIPMR 449 (729)
Q Consensus 427 ~~l~~L~~L~L~~-N~l~~~~p~~ 449 (729)
..+++|+.|++++ +.+.+..|..
T Consensus 259 ~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred hccccceEEECCCchhccCCchhc
Confidence 7888888888874 3455544433
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-25 Score=234.14 Aligned_cols=104 Identities=20% Similarity=0.309 Sum_probs=89.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+|||++.++++||+|||+|+...... ......+||++|||||.+....|+.++||||+||++|||+||+.||...
T Consensus 195 DlKp~NILl~~~g~vKl~DFGla~~~~~~~-~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~ 273 (346)
T 4fih_A 195 DIKSDSILLTHDGRVKLSDFGFCAQVSKEV-PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE 273 (346)
T ss_dssp CCSGGGEEECTTCCEEECCCTTCEECCSSS-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred cCCHHHEEECCCCCEEEecCcCceecCCCC-CcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 999999999999999999999998765422 2234568999999999988889999999999999999999999998631
Q ss_pred -------------------cc---h--HHHHhhcccCCCCCCCCccccC
Q 046589 705 -------------------FE---D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 -------------------~~---~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|. + .+++.+|+..||++|||++|++
T Consensus 274 ~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l 322 (346)
T 4fih_A 274 PPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELL 322 (346)
T ss_dssp CHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred CHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHh
Confidence 11 1 1799999999999999999874
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=250.05 Aligned_cols=149 Identities=23% Similarity=0.285 Sum_probs=112.1
Q ss_pred CCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCccccc-CCCCCcEEEcCCCCCCCCccccccccCCCCCCc
Q 046589 331 NQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELN-DSESLVEINLDGNMLSGTIEDVFGRCTNLSQLE 409 (729)
Q Consensus 331 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~ 409 (729)
++|+.|++++|.+.+..|..++.+++|++|+|++|.+++.+|..+. .+++|+.|+|++|.+++.++. ..+++|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-----~~l~~L~ 194 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLK 194 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-----CCCTTCC
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-----ccCCCCC
Confidence 4566777777777777677777778888888888888877777765 677888888888887765322 2367788
Q ss_pred EEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCC-ccCchhhhcCCCCCEEeCC
Q 046589 410 KLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLN-GSIPEKIADLAQLQFLDLS 486 (729)
Q Consensus 410 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~LdLs 486 (729)
+|+|++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|.++..++.|+.++++
T Consensus 195 ~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 195 TLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 888888888864 4457788888888888888884 6777888888888888888887 5677777777777777665
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-26 Score=235.82 Aligned_cols=105 Identities=25% Similarity=0.389 Sum_probs=80.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc---ceecccccccccCccccCCC------CCCchhhHHHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH---ISTDVASAISYVPPEYGRAR------KANERDNIYRFGVVLLELV 695 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~---~~~~~~~~~~y~ape~~~~~------~~~~~~Dv~s~G~vl~el~ 695 (729)
|+||+|||+|.++++||+|||+|+........ ......||++|||||++.+. .++.++|||||||++|||+
T Consensus 133 DlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~ 212 (303)
T 3hmm_A 133 DLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIA 212 (303)
T ss_dssp CCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccEEECCCCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHH
Confidence 99999999999999999999999876543222 12245789999999987543 4678999999999999999
Q ss_pred hCCCCCCC---------C---------------------------cch-------HHHHhhcccCCCCCCCCccccC
Q 046589 696 IRKQPTGP---------K---------------------------FED-------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 696 tg~~p~~~---------~---------------------------~~~-------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
||+.|+.. . +.. .+++.+||+.+|++||||+||+
T Consensus 213 tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~ 289 (303)
T 3hmm_A 213 RRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIK 289 (303)
T ss_dssp HTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHH
T ss_pred HCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHH
Confidence 99765420 0 000 0689999999999999999874
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-25 Score=236.63 Aligned_cols=136 Identities=26% Similarity=0.464 Sum_probs=109.9
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
++|...+.||+|+||+||+|+. .+|+.||||.
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 4677778899999999999987 4899999996
Q ss_pred ----------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcce
Q 046589 625 ----------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS 658 (729)
Q Consensus 625 ----------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~ 658 (729)
||||+|||++.++.+||+|||+|+..... ....
T Consensus 104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~-~~~~ 182 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST-VELA 182 (350)
T ss_dssp CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHH-HHHH
T ss_pred CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecCC-cccc
Confidence 99999999999999999999999876421 1122
Q ss_pred ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCc--------------------ch--HHHHhhccc
Q 046589 659 TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKF--------------------ED--KDIVVGCVS 716 (729)
Q Consensus 659 ~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~--------------------~~--~~l~~~c~~ 716 (729)
....||+.|||||.+.+..|+.++||||+||++|||+||+.||...- .+ .+++.+|++
T Consensus 183 ~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L~ 262 (350)
T 4b9d_A 183 RACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFK 262 (350)
T ss_dssp HHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTC
T ss_pred cccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcc
Confidence 34679999999999988899999999999999999999999987311 11 179999999
Q ss_pred CCCCCCCCccccC
Q 046589 717 DNPIAKPGMLRVQ 729 (729)
Q Consensus 717 ~~p~~Rp~~~~v~ 729 (729)
.+|++|||++|++
T Consensus 263 ~dP~~R~s~~e~l 275 (350)
T 4b9d_A 263 RNPRDRPSVNSIL 275 (350)
T ss_dssp SSGGGSCCHHHHH
T ss_pred CChhHCcCHHHHh
Confidence 9999999999863
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-25 Score=227.45 Aligned_cols=136 Identities=26% Similarity=0.424 Sum_probs=117.0
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
++|.....||+|+||+||+|+. .+|+.||||.
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 4677778899999999999987 4889999995
Q ss_pred ---------------------------------------------cccccceEecCCccEEEeecCCccccCCCCC-cce
Q 046589 625 ---------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKS-HIS 658 (729)
Q Consensus 625 ---------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~ 658 (729)
|+||+|||++.++.+||+|||+|+....... ...
T Consensus 112 Ey~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~ 191 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA 191 (311)
T ss_dssp CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCB
T ss_pred ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccc
Confidence 9999999999999999999999998754322 223
Q ss_pred ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC---------------cc----h--HHHHhhcccC
Q 046589 659 TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK---------------FE----D--KDIVVGCVSD 717 (729)
Q Consensus 659 ~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~---------------~~----~--~~l~~~c~~~ 717 (729)
.+.+||+.|||||...+..|+.++||||+||++|||+||+.||... +. + .+++.+|+..
T Consensus 192 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~lL~~ 271 (311)
T 4aw0_A 192 NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVL 271 (311)
T ss_dssp CCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHSCS
T ss_pred cCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCcccCHHHHHHHHHHccC
Confidence 4568999999999988888999999999999999999999998731 11 1 1799999999
Q ss_pred CCCCCCCcccc
Q 046589 718 NPIAKPGMLRV 728 (729)
Q Consensus 718 ~p~~Rp~~~~v 728 (729)
+|++|||++|+
T Consensus 272 dp~~R~t~~e~ 282 (311)
T 4aw0_A 272 DATKRLGCEEM 282 (311)
T ss_dssp SGGGSTTSGGG
T ss_pred CHhHCcChHHH
Confidence 99999999885
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-25 Score=235.64 Aligned_cols=105 Identities=28% Similarity=0.456 Sum_probs=88.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+|||+++++++||+|||+|+......... .....+|+.|||||.+.+..++.++|||||||++|||+| |+.|+.
T Consensus 210 DLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~ 289 (353)
T 4ase_A 210 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 289 (353)
T ss_dssp CCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred ccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCC
Confidence 999999999999999999999999875443332 235678899999999888899999999999999999998 899986
Q ss_pred C-Ccch--------------------H--HHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFED--------------------K--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~~--------------------~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ...+ + +++..||+.+|++||||+||+
T Consensus 290 ~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil 339 (353)
T 4ase_A 290 GVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELV 339 (353)
T ss_dssp TCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHH
Confidence 3 1110 0 799999999999999999874
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=240.70 Aligned_cols=168 Identities=22% Similarity=0.181 Sum_probs=82.2
Q ss_pred EEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCC
Q 046589 310 FTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGN 389 (729)
Q Consensus 310 ~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 389 (729)
..++++.|.+.+..|..+..+++|++|+|++|.+.+..| +..+++|++|+|++|.+++..+ .++|+.|++++|
T Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N 109 (487)
T 3oja_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANN 109 (487)
T ss_dssp CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSS
T ss_pred cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCC
Confidence 445555555555444555555555555555555554443 4455555555555555543211 245555555555
Q ss_pred CCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCcc-CCCCCCEEEcccccCCc
Q 046589 390 MLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLG-DSTSLNILELGNNNLNG 468 (729)
Q Consensus 390 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~ 468 (729)
.+++.++. .+++|+.|+|++|.+++..|..++.+++|++|+|++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus 110 ~l~~~~~~------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 110 NISRVSCS------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCCCEEEC------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCCCCcc------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 55443332 123455555555555554444555555555555555555544444443 44555555555555543
Q ss_pred cCchhhhcCCCCCEEeCCCCcCcc
Q 046589 469 SIPEKIADLAQLQFLDLSYNNLSR 492 (729)
Q Consensus 469 ~~p~~l~~l~~L~~LdLs~N~l~~ 492 (729)
..+ ...+++|+.|+|++|.+++
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCE
T ss_pred ccc--cccCCCCCEEECCCCCCCC
Confidence 321 2234455555555555543
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=224.06 Aligned_cols=101 Identities=26% Similarity=0.461 Sum_probs=84.4
Q ss_pred cccccceEecC-CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNE-DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+|||++. ++.+||+|||+|+.... ....+..||++|||||... ..|+.++|||||||++|||+||+.||..
T Consensus 156 DlKp~NILl~~~~g~vKl~DFGla~~~~~---~~~~~~~GTp~YmAPE~~~-~~y~~~~DiwSlGvilyelltg~~Pf~~ 231 (290)
T 3fpq_A 156 DLKCDNIFITGPTGSVKIGDLGLATLKRA---SFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSE 231 (290)
T ss_dssp CCCGGGEEESSTTSCEEECCTTGGGGCCT---TSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred ccChhheeEECCCCCEEEEeCcCCEeCCC---CccCCcccCccccCHHHcC-CCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence 99999999984 78999999999986432 2234568999999999875 4699999999999999999999999862
Q ss_pred -Ccc---------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 -KFE---------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~~---------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... + .+++.+||+.+|++|||++|++
T Consensus 232 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l 281 (290)
T 3fpq_A 232 CQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL 281 (290)
T ss_dssp CSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CCcHHHHHHHHHcCCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence 100 0 1799999999999999999863
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-25 Score=230.18 Aligned_cols=136 Identities=21% Similarity=0.328 Sum_probs=111.0
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
+.+.....||+|+||+||+|+. .+|+.||||.
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L 137 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSL 137 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBH
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcH
Confidence 3455556799999999999997 4799999996
Q ss_pred -------------------------------------cccccceEecCCc-cEEEeecCCccccCCCCCc----ceeccc
Q 046589 625 -------------------------------------DIKASNILLNEDF-DAKVLDFGLARLISDCKSH----ISTDVA 662 (729)
Q Consensus 625 -------------------------------------dlk~~nill~~~~-~~kl~dfgl~~~~~~~~~~----~~~~~~ 662 (729)
|+||+|||++.++ ++||+|||+|+........ ......
T Consensus 138 ~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~ 217 (336)
T 4g3f_A 138 GQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIP 217 (336)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccc
Confidence 9999999999887 6999999999986532211 112357
Q ss_pred ccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCc----------------------ch--HHHHhhcccCC
Q 046589 663 SAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKF----------------------ED--KDIVVGCVSDN 718 (729)
Q Consensus 663 ~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~----------------------~~--~~l~~~c~~~~ 718 (729)
||+.|||||.+.+..|+.++||||+||++|||+||+.||.... .+ .+++.+|++.+
T Consensus 218 GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~d 297 (336)
T 4g3f_A 218 GTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKE 297 (336)
T ss_dssp CCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSS
T ss_pred cCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHccCC
Confidence 9999999999988899999999999999999999999986310 00 17999999999
Q ss_pred CCCCCCcccc
Q 046589 719 PIAKPGMLRV 728 (729)
Q Consensus 719 p~~Rp~~~~v 728 (729)
|++|||++|+
T Consensus 298 P~~R~sa~el 307 (336)
T 4g3f_A 298 PVHRASAMEL 307 (336)
T ss_dssp GGGSCCHHHH
T ss_pred HhHCcCHHHH
Confidence 9999999886
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=213.89 Aligned_cols=162 Identities=21% Similarity=0.254 Sum_probs=128.4
Q ss_pred cCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCc
Q 046589 112 LRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTG 191 (729)
Q Consensus 112 l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~ 191 (729)
..+.++. .+|..+. ++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+++
T Consensus 14 c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 14 CMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp CTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 3334443 3454333 479999999999998888888899999999999999987777788999999999999999988
Q ss_pred cCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCC-CChhhhccCCCCCEEEcccccccccCCccc
Q 046589 192 EMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGS-LTVSLFTNLQSLSYLDVSNNLLSGNIPPEI 270 (729)
Q Consensus 192 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 270 (729)
..+..|.++++|++|++++|.+.+..+..++.+++|++|++++|.+++. ++ ..|..+++|++|++++|++++..+..+
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCc-hhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 8888899999999999999999877776788889999999999988742 34 667888888888888888876555555
Q ss_pred cCCCcCC
Q 046589 271 SHLKKLS 277 (729)
Q Consensus 271 ~~l~~L~ 277 (729)
..+.+|+
T Consensus 170 ~~l~~L~ 176 (276)
T 2z62_A 170 RVLHQMP 176 (276)
T ss_dssp HHHHTCT
T ss_pred hhhhhcc
Confidence 5444443
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-25 Score=223.07 Aligned_cols=103 Identities=21% Similarity=0.432 Sum_probs=78.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+|+..... ....+..||+.|||||...+..+ +.++||||+||++|||+||+.||..
T Consensus 137 DiKP~NILl~~~~~vkl~DFGla~~~~~~--~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~ 214 (275)
T 3hyh_A 137 DLKPENLLLDEHLNVKIADFGLSNIMTDG--NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD 214 (275)
T ss_dssp CCCTTTEEECTTCCEEECCSSCC-----------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred cCChHHeEECCCCCEEEeecCCCeecCCC--CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCC
Confidence 99999999999999999999999876532 22345689999999998877665 6899999999999999999999873
Q ss_pred Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.-. + .+++.+|++.+|++|||++|++
T Consensus 215 ~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil 261 (275)
T 3hyh_A 215 ESIPVLFKNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIM 261 (275)
T ss_dssp SSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHH
Confidence 111 1 1799999999999999999863
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-24 Score=233.55 Aligned_cols=136 Identities=25% Similarity=0.336 Sum_probs=116.1
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
..|.....||+|+||+||+|+.. +|+.||||.
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence 34566667999999999999974 899999996
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
||||+|||++.++.+||+|||+|+...... ......+|
T Consensus 231 ~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~-~~~~~~~G 309 (423)
T 4fie_A 231 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV-PRRKSLVG 309 (423)
T ss_dssp TTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC-CCBCCCEE
T ss_pred CCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCC-cccccccc
Confidence 999999999999999999999998765422 22345689
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-------------------c---ch--HHHHhhcccCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK-------------------F---ED--KDIVVGCVSDNP 719 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~-------------------~---~~--~~l~~~c~~~~p 719 (729)
|++|||||.+....|+.++||||+||++|||++|+.||... | .+ .+++.+|+..||
T Consensus 310 Tp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP 389 (423)
T 4fie_A 310 TPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDP 389 (423)
T ss_dssp CTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSST
T ss_pred CcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCCh
Confidence 99999999998889999999999999999999999998631 0 01 179999999999
Q ss_pred CCCCCccccC
Q 046589 720 IAKPGMLRVQ 729 (729)
Q Consensus 720 ~~Rp~~~~v~ 729 (729)
++|||++|++
T Consensus 390 ~~R~ta~ell 399 (423)
T 4fie_A 390 AQRATAAELL 399 (423)
T ss_dssp TTSCCHHHHT
T ss_pred hHCcCHHHHh
Confidence 9999999874
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-23 Score=213.04 Aligned_cols=208 Identities=22% Similarity=0.197 Sum_probs=126.3
Q ss_pred CCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEE
Q 046589 356 MLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQIL 435 (729)
Q Consensus 356 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 435 (729)
+|++|++++|++++..+..+..+++|++|++++|.+++..+..| ..+++|++|++++|.+++..+..+.++++|++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTT---TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHc---cCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 45555555555554444455555555555555555554444333 344556666666666666556666666777777
Q ss_pred EccCCccccccCcCccCCCCCCEEEcccccCCcc-CchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCC
Q 046589 436 KLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGS-IPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSH 514 (729)
Q Consensus 436 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 514 (729)
++++|.+.+..+..++.+++|++|++++|++++. +|..+..+++|++|++++|++++..+..+. .+..+.
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------~l~~L~ 176 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR---------VLHQMP 176 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH---------HHHTCT
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh---------hhhhcc
Confidence 7777766655555666667777777777776653 466677777777777777776643222221 011222
Q ss_pred CCC-eEecCCCcCcccCCchhhccccccccccccccccccCCceeeccCCcceeecccccccccccccccCCcccccC
Q 046589 515 NYR-KFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 515 ~l~-~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g 591 (729)
.+. .+++++|.+++.. .......+|+.|++++|++++..+..|..+++|+.|++++|++++
T Consensus 177 ~l~l~L~ls~n~l~~~~----------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFIQ----------------PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TCCEEEECCSSCCCEEC----------------TTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ccceeeecCCCcccccC----------------ccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 222 5777777765322 122223367788888888887777777888888888888888776
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-27 Score=269.41 Aligned_cols=158 Identities=17% Similarity=0.209 Sum_probs=112.6
Q ss_pred cCCCCCCCcEEECCCCCCCC---CCcc------------cccCCCCCCEEeccCCcCcccCCcccc-CCCCCcEEEeecc
Q 046589 124 LLFDLSKLRVLNLSQNLLFG---QPSP------------QVSNLKRLKMLSLGENQLSGSLPSQLG-VLTWLETLSLCSN 187 (729)
Q Consensus 124 ~l~~L~~L~~L~Ls~N~l~~---~~~~------------~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~L~~L~~L~Ls~N 187 (729)
.+..+++|++|++++|.... ..|. ....+++|++|+|++|.+++..+..+. .+++|++|+|++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 35567889999998875321 1111 124578999999999998877777775 6889999999998
Q ss_pred -CCCcc-CCccccCCCCCcEEEccCCCCCCCCccccC----CCCCCCeeeccCCcCCCCCChhh----hccCCCCCEEEc
Q 046589 188 -SFTGE-MPSELGDMKQLKSLDFSGNGFNGTVPIRLG----ELTRLQDLDLSDNLLSGSLTVSL----FTNLQSLSYLDV 257 (729)
Q Consensus 188 -~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~----~l~~L~~L~L~~N~l~~~~~~~~----~~~l~~L~~L~L 257 (729)
.++.. ++..+.++++|++|+|++|.+++..+..+. .+++|++|++++|. +.+.... +..+++|++|++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEec
Confidence 45422 444555789999999999987765554443 66799999999886 2333333 345699999999
Q ss_pred ccc-cccccCCccccCCCcCCeeccccc
Q 046589 258 SNN-LLSGNIPPEISHLKKLSDHYLGIN 284 (729)
Q Consensus 258 s~N-~l~~~~p~~l~~l~~L~~l~l~~n 284 (729)
++| .+. .+|..+..+++|+.+.++.+
T Consensus 219 ~~~~~~~-~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 219 NRAVPLE-KLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CTTSCHH-HHHHHHHHCTTCSEEECSBC
T ss_pred CCCCcHH-HHHHHHhcCCcceEcccccc
Confidence 988 444 36777778888888875543
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-24 Score=222.77 Aligned_cols=100 Identities=26% Similarity=0.441 Sum_probs=83.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+|||++.++++||+|||+|+...... ....+..||+.|||||......++.++||||+||++|||+||+.||...
T Consensus 151 DlKp~NILl~~~g~vKl~DFGla~~~~~~~-~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~ 229 (304)
T 3ubd_A 151 DLKPENILLDEEGHIKLTDFGLSKESIDHE-KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK 229 (304)
T ss_dssp SCCGGGEEECTTSCEEEESSEEEEC------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CCCHHHeEEcCCCCEEecccccceeccCCC-ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc
Confidence 999999999999999999999998754322 2233568999999999988889999999999999999999999998731
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCCCc
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp~~ 725 (729)
-. + .+++.+|++.+|++|||+
T Consensus 230 ~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 230 DRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp SHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred CHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence 11 1 189999999999999995
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=201.89 Aligned_cols=174 Identities=25% Similarity=0.270 Sum_probs=120.7
Q ss_pred cEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeec
Q 046589 107 VVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186 (729)
Q Consensus 107 ~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 186 (729)
.+.++++++.++ .+|..+. +++++|+|++|.+++.++..|.++++|++|+|++|+++...+..|..+++|++|+|++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 456777777777 3555443 5678888888888777777777888888888888888755555567778888888888
Q ss_pred cCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccC
Q 046589 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNI 266 (729)
Q Consensus 187 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 266 (729)
|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.++ .++...|..+++|++|++++|.+++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeC
Confidence 8877666666777778888888888777666666777777777777777776 455456677777777777777666444
Q ss_pred CccccCCCcCCeeccccc
Q 046589 267 PPEISHLKKLSDHYLGIN 284 (729)
Q Consensus 267 p~~l~~l~~L~~l~l~~n 284 (729)
+..+..+++|+.++++.|
T Consensus 174 ~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp TTTTTTCTTCCEEECCSS
T ss_pred hhHhccCCCcCEEECCCC
Confidence 444444444444444333
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.7e-24 Score=219.50 Aligned_cols=102 Identities=26% Similarity=0.440 Sum_probs=77.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-----------ceecccccccccCccccCCCCCCchhhHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-----------ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLE 693 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-----------~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~e 693 (729)
|+||+|||++.++++||+|||+|+........ ..++.+||+.|||||...+..|+.++||||+||++||
T Consensus 143 DlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilye 222 (299)
T 4g31_A 143 DLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFE 222 (299)
T ss_dssp CCCGGGEEECTTCCEEECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHH
T ss_pred cCcHHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999876532211 1123579999999999888899999999999999999
Q ss_pred HHhCCCCCCCCcc--------------h---------HHHHhhcccCCCCCCCCccccC
Q 046589 694 LVIRKQPTGPKFE--------------D---------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 694 l~tg~~p~~~~~~--------------~---------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|++ |+..... + .+++.+|++.+|++|||++|++
T Consensus 223 ll~---Pf~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil 278 (299)
T 4g31_A 223 LLY---PFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINII 278 (299)
T ss_dssp HHS---CCSSHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred Hcc---CCCCccHHHHHHHHHhcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHh
Confidence 996 6552111 0 1689999999999999999863
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-21 Score=199.58 Aligned_cols=131 Identities=27% Similarity=0.309 Sum_probs=85.6
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEcc
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 209 (729)
..+.++++++.++.++. .+. ++|++|+|++|++++..+..|..+++|++|+|++|+++...+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46677777777776432 222 467777777777775555667777777777777777775555556677777777777
Q ss_pred CCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccc
Q 046589 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG 264 (729)
Q Consensus 210 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 264 (729)
+|.++...+..+..+++|++|++++|.++ .++...|..+++|++|++++|.+++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCc
Confidence 77776555555666666777777666665 3444555666666666666665553
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-22 Score=204.73 Aligned_cols=211 Identities=24% Similarity=0.310 Sum_probs=148.1
Q ss_pred CCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCc
Q 046589 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLK 204 (729)
Q Consensus 125 l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 204 (729)
...+++|+.|++++|.++.. +.+..+++|++|+|++|.+++ + +.++.+++|++|+|++|.+++..+..|.++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 44567777777777777653 246677777777777777764 2 3677777777777777777766666677777777
Q ss_pred EEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccc
Q 046589 205 SLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGIN 284 (729)
Q Consensus 205 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n 284 (729)
+|++++|++++..+..++.+++|++|++++|.++ .++...|..+++|++|++++|++++..+..+..+++|+.++++.|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 7777777777666666777777777777777776 455466677777777777777777666666677777777776666
Q ss_pred cccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecC
Q 046589 285 QFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSN 364 (729)
Q Consensus 285 ~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 364 (729)
.+++ ..|..+..+++|+.|++++|.+.+. +++|++|+++.
T Consensus 192 ~l~~---------------------------------~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~ 231 (272)
T 3rfs_A 192 QLKS---------------------------------VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWI 231 (272)
T ss_dssp CCSC---------------------------------CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHH
T ss_pred cCCc---------------------------------cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHH
Confidence 5543 2233455667777888888776543 45677788888
Q ss_pred CCCCCCCcccccCCCC
Q 046589 365 NKLSGSIPRELNDSES 380 (729)
Q Consensus 365 N~l~~~~p~~~~~l~~ 380 (729)
|+++|.+|.+++.+..
T Consensus 232 n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 232 NKHSGVVRNSAGSVAP 247 (272)
T ss_dssp HHTGGGBBCTTSCBCG
T ss_pred HhCCCcccCcccccCC
Confidence 8888888877765543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=201.80 Aligned_cols=209 Identities=23% Similarity=0.207 Sum_probs=151.0
Q ss_pred CCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCC
Q 046589 329 KWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQL 408 (729)
Q Consensus 329 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 408 (729)
.+++|+.|++++|.+.. + ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++.++..+ ..+++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L 111 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVF---DKLTNL 111 (272)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTT---TTCTTC
T ss_pred cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHh---cCCcCC
Confidence 45677888888887653 2 3467778888888888888752 367778888888888888877666554 445677
Q ss_pred cEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCC
Q 046589 409 EKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYN 488 (729)
Q Consensus 409 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N 488 (729)
++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 88888888888766777788888888888888887666666777888888888888888777777778888888888888
Q ss_pred cCcccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccccccccccccccccCCceeeccCCcceee
Q 046589 489 NLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVL 568 (729)
Q Consensus 489 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~ 568 (729)
++++..+..+ ..+++|+.+++++|.+.+. ++.++.|+++.|+++|.
T Consensus 192 ~l~~~~~~~~------------~~l~~L~~L~l~~N~~~~~----------------------~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 192 QLKSVPDGVF------------DRLTSLQYIWLHDNPWDCT----------------------CPGIRYLSEWINKHSGV 237 (272)
T ss_dssp CCSCCCTTTT------------TTCTTCCEEECCSSCBCCC----------------------TTTTHHHHHHHHHTGGG
T ss_pred cCCccCHHHH------------hCCcCCCEEEccCCCcccc----------------------CcHHHHHHHHHHhCCCc
Confidence 8775333222 2566777788888877542 33456677777777777
Q ss_pred cccccccccc
Q 046589 569 VPTSFGNLNG 578 (729)
Q Consensus 569 ~p~~~~~l~~ 578 (729)
+|..++.+..
T Consensus 238 ip~~~~~~~~ 247 (272)
T 3rfs_A 238 VRNSAGSVAP 247 (272)
T ss_dssp BBCTTSCBCG
T ss_pred ccCcccccCC
Confidence 7776665443
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-25 Score=254.38 Aligned_cols=411 Identities=15% Similarity=0.123 Sum_probs=234.2
Q ss_pred cCCcEEEEcCCCCCcCc---CCc------------cCCCCCCCcEEECCCCCCCCCCccccc-CCCCCCEEeccCC-cCc
Q 046589 104 LLRVVYQVLRTQSLKGP---VSP------------LLFDLSKLRVLNLSQNLLFGQPSPQVS-NLKRLKMLSLGEN-QLS 166 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~---~~~------------~l~~L~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~ 166 (729)
..+++.++++++..... .|. ....+++|++|+|++|.+++..+..+. .+++|++|+|++| .++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 45678888887642211 111 123578999999999998876666664 6899999999999 555
Q ss_pred cc-CCccccCCCCCcEEEeeccCCCccCCccc----cCCCCCcEEEccCCC--CCC-CCccccCCCCCCCeeeccCC-cC
Q 046589 167 GS-LPSQLGVLTWLETLSLCSNSFTGEMPSEL----GDMKQLKSLDFSGNG--FNG-TVPIRLGELTRLQDLDLSDN-LL 237 (729)
Q Consensus 167 ~~-~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~Ls~N~--l~~-~~p~~l~~l~~L~~L~L~~N-~l 237 (729)
.. ++..+..+++|++|+|++|.+++..+..+ ..+++|++|++++|. +.. .++..+..+++|++|++++| .+
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 33 44445589999999999999876554444 367799999999997 221 11222345699999999988 33
Q ss_pred CCCCChhhhccCCCCCEEEcccc-------cccccCCccccCCCcCCee-ccccccccccccccccCCCCccccccccee
Q 046589 238 SGSLTVSLFTNLQSLSYLDVSNN-------LLSGNIPPEISHLKKLSDH-YLGINQFTGSIQSELGNCKNFKSVLAELQI 309 (729)
Q Consensus 238 ~~~~~~~~~~~l~~L~~L~Ls~N-------~l~~~~p~~l~~l~~L~~l-~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l 309 (729)
. .++ ..+..+++|++|+++.+ .+.+ ++..+..+++|+.+ .+....
T Consensus 225 ~-~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~------------------------ 277 (594)
T 2p1m_B 225 E-KLA-TLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAV------------------------ 277 (594)
T ss_dssp H-HHH-HHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCC------------------------
T ss_pred H-HHH-HHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccc------------------------
Confidence 3 233 56788999999996544 3332 23345556666554 111110
Q ss_pred EEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecC-CCCCcCCCCCcEEEecCCCCCCC-CcccccCCCCCcEEEcC
Q 046589 310 FTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRI-PLEVGNCSMLKYIRLSNNKLSGS-IPRELNDSESLVEINLD 387 (729)
Q Consensus 310 ~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~ 387 (729)
.+.++..+..+++|++|++++|.+.+.. +..+..+++|++|++++| +... ++.....+++|+.|++.
T Consensus 278 ----------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 278 ----------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp ----------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred ----------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence 0112333334456666666666644321 111335566666666666 3211 11122235666666663
Q ss_pred C---------CCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccC-CCCCCCEEEcc--C----Cccccc-----c
Q 046589 388 G---------NMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIG-NLRSIQILKLN--S----NFFNGS-----I 446 (729)
Q Consensus 388 ~---------N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~--~----N~l~~~-----~ 446 (729)
+ +.+++.....+ ...+++|++|+++.|.+++..+..+. .+++|+.|+++ + |.+++. +
T Consensus 347 ~~~~~g~~~~~~l~~~~l~~l--~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 424 (594)
T 2p1m_B 347 PSEPFVMEPNVALTEQGLVSV--SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424 (594)
T ss_dssp CSCTTCSSCSSCCCHHHHHHH--HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH
T ss_pred cCcccccccCCCCCHHHHHHH--HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHH
Confidence 2 22221111111 12245666676666666654444443 46677777776 3 344311 1
Q ss_pred CcCccCCCCCCEEEcccccCCccCchhhhc-CCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCc
Q 046589 447 PMRLGDSTSLNILELGNNNLNGSIPEKIAD-LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNM 525 (729)
Q Consensus 447 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~ 525 (729)
+..+..+++|+.|+|++ .+++..+..+.. +++|+.|++++|.+++..+.... ..+++|+.|++++|.
T Consensus 425 ~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~-----------~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 425 GAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL-----------SGCDSLRKLEIRDCP 492 (594)
T ss_dssp HHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHH-----------HHCTTCCEEEEESCS
T ss_pred HHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHH-----------hcCCCcCEEECcCCC
Confidence 11244556777777765 555555555544 66777777777776543222211 135567777777777
Q ss_pred CcccCCchhhccccccccccccccccccCCceeeccCCcceeeccccc-ccccccc
Q 046589 526 LSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSF-GNLNGLT 580 (729)
Q Consensus 526 l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~ 580 (729)
+++..+..+.. .+++|+.|++++|+++......+ ..++.|+
T Consensus 493 ~~~~~~~~~~~--------------~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 493 FGDKALLANAS--------------KLETMRSLWMSSCSVSFGACKLLGQKMPKLN 534 (594)
T ss_dssp CCHHHHHHTGG--------------GGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred CcHHHHHHHHH--------------hCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence 65433332221 13456777777777765433333 2344443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=201.01 Aligned_cols=202 Identities=25% Similarity=0.242 Sum_probs=97.4
Q ss_pred CCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcE
Q 046589 126 FDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKS 205 (729)
Q Consensus 126 ~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 205 (729)
.++++++++++++|.++.+++.. .+++++|+|++|.+++..|..|..+++|++|+|++|.+++..+. ..+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 34444555555555444433211 13444555555555444444455555555555555554432221 44445555
Q ss_pred EEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeecccccc
Q 046589 206 LDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQ 285 (729)
Q Consensus 206 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~ 285 (729)
|++++|+++ .+|..+..+++|++|++++|+++ .++...|..+++|++|++++|++++..+..+..+++|+.++++.|+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 555555554 34444445555555555555554 3333444455555555555555554444444445555544444444
Q ss_pred ccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCC
Q 046589 286 FTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNN 365 (729)
Q Consensus 286 l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 365 (729)
+++ ..+..+..+++|+.|++++|++. .+|..+..+++|++|+|++|
T Consensus 160 l~~---------------------------------l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 160 LTE---------------------------------LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CSC---------------------------------CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred CCc---------------------------------cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 331 11122334455566666666655 44555555566677777776
Q ss_pred CCC
Q 046589 366 KLS 368 (729)
Q Consensus 366 ~l~ 368 (729)
.+.
T Consensus 206 p~~ 208 (290)
T 1p9a_G 206 PWL 208 (290)
T ss_dssp CBC
T ss_pred Ccc
Confidence 664
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.9e-24 Score=226.65 Aligned_cols=130 Identities=23% Similarity=0.176 Sum_probs=75.7
Q ss_pred EEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCC----ccccCCC-CCcEEEeeccCCCccCCccccCC-----CC
Q 046589 133 VLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLP----SQLGVLT-WLETLSLCSNSFTGEMPSELGDM-----KQ 202 (729)
Q Consensus 133 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~l~~L~-~L~~L~Ls~N~l~~~~p~~l~~l-----~~ 202 (729)
.++++.|.+++.+|..+...++|++|||++|.+++..+ +.+..++ +|++|+|++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35667777776666555555567777777777765554 5556666 67777777777765555555543 66
Q ss_pred CcEEEccCCCCCCCCccccCC----C-CCCCeeeccCCcCCCCCChhhh----cc-CCCCCEEEccccccc
Q 046589 203 LKSLDFSGNGFNGTVPIRLGE----L-TRLQDLDLSDNLLSGSLTVSLF----TN-LQSLSYLDVSNNLLS 263 (729)
Q Consensus 203 L~~L~Ls~N~l~~~~p~~l~~----l-~~L~~L~L~~N~l~~~~~~~~~----~~-l~~L~~L~Ls~N~l~ 263 (729)
|++|+|++|.+++..+..++. + ++|++|++++|.+++ .+...+ .. .++|++|+|++|.++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 666666666666554443322 2 566666666666542 222222 22 235555555555554
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=199.69 Aligned_cols=156 Identities=25% Similarity=0.238 Sum_probs=106.0
Q ss_pred cCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCC
Q 046589 327 LGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLS 406 (729)
Q Consensus 327 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 406 (729)
+.++++++.+++++|.+. .+|..+. +++++|+|++|++++..+..+..+++|+.|++++|.+++..+. ..++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-----GTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-----SCCT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-----CCCC
Confidence 445667777777777776 3444333 5777888888887776667777777777777777777654332 3466
Q ss_pred CCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCC
Q 046589 407 QLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLS 486 (729)
Q Consensus 407 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs 486 (729)
+|++|++++|+++ .+|..+..+++|++|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+++
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 6777777777776 456666777777777777777775555666677777777777777766555566666667777766
Q ss_pred CCcCc
Q 046589 487 YNNLS 491 (729)
Q Consensus 487 ~N~l~ 491 (729)
+|+++
T Consensus 157 ~N~l~ 161 (290)
T 1p9a_G 157 NNNLT 161 (290)
T ss_dssp TSCCS
T ss_pred CCcCC
Confidence 66665
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-23 Score=223.79 Aligned_cols=263 Identities=22% Similarity=0.233 Sum_probs=200.9
Q ss_pred EEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCC----CCCcCCC-CCcEEEecCCCCCCCCcccccCC-----CCC
Q 046589 312 FSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIP----LEVGNCS-MLKYIRLSNNKLSGSIPRELNDS-----ESL 381 (729)
Q Consensus 312 l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L 381 (729)
+.++.|.+++.+|..+...++|++|++++|.+.+..+ ..+..++ +|++|+|++|++++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4567788888888888888889999999999987665 5677788 89999999999998878777765 899
Q ss_pred cEEEcCCCCCCCCccccccc-cCCC-CCCcEEEcCCCcCcccCCcc----cCC-CCCCCEEEccCCcccccc----CcCc
Q 046589 382 VEINLDGNMLSGTIEDVFGR-CTNL-SQLEKLDLSSNMLTGRIPKE----IGN-LRSIQILKLNSNFFNGSI----PMRL 450 (729)
Q Consensus 382 ~~L~L~~N~l~~~~~~~~~~-~~~l-~~L~~L~Ls~N~l~~~~p~~----l~~-l~~L~~L~L~~N~l~~~~----p~~~ 450 (729)
++|+|++|.+++..+..+.. +..+ ++|++|+|++|.+++..+.. +.. .++|++|++++|.+++.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 99999999998776665443 3444 78999999999998766554 344 369999999999998533 3444
Q ss_pred cCCC-CCCEEEcccccCCccCchhhhc----C-CCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCC
Q 046589 451 GDST-SLNILELGNNNLNGSIPEKIAD----L-AQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYN 524 (729)
Q Consensus 451 ~~l~-~L~~L~Ls~N~l~~~~p~~l~~----l-~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N 524 (729)
...+ +|+.|+|++|++++..+..+.. . ++|+.|||++|.+++.....+...+. ...++|+.||+++|
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~-------~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS-------SIPNHVVSLNLCLN 235 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-------HSCTTCCEEECCSS
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh-------cCCCCceEEECcCC
Confidence 5555 9999999999998877765544 4 69999999999998632222221110 12358999999999
Q ss_pred cCcccCCchhhccccccccccccccccccCCceeeccCCcceeec-------ccccccccccccccCCcccccCC
Q 046589 525 MLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLV-------PTSFGNLNGLTNLDLSYNEFDGN 592 (729)
Q Consensus 525 ~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~~-------p~~~~~l~~L~~L~Ls~N~l~g~ 592 (729)
.+++..+..+ ...+..+++|++|+|++|.+.... +..+..++.|+.||+++|++.+.
T Consensus 236 ~l~~~~~~~l-----------~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 236 CLHGPSLENL-----------KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCCCCHHHH-----------HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCcHHHHHH-----------HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 9986544322 234566788999999999955443 34677889999999999998763
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-22 Score=216.40 Aligned_cols=105 Identities=23% Similarity=0.343 Sum_probs=85.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCC---CcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCK---SHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~---~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+|||++.++.+|++|||+|+...... .....+..||++|+|||...+ ..++.++||||+||++|||+||+.|
T Consensus 183 DlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~p 262 (398)
T 4b99_A 183 DLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQL 262 (398)
T ss_dssp CCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCS
T ss_pred CcCccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCC
Confidence 999999999999999999999998764321 122345689999999998665 4579999999999999999999999
Q ss_pred CCCC-------------------------------------------c-------ch--HHHHhhcccCCCCCCCCcccc
Q 046589 701 TGPK-------------------------------------------F-------ED--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 701 ~~~~-------------------------------------------~-------~~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
|... | .+ .+++.+|+..||++|||++|+
T Consensus 263 F~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~ 342 (398)
T 4b99_A 263 FPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAA 342 (398)
T ss_dssp SCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHH
Confidence 8521 0 00 168999999999999999987
Q ss_pred C
Q 046589 729 Q 729 (729)
Q Consensus 729 ~ 729 (729)
+
T Consensus 343 L 343 (398)
T 4b99_A 343 L 343 (398)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=205.06 Aligned_cols=144 Identities=22% Similarity=0.187 Sum_probs=85.9
Q ss_pred CCCCcEEECCCCCCCCCCcccc--cCCCCCCEEeccCCcCcccCC----ccccCCCCCcEEEeeccCCCccCCccccCCC
Q 046589 128 LSKLRVLNLSQNLLFGQPSPQV--SNLKRLKMLSLGENQLSGSLP----SQLGVLTWLETLSLCSNSFTGEMPSELGDMK 201 (729)
Q Consensus 128 L~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~ 201 (729)
+++|++|++++|.+++..|..+ ..+++|++|+|++|.+++..| ..+..+++|++|+|++|++++..|..|.+++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3456666666666666666655 666666666666666665444 2334566666777777766666666666666
Q ss_pred CCcEEEccCCCCCCC--C--ccccCCCCCCCeeeccCCcCCCCCChh---hhccCCCCCEEEcccccccccCCccccC
Q 046589 202 QLKSLDFSGNGFNGT--V--PIRLGELTRLQDLDLSDNLLSGSLTVS---LFTNLQSLSYLDVSNNLLSGNIPPEISH 272 (729)
Q Consensus 202 ~L~~L~Ls~N~l~~~--~--p~~l~~l~~L~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 272 (729)
+|++|+|++|++.+. + +..++.+++|++|++++|+++ .++.. .+..+++|++|||++|.+++..|..+..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence 777777777665431 1 222356666666777666665 23211 2455666666666666666554544433
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-21 Score=193.03 Aligned_cols=179 Identities=27% Similarity=0.255 Sum_probs=159.0
Q ss_pred cEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeec
Q 046589 107 VVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186 (729)
Q Consensus 107 ~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 186 (729)
...++++++.++ .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 346788888887 4666554 6899999999999999888999999999999999999988888899999999999999
Q ss_pred cCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccC
Q 046589 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNI 266 (729)
Q Consensus 187 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 266 (729)
|++++..+..|..+++|++|+|++|.+++..+..+..+++|++|+|++|.++ .++...|..+++|++|+|++|++++..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 9999888888999999999999999999777777899999999999999998 566577899999999999999999877
Q ss_pred CccccCCCcCCeecccccccccc
Q 046589 267 PPEISHLKKLSDHYLGINQFTGS 289 (729)
Q Consensus 267 p~~l~~l~~L~~l~l~~n~l~~~ 289 (729)
+..+..+++|+.+++++|.+.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 78899999999999999998754
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=204.49 Aligned_cols=207 Identities=21% Similarity=0.204 Sum_probs=153.6
Q ss_pred CCCcEEEecCCCCCCCCcccc--cCCCCCcEEEcCCCCCCCCccccc-cccCCCCCCcEEEcCCCcCcccCCcccCCCCC
Q 046589 355 SMLKYIRLSNNKLSGSIPREL--NDSESLVEINLDGNMLSGTIEDVF-GRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRS 431 (729)
Q Consensus 355 ~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 431 (729)
++|++|++++|++++..|..+ ..+++|++|++++|.+++..+... ..+..+++|++|+|++|++++..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 456677777777666666665 666677777777777665433211 11235778889999999998888888999999
Q ss_pred CCEEEccCCccccc--c--CcCccCCCCCCEEEcccccCCccCch----hhhcCCCCCEEeCCCCcCccccccccccccc
Q 046589 432 IQILKLNSNFFNGS--I--PMRLGDSTSLNILELGNNNLNGSIPE----KIADLAQLQFLDLSYNNLSRPILSKHSSYFH 503 (729)
Q Consensus 432 L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~ 503 (729)
|++|++++|++.+. + +..++.+++|++|+|++|+++ .++. .+..+++|++|||++|++++..|....
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~---- 245 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP---- 245 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS----
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH----
Confidence 99999999987652 2 334578889999999999997 3333 357889999999999999876665543
Q ss_pred ccCCCCcccCCCCCeEecCCCcCcccCCchhhccccccccccccccccccCCceeeccCCcceeeccccccccccccccc
Q 046589 504 EVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLD 583 (729)
Q Consensus 504 ~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 583 (729)
.+.++++|+.|++++|+++ .+| ..+. ++|++|||++|++++. |. +..+++|+.|+
T Consensus 246 -----~~~~~~~L~~L~Ls~N~l~-~lp---------------~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 246 -----RCMWSSALNSLNLSFAGLE-QVP---------------KGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLT 300 (310)
T ss_dssp -----SCCCCTTCCCEECCSSCCC-SCC---------------SCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEE
T ss_pred -----hccCcCcCCEEECCCCCCC-chh---------------hhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEE
Confidence 2224478999999999997 333 3332 6889999999999986 33 67889999999
Q ss_pred CCcccccC
Q 046589 584 LSYNEFDG 591 (729)
Q Consensus 584 Ls~N~l~g 591 (729)
+++|+|+.
T Consensus 301 L~~N~l~~ 308 (310)
T 4glp_A 301 LDGNPFLV 308 (310)
T ss_dssp CSSTTTSC
T ss_pred CcCCCCCC
Confidence 99999864
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9.3e-23 Score=216.64 Aligned_cols=204 Identities=14% Similarity=0.140 Sum_probs=94.8
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCcc-CCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeee
Q 046589 153 KRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGE-MPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLD 231 (729)
Q Consensus 153 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 231 (729)
++++.|++++|.+.+..+. +..+++|++|+|++|.+++. +|..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4455555555555433332 33445555555555554433 444455555555555555555444444555555555555
Q ss_pred ccCC-cCCCCCChhhhccCCCCCEEEcccc-ccccc-CCccccCCC-cCCeecccccc--ccccccccccCCCCcccccc
Q 046589 232 LSDN-LLSGSLTVSLFTNLQSLSYLDVSNN-LLSGN-IPPEISHLK-KLSDHYLGINQ--FTGSIQSELGNCKNFKSVLA 305 (729)
Q Consensus 232 L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~-~L~~l~l~~n~--l~~~~~~~l~~l~~l~~~l~ 305 (729)
+++| .+++......+..+++|++|++++| .+++. ++..+..++ +|+.++++.|. ++.
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~----------------- 211 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK----------------- 211 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-----------------
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH-----------------
Confidence 5555 3332111133445555555555555 44432 233334444 44444444432 110
Q ss_pred cceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCc-ceecCCCCCcCCCCCcEEEecCCC-CCCCCcccccCCCCCcE
Q 046589 306 ELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQ-FIGRIPLEVGNCSMLKYIRLSNNK-LSGSIPRELNDSESLVE 383 (729)
Q Consensus 306 ~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~ 383 (729)
+.+|..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.
T Consensus 212 ---------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 212 ---------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp ---------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred ---------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 0122233334555566666655 444444455555666666666663 21111113445555555
Q ss_pred EEcCCC
Q 046589 384 INLDGN 389 (729)
Q Consensus 384 L~L~~N 389 (729)
|++++|
T Consensus 277 L~l~~~ 282 (336)
T 2ast_B 277 LQVFGI 282 (336)
T ss_dssp EECTTS
T ss_pred EeccCc
Confidence 555555
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.6e-21 Score=192.08 Aligned_cols=130 Identities=22% Similarity=0.268 Sum_probs=72.4
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCCc-CcccCCccccCCCCCcEEEeec-cCCCccCCccccCCCCCcEEE
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQ-LSGSLPSQLGVLTWLETLSLCS-NSFTGEMPSELGDMKQLKSLD 207 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~L~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~ 207 (729)
+|++|++++|+++++++..|.++++|++|++++|+ ++...+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666666655566666666666666664 5544444566666666666665 666655555566666666666
Q ss_pred ccCCCCCCCCccccCCCCCCC---eeeccCC-cCCCCCChhhhccCCCCC-EEEcccccc
Q 046589 208 FSGNGFNGTVPIRLGELTRLQ---DLDLSDN-LLSGSLTVSLFTNLQSLS-YLDVSNNLL 262 (729)
Q Consensus 208 Ls~N~l~~~~p~~l~~l~~L~---~L~L~~N-~l~~~~~~~~~~~l~~L~-~L~Ls~N~l 262 (729)
+++|.+++ +|. +..+++|+ +|++++| .++ .++...|..+++|+ +|++++|.+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCC
Confidence 66666553 443 45555554 5555555 443 33333344444444 444444443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.5e-23 Score=222.36 Aligned_cols=193 Identities=19% Similarity=0.212 Sum_probs=124.0
Q ss_pred cCCCCCCCEEEccCCccee----cCCCCCcCCCCCcEEEecCCCCCCCCcccccC----C---------CCCcEEEcCCC
Q 046589 327 LGKWNQMESVWLNNNQFIG----RIPLEVGNCSMLKYIRLSNNKLSGSIPRELND----S---------ESLVEINLDGN 389 (729)
Q Consensus 327 l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~----l---------~~L~~L~L~~N 389 (729)
+..+++|++|+|++|.+.+ .+|..+..+++|++|+|++|.++...+..+.. + ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 4556677777777777765 34555666777777777777775433333332 2 67777777777
Q ss_pred CCC-CCccccccccCCCCCCcEEEcCCCcCcc-----cCCcccCCCCCCCEEEccCCccc----cccCcCccCCCCCCEE
Q 046589 390 MLS-GTIEDVFGRCTNLSQLEKLDLSSNMLTG-----RIPKEIGNLRSIQILKLNSNFFN----GSIPMRLGDSTSLNIL 459 (729)
Q Consensus 390 ~l~-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~L~L~~N~l~----~~~p~~~~~l~~L~~L 459 (729)
.++ ..++.....+..+++|++|+|++|.++. ..|..+..+++|++|+|++|.++ +.+|..+..+++|+.|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 776 2333222233445677778888777762 23446777777888888888775 4566677777778888
Q ss_pred EcccccCCcc----Cchhhhc--CCCCCEEeCCCCcCcc----cccccccccccccCCCCcccCCCCCeEecCCCcCccc
Q 046589 460 ELGNNNLNGS----IPEKIAD--LAQLQFLDLSYNNLSR----PILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGP 529 (729)
Q Consensus 460 ~Ls~N~l~~~----~p~~l~~--l~~L~~LdLs~N~l~~----~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~ 529 (729)
+|++|.+++. +|..+.. +++|+.|+|++|.+++ .+|.... ..+++|+.|++++|.+++.
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-----------~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-----------EKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-----------HHCTTCCEEECTTSBSCTT
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-----------hcCCCceEEEccCCcCCcc
Confidence 8888877755 4555533 7778888888887765 2333321 1346677777777777654
Q ss_pred C
Q 046589 530 I 530 (729)
Q Consensus 530 ~ 530 (729)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-22 Score=221.75 Aligned_cols=130 Identities=27% Similarity=0.427 Sum_probs=111.5
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|.....||+|+||+||+|+.. +|+.||||.
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 57788889999999999999974 889999995
Q ss_pred ------------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCc
Q 046589 625 ------------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSH 656 (729)
Q Consensus 625 ------------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~ 656 (729)
||||+|||++.++++||+|||+|+......
T Consensus 269 lVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~-- 346 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK-- 346 (689)
T ss_dssp EEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCC--
T ss_pred EEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceeeecCCCC--
Confidence 999999999999999999999998865432
Q ss_pred ceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCCCCC-c---------------------ch--HHHH
Q 046589 657 ISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPTGPK-F---------------------ED--KDIV 711 (729)
Q Consensus 657 ~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~-~---------------------~~--~~l~ 711 (729)
..+.+||+.|||||.+. +..|+.++||||+||++|||+||+.||... . .+ .+++
T Consensus 347 -~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~S~~a~dLI 425 (689)
T 3v5w_A 347 -PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLL 425 (689)
T ss_dssp -CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred -CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCCccCCHHHHHHH
Confidence 23468999999999875 457899999999999999999999999631 0 00 1899
Q ss_pred hhcccCCCCCCCCc
Q 046589 712 VGCVSDNPIAKPGM 725 (729)
Q Consensus 712 ~~c~~~~p~~Rp~~ 725 (729)
..|+..+|.+|++.
T Consensus 426 ~~lL~~dP~~Rl~~ 439 (689)
T 3v5w_A 426 EGLLQRDVNRRLGC 439 (689)
T ss_dssp HHHTCSCGGGCTTC
T ss_pred HHHccCCHhHCCCC
Confidence 99999999999983
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-21 Score=209.57 Aligned_cols=78 Identities=27% Similarity=0.353 Sum_probs=62.6
Q ss_pred cccccceEecCC-ccEEEeecCCccccCCCCC---------------------------cceecccccccccCccccCCC
Q 046589 625 DIKASNILLNED-FDAKVLDFGLARLISDCKS---------------------------HISTDVASAISYVPPEYGRAR 676 (729)
Q Consensus 625 dlk~~nill~~~-~~~kl~dfgl~~~~~~~~~---------------------------~~~~~~~~~~~y~ape~~~~~ 676 (729)
|+||+|||++.+ +.+|++|||+|+....... ...+..+||++|+|||...+.
T Consensus 142 DiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~ 221 (361)
T 4f9c_A 142 DVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKC 221 (361)
T ss_dssp CCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTC
T ss_pred cCCHHHeEEeCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCC
Confidence 999999999876 7999999999986542211 112235799999999987654
Q ss_pred -CCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 677 -KANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 677 -~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
.++.++||||+||++|||+||+.||.
T Consensus 222 ~~y~~~~DiWSlG~il~ell~G~~Pf~ 248 (361)
T 4f9c_A 222 PNQTTAIDMWSAGVIFLSLLSGRYPFY 248 (361)
T ss_dssp SCCCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCccchhhhHHHHHHHHHCCCCCC
Confidence 58999999999999999999999984
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-23 Score=223.04 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=65.8
Q ss_pred CCCCcEEEecCCCCCC-----CCcccccCCCCCcEEEcCCCCCC----CCccccccccCCCCCCcEEEcCCCcCccc---
Q 046589 354 CSMLKYIRLSNNKLSG-----SIPRELNDSESLVEINLDGNMLS----GTIEDVFGRCTNLSQLEKLDLSSNMLTGR--- 421 (729)
Q Consensus 354 l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--- 421 (729)
+++|++|++++|+++. ..|..+..+++|+.|+|++|.++ ..++..+ ..+++|++|+|++|.+++.
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l---~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL---KSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG---GGCTTCCEEECTTCCCCHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH---ccCCCcCEEECCCCCCchhhHH
Confidence 3444444444444431 12224444455555555555543 1222222 3445566677777766654
Q ss_pred -CCccc--CCCCCCCEEEccCCcccc----ccCcCc-cCCCCCCEEEcccccCCccCc
Q 046589 422 -IPKEI--GNLRSIQILKLNSNFFNG----SIPMRL-GDSTSLNILELGNNNLNGSIP 471 (729)
Q Consensus 422 -~p~~l--~~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~p 471 (729)
++..+ +.+++|++|+|++|.+++ .+|..+ ..+++|+.|+|++|++++..+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 44555 337778888888888776 366666 557888888888888876664
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-22 Score=215.19 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=89.1
Q ss_pred CCEEeccCCcCcccCCccccCC--CCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCC-CccccCCCCCCCeee
Q 046589 155 LKMLSLGENQLSGSLPSQLGVL--TWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGT-VPIRLGELTRLQDLD 231 (729)
Q Consensus 155 L~~L~Ls~N~l~~~~p~~l~~L--~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ 231 (729)
++.+++++|.+. |..+..+ .+++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 566677766654 4455666 7899999999998866555 56788999999999888755 777788888888888
Q ss_pred ccCCcCCCCCChhhhccCCCCCEEEcccc-ccccc-CCccccCCCcCCeeccccc
Q 046589 232 LSDNLLSGSLTVSLFTNLQSLSYLDVSNN-LLSGN-IPPEISHLKKLSDHYLGIN 284 (729)
Q Consensus 232 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~l~l~~n 284 (729)
+++|.+++..+ ..+..+++|++|++++| .+++. ++..+..+++|+.++++.|
T Consensus 125 L~~~~l~~~~~-~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 125 LEGLRLSDPIV-NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CTTCBCCHHHH-HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CcCcccCHHHH-HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 88888764333 56677888888888887 45542 3444555555555555555
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=189.97 Aligned_cols=180 Identities=17% Similarity=0.128 Sum_probs=160.5
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCC-CCCCCcccccCCCCCCEEeccC-CcCcccCCccccCCCCCcE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNL-LFGQPSPQVSNLKRLKMLSLGE-NQLSGSLPSQLGVLTWLET 181 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~L~~L~~ 181 (729)
...++.+++++|.+++..+..+.++++|++|++++|. ++.+.+..|.++++|++|++++ |++++..+..|..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3468899999999997666689999999999999997 8888888999999999999999 9999777788999999999
Q ss_pred EEeeccCCCccCCccccCCCCCc---EEEccCC-CCCCCCccccCCCCCCC-eeeccCCcCCCCCChhhhccCCCCCEEE
Q 046589 182 LSLCSNSFTGEMPSELGDMKQLK---SLDFSGN-GFNGTVPIRLGELTRLQ-DLDLSDNLLSGSLTVSLFTNLQSLSYLD 256 (729)
Q Consensus 182 L~Ls~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 256 (729)
|++++|++++ +|. |..+++|+ +|++++| .++...+..|..+++|+ +|++++|.++ .++...|.. ++|++|+
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEE
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEE
Confidence 9999999985 776 88999998 9999999 99877777899999999 9999999998 787677766 8999999
Q ss_pred ccccc-ccccCCccccCC-CcCCeecccccccc
Q 046589 257 VSNNL-LSGNIPPEISHL-KKLSDHYLGINQFT 287 (729)
Q Consensus 257 Ls~N~-l~~~~p~~l~~l-~~L~~l~l~~n~l~ 287 (729)
+++|+ ++...+..+..+ ++|+.++++.|+++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 99995 987777888888 89999988888776
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.1e-20 Score=185.15 Aligned_cols=159 Identities=23% Similarity=0.256 Sum_probs=105.1
Q ss_pred CCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcE
Q 046589 331 NQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEK 410 (729)
Q Consensus 331 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~ 410 (729)
++++.|++++|.+.+..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+++.++..| ..+++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF---DHLTQLDK 111 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT---TTCTTCCE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHh---cccCCCCE
Confidence 456677777777766666666667777777777777766666666666777777777777666555544 34456666
Q ss_pred EEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcC
Q 046589 411 LDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNL 490 (729)
Q Consensus 411 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l 490 (729)
|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 77777776655555566667777777777766655555666666677777777777665555666666667777776666
Q ss_pred cc
Q 046589 491 SR 492 (729)
Q Consensus 491 ~~ 492 (729)
+.
T Consensus 192 ~c 193 (251)
T 3m19_A 192 DC 193 (251)
T ss_dssp CT
T ss_pred eC
Confidence 54
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-20 Score=193.34 Aligned_cols=160 Identities=26% Similarity=0.347 Sum_probs=113.8
Q ss_pred cCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCc
Q 046589 112 LRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTG 191 (729)
Q Consensus 112 l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~ 191 (729)
+..+.+.+.+ ...++++|++|++++|.++... .+..+++|++|+|++|++++ ++. +..+++|++|+|++|++++
T Consensus 26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 26 AGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp TTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC
T ss_pred hCCCCcCcee--cHHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC
Confidence 3344444432 2346778899999988887753 57788889999999998874 444 8888889999998888874
Q ss_pred cCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCcccc
Q 046589 192 EMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEIS 271 (729)
Q Consensus 192 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 271 (729)
+ ..+.++++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++. +. +.
T Consensus 100 -~-~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~ 170 (308)
T 1h6u_A 100 -V-SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP--LAGLTNLQYLSIGNAQVSDL-TP-LA 170 (308)
T ss_dssp -C-GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCC-GG-GT
T ss_pred -c-hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc--ccCCCCccEEEccCCcCCCC-hh-hc
Confidence 3 368888888888888888875 333 7888888888888888873 332 67788888888888877642 22 45
Q ss_pred CCCcCCeeccccccc
Q 046589 272 HLKKLSDHYLGINQF 286 (729)
Q Consensus 272 ~l~~L~~l~l~~n~l 286 (729)
.+++|+.++++.|.+
T Consensus 171 ~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 171 NLSKLTTLKADDNKI 185 (308)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred CCCCCCEEECCCCcc
Confidence 555555555444443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=196.36 Aligned_cols=140 Identities=21% Similarity=0.307 Sum_probs=99.0
Q ss_pred EECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCC
Q 046589 134 LNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGF 213 (729)
Q Consensus 134 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 213 (729)
+.+..+.+++.. .+..+++|++|++++|.++ .+| .+..+++|++|+|++|++++. +. +.++++|++|++++|.+
T Consensus 24 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCC
T ss_pred HHhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcC
Confidence 345555554432 2345778999999999887 455 588888999999999988754 43 88888999999999988
Q ss_pred CCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccc
Q 046589 214 NGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQF 286 (729)
Q Consensus 214 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l 286 (729)
++ ++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|+.++++.|.+
T Consensus 98 ~~-~~-~~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 98 KN-VS-AIAGLQSIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp SC-CG-GGTTCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred CC-ch-hhcCCCCCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcC
Confidence 74 33 68888888888888888874 43 27788888888888887764322 44555555555444443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=178.31 Aligned_cols=180 Identities=24% Similarity=0.268 Sum_probs=147.8
Q ss_pred EEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccC
Q 046589 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188 (729)
Q Consensus 109 ~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 188 (729)
.++.+++.+. .+|..+ .++|++|++++|++++.++..|..+++|++|++++|++++..+..|..+++|++|+|++|+
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3455556655 344433 4589999999999998888888899999999999999986666678899999999999999
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCc
Q 046589 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPP 268 (729)
Q Consensus 189 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 268 (729)
+++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.++ .++...|..+++|++|++++|.+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec----
Confidence 99777777899999999999999999777777899999999999999998 5665778889999999999998764
Q ss_pred cccCCCcCCeeccccccccccccccccCCCC
Q 046589 269 EISHLKKLSDHYLGINQFTGSIQSELGNCKN 299 (729)
Q Consensus 269 ~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~ 299 (729)
.++.|+.+.++.|+++|.+|..++.++.
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3456888888889999888887766543
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-20 Score=197.14 Aligned_cols=136 Identities=24% Similarity=0.410 Sum_probs=114.8
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
+.|...+.||+|+||+||+|.. .+|+.||||.
T Consensus 20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 99 (297)
T 3fxz_A 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL 99 (297)
T ss_dssp GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECC
Confidence 4566677899999999999986 5888999996
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|+||+||+++.++.+|++|||+++....... ......+
T Consensus 100 ~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~g 178 (297)
T 3fxz_A 100 AGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS-KRSTMVG 178 (297)
T ss_dssp TTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC-CBCCCCS
T ss_pred CCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc-ccCCccC
Confidence 9999999999999999999999987654222 2334578
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcc------------------h------HHHHhhcccCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFE------------------D------KDIVVGCVSDNP 719 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~------------------~------~~l~~~c~~~~p 719 (729)
+..|+|||......++.++||||+||++|||+||+.|+...-. + .+++.+|++.+|
T Consensus 179 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp 258 (297)
T 3fxz_A 179 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDV 258 (297)
T ss_dssp CGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHHHHHSCSST
T ss_pred CcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHHHHHccCCh
Confidence 8999999998888899999999999999999999999863110 0 179999999999
Q ss_pred CCCCCccccC
Q 046589 720 IAKPGMLRVQ 729 (729)
Q Consensus 720 ~~Rp~~~~v~ 729 (729)
++|||++|++
T Consensus 259 ~~Rps~~ell 268 (297)
T 3fxz_A 259 EKRGSAKELL 268 (297)
T ss_dssp TTSCCHHHHT
T ss_pred hHCcCHHHHh
Confidence 9999999875
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-21 Score=200.05 Aligned_cols=134 Identities=22% Similarity=0.386 Sum_probs=110.4
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+.|.....+|.|+||+||+|... +|+.||||+
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 46777788999999999999986 889999995
Q ss_pred ---------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCccee
Q 046589 625 ---------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST 659 (729)
Q Consensus 625 ---------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~ 659 (729)
|+||+||+++.++.+||+|||+++..... ....
T Consensus 137 e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~--~~~~ 214 (311)
T 3p1a_A 137 ELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTA--GAGE 214 (311)
T ss_dssp ECCCCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC--------
T ss_pred eccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeecccC--CCCc
Confidence 99999999999999999999998875432 2223
Q ss_pred cccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC--Ccc----------------h--HHHHhhcccCCC
Q 046589 660 DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP--KFE----------------D--KDIVVGCVSDNP 719 (729)
Q Consensus 660 ~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~--~~~----------------~--~~l~~~c~~~~p 719 (729)
...+|.+|+|||...+ .++.++|||||||++|||++|+.|+.. .|. + .+++.+|++.+|
T Consensus 215 ~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP 293 (311)
T 3p1a_A 215 VQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDP 293 (311)
T ss_dssp CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHTTTCCCHHHHTTSCHHHHHHHHHHSCSST
T ss_pred ccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHhccCCCcccccCCCHHHHHHHHHHcCCCh
Confidence 4568899999998764 789999999999999999999877652 111 1 179999999999
Q ss_pred CCCCCccccC
Q 046589 720 IAKPGMLRVQ 729 (729)
Q Consensus 720 ~~Rp~~~~v~ 729 (729)
++|||++|++
T Consensus 294 ~~Rpt~~ell 303 (311)
T 3p1a_A 294 KLRATAEALL 303 (311)
T ss_dssp TTSCCHHHHH
T ss_pred hhCcCHHHHH
Confidence 9999999874
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.2e-21 Score=200.35 Aligned_cols=137 Identities=40% Similarity=0.759 Sum_probs=116.4
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
++|.....+|+|+||.||+|...+|+.||||+
T Consensus 30 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 109 (326)
T 3uim_A 30 DNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYM 109 (326)
T ss_dssp TSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSCCEEEEECC
T ss_pred hccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecCCceEEEEEec
Confidence 56777888999999999999988899999996
Q ss_pred -------------------------------------------------cccccceEecCCccEEEeecCCccccCCCCC
Q 046589 625 -------------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKS 655 (729)
Q Consensus 625 -------------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~ 655 (729)
|+||+||+++.++.+|++|||+++.......
T Consensus 110 ~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 189 (326)
T 3uim_A 110 ANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDT 189 (326)
T ss_dssp TTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSS
T ss_pred cCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccCcccc
Confidence 9999999999999999999999987654333
Q ss_pred cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC--------------------------------
Q 046589 656 HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP-------------------------------- 703 (729)
Q Consensus 656 ~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~-------------------------------- 703 (729)
.......++.+|+|||......++.++||||+||++|||+||+.|+..
T Consensus 190 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (326)
T 3uim_A 190 HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDL 269 (326)
T ss_dssp CEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTC
T ss_pred cccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhh
Confidence 334455689999999988777889999999999999999999999840
Q ss_pred --Ccch------HHHHhhcccCCCCCCCCccccC
Q 046589 704 --KFED------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 --~~~~------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.+.. .+++..|++.+|++|||+++|+
T Consensus 270 ~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell 303 (326)
T 3uim_A 270 QGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVV 303 (326)
T ss_dssp TTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHH
Confidence 0000 0788999999999999999874
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-20 Score=214.15 Aligned_cols=102 Identities=19% Similarity=0.359 Sum_probs=86.7
Q ss_pred cccccceEecCC--ccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNED--FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~--~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.+ +.+||+|||+|+..... .......||+.|||||...+..|+.++||||+||++|||++|+.||.
T Consensus 280 DlKp~Nill~~~~~~~vKl~DFG~a~~~~~~--~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~ 357 (573)
T 3uto_A 280 DLKPENIMFTTKRSNELKLIDFGLTAHLDPK--QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFG 357 (573)
T ss_dssp CCCGGGEEESSSSCCCEEECCCSSCEECCTT--SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred cCChhhccccCCCCCCEEEeeccceeEccCC--CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence 999999999854 89999999999987542 23445678999999999988899999999999999999999999986
Q ss_pred CCcc-----------------------h--HHHHhhcccCCCCCCCCcccc
Q 046589 703 PKFE-----------------------D--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 703 ~~~~-----------------------~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
..-. + .+++.+|+..+|++|||++|+
T Consensus 358 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~ 408 (573)
T 3uto_A 358 GENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQA 408 (573)
T ss_dssp CSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred CcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 2100 0 179999999999999999886
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-20 Score=198.11 Aligned_cols=135 Identities=25% Similarity=0.395 Sum_probs=113.8
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
++|.....+|+|+||.||+|+. .+|+.||||.
T Consensus 15 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e 94 (328)
T 3fe3_A 15 GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIME 94 (328)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred CCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEE
Confidence 4567778899999999999997 5899999995
Q ss_pred --------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceec
Q 046589 625 --------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTD 660 (729)
Q Consensus 625 --------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~ 660 (729)
|+||+||+++.++.+||+|||+++..... .....
T Consensus 95 ~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~--~~~~~ 172 (328)
T 3fe3_A 95 YASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG--GKLDA 172 (328)
T ss_dssp CCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSS--CGGGT
T ss_pred CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCC--Ccccc
Confidence 99999999999999999999999876532 22345
Q ss_pred ccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCCCCcc-------------------h--HHHHhhcccCC
Q 046589 661 VASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTGPKFE-------------------D--KDIVVGCVSDN 718 (729)
Q Consensus 661 ~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~~~~~-------------------~--~~l~~~c~~~~ 718 (729)
..++.+|+|||...+..+ +.++||||+||++|||+||+.|+...-. . .+++.+|+..+
T Consensus 173 ~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~d 252 (328)
T 3fe3_A 173 FCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLVLN 252 (328)
T ss_dssp TSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHCCSS
T ss_pred ccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHCCCC
Confidence 678999999998876665 4789999999999999999999874211 1 17999999999
Q ss_pred CCCCCCccccC
Q 046589 719 PIAKPGMLRVQ 729 (729)
Q Consensus 719 p~~Rp~~~~v~ 729 (729)
|++|||++|++
T Consensus 253 P~~R~t~~eil 263 (328)
T 3fe3_A 253 PIKRGTLEQIM 263 (328)
T ss_dssp TTTSCCHHHHT
T ss_pred hhHCcCHHHHh
Confidence 99999999874
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-20 Score=197.50 Aligned_cols=138 Identities=36% Similarity=0.634 Sum_probs=114.9
Q ss_pred CcccccccCCCCCCcceEEEeecCCCCceeeec-----------------------------------------------
Q 046589 592 NNKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 592 ~~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~----------------------------------------------- 624 (729)
+++|.....+|+|+||.||+|...+|+.||||+
T Consensus 38 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 117 (321)
T 2qkw_B 38 TNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYM 117 (321)
T ss_dssp CCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEEECC
T ss_pred HhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEEcC
Confidence 467788889999999999999998899999996
Q ss_pred ----------------------------------------------cccccceEecCCccEEEeecCCccccCCCC-Ccc
Q 046589 625 ----------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCK-SHI 657 (729)
Q Consensus 625 ----------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~-~~~ 657 (729)
|+||+||+++.++.+|++|||+++...... ...
T Consensus 118 ~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~ 197 (321)
T 2qkw_B 118 ENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHL 197 (321)
T ss_dssp TTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCC
T ss_pred CCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeeccccccccccccccc
Confidence 999999999999999999999998654221 112
Q ss_pred eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC----------cc---------------------
Q 046589 658 STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK----------FE--------------------- 706 (729)
Q Consensus 658 ~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~----------~~--------------------- 706 (729)
.....++.+|+|||......++.++|||||||++|||+||+.|+... |.
T Consensus 198 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (321)
T 2qkw_B 198 STVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKI 277 (321)
T ss_dssp BCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCS
T ss_pred ccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhcccc
Confidence 23446788999999887778899999999999999999999987521 00
Q ss_pred -h------HHHHhhcccCCCCCCCCccccC
Q 046589 707 -D------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 707 -~------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .+++.+|++.+|++|||+++|+
T Consensus 278 ~~~~~~~l~~li~~~l~~dP~~Rps~~ell 307 (321)
T 2qkw_B 278 RPESLRKFGDTAVKCLALSSEDRPSMGDVL 307 (321)
T ss_dssp CHHHHHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCcccCcCHHHHH
Confidence 0 0688899999999999999874
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-19 Score=189.27 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=77.6
Q ss_pred CEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCc-cccCCCCCCCe-eecc
Q 046589 156 KMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVP-IRLGELTRLQD-LDLS 233 (729)
Q Consensus 156 ~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~L~ 233 (729)
+.++.++++++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57788888887 677766 3578888888888886555678888888888888888765554 35677777664 4555
Q ss_pred CCcCCCCCChhhhccCCCCCEEEcccccccccCC
Q 046589 234 DNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIP 267 (729)
Q Consensus 234 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 267 (729)
.|+++ .++...|..+++|++|++++|++....+
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCc
Confidence 67776 4555667777777777777777764433
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-20 Score=196.14 Aligned_cols=104 Identities=21% Similarity=0.322 Sum_probs=87.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++....... ......++.+|+|||......++.++|||||||++|||+||+.|+...
T Consensus 166 Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~ 244 (321)
T 2c30_A 166 DIKSDSILLTLDGRVKLSDFGFCAQISKDVP-KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSD 244 (321)
T ss_dssp CCSGGGEEECTTCCEEECCCTTCEECCSSSC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred CCCHHHEEECCCCcEEEeeeeeeeecccCcc-ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999999999987653221 223457889999999988888999999999999999999999997521
Q ss_pred ----------------cc------h--HHHHhhcccCCCCCCCCccccC
Q 046589 705 ----------------FE------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ----------------~~------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+. + .+++.+|++.+|++|||+++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell 293 (321)
T 2c30_A 245 SPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELL 293 (321)
T ss_dssp CHHHHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred CHHHHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 00 0 1799999999999999999874
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=175.82 Aligned_cols=177 Identities=24% Similarity=0.248 Sum_probs=133.1
Q ss_pred CEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEc
Q 046589 334 ESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDL 413 (729)
Q Consensus 334 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L 413 (729)
+.++.+++.+.. +|..+ .++|++|++++|++++..+..+..+++|++|++++|++++.++..| ..+++|++|+|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L 83 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF---NKLTSLTYLNL 83 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT---TTCTTCCEEEC
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhc---CCCCCcCEEEC
Confidence 345566665542 33322 3578888888888887666667788888888888888876665554 45667888888
Q ss_pred CCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCccc
Q 046589 414 SSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRP 493 (729)
Q Consensus 414 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ 493 (729)
++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 8888887666678888889999998888886666667888889999999998887777678888889999999987764
Q ss_pred ccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhh
Q 046589 494 ILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELG 535 (729)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~ 535 (729)
.+++++.++++.|+++|.+|..++
T Consensus 163 ------------------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 163 ------------------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp ------------------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred ------------------CCCCHHHHHHHHHhCCceeeccCc
Confidence 345677778888888877766554
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-19 Score=188.25 Aligned_cols=124 Identities=16% Similarity=0.118 Sum_probs=92.7
Q ss_pred cEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCC-ccccCCCCCcE-EEcc
Q 046589 132 RVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMP-SELGDMKQLKS-LDFS 209 (729)
Q Consensus 132 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~-L~Ls 209 (729)
++++-++++++.++. .+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| .+|.++++|++ +.++
T Consensus 12 ~~v~C~~~~Lt~iP~-~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPS-DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCT-TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCc-Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 567788888887643 33 2578899999999885555678889999999999998866555 46788888765 6667
Q ss_pred CCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccc
Q 046589 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSN 259 (729)
Q Consensus 210 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 259 (729)
+|+++...|..|..+++|++|++++|+++ .++...+....++..|++.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEES
T ss_pred CCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhcc
Confidence 78888777888888999999999999887 44445555556666777654
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-20 Score=196.44 Aligned_cols=103 Identities=19% Similarity=0.484 Sum_probs=85.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..... .......++.+|+|||...+..+ +.++||||+||++|||+||+.|+..
T Consensus 133 Dlkp~NIll~~~~~~kl~DFG~s~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~ 210 (336)
T 3h4j_B 133 DLKPENLLLDDNLNVKIADFGLSNIMTDG--NFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDD 210 (336)
T ss_dssp CCSTTTEEECTTCCEEECCSSCTBTTTTS--BTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBC
T ss_pred CCchhhEEEcCCCCEEEEEeccceeccCC--cccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999876532 22234578899999998876655 7899999999999999999999863
Q ss_pred Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... + .+++..|+..+|.+|||++|++
T Consensus 211 ~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil 257 (336)
T 3h4j_B 211 EFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIR 257 (336)
T ss_dssp SSSTTCBCCCCSSCCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHT
T ss_pred ccHHHHHHHHHcCCCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 110 1 1899999999999999999874
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-20 Score=193.52 Aligned_cols=136 Identities=24% Similarity=0.394 Sum_probs=112.6
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
+.|.....+|+|+||+||+|+..+|+.||||.
T Consensus 21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 100 (311)
T 3niz_A 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEF 100 (311)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEEC
T ss_pred hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcC
Confidence 56777788999999999999998899999996
Q ss_pred -------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecc
Q 046589 625 -------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDV 661 (729)
Q Consensus 625 -------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~ 661 (729)
|+||+||+++.++.+|++|||+++...... ......
T Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~ 179 (311)
T 3niz_A 101 MEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPV-RSYTHE 179 (311)
T ss_dssp CSEEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCC-C---CC
T ss_pred CCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCCCc-ccccCC
Confidence 999999999999999999999998764321 223345
Q ss_pred cccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC--------------------Ccc--------------
Q 046589 662 ASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP--------------------KFE-------------- 706 (729)
Q Consensus 662 ~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~--------------------~~~-------------- 706 (729)
.++.+|+|||...+ ..++.++||||+||++|||+||+.|+.. .|.
T Consensus 180 ~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3niz_A 180 VVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQ 259 (311)
T ss_dssp CCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCC
T ss_pred cccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcccc
Confidence 67899999997755 5679999999999999999999999852 010
Q ss_pred ---------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 707 ---------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 707 ---------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+ .+++.+|++.+|++|||++|++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 299 (311)
T 3niz_A 260 VFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAM 299 (311)
T ss_dssp CCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHH
T ss_pred cccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHh
Confidence 0 1699999999999999999874
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-20 Score=197.56 Aligned_cols=136 Identities=22% Similarity=0.419 Sum_probs=107.1
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
+.|.....||+|+||.||+|...+++.||||.
T Consensus 9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 88 (343)
T 3dbq_A 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 88 (343)
T ss_dssp CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence 45677788999999999999998899999995
Q ss_pred --------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCc-cee
Q 046589 625 --------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSH-IST 659 (729)
Q Consensus 625 --------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~ 659 (729)
|+||+||+++ ++.+||+|||+++........ ...
T Consensus 89 e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~ 167 (343)
T 3dbq_A 89 ECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKD 167 (343)
T ss_dssp CCCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC----------
T ss_pred eCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeecccccccCcccccccCC
Confidence 9999999997 578999999999876532221 123
Q ss_pred cccccccccCccccCC-----------CCCCchhhHHHHHHHHHHHHhCCCCCCCCcc----------------------
Q 046589 660 DVASAISYVPPEYGRA-----------RKANERDNIYRFGVVLLELVIRKQPTGPKFE---------------------- 706 (729)
Q Consensus 660 ~~~~~~~y~ape~~~~-----------~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~---------------------- 706 (729)
...+|.+|+|||.... ..++.++|||||||++|||+||+.|+.....
T Consensus 168 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (343)
T 3dbq_A 168 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPE 247 (343)
T ss_dssp --CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSC
T ss_pred CCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcccCCcccCC
Confidence 4578999999997643 6788999999999999999999999863110
Q ss_pred --hHHHHhhcccCCCCCCCCccccC
Q 046589 707 --DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 707 --~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
-.+++..|++.+|++|||+++++
T Consensus 248 ~~l~~li~~~L~~dp~~Rpt~~e~l 272 (343)
T 3dbq_A 248 KDLQDVLKCCLKRDPKQRISIPELL 272 (343)
T ss_dssp HHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred HHHHHHHHHHcCCChhHCCCHHHHH
Confidence 01799999999999999999873
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-20 Score=193.83 Aligned_cols=137 Identities=28% Similarity=0.478 Sum_probs=111.7
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+++...+.+|+|+||+||+|... +++.||+|.
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 89 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI 89 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence 45667788999999999999985 788999995
Q ss_pred -------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcc----
Q 046589 625 -------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHI---- 657 (729)
Q Consensus 625 -------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~---- 657 (729)
|+||+||+++.++.+|++|||+++.........
T Consensus 90 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~ 169 (310)
T 3s95_A 90 KGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLR 169 (310)
T ss_dssp TTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC----------
T ss_pred CCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceecccccccccccc
Confidence 999999999999999999999998764322111
Q ss_pred ---------eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcc----------------------
Q 046589 658 ---------STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFE---------------------- 706 (729)
Q Consensus 658 ---------~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~---------------------- 706 (729)
.....+|.+|+|||......++.++|||||||++|||++|..|+.....
T Consensus 170 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (310)
T 3s95_A 170 SLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCP 249 (310)
T ss_dssp ----------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCTTCC
T ss_pred cccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCCCCC
Confidence 0134688999999998888899999999999999999999988652100
Q ss_pred --hHHHHhhcccCCCCCCCCccccC
Q 046589 707 --DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 707 --~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
-.+++.+||+.+|++|||+++++
T Consensus 250 ~~l~~li~~~l~~dP~~Rps~~~l~ 274 (310)
T 3s95_A 250 PSFFPITVRCCDLDPEKRPSFVKLE 274 (310)
T ss_dssp TTHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred HHHHHHHHHHccCChhhCcCHHHHH
Confidence 01799999999999999999863
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-20 Score=207.53 Aligned_cols=137 Identities=28% Similarity=0.498 Sum_probs=112.9
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
+.+...+.||+|+||.||+|.+.++..||||.
T Consensus 188 ~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv~e~~~~g 267 (454)
T 1qcf_A 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAKG 267 (454)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEECCCTTC
T ss_pred HHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEEEeecCCC
Confidence 45666778999999999999998888999996
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|+||+||+++.++.+||+|||+++..............+
T Consensus 268 ~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~ 347 (454)
T 1qcf_A 268 SLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKF 347 (454)
T ss_dssp BHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSS
T ss_pred cHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcc
Confidence 999999999999999999999998764321111223445
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCc--------------------chH--HHHhhcccCCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGPKF--------------------EDK--DIVVGCVSDNPI 720 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~~~--------------------~~~--~l~~~c~~~~p~ 720 (729)
+..|+|||......++.++|||||||++|||+| |+.|+...- .+. +++..||..+|+
T Consensus 348 ~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~ 427 (454)
T 1qcf_A 348 PIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPE 427 (454)
T ss_dssp CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred cccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChh
Confidence 678999998877889999999999999999999 998875210 011 799999999999
Q ss_pred CCCCccccC
Q 046589 721 AKPGMLRVQ 729 (729)
Q Consensus 721 ~Rp~~~~v~ 729 (729)
+||||++|+
T Consensus 428 ~RPt~~~i~ 436 (454)
T 1qcf_A 428 ERPTFEYIQ 436 (454)
T ss_dssp GSCCHHHHH
T ss_pred HCcCHHHHH
Confidence 999999873
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-20 Score=194.70 Aligned_cols=135 Identities=27% Similarity=0.436 Sum_probs=113.9
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|.....||+|+||.||+|+.. +|+.||||.
T Consensus 17 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv 96 (345)
T 1xjd_A 17 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV 96 (345)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEE
Confidence 56777788999999999999985 788999995
Q ss_pred ----------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcce
Q 046589 625 ----------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS 658 (729)
Q Consensus 625 ----------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~ 658 (729)
|+||+||+++.++++|++|||+++...... ...
T Consensus 97 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~-~~~ 175 (345)
T 1xjd_A 97 MEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGD-AKT 175 (345)
T ss_dssp EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT-CCB
T ss_pred EeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccCC-Ccc
Confidence 999999999999999999999998643211 223
Q ss_pred ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCc------------------c-h--HHHHhhcccC
Q 046589 659 TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKF------------------E-D--KDIVVGCVSD 717 (729)
Q Consensus 659 ~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~------------------~-~--~~l~~~c~~~ 717 (729)
....||..|+|||...+..++.++||||+||++|||++|+.|+...- . + .+++.+|+..
T Consensus 176 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~ 255 (345)
T 1xjd_A 176 NTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLLVKLFVR 255 (345)
T ss_dssp CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCS
T ss_pred cCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhcC
Confidence 34678999999999888889999999999999999999999986311 1 1 1799999999
Q ss_pred CCCCCCCcc-cc
Q 046589 718 NPIAKPGML-RV 728 (729)
Q Consensus 718 ~p~~Rp~~~-~v 728 (729)
+|++||+++ ++
T Consensus 256 dp~~R~~~~~~i 267 (345)
T 1xjd_A 256 EPEKRLGVRGDI 267 (345)
T ss_dssp SGGGSBTTBSCG
T ss_pred CHhHcCCChHHH
Confidence 999999997 65
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=192.49 Aligned_cols=103 Identities=22% Similarity=0.336 Sum_probs=85.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......+|..|+|||......++.++||||+||++|||+||+.|+...
T Consensus 130 Dlkp~NIll~~~g~vkL~DFG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~ 208 (337)
T 1o6l_A 130 DIKLENLMLDKDGHIKITDFGLCKEGISDG-ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ 208 (337)
T ss_dssp CCCGGGEEECTTSCEEECCCTTCBCSCCTT-CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cCCHHHEEECCCCCEEEeeccchhhcccCC-CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC
Confidence 999999999999999999999998643222 2233467899999999988888999999999999999999999998631
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCC-----Ccccc
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKP-----GMLRV 728 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp-----~~~~v 728 (729)
-. + .+++.+|++.+|++|| +++|+
T Consensus 209 ~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei 258 (337)
T 1o6l_A 209 DHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEV 258 (337)
T ss_dssp SHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHH
Confidence 10 1 1799999999999999 77665
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.8e-20 Score=198.22 Aligned_cols=78 Identities=33% Similarity=0.446 Sum_probs=63.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCC--------------------CcceecccccccccCccccCC-CCCCchhh
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCK--------------------SHISTDVASAISYVPPEYGRA-RKANERDN 683 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~--------------------~~~~~~~~~~~~y~ape~~~~-~~~~~~~D 683 (729)
|+||+||+++.++.+|++|||+|+...... ....+...+|.+|+|||...+ ..++.++|
T Consensus 134 Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~D 213 (388)
T 3oz6_A 134 DMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGID 213 (388)
T ss_dssp CCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHH
T ss_pred CCCHHHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhh
Confidence 999999999999999999999998653210 111234578999999998765 67899999
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 046589 684 IYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 684 v~s~G~vl~el~tg~~p~~ 702 (729)
|||+||++|||+||+.||.
T Consensus 214 iwSlG~il~ell~g~~pf~ 232 (388)
T 3oz6_A 214 MWSLGCILGEILCGKPIFP 232 (388)
T ss_dssp HHHHHHHHHHHHHSSCSCC
T ss_pred HHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999985
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-20 Score=193.44 Aligned_cols=104 Identities=32% Similarity=0.595 Sum_probs=77.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++..... ........++..|+|||......++.++||||+||++|||+||+.|+...
T Consensus 164 Dikp~NIll~~~~~~kL~Dfg~a~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~ 242 (309)
T 3p86_A 164 NLKSPNLLVDKKYTVKVCDFGLSRLKAST-FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNL 242 (309)
T ss_dssp TCCGGGEEECTTCCEEECCCC------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTS
T ss_pred CCChhhEEEeCCCcEEECCCCCCcccccc-ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999865432 11223457889999999988888899999999999999999999998631
Q ss_pred c---------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 705 F---------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~---------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
- .+ .+++.+||+.+|++|||+++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll 290 (309)
T 3p86_A 243 NPAQVVAAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIM 290 (309)
T ss_dssp CHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 0 01 1799999999999999999873
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-19 Score=198.67 Aligned_cols=196 Identities=24% Similarity=0.305 Sum_probs=141.3
Q ss_pred CCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEE
Q 046589 332 QMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKL 411 (729)
Q Consensus 332 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 411 (729)
+++.|++++|.+.+ +|..+ .++|++|+|++|+++ .+| ..+++|+.|++++|.+++. |. +.. +|++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~i-p~-l~~-----~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTL-PE-LPA-----SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCC-CC-CCT-----TCCEE
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCc-ch-hhc-----CCCEE
Confidence 67888888888876 56544 367888888888887 456 4467888888888888873 43 322 68888
Q ss_pred EcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCc
Q 046589 412 DLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491 (729)
Q Consensus 412 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 491 (729)
+|++|++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|+|++|++++ +|. +. ++|+.|+|++|+|+
T Consensus 126 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 126 DVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred ECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 888888886 555 67888888888888885 665 56788888888888886 565 55 78888888888887
Q ss_pred ccccccccccccccCCCCcccCCCCCeEecCCCcCcccCCchhhccccccccccccccccccCCceeeccCCcceeeccc
Q 046589 492 RPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPT 571 (729)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~ 571 (729)
.+|. +.. .+ ......++.|++++|+++ .+|..+..+++|+.|+|++|++++.+|.
T Consensus 194 -~lp~-~~~-----~L--~~~~~~L~~L~Ls~N~l~----------------~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 194 -SLPA-VPV-----RN--HHSEETEIFFRCRENRIT----------------HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -SCCC-CC---------------CCEEEECCSSCCC----------------CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -chhh-HHH-----hh--hcccccceEEecCCCcce----------------ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 4444 220 00 011223388888888886 3556666788888888888888888887
Q ss_pred ccccccc
Q 046589 572 SFGNLNG 578 (729)
Q Consensus 572 ~~~~l~~ 578 (729)
.|..++.
T Consensus 249 ~l~~l~~ 255 (571)
T 3cvr_A 249 SLSQQTA 255 (571)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 7766543
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-20 Score=196.49 Aligned_cols=105 Identities=30% Similarity=0.389 Sum_probs=83.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCC-----CCCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRA-----RKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~-----~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||+||+++.++.+|++|||+++........ ......+|.+|+|||.... ..++.++|||||||++|||+||+
T Consensus 156 Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~ 235 (322)
T 3soc_A 156 DIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRC 235 (322)
T ss_dssp CCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred CCChHhEEECCCCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCC
Confidence 89999999999999999999999876532221 1223578899999997764 34567889999999999999999
Q ss_pred CCCCCC-------cc-------------------------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGPK-------FE-------------------------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~~-------~~-------------------------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+... +. -.+++.+||+.+|++|||+++|+
T Consensus 236 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell 310 (322)
T 3soc_A 236 TAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVG 310 (322)
T ss_dssp TTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHH
Confidence 987521 10 01689999999999999999874
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-20 Score=196.84 Aligned_cols=104 Identities=19% Similarity=0.219 Sum_probs=85.3
Q ss_pred cccccceEec--CCccEEEeecCCccccCCCCCc------ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh
Q 046589 625 DIKASNILLN--EDFDAKVLDFGLARLISDCKSH------ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI 696 (729)
Q Consensus 625 dlk~~nill~--~~~~~kl~dfgl~~~~~~~~~~------~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t 696 (729)
|+||+||+++ .++.+||+|||+++........ ......+|..|+|||...+..++.++|||||||++|||+|
T Consensus 177 Dlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~ 256 (364)
T 3op5_A 177 DIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLT 256 (364)
T ss_dssp CCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHh
Confidence 9999999999 8899999999999875432111 1123458899999999888889999999999999999999
Q ss_pred CCCCCCCCc------------------------------ch--HHHHhhcccCCCCCCCCcccc
Q 046589 697 RKQPTGPKF------------------------------ED--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 697 g~~p~~~~~------------------------------~~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
|+.|+.... .+ .+++..||+.+|++||++++|
T Consensus 257 g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~l 320 (364)
T 3op5_A 257 GHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENL 320 (364)
T ss_dssp SCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTTCCCHHHHHHHHHHHTCCTTCCCCHHHH
T ss_pred CCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcccccCHHHHHHHHHHHhcCCCCCCCCHHHH
Confidence 999987310 00 168999999999999999886
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.8e-20 Score=198.14 Aligned_cols=136 Identities=23% Similarity=0.436 Sum_probs=108.4
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
..|.....||+|+||.||+|...+++.||||.
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 45777788999999999999998899999995
Q ss_pred --------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCc-cee
Q 046589 625 --------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSH-IST 659 (729)
Q Consensus 625 --------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~ 659 (729)
|+||+||+++ ++.+||+|||+++........ ...
T Consensus 136 E~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~ 214 (390)
T 2zmd_A 136 ECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKD 214 (390)
T ss_dssp ECCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---------C
T ss_pred ecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCC
Confidence 9999999996 588999999999876532221 123
Q ss_pred cccccccccCccccCC-----------CCCCchhhHHHHHHHHHHHHhCCCCCCCCc---------------------ch
Q 046589 660 DVASAISYVPPEYGRA-----------RKANERDNIYRFGVVLLELVIRKQPTGPKF---------------------ED 707 (729)
Q Consensus 660 ~~~~~~~y~ape~~~~-----------~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~---------------------~~ 707 (729)
...+|++|+|||.... ..++.++|||||||++|||++|+.|+.... ..
T Consensus 215 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (390)
T 2zmd_A 215 SQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPE 294 (390)
T ss_dssp CSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCCCCCCCSC
T ss_pred CCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccCCCCccch
Confidence 4578999999997643 368899999999999999999999986310 00
Q ss_pred ---HHHHhhcccCCCCCCCCccccC
Q 046589 708 ---KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 708 ---~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.+++..|+..+|++|||++||+
T Consensus 295 ~~~~~li~~~L~~dP~~Rps~~ell 319 (390)
T 2zmd_A 295 KDLQDVLKCCLKRDPKQRISIPELL 319 (390)
T ss_dssp HHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred HHHHHHHHHHcccChhhCCCHHHHh
Confidence 1799999999999999999874
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-20 Score=196.68 Aligned_cols=132 Identities=24% Similarity=0.385 Sum_probs=108.1
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|.....||+|+||+||+|+.. +|+.||||.
T Consensus 23 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv 102 (353)
T 3txo_A 23 DNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFV 102 (353)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEE
Confidence 56777788999999999999975 788999995
Q ss_pred ----------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcce
Q 046589 625 ----------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS 658 (729)
Q Consensus 625 ----------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~ 658 (729)
|+||+||+++.++++||+|||+++..... ....
T Consensus 103 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~-~~~~ 181 (353)
T 3txo_A 103 MEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICN-GVTT 181 (353)
T ss_dssp EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC------
T ss_pred EeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeecccC-Cccc
Confidence 99999999999999999999999864321 1223
Q ss_pred ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcc-------------------h--HHHHhhcccC
Q 046589 659 TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFE-------------------D--KDIVVGCVSD 717 (729)
Q Consensus 659 ~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~-------------------~--~~l~~~c~~~ 717 (729)
....+|..|+|||......++.++||||+||++|||+||+.|+...-. + .+++..|+..
T Consensus 182 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~ 261 (353)
T 3txo_A 182 ATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDATGILKSFMTK 261 (353)
T ss_dssp ----CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCS
T ss_pred cccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhh
Confidence 345789999999988777889999999999999999999999863111 1 1799999999
Q ss_pred CCCCCCCc
Q 046589 718 NPIAKPGM 725 (729)
Q Consensus 718 ~p~~Rp~~ 725 (729)
+|++||++
T Consensus 262 dP~~R~~~ 269 (353)
T 3txo_A 262 NPTMRLGS 269 (353)
T ss_dssp SGGGSTTS
T ss_pred CHHHccCC
Confidence 99999998
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=195.66 Aligned_cols=100 Identities=18% Similarity=0.339 Sum_probs=83.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++++||+|||+++...... .......||..|+|||......++.++||||+||++|||++|+.|+...
T Consensus 178 DLKp~NILl~~~g~ikL~DFGla~~~~~~~-~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~ 256 (396)
T 4dc2_A 178 DLKLDNVLLDSEGHIKLTDYGMCKEGLRPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV 256 (396)
T ss_dssp CCCGGGEEECTTSCEEECCCTTCBCCCCTT-CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTT
T ss_pred cCCHHHEEECCCCCEEEeecceeeecccCC-CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccc
Confidence 999999999999999999999998643211 2234567899999999988888999999999999999999999998521
Q ss_pred -------c---------------------ch--HHHHhhcccCCCCCCCCc
Q 046589 705 -------F---------------------ED--KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 705 -------~---------------------~~--~~l~~~c~~~~p~~Rp~~ 725 (729)
. .. .+++..|++.+|++||++
T Consensus 257 ~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 257 GSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp TC------CCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred ccccccchhhHHHHHHHHhccccCCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 0 00 179999999999999996
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-19 Score=189.58 Aligned_cols=137 Identities=23% Similarity=0.328 Sum_probs=113.4
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
+.|...+.+|+|+||.||+|.. .+|+.||||.
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~ 89 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLLG 89 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECCC
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEecC
Confidence 4567778899999999999996 5888999995
Q ss_pred -----------------------------------------cccccceEecCCcc-----EEEeecCCccccCCCCCc--
Q 046589 625 -----------------------------------------DIKASNILLNEDFD-----AKVLDFGLARLISDCKSH-- 656 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~-----~kl~dfgl~~~~~~~~~~-- 656 (729)
|+||+||+++.++. +|++|||+++........
T Consensus 90 ~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~ 169 (298)
T 1csn_A 90 PSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQH 169 (298)
T ss_dssp CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCB
T ss_pred CCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECcccccccccccccc
Confidence 99999999987765 999999999876532221
Q ss_pred ----ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--c-------------------------
Q 046589 657 ----ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK--F------------------------- 705 (729)
Q Consensus 657 ----~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~--~------------------------- 705 (729)
......++..|+|||...+..++.++|||||||++|||+||+.|+... .
T Consensus 170 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (298)
T 1csn_A 170 IPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGF 249 (298)
T ss_dssp CCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTS
T ss_pred ccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhC
Confidence 123456889999999988888999999999999999999999998641 0
Q ss_pred chH--HHHhhcccCCCCCCCCccccC
Q 046589 706 EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 706 ~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.+. +++..||+.+|++|||+++|+
T Consensus 250 ~~~l~~li~~~l~~dp~~RP~~~~l~ 275 (298)
T 1csn_A 250 PEEFYKYMHYARNLAFDATPDYDYLQ 275 (298)
T ss_dssp CHHHHHHHHHHHHCCTTCCCCHHHHH
T ss_pred cHHHHHHHHHHhcCCcccCCCHHHHH
Confidence 001 799999999999999999863
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-20 Score=189.62 Aligned_cols=137 Identities=26% Similarity=0.411 Sum_probs=113.1
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
+.+.....+|+|+||.||+|...++..||||.
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 87 (268)
T 3sxs_A 8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISN 87 (268)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred hheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCC
Confidence 45666778999999999999998888899986
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|+||+||+++.++.++++|||+++..............+
T Consensus 88 ~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~ 167 (268)
T 3sxs_A 88 GCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKF 167 (268)
T ss_dssp CBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCC
T ss_pred CcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCCCc
Confidence 999999999999999999999998765432222233455
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCc--------------------ch--HHHHhhcccCCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGPKF--------------------ED--KDIVVGCVSDNPI 720 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~~~--------------------~~--~~l~~~c~~~~p~ 720 (729)
+..|+|||......++.++||||+||++||++| |+.|+...- .+ .+++..|++.+|+
T Consensus 168 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~ 247 (268)
T 3sxs_A 168 PVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRLYRPHLASDTIYQIMYSCWHELPE 247 (268)
T ss_dssp CGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHTTCSSGG
T ss_pred CcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCCCCCCCcChHHHHHHHHHHcCCChh
Confidence 678999998877778899999999999999999 988876210 01 1799999999999
Q ss_pred CCCCccccC
Q 046589 721 AKPGMLRVQ 729 (729)
Q Consensus 721 ~Rp~~~~v~ 729 (729)
+|||+++++
T Consensus 248 ~Rps~~~ll 256 (268)
T 3sxs_A 248 KRPTFQQLL 256 (268)
T ss_dssp GSCCHHHHH
T ss_pred hCcCHHHHH
Confidence 999999873
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-20 Score=189.96 Aligned_cols=137 Identities=26% Similarity=0.407 Sum_probs=112.9
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
+.|.....+|+|+||.||+|+. .+++.||||.
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~ 88 (296)
T 4hgt_A 9 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG 88 (296)
T ss_dssp --CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECCC
T ss_pred CceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEccC
Confidence 5677778899999999999997 5888999994
Q ss_pred -----------------------------------------cccccceEe---cCCccEEEeecCCccccCCCCCc----
Q 046589 625 -----------------------------------------DIKASNILL---NEDFDAKVLDFGLARLISDCKSH---- 656 (729)
Q Consensus 625 -----------------------------------------dlk~~nill---~~~~~~kl~dfgl~~~~~~~~~~---- 656 (729)
|+||+||++ +.++.+|++|||+++........
T Consensus 89 ~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~ 168 (296)
T 4hgt_A 89 PSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIP 168 (296)
T ss_dssp CBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCC
T ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCC
Confidence 999999999 78899999999999876532221
Q ss_pred --ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-C-c-------------------------ch
Q 046589 657 --ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP-K-F-------------------------ED 707 (729)
Q Consensus 657 --~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~-~-~-------------------------~~ 707 (729)
......++..|+|||...+..++.++|||||||++|||+||+.|+.. . . .+
T Consensus 169 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (296)
T 4hgt_A 169 YRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPS 248 (296)
T ss_dssp CCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCH
T ss_pred CCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhhhhccCCH
Confidence 12245788999999998888899999999999999999999999863 1 0 00
Q ss_pred H--HHHhhcccCCCCCCCCccccC
Q 046589 708 K--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 708 ~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. +++..|++.+|++|||+++|+
T Consensus 249 ~l~~li~~~l~~~p~~Rpt~~~l~ 272 (296)
T 4hgt_A 249 EFATYLNFCRSLRFDDKPDYSYLR 272 (296)
T ss_dssp HHHHHHHHHHTSCTTCCCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHH
Confidence 0 799999999999999999863
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-20 Score=192.84 Aligned_cols=105 Identities=28% Similarity=0.442 Sum_probs=82.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc---eecccccccccCccccCCC------CCCchhhHHHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI---STDVASAISYVPPEYGRAR------KANERDNIYRFGVVLLELV 695 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~---~~~~~~~~~y~ape~~~~~------~~~~~~Dv~s~G~vl~el~ 695 (729)
|+||+||+++.++.+|++|||+++......... .....+|.+|+|||..... .++.++|||||||++|||+
T Consensus 138 Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~ 217 (301)
T 3q4u_A 138 DLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVA 217 (301)
T ss_dssp CCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHH
Confidence 899999999999999999999998765332221 1234788999999987654 4457899999999999999
Q ss_pred hC----------CCCCCCC----------------------cc-----------hHHHHhhcccCCCCCCCCccccC
Q 046589 696 IR----------KQPTGPK----------------------FE-----------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 696 tg----------~~p~~~~----------------------~~-----------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|| +.|+... .. -.+++..||+.+|++|||+++|+
T Consensus 218 tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~ 294 (301)
T 3q4u_A 218 RRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIK 294 (301)
T ss_dssp TTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred hhhcCccccccccccccccCCCCcchhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHH
Confidence 99 7776420 00 01799999999999999999873
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-20 Score=190.48 Aligned_cols=137 Identities=27% Similarity=0.443 Sum_probs=112.4
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
+.+.....+|+|+||.||+|...+++.||||.
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 89 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEH 89 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCC
Confidence 45666678999999999999998888999996
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|+||+||+++.++.+|++|||+++..............+
T Consensus 90 ~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 169 (269)
T 4hcu_A 90 GCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 169 (269)
T ss_dssp CBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTC
T ss_pred CcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEeccccccccccccccccccCccc
Confidence 999999999999999999999998654321111223455
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCcc--------------------h--HHHHhhcccCCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGPKFE--------------------D--KDIVVGCVSDNPI 720 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~~~~--------------------~--~~l~~~c~~~~p~ 720 (729)
+..|+|||......++.++||||+||++|||+| |+.|+...-. + .+++..|++.+|+
T Consensus 170 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~ 249 (269)
T 4hcu_A 170 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPE 249 (269)
T ss_dssp CGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred ccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHccCCcc
Confidence 678999998877889999999999999999999 8888763110 0 1799999999999
Q ss_pred CCCCccccC
Q 046589 721 AKPGMLRVQ 729 (729)
Q Consensus 721 ~Rp~~~~v~ 729 (729)
+|||+++++
T Consensus 250 ~Rps~~~ll 258 (269)
T 4hcu_A 250 DRPAFSRLL 258 (269)
T ss_dssp GSCCHHHHH
T ss_pred cCcCHHHHH
Confidence 999999863
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-19 Score=191.67 Aligned_cols=105 Identities=20% Similarity=0.379 Sum_probs=84.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++........ ......++.+|+|||......++.++|||||||++||++| |+.|+.
T Consensus 140 Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~ 219 (325)
T 3kex_A 140 NLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYA 219 (325)
T ss_dssp CCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred ccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCcc
Confidence 99999999999999999999999886543222 2234567789999998887889999999999999999999 999986
Q ss_pred C-Ccc---------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFE---------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~---------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... -.+++.+||+.+|++|||+++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~ 268 (325)
T 3kex_A 220 GLRLAEVPDLLEKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELA 268 (325)
T ss_dssp TSCTTHHHHHHHTTCBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHH
T ss_pred ccCHHHHHHHHHcCCCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 3 111 00799999999999999999863
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=188.31 Aligned_cols=104 Identities=22% Similarity=0.352 Sum_probs=84.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCC-CCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARK-ANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~-~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..... ........++.+|+|||...+.. ++.++||||+||++|||+||+.|+..
T Consensus 126 dikp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~ 204 (292)
T 3o0g_A 126 DLKPQNLLINRNGELKLANFGLARAFGIP-VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP 204 (292)
T ss_dssp CCSGGGEEECTTSCEEECCCTTCEECCSC-CSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCC
T ss_pred CCCHHHEEEcCCCCEEEeecccceecCCc-cccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcC
Confidence 99999999999999999999999876432 12233456788999999876544 79999999999999999999988531
Q ss_pred C---------------------cc----------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K---------------------FE----------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~---------------------~~----------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. |. + .+++..|++.+|++|||++|++
T Consensus 205 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 281 (292)
T 3o0g_A 205 GNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEAL 281 (292)
T ss_dssp CSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHh
Confidence 0 10 0 1799999999999999999873
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-19 Score=193.24 Aligned_cols=100 Identities=25% Similarity=0.397 Sum_probs=84.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC---CCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++.+|++|||+++.... .....++.+|+|||... ...++.++|||||||++|||+||+.|+
T Consensus 179 Dlkp~NIll~~~~~~kL~DfG~a~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~ 253 (348)
T 1u5q_A 179 DVKAGNILLSEPGLVKLGDFGSASIMAP-----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 253 (348)
T ss_dssp CCSGGGEEEETTTEEEECCCTTCBSSSS-----BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CCCHHHEEECCCCCEEEeeccCceecCC-----CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999987543 12346789999999763 567899999999999999999999997
Q ss_pred CCC---------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPK---------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~---------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... |.+. +++..||+.+|++|||+++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll 304 (348)
T 1u5q_A 254 FNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLL 304 (348)
T ss_dssp TTSCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHh
Confidence 521 1111 799999999999999999875
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.4e-20 Score=199.62 Aligned_cols=136 Identities=22% Similarity=0.329 Sum_probs=112.9
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|...+.||+|+||+||+|+.. +++.||||.
T Consensus 74 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV~ 153 (437)
T 4aw2_A 74 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVM 153 (437)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEEEEE
Confidence 57778889999999999999986 678899995
Q ss_pred ----------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcce
Q 046589 625 ----------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS 658 (729)
Q Consensus 625 ----------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~ 658 (729)
|+||+||+++.++.+||+|||+|+..........
T Consensus 154 Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~~~ 233 (437)
T 4aw2_A 154 DYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQS 233 (437)
T ss_dssp CCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEEC
T ss_pred ecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCccc
Confidence 9999999999999999999999987654333333
Q ss_pred ecccccccccCccccC-----CCCCCchhhHHHHHHHHHHHHhCCCCCCCCc------------------------ch--
Q 046589 659 TDVASAISYVPPEYGR-----ARKANERDNIYRFGVVLLELVIRKQPTGPKF------------------------ED-- 707 (729)
Q Consensus 659 ~~~~~~~~y~ape~~~-----~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~------------------------~~-- 707 (729)
....||++|+|||+.. ...++.++||||+||++|||+||+.|+...- .+
T Consensus 234 ~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~ 313 (437)
T 4aw2_A 234 SVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENA 313 (437)
T ss_dssp CSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCSSCCCSCHHH
T ss_pred ccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccCCcccccCCHHH
Confidence 4467899999999875 4568999999999999999999999986310 01
Q ss_pred HHHHhhcccCCCCC--CCCcccc
Q 046589 708 KDIVVGCVSDNPIA--KPGMLRV 728 (729)
Q Consensus 708 ~~l~~~c~~~~p~~--Rp~~~~v 728 (729)
.+++.+|++.+|++ ||+++|+
T Consensus 314 ~dLi~~lL~~~~~r~~r~~~~ei 336 (437)
T 4aw2_A 314 KDLIRRLICSREHRLGQNGIEDF 336 (437)
T ss_dssp HHHHHTTSSCGGGCTTTTTTHHH
T ss_pred HHHHHHHhcccccccCCCCHHHH
Confidence 17899999888877 9999876
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-19 Score=193.25 Aligned_cols=102 Identities=23% Similarity=0.349 Sum_probs=83.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC---CCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA---RKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~---~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++.+||+|||+++..... .......+|.+|+|||.... ..++.++||||+||++|||+||+.|+
T Consensus 140 Dlkp~NIll~~~g~vkL~DFG~a~~~~~~--~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf 217 (384)
T 4fr4_A 140 DMKPDNILLDEHGHVHITDFNIAAMLPRE--TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPY 217 (384)
T ss_dssp CCSGGGEEECTTSCEEECCCTTCEECCTT--CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred cCcHHHeEECCCCCEEEeccceeeeccCC--CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCC
Confidence 99999999999999999999999876532 22345678999999998753 45889999999999999999999998
Q ss_pred CCC----------------------cchH--HHHhhcccCCCCCCCC-cccc
Q 046589 702 GPK----------------------FEDK--DIVVGCVSDNPIAKPG-MLRV 728 (729)
Q Consensus 702 ~~~----------------------~~~~--~l~~~c~~~~p~~Rp~-~~~v 728 (729)
... |.+. +++..|+..+|++||+ +++|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l 269 (384)
T 4fr4_A 218 HIRSSTSSKEIVHTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDV 269 (384)
T ss_dssp CCCTTSCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHH
T ss_pred CCCCCccHHHHHHHHhhcccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHH
Confidence 631 1111 7999999999999998 5543
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.5e-20 Score=189.38 Aligned_cols=104 Identities=21% Similarity=0.284 Sum_probs=81.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++...... .......++.+|+|||...+ ..++.++||||+||++|||+||+.|+..
T Consensus 125 dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~ 203 (288)
T 1ob3_A 125 DLKPQNLLINREGELKIADFGLARAFGIPV-RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPG 203 (288)
T ss_dssp CCCGGGEEECTTSCEEECCTTHHHHHCC----------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CCCHHHEEEcCCCCEEEeECccccccCccc-cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999998754211 12234467889999998754 4589999999999999999999998752
Q ss_pred C--------------------cc----------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K--------------------FE----------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~--------------------~~----------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. |. + .+++.+|++.+|++|||++|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l 279 (288)
T 1ob3_A 204 VSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQAL 279 (288)
T ss_dssp SSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence 0 10 0 1799999999999999999873
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-20 Score=195.72 Aligned_cols=105 Identities=22% Similarity=0.335 Sum_probs=84.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++........ ......++..|+|||...+..++.++|||||||++|||+| |+.|+.
T Consensus 142 Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~ 221 (327)
T 3poz_A 142 DLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 221 (327)
T ss_dssp CCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred CCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999876533222 1223455778999998888889999999999999999999 999976
Q ss_pred C-Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... . .+++.+||+.+|++||+|++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell 270 (327)
T 3poz_A 222 GIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 270 (327)
T ss_dssp TCCGGGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHH
Confidence 3 110 0 1799999999999999999873
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=171.66 Aligned_cols=152 Identities=24% Similarity=0.262 Sum_probs=130.3
Q ss_pred EEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccC
Q 046589 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188 (729)
Q Consensus 109 ~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 188 (729)
.++++++.++ .+|..+. ++|++|+|++|.++++.+..|..+++|++|+|++|++++..|..|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4677777776 4565544 689999999999998888889999999999999999998889999999999999999999
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccc
Q 046589 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG 264 (729)
Q Consensus 189 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 264 (729)
++...+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.++ .++...|..+++|++|++++|.+..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcCC
Confidence 98666667888999999999999999888888999999999999999998 4555778889999999999998864
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-19 Score=192.90 Aligned_cols=106 Identities=31% Similarity=0.418 Sum_probs=92.4
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
+.|.....||.|+||.||+|+. .+++.||||.
T Consensus 35 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv 114 (360)
T 3llt_A 35 NAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLI 114 (360)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEEE
T ss_pred CEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEEE
Confidence 5677788899999999999998 4788999995
Q ss_pred -----------------------------------------------cccccceEecC----------------------
Q 046589 625 -----------------------------------------------DIKASNILLNE---------------------- 635 (729)
Q Consensus 625 -----------------------------------------------dlk~~nill~~---------------------- 635 (729)
|+||+||+++.
T Consensus 115 ~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~ 194 (360)
T 3llt_A 115 FEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIY 194 (360)
T ss_dssp ECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEE
T ss_pred EcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccccchhccccccccccc
Confidence 99999999975
Q ss_pred ---CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 636 ---DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 636 ---~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
++.+||+|||+++..... .....++..|+|||......++.++||||+||++|||+||+.|+.
T Consensus 195 ~~~~~~~kl~DFG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~ 260 (360)
T 3llt_A 195 RTKSTGIKLIDFGCATFKSDY----HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFR 260 (360)
T ss_dssp EESCCCEEECCCTTCEETTSC----CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred ccCCCCEEEEeccCceecCCC----CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCC
Confidence 789999999999875431 224567889999999888889999999999999999999999985
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-20 Score=193.12 Aligned_cols=105 Identities=24% Similarity=0.441 Sum_probs=82.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce--ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS--TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~--~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||+||+++.++.+||+|||+++.......... ....++..|+|||......++.++|||||||++|||++ |+.|+
T Consensus 176 Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~ 255 (325)
T 3kul_A 176 DLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPY 255 (325)
T ss_dssp CCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred CCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999987653222211 23345678999998877788999999999999999999 99987
Q ss_pred CCC--------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPK--------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~--------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... +.+. +++..||..+|++|||+++|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil 305 (325)
T 3kul_A 256 WNMTNRDVISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIV 305 (325)
T ss_dssp TTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred ccCCHHHHHHHHHcCCCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 521 0111 799999999999999999874
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.4e-20 Score=192.34 Aligned_cols=137 Identities=25% Similarity=0.420 Sum_probs=112.4
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|.....||+|+||+||+|+.. +++.||||.
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 86 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence 45667788999999999999875 888999985
Q ss_pred -------------------------------------------cccccceEecCCccEEEeecCCccccCCCCC-cceec
Q 046589 625 -------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTD 660 (729)
Q Consensus 625 -------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~ 660 (729)
|+||+||+++.++.+||+|||+++....... .....
T Consensus 87 ~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~ 166 (323)
T 3tki_A 87 CSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 166 (323)
T ss_dssp CTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCS
T ss_pred CCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCC
Confidence 9999999999999999999999986542211 12234
Q ss_pred ccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCCCC-------------------cc---h--HHHHhhcc
Q 046589 661 VASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTGPK-------------------FE---D--KDIVVGCV 715 (729)
Q Consensus 661 ~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~~~-------------------~~---~--~~l~~~c~ 715 (729)
..++.+|+|||......+ +.++||||+||++|||+||+.|+... |. . .+++.+|+
T Consensus 167 ~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L 246 (323)
T 3tki_A 167 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKIL 246 (323)
T ss_dssp CCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHS
T ss_pred CccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCccccCCHHHHHHHHHHc
Confidence 578899999998766554 77899999999999999999998631 00 0 17999999
Q ss_pred cCCCCCCCCccccC
Q 046589 716 SDNPIAKPGMLRVQ 729 (729)
Q Consensus 716 ~~~p~~Rp~~~~v~ 729 (729)
+.+|++|||++|++
T Consensus 247 ~~dP~~R~t~~eil 260 (323)
T 3tki_A 247 VENPSARITIPDIK 260 (323)
T ss_dssp CSSTTTSCCHHHHT
T ss_pred cCChhhCcCHHHHh
Confidence 99999999999874
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=6.8e-20 Score=197.38 Aligned_cols=105 Identities=25% Similarity=0.434 Sum_probs=74.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce--ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS--TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~--~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||+||+++.++.+|++|||+++.......... ....++.+|+|||......++.++|||||||++||+++ |+.|+
T Consensus 172 Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~ 251 (373)
T 2qol_A 172 DLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPY 251 (373)
T ss_dssp CCCGGGEEECTTCCEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTT
T ss_pred CCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999987653222111 12234568999998887889999999999999999998 99997
Q ss_pred CCC--------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPK--------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~--------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... +... +++..||+.+|++||+|++|+
T Consensus 252 ~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~ 301 (373)
T 2qol_A 252 WEMSNQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIV 301 (373)
T ss_dssp TTCCHHHHHHHHHTTEECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHH
Confidence 521 0011 799999999999999999873
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-19 Score=194.42 Aligned_cols=105 Identities=25% Similarity=0.408 Sum_probs=85.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+||+|||+++........ ......++..|+|||......++.++|||||||++|||+| |+.|+.
T Consensus 228 Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~ 307 (370)
T 2psq_A 228 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP 307 (370)
T ss_dssp CCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred ccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999875432211 1223455678999998888889999999999999999999 888875
Q ss_pred C-Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... . .+++..||+.+|++|||++|++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell 356 (370)
T 2psq_A 308 GIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLV 356 (370)
T ss_dssp TCCGGGHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 3 111 0 1799999999999999999874
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.3e-20 Score=189.24 Aligned_cols=137 Identities=28% Similarity=0.398 Sum_probs=109.4
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
+.+.....||.|+||.||+|...++..||||.
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 103 (283)
T 3gen_A 24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMAN 103 (283)
T ss_dssp GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTT
T ss_pred HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCC
Confidence 46667778999999999999999888999996
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|+||+||+++.++.+|++|||+++..............+
T Consensus 104 ~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 183 (283)
T 3gen_A 104 GCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKF 183 (283)
T ss_dssp CBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTS
T ss_pred CcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEccccccccccccccccccCCcc
Confidence 999999999999999999999998654321111123345
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCc--------------------chH--HHHhhcccCCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGPKF--------------------EDK--DIVVGCVSDNPI 720 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~~~--------------------~~~--~l~~~c~~~~p~ 720 (729)
+..|+|||......++.++||||+||++|||+| |+.|+...- .+. +++..|++.+|+
T Consensus 184 ~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~ 263 (283)
T 3gen_A 184 PVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKAD 263 (283)
T ss_dssp CGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGG
T ss_pred CcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCCCCCCcCCHHHHHHHHHHccCChh
Confidence 678999998877788999999999999999999 988876210 011 799999999999
Q ss_pred CCCCccccC
Q 046589 721 AKPGMLRVQ 729 (729)
Q Consensus 721 ~Rp~~~~v~ 729 (729)
+|||+++++
T Consensus 264 ~Rps~~~ll 272 (283)
T 3gen_A 264 ERPTFKILL 272 (283)
T ss_dssp GSCCHHHHH
T ss_pred HCcCHHHHH
Confidence 999999873
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-19 Score=191.44 Aligned_cols=101 Identities=20% Similarity=0.342 Sum_probs=84.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++++|++|||+++...... .......+|..|+|||......++.++||||+||++|||++|+.|+...
T Consensus 164 Dlkp~NIll~~~g~ikL~DFG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~ 242 (373)
T 2r5t_A 164 DLKPENILLDSQGHIVLTDFGLCKENIEHN-STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR 242 (373)
T ss_dssp CCCGGGEEECTTSCEEECCCCBCGGGBCCC-CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred CCCHHHEEECCCCCEEEeeCccccccccCC-CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence 999999999999999999999998643211 2233567899999999988888999999999999999999999998631
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCCCcc
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp~~~ 726 (729)
-. . .+++..|++.+|++||++.
T Consensus 243 ~~~~~~~~i~~~~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~ 285 (373)
T 2r5t_A 243 NTAEMYDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAK 285 (373)
T ss_dssp BHHHHHHHHHHSCCCCCSSSCHHHHHHHHHHTCSSGGGSTTTT
T ss_pred CHHHHHHHHHhcccCCCCCCCHHHHHHHHHHcccCHHhCCCCC
Confidence 11 1 1799999999999999985
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-19 Score=197.16 Aligned_cols=136 Identities=21% Similarity=0.343 Sum_probs=112.9
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|.....||+|+||+||+|+.. +++.||||.
T Consensus 69 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~ 148 (410)
T 3v8s_A 69 EDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVM 148 (410)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEE
Confidence 56777888999999999999985 688999995
Q ss_pred --------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceec
Q 046589 625 --------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTD 660 (729)
Q Consensus 625 --------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~ 660 (729)
|+||+||+++.++++||+|||+|+............
T Consensus 149 E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~ 228 (410)
T 3v8s_A 149 EYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDT 228 (410)
T ss_dssp CCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECCS
T ss_pred eCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeeccCCcccccC
Confidence 999999999999999999999998765432222335
Q ss_pred ccccccccCccccCCCC----CCchhhHHHHHHHHHHHHhCCCCCCCCc-----------------c------h--HHHH
Q 046589 661 VASAISYVPPEYGRARK----ANERDNIYRFGVVLLELVIRKQPTGPKF-----------------E------D--KDIV 711 (729)
Q Consensus 661 ~~~~~~y~ape~~~~~~----~~~~~Dv~s~G~vl~el~tg~~p~~~~~-----------------~------~--~~l~ 711 (729)
..||+.|+|||...... ++.++||||+||++|||+||+.|+...- . + .+++
T Consensus 229 ~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li 308 (410)
T 3v8s_A 229 AVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLI 308 (410)
T ss_dssp CCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCTTCCCCHHHHHHH
T ss_pred CcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccCCCcccccHHHHHHH
Confidence 67899999999876543 7889999999999999999999986310 0 1 1799
Q ss_pred hhcccCCCCC--CCCcccc
Q 046589 712 VGCVSDNPIA--KPGMLRV 728 (729)
Q Consensus 712 ~~c~~~~p~~--Rp~~~~v 728 (729)
.+|+..+|.+ ||+++||
T Consensus 309 ~~lL~~~~~rlgR~~~~ei 327 (410)
T 3v8s_A 309 CAFLTDREVRLGRNGVEEI 327 (410)
T ss_dssp HHHSSCGGGCTTSSCHHHH
T ss_pred HHHccChhhhCCCCCHHHH
Confidence 9999999988 9999886
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-19 Score=190.62 Aligned_cols=104 Identities=19% Similarity=0.274 Sum_probs=80.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..... ........++.+|+|||...+ ..++.++||||+||++|||+||+.|+..
T Consensus 125 Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~ 203 (324)
T 3mtl_A 125 DLKPQNLLINERGELKLADFGLARAKSIP-TKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPG 203 (324)
T ss_dssp SCCGGGEEECTTCCEEECSSSEEECC-------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CcCHHHEEECCCCCEEEccCcccccccCC-ccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999765422 122234567889999997765 5689999999999999999999999852
Q ss_pred C--------------------cc-----------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K--------------------FE-----------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~--------------------~~-----------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. |. + .+++..|++.+|++|||++|++
T Consensus 204 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 280 (324)
T 3mtl_A 204 STVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAM 280 (324)
T ss_dssp SSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHT
T ss_pred CCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHh
Confidence 1 10 0 1799999999999999999875
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-19 Score=185.32 Aligned_cols=104 Identities=23% Similarity=0.432 Sum_probs=85.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCC---CCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARK---ANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~---~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||...... ++.++||||+||++|||++|+.|+
T Consensus 162 Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf 240 (298)
T 2zv2_A 162 DIKPSNLLVGEDGHIKIADFGVSNEFKGSD-ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPF 240 (298)
T ss_dssp CCCGGGEEECTTSCEEECCCTTCEECSSSS-CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CCCHHHEEECCCCCEEEecCCCcccccccc-ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCC
Confidence 999999999999999999999998765322 2233457889999999876544 377899999999999999999997
Q ss_pred CCC---------------c------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPK---------------F------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~---------------~------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... + .+ .+++.+|++.+|++|||++|++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l 291 (298)
T 2zv2_A 241 MDERIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIK 291 (298)
T ss_dssp CCSSHHHHHHHHHHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHT
T ss_pred CCccHHHHHHHHhcccCCCCCccccCHHHHHHHHHHhhcChhhCCCHHHHh
Confidence 631 0 01 1799999999999999999874
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=188.82 Aligned_cols=103 Identities=24% Similarity=0.335 Sum_probs=86.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++..... .......+|.+|+|||......++.++||||+||++|||+||+.|+...
T Consensus 145 Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~ 222 (308)
T 3g33_A 145 DLKPENILVTSGGTVKLADFGLARIYSYQ--MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN 222 (308)
T ss_dssp CCCTTTEEECTTSCEEECSCSCTTTSTTC--CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCS
T ss_pred CCCHHHEEEcCCCCEEEeeCccccccCCC--cccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999875432 2223457789999999888888999999999999999999999998521
Q ss_pred --------------------cc--------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 705 --------------------FE--------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 --------------------~~--------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|. + .+++..|++.+|++|||++|++
T Consensus 223 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 295 (308)
T 3g33_A 223 SEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRAL 295 (308)
T ss_dssp SHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHh
Confidence 10 0 1699999999999999999863
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-19 Score=188.09 Aligned_cols=104 Identities=23% Similarity=0.506 Sum_probs=79.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++..............++..|+|||......++.++||||+||++|||+||+.|+...
T Consensus 136 Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~ 215 (294)
T 4eqm_A 136 DIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGE 215 (294)
T ss_dssp CCCGGGEEECTTSCEEECCCSSSTTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred CCCHHHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999876532222233456889999999888888899999999999999999999998631
Q ss_pred cc------------------------h--HHHHhhcccCCCCCCC-Ccccc
Q 046589 705 FE------------------------D--KDIVVGCVSDNPIAKP-GMLRV 728 (729)
Q Consensus 705 ~~------------------------~--~~l~~~c~~~~p~~Rp-~~~~v 728 (729)
-. + .+++.+|++.+|++|| +++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l 266 (294)
T 4eqm_A 216 TAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEM 266 (294)
T ss_dssp CHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHH
T ss_pred ChHHHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHH
Confidence 10 0 1799999999999999 66553
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-19 Score=189.40 Aligned_cols=104 Identities=24% Similarity=0.442 Sum_probs=68.8
Q ss_pred cccccceEecCCc---cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDF---DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~---~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++ .+|++|||+++...... .......++.+|+|||......++.++||||+||++|||+||+.|+
T Consensus 131 Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf 209 (325)
T 3kn6_A 131 DLKPENLLFTDENDNLEIKIIDFGFARLKPPDN-QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPF 209 (325)
T ss_dssp CCCGGGEEEEC----CEEEECCCTTCEECCC-----------------------CCCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred CCCHHHEEEecCCCcccEEEeccccceecCCCC-CcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCC
Confidence 9999999998655 89999999998754322 2223456789999999988888999999999999999999999998
Q ss_pred CCCc----------------------c--------h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPKF----------------------E--------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~----------------------~--------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.... . + .+++..|+..+|++|||+++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell 269 (325)
T 3kn6_A 210 QSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLR 269 (325)
T ss_dssp C-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTST
T ss_pred CCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHh
Confidence 6310 0 0 0799999999999999999985
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-19 Score=188.34 Aligned_cols=137 Identities=26% Similarity=0.407 Sum_probs=113.9
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
+.|.....+|+|+||.||+|+. .+|+.||||.
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~ 88 (296)
T 3uzp_A 9 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG 88 (296)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECCC
T ss_pred cEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEecC
Confidence 5677778899999999999997 5888999995
Q ss_pred -----------------------------------------cccccceEe---cCCccEEEeecCCccccCCCCCc----
Q 046589 625 -----------------------------------------DIKASNILL---NEDFDAKVLDFGLARLISDCKSH---- 656 (729)
Q Consensus 625 -----------------------------------------dlk~~nill---~~~~~~kl~dfgl~~~~~~~~~~---- 656 (729)
|+||+||++ +.++.+|++|||+++........
T Consensus 89 ~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~ 168 (296)
T 3uzp_A 89 PSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIP 168 (296)
T ss_dssp CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCC
T ss_pred CCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccc
Confidence 999999999 47889999999999876533221
Q ss_pred --ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-Cc--------------------------ch
Q 046589 657 --ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP-KF--------------------------ED 707 (729)
Q Consensus 657 --~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~-~~--------------------------~~ 707 (729)
......++..|+|||...+..++.++|||||||++|||+||+.|+.. .. .+
T Consensus 169 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (296)
T 3uzp_A 169 YRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPS 248 (296)
T ss_dssp CCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCH
T ss_pred cccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCH
Confidence 12345788999999998888899999999999999999999999863 10 00
Q ss_pred H--HHHhhcccCCCCCCCCccccC
Q 046589 708 K--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 708 ~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. +++..||+.+|++|||+++|+
T Consensus 249 ~l~~li~~~l~~dp~~Rps~~~l~ 272 (296)
T 3uzp_A 249 EFATYLNFCRSLRFDDKPDYSYLR 272 (296)
T ss_dssp HHHHHHHHHHTSCTTCCCCHHHHH
T ss_pred HHHHHHHHHHhcCcCcCCCHHHHH
Confidence 1 799999999999999999863
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=195.20 Aligned_cols=133 Identities=28% Similarity=0.377 Sum_probs=60.9
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEcc
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 209 (729)
+|++|+|++|.+++++ ..+ .++|++|+|++|+|+ .+| ..+++|++|+|++|++++ +|. +.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp-~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLP-DNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCC-SCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccC-HhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 4455555555554422 222 134555555555554 344 234455555555555543 343 333 55555555
Q ss_pred CCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccc
Q 046589 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQF 286 (729)
Q Consensus 210 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l 286 (729)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|+|++|.+++ +|. +. ++|+.|++++|.+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCC
Confidence 555543 333 34455555555555542 332 34455555555555543 333 32 3444444444433
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-20 Score=199.07 Aligned_cols=137 Identities=26% Similarity=0.410 Sum_probs=110.3
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+++...+.||+|+||.||+|... +++.||||.
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 193 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMEL 193 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEc
Confidence 45666778999999999999986 788999995
Q ss_pred --------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcce-e
Q 046589 625 --------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS-T 659 (729)
Q Consensus 625 --------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~-~ 659 (729)
|+||+||+++.++.+||+|||+++.......... .
T Consensus 194 ~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~ 273 (377)
T 3cbl_A 194 VQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGG 273 (377)
T ss_dssp CTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSS
T ss_pred CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCC
Confidence 9999999999999999999999986442111111 1
Q ss_pred cccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCCC--------------------cchH--HHHhhccc
Q 046589 660 DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGPK--------------------FEDK--DIVVGCVS 716 (729)
Q Consensus 660 ~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~~--------------------~~~~--~l~~~c~~ 716 (729)
...++..|+|||......++.++|||||||++||++| |+.|+... ..+. +++..||+
T Consensus 274 ~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~ 353 (377)
T 3cbl_A 274 LRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQCWA 353 (377)
T ss_dssp CCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTC
T ss_pred CCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcC
Confidence 1234668999998877788999999999999999999 88887521 0011 79999999
Q ss_pred CCCCCCCCccccC
Q 046589 717 DNPIAKPGMLRVQ 729 (729)
Q Consensus 717 ~~p~~Rp~~~~v~ 729 (729)
.+|++||||++|+
T Consensus 354 ~dP~~Rps~~~i~ 366 (377)
T 3cbl_A 354 YEPGQRPSFSTIY 366 (377)
T ss_dssp SSGGGSCCHHHHH
T ss_pred CCchhCcCHHHHH
Confidence 9999999999873
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=8.3e-20 Score=201.93 Aligned_cols=137 Identities=30% Similarity=0.512 Sum_probs=107.5
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
+.+.....||+|+||.||+|.+.++..||||.
T Consensus 184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~e~~~~g 263 (452)
T 1fmk_A 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKG 263 (452)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTC
T ss_pred hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEehhhcCC
Confidence 45566677999999999999998888899996
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|+||+||+++.++.+||+|||+++..............+
T Consensus 264 sL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~ 343 (452)
T 1fmk_A 264 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF 343 (452)
T ss_dssp BHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------C
T ss_pred CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcc
Confidence 999999999999999999999998765322222233456
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCc--------------------ch--HHHHhhcccCCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGPKF--------------------ED--KDIVVGCVSDNPI 720 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~~~--------------------~~--~~l~~~c~~~~p~ 720 (729)
+..|+|||......++.++|||||||++|||+| |+.|+...- .+ .+++..||+.+|+
T Consensus 344 ~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~ 423 (452)
T 1fmk_A 344 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 423 (452)
T ss_dssp CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred cccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChh
Confidence 778999998877889999999999999999999 888875210 01 1799999999999
Q ss_pred CCCCccccC
Q 046589 721 AKPGMLRVQ 729 (729)
Q Consensus 721 ~Rp~~~~v~ 729 (729)
+|||+++++
T Consensus 424 ~Rpt~~~l~ 432 (452)
T 1fmk_A 424 ERPTFEYLQ 432 (452)
T ss_dssp GSCCHHHHH
T ss_pred hCcCHHHHH
Confidence 999999863
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-19 Score=198.01 Aligned_cols=74 Identities=24% Similarity=0.284 Sum_probs=64.2
Q ss_pred cccccceEecCCcc--EEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFD--AKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~--~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++. +||+|||+++..... .....+|.+|+|||......++.++|||||||++|||+||+.|+.
T Consensus 225 DlKp~NILl~~~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~ 300 (429)
T 3kvw_A 225 DLKPENILLKQQGRSGIKVIDFGSSCYEHQR----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLP 300 (429)
T ss_dssp CCSGGGEEESSTTSCCEEECCCTTCEETTCC----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCCHHHeEEccCCCcceEEeecccceecCCc----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCC
Confidence 99999999998876 999999999764421 224567889999999888889999999999999999999998875
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-19 Score=189.73 Aligned_cols=103 Identities=23% Similarity=0.323 Sum_probs=85.8
Q ss_pred cccccceEecCCc----cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDF----DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~----~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++ .+|++|||+++...... ......++..|+|||......++.++||||+||++|||+||+.|
T Consensus 139 Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~p 216 (326)
T 2y0a_A 139 DLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGN--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 216 (326)
T ss_dssp CCCGGGEEESCSSSSSCCEEECCCTTCEECCTTS--CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCS
T ss_pred CCCHHHEEEecCCCCCCCEEEEECCCCeECCCCC--ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCC
Confidence 9999999999877 89999999998764321 22345688999999998888899999999999999999999999
Q ss_pred CCCCc---------------ch----------HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPKF---------------ED----------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~~---------------~~----------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+.... .. .+++..|+..+|++|||+++++
T Consensus 217 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l 270 (326)
T 2y0a_A 217 FLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSL 270 (326)
T ss_dssp SCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCcCccccccCCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 86311 00 1799999999999999999873
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=191.09 Aligned_cols=103 Identities=26% Similarity=0.435 Sum_probs=85.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++...... ......++.+|+|||......+ +.++||||+||++|||++|+.|+..
T Consensus 155 Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~ 232 (335)
T 3dls_A 155 DIKDENIVIAEDFTIKLIDFGSAAYLERGK--LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCE 232 (335)
T ss_dssp CCSGGGEEECTTSCEEECCCTTCEECCTTC--CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSS
T ss_pred ccCHHHEEEcCCCcEEEeecccceECCCCC--ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhh
Confidence 999999999999999999999998765322 2234568899999998877665 7889999999999999999999862
Q ss_pred C-------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 704 K-------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~-------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. +.+. +++..|++.+|++|||+++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell 273 (335)
T 3dls_A 233 LEETVEAAIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLV 273 (335)
T ss_dssp GGGGTTTCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred HHHHHhhccCCCcccCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 0 1111 899999999999999999874
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-19 Score=187.30 Aligned_cols=104 Identities=23% Similarity=0.307 Sum_probs=84.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++...... .......++.+|+|||...+ ..++.++||||+||++|||+||+.|+..
T Consensus 133 Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~ 211 (317)
T 2pmi_A 133 DLKPQNLLINKRGQLKLGDFGLARAFGIPV-NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPG 211 (317)
T ss_dssp CCCGGGEEECTTCCEEECCCSSCEETTSCC-CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CCChHHeEEcCCCCEEECcCccceecCCCc-ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999998754321 12234567889999998765 4679999999999999999999999752
Q ss_pred C--------------------c---------------------------------ch--HHHHhhcccCCCCCCCCcccc
Q 046589 704 K--------------------F---------------------------------ED--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 704 ~--------------------~---------------------------------~~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
. | .. .+++..|++.+|++|||++|+
T Consensus 212 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~ 291 (317)
T 2pmi_A 212 TNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQA 291 (317)
T ss_dssp SSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred CChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHH
Confidence 1 0 00 178999999999999999987
Q ss_pred C
Q 046589 729 Q 729 (729)
Q Consensus 729 ~ 729 (729)
+
T Consensus 292 l 292 (317)
T 2pmi_A 292 L 292 (317)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-19 Score=199.09 Aligned_cols=77 Identities=31% Similarity=0.392 Sum_probs=62.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+||+|||+|+..... ...+...+|.+|+|||...+..++.++||||+||++|||++|+.||..
T Consensus 189 Dlkp~NIll~~~~~~kl~DFG~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g 265 (464)
T 3ttj_A 189 DLKPSNIVVKSDCTLKILDFGLARTAGTS--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPG 265 (464)
T ss_dssp CCCGGGEEECTTSCEEECCCCCC-----C--CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CCChHhEEEeCCCCEEEEEEEeeeecCCC--cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999876432 223456789999999998888899999999999999999999999863
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-19 Score=189.51 Aligned_cols=136 Identities=20% Similarity=0.271 Sum_probs=112.6
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
++|.....||.|+||.||+|+. .+|+.||||.
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~ 88 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELLG 88 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECCC
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeCC
Confidence 4677778899999999999996 5888999995
Q ss_pred -----------------------------------------cccccceEecCCcc-----EEEeecCCccccCCCCCc--
Q 046589 625 -----------------------------------------DIKASNILLNEDFD-----AKVLDFGLARLISDCKSH-- 656 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~-----~kl~dfgl~~~~~~~~~~-- 656 (729)
|+||+||+++.++. +|++|||+++........
T Consensus 89 ~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~ 168 (330)
T 2izr_A 89 PSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKH 168 (330)
T ss_dssp CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCB
T ss_pred CCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCcc
Confidence 99999999998887 999999999875432211
Q ss_pred ----ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-Ccc-------------------------
Q 046589 657 ----ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP-KFE------------------------- 706 (729)
Q Consensus 657 ----~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~-~~~------------------------- 706 (729)
......+|..|+|||...+..++.++|||||||++|||+||+.|+.. ...
T Consensus 169 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 248 (330)
T 2izr_A 169 IPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENF 248 (330)
T ss_dssp CCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTTC
T ss_pred ccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhccC
Confidence 11345788999999998888899999999999999999999999863 100
Q ss_pred --hHHHHhhcccCCCCCCCCcccc
Q 046589 707 --DKDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 707 --~~~l~~~c~~~~p~~Rp~~~~v 728 (729)
-.+++..||+.+|.+||++++|
T Consensus 249 p~~~~li~~~l~~~p~~RP~~~~l 272 (330)
T 2izr_A 249 PEMATYLRYVRRLDFFEKPDYDYL 272 (330)
T ss_dssp HHHHHHHHHHHHCCTTCCCCHHHH
T ss_pred hHHHHHHHHHHhCCCCCCCCHHHH
Confidence 0168899999999999999886
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-19 Score=189.95 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=86.2
Q ss_pred cccccceEecC--CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNE--DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~--~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++. ++.+|++|||+++..... .......++++|+|||......++.++||||+||++|||+||+.|+.
T Consensus 127 Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~ 204 (321)
T 1tki_A 127 DIRPENIIYQTRRSSTIKIIEFGQARQLKPG--DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFL 204 (321)
T ss_dssp CCCGGGEEESSSSCCCEEECCCTTCEECCTT--CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred CCCHHHEEEccCCCCCEEEEECCCCeECCCC--CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence 99999999997 789999999999876532 22344578899999998877778999999999999999999999986
Q ss_pred CCc---------------ch----------HHHHhhcccCCCCCCCCccccC
Q 046589 703 PKF---------------ED----------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~---------------~~----------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..- .. .+++..|+..+|++|||++|++
T Consensus 205 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l 256 (321)
T 1tki_A 205 AETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEAL 256 (321)
T ss_dssp CSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHh
Confidence 311 10 1799999999999999999863
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-19 Score=191.81 Aligned_cols=135 Identities=21% Similarity=0.341 Sum_probs=104.2
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+.|.....||+|+||.||+|+.. +++.||||.
T Consensus 53 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~ 132 (349)
T 2w4o_A 53 DFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTG 132 (349)
T ss_dssp GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred CcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeCCC
Confidence 45677788999999999999986 678899986
Q ss_pred ----------------------------------------cccccceEecC---CccEEEeecCCccccCCCCCcceecc
Q 046589 625 ----------------------------------------DIKASNILLNE---DFDAKVLDFGLARLISDCKSHISTDV 661 (729)
Q Consensus 625 ----------------------------------------dlk~~nill~~---~~~~kl~dfgl~~~~~~~~~~~~~~~ 661 (729)
|+||+||+++. ++.+|++|||+++..... ......
T Consensus 133 ~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~~ 210 (349)
T 2w4o_A 133 GELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQ--VLMKTV 210 (349)
T ss_dssp CBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC----------------
T ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCcc--cccccc
Confidence 99999999975 889999999999875431 122345
Q ss_pred cccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCc---------------------c-----hHHHHhhcc
Q 046589 662 ASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKF---------------------E-----DKDIVVGCV 715 (729)
Q Consensus 662 ~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~---------------------~-----~~~l~~~c~ 715 (729)
.++.+|+|||...+..++.++|||||||++|||+||+.|+...- . -.+++.+|+
T Consensus 211 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L 290 (349)
T 2w4o_A 211 CGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLI 290 (349)
T ss_dssp --CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTS
T ss_pred cCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHc
Confidence 67899999999888889999999999999999999999985210 0 017999999
Q ss_pred cCCCCCCCCccccC
Q 046589 716 SDNPIAKPGMLRVQ 729 (729)
Q Consensus 716 ~~~p~~Rp~~~~v~ 729 (729)
+.+|++|||+++++
T Consensus 291 ~~dP~~Rpt~~e~l 304 (349)
T 2w4o_A 291 VLDPKKRLTTFQAL 304 (349)
T ss_dssp CSSGGGSCCHHHHH
T ss_pred cCChhhCcCHHHHh
Confidence 99999999998863
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-19 Score=191.40 Aligned_cols=103 Identities=22% Similarity=0.338 Sum_probs=85.8
Q ss_pred cccccceEecCCc----cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDF----DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~----~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++ .+|++|||+++..... .......+|++|+|||......++.++||||+||++|||++|+.|
T Consensus 140 Dlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~P 217 (361)
T 2yab_A 140 DLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDG--VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 217 (361)
T ss_dssp CCSGGGEEESCTTSSSCCEEECCCSSCEECCTT--CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCS
T ss_pred CCCHHHEEEeCCCCCccCEEEEecCCceEcCCC--CccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCC
Confidence 9999999998776 7999999999876532 122345788999999998888899999999999999999999999
Q ss_pred CCCC---------------cch----------HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPK---------------FED----------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~---------------~~~----------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+... +.. .+++..|+..+|++|||++|++
T Consensus 218 f~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l 271 (361)
T 2yab_A 218 FLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEAL 271 (361)
T ss_dssp SCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence 8631 110 1799999999999999999863
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-19 Score=198.57 Aligned_cols=100 Identities=10% Similarity=0.097 Sum_probs=83.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCcccc----------CCCCCCchhhHHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYG----------RARKANERDNIYRFGVVLLEL 694 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~----------~~~~~~~~~Dv~s~G~vl~el 694 (729)
|+||+||+++.++.+||+|||+++.... ......+ .+|+|||.. ....++.++|||||||++|||
T Consensus 236 DiKp~NILl~~~~~~kL~DFG~a~~~~~----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~el 310 (413)
T 3dzo_A 236 YLRPVDIVLDQRGGVFLTGFEHLVRDGA----SAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWI 310 (413)
T ss_dssp CCCGGGEEECTTCCEEECCGGGCEETTE----EECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHH
T ss_pred CcccceEEEecCCeEEEEeccceeecCC----ccccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999886432 1334455 899999987 556688999999999999999
Q ss_pred HhCCCCCCCCcc---------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 695 VIRKQPTGPKFE---------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 695 ~tg~~p~~~~~~---------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+||+.|+...-. +. +++..|+..+|++||++.+++
T Consensus 311 ltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 311 WCADLPNTDDAALGGSEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp HHSSCCCCTTGGGSCSGGGGSSCCCCCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred HHCCCCCCCcchhhhHHHHHhhcccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 999999873111 11 899999999999999998764
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-19 Score=196.74 Aligned_cols=104 Identities=23% Similarity=0.346 Sum_probs=86.3
Q ss_pred cccccceEec---CCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLN---EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~---~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++ .++.+|++|||+++...... .......+|++|+|||......++.++||||+||++|||++|+.|+
T Consensus 135 DlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~-~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf 213 (444)
T 3soa_A 135 NLKPENLLLASKLKGAAVKLADFGLAIEVEGEQ-QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPF 213 (444)
T ss_dssp CCSSTTEEESBSSTTCCEEECCCSSCBCCCTTC-CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred CCCHHHEEEeccCCCCcEEEccCceeEEecCCC-ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCC
Confidence 9999999998 46789999999998765322 2234567899999999988888999999999999999999999997
Q ss_pred CC--------------------Ccc---h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP--------------------KFE---D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~--------------------~~~---~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .|. + .+++..|++.+|++|||++|++
T Consensus 214 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L 266 (444)
T 3soa_A 214 WDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEAL 266 (444)
T ss_dssp CCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred CCccHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCCCHHHHh
Confidence 52 111 1 1899999999999999999863
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-19 Score=191.59 Aligned_cols=100 Identities=22% Similarity=0.345 Sum_probs=83.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++++|++|||+++...... .......||..|+|||......++.++||||+||++|||++|+.|+...
T Consensus 146 Dlkp~NIll~~~g~vkL~DFG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~ 224 (353)
T 2i0e_A 146 DLKLDNVMLDSEGHIKIADFGMCKENIWDG-VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE 224 (353)
T ss_dssp CCCGGGEEECTTSCEEECCCTTCBCCCCTT-CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cCCHHHEEEcCCCcEEEEeCCcccccccCC-cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC
Confidence 999999999999999999999998643211 2233457899999999988888999999999999999999999998731
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCCCc
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp~~ 725 (729)
-. . .+++..|+..+|++||++
T Consensus 225 ~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 225 DEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGC 266 (353)
T ss_dssp SHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTSCTTC
T ss_pred CHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 11 1 179999999999999975
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-19 Score=186.27 Aligned_cols=103 Identities=25% Similarity=0.437 Sum_probs=75.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCcccc----CCCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYG----RARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~----~~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++.+|++|||+++...... ......++.+|+|||.. ....++.++||||+||++|||+||+.|
T Consensus 135 dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p 212 (290)
T 3fme_A 135 DVKPSNVLINALGQVKMCDFGISGYLVDDV--AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFP 212 (290)
T ss_dssp CCSGGGCEECTTCCEEBCCC-----------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCS
T ss_pred CCCHHHEEECCCCCEEEeecCCcccccccc--cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999998754321 12234678899999984 456789999999999999999999999
Q ss_pred CCCC----------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 701 TGPK----------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~----------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+... +.+. +++..|++.+|++|||++|++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l 265 (290)
T 3fme_A 213 YDSWGTPFQQLKQVVEEPSPQLPADKFSAEFVDFTSQCLKKNSKERPTYPELM 265 (290)
T ss_dssp SCCCSCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred ccccCchHHHHHHHhccCCCCcccccCCHHHHHHHHHHhhcChhhCcCHHHHH
Confidence 8631 0011 799999999999999999875
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-19 Score=194.83 Aligned_cols=135 Identities=23% Similarity=0.290 Sum_probs=111.5
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|.....||+|+||+||+|+.. +|+.||||.
T Consensus 61 ~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lVm 140 (412)
T 2vd5_A 61 DDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVM 140 (412)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEE
T ss_pred hhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence 57778888999999999999985 789999995
Q ss_pred ----------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcce
Q 046589 625 ----------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS 658 (729)
Q Consensus 625 ----------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~ 658 (729)
|+||+||+++.++++|++|||+++..........
T Consensus 141 E~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~~~ 220 (412)
T 2vd5_A 141 EYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRS 220 (412)
T ss_dssp CCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEEC
T ss_pred cCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhheeccCCCcccc
Confidence 9999999999999999999999987654332222
Q ss_pred ecccccccccCccccC-------CCCCCchhhHHHHHHHHHHHHhCCCCCCCCc-----------------c-------h
Q 046589 659 TDVASAISYVPPEYGR-------ARKANERDNIYRFGVVLLELVIRKQPTGPKF-----------------E-------D 707 (729)
Q Consensus 659 ~~~~~~~~y~ape~~~-------~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~-----------------~-------~ 707 (729)
....||..|+|||... ...++.++||||+||++|||+||+.|+...- . +
T Consensus 221 ~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~ 300 (412)
T 2vd5_A 221 LVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLVDEGVPE 300 (412)
T ss_dssp SSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC----CCCH
T ss_pred ceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCcCCCccccCCCH
Confidence 3457899999999765 3568999999999999999999999986310 0 0
Q ss_pred --HHHHhhcccCCCCCC---CCcccc
Q 046589 708 --KDIVVGCVSDNPIAK---PGMLRV 728 (729)
Q Consensus 708 --~~l~~~c~~~~p~~R---p~~~~v 728 (729)
.+++.+|+. +|++| |+++|+
T Consensus 301 ~~~dli~~lL~-~p~~Rlgr~~~~ei 325 (412)
T 2vd5_A 301 EARDFIQRLLC-PPETRLGRGGAGDF 325 (412)
T ss_dssp HHHHHHHTTSS-CGGGCTTTTTHHHH
T ss_pred HHHHHHHHHcC-ChhhcCCCCCHHHH
Confidence 179999999 99988 577775
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-19 Score=183.41 Aligned_cols=135 Identities=24% Similarity=0.358 Sum_probs=112.2
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|...+.+|.|+||.||+|... +|+.||||.
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 85 (284)
T 3kk8_A 6 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFD 85 (284)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEe
Confidence 46677788999999999999875 788999995
Q ss_pred --------------------------------------------cccccceEecCCcc---EEEeecCCccccCCCCCcc
Q 046589 625 --------------------------------------------DIKASNILLNEDFD---AKVLDFGLARLISDCKSHI 657 (729)
Q Consensus 625 --------------------------------------------dlk~~nill~~~~~---~kl~dfgl~~~~~~~~~~~ 657 (729)
|+||+||+++.++. +|++|||++...... ..
T Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~--~~ 163 (284)
T 3kk8_A 86 LVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS--EA 163 (284)
T ss_dssp CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSS--CB
T ss_pred cCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccC--cc
Confidence 99999999986554 999999999775532 22
Q ss_pred eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--------------------c---ch--HHHHh
Q 046589 658 STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK--------------------F---ED--KDIVV 712 (729)
Q Consensus 658 ~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~--------------------~---~~--~~l~~ 712 (729)
.....++.+|+|||......++.++||||+||++|||++|+.|+... | .+ .+++.
T Consensus 164 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 243 (284)
T 3kk8_A 164 WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLID 243 (284)
T ss_dssp CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHH
T ss_pred ccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCchhhcccCHHHHHHHH
Confidence 23457889999999988888999999999999999999999997521 0 01 17999
Q ss_pred hcccCCCCCCCCccccC
Q 046589 713 GCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 713 ~c~~~~p~~Rp~~~~v~ 729 (729)
.|++.+|++|||++|++
T Consensus 244 ~~l~~dp~~Rps~~~~l 260 (284)
T 3kk8_A 244 SMLTVNPKKRITADQAL 260 (284)
T ss_dssp HHSCSSTTTSCCHHHHT
T ss_pred HHcccChhhCCCHHHHh
Confidence 99999999999999875
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-19 Score=204.76 Aligned_cols=132 Identities=23% Similarity=0.338 Sum_probs=112.5
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|.....||+|+||.||+|+.. +++.||||.
T Consensus 341 ~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV 420 (674)
T 3pfq_A 341 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFV 420 (674)
T ss_dssp TTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEE
T ss_pred cceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEE
Confidence 46777788999999999999985 778899995
Q ss_pred ----------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcce
Q 046589 625 ----------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS 658 (729)
Q Consensus 625 ----------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~ 658 (729)
||||+||+++.++++||+|||+|+...... ...
T Consensus 421 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~-~~~ 499 (674)
T 3pfq_A 421 MEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG-VTT 499 (674)
T ss_dssp EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTT-CCB
T ss_pred EeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeeccccCC-ccc
Confidence 999999999999999999999998643222 223
Q ss_pred ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcc-------------------h--HHHHhhcccC
Q 046589 659 TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFE-------------------D--KDIVVGCVSD 717 (729)
Q Consensus 659 ~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~-------------------~--~~l~~~c~~~ 717 (729)
....||++|+|||......++.++|||||||++|||+||+.|+...-. . .+++..|+..
T Consensus 500 ~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~ 579 (674)
T 3pfq_A 500 KTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVAICKGLMTK 579 (674)
T ss_dssp CCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSCCCCCTTSCHHHHHHHHHHSCS
T ss_pred ccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHHHHHccC
Confidence 456789999999998888999999999999999999999999874211 1 1899999999
Q ss_pred CCCCCCCc
Q 046589 718 NPIAKPGM 725 (729)
Q Consensus 718 ~p~~Rp~~ 725 (729)
+|++||++
T Consensus 580 dP~~R~~~ 587 (674)
T 3pfq_A 580 HPGKRLGC 587 (674)
T ss_dssp SSTTCTTC
T ss_pred CHHHCCCC
Confidence 99999998
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-19 Score=197.87 Aligned_cols=103 Identities=20% Similarity=0.327 Sum_probs=85.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+||+|||+|+...... .......+|.+|+|||......++.++||||+||++|||+||+.|+...
T Consensus 274 Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~ 352 (446)
T 4ejn_A 274 DLKLENLMLDKDGHIKITDFGLCKEGIKDG-ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ 352 (446)
T ss_dssp CCCGGGEEECSSSCEEECCCCCCCTTCC------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred CCCHHHEEECCCCCEEEccCCCceeccCCC-cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC
Confidence 999999999999999999999998644322 2233567899999999988888999999999999999999999998631
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCC-----Ccccc
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKP-----GMLRV 728 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp-----~~~~v 728 (729)
-. + .+++..|++.+|++|| +++|+
T Consensus 353 ~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~el 402 (446)
T 4ejn_A 353 DHEKLFELILMEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEI 402 (446)
T ss_dssp SHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHH
T ss_pred CHHHHHHHHHhCCCCCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHH
Confidence 11 1 1799999999999999 88776
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-19 Score=188.04 Aligned_cols=136 Identities=25% Similarity=0.389 Sum_probs=107.8
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+.|.....||+|+||.||+|+.. +|+.||||.
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 104 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE 104 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence 45667788999999999999985 688999995
Q ss_pred --------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceec
Q 046589 625 --------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTD 660 (729)
Q Consensus 625 --------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~ 660 (729)
|+||+||+++.++.+|++|||+++...... .....
T Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~ 183 (331)
T 4aaa_A 105 FVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG-EVYDD 183 (331)
T ss_dssp CCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC-------------
T ss_pred cCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCc-cccCC
Confidence 999999999999999999999997654321 22234
Q ss_pred ccccccccCccccCCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCc----------------------------------
Q 046589 661 VASAISYVPPEYGRAR-KANERDNIYRFGVVLLELVIRKQPTGPKF---------------------------------- 705 (729)
Q Consensus 661 ~~~~~~y~ape~~~~~-~~~~~~Dv~s~G~vl~el~tg~~p~~~~~---------------------------------- 705 (729)
..++.+|+|||...+. .++.++||||+||++|||+||+.|+...-
T Consensus 184 ~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (331)
T 4aaa_A 184 EVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRL 263 (331)
T ss_dssp CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCC
T ss_pred CcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccC
Confidence 5678899999987654 67899999999999999999999985310
Q ss_pred ----------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 706 ----------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 706 ----------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.+. +++.+|++.+|++|||++|++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell 305 (331)
T 4aaa_A 264 PEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELL 305 (331)
T ss_dssp CCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGG
T ss_pred ccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHh
Confidence 011 789999999999999999985
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-19 Score=185.92 Aligned_cols=100 Identities=24% Similarity=0.457 Sum_probs=84.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++.... ......+|..|+|||......++.++||||+||++|||++|+.|+...
T Consensus 131 Dlkp~NIll~~~g~~kL~Dfg~a~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 206 (318)
T 1fot_A 131 DLKPENILLDKNGHIKITDFGFAKYVPD----VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS 206 (318)
T ss_dssp CCCGGGEEECTTSCEEECCCSSCEECSS----CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred CCChheEEEcCCCCEEEeecCcceecCC----ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence 9999999999999999999999987542 123457889999999988888999999999999999999999998631
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCC-----Ccccc
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKP-----GMLRV 728 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp-----~~~~v 728 (729)
-. + .+++.+|+..+|++|| +++++
T Consensus 207 ~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i 256 (318)
T 1fot_A 207 NTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDV 256 (318)
T ss_dssp SHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHH
T ss_pred CHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHH
Confidence 10 1 1799999999999999 66665
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-19 Score=191.13 Aligned_cols=103 Identities=23% Similarity=0.358 Sum_probs=85.1
Q ss_pred cccccceEecCC---ccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNED---FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~---~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.+ +.+|++|||+++..... .......++.+|+|||......++.++||||+||++|||+||+.|+
T Consensus 153 Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf 230 (362)
T 2bdw_A 153 NLKPENLLLASKAKGAAVKLADFGLAIEVNDS--EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPF 230 (362)
T ss_dssp CCSGGGEEESCSSTTCCEEECCCTTCBCCTTC--CSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cCchHHEEEecCCCCCCEEEeecCcceEecCC--cccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCC
Confidence 999999999854 46999999999876532 2233457889999999988888999999999999999999999997
Q ss_pred CCC--------------------cc---h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPK--------------------FE---D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~--------------------~~---~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... |. + .+++..|+..+|++|||+++++
T Consensus 231 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 283 (362)
T 2bdw_A 231 WDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQAL 283 (362)
T ss_dssp CCSSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHT
T ss_pred CCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence 521 11 1 1799999999999999999874
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=185.63 Aligned_cols=175 Identities=26% Similarity=0.224 Sum_probs=151.4
Q ss_pred EEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCccccc-CCCCCCEEeccCCcCcccCCccccCCCCCcEEEeecc
Q 046589 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVS-NLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187 (729)
Q Consensus 109 ~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N 187 (729)
.++++++.++. +|..+. +.+++|+|++|++++..+..|. ++++|++|+|++|+|++..|..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 57888888874 666544 4689999999999999888887 9999999999999999888888999999999999999
Q ss_pred CCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhh---ccCCCCCEEEcccccccc
Q 046589 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLF---TNLQSLSYLDVSNNLLSG 264 (729)
Q Consensus 188 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~---~~l~~L~~L~Ls~N~l~~ 264 (729)
++++..+..|.++++|++|+|++|+++...|..|..+++|++|+|++|.++ .++...| ..+++|++|+|++|+++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 999888888999999999999999999888899999999999999999998 5776666 679999999999999996
Q ss_pred cCCccccCCCc--CCeecccccccc
Q 046589 265 NIPPEISHLKK--LSDHYLGINQFT 287 (729)
Q Consensus 265 ~~p~~l~~l~~--L~~l~l~~n~l~ 287 (729)
..+..+..++. ++.+++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 66567777776 377888888875
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-19 Score=197.12 Aligned_cols=136 Identities=27% Similarity=0.395 Sum_probs=114.0
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
+.|.....||.|+||.||+|+. .+++.||||.
T Consensus 7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~g 86 (483)
T 3sv0_A 7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLLG 86 (483)
T ss_dssp TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECCC
T ss_pred CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECCC
Confidence 4677788899999999999996 5788999995
Q ss_pred -----------------------------------------cccccceEe---cCCccEEEeecCCccccCCCCCc----
Q 046589 625 -----------------------------------------DIKASNILL---NEDFDAKVLDFGLARLISDCKSH---- 656 (729)
Q Consensus 625 -----------------------------------------dlk~~nill---~~~~~~kl~dfgl~~~~~~~~~~---- 656 (729)
||||+||++ +.++.+||+|||+++........
T Consensus 87 ~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~ 166 (483)
T 3sv0_A 87 PSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIP 166 (483)
T ss_dssp CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCC
T ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccccc
Confidence 999999999 58899999999999876532221
Q ss_pred --ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-Cc-c-------------------------h
Q 046589 657 --ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP-KF-E-------------------------D 707 (729)
Q Consensus 657 --~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~-~~-~-------------------------~ 707 (729)
......++..|+|||......++.++|||||||++|||++|+.|+.. .. . +
T Consensus 167 ~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~ 246 (483)
T 3sv0_A 167 YRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPT 246 (483)
T ss_dssp CCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCH
T ss_pred cccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcH
Confidence 11245788999999998888899999999999999999999999864 10 0 0
Q ss_pred --HHHHhhcccCCCCCCCCcccc
Q 046589 708 --KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 708 --~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.+++..||+.+|++||++++|
T Consensus 247 ~l~~li~~cl~~dP~~RPs~~el 269 (483)
T 3sv0_A 247 EFASYFHYCRSLRFDDKPDYSYL 269 (483)
T ss_dssp HHHHHHHHHHTCCTTCCCCHHHH
T ss_pred HHHHHHHHHhcCChhhCcCHHHH
Confidence 078999999999999999986
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=169.55 Aligned_cols=153 Identities=18% Similarity=0.182 Sum_probs=120.2
Q ss_pred EEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCc-ccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeecc
Q 046589 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPS-PQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187 (729)
Q Consensus 109 ~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N 187 (729)
.++++++.++. +|..+. ..+++|+|++|.+++..+ ..|..+++|++|+|++|+|++..|..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 57777777763 665443 356788888888887754 45788888888888888888777778888888888888888
Q ss_pred CCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccccc
Q 046589 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGN 265 (729)
Q Consensus 188 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 265 (729)
++++..|..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.+++ +++..|..+++|++|++++|.+.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcCCcCC
Confidence 8887777778888888888888888887778888888888888888888874 4446778888888888888887754
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-19 Score=192.47 Aligned_cols=104 Identities=23% Similarity=0.380 Sum_probs=82.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC--CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA--RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~--~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+||+|||+++..............+|.+|+|||.... ..++.++|||||||++|||+||+.|+.
T Consensus 184 Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~ 263 (355)
T 1vzo_A 184 DIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFT 263 (355)
T ss_dssp CCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTS
T ss_pred CCCHHHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCc
Confidence 999999999999999999999998754322223334578999999998764 457889999999999999999999985
Q ss_pred CCc-----------------------ch--HHHHhhcccCCCCCCC-----Ccccc
Q 046589 703 PKF-----------------------ED--KDIVVGCVSDNPIAKP-----GMLRV 728 (729)
Q Consensus 703 ~~~-----------------------~~--~~l~~~c~~~~p~~Rp-----~~~~v 728 (729)
... .. .+++.+|+..+|++|| +++++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~el 319 (355)
T 1vzo_A 264 VDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEI 319 (355)
T ss_dssp CTTSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHH
T ss_pred cCCccchHHHHHHHHhccCCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHH
Confidence 210 00 1799999999999999 77765
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.6e-19 Score=195.89 Aligned_cols=105 Identities=30% Similarity=0.444 Sum_probs=76.9
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+.|.....||.|+||.||+|... +|+.||||+
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 132 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL 132 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence 56778889999999999999875 788999995
Q ss_pred ------------------------------------------------cccccceEecCCccEEEeecCCccccCCCCC-
Q 046589 625 ------------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKS- 655 (729)
Q Consensus 625 ------------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~- 655 (729)
|+||+|||++.++.+||+|||+|+.......
T Consensus 133 ~lv~e~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~ 212 (458)
T 3rp9_A 133 YVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENG 212 (458)
T ss_dssp EEEECCCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTC
T ss_pred EEEEeccccchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhccCcccc
Confidence 9999999999999999999999987642111
Q ss_pred -------------------------cceecccccccccCcccc-CCCCCCchhhHHHHHHHHHHHHhC
Q 046589 656 -------------------------HISTDVASAISYVPPEYG-RARKANERDNIYRFGVVLLELVIR 697 (729)
Q Consensus 656 -------------------------~~~~~~~~~~~y~ape~~-~~~~~~~~~Dv~s~G~vl~el~tg 697 (729)
...+...+|.+|+|||.. ....++.++||||+||++|||+||
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 213 NSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp CCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred ccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 112345779999999964 456789999999999999999994
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-19 Score=203.00 Aligned_cols=105 Identities=26% Similarity=0.459 Sum_probs=85.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.+||+|||+++..............++..|+|||......++.++|||||||++|||+| |+.|+..
T Consensus 343 Dlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~ 422 (495)
T 1opk_A 343 NLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG 422 (495)
T ss_dssp CCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred CCChhhEEECCCCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999998765322222223455678999998877788999999999999999999 8888752
Q ss_pred -Ccc-------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 704 -KFE-------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~~-------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... +. +++..||+.+|++||||++|+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~ 470 (495)
T 1opk_A 423 IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIH 470 (495)
T ss_dssp CCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHH
Confidence 100 11 799999999999999999873
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-19 Score=183.94 Aligned_cols=102 Identities=27% Similarity=0.548 Sum_probs=82.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.++++|||++...... ......++..|+|||......++.++||||+||++|||++|+.|+...
T Consensus 134 dlkp~Nili~~~~~~~l~Dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 210 (279)
T 3fdn_A 134 DIKPENLLLGSAGELKIADFGWSVHAPSS---RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN 210 (279)
T ss_dssp CCCGGGEEECTTSCEEECSCCEESCC-----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred cCChHhEEEcCCCCEEEEeccccccCCcc---cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCC
Confidence 99999999999999999999988654321 123456788999999888888899999999999999999999998731
Q ss_pred -cc------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 705 -FE------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 -~~------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. + .+++..|++.+|++|||++|++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l 256 (279)
T 3fdn_A 211 TYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVL 256 (279)
T ss_dssp SHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred cHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHh
Confidence 11 1 1799999999999999999874
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-19 Score=186.58 Aligned_cols=104 Identities=23% Similarity=0.337 Sum_probs=79.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++...... .......++.+|+|||...+ ..++.++||||+||++|||+||+.|+..
T Consensus 127 dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~ 205 (311)
T 4agu_A 127 DVKPENILITKHSVIKLCDFGFARLLTGPS-DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPG 205 (311)
T ss_dssp CCSGGGEEECTTSCEEECCCTTCEECC-------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CCChhhEEEcCCCCEEEeeCCCchhccCcc-cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999998765322 12234567889999997754 6679999999999999999999999753
Q ss_pred Ccc----------------------------------------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KFE----------------------------------------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~----------------------------------------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.-. -.+++..|++.+|++|||++|++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 283 (311)
T 4agu_A 206 KSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLL 283 (311)
T ss_dssp SSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHH
T ss_pred CCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHh
Confidence 100 01599999999999999999874
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.8e-19 Score=189.20 Aligned_cols=103 Identities=21% Similarity=0.267 Sum_probs=84.4
Q ss_pred cccccceEecC-CccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNE-DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++. ++.+||+|||+++...... ......++.+|+|||...+ ..++.++|||||||++|||+||+.|+.
T Consensus 156 Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~ 233 (360)
T 3e3p_A 156 DIKPHNVLVNEADGTLKLCDFGSAKKLSPSE--PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFR 233 (360)
T ss_dssp CCCGGGEEEETTTTEEEECCCTTCBCCCTTS--CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred cCCHHHEEEeCCCCcEEEeeCCCceecCCCC--CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcC
Confidence 99999999996 8999999999998765322 2234567889999997754 458999999999999999999999986
Q ss_pred CCc----------------------------------------c-------------hHHHHhhcccCCCCCCCCccccC
Q 046589 703 PKF----------------------------------------E-------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~----------------------------------------~-------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..- . -.+++..|++.+|++|||++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l 313 (360)
T 3e3p_A 234 GDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEAL 313 (360)
T ss_dssp CSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred CCChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHh
Confidence 310 0 01699999999999999999875
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-19 Score=187.93 Aligned_cols=100 Identities=18% Similarity=0.351 Sum_probs=83.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++++|++|||+++...... .......+|..|+|||......++.++||||+||++|||+||+.|+...
T Consensus 135 Dlkp~NIll~~~g~~kL~DFG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 213 (345)
T 3a8x_A 135 DLKLDNVLLDSEGHIKLTDYGMCKEGLRPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV 213 (345)
T ss_dssp CCCGGGEEECTTSCEEECCGGGCBCSCCTT-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTT
T ss_pred CCCHHHEEECCCCCEEEEeccccccccCCC-CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCc
Confidence 999999999999999999999998643211 2233567899999999988888999999999999999999999998520
Q ss_pred ------------------------c----ch--HHHHhhcccCCCCCCCCc
Q 046589 705 ------------------------F----ED--KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 705 ------------------------~----~~--~~l~~~c~~~~p~~Rp~~ 725 (729)
+ .. .+++.+|+..+|++||++
T Consensus 214 ~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 214 GSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp TC-------CHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred ccccccccccHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 0 00 179999999999999996
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-19 Score=182.79 Aligned_cols=104 Identities=22% Similarity=0.421 Sum_probs=67.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||++........ ......++..|+|||......++.++||||+||++|||+||+.|+...
T Consensus 137 dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 215 (278)
T 3cok_A 137 DLTLSNLLLTRNMNIKIADFGLATQLKMPHE-KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTD 215 (278)
T ss_dssp SCCGGGEEECTTCCEEECCCTTCEECC-----------------------------CTHHHHHHHHHHHHHHSSCSSCCC
T ss_pred CCCHHHEEEcCCCCEEEEeecceeeccCCCC-cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCh
Confidence 9999999999999999999999987542211 122346788999999888788899999999999999999999997631
Q ss_pred -cc------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 705 -FE------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 -~~------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . .+++.+|+..+|++|||+++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l 261 (278)
T 3cok_A 216 TVKNTLNKVVLADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVL 261 (278)
T ss_dssp SCC-----CCSSCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHT
T ss_pred hHHHHHHHHhhcccCCccccCHHHHHHHHHHcccCHhhCCCHHHHh
Confidence 00 1 1799999999999999999875
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-19 Score=185.84 Aligned_cols=136 Identities=27% Similarity=0.469 Sum_probs=112.0
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
+.+.....+|+|+||.||+|...+++.||||.
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~ 92 (279)
T 1qpc_A 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENG 92 (279)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTC
T ss_pred HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEcCCCcEEEEecCCCC
Confidence 45666778999999999999998888999995
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|+||+||+++.++.+|++|||+++..............+
T Consensus 93 ~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~ 172 (279)
T 1qpc_A 93 SLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKF 172 (279)
T ss_dssp BHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCC
T ss_pred CHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCCCC
Confidence 999999999999999999999998765322222223455
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCcc--------------------h--HHHHhhcccCCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGPKFE--------------------D--KDIVVGCVSDNPI 720 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~~~~--------------------~--~~l~~~c~~~~p~ 720 (729)
+..|+|||......++.++||||+||++|||+| |+.|+...-. + .+++..|++.+|+
T Consensus 173 ~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~ 252 (279)
T 1qpc_A 173 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPE 252 (279)
T ss_dssp CTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred ccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcccCCCCcccccHHHHHHHHHHhccChh
Confidence 678999998877778999999999999999999 8888753100 1 1799999999999
Q ss_pred CCCCcccc
Q 046589 721 AKPGMLRV 728 (729)
Q Consensus 721 ~Rp~~~~v 728 (729)
+|||++++
T Consensus 253 ~Rps~~~l 260 (279)
T 1qpc_A 253 DRPTFDYL 260 (279)
T ss_dssp GSCCHHHH
T ss_pred hCCCHHHH
Confidence 99999886
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=6.8e-19 Score=187.68 Aligned_cols=132 Identities=21% Similarity=0.337 Sum_probs=112.4
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|.....||.|+||.||+|+.. +|+.||||.
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 46777788999999999999985 788999995
Q ss_pred ---------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCccee
Q 046589 625 ---------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST 659 (729)
Q Consensus 625 ---------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~ 659 (729)
|+||+||+++.++.+|++|||+++..... ..
T Consensus 121 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~----~~ 196 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR----TW 196 (350)
T ss_dssp ECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC----BC
T ss_pred cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccceeccCC----cc
Confidence 99999999999999999999999875431 22
Q ss_pred cccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCc-------------------ch--HHHHhhcccCC
Q 046589 660 DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKF-------------------ED--KDIVVGCVSDN 718 (729)
Q Consensus 660 ~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~-------------------~~--~~l~~~c~~~~ 718 (729)
...+|..|+|||......++.++||||+||++|||++|+.|+...- .. .+++.+|++.+
T Consensus 197 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~d 276 (350)
T 1rdq_E 197 TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVD 276 (350)
T ss_dssp CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSCSC
T ss_pred cccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhcC
Confidence 4578899999998888889999999999999999999999986311 11 18999999999
Q ss_pred CCCCCC-----cccc
Q 046589 719 PIAKPG-----MLRV 728 (729)
Q Consensus 719 p~~Rp~-----~~~v 728 (729)
|++||+ ++++
T Consensus 277 p~~R~~~~~~~~~ei 291 (350)
T 1rdq_E 277 LTKRFGNLKNGVNDI 291 (350)
T ss_dssp TTTCTTSSTTTTHHH
T ss_pred HHhccCCccCCHHHH
Confidence 999998 6654
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.1e-19 Score=181.39 Aligned_cols=101 Identities=22% Similarity=0.446 Sum_probs=82.4
Q ss_pred cccccceEecCCcc-----EEEeecCCccccCCCCCcceecccccccccCcccc--CCCCCCchhhHHHHHHHHHHHHhC
Q 046589 625 DIKASNILLNEDFD-----AKVLDFGLARLISDCKSHISTDVASAISYVPPEYG--RARKANERDNIYRFGVVLLELVIR 697 (729)
Q Consensus 625 dlk~~nill~~~~~-----~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~--~~~~~~~~~Dv~s~G~vl~el~tg 697 (729)
|+||+||+++.++. +|++|||+++.... ......++..|+|||.. ....++.++||||+||++|||+||
T Consensus 149 dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g 224 (287)
T 4f0f_A 149 DLRSPNIFLQSLDENAPVCAKVADFGLSQQSVH----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTG 224 (287)
T ss_dssp CCSGGGEEESCCCTTCSCCEEECCCTTCBCCSS----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHS
T ss_pred CCCcceEEEeccCCCCceeEEeCCCCccccccc----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcC
Confidence 99999999987766 99999999975432 23445788999999987 345678999999999999999999
Q ss_pred CCCCCC-Ccc----------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 698 KQPTGP-KFE----------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 698 ~~p~~~-~~~----------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+.|+.. ... + .+++..||+.+|++|||+++++
T Consensus 225 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll 281 (287)
T 4f0f_A 225 EGPFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIV 281 (287)
T ss_dssp SCTTTTCCCCHHHHHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCCccccccHHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHH
Confidence 999863 100 0 1799999999999999999873
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-19 Score=192.95 Aligned_cols=103 Identities=20% Similarity=0.330 Sum_probs=81.0
Q ss_pred cccccceEecC---CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNE---DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++. ++.+||+|||+++..... .......+|.+|+|||......++.++|||||||++|||+||+.|+
T Consensus 186 Dlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf 263 (400)
T 1nxk_A 186 DVKPENLLYTSKRPNAILKLTDFGFAKETTSH--NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPF 263 (400)
T ss_dssp CCCGGGEEESSSSTTCCEEECCCTTCEECC-------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSC
T ss_pred CcCcceEEEecCCCCccEEEEecccccccCCC--CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCC
Confidence 99999999997 789999999999875431 2223457789999999988888999999999999999999999998
Q ss_pred CCC------------------------cc---h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPK------------------------FE---D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~------------------------~~---~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... |. + .+++..|+..+|++|||+++++
T Consensus 264 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil 320 (400)
T 1nxk_A 264 YSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFM 320 (400)
T ss_dssp CCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHH
T ss_pred CCCccccccHHHHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence 521 00 0 1799999999999999999873
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-19 Score=189.14 Aligned_cols=104 Identities=18% Similarity=0.282 Sum_probs=85.2
Q ss_pred cccccceEecCCc---cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDF---DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~---~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++ .+|++|||+++...... .......+|.+|+|||......++.++||||+||++|||+||+.|+
T Consensus 155 Dlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf 233 (351)
T 3c0i_A 155 DVKPHCVLLASKENSAPVKLGGFGVAIQLGESG-LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPF 233 (351)
T ss_dssp CCSGGGEEECSSSTTCCEEECCCTTCEECCTTS-CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cCChHHeEEecCCCCCcEEEecCcceeEecCCC-eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCC
Confidence 9999999998654 49999999998765322 2233457889999999988888999999999999999999999998
Q ss_pred CCC--------------cc--------h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPK--------------FE--------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~--------------~~--------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... +. + .+++.+|+..+|++|||+++++
T Consensus 234 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l 285 (351)
T 3c0i_A 234 YGTKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEAL 285 (351)
T ss_dssp CSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCcHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence 631 00 0 1799999999999999999863
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-19 Score=190.37 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=85.4
Q ss_pred cccccceEe--cCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILL--NEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill--~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||++ +.++.+||+|||+++...... ......++.+|+|||......++.++|||||||++|||+||+.|+.
T Consensus 212 Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~ 289 (373)
T 2x4f_A 212 DLKPENILCVNRDAKQIKIIDFGLARRYKPRE--KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFL 289 (373)
T ss_dssp CCCGGGEEEEETTTTEEEECCCSSCEECCTTC--BCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred cCCHHHEEEecCCCCcEEEEeCCCceecCCcc--ccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCC
Confidence 999999999 567899999999998765322 2234468899999998887888999999999999999999999986
Q ss_pred CC-------------cc----------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PK-------------FE----------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~-------------~~----------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. |. + .+++.+|++.+|++|||++|++
T Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l 341 (373)
T 2x4f_A 290 GDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISASEAL 341 (373)
T ss_dssp CSSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhhCCCHHHHh
Confidence 31 10 1 1799999999999999999863
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-19 Score=195.29 Aligned_cols=103 Identities=23% Similarity=0.422 Sum_probs=85.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..... .......++.+|+|||...+..+ +.++||||+||++|||++|+.|+..
T Consensus 141 DLkp~NIll~~~~~vkL~DFG~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~ 218 (476)
T 2y94_A 141 DLKPENVLLDAHMNAKIADFGLSNMMSDG--EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDD 218 (476)
T ss_dssp CCSGGGEEECTTCCEEECCCSSCEECCTT--CCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred cccHHHEEEecCCCeEEEeccchhhcccc--ccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCC
Confidence 99999999999999999999999876532 22334578899999998876654 6899999999999999999999874
Q ss_pred Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... . .+++..|+..+|++|||+++++
T Consensus 219 ~~~~~~~~~i~~~~~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil 265 (476)
T 2y94_A 219 DHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIR 265 (476)
T ss_dssp SSSHHHHHHHHTTCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCHHHHHHHHhcCCcCCCccCCHHHHHHHHHHcCCCchhCcCHHHHH
Confidence 211 1 1799999999999999999863
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-19 Score=191.07 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=64.1
Q ss_pred cccccceEec--CCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLN--EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~--~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++ .++.+||+|||+++..... .....++.+|+|||...+..++.++|||||||++|||+||+.|+.
T Consensus 184 Dlkp~NIll~~~~~~~~kL~DFG~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~ 259 (382)
T 2vx3_A 184 DLKPENILLCNPKRSAIKIVDFGSSCQLGQR----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFS 259 (382)
T ss_dssp CCSGGGEEESSTTSCCEEECCCTTCEETTCC----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCCcccEEEecCCCCcEEEEeccCceecccc----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999995 5788999999999876431 234567889999999888889999999999999999999999986
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-19 Score=190.50 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=85.3
Q ss_pred cccccceEecCCc--cEEEeecCCccccCCCCC------cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh
Q 046589 625 DIKASNILLNEDF--DAKVLDFGLARLISDCKS------HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI 696 (729)
Q Consensus 625 dlk~~nill~~~~--~~kl~dfgl~~~~~~~~~------~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t 696 (729)
|+||+||+++.++ .+|++|||+++....... .......++..|+|||...+..++.++|||||||++|||+|
T Consensus 176 Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~ 255 (345)
T 2v62_A 176 DIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLC 255 (345)
T ss_dssp CCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHh
Confidence 9999999999777 999999999987642211 11134578899999999888889999999999999999999
Q ss_pred CCCCCCC---C---------------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 697 RKQPTGP---K---------------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 697 g~~p~~~---~---------------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.|+.. . ..++ +++..||+.+|++|||+++|+
T Consensus 256 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~ 320 (345)
T 2v62_A 256 GKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALK 320 (345)
T ss_dssp SSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHH
T ss_pred CCCCccccccccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHH
Confidence 9999842 0 0001 789999999999999999873
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-19 Score=187.47 Aligned_cols=105 Identities=26% Similarity=0.424 Sum_probs=81.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc--ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++........ ......++..|+|||......++.++|||||||++||++||+.|+.
T Consensus 139 Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~ 218 (295)
T 3ugc_A 139 DLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSK 218 (295)
T ss_dssp CCSGGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred CCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccC
Confidence 99999999999999999999999876532211 1123456677999998887889999999999999999999988865
Q ss_pred CC------------------------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PK------------------------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~------------------------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. +.+. +++..||+.+|++|||++|++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~ 283 (295)
T 3ugc_A 219 SPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLA 283 (295)
T ss_dssp SHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CChHHHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHH
Confidence 21 0011 799999999999999999873
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-19 Score=193.37 Aligned_cols=105 Identities=27% Similarity=0.350 Sum_probs=83.0
Q ss_pred cccccceEecCC---ccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCC
Q 046589 625 DIKASNILLNED---FDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQ 699 (729)
Q Consensus 625 dlk~~nill~~~---~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~ 699 (729)
|+||+||+++.+ ..+|++|||+++....... .......++.+|+|||......++.++|||||||++|||+| |+.
T Consensus 206 Dlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~ 285 (367)
T 3l9p_A 206 DIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYM 285 (367)
T ss_dssp CCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 999999999954 4699999999986432111 12223466789999998877889999999999999999998 888
Q ss_pred CCCCCcc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGPKFE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+...-. . .+++..||+.+|++|||+++|+
T Consensus 286 pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil 337 (367)
T 3l9p_A 286 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIIL 337 (367)
T ss_dssp SSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHH
Confidence 8763110 0 1799999999999999999874
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-19 Score=185.52 Aligned_cols=105 Identities=23% Similarity=0.412 Sum_probs=74.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..............++..|+|||......++.++||||+||++|||++ |+.|+..
T Consensus 141 dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~ 220 (281)
T 1mp8_A 141 DIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG 220 (281)
T ss_dssp CCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred cccHHHEEECCCCCEEECccccccccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCc
Confidence 999999999999999999999998765322222223455678999998877788999999999999999997 8888763
Q ss_pred C-cc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K-FE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~-~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .. + .+++..|++.+|++|||+++++
T Consensus 221 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~ 268 (281)
T 1mp8_A 221 VKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELK 268 (281)
T ss_dssp CCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 1 00 0 1799999999999999999863
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.5e-19 Score=183.58 Aligned_cols=104 Identities=25% Similarity=0.478 Sum_probs=86.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++|||||||++|||+||+.|+...
T Consensus 144 dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 222 (303)
T 3a7i_A 144 DIKAANVLLSEHGEVKLADFGVAGQLTDTQ-IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSEL 222 (303)
T ss_dssp CCSGGGEEECTTSCEEECCCTTCEECBTTB-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred CCChheEEECCCCCEEEeecccceecCccc-cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCc
Confidence 999999999999999999999998765321 1123456788999999988888899999999999999999999997631
Q ss_pred --------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 705 --------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 --------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+.. .+++..|+..+|++|||+++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll 269 (303)
T 3a7i_A 223 HPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELL 269 (303)
T ss_dssp CHHHHHHHHHHSCCCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHT
T ss_pred CHHHHHHHhhcCCCCCCccccCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence 001 1799999999999999999875
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-19 Score=187.12 Aligned_cols=104 Identities=27% Similarity=0.494 Sum_probs=78.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc--ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++........ ......++.+|+|||......++.++||||+||++|||+||+.|+.
T Consensus 141 dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~ 220 (311)
T 3ork_A 141 DVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT 220 (311)
T ss_dssp CCCGGGEEEETTSCEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999875432211 1223467899999998888889999999999999999999999986
Q ss_pred CCcc-----------------------h--HHHHhhcccCCCCCCCCcccc
Q 046589 703 PKFE-----------------------D--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 703 ~~~~-----------------------~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
..-. + .+++.+|++.+|++||+..++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~ 271 (311)
T 3ork_A 221 GDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAE 271 (311)
T ss_dssp CSSHHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHH
T ss_pred CCChHHHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhhChhhHHH
Confidence 3110 0 178999999999999988764
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-19 Score=189.77 Aligned_cols=105 Identities=21% Similarity=0.318 Sum_probs=79.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++........ ......++..|+|||......++.++||||+||++|||+| |+.|+.
T Consensus 142 Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~ 221 (327)
T 3lzb_A 142 DLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 221 (327)
T ss_dssp CCCGGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred CCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCC
Confidence 99999999999999999999999876432221 1223455678999998888889999999999999999999 999876
Q ss_pred C-Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... . .+++..||..+|++||+++|++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell 270 (327)
T 3lzb_A 222 GIPASEISSILEKGERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELI 270 (327)
T ss_dssp TCCGGGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 3 110 0 1799999999999999999873
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.76 E-value=9e-18 Score=167.80 Aligned_cols=152 Identities=26% Similarity=0.253 Sum_probs=127.9
Q ss_pred EEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccC
Q 046589 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188 (729)
Q Consensus 109 ~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 188 (729)
.++.+++.+. .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|+|+...+..|..+++|++|+|++|+
T Consensus 23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 4667767765 4665443 789999999999999888889999999999999999986666778899999999999999
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccccc
Q 046589 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGN 265 (729)
Q Consensus 189 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 265 (729)
+++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|+++ .++...|..+++|+.|++++|.+.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 98777777889999999999999998 77888889999999999999988 56657788889999999999988754
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.5e-19 Score=187.30 Aligned_cols=105 Identities=25% Similarity=0.316 Sum_probs=84.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCC---CcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCK---SHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~---~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++.+|++|||+++...... ........++.+|+|||...+ ..++.++||||+||++|||+||+.|
T Consensus 149 Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~p 228 (351)
T 3mi9_A 149 DMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPI 228 (351)
T ss_dssp CCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999998754211 112234567899999997754 5579999999999999999999998
Q ss_pred CCCC--------------------cc---------------------------------hHHHHhhcccCCCCCCCCccc
Q 046589 701 TGPK--------------------FE---------------------------------DKDIVVGCVSDNPIAKPGMLR 727 (729)
Q Consensus 701 ~~~~--------------------~~---------------------------------~~~l~~~c~~~~p~~Rp~~~~ 727 (729)
+... |. -.+++.+|++.+|++|||++|
T Consensus 229 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e 308 (351)
T 3mi9_A 229 MQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDD 308 (351)
T ss_dssp CCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred CCCCChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHH
Confidence 7521 10 016999999999999999998
Q ss_pred cC
Q 046589 728 VQ 729 (729)
Q Consensus 728 v~ 729 (729)
++
T Consensus 309 ~l 310 (351)
T 3mi9_A 309 AL 310 (351)
T ss_dssp HH
T ss_pred Hh
Confidence 74
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-19 Score=187.52 Aligned_cols=103 Identities=22% Similarity=0.362 Sum_probs=83.1
Q ss_pred cccccceEecC---CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNE---DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++. ++.+|++|||+++...... ......++.+|+|||......++.++||||+||++|||+||+.|+
T Consensus 156 Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf 233 (327)
T 3lm5_A 156 DLKPQNILLSSIYPLGDIKIVDFGMSRKIGHAC--ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPF 233 (327)
T ss_dssp CCCGGGEEESCBTTBCCEEECCGGGCEEC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cCChHHEEEecCCCCCcEEEeeCccccccCCcc--ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 99999999997 7899999999998764321 123457889999999988888999999999999999999999998
Q ss_pred CCCcc-----------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPKFE-----------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~~-----------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
...-. + .+++..|++.+|++|||+++++
T Consensus 234 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll 286 (327)
T 3lm5_A 234 VGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICL 286 (327)
T ss_dssp CCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHT
T ss_pred CCCCchHHHHHHHhcccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence 53100 0 1799999999999999999875
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-19 Score=196.91 Aligned_cols=101 Identities=22% Similarity=0.388 Sum_probs=84.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++++||+|||+++....... ......||..|+|||...+..++.++||||+||++|||+||+.||...
T Consensus 314 DLKP~NILl~~~g~vkL~DFGla~~~~~~~~-~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~ 392 (543)
T 3c4z_A 314 DLKPENVLLDDDGNVRISDLGLAVELKAGQT-KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRAR 392 (543)
T ss_dssp CCCGGGEEECTTSCEEECCCTTCEECCTTCC-CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCT
T ss_pred CCChHHEEEeCCCCEEEeecceeeeccCCCc-ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCC
Confidence 9999999999999999999999987653222 123457899999999988888999999999999999999999998641
Q ss_pred c----c-------------------h--HHHHhhcccCCCCCCCCcc
Q 046589 705 F----E-------------------D--KDIVVGCVSDNPIAKPGML 726 (729)
Q Consensus 705 ~----~-------------------~--~~l~~~c~~~~p~~Rp~~~ 726 (729)
- . . .+++.+|+..+|++||++.
T Consensus 393 ~~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~ 439 (543)
T 3c4z_A 393 GEKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGFR 439 (543)
T ss_dssp TCCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCCB
T ss_pred ccchhHHHHHHHHhhcccCCCcccCHHHHHHHHHhccCCHhHCCCCc
Confidence 0 0 0 1799999999999999874
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.7e-19 Score=182.23 Aligned_cols=104 Identities=22% Similarity=0.410 Sum_probs=86.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++....... ......++.+|+|||......++.++||||+||++|||+||+.|+...
T Consensus 140 dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~ 218 (294)
T 2rku_A 140 DLKLGNLFLNEDLEVKIGDFGLATKVEYDGE-RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS 218 (294)
T ss_dssp CCCGGGEEECTTCCEEECCCTTCEECCSTTC-CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred CCChHhEEEcCCCCEEEEeccCceecccCcc-ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999999999987643221 223456788999999888888899999999999999999999998631
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . .+++.+|+..+|++|||+++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll 264 (294)
T 2rku_A 219 CLKETYLRIKKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELL 264 (294)
T ss_dssp SHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGG
T ss_pred CHHHHHHHHhhccCCCccccCHHHHHHHHHHcccChhhCcCHHHHh
Confidence 11 1 1799999999999999999974
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.8e-19 Score=190.68 Aligned_cols=103 Identities=20% Similarity=0.321 Sum_probs=85.5
Q ss_pred cccccceEecC--CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNE--DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~--~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++. ++.+|++|||+++..... .......+|.+|+|||......++.++||||+||++|||+||+.|+.
T Consensus 174 Dlkp~NIll~~~~~~~vkL~DFG~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~ 251 (387)
T 1kob_A 174 DIKPENIMCETKKASSVKIIDFGLATKLNPD--EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFA 251 (387)
T ss_dssp CCCGGGEEESSTTCCCEEECCCTTCEECCTT--SCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred ccchHHeEEecCCCCceEEEecccceecCCC--cceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCC
Confidence 99999999984 478999999999876532 22334578899999999888889999999999999999999999986
Q ss_pred CC-------------c----------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PK-------------F----------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~-------------~----------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. | .+ .+++..|+..+|++|||+++++
T Consensus 252 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell 303 (387)
T 1kob_A 252 GEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDAL 303 (387)
T ss_dssp CSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHh
Confidence 31 0 01 1799999999999999999863
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-19 Score=191.31 Aligned_cols=105 Identities=20% Similarity=0.382 Sum_probs=81.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-------cceecccccccccCccccCC-------CCCCchhhHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-------HISTDVASAISYVPPEYGRA-------RKANERDNIYRFGVV 690 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-------~~~~~~~~~~~y~ape~~~~-------~~~~~~~Dv~s~G~v 690 (729)
|+||+||+++.++.+|++|||+++....... .......+|..|+|||...+ ..++.++|||||||+
T Consensus 145 Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~i 224 (336)
T 3g2f_A 145 DLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLI 224 (336)
T ss_dssp SCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHH
Confidence 8999999999999999999999987643211 11123468899999998765 355678999999999
Q ss_pred HHHHHhCCCCCCC---------------------------------------Ccc--------hHHHHhhcccCCCCCCC
Q 046589 691 LLELVIRKQPTGP---------------------------------------KFE--------DKDIVVGCVSDNPIAKP 723 (729)
Q Consensus 691 l~el~tg~~p~~~---------------------------------------~~~--------~~~l~~~c~~~~p~~Rp 723 (729)
+|||+||+.|+.. .|. -.+++..||+.+|++||
T Consensus 225 l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rp 304 (336)
T 3g2f_A 225 YWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARL 304 (336)
T ss_dssp HHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSC
T ss_pred HHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCc
Confidence 9999999777531 000 11789999999999999
Q ss_pred CccccC
Q 046589 724 GMLRVQ 729 (729)
Q Consensus 724 ~~~~v~ 729 (729)
|++||+
T Consensus 305 s~~e~l 310 (336)
T 3g2f_A 305 TAQXAE 310 (336)
T ss_dssp CHHHHH
T ss_pred chHHHH
Confidence 999873
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.8e-19 Score=194.02 Aligned_cols=76 Identities=34% Similarity=0.414 Sum_probs=59.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc---------------------ceecccccccccCcccc-CCCCCCchh
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH---------------------ISTDVASAISYVPPEYG-RARKANERD 682 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~---------------------~~~~~~~~~~y~ape~~-~~~~~~~~~ 682 (729)
|+||+||+++.++.+||+|||+|+........ ..+...+|.+|+|||.. ....++.++
T Consensus 154 Dlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~ 233 (432)
T 3n9x_A 154 DLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSI 233 (432)
T ss_dssp CCCGGGEEECTTCCEEECCCTTCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHH
T ss_pred CCCHHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCccc
Confidence 99999999999999999999999876432111 12456789999999974 556789999
Q ss_pred hHHHHHHHHHHHHhCCCC
Q 046589 683 NIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 683 Dv~s~G~vl~el~tg~~p 700 (729)
||||+||++|||+||..|
T Consensus 234 DiwSlG~il~ell~g~~p 251 (432)
T 3n9x_A 234 DIWSTGCIFAELLNMLQS 251 (432)
T ss_dssp HHHHHHHHHHHHHTTCTT
T ss_pred ccchHHHHHHHHHhcccc
Confidence 999999999999985443
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-19 Score=186.78 Aligned_cols=100 Identities=21% Similarity=0.374 Sum_probs=78.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++.+|+|||......++.++||||+||++|||++|+.|+...
T Consensus 146 Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 224 (327)
T 3a62_A 146 DLKPENIMLNHQGHVKLTDFGLCKESIHDG-TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE 224 (327)
T ss_dssp CCCTTTEEECTTSCEEECCCSCC-----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cCCHHHeEECCCCcEEEEeCCcccccccCC-ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCC
Confidence 999999999999999999999987643211 1223456889999999888888899999999999999999999998631
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCCCc
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp~~ 725 (729)
-. + .+++.+|+..+|++||++
T Consensus 225 ~~~~~~~~i~~~~~~~p~~~~~~~~~li~~~L~~dp~~R~~~ 266 (327)
T 3a62_A 225 NRKKTIDKILKCKLNLPPYLTQEARDLLKKLLKRNAASRLGA 266 (327)
T ss_dssp SHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSCGGGSTTS
T ss_pred CHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhcCHhhccCC
Confidence 11 1 179999999999999943
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-19 Score=182.53 Aligned_cols=102 Identities=28% Similarity=0.429 Sum_probs=79.1
Q ss_pred cccccceEec---CCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLN---EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~---~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++ .++.+|++|||+++..... .......++..|+|||... ..++.++||||+||++|||+||+.|+
T Consensus 149 dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf 225 (285)
T 3is5_A 149 DLKPENILFQDTSPHSPIKIIDFGLAELFKSD--EHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPF 225 (285)
T ss_dssp CCSGGGEEESSSSTTCCEEECCCCCCCC------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CCCHHHEEEecCCCCCCEEEEeeecceecCCc--ccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCC
Confidence 9999999994 5678999999999875432 1223456788999999774 56789999999999999999999998
Q ss_pred CCCc----------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPKF----------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~----------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
...- .+. +++.+|++.+|++|||++||+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l 277 (285)
T 3is5_A 226 TGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSAAQVL 277 (285)
T ss_dssp CCSSHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHH
T ss_pred CCCCHHHHHhhhccCCcccccccCcCCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 6310 011 799999999999999999874
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-19 Score=184.06 Aligned_cols=105 Identities=25% Similarity=0.346 Sum_probs=82.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..............++.+|+|||......++.++|||||||++|||+| |+.|+..
T Consensus 138 dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~ 217 (281)
T 3cc6_A 138 DIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFW 217 (281)
T ss_dssp CCSGGGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred CCccceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCccc
Confidence 999999999999999999999998765322222233456778999998877888999999999999999999 9999752
Q ss_pred -Cc-------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 -KF-------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~-------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .+ .+++.+|+..+|++|||+++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell 265 (281)
T 3cc6_A 218 LENKDVIGVLEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELV 265 (281)
T ss_dssp SCGGGHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CChHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHH
Confidence 00 01 1799999999999999999873
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-19 Score=191.03 Aligned_cols=105 Identities=27% Similarity=0.425 Sum_probs=85.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+||+|||+++....... .......++.+|+|||...+..++.++|||||||++|||+| |+.|+.
T Consensus 216 Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~ 295 (382)
T 3tt0_A 216 DLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP 295 (382)
T ss_dssp CCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred CCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999987653221 11223456788999998888889999999999999999999 888876
Q ss_pred CC-cc-------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PK-FE-------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~-~~-------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .. ++ +++..||+.+|++|||+++|+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell 344 (382)
T 3tt0_A 296 GVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLV 344 (382)
T ss_dssp TCCHHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 31 10 11 799999999999999999874
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-19 Score=184.44 Aligned_cols=137 Identities=27% Similarity=0.443 Sum_probs=111.4
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
+.+...+.+|+|+||.||+|...+++.||||.
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 87 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEH 87 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTT
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCC
Confidence 45566678999999999999998888999996
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|+||+||+++.++.+|++|||+++..............+
T Consensus 88 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~ 167 (267)
T 3t9t_A 88 GCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 167 (267)
T ss_dssp CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTC
T ss_pred CcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEcccccccccccccccccccccc
Confidence 999999999999999999999998754211111123455
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCcc--------------------h--HHHHhhcccCCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGPKFE--------------------D--KDIVVGCVSDNPI 720 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~~~~--------------------~--~~l~~~c~~~~p~ 720 (729)
+..|+|||......++.++||||+||++|||+| |+.|+...-. . .+++.+|+..+|+
T Consensus 168 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~ 247 (267)
T 3t9t_A 168 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPE 247 (267)
T ss_dssp CGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred cccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCCcCCCCccCcHHHHHHHHHHccCChh
Confidence 678999998877788999999999999999999 8888753100 0 1799999999999
Q ss_pred CCCCccccC
Q 046589 721 AKPGMLRVQ 729 (729)
Q Consensus 721 ~Rp~~~~v~ 729 (729)
+|||+++++
T Consensus 248 ~Rps~~~ll 256 (267)
T 3t9t_A 248 DRPAFSRLL 256 (267)
T ss_dssp GSCCHHHHH
T ss_pred hCcCHHHHH
Confidence 999999863
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-19 Score=183.59 Aligned_cols=104 Identities=33% Similarity=0.611 Sum_probs=83.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++......... .....++.+|+|||...+ .++.++||||+||++|||+||+.|+..
T Consensus 158 dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~ 236 (307)
T 2nru_A 158 DIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDE 236 (307)
T ss_dssp CCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCT
T ss_pred CCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCccc
Confidence 999999999999999999999998755322221 223567899999997653 578899999999999999999999763
Q ss_pred C----cc----h----------------------------HHHHhhcccCCCCCCCCccccC
Q 046589 704 K----FE----D----------------------------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~----~~----~----------------------------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .. + .+++..|++.+|.+|||+++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~ 298 (307)
T 2nru_A 237 HREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQ 298 (307)
T ss_dssp TBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CcchHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHH
Confidence 1 00 0 0689999999999999999873
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-19 Score=191.83 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=84.4
Q ss_pred cccccceEec-CCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLN-EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++ .++.+||+|||+|+....... .....++.+|+|||...+ ..++.++||||+||++|||++|+.|+.
T Consensus 166 Dlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~ 243 (394)
T 4e7w_A 166 DIKPQNLLLDPPSGVLKLIDFGSAKILIAGEP--NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFP 243 (394)
T ss_dssp CCSGGGEEEETTTTEEEECCCTTCEECCTTCC--CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCCHHHEEEcCCCCcEEEeeCCCcccccCCCC--CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999 789999999999987653222 234567889999997754 458999999999999999999999986
Q ss_pred CCc------------------------------------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PKF------------------------------------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~------------------------------------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..- .++ +++.+|+..+|++|||++|++
T Consensus 244 ~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 320 (394)
T 4e7w_A 244 GESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEAL 320 (394)
T ss_dssp CSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHh
Confidence 310 011 799999999999999998863
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=8.5e-19 Score=185.50 Aligned_cols=135 Identities=16% Similarity=0.307 Sum_probs=111.8
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
+.|...+.||+|+||.||+|.. .+++.||||.
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~ 115 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHV 115 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECC
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEecc
Confidence 5677788899999999999986 5888999995
Q ss_pred ---------------------------------------cccccceEecCCc-cEEEeecCCccccCCCCCcceeccccc
Q 046589 625 ---------------------------------------DIKASNILLNEDF-DAKVLDFGLARLISDCKSHISTDVASA 664 (729)
Q Consensus 625 ---------------------------------------dlk~~nill~~~~-~~kl~dfgl~~~~~~~~~~~~~~~~~~ 664 (729)
|+||+||+++.++ .+|++|||+++...... ......++
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~~ 193 (330)
T 3nsz_A 116 NNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ--EYNVRVAS 193 (330)
T ss_dssp CCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTC--CCCSCCSC
T ss_pred CchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCC--cccccccc
Confidence 9999999999766 89999999998765322 22345678
Q ss_pred ccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCCC---------------------------------------
Q 046589 665 ISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGPK--------------------------------------- 704 (729)
Q Consensus 665 ~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~~--------------------------------------- 704 (729)
.+|+|||.... ..++.++||||+||++|||+||+.|+...
T Consensus 194 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (330)
T 3nsz_A 194 RYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILG 273 (330)
T ss_dssp GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHC
T ss_pred ccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhh
Confidence 89999998765 67899999999999999999999998321
Q ss_pred ------c------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 705 ------F------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ------~------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
| .+. +++.+|++.+|++|||++|++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l 318 (330)
T 3nsz_A 274 RHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAM 318 (330)
T ss_dssp CCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHH
T ss_pred hccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHh
Confidence 0 111 699999999999999999874
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=181.71 Aligned_cols=136 Identities=29% Similarity=0.473 Sum_probs=109.4
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+.|.....+|.|+||.||+|... +|+.||||.
T Consensus 29 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 108 (314)
T 3com_A 29 EVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGA 108 (314)
T ss_dssp -CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred hhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCC
Confidence 45667778999999999999885 688999995
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|+||+||+++.++.+|++|||+++...... .......+
T Consensus 109 ~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~ 187 (314)
T 3com_A 109 GSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTM-AKRNTVIG 187 (314)
T ss_dssp EEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTB-SCBCCCCS
T ss_pred CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhc-cccCccCC
Confidence 999999999999999999999997754321 12234567
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC----------------------cch--HHHHhhcccCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK----------------------FED--KDIVVGCVSDNP 719 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~----------------------~~~--~~l~~~c~~~~p 719 (729)
+..|+|||......++.++||||+||++|||++|+.|+... |.. .+++..|+..+|
T Consensus 188 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp 267 (314)
T 3com_A 188 TPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSP 267 (314)
T ss_dssp CGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHTCSCT
T ss_pred CCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccCCcccCCHHHHHHHHHHccCCh
Confidence 88999999988888899999999999999999999997521 111 179999999999
Q ss_pred CCCCCccccC
Q 046589 720 IAKPGMLRVQ 729 (729)
Q Consensus 720 ~~Rp~~~~v~ 729 (729)
++|||+++++
T Consensus 268 ~~Rpt~~~ll 277 (314)
T 3com_A 268 EQRATATQLL 277 (314)
T ss_dssp TTSCCHHHHT
T ss_pred hhCcCHHHHH
Confidence 9999999875
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-19 Score=189.84 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=83.0
Q ss_pred cccccceEecC-----------CccEEEeecCCccccCCC-CCcceecccccccccCccccCCCCCCchhhHHHHHHHHH
Q 046589 625 DIKASNILLNE-----------DFDAKVLDFGLARLISDC-KSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLL 692 (729)
Q Consensus 625 dlk~~nill~~-----------~~~~kl~dfgl~~~~~~~-~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~ 692 (729)
|+||+||+++. ++.+||+|||+|+..... .........+|.+|+|||...+..++.++|||||||++|
T Consensus 197 DiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ 276 (365)
T 3e7e_A 197 DIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVY 276 (365)
T ss_dssp CCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHH
T ss_pred CCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHH
Confidence 99999999998 899999999999765421 222334567899999999988888999999999999999
Q ss_pred HHHhCCCCCCC--------------Ccch---HHHHhhcccCCCCCCC-Cccc
Q 046589 693 ELVIRKQPTGP--------------KFED---KDIVVGCVSDNPIAKP-GMLR 727 (729)
Q Consensus 693 el~tg~~p~~~--------------~~~~---~~l~~~c~~~~p~~Rp-~~~~ 727 (729)
||+||+.|+.. .|.. .+++..|+..+|.+|+ ++++
T Consensus 277 elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~r~~~~~~ 329 (365)
T 3e7e_A 277 CMLFGTYMKVKNEGGECKPEGLFRRLPHLDMWNEFFHVMLNIPDCHHLPSLDL 329 (365)
T ss_dssp HHHHSSCCCEEEETTEEEECSCCTTCSSHHHHHHHHHHHHCCCCTTCCCCHHH
T ss_pred HHHhCCCccccCCCCceeechhccccCcHHHHHHHHHHHcCCCCCCcchHHHH
Confidence 99999999752 1111 1789999999999985 4443
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-18 Score=184.30 Aligned_cols=103 Identities=22% Similarity=0.339 Sum_probs=85.7
Q ss_pred cccccceEecCCc----cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDF----DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~----~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++ .+|++|||+++...... ......++..|+|||......++.++||||+||++|||+||+.|
T Consensus 140 dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p 217 (321)
T 2a2a_A 140 DLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGV--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 217 (321)
T ss_dssp CCSGGGEEESCTTSSSCCEEECCCTTCEECCTTC--CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCS
T ss_pred CCChHHEEEecCCCCcCCEEEccCccceecCccc--cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCC
Confidence 9999999999887 79999999998765321 22345678999999988888889999999999999999999999
Q ss_pred CCCC---------------cch----------HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPK---------------FED----------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~---------------~~~----------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+... +.. .+++..|+..+|++|||++|++
T Consensus 218 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l 271 (321)
T 2a2a_A 218 FLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEAL 271 (321)
T ss_dssp SCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHH
T ss_pred CCCCCHHHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHh
Confidence 8631 110 1799999999999999999863
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-19 Score=185.44 Aligned_cols=103 Identities=18% Similarity=0.286 Sum_probs=83.5
Q ss_pred cccccceEe----cCCccEEEeecCCccccCCCCCcceecccccccccCccccC--------CCCCCchhhHHHHHHHHH
Q 046589 625 DIKASNILL----NEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR--------ARKANERDNIYRFGVVLL 692 (729)
Q Consensus 625 dlk~~nill----~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~--------~~~~~~~~Dv~s~G~vl~ 692 (729)
|+||+||++ +.++.+|++|||+++...... ......++..|+|||... ...++.++|||||||++|
T Consensus 137 Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~ 214 (319)
T 4euu_A 137 NIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDE--QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFY 214 (319)
T ss_dssp CCSGGGEEEEECTTSCEEEEECCCTTCEECCTTC--CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHH
T ss_pred CCCHHHEEEeccCCCCceEEEccCCCceecCCCC--ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHH
Confidence 999999999 788899999999998765322 223456889999999764 467889999999999999
Q ss_pred HHHhCCCCCCC-C---------------------------------cc----------h------HHHHhhcccCCCCCC
Q 046589 693 ELVIRKQPTGP-K---------------------------------FE----------D------KDIVVGCVSDNPIAK 722 (729)
Q Consensus 693 el~tg~~p~~~-~---------------------------------~~----------~------~~l~~~c~~~~p~~R 722 (729)
||+||+.|+.. . |. . .+++..|++.+|++|
T Consensus 215 el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R 294 (319)
T 4euu_A 215 HAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKC 294 (319)
T ss_dssp HHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTS
T ss_pred HHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhh
Confidence 99999999741 0 00 0 068899999999999
Q ss_pred CCccccC
Q 046589 723 PGMLRVQ 729 (729)
Q Consensus 723 p~~~~v~ 729 (729)
||++|++
T Consensus 295 ~s~~ell 301 (319)
T 4euu_A 295 WGFDQFF 301 (319)
T ss_dssp CCHHHHH
T ss_pred ccHHHhh
Confidence 9999863
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-18 Score=186.61 Aligned_cols=101 Identities=22% Similarity=0.267 Sum_probs=84.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+||+|||+++.... ..+...+|.+|+|||...+ ..++.++||||+||++|||++|+.|+..
T Consensus 153 Dlkp~NIll~~~~~~kl~Dfg~a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~ 228 (367)
T 1cm8_A 153 DLKPGNLAVNEDCELKILDFGLARQADS----EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKG 228 (367)
T ss_dssp CCCGGGEEECTTCCEEECCCTTCEECCS----SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CcCHHHEEEcCCCCEEEEeeeccccccc----ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999987542 1234567899999997665 6789999999999999999999999863
Q ss_pred Cc--------------------------------------------------c--hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KF--------------------------------------------------E--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--------------------------------------------------~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.- . ..+++.+|+..+|++|||+++++
T Consensus 229 ~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l 306 (367)
T 1cm8_A 229 SDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEAL 306 (367)
T ss_dssp SSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred CCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHh
Confidence 10 0 01689999999999999999863
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-18 Score=185.32 Aligned_cols=104 Identities=22% Similarity=0.411 Sum_probs=87.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++.+|+|||......++.++|||||||++|||+||+.|+...
T Consensus 166 dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 244 (335)
T 2owb_A 166 DLKLGNLFLNEDLEVKIGDFGLATKVEYDG-ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS 244 (335)
T ss_dssp CCCGGGEEECTTCCEEECCCTTCEECCSTT-CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred CCCchhEEEcCCCCEEEeeccCceecccCc-ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCC
Confidence 999999999999999999999998764322 1223456788999999888888899999999999999999999998642
Q ss_pred cc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 705 FE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . .+++..|++.+|++|||+++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell 290 (335)
T 2owb_A 245 CLKETYLRIKKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELL 290 (335)
T ss_dssp SHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGG
T ss_pred CHHHHHHHHhcCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence 11 1 1799999999999999999975
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-19 Score=195.48 Aligned_cols=101 Identities=27% Similarity=0.495 Sum_probs=82.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.+||+|||+++..... .....++..|+|||......++.++|||||||++|||+| |+.|+..
T Consensus 314 Dlkp~Nill~~~~~~kl~DfG~a~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~ 389 (450)
T 1k9a_A 314 DLAARNVLVSEDNVAKVSDFGLTKEASST----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR 389 (450)
T ss_dssp CCCGGGEEECTTSCEEECCCTTCEECC----------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred CCCHhhEEECCCCCEEEeeCCCccccccc----ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999864321 112355778999999888889999999999999999999 9988752
Q ss_pred -Ccc-------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 704 -KFE-------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~~-------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... +. +++..||..+|++|||+++++
T Consensus 390 ~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~ 437 (450)
T 1k9a_A 390 IPLKDVVPRVEKGYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLR 437 (450)
T ss_dssp SCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 100 01 799999999999999999863
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.7e-19 Score=185.24 Aligned_cols=103 Identities=26% Similarity=0.413 Sum_probs=68.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCcccc----CCCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYG----RARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~----~~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++.+|++|||+++...... ......++.+|+|||.. ....++.++|||||||++|||+||+.|
T Consensus 151 dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p 228 (327)
T 3aln_A 151 DIKPSNILLDRSGNIKLCDFGISGQLVDSI--AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFP 228 (327)
T ss_dssp CCCGGGEEEETTTEEEECCCSSSCC--------------------------------CCSHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCHHHEEEcCCCCEEEccCCCceeccccc--ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999998754321 12234678899999987 456688999999999999999999999
Q ss_pred CCCC-----------------c--------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPK-----------------F--------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~-----------------~--------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+... + .+ .+++..|++.+|++|||+++++
T Consensus 229 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell 284 (327)
T 3aln_A 229 YPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELL 284 (327)
T ss_dssp SSCC-------CCCCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred CCCcchHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHH
Confidence 7520 0 01 1799999999999999999875
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-19 Score=192.15 Aligned_cols=103 Identities=22% Similarity=0.277 Sum_probs=83.4
Q ss_pred cccccceEecCC-ccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNED-FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~-~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.+ +.+||+|||+++....... .....++.+|+|||...+ ..++.++||||+||++|||++|+.||.
T Consensus 181 Dlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~ 258 (420)
T 1j1b_A 181 DIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP--NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP 258 (420)
T ss_dssp CCSGGGEEEETTTTEEEECCCTTCEECCTTCC--CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCChhhEEEeCCCCeEEeccchhhhhcccCCC--ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCC
Confidence 999999999955 6789999999987643222 234567899999998755 478999999999999999999999985
Q ss_pred CC----------------------------------------cc--------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PK----------------------------------------FE--------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~----------------------------------------~~--------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. |. . .+++.+|+..+|++|||++|++
T Consensus 259 ~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l 335 (420)
T 1j1b_A 259 GDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEAC 335 (420)
T ss_dssp CSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHh
Confidence 31 10 1 1799999999999999998863
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-19 Score=183.22 Aligned_cols=105 Identities=30% Similarity=0.503 Sum_probs=76.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCC-CcceecccccccccCccccC---CCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCK-SHISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~-~~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++.+|++|||+++...... ........++..|+|||... ...++.++||||+||++|||+||+.|
T Consensus 145 Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p 224 (289)
T 3og7_A 145 DLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLP 224 (289)
T ss_dssp CCCGGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCT
T ss_pred cCccceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCC
Confidence 999999999999999999999997654211 12223456889999999765 56778899999999999999999999
Q ss_pred CCCCcc-------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPKFE-------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~~~-------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+..... + .+++..|++.+|++|||+++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell 280 (289)
T 3og7_A 225 YSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRIL 280 (289)
T ss_dssp TSSCCCHHHHHHHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred ccccchHHHHHHHhcccccCcchhhccccCCHHHHHHHHHHccCChhhCCCHHHHH
Confidence 852100 1 1799999999999999999873
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-19 Score=193.19 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=82.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC-----------CCCchhhHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR-----------KANERDNIYRFGVVLLE 693 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~-----------~~~~~~Dv~s~G~vl~e 693 (729)
|+||+||+++.++.+||+|||+++.... ......+ .+|+|||..... .++.++|||||||++||
T Consensus 231 Dikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~e 305 (377)
T 3byv_A 231 YLRPVDIVLDQRGGVFLTGFEHLVRDGA----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYW 305 (377)
T ss_dssp CCCGGGEEECTTCCEEECCGGGCEETTC----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHH
T ss_pred CCCHHHEEEcCCCCEEEEechhheecCC----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHH
Confidence 9999999999999999999999986321 2334556 899999987766 78999999999999999
Q ss_pred HHhCCCCCCCC---------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 694 LVIRKQPTGPK---------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 694 l~tg~~p~~~~---------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+||+.|+... +.+. +++..|++.+|++|||+++++
T Consensus 306 lltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l 358 (377)
T 3byv_A 306 IWCADLPITKDAALGGSEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAM 358 (377)
T ss_dssp HHHSSCCC------CCSGGGGSSCCCCCHHHHHHHHHHTCSSGGGCCCHHHHH
T ss_pred HHHCCCCCcccccccchhhhhhhccCCCHHHHHHHHHHcCCCchhCCCHHHHh
Confidence 99999998631 1111 899999999999999999874
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-19 Score=183.82 Aligned_cols=104 Identities=25% Similarity=0.323 Sum_probs=74.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++..............++..|+|||......++.++|||||||++|||+||+.|+...
T Consensus 159 dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 238 (309)
T 2h34_A 159 DVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGD 238 (309)
T ss_dssp CCCGGGEEECTTSCEEECSCCC----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSC
T ss_pred CCChHHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCc
Confidence 99999999999999999999998875532222223456788999999988888899999999999999999999998631
Q ss_pred c----------------------ch--HHHHhhcccCCCCCCC-Ccccc
Q 046589 705 F----------------------ED--KDIVVGCVSDNPIAKP-GMLRV 728 (729)
Q Consensus 705 ~----------------------~~--~~l~~~c~~~~p~~Rp-~~~~v 728 (729)
- .. .+++.+|+..+|++|| +++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l 287 (309)
T 2h34_A 239 QLSVMGAHINQAIPRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDL 287 (309)
T ss_dssp HHHHHHHHHHSCCCCGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHH
T ss_pred hHHHHHHHhccCCCCccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHH
Confidence 0 01 1799999999999999 88775
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-18 Score=187.65 Aligned_cols=103 Identities=21% Similarity=0.395 Sum_probs=84.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC------CCCCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR------ARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~------~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||.||+++.++.++++|||++....... ......++.+|+|||+.. ...++.++||||+||++|||+||+
T Consensus 225 Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~ 302 (365)
T 2y7j_A 225 DLKPENILLDDNMQIRLSDFGFSCHLEPGE--KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGS 302 (365)
T ss_dssp CCSGGGEEECTTCCEEECCCTTCEECCTTC--CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHEEECCCCCEEEEecCcccccCCCc--ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCC
Confidence 999999999999999999999998765322 223457889999999764 235788999999999999999999
Q ss_pred CCCCCC---------------cc----------hHHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGPK---------------FE----------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~~---------------~~----------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+... +. -.+++.+|++.+|++|||+++++
T Consensus 303 ~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell 358 (365)
T 2y7j_A 303 PPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQAL 358 (365)
T ss_dssp CSSCCSSHHHHHHHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHh
Confidence 998521 00 11799999999999999999874
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-19 Score=183.42 Aligned_cols=137 Identities=29% Similarity=0.507 Sum_probs=113.3
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+++.....+|+|+||.||+|... ++..||||.
T Consensus 13 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~ 92 (288)
T 3kfa_A 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMT 92 (288)
T ss_dssp GGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred cceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcCC
Confidence 45667778999999999999986 578899985
Q ss_pred -------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecc
Q 046589 625 -------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDV 661 (729)
Q Consensus 625 -------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~ 661 (729)
|+||+||+++.++.++++|||+++.............
T Consensus 93 ~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~ 172 (288)
T 3kfa_A 93 YGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172 (288)
T ss_dssp TEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETTE
T ss_pred CCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccCC
Confidence 9999999999999999999999987654332223345
Q ss_pred cccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC-Ccc-------------------hH--HHHhhcccCC
Q 046589 662 ASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP-KFE-------------------DK--DIVVGCVSDN 718 (729)
Q Consensus 662 ~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~-~~~-------------------~~--~l~~~c~~~~ 718 (729)
.++..|+|||......++.++||||+||++|||++ |+.|+.. ... +. +++..|+..+
T Consensus 173 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~d 252 (288)
T 3kfa_A 173 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWN 252 (288)
T ss_dssp EECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSS
T ss_pred ccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 56778999998877888999999999999999999 8888752 110 11 7999999999
Q ss_pred CCCCCCccccC
Q 046589 719 PIAKPGMLRVQ 729 (729)
Q Consensus 719 p~~Rp~~~~v~ 729 (729)
|++|||+++++
T Consensus 253 p~~Rps~~~~~ 263 (288)
T 3kfa_A 253 PSDRPSFAEIH 263 (288)
T ss_dssp GGGSCCHHHHH
T ss_pred hhhCcCHHHHH
Confidence 99999999863
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-19 Score=186.89 Aligned_cols=104 Identities=23% Similarity=0.385 Sum_probs=77.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++........ ......++..|+|||......++.++||||+||++|||+| |+.|+.
T Consensus 162 Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~ 241 (323)
T 3qup_A 162 DLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYA 241 (323)
T ss_dssp CCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred CCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCcc
Confidence 99999999999999999999999875432211 1223455678999998877888999999999999999999 888876
Q ss_pred CCcc--------------------hH--HHHhhcccCCCCCCCCcccc
Q 046589 703 PKFE--------------------DK--DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 703 ~~~~--------------------~~--~l~~~c~~~~p~~Rp~~~~v 728 (729)
..-. +. +++.+|++.+|++|||+.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 289 (323)
T 3qup_A 242 GIENAEIYNYLIGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCL 289 (323)
T ss_dssp TCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHH
T ss_pred ccChHHHHHHHhcCCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHH
Confidence 3100 11 79999999999999998776
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.4e-19 Score=188.41 Aligned_cols=135 Identities=19% Similarity=0.330 Sum_probs=102.7
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+.|.....+|+|+||+||+|+.. +|+.||||.
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~ 99 (361)
T 3uc3_A 20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYAS 99 (361)
T ss_dssp TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCC
T ss_pred CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCC
Confidence 46777788999999999999985 888999995
Q ss_pred -----------------------------------------cccccceEecCCcc--EEEeecCCccccCCCCCcceecc
Q 046589 625 -----------------------------------------DIKASNILLNEDFD--AKVLDFGLARLISDCKSHISTDV 661 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~--~kl~dfgl~~~~~~~~~~~~~~~ 661 (729)
|+||+||+++.++. +|++|||+++..... ......
T Consensus 100 ~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~--~~~~~~ 177 (361)
T 3uc3_A 100 GGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH--SQPKST 177 (361)
T ss_dssp SCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC--------------
T ss_pred CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCcccccccc--CCCCCC
Confidence 99999999987665 999999999753321 112345
Q ss_pred cccccccCccccCCCCCCch-hhHHHHHHHHHHHHhCCCCCCCC-----c--------------------chH--HHHhh
Q 046589 662 ASAISYVPPEYGRARKANER-DNIYRFGVVLLELVIRKQPTGPK-----F--------------------EDK--DIVVG 713 (729)
Q Consensus 662 ~~~~~y~ape~~~~~~~~~~-~Dv~s~G~vl~el~tg~~p~~~~-----~--------------------~~~--~l~~~ 713 (729)
.+|.+|+|||......+..+ +||||+||++|||+||+.|+... + .+. +++.+
T Consensus 178 ~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~ 257 (361)
T 3uc3_A 178 VGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLISR 257 (361)
T ss_dssp ---CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCHHHHHHHHH
T ss_pred cCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCHHHHHHHHH
Confidence 68899999998776666655 89999999999999999998631 0 011 79999
Q ss_pred cccCCCCCCCCccccC
Q 046589 714 CVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 714 c~~~~p~~Rp~~~~v~ 729 (729)
|+..+|++|||++|++
T Consensus 258 ~L~~dP~~Rps~~ell 273 (361)
T 3uc3_A 258 IFVADPATRISIPEIK 273 (361)
T ss_dssp HSCSCTTTSCCHHHHH
T ss_pred HccCChhHCcCHHHHH
Confidence 9999999999999863
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.3e-19 Score=183.33 Aligned_cols=101 Identities=25% Similarity=0.457 Sum_probs=78.2
Q ss_pred cccccceEecCCcc-EEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFD-AKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~-~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++. +|++|||+++..... .....++..|+|||......++.++|||||||++|||+||+.|+..
T Consensus 130 dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~ 205 (307)
T 2eva_A 130 DLKPPNLLLVAGGTVLKICDFGTACDIQTH----MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDE 205 (307)
T ss_dssp CCSGGGEEEETTTTEEEECCCCC----------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTT
T ss_pred CCChhHEEEeCCCCEEEEcccccccccccc----cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchh
Confidence 99999999988775 899999998764321 2234678899999998888899999999999999999999999863
Q ss_pred C-cc---------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K-FE---------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~-~~---------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .. + .+++.+|++.+|++|||+++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell 255 (307)
T 2eva_A 206 IGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIV 255 (307)
T ss_dssp TCSSHHHHHHHHHTTCCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred hCccHHHHHHHHhcCCCCCcccccCHHHHHHHHHHhcCChhhCcCHHHHH
Confidence 1 00 0 1799999999999999999873
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-18 Score=183.32 Aligned_cols=136 Identities=21% Similarity=0.425 Sum_probs=106.1
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
+.|.....+|+|+||.||+|...+++.||||.
T Consensus 28 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 107 (313)
T 3cek_A 28 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 107 (313)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEE
T ss_pred ceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEE
Confidence 45677788999999999999998899999995
Q ss_pred --------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCc-cee
Q 046589 625 --------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSH-IST 659 (729)
Q Consensus 625 --------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~ 659 (729)
|+||+||++++ +.+|++|||+++........ ...
T Consensus 108 e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~~ 186 (313)
T 3cek_A 108 ECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVVKD 186 (313)
T ss_dssp CCCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEET-TEEEECCCSSSCC-----------
T ss_pred ecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEEC-CeEEEeeccccccccCcccccccc
Confidence 99999999964 88999999999876432221 122
Q ss_pred cccccccccCccccCC-----------CCCCchhhHHHHHHHHHHHHhCCCCCCCCcc----------------------
Q 046589 660 DVASAISYVPPEYGRA-----------RKANERDNIYRFGVVLLELVIRKQPTGPKFE---------------------- 706 (729)
Q Consensus 660 ~~~~~~~y~ape~~~~-----------~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~---------------------- 706 (729)
...++.+|+|||.... ..++.++|||||||++|||+||+.|+.....
T Consensus 187 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (313)
T 3cek_A 187 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPE 266 (313)
T ss_dssp ---CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSC
T ss_pred CCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCcccch
Confidence 3467899999997654 4678899999999999999999999763100
Q ss_pred h--HHHHhhcccCCCCCCCCccccC
Q 046589 707 D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 707 ~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+ .+++..|++.+|++||+++|++
T Consensus 267 ~~l~~li~~~l~~dp~~Rps~~ell 291 (313)
T 3cek_A 267 KDLQDVLKCCLKRDPKQRISIPELL 291 (313)
T ss_dssp HHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred HHHHHHHHHHccCCcccCcCHHHHh
Confidence 0 1799999999999999999874
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-19 Score=202.13 Aligned_cols=137 Identities=30% Similarity=0.515 Sum_probs=111.8
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
+.+.....||+|+||.||+|.+.++..||||.
T Consensus 267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~e~~~~g 346 (535)
T 2h8h_A 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKG 346 (535)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTE
T ss_pred hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEeeehhcCC
Confidence 45566678999999999999998888899996
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|||++||+++.++.+||+|||+++..............+
T Consensus 347 sL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~ 426 (535)
T 2h8h_A 347 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF 426 (535)
T ss_dssp EHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTS
T ss_pred cHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcC
Confidence 999999999999999999999998754211111123455
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCcc--------------------h--HHHHhhcccCCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGPKFE--------------------D--KDIVVGCVSDNPI 720 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~~~~--------------------~--~~l~~~c~~~~p~ 720 (729)
+..|+|||......++.++|||||||++|||+| |+.|+..... + .+++..||..+|+
T Consensus 427 ~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~ 506 (535)
T 2h8h_A 427 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 506 (535)
T ss_dssp CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred cccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 678999998877889999999999999999999 8888753110 1 1799999999999
Q ss_pred CCCCccccC
Q 046589 721 AKPGMLRVQ 729 (729)
Q Consensus 721 ~Rp~~~~v~ 729 (729)
+||||++|+
T Consensus 507 ~RPt~~~l~ 515 (535)
T 2h8h_A 507 ERPTFEYLQ 515 (535)
T ss_dssp GSCCHHHHH
T ss_pred HCcCHHHHH
Confidence 999999863
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=179.23 Aligned_cols=105 Identities=25% Similarity=0.432 Sum_probs=84.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||++........ .......++..|+|||......+ +.++||||+||++|||+||+.|+.
T Consensus 130 dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~ 209 (276)
T 2yex_A 130 DIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 209 (276)
T ss_dssp CCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCS
T ss_pred CCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999976542211 11234567889999998876554 778999999999999999999986
Q ss_pred CCcc----------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PKFE----------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~~----------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..-. . .+++..|++.+|++|||+++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il 260 (276)
T 2yex_A 210 QPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIK 260 (276)
T ss_dssp CSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred CCchHHHHHHHhhhcccccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHh
Confidence 3100 0 1799999999999999999875
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-19 Score=181.49 Aligned_cols=102 Identities=27% Similarity=0.461 Sum_probs=78.1
Q ss_pred cccccceEecC--------CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh
Q 046589 625 DIKASNILLNE--------DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI 696 (729)
Q Consensus 625 dlk~~nill~~--------~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t 696 (729)
|+||+||+++. ++.+|++|||+++...... .....++..|+|||...+..++.++||||+||++||++|
T Consensus 133 dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~ 209 (271)
T 3dtc_A 133 DLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTT---KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLT 209 (271)
T ss_dssp CCSGGGEEESSCCSSSCCSSCCEEECCCCC----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCchHHEEEecccccccccCcceEEccCCccccccccc---ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHh
Confidence 99999999986 6789999999998654321 223467889999998877888999999999999999999
Q ss_pred CCCCCCCCc---------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 697 RKQPTGPKF---------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 697 g~~p~~~~~---------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.|+...- .+ .+++.+|++.+|++|||++|++
T Consensus 210 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l 265 (271)
T 3dtc_A 210 GEVPFRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNIL 265 (271)
T ss_dssp CCCTTTTSCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCCCCCCCHHHHHHhhhcCCCCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHH
Confidence 999986310 01 1799999999999999999873
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=189.88 Aligned_cols=78 Identities=27% Similarity=0.346 Sum_probs=58.9
Q ss_pred cccccceEe----cCCccEEEeecCCccccCCCCC--cceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhC
Q 046589 625 DIKASNILL----NEDFDAKVLDFGLARLISDCKS--HISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIR 697 (729)
Q Consensus 625 dlk~~nill----~~~~~~kl~dfgl~~~~~~~~~--~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg 697 (729)
|+||+||++ +.++.+||+|||+|+....... .......+|.+|+|||...+ ..++.++||||+||++|||+||
T Consensus 153 Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g 232 (405)
T 3rgf_A 153 DLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTS 232 (405)
T ss_dssp CCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHS
T ss_pred CcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhC
Confidence 999999999 6778999999999987643211 11234578899999998765 4589999999999999999999
Q ss_pred CCCCC
Q 046589 698 KQPTG 702 (729)
Q Consensus 698 ~~p~~ 702 (729)
+.|+.
T Consensus 233 ~~pf~ 237 (405)
T 3rgf_A 233 EPIFH 237 (405)
T ss_dssp SCTTC
T ss_pred CCCCC
Confidence 99984
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=165.27 Aligned_cols=154 Identities=21% Similarity=0.280 Sum_probs=138.3
Q ss_pred CcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccC
Q 046589 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSG 210 (729)
Q Consensus 131 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 210 (729)
-+.++++++.++.++. .+. ++|+.|+|++|+|++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 13 ~~~v~c~~~~l~~iP~-~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPT-NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTEEECTTSCCSSCCS-SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CCEEEcCCCCcCcCCC-ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 3689999999988654 332 6899999999999987788999999999999999999998899999999999999999
Q ss_pred CCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccc
Q 046589 211 NGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTG 288 (729)
Q Consensus 211 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 288 (729)
|.++...+..|..+++|++|+|++|.++ .++...|..+++|++|+|++|.+++..+..+..+++|+.+++++|.+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9999666667899999999999999998 4555789999999999999999998888889999999999999998864
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-18 Score=183.28 Aligned_cols=104 Identities=24% Similarity=0.416 Sum_probs=76.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++|||||||++|||+||+.|+..
T Consensus 161 dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~ 239 (310)
T 2wqm_A 161 DIKPANVFITATGVVKLGDLGLGRFFSSKT-TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD 239 (310)
T ss_dssp CCCGGGEEECTTSCEEECCC-------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC--
T ss_pred CCcHHHEEEcCCCCEEEEeccceeeecCCC-ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence 999999999999999999999988754321 112234678899999988888899999999999999999999999853
Q ss_pred Cc----------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 704 KF----------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~----------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .+. +++..|+..+|++|||+++|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il 289 (310)
T 2wqm_A 240 KMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVY 289 (310)
T ss_dssp -CCHHHHHHHHHTTCSCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred chhHHHHHHHhhcccCCCCcccccCHHHHHHHHHHcCCChhhCCCHHHHH
Confidence 11 011 799999999999999999873
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-19 Score=185.58 Aligned_cols=102 Identities=26% Similarity=0.530 Sum_probs=83.4
Q ss_pred cccccceEec-CCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLN-EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++ .++.+|++|||+++..... ......++..|+|||......+ +.++|||||||++|||+||+.|+.
T Consensus 174 Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~ 250 (320)
T 3a99_A 174 DIKDENILIDLNRGELKLIDFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFE 250 (320)
T ss_dssp CCSGGGEEEETTTTEEEECCCTTCEECCSS---CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCHHHEEEeCCCCCEEEeeCccccccccc---cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCC
Confidence 9999999999 7799999999999876532 1234567889999997765554 678999999999999999999986
Q ss_pred CC-------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PK-------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~-------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. +.+ .+++.+||+.+|++|||+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll 292 (320)
T 3a99_A 251 HDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQ 292 (320)
T ss_dssp SHHHHHHCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred ChhhhhcccccccccCCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 21 111 1899999999999999999873
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=190.63 Aligned_cols=103 Identities=21% Similarity=0.344 Sum_probs=77.2
Q ss_pred cccccceEecCC---ccEEEeecCCccccCCCCCcceecccccccccCccccC---CCCCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNED---FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~---~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||+||+++.+ ..+|++|||+++.... ........+|.+|+|||... ...++.++||||+||++|||+||+
T Consensus 264 Dlkp~NIll~~~~~~~~~kl~DFG~a~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~ 341 (419)
T 3i6u_A 264 DLKPENVLLSSQEEDCLIKITDFGHSKILGE--TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGY 341 (419)
T ss_dssp CCCGGGEEESSSSSSCCEEECCSSTTTSCC-------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSS
T ss_pred CCChHhEEEecCCCcceEEEeecccceecCC--CccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCC
Confidence 999999999744 4699999999987643 22233467889999999864 366788999999999999999999
Q ss_pred CCCCCC----------------cch----------HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGPK----------------FED----------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~~----------------~~~----------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+... +.. .+++.+|++.+|++|||++|++
T Consensus 342 ~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l 398 (419)
T 3i6u_A 342 PPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEAL 398 (419)
T ss_dssp CSSCCCSSSCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred CCCCCCcchHHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHh
Confidence 998621 000 0799999999999999999863
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=184.76 Aligned_cols=105 Identities=24% Similarity=0.325 Sum_probs=71.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-----------eecccccccccCcccc---CCCCCCchhhHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-----------STDVASAISYVPPEYG---RARKANERDNIYRFGVV 690 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-----------~~~~~~~~~y~ape~~---~~~~~~~~~Dv~s~G~v 690 (729)
|+||+||+++.++.+||+|||+++......... .....++..|+|||.. ....++.++|||||||+
T Consensus 163 Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~i 242 (337)
T 3ll6_A 163 DLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCI 242 (337)
T ss_dssp CCCGGGCEECTTSCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHH
T ss_pred cCCcccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHH
Confidence 999999999999999999999998765322111 1134578899999987 45678899999999999
Q ss_pred HHHHHhCCCCCCCCc-----------c--------hHHHHhhcccCCCCCCCCccccC
Q 046589 691 LLELVIRKQPTGPKF-----------E--------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 691 l~el~tg~~p~~~~~-----------~--------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+|||+||+.|+...- . -.+++..|++.+|++|||++|++
T Consensus 243 l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l 300 (337)
T 3ll6_A 243 LYLLCFRQHPFEDGAKLRIVNGKYSIPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVV 300 (337)
T ss_dssp HHHHHHSSCCC------------CCCCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHH
T ss_pred HHHHHhCCCCCcchhHHHhhcCcccCCcccccchHHHHHHHHHccCChhhCcCHHHHH
Confidence 999999999976210 0 11899999999999999999873
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-18 Score=187.25 Aligned_cols=105 Identities=27% Similarity=0.381 Sum_probs=84.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc--ceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++.+|++|||+++........ ......+|.+|+|||... ...++.++||||+||++|||+||+.|+
T Consensus 153 Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf 232 (364)
T 3qyz_A 153 DLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF 232 (364)
T ss_dssp CCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSS
T ss_pred CCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999876532211 123457889999999754 455899999999999999999999998
Q ss_pred CCCc--------------------------------------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPKF--------------------------------------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~--------------------------------------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
...- .. .+++.+|+..+|++|||++|++
T Consensus 233 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 312 (364)
T 3qyz_A 233 PGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 312 (364)
T ss_dssp CCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHh
Confidence 5310 00 1799999999999999999873
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-19 Score=190.03 Aligned_cols=105 Identities=30% Similarity=0.507 Sum_probs=74.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC---cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhC-CCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS---HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIR-KQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~---~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg-~~p 700 (729)
|+||+||+++.++.+|++|||+++....... .......++..|+|||......++.++|||||||++|||+|| ..|
T Consensus 217 Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p 296 (373)
T 3c1x_A 217 DLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPP 296 (373)
T ss_dssp CCCGGGEEECTTCCEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred ccchheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999999986543211 112234567789999988888899999999999999999995 444
Q ss_pred CCCC--c------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPK--F------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~--~------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+... . .. .+++..||..+|++|||+++++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell 347 (373)
T 3c1x_A 297 YPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELV 347 (373)
T ss_dssp CTTSCSSCHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 4310 0 00 1799999999999999999873
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-18 Score=181.62 Aligned_cols=105 Identities=28% Similarity=0.492 Sum_probs=84.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCC---CcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCK---SHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~---~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++.+|++|||+++...... ........++..|+|||......++.++||||+||++|||+||+.|+
T Consensus 149 dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~ 228 (298)
T 3pls_A 149 DLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPP 228 (298)
T ss_dssp CCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCT
T ss_pred CCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCC
Confidence 999999999999999999999998654211 11122346678899999988888999999999999999999977775
Q ss_pred CCCcc---------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPKFE---------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~~---------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..... +. +++..|++.+|.+|||+++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll 279 (298)
T 3pls_A 229 YRHIDPFDLTHFLAQGRRLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLV 279 (298)
T ss_dssp TTTSCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CccCCHHHHHHHhhcCCCCCCCccchHHHHHHHHHHccCChhhCcCHHHHH
Confidence 42111 11 799999999999999999863
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-18 Score=186.86 Aligned_cols=101 Identities=25% Similarity=0.294 Sum_probs=81.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++.... ......++.+|+|||.... ..++.++||||+||++|||+||+.|+..
T Consensus 169 Dikp~NIll~~~~~~kL~Dfg~a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~ 244 (371)
T 4exu_A 169 DLKPGNLAVNEDCELKILDFGLARHADA----EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKG 244 (371)
T ss_dssp CCCGGGEEECTTCCEEECSTTCC------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CcCHHHeEECCCCCEEEEecCccccccc----CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999986542 1234567899999998765 6789999999999999999999999863
Q ss_pred Cc--------------------------------------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KF--------------------------------------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--------------------------------------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.- .+ .+++..|++.+|++|||++|++
T Consensus 245 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 322 (371)
T 4exu_A 245 KDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQAL 322 (371)
T ss_dssp SSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHH
T ss_pred CChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHh
Confidence 10 01 1799999999999999999863
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.5e-19 Score=196.89 Aligned_cols=134 Identities=24% Similarity=0.432 Sum_probs=113.6
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|.....||.|+||.||+|+.. +|+.||||.
T Consensus 184 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 263 (576)
T 2acx_A 184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVL 263 (576)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEE
Confidence 56777788999999999999985 889999995
Q ss_pred -----------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcc
Q 046589 625 -----------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHI 657 (729)
Q Consensus 625 -----------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~ 657 (729)
|+||+||+++.++++||+|||+++...... .
T Consensus 264 Ey~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~--~ 341 (576)
T 2acx_A 264 TLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ--T 341 (576)
T ss_dssp CCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTC--C
T ss_pred EcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceecccCc--c
Confidence 999999999999999999999998765322 2
Q ss_pred eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCc---c--------------------h--HHHHh
Q 046589 658 STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKF---E--------------------D--KDIVV 712 (729)
Q Consensus 658 ~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~---~--------------------~--~~l~~ 712 (729)
.....||.+|+|||......++.++||||+||++|||+||+.|+...- . . .+++.
T Consensus 342 ~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~~p~~~s~~~~dLI~ 421 (576)
T 2acx_A 342 IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYSERFSPQARSLCS 421 (576)
T ss_dssp EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHH
T ss_pred ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccccCCccCCHHHHHHHH
Confidence 334578999999999888888999999999999999999999987410 0 0 17999
Q ss_pred hcccCCCCCCC-----Ccccc
Q 046589 713 GCVSDNPIAKP-----GMLRV 728 (729)
Q Consensus 713 ~c~~~~p~~Rp-----~~~~v 728 (729)
+|+..+|++|| +++||
T Consensus 422 ~lL~~dP~~R~g~~~~sa~ei 442 (576)
T 2acx_A 422 QLLCKDPAERLGCRGGSAREV 442 (576)
T ss_dssp HHTCSSGGGSTTCSSSHHHHH
T ss_pred HhccCCHHHcCCCCCCCHHHH
Confidence 99999999999 55654
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=181.53 Aligned_cols=103 Identities=28% Similarity=0.479 Sum_probs=76.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-----CCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-----ARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-----~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+||+||+++.++.+|++|||+++...... ......++..|+|||... ...++.++|||||||++|||+||+.
T Consensus 150 dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~ 227 (318)
T 2dyl_A 150 DVKPSNILLDERGQIKLCDFGISGRLVDDK--AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQF 227 (318)
T ss_dssp CCCGGGEEECTTSCEEECCCTTC----------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCHHHEEECCCCCEEEEECCCchhccCCc--cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCC
Confidence 999999999999999999999997654321 122446788999999873 4567889999999999999999999
Q ss_pred CCCC-C----------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGP-K----------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~-~----------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.. . +.. .+++..|++.+|++||++++++
T Consensus 228 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll 282 (318)
T 2dyl_A 228 PYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLL 282 (318)
T ss_dssp TTTTCCSHHHHHHHHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHT
T ss_pred CCCCCCccHHHHHHHhccCCCCCCccCCCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence 9863 1 011 1799999999999999999875
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-19 Score=186.00 Aligned_cols=105 Identities=26% Similarity=0.469 Sum_probs=79.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc---eecccccccccCccccCCCCCCch------hhHHHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI---STDVASAISYVPPEYGRARKANER------DNIYRFGVVLLELV 695 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~---~~~~~~~~~y~ape~~~~~~~~~~------~Dv~s~G~vl~el~ 695 (729)
|+||+||+++.++.+|++|||+++......... .....++.+|+|||.........+ +|||||||++|||+
T Consensus 167 Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~ 246 (337)
T 3mdy_A 167 DLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVA 246 (337)
T ss_dssp CCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHH
Confidence 899999999999999999999997754322211 123468899999998766555444 99999999999999
Q ss_pred hC----------CCCCCCC----------------------cc----h-------HHHHhhcccCCCCCCCCccccC
Q 046589 696 IR----------KQPTGPK----------------------FE----D-------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 696 tg----------~~p~~~~----------------------~~----~-------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|| +.|+... +. . .+++..||+.+|++|||+++|+
T Consensus 247 tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell 323 (337)
T 3mdy_A 247 RRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVK 323 (337)
T ss_dssp TTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred hccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHH
Confidence 99 5554310 00 0 0699999999999999999873
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-18 Score=186.79 Aligned_cols=101 Identities=26% Similarity=0.318 Sum_probs=75.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++.... ......+|.+|+|||...+ ..++.++||||+||++|||+||+.|+..
T Consensus 157 Dlkp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~ 232 (367)
T 2fst_X 157 DLKPSNLAVNEDCELKILDFGLARHTAD----EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPG 232 (367)
T ss_dssp CCCGGGEEECTTCCEEECC-------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CCCHhhEEECCCCCEEEeeccccccccc----cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999987542 1234577899999998765 6789999999999999999999999853
Q ss_pred Cc--------------------------------------------------c--hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KF--------------------------------------------------E--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--------------------------------------------------~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.- . ..+++.+|+..+|++|||+++++
T Consensus 233 ~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L 310 (367)
T 2fst_X 233 TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQAL 310 (367)
T ss_dssp SSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHh
Confidence 10 0 01689999999999999998863
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=183.06 Aligned_cols=74 Identities=27% Similarity=0.365 Sum_probs=64.0
Q ss_pred cccccceEecC-------------------CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHH
Q 046589 625 DIKASNILLNE-------------------DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIY 685 (729)
Q Consensus 625 dlk~~nill~~-------------------~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~ 685 (729)
|+||+||+++. ++.+|++|||+++..... .....++.+|+|||......++.++|||
T Consensus 143 Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~ 218 (339)
T 1z57_A 143 DLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEH----HSTLVSTRHYRAPEVILALGWSQPCDVW 218 (339)
T ss_dssp CCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSC----CCSSCSCGGGCCHHHHTTSCCCTHHHHH
T ss_pred CCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCccc----cccccCCccccChHHhhCCCCCcchhhH
Confidence 99999999987 667999999999874421 2345678999999998888899999999
Q ss_pred HHHHHHHHHHhCCCCCC
Q 046589 686 RFGVVLLELVIRKQPTG 702 (729)
Q Consensus 686 s~G~vl~el~tg~~p~~ 702 (729)
|+||++|||+||+.|+.
T Consensus 219 slG~il~el~~g~~pf~ 235 (339)
T 1z57_A 219 SIGCILIEYYLGFTVFP 235 (339)
T ss_dssp HHHHHHHHHHHSSCSCC
T ss_pred HHHHHHHHHHhCCCCCC
Confidence 99999999999999985
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-18 Score=185.12 Aligned_cols=104 Identities=27% Similarity=0.339 Sum_probs=84.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++...... .......++.+|+|||...+ ..++.++||||+||++|||++|+.|+..
T Consensus 137 Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~ 215 (346)
T 1ua2_A 137 DLKPNNLLLDENGVLKLADFGLAKSFGSPN-RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPG 215 (346)
T ss_dssp CCCGGGEEECTTCCEEECCCGGGSTTTSCC-CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CCCHHHEEEcCCCCEEEEecccceeccCCc-ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCC
Confidence 999999999999999999999998764321 22334577899999998754 4578999999999999999999988642
Q ss_pred --------------------Ccc---------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 --------------------KFE---------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 --------------------~~~---------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|. + .+++..|+..+|++|||++|++
T Consensus 216 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 290 (346)
T 1ua2_A 216 DSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQAL 290 (346)
T ss_dssp SSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHH
T ss_pred CCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHh
Confidence 111 0 1699999999999999999873
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=177.80 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=83.8
Q ss_pred cccccceEe---cCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILL---NEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill---~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||++ +.++.++++|||++....... ......++.+|+|||...+ .++.++||||+||++|||+||+.|+
T Consensus 131 dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~--~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~ 207 (277)
T 3f3z_A 131 DLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK--MMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPF 207 (277)
T ss_dssp CCSGGGEEESSSSTTCCEEECCCTTCEECCTTS--CBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred CCCHHHEEEecCCCCCcEEEEecccceeccCcc--chhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCC
Confidence 999999999 788999999999998765322 2234567889999998754 4899999999999999999999998
Q ss_pred CCCcc-----------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPKFE-----------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~~-----------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
...-. + .+++..|++.+|++|||+.+++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l 260 (277)
T 3f3z_A 208 SAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQAL 260 (277)
T ss_dssp CCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHT
T ss_pred CCCCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 63110 0 1799999999999999999875
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-18 Score=178.93 Aligned_cols=102 Identities=23% Similarity=0.396 Sum_probs=85.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||++...... ......++..|+|||......++.++||||+||++|||++|+.|+...
T Consensus 139 dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 215 (284)
T 2vgo_A 139 DIKPENLLMGYKGELKIADFGWSVHAPSL---RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP 215 (284)
T ss_dssp CCSGGGEEECTTCCEEECCCTTCEECSSS---CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred CCCHHHEEEcCCCCEEEecccccccCccc---ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCC
Confidence 99999999999999999999998765421 122456788999999988888899999999999999999999998631
Q ss_pred c-------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 705 F-------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~-------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
- .. .+++..|+..+|++|||+++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll 261 (284)
T 2vgo_A 216 SHTETHRRIVNVDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVM 261 (284)
T ss_dssp SHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CHhHHHHHHhccccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHh
Confidence 0 01 1799999999999999999863
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=164.38 Aligned_cols=155 Identities=18% Similarity=0.204 Sum_probs=138.5
Q ss_pred CcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCC-ccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEcc
Q 046589 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLP-SQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209 (729)
Q Consensus 131 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 209 (729)
-+++++++|.++.++. .+ ...+++|+|++|+|++..| ..|..+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 13 ~~~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3689999999988653 33 2467999999999997755 458999999999999999998888899999999999999
Q ss_pred CCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeecccccccccc
Q 046589 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGS 289 (729)
Q Consensus 210 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~ 289 (729)
+|.+++..+..|..+++|++|+|++|.+++ ++...|..+++|++|+|++|++++..|..|..+++|+.+++++|.+.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999998888889999999999999999984 5557889999999999999999998899999999999999999998754
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-18 Score=187.60 Aligned_cols=76 Identities=29% Similarity=0.380 Sum_probs=57.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++..... .......++.+|+|||......++.++||||+||++|||+||+.|+.
T Consensus 152 Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~ 227 (371)
T 2xrw_A 152 DLKPSNIVVKSDCTLKILDFGLARTAGTS--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFP 227 (371)
T ss_dssp CCCGGGEEECTTSCEEECCCCC------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred cCCHHHEEEcCCCCEEEEEeecccccccc--cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999875421 12234577889999999888889999999999999999999999975
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.9e-19 Score=185.40 Aligned_cols=136 Identities=24% Similarity=0.400 Sum_probs=104.8
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
+.|.....+|+|+||+||+|+. .+|+.||||.
T Consensus 34 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 113 (329)
T 3gbz_A 34 DRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFE 113 (329)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEEe
Confidence 4667778899999999999986 4788999995
Q ss_pred -------------------------------------------cccccceEe-----cCCccEEEeecCCccccCCCCCc
Q 046589 625 -------------------------------------------DIKASNILL-----NEDFDAKVLDFGLARLISDCKSH 656 (729)
Q Consensus 625 -------------------------------------------dlk~~nill-----~~~~~~kl~dfgl~~~~~~~~~~ 656 (729)
|+||+||++ +..+.+|++|||+++...... .
T Consensus 114 ~~~~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~-~ 192 (329)
T 3gbz_A 114 YAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPI-R 192 (329)
T ss_dssp CCSEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----
T ss_pred cCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcc-c
Confidence 999999999 455669999999998754321 1
Q ss_pred ceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCCC--------------------c----------
Q 046589 657 ISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGPK--------------------F---------- 705 (729)
Q Consensus 657 ~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~~--------------------~---------- 705 (729)
......++.+|+|||.... ..++.++||||+||++|||+||+.|+... |
T Consensus 193 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (329)
T 3gbz_A 193 QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWK 272 (329)
T ss_dssp -------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCC
T ss_pred ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhh
Confidence 2234567889999998765 45799999999999999999999997521 0
Q ss_pred -------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 706 -------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 706 -------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.++ +++.+|++.+|++|||++|++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 317 (329)
T 3gbz_A 273 QSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNAL 317 (329)
T ss_dssp TTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred hhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 001 799999999999999999874
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-18 Score=184.54 Aligned_cols=75 Identities=24% Similarity=0.332 Sum_probs=64.7
Q ss_pred cccccceEe-------------------cCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHH
Q 046589 625 DIKASNILL-------------------NEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIY 685 (729)
Q Consensus 625 dlk~~nill-------------------~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~ 685 (729)
|+||+||++ +.++.+|++|||+++..... .....++.+|+|||......++.++|||
T Consensus 148 Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~ 223 (355)
T 2eu9_A 148 DLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEH----HTTIVATRHYRPPEVILELGWAQPCDVW 223 (355)
T ss_dssp CCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSC----CCSSCSCGGGCCHHHHTTCCCCTHHHHH
T ss_pred CCCHHHEEEecccccccccccccccccccCCCcEEEeecCcccccccc----ccCCcCCCcccCCeeeecCCCCCccchH
Confidence 999999999 56789999999999874421 2345678999999998888899999999
Q ss_pred HHHHHHHHHHhCCCCCCC
Q 046589 686 RFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 686 s~G~vl~el~tg~~p~~~ 703 (729)
|+||++|||+||+.|+..
T Consensus 224 slG~il~el~~g~~pf~~ 241 (355)
T 2eu9_A 224 SIGCILFEYYRGFTLFQT 241 (355)
T ss_dssp HHHHHHHHHHHSSCSCCC
T ss_pred HHHHHHHHHHhCCCCCCC
Confidence 999999999999999863
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.9e-19 Score=201.09 Aligned_cols=105 Identities=23% Similarity=0.374 Sum_probs=81.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce--ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS--TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~--~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||+||+++.++.+||+|||+++.......... ....++..|+|||......++.++|||||||++|||+| |+.|+
T Consensus 461 Dlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf 540 (613)
T 2ozo_A 461 NLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPY 540 (613)
T ss_dssp CCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred cCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence 9999999999999999999999987643221111 12344578999998887889999999999999999998 99997
Q ss_pred CCCcc--------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPKFE--------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~~--------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
...-. +. +++..||..+|++||+|++|+
T Consensus 541 ~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~ 590 (613)
T 2ozo_A 541 KKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVE 590 (613)
T ss_dssp TTCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 63100 11 799999999999999999863
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-18 Score=186.98 Aligned_cols=107 Identities=29% Similarity=0.496 Sum_probs=91.2
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+.|.....+|.|+||.||+|... +|..||+|.
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 112 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH 112 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence 56777788999999999999985 788999985
Q ss_pred --------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceec
Q 046589 625 --------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTD 660 (729)
Q Consensus 625 --------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~ 660 (729)
|+||+||+++.++.+|++|||+++..... ....
T Consensus 113 ~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~ 189 (360)
T 3eqc_A 113 MDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS---MANS 189 (360)
T ss_dssp CTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH---C---
T ss_pred CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc---cccC
Confidence 99999999999999999999998764321 1223
Q ss_pred ccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 661 VASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 661 ~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
..++.+|+|||......++.++||||+||++|||+||+.|+.
T Consensus 190 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 231 (360)
T 3eqc_A 190 FVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIP 231 (360)
T ss_dssp -CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSS
T ss_pred CCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 467889999999888889999999999999999999999975
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-19 Score=187.37 Aligned_cols=136 Identities=23% Similarity=0.348 Sum_probs=110.6
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+.|.....||.|+||.||+|... +|+.||||.
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~gg 101 (342)
T 2qr7_A 22 DGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGG 101 (342)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred ccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCCC
Confidence 45667778999999999999985 788999996
Q ss_pred ---------------------------------------cccccceEecCC----ccEEEeecCCccccCCCCCcceecc
Q 046589 625 ---------------------------------------DIKASNILLNED----FDAKVLDFGLARLISDCKSHISTDV 661 (729)
Q Consensus 625 ---------------------------------------dlk~~nill~~~----~~~kl~dfgl~~~~~~~~~~~~~~~ 661 (729)
|+||+||++..+ +.+|++|||+++...... ......
T Consensus 102 ~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~ 180 (342)
T 2qr7_A 102 ELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAEN-GLLMTP 180 (342)
T ss_dssp BHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTT-CCBCCS
T ss_pred cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCC-Cceecc
Confidence 999999998432 369999999998765322 222345
Q ss_pred cccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----------------------cc---h--HHHHhh
Q 046589 662 ASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK-----------------------FE---D--KDIVVG 713 (729)
Q Consensus 662 ~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~-----------------------~~---~--~~l~~~ 713 (729)
.+|..|+|||......++.++||||+||++|||++|+.|+... |. + .+++..
T Consensus 181 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~ 260 (342)
T 2qr7_A 181 CYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSK 260 (342)
T ss_dssp SCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHH
T ss_pred CCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHHHHHHH
Confidence 7789999999877667888999999999999999999998631 10 1 179999
Q ss_pred cccCCCCCCCCccccC
Q 046589 714 CVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 714 c~~~~p~~Rp~~~~v~ 729 (729)
|+..+|++|||+++++
T Consensus 261 ~L~~dP~~R~t~~~il 276 (342)
T 2qr7_A 261 MLHVDPHQRLTAALVL 276 (342)
T ss_dssp HTCSSTTTSCCHHHHT
T ss_pred HCCCChhHCcCHHHHh
Confidence 9999999999999874
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-19 Score=187.08 Aligned_cols=105 Identities=11% Similarity=0.214 Sum_probs=86.0
Q ss_pred cccccceEecCCc--cEEEeecCCccccCCCCCc------ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh
Q 046589 625 DIKASNILLNEDF--DAKVLDFGLARLISDCKSH------ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI 696 (729)
Q Consensus 625 dlk~~nill~~~~--~~kl~dfgl~~~~~~~~~~------~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t 696 (729)
|+||+||+++.++ .+|++|||+++........ ......++..|+|||...+..++.++|||||||++|||+|
T Consensus 184 Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~ 263 (352)
T 2jii_A 184 NVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLY 263 (352)
T ss_dssp CCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHh
Confidence 9999999999988 9999999999875432111 1123478889999999888889999999999999999999
Q ss_pred CCCCCCCCc------------------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 697 RKQPTGPKF------------------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 697 g~~p~~~~~------------------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.|+.... .+. +++..|++.+|++|||+++|+
T Consensus 264 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~ 328 (352)
T 2jii_A 264 GFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLR 328 (352)
T ss_dssp SCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHH
T ss_pred CCCCcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHH
Confidence 999986310 111 799999999999999999873
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=171.67 Aligned_cols=170 Identities=28% Similarity=0.304 Sum_probs=143.6
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
+.+++.++++++.+.+. + .+..+++|++|++++|++++..+ +.++++|++|+|++|++++ +| .+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 45688999999988753 3 47889999999999999988665 8899999999999999974 34 489999999999
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 263 (729)
+++|++++. ..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++ ++. +..+++|++|++++|.++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCCcCC
Confidence 999999853 5688999999999999999854 578899999999999999984 442 888999999999999998
Q ss_pred ccCCccccCCCcCCeeccccccccc
Q 046589 264 GNIPPEISHLKKLSDHYLGINQFTG 288 (729)
Q Consensus 264 ~~~p~~l~~l~~L~~l~l~~n~l~~ 288 (729)
+ +| .+..+++|+.++++.|.++.
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred C-Ch-hhccCCCCCEEECcCCcccC
Confidence 5 44 48889999999999998864
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-18 Score=177.28 Aligned_cols=103 Identities=23% Similarity=0.450 Sum_probs=77.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.++++|||+++...... ......++..|+|||......+ +.++||||+||++|||++|+.|+..
T Consensus 136 dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~ 213 (276)
T 2h6d_A 136 DLKPENVLLDAHMNAKIADFGLSNMMSDGE--FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDD 213 (276)
T ss_dssp CCCGGGEEECTTSCEEECCCCGGGCCCC---------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CCChhhEEECCCCCEEEeecccccccCCCc--ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999998754321 1223467889999998876554 6899999999999999999999863
Q ss_pred Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... . .+++..|++.+|++|||+++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l 260 (276)
T 2h6d_A 214 EHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIR 260 (276)
T ss_dssp SSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CcHHHHHHHhhcCcccCchhcCHHHHHHHHHHccCChhhCCCHHHHH
Confidence 111 1 1799999999999999999873
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-18 Score=190.28 Aligned_cols=105 Identities=23% Similarity=0.482 Sum_probs=79.2
Q ss_pred cccccceEecCC-------------ccEEEeecCCccccCCCCCc---ceecccccccccCccccCC-------CCCCch
Q 046589 625 DIKASNILLNED-------------FDAKVLDFGLARLISDCKSH---ISTDVASAISYVPPEYGRA-------RKANER 681 (729)
Q Consensus 625 dlk~~nill~~~-------------~~~kl~dfgl~~~~~~~~~~---~~~~~~~~~~y~ape~~~~-------~~~~~~ 681 (729)
|+||+||+++.+ ..+|++|||+++........ ......+|.+|+|||.... ..++.+
T Consensus 140 DLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~ 219 (434)
T 2rio_A 140 DLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRS 219 (434)
T ss_dssp CCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTH
T ss_pred CCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchh
Confidence 999999999754 48999999999876532211 1224578999999997654 568999
Q ss_pred hhHHHHHHHHHHHHh-CCCCCCCCcc------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 682 DNIYRFGVVLLELVI-RKQPTGPKFE------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 682 ~Dv~s~G~vl~el~t-g~~p~~~~~~------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+|||||||++|||+| |+.|+..... . .+++..|++.+|++|||+++|+
T Consensus 220 ~DiwSlG~il~ellt~g~~Pf~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil 294 (434)
T 2rio_A 220 IDIFSMGCVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVL 294 (434)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTCSTTTHHHHHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred hhhHhHHHHHHHHHhCCCCCCCCchhhHHHHhcCCCCcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHH
Confidence 999999999999999 8888752110 0 1799999999999999999874
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-18 Score=185.59 Aligned_cols=103 Identities=22% Similarity=0.261 Sum_probs=77.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..... .......++.+|+|||.... ..++.++||||+||++|||+||+.|+..
T Consensus 159 Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~ 236 (362)
T 3pg1_A 159 DLHPGNILLADNNDITICDFNLAREDTAD--ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRG 236 (362)
T ss_dssp CCCGGGEEECTTCCEEECCTTC-----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CCChHHEEEcCCCCEEEEecCcccccccc--cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999764422 12234567889999997765 6789999999999999999999999863
Q ss_pred Cc---------------------------------------------------c--hHHHHhhcccCCCCCCCCccccC
Q 046589 704 KF---------------------------------------------------E--DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~---------------------------------------------------~--~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . -.+++..|++.+|++|||++|++
T Consensus 237 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 315 (362)
T 3pg1_A 237 STFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQAL 315 (362)
T ss_dssp SSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHH
Confidence 11 0 01689999999999999999863
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-18 Score=182.03 Aligned_cols=103 Identities=26% Similarity=0.382 Sum_probs=85.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++..... .......++.+|+|||......++.++||||+||++|||+||+.|+...
T Consensus 145 dlkp~Nili~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 222 (326)
T 1blx_A 145 DLKPQNILVTSSGQIKLADFGLARIYSFQ--MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS 222 (326)
T ss_dssp CCCGGGEEECTTCCEEECSCCSCCCCCGG--GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cCCHHHeEEcCCCCEEEecCcccccccCC--CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC
Confidence 99999999999999999999999865421 1223456788999999888888999999999999999999999998531
Q ss_pred --------------------cc--------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 705 --------------------FE--------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 --------------------~~--------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|. + .+++.+|+..+|++|||+++++
T Consensus 223 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l 295 (326)
T 1blx_A 223 SDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSAL 295 (326)
T ss_dssp SHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred CHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence 10 0 1789999999999999998863
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-18 Score=183.41 Aligned_cols=105 Identities=25% Similarity=0.455 Sum_probs=78.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc--eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI--STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~--~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||+||+++.++.+|++|||+++......... .....++..|+|||......++.++|||||||++||++| |+.|+
T Consensus 172 Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf 251 (333)
T 1mqb_A 172 DLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPY 251 (333)
T ss_dssp CCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred CCChheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999998765322111 112345678999998888889999999999999999999 99987
Q ss_pred CCC--------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPK--------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~--------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... .... +++.+||+.+|++||++++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~ 301 (333)
T 1mqb_A 252 WELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIV 301 (333)
T ss_dssp TTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred ccCCHHHHHHHHHCCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 521 0011 799999999999999999863
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-18 Score=182.49 Aligned_cols=105 Identities=25% Similarity=0.418 Sum_probs=85.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++......... .....++.+|+|||......++.++||||+||++|||+| |+.|+.
T Consensus 170 dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~ 249 (313)
T 1t46_A 170 DLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYP 249 (313)
T ss_dssp CCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred CCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999998765433221 223456778999998877888999999999999999999 888875
Q ss_pred C-Ccc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... + .+++.+|++.+|++|||+++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell 299 (313)
T 1t46_A 250 GMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIV 299 (313)
T ss_dssp TCCSSHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred cccchhHHHHHhccCCCCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHH
Confidence 3 110 0 1799999999999999999873
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-18 Score=180.55 Aligned_cols=105 Identities=22% Similarity=0.293 Sum_probs=78.2
Q ss_pred cccccceEecCCcc---EEEeecCCccccCCCCC------cceecccccccccCccccCC-----CCCCchhhHHHHHHH
Q 046589 625 DIKASNILLNEDFD---AKVLDFGLARLISDCKS------HISTDVASAISYVPPEYGRA-----RKANERDNIYRFGVV 690 (729)
Q Consensus 625 dlk~~nill~~~~~---~kl~dfgl~~~~~~~~~------~~~~~~~~~~~y~ape~~~~-----~~~~~~~Dv~s~G~v 690 (729)
|+||+||+++.++. +|++|||+++....... .......++..|+|||.... ..++.++||||+||+
T Consensus 136 dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~i 215 (316)
T 2ac3_A 136 DLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVI 215 (316)
T ss_dssp CCCGGGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHH
T ss_pred CCCHHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHH
Confidence 99999999997765 99999999876542111 11123458899999997653 457889999999999
Q ss_pred HHHHHhCCCCCCCC------cc--------------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 691 LLELVIRKQPTGPK------FE--------------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 691 l~el~tg~~p~~~~------~~--------------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+|||+||+.|+... |. + .+++.+|+..+|++|||++|++
T Consensus 216 l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l 294 (316)
T 2ac3_A 216 LYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVL 294 (316)
T ss_dssp HHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred HHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHh
Confidence 99999999998531 10 0 1799999999999999999873
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-18 Score=190.91 Aligned_cols=134 Identities=28% Similarity=0.418 Sum_probs=109.3
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+.|.....||+|+||+||+|... +|+.||||.
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 101 (486)
T 3mwu_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE 101 (486)
T ss_dssp HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEE
Confidence 45666778999999999999985 888999996
Q ss_pred --------------------------------------------cccccceEec---CCccEEEeecCCccccCCCCCcc
Q 046589 625 --------------------------------------------DIKASNILLN---EDFDAKVLDFGLARLISDCKSHI 657 (729)
Q Consensus 625 --------------------------------------------dlk~~nill~---~~~~~kl~dfgl~~~~~~~~~~~ 657 (729)
|+||+||+++ .++.+|++|||+++..... ..
T Consensus 102 ~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~--~~ 179 (486)
T 3mwu_A 102 LYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN--TK 179 (486)
T ss_dssp CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC----
T ss_pred cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCC--Cc
Confidence 9999999995 4568999999999876432 22
Q ss_pred eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--------------------cc-----hHHHHh
Q 046589 658 STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK--------------------FE-----DKDIVV 712 (729)
Q Consensus 658 ~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~--------------------~~-----~~~l~~ 712 (729)
.....++++|+|||...+ .++.++||||+||++|||++|+.|+... |. -.+++.
T Consensus 180 ~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~ 258 (486)
T 3mwu_A 180 MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIR 258 (486)
T ss_dssp --CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHHH
T ss_pred cCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHHH
Confidence 334578899999998764 5899999999999999999999998621 11 017999
Q ss_pred hcccCCCCCCCCccccC
Q 046589 713 GCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 713 ~c~~~~p~~Rp~~~~v~ 729 (729)
.|+..+|++|||+++++
T Consensus 259 ~~L~~dp~~R~t~~~~l 275 (486)
T 3mwu_A 259 KMLTFHPSLRITATQCL 275 (486)
T ss_dssp HHTCSSTTTSCCHHHHH
T ss_pred HHcCCChhhCcCHHHHh
Confidence 99999999999998863
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-17 Score=162.65 Aligned_cols=154 Identities=21% Similarity=0.222 Sum_probs=138.0
Q ss_pred CcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccC
Q 046589 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSG 210 (729)
Q Consensus 131 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 210 (729)
-+.++.+++.++.++.. + .++|++|+|++|++++..|..|..+++|++|+|++|+++...+..|.++++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 56799999999876643 2 37899999999999988899999999999999999999877677789999999999999
Q ss_pred CCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeecccccccccc
Q 046589 211 NGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGS 289 (729)
Q Consensus 211 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~ 289 (729)
|++++..+..|..+++|++|+|++|.++ .+| ..+..+++|++|+|++|++++..+..+..+++|+.+++++|.+.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9999777778899999999999999998 777 5678999999999999999977777899999999999999998754
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-18 Score=177.73 Aligned_cols=103 Identities=21% Similarity=0.360 Sum_probs=82.5
Q ss_pred cccccceEecCCc----cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDF----DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~----~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++ .+|++|||+++...... ......++..|+|||......++.++||||+||++|||+||+.|
T Consensus 133 dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p 210 (283)
T 3bhy_A 133 DLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGN--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 210 (283)
T ss_dssp CCSGGGEEESCSSSSSCCEEECCCTTCEECC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCChHHEEEecCCCCCCceEEEecccceeccCCC--cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCC
Confidence 9999999998776 89999999998754321 12344678899999988888889999999999999999999999
Q ss_pred CCCC---------------cch----------HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPK---------------FED----------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~---------------~~~----------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+... +.. .+++.+|+..+|++|||+++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l 264 (283)
T 3bhy_A 211 FLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSL 264 (283)
T ss_dssp TCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHH
T ss_pred CCCcchHHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHH
Confidence 7631 000 1799999999999999999863
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-18 Score=179.81 Aligned_cols=104 Identities=20% Similarity=0.381 Sum_probs=82.1
Q ss_pred cccccceEecC-CccEEEeecCCccccCCCCCcceecccccccccCccccCCC--CCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNE-DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR--KANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~--~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++. ++.+|++|||+++...... .......++..|+|||..... .++.++|||||||++|||+||+.|+
T Consensus 147 dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf 225 (295)
T 2clq_A 147 DIKGDNVLINTYSGVLKISDFGTSKRLAGIN-PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPF 225 (295)
T ss_dssp CCSGGGEEEETTTCCEEECCTTTCEESCC------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTT
T ss_pred CCChhhEEEECCCCCEEEeecccccccCCCC-CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCc
Confidence 99999999997 8999999999998754311 112345678899999976543 3788999999999999999999997
Q ss_pred CC-C---------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GP-K---------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~-~---------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . +.+ .+++.+|+..+|++||++++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll 277 (295)
T 2clq_A 226 YELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLL 277 (295)
T ss_dssp GGGSSHHHHHHHHHHHCCCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHH
T ss_pred cCCCchhHHHHhhccccccccccccCCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 52 0 001 1799999999999999999863
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-19 Score=184.09 Aligned_cols=105 Identities=24% Similarity=0.391 Sum_probs=84.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc--ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++........ ......++..|+|||......++.++||||+||++|||+||+.|+.
T Consensus 151 dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~ 230 (302)
T 4e5w_A 151 DLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDS 230 (302)
T ss_dssp CCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred CCchheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCc
Confidence 99999999999999999999999876543221 1223467778999998877788899999999999999999988743
Q ss_pred CC-----------------------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PK-----------------------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~-----------------------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. +.+. +++..|++.+|++|||+++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll 294 (302)
T 4e5w_A 231 SPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLI 294 (302)
T ss_dssp SHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHH
T ss_pred chhhHHhhccCCcccccCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHH
Confidence 10 0011 799999999999999999873
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-18 Score=181.71 Aligned_cols=105 Identities=22% Similarity=0.387 Sum_probs=79.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++........ ......++..|+|||......++.++|||||||++|||+| |+.|+.
T Consensus 172 dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~ 251 (313)
T 3brb_A 172 DLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYP 251 (313)
T ss_dssp CCSGGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred CCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999875432211 1223456778999999888889999999999999999999 777765
Q ss_pred CC-cc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PK-FE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~-~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .. + .+++..|++.+|++|||+++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~ 300 (313)
T 3brb_A 252 GVQNHEMYDYLLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLR 300 (313)
T ss_dssp TCCGGGHHHHHHTTCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 31 00 1 1799999999999999999863
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-18 Score=189.30 Aligned_cols=105 Identities=20% Similarity=0.404 Sum_probs=77.7
Q ss_pred cccccceEecC-----CccEEEeecCCccccCCCCC--cceecccccccccCccccC---CCCCCchhhHHHHHHHHHHH
Q 046589 625 DIKASNILLNE-----DFDAKVLDFGLARLISDCKS--HISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLEL 694 (729)
Q Consensus 625 dlk~~nill~~-----~~~~kl~dfgl~~~~~~~~~--~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el 694 (729)
|+||+||+++. ...+|++|||+|+....... .......+|.+|+|||... ...++.++||||+||++|||
T Consensus 143 DlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~el 222 (432)
T 3p23_A 143 DLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYV 222 (432)
T ss_dssp CCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHH
T ss_pred CCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHH
Confidence 99999999952 34688999999987653221 1223457899999999876 35667899999999999999
Q ss_pred Hh-CCCCCCCCcc------------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 695 VI-RKQPTGPKFE------------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 695 ~t-g~~p~~~~~~------------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+| |+.|+..... -.+++.+|++.+|++|||+++|+
T Consensus 223 lt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl 282 (432)
T 3p23_A 223 ISEGSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVL 282 (432)
T ss_dssp HTTSCBTTBSTTTHHHHHHTTCCCCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred HcCCCCCcchhhHHHHHHHhccCCccccCccccccHHHHHHHHHHHhCCHhhCCCHHHHH
Confidence 99 8888752110 01799999999999999999874
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-18 Score=176.31 Aligned_cols=101 Identities=26% Similarity=0.453 Sum_probs=83.0
Q ss_pred cccccceEec-CCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLN-EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++ .++.+|++|||++...... ......++..|+|||... ..++.++||||+||++|||+||+.|+..
T Consensus 156 dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~ 231 (290)
T 1t4h_A 156 DLKCDNIFITGPTGSVKIGDLGLATLKRAS---FAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSE 231 (290)
T ss_dssp CCCGGGEEESSTTSCEEECCTTGGGGCCTT---SBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred CCCHHHEEEECCCCCEEEeeCCCccccccc---ccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCC
Confidence 9999999998 7899999999999764421 223456788999999775 4589999999999999999999999863
Q ss_pred Ccc----------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KFE----------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~----------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... + .+++..|++.+|++|||+++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell 281 (290)
T 1t4h_A 232 CQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL 281 (290)
T ss_dssp CSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred cCcHHHHHHHHhccCCccccCCCCCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 100 0 1799999999999999999874
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-18 Score=187.12 Aligned_cols=105 Identities=28% Similarity=0.428 Sum_probs=84.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+||+|||+++........ ......++.+|+|||......++.++|||||||++|||+| |+.|+.
T Consensus 218 Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~ 297 (359)
T 3vhe_A 218 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 297 (359)
T ss_dssp CCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred CCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCC
Confidence 46899999999999999999999876432222 2234567889999998878889999999999999999999 998876
Q ss_pred C-Ccc--------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFE--------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~--------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... +. +++..|++.+|++|||+++|+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell 347 (359)
T 3vhe_A 298 GVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELV 347 (359)
T ss_dssp TCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred ccchhHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHH
Confidence 3 111 01 799999999999999999874
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-18 Score=187.82 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=52.5
Q ss_pred cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 638 DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 638 ~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
.+|++|||+++..... .....+|.+|+|||......++.++||||+||++|||+||+.|+.
T Consensus 234 ~~kl~DfG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~ 294 (397)
T 1wak_A 234 KVKIADLGNACWVHKH----FTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFE 294 (397)
T ss_dssp CEEECCGGGCEETTBC----SCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred ceEecccccccccccc----CccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCC
Confidence 7999999999875432 234467899999998888889999999999999999999999986
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-18 Score=185.34 Aligned_cols=105 Identities=20% Similarity=0.359 Sum_probs=85.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++......... .....++..|+|||......++.++|||||||++|||+| |+.|+.
T Consensus 197 Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~ 276 (344)
T 1rjb_A 197 DLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYP 276 (344)
T ss_dssp TCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred CCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcc
Confidence 899999999999999999999998765332222 224466788999998877888999999999999999998 988876
Q ss_pred C-Ccc--------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFE--------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~--------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... +. +++..||+.+|++|||+++|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~ 326 (344)
T 1rjb_A 277 GIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLT 326 (344)
T ss_dssp TCCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred cCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHH
Confidence 3 110 01 799999999999999999863
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-18 Score=179.14 Aligned_cols=105 Identities=24% Similarity=0.372 Sum_probs=84.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc--eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI--STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~--~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||+||+++.++.+|++|||+++......... .....++..|+|||......++.++||||+||++|||+| |+.|+
T Consensus 135 dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~ 214 (287)
T 1u59_A 135 DLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPY 214 (287)
T ss_dssp CCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred CCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999998765322211 112345788999998877778999999999999999999 99997
Q ss_pred CCC-c-------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPK-F-------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~-~-------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... . .+. +++..|+..+|++||++++++
T Consensus 215 ~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~ 264 (287)
T 1u59_A 215 KKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVE 264 (287)
T ss_dssp TTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHH
T ss_pred ccCCHHHHHHHHhcCCcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 631 0 011 799999999999999999863
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-18 Score=182.41 Aligned_cols=105 Identities=26% Similarity=0.394 Sum_probs=83.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-----------cceecccccccccCccccCCCCCCchhhHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-----------HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLE 693 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-----------~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~e 693 (729)
|+||+||+++.++.+|++|||+++....... .......+|..|+|||......++.++||||+||++||
T Consensus 189 Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~e 268 (332)
T 3qd2_B 189 DLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFE 268 (332)
T ss_dssp CCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHH
T ss_pred CCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHH
Confidence 8999999999999999999999987653221 11123468899999998888889999999999999999
Q ss_pred HHhCCCCCCC-----------Ccc---------hHHHHhhcccCCCCCCCCccccC
Q 046589 694 LVIRKQPTGP-----------KFE---------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 694 l~tg~~p~~~-----------~~~---------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|++|..|... .+. ..+++..|++.+|++|||++|++
T Consensus 269 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l 324 (332)
T 3qd2_B 269 LLYSFSTQMERVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDII 324 (332)
T ss_dssp HHSCCCCHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHH
T ss_pred HHHcCCChhHHHHHHHHhhccCCCcccccCChhHHHHHHHHccCCCCcCCCHHHHh
Confidence 9999877431 111 01799999999999999999874
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-18 Score=183.75 Aligned_cols=105 Identities=25% Similarity=0.403 Sum_probs=84.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++........ ......++..|+|||......++.++|||||||++|||+| |+.|+.
T Consensus 182 Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~ 261 (334)
T 2pvf_A 182 DLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP 261 (334)
T ss_dssp CCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred CCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcC
Confidence 99999999999999999999999876532211 1123355678999998877778999999999999999999 888875
Q ss_pred CC-cc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PK-FE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~-~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .. . .+++..||+.+|++|||+++++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell 310 (334)
T 2pvf_A 262 GIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLV 310 (334)
T ss_dssp TCCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred cCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 31 10 0 1799999999999999999873
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-18 Score=185.09 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=63.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC------cceecccccccccCccccCC--CCCCchhhHHHHHHHHHHHHh
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS------HISTDVASAISYVPPEYGRA--RKANERDNIYRFGVVLLELVI 696 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~------~~~~~~~~~~~y~ape~~~~--~~~~~~~Dv~s~G~vl~el~t 696 (729)
|+||+||+++.++.+|++|||.+........ .......++.+|+|||.... ..++.++||||+||++|||+|
T Consensus 153 Dlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~ 232 (389)
T 3gni_B 153 SVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELAN 232 (389)
T ss_dssp CCSGGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHH
Confidence 9999999999999999999998765432110 11112467888999998765 678999999999999999999
Q ss_pred CCCCCC
Q 046589 697 RKQPTG 702 (729)
Q Consensus 697 g~~p~~ 702 (729)
|+.|+.
T Consensus 233 g~~pf~ 238 (389)
T 3gni_B 233 GHVPFK 238 (389)
T ss_dssp SSCTTT
T ss_pred CCCCCC
Confidence 999985
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-18 Score=178.25 Aligned_cols=101 Identities=26% Similarity=0.483 Sum_probs=78.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..... .....++..|+|||......++.++||||+||++|||+| |+.|+..
T Consensus 142 dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~ 217 (278)
T 1byg_A 142 DLAARNVLVSEDNVAKVSDFGLTKEASST----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR 217 (278)
T ss_dssp CCSGGGEEECTTSCEEECCCCC----------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTT
T ss_pred CCCcceEEEeCCCcEEEeecccccccccc----ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999998765421 122355778999998877888999999999999999999 9888753
Q ss_pred -Ccc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 -KFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... + .+++..|++.+|++|||+++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~ 265 (278)
T 1byg_A 218 IPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLR 265 (278)
T ss_dssp SCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHH
Confidence 111 0 1799999999999999999863
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-18 Score=180.72 Aligned_cols=137 Identities=22% Similarity=0.377 Sum_probs=108.7
Q ss_pred CcccccccCCCCCCcceEEEeecC-CCCceeeec----------------------------------------------
Q 046589 592 NNKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK---------------------------------------------- 624 (729)
Q Consensus 592 ~~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~---------------------------------------------- 624 (729)
.+.|.....+|+|+||.||+|... +|+.||+|.
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 97 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF 97 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence 356777788999999999999986 688999985
Q ss_pred --------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceec
Q 046589 625 --------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTD 660 (729)
Q Consensus 625 --------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~ 660 (729)
|+||+||+++.++.+|++|||++...... ......
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~ 176 (302)
T 2j7t_A 98 CPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT-LQKRDS 176 (302)
T ss_dssp CTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH-HHC---
T ss_pred CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCcccccc-cccccc
Confidence 99999999999999999999987543210 011123
Q ss_pred ccccccccCcccc-----CCCCCCchhhHHHHHHHHHHHHhCCCCCCCCc----------------------ch--HHHH
Q 046589 661 VASAISYVPPEYG-----RARKANERDNIYRFGVVLLELVIRKQPTGPKF----------------------ED--KDIV 711 (729)
Q Consensus 661 ~~~~~~y~ape~~-----~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~----------------------~~--~~l~ 711 (729)
..++..|+|||.. ....++.++|||||||++|||+||+.|+.... .. .+++
T Consensus 177 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li 256 (302)
T 2j7t_A 177 FIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFL 256 (302)
T ss_dssp --CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHH
T ss_pred ccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcccCCccccCHHHHHHH
Confidence 4678899999976 35678899999999999999999999976310 01 1799
Q ss_pred hhcccCCCCCCCCccccC
Q 046589 712 VGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 712 ~~c~~~~p~~Rp~~~~v~ 729 (729)
..|++.+|++|||+++++
T Consensus 257 ~~~l~~dp~~Rps~~~ll 274 (302)
T 2j7t_A 257 KIALDKNPETRPSAAQLL 274 (302)
T ss_dssp HHHSCSCTTTSCCHHHHT
T ss_pred HHHcccChhhCCCHHHHh
Confidence 999999999999999875
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-18 Score=185.83 Aligned_cols=105 Identities=26% Similarity=0.403 Sum_probs=83.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++....... .......++..|+|||......++.++|||||||++|||+| |+.|+.
T Consensus 199 Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~ 278 (343)
T 1luf_A 199 DLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYY 278 (343)
T ss_dssp CCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred CCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCC
Confidence 8999999999999999999999986542211 11223466788999998877789999999999999999999 988876
Q ss_pred CCcc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PKFE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.... . .+++..||+.+|++|||+++|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~ 327 (343)
T 1luf_A 279 GMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIH 327 (343)
T ss_dssp TSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCChHHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHH
Confidence 3110 1 1799999999999999999863
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=171.14 Aligned_cols=161 Identities=27% Similarity=0.387 Sum_probs=117.7
Q ss_pred EcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCC
Q 046589 111 VLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFT 190 (729)
Q Consensus 111 ~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~ 190 (729)
.+....+.+.. .+..+++|++|++++|.+.... .+..+++|++|+|++|++++..| ++.+++|++|++++|+++
T Consensus 30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred HhcCCCccccc--chhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence 34445555432 2346788999999999988763 47888999999999999985443 888999999999999887
Q ss_pred ccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccc
Q 046589 191 GEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI 270 (729)
Q Consensus 191 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 270 (729)
+ + ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..| +
T Consensus 104 ~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 104 D-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp C-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred C-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c--hhhccCCCCCEEEccCCccccchh--h
Confidence 4 3 3488888999999999888753 457788888888888888874 3 457778888888888887764332 5
Q ss_pred cCCCcCCeeccccccc
Q 046589 271 SHLKKLSDHYLGINQF 286 (729)
Q Consensus 271 ~~l~~L~~l~l~~n~l 286 (729)
..+++|+.++++.|.+
T Consensus 175 ~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHI 190 (291)
T ss_dssp TTCTTCCEEECCSSCC
T ss_pred cCCCccCEEECCCCcC
Confidence 5555555555544443
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-18 Score=200.55 Aligned_cols=105 Identities=24% Similarity=0.383 Sum_probs=82.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC--cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS--HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~--~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||+||+++.++.+||+|||+++....... .......++..|+|||......++.++|||||||++|||+| |+.|+
T Consensus 494 DLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf 573 (635)
T 4fl3_A 494 DLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPY 573 (635)
T ss_dssp CCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred CCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999987653222 11223355678999999888889999999999999999999 99998
Q ss_pred CCCcc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPKFE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
...-. + .+++..||+.+|++|||+++|+
T Consensus 574 ~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~ 623 (635)
T 4fl3_A 574 RGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVE 623 (635)
T ss_dssp TTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHH
Confidence 63100 0 1799999999999999999873
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-18 Score=179.12 Aligned_cols=134 Identities=24% Similarity=0.383 Sum_probs=111.4
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+.|.....+|+|+||.||+|+.. +|+.||||.
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 88 (304)
T 2jam_A 9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLV 88 (304)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcC
Confidence 35566778999999999999975 788999985
Q ss_pred ------------------------------------------cccccceEe---cCCccEEEeecCCccccCCCCCccee
Q 046589 625 ------------------------------------------DIKASNILL---NEDFDAKVLDFGLARLISDCKSHIST 659 (729)
Q Consensus 625 ------------------------------------------dlk~~nill---~~~~~~kl~dfgl~~~~~~~~~~~~~ 659 (729)
|+||+||++ +.++.++++|||+++..... ...
T Consensus 89 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~---~~~ 165 (304)
T 2jam_A 89 SGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG---IMS 165 (304)
T ss_dssp CSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB---TTH
T ss_pred CCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC---ccc
Confidence 999999999 77899999999998764321 122
Q ss_pred cccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC---------------c--------ch--HHHHhhc
Q 046589 660 DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK---------------F--------ED--KDIVVGC 714 (729)
Q Consensus 660 ~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~---------------~--------~~--~~l~~~c 714 (729)
...++.+|+|||......++.++||||+||++|||+||+.|+... + .+ .+++..|
T Consensus 166 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~ 245 (304)
T 2jam_A 166 TACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHL 245 (304)
T ss_dssp HHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHHH
T ss_pred cccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHH
Confidence 346788999999988888999999999999999999999997521 0 01 1799999
Q ss_pred ccCCCCCCCCccccC
Q 046589 715 VSDNPIAKPGMLRVQ 729 (729)
Q Consensus 715 ~~~~p~~Rp~~~~v~ 729 (729)
+..+|++|||+++++
T Consensus 246 l~~dp~~Rps~~~~l 260 (304)
T 2jam_A 246 LEKDPNERYTCEKAL 260 (304)
T ss_dssp HCSSTTTSCCHHHHH
T ss_pred cCCChhHCcCHHHHh
Confidence 999999999999863
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-18 Score=183.66 Aligned_cols=137 Identities=28% Similarity=0.423 Sum_probs=110.4
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
++|.....+|+|+||.||+|... +|+.||||.
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 90 (353)
T 2b9h_A 11 SDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVY 90 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEE
T ss_pred cceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEE
Confidence 46777788999999999999975 788999995
Q ss_pred ----------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCc--
Q 046589 625 ----------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSH-- 656 (729)
Q Consensus 625 ----------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-- 656 (729)
|+||+||+++.++.+|++|||+++........
T Consensus 91 lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~ 170 (353)
T 2b9h_A 91 IIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNS 170 (353)
T ss_dssp EEECCCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC-------
T ss_pred EEEeccCccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEeccccccccccccccc
Confidence 99999999999999999999999875422111
Q ss_pred -------ceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCCCCCc-----------------------
Q 046589 657 -------ISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPTGPKF----------------------- 705 (729)
Q Consensus 657 -------~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~----------------------- 705 (729)
......++.+|+|||... ...++.++||||+||++|||++|+.|+...-
T Consensus 171 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (353)
T 2b9h_A 171 EPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRC 250 (353)
T ss_dssp ---------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTT
T ss_pred CccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccc
Confidence 111246788999999654 4678999999999999999999999975310
Q ss_pred ----------------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 706 ----------------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 706 ----------------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.+ .+++.+|+..+|++|||+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 304 (353)
T 2b9h_A 251 IESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEAL 304 (353)
T ss_dssp CCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred cccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHh
Confidence 00 1799999999999999999874
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-18 Score=182.33 Aligned_cols=105 Identities=28% Similarity=0.435 Sum_probs=85.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++......... .....++.+|+|||......++.++||||+||++|||+| |+.|+.
T Consensus 173 dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~ 252 (316)
T 2xir_A 173 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 252 (316)
T ss_dssp CCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred cCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCc
Confidence 999999999999999999999998765432222 224466788999998877888999999999999999999 988875
Q ss_pred C-Ccc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... + .+++..|++.+|++|||+++|+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell 302 (316)
T 2xir_A 253 GVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELV 302 (316)
T ss_dssp TCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred ccchhHHHHHHhccCccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 3 111 0 1799999999999999999873
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-18 Score=179.44 Aligned_cols=104 Identities=24% Similarity=0.418 Sum_probs=83.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+++...... .......++..|+|||......++.++|||||||++|||+||+.|+...
T Consensus 141 dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~ 219 (279)
T 2w5a_A 141 DLKPANVFLDGKQNVKLGDFGLARILNHDT-SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF 219 (279)
T ss_dssp CCSGGGEEECSSSCEEECCCCHHHHC---C-HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ccchhhEEEcCCCCEEEecCchheeecccc-ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCccc
Confidence 899999999999999999999988754321 1122346788999999887788899999999999999999999997631
Q ss_pred c--------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 705 F--------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~--------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
- .+. +++..|+..+|++|||+++|+
T Consensus 220 ~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll 266 (279)
T 2w5a_A 220 SQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEIL 266 (279)
T ss_dssp SHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CHHHHHHHHhhcccccCCcccCHHHHHHHHHHcCCCcccCCCHHHHH
Confidence 0 011 799999999999999999874
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-18 Score=181.58 Aligned_cols=105 Identities=22% Similarity=0.305 Sum_probs=81.5
Q ss_pred cccccceEecCCc--cEEEeecCCccccCCCCC---cceecccccccccCccccCC--CCCCchhhHHHHHHHHHHHHhC
Q 046589 625 DIKASNILLNEDF--DAKVLDFGLARLISDCKS---HISTDVASAISYVPPEYGRA--RKANERDNIYRFGVVLLELVIR 697 (729)
Q Consensus 625 dlk~~nill~~~~--~~kl~dfgl~~~~~~~~~---~~~~~~~~~~~y~ape~~~~--~~~~~~~Dv~s~G~vl~el~tg 697 (729)
|+||+||+++.++ .+||+|||+++....... .......++..|+|||.... ..++.++|||||||++|||+||
T Consensus 193 Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g 272 (345)
T 3hko_A 193 DIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMG 272 (345)
T ss_dssp CCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHS
T ss_pred CCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHC
Confidence 7899999998766 899999999986542111 11234578899999997653 6788999999999999999999
Q ss_pred CCCCCCC-----------------------cch--HHHHhhcccCCCCCCCCccccC
Q 046589 698 KQPTGPK-----------------------FED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 698 ~~p~~~~-----------------------~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+.|+... +.+ .+++..|++.+|++|||+++++
T Consensus 273 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l 329 (345)
T 3hko_A 273 AVPFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRAL 329 (345)
T ss_dssp SCSSCCSSHHHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHH
T ss_pred CCCCCCCChHHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHHHh
Confidence 9998521 001 1799999999999999999863
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-18 Score=176.23 Aligned_cols=105 Identities=19% Similarity=0.303 Sum_probs=84.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCC--CCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRAR--KANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~--~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++.+|++|||+++....... .......++..|+|||..... .++.++||||+||++|||+||+.|+
T Consensus 134 dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~ 213 (305)
T 2wtk_C 134 DIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPF 213 (305)
T ss_dssp CCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSC
T ss_pred CCCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999987643221 222345678899999977543 3478999999999999999999998
Q ss_pred CCCcc-------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPKFE-------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~~-------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
...-. + .+++.+|+..+|++|||+++++
T Consensus 214 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll 262 (305)
T 2wtk_C 214 EGDNIYKLFENIGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIR 262 (305)
T ss_dssp CCSSHHHHHHHHHHCCCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCchHHHHHHHHhcCCCCCCCccCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 73110 1 1799999999999999999863
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-18 Score=181.65 Aligned_cols=105 Identities=24% Similarity=0.396 Sum_probs=84.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++......... .....++..|+|||...+..++.++||||+||++|||+| |+.|+.
T Consensus 175 dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~ 254 (314)
T 2ivs_A 175 DLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYP 254 (314)
T ss_dssp CCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred ccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999998764322211 123355678999998877788999999999999999999 988876
Q ss_pred CC-cc-------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PK-FE-------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~-~~-------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .. +. +++..|++.+|++|||+++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~ 303 (314)
T 2ivs_A 255 GIPPERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADIS 303 (314)
T ss_dssp TCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHhhcCCcCCCCccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 31 10 11 799999999999999999873
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-18 Score=180.61 Aligned_cols=105 Identities=30% Similarity=0.523 Sum_probs=82.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC---cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS---HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~---~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++.+|++|||+++....... .......++..|+|||......++.++||||+||++||++||+.|+
T Consensus 153 dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~ 232 (298)
T 3f66_A 153 DLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPP 232 (298)
T ss_dssp CCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CCchheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999986543211 1122345677899999887788899999999999999999966654
Q ss_pred CCCc---------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPKF---------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~---------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.... .+. +++..|++.+|++|||+++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell 283 (298)
T 3f66_A 233 YPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELV 283 (298)
T ss_dssp STTSCTTTHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CccCCHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 3210 011 799999999999999999873
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.7e-19 Score=186.16 Aligned_cols=105 Identities=26% Similarity=0.397 Sum_probs=85.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc--eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI--STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~--~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++......... .....++..|+|||......++.++||||+||++|||+||+.|+.
T Consensus 152 Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~ 231 (327)
T 3lxl_A 152 DLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSC 231 (327)
T ss_dssp CCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred CCChhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCc
Confidence 999999999999999999999998765322211 123456778999998877778999999999999999999998864
Q ss_pred CCc-----------------------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PKF-----------------------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~-----------------------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... .+. +++..|++.+|++|||+++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell 295 (327)
T 3lxl_A 232 SPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALG 295 (327)
T ss_dssp SHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred cccchhhhhcccccccccHHHHHHHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 200 011 799999999999999999873
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-18 Score=184.00 Aligned_cols=103 Identities=22% Similarity=0.303 Sum_probs=84.0
Q ss_pred cccccceEec-CCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLN-EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++ .++.+||+|||+|+....... .....++.+|+|||...+ ..++.++||||+||++|||++|+.|+.
T Consensus 166 Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~ 243 (383)
T 3eb0_A 166 DIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP--SVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFS 243 (383)
T ss_dssp CCCGGGEEEETTTTEEEECCCTTCEECCTTSC--CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred ccCHHHEEEcCCCCcEEEEECCCCcccCCCCC--CcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCC
Confidence 9999999998 689999999999987653222 234567889999997665 458999999999999999999999986
Q ss_pred CC----------------------------------------cc----------hHHHHhhcccCCCCCCCCccccC
Q 046589 703 PK----------------------------------------FE----------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~----------------------------------------~~----------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. |. -.+++.+|+..+|++|||++|++
T Consensus 244 ~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 320 (383)
T 3eb0_A 244 GETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAM 320 (383)
T ss_dssp CSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred CCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 31 00 11799999999999999999863
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-18 Score=180.75 Aligned_cols=104 Identities=19% Similarity=0.396 Sum_probs=77.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-----CCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-----ARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-----~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+||+||+++.++.+|++|||++....... .......++..|+|||... ...++.++|||||||++|||+||+.
T Consensus 154 dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~ 232 (326)
T 2x7f_A 154 DIKGQNVLLTENAEVKLVDFGVSAQLDRTV-GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAP 232 (326)
T ss_dssp CCSGGGEEECTTCCEEECCCTTTC--------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSC
T ss_pred CCcHHHEEEcCCCCEEEeeCcCceecCcCc-cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCC
Confidence 999999999999999999999987654211 1122346788999999765 4668899999999999999999999
Q ss_pred CCCCC---------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 700 PTGPK---------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~~---------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+... +.+. +++..|+..+|++|||+++++
T Consensus 233 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll 285 (326)
T 2x7f_A 233 PLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLM 285 (326)
T ss_dssp TTTTSCHHHHHHHHHHSCCCCCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred CCCCCcHHHHHHHhhcCccccCCccccCHHHHHHHHHHhccChhhCCCHHHHh
Confidence 97521 1111 799999999999999999863
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-18 Score=183.99 Aligned_cols=102 Identities=21% Similarity=0.337 Sum_probs=67.5
Q ss_pred cccccceEecC---CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNE---DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++. ++.+|++|||+++..... ......++.+|+|||......++.++||||+||++|||+||+.|+
T Consensus 153 dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf 229 (336)
T 3fhr_A 153 DVKPENLLYTSKEKDAVLKLTDFGFAKETTQN---ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPF 229 (336)
T ss_dssp CCSGGGEEESCSSTTCCEEECCCTTCEEC-------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCHHHEEEEecCCCceEEEeccccceecccc---ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCC
Confidence 99999999985 456999999999865421 123456788999999987788899999999999999999999997
Q ss_pred CCC------------------------c---ch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPK------------------------F---ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~------------------------~---~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... | .+ .+++..|++.+|++|||+++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 286 (336)
T 3fhr_A 230 YSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFM 286 (336)
T ss_dssp ---------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CCccchhhhhhHHHhhhccccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence 520 0 00 1799999999999999999874
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-18 Score=180.64 Aligned_cols=100 Identities=22% Similarity=0.366 Sum_probs=80.9
Q ss_pred cccccceEecCCcc--------EEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFD--------AKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELV 695 (729)
Q Consensus 625 dlk~~nill~~~~~--------~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~ 695 (729)
|+||+||+++.++. +|++|||+++.... .....++.+|+|||.... ..++.++||||+||++|||+
T Consensus 138 Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~ 212 (289)
T 4fvq_A 138 NVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLP-----KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEIC 212 (289)
T ss_dssp CCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSC-----HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHH
T ss_pred CcCcceEEEecCCcccccccceeeeccCcccccccC-----ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHH
Confidence 99999999998876 99999999876432 123456788999998766 67899999999999999999
Q ss_pred hCCCCCCCCcc---------------------hHHHHhhcccCCCCCCCCccccC
Q 046589 696 IRKQPTGPKFE---------------------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 696 tg~~p~~~~~~---------------------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
||+.|+..... -.+++..|++.+|++|||+++++
T Consensus 213 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll 267 (289)
T 4fvq_A 213 SGGDKPLSALDSQRKLQFYEDRHQLPAPKAAELANLINNCMDYEPDHRPSFRAII 267 (289)
T ss_dssp TTTCCTTTTSCHHHHHHHHHTTCCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHHH
T ss_pred cCCCCCccccchHHHHHHhhccCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 97666542111 01799999999999999999873
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-18 Score=183.69 Aligned_cols=105 Identities=24% Similarity=0.406 Sum_probs=84.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc--ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++........ ......++..|+|||......++.++||||+||++|||+||+.|+.
T Consensus 159 Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~ 238 (318)
T 3lxp_A 159 DLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQ 238 (318)
T ss_dssp CCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred CCchheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999876543221 1223456778999998877788899999999999999999998865
Q ss_pred CC---------c--------------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PK---------F--------------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~---------~--------------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. + ... +++..||+.+|++|||+++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell 302 (318)
T 3lxp_A 239 SPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLI 302 (318)
T ss_dssp SHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred ccchhhhhhhcccccchhHHHHHHHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHH
Confidence 21 0 001 799999999999999999874
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-18 Score=181.69 Aligned_cols=101 Identities=24% Similarity=0.316 Sum_probs=81.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..... .....++.+|+|||...+ ..++.++||||+||++|||+||+.|+..
T Consensus 151 dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~ 226 (353)
T 3coi_A 151 DLKPGNLAVNEDCELKILDFGLARHADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKG 226 (353)
T ss_dssp SCCGGGEEECTTCCEEECSTTCTTC------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBS
T ss_pred CCCHHHEeECCCCcEEEeecccccCCCCC----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999764321 234567889999997765 6788999999999999999999999753
Q ss_pred -Cc-------------------------------------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 -KF-------------------------------------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~-------------------------------------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. .. .+++.+|+..+|++|||+++++
T Consensus 227 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l 304 (353)
T 3coi_A 227 KDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQAL 304 (353)
T ss_dssp SCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence 10 00 1799999999999999999863
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-18 Score=176.97 Aligned_cols=103 Identities=24% Similarity=0.400 Sum_probs=85.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP- 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~- 703 (729)
|+||+||+++.++.+|++|||+++...... ......++.+|+|||......++.++|||||||++|||+||+.|+..
T Consensus 147 dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~ 224 (284)
T 2a19_B 147 DLKPSNIFLVDTKQVKIGDFGLVTSLKNDG--KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET 224 (284)
T ss_dssp CCSGGGEEEEETTEEEECCCTTCEESSCCS--CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH
T ss_pred cCCHHHEEEcCCCCEEECcchhheeccccc--cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH
Confidence 999999999999999999999998765322 12344678899999988888889999999999999999999988541
Q ss_pred --------------Ccch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 --------------KFED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 --------------~~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.+.. .+++..|+..+|++|||++|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l 266 (284)
T 2a19_B 225 SKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEIL 266 (284)
T ss_dssp HHHHHHHHTTCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred HHHHHHhhcccccccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 0111 1799999999999999999873
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-18 Score=182.41 Aligned_cols=105 Identities=27% Similarity=0.426 Sum_probs=83.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++........ ......++.+|+|||...+..++.++||||+||++|||+| |+.|+.
T Consensus 163 dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~ 242 (322)
T 1p4o_A 163 DLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQ 242 (322)
T ss_dssp CCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTT
T ss_pred CCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999865432111 1122345778999998877888999999999999999999 777765
Q ss_pred CC-c-------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PK-F-------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~-~-------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. . .. .+++.+|++.+|++|||+++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l 291 (322)
T 1p4o_A 243 GLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 291 (322)
T ss_dssp TSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred cCCHHHHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHH
Confidence 21 0 01 1799999999999999999863
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-18 Score=182.92 Aligned_cols=105 Identities=24% Similarity=0.385 Sum_probs=85.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++......... .....++..|+|||......++.++|||||||++|||+| |+.|+.
T Consensus 189 Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~ 268 (333)
T 2i1m_A 189 DVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYP 268 (333)
T ss_dssp CCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred CcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCc
Confidence 999999999999999999999998654322221 223456778999998877888999999999999999999 888875
Q ss_pred CCcc---------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PKFE---------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~~---------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.... + .+++..|++.+|++|||+++|+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~ 318 (333)
T 2i1m_A 269 GILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQIC 318 (333)
T ss_dssp TCCSSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred ccchhHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHH
Confidence 3110 0 1799999999999999999873
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-18 Score=178.96 Aligned_cols=105 Identities=24% Similarity=0.380 Sum_probs=83.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce--ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS--TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~--~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||+||+++.++.+|++|||+++.......... ....++..|+|||......++.++||||+||++|||+| |+.|+
T Consensus 142 dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~ 221 (291)
T 1xbb_A 142 DLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPY 221 (291)
T ss_dssp CCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred CCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999987653322111 12345678999998877778899999999999999999 99997
Q ss_pred CCC-c-------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPK-F-------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~-~-------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... . .+. +++..||+.+|++||++++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~ 271 (291)
T 1xbb_A 222 RGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVE 271 (291)
T ss_dssp TTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 631 0 011 799999999999999999863
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-18 Score=178.55 Aligned_cols=105 Identities=24% Similarity=0.414 Sum_probs=82.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc--eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI--STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~--~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||+||+++.++.+|++|||+++......... .....++.+|+|||......++.++||||+||++|||+| |+.|+
T Consensus 146 dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~ 225 (291)
T 1u46_A 146 DLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPW 225 (291)
T ss_dssp CCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred CCchheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence 999999999999999999999998765432211 123456778999998877778899999999999999999 99887
Q ss_pred CCCc---------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPKF---------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~---------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
...- .+ .+++..|+..+|++|||+++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~ 276 (291)
T 1u46_A 226 IGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALR 276 (291)
T ss_dssp TTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred ccCCHHHHHHHHHccCCCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHH
Confidence 5210 01 1799999999999999999863
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.2e-18 Score=189.21 Aligned_cols=102 Identities=25% Similarity=0.450 Sum_probs=83.2
Q ss_pred cccccceEecC---CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNE---DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++. ++.+|++|||+++..... .......+|.+|+|||... ..++.++||||+||++|||++|+.|+
T Consensus 161 Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~--~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf 237 (494)
T 3lij_A 161 DLKPENLLLESKEKDALIKIVDFGLSAVFENQ--KKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPF 237 (494)
T ss_dssp CCSGGGEEESCSSTTCCEEECCCTTCEECBTT--BCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cCChhhEEEeCCCCCCcEEEEECCCCeECCCC--ccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCC
Confidence 99999999975 456999999999876532 2233457889999999875 56899999999999999999999998
Q ss_pred CCC--------------------cc---h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPK--------------------FE---D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~--------------------~~---~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... |. + .+++..|++.+|++|||+++++
T Consensus 238 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l 290 (494)
T 3lij_A 238 GGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQAL 290 (494)
T ss_dssp CCSSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHHHHCCCChhhCccHHHHh
Confidence 621 11 1 1799999999999999999863
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=177.11 Aligned_cols=159 Identities=26% Similarity=0.193 Sum_probs=141.6
Q ss_pred CCcEEEEcCCCCCcCcCCccCC-CCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 105 LRVVYQVLRTQSLKGPVSPLLF-DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 105 ~~~~~l~l~~~~l~~~~~~~l~-~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
..++.|+|++|.+++..+..+. .+++|++|+|++|+++++.+..|.++++|++|+|++|+|+...+..|..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3477899999999976666676 999999999999999999999999999999999999999987788899999999999
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCCCCCCCcccc---CCCCCCCeeeccCCcCCCCCChhhhccCCC--CCEEEcc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRL---GELTRLQDLDLSDNLLSGSLTVSLFTNLQS--LSYLDVS 258 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~--L~~L~Ls 258 (729)
|++|++++..|..|.++++|++|+|++|+++...+..+ ..+++|++|+|++|.++ .++...+..++. |+.|+|+
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEec
Confidence 99999998889999999999999999999996544445 67999999999999998 677788888887 4899999
Q ss_pred cccccc
Q 046589 259 NNLLSG 264 (729)
Q Consensus 259 ~N~l~~ 264 (729)
+|.+..
T Consensus 198 ~N~~~C 203 (361)
T 2xot_A 198 NNPLEC 203 (361)
T ss_dssp SSCEEC
T ss_pred CCCccC
Confidence 999874
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=160.51 Aligned_cols=153 Identities=17% Similarity=0.251 Sum_probs=88.4
Q ss_pred CCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcE
Q 046589 126 FDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKS 205 (729)
Q Consensus 126 ~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 205 (729)
..+++|++|++++|.++..+ .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..+.++++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34555666666666665432 3555666666666666543 2335566666666666666666555556666666666
Q ss_pred EEccCCCCCCCCccccCCCCCCCeeeccCCc-CCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccc
Q 046589 206 LDFSGNGFNGTVPIRLGELTRLQDLDLSDNL-LSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGIN 284 (729)
Q Consensus 206 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n 284 (729)
|++++|.+++..|..++.+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|+.+++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 6666666665555566666666666666665 43 333 35566666666666666653 22 4556666666666666
Q ss_pred ccc
Q 046589 285 QFT 287 (729)
Q Consensus 285 ~l~ 287 (729)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.6e-17 Score=183.44 Aligned_cols=171 Identities=29% Similarity=0.313 Sum_probs=136.8
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
+.+++.|+++.+.+.. ++ .+..+++|+.|+|++|.+++.++ +..+++|+.|+|++|++++ +| .++.+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 4567788888888764 33 57788889999999998888655 7888889999999998874 33 688888899999
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 263 (729)
|++|.+++ + +.+..+++|+.|+|++|.+++. ..++.+++|+.|+|++|.+++..+ +..+++|+.|+|++|.++
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCC
Confidence 99998875 3 4588888999999999988854 568888889999999988875433 788888999999998888
Q ss_pred ccCCccccCCCcCCeecccccccccc
Q 046589 264 GNIPPEISHLKKLSDHYLGINQFTGS 289 (729)
Q Consensus 264 ~~~p~~l~~l~~L~~l~l~~n~l~~~ 289 (729)
+. ..+..+++|+.|+++.|.+.+.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CC--hHHccCCCCCEEEccCCcCcCC
Confidence 53 4578888888888888888754
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-18 Score=196.90 Aligned_cols=105 Identities=23% Similarity=0.406 Sum_probs=82.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..............++..|+|||......++.++|||||||++|||++ |+.|+..
T Consensus 516 Dikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~ 595 (656)
T 2j0j_A 516 DIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG 595 (656)
T ss_dssp CCSGGGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred ccchHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999998765332222233456678999998877888999999999999999997 8888753
Q ss_pred Cc--------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KF--------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.- .+ .+++..||..+|++|||+++++
T Consensus 596 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~ 643 (656)
T 2j0j_A 596 VKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELK 643 (656)
T ss_dssp CCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCccccHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 10 01 1799999999999999999863
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-18 Score=191.81 Aligned_cols=102 Identities=24% Similarity=0.412 Sum_probs=83.6
Q ss_pred cccccceEe---cCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILL---NEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill---~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||++ +.++.+|++|||+++...... ......+|++|+|||...+ .++.++||||+||++|||++|+.|+
T Consensus 151 Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf 227 (484)
T 3nyv_A 151 DLKPENLLLESKSKDANIRIIDFGLSTHFEASK--KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPF 227 (484)
T ss_dssp CCCGGGEEESSSSTTCCEEECCTTHHHHBCCCC--SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred CCCHHHEEEecCCCCCcEEEEeeeeeEEccccc--ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCC
Confidence 999999999 467899999999998765322 2234578899999998754 6899999999999999999999998
Q ss_pred CCC--------------------cc---h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPK--------------------FE---D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~--------------------~~---~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... |. + .+++..|++.+|++|||+++++
T Consensus 228 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l 280 (484)
T 3nyv_A 228 NGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDAL 280 (484)
T ss_dssp CCSSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence 621 11 0 1799999999999999999863
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-18 Score=178.30 Aligned_cols=105 Identities=23% Similarity=0.468 Sum_probs=80.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC----cceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS----HISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~----~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+||+||+++.++.+|++|||+++....... .......++..|+|||.... ..++.++||||+||++|||+||+.
T Consensus 146 dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~ 225 (303)
T 2vwi_A 146 DVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAA 225 (303)
T ss_dssp CCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999876543211 11123467889999997654 567899999999999999999999
Q ss_pred CCCCC--c---------------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGPK--F---------------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~~--~---------------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+... . .+ .+++..|+..+|++|||+++++
T Consensus 226 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll 286 (303)
T 2vwi_A 226 PYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELL 286 (303)
T ss_dssp TTTTSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred CCccCchhhHHHHHhccCCCccccccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHh
Confidence 97520 0 00 1689999999999999999874
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-17 Score=159.74 Aligned_cols=152 Identities=16% Similarity=0.232 Sum_probs=132.9
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
+.+++.++++++.+. .+| .+..+++|++|++++|.++.. +.+..+++|++|++++|++++..|..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 566889999999988 556 688999999999999977653 5789999999999999999988899999999999999
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCC-CCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNG-FNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL 262 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 262 (729)
+++|++++..|..+.++++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|++|++++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeCccc
Confidence 99999998888999999999999999998 65 556 69999999999999999984 44 578999999999999998
Q ss_pred cc
Q 046589 263 SG 264 (729)
Q Consensus 263 ~~ 264 (729)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 64
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-18 Score=182.68 Aligned_cols=105 Identities=25% Similarity=0.381 Sum_probs=81.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc---ceecccccccccCccccCCC------CCCchhhHHHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH---ISTDVASAISYVPPEYGRAR------KANERDNIYRFGVVLLELV 695 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~---~~~~~~~~~~y~ape~~~~~------~~~~~~Dv~s~G~vl~el~ 695 (729)
|+||+||+++.++.+|++|||+++........ ......++..|+|||..... .++.++|||||||++|||+
T Consensus 172 Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~ 251 (342)
T 1b6c_B 172 DLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIA 251 (342)
T ss_dssp CCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHH
Confidence 89999999999999999999999876543221 12244688899999977554 2336899999999999999
Q ss_pred hC----------CCCCCCC----------------------cch-----------HHHHhhcccCCCCCCCCccccC
Q 046589 696 IR----------KQPTGPK----------------------FED-----------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 696 tg----------~~p~~~~----------------------~~~-----------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|| +.|+... ... .+++.+||+.+|++|||+++|+
T Consensus 252 tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~ 328 (342)
T 1b6c_B 252 RRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIK 328 (342)
T ss_dssp TTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred hccCcCCcccccccCccccCcCcccHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHH
Confidence 99 6676421 000 0699999999999999999873
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-18 Score=173.92 Aligned_cols=99 Identities=18% Similarity=0.363 Sum_probs=79.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCC---CchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA---NERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~---~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++.++++||+++..... ....++..|+|||....... +.++|||||||++|||+||+.|+
T Consensus 138 dikp~Nil~~~~~~~~l~~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~ 211 (271)
T 3kmu_A 138 ALNSRSVMIDEDMTARISMADVKFSFQS------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPF 211 (271)
T ss_dssp CCSGGGEEECTTSCEEEEGGGSCCTTSC------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTT
T ss_pred CCccceEEEcCCcceeEEeccceeeecc------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999987754322 23456789999998765443 34799999999999999999998
Q ss_pred CCCc---------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPKF---------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~---------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
...- .+. +++..|++.+|++|||+++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il 262 (271)
T 3kmu_A 212 ADLSNMEIGMKVALEGLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIV 262 (271)
T ss_dssp TTSCHHHHHHHHHHSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred cccChHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 6310 011 799999999999999999873
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-18 Score=178.97 Aligned_cols=103 Identities=21% Similarity=0.349 Sum_probs=82.3
Q ss_pred cccccceEecCCc---cEEEeecCCccccCCCCCcceecccccccccCcccc---CCCCCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNEDF---DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYG---RARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~~---~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~---~~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||+||+++.++ .+|++|||+++.... ........++..|+|||.. ....++.++||||+||++|||+||+
T Consensus 139 dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~ 216 (322)
T 2ycf_A 139 DLKPENVLLSSQEEDCLIKITDFGHSKILGE--TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGY 216 (322)
T ss_dssp CCSGGGEEESSSSSSCCEEECCCTTCEECCC--CHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHEEEecCCCCCeEEEccCccceeccc--ccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCC
Confidence 9999999998655 499999999987542 1122345678999999975 3467789999999999999999999
Q ss_pred CCCCCC----------------cc--------h--HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGPK----------------FE--------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~~----------------~~--------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+... +. + .+++..|+..+|++|||+++++
T Consensus 217 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l 273 (322)
T 2ycf_A 217 PPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEAL 273 (322)
T ss_dssp CSSCSTTCSSCHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred CCCcccchHHHHHHHHHhCccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHh
Confidence 998521 00 0 1799999999999999999863
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=174.01 Aligned_cols=103 Identities=24% Similarity=0.406 Sum_probs=84.1
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC------CCCCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR------ARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~------~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||+||+++.++.+|++|||+++...... ......++..|+|||... ...++.++||||+||++|||++|+
T Consensus 149 dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~ 226 (298)
T 1phk_A 149 DLKPENILLDDDMNIKLTDFGFSCQLDPGE--KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGS 226 (298)
T ss_dssp CCSGGGEEECTTCCEEECCCTTCEECCTTC--CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSS
T ss_pred CCCcceEEEcCCCcEEEecccchhhcCCCc--ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCC
Confidence 999999999999999999999998765322 223456788999999753 456788999999999999999999
Q ss_pred CCCCCC--------------------cc---h--HHHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGPK--------------------FE---D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~~--------------------~~---~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+... |. + .+++..|+..+|++|||+++++
T Consensus 227 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll 282 (298)
T 1phk_A 227 PPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEAL 282 (298)
T ss_dssp CSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHT
T ss_pred CCCcCccHHHHHHHHhcCCcccCcccccccCHHHHHHHHHHccCCcccCCCHHHHH
Confidence 997521 10 1 1799999999999999999875
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-18 Score=180.01 Aligned_cols=105 Identities=27% Similarity=0.356 Sum_probs=81.7
Q ss_pred cccccceEecC---CccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCC
Q 046589 625 DIKASNILLNE---DFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQ 699 (729)
Q Consensus 625 dlk~~nill~~---~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~ 699 (729)
|+||+||+++. +..+|++|||+++....... .......++.+|+|||......++.++|||||||++|||+| |+.
T Consensus 165 dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~ 244 (327)
T 2yfx_A 165 DIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYM 244 (327)
T ss_dssp CCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred cCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCC
Confidence 99999999984 45799999999876432221 11223456789999998877888999999999999999999 888
Q ss_pred CCCCCcc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGPKFE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+...-. . .+++..|++.+|++||++++|+
T Consensus 245 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll 296 (327)
T 2yfx_A 245 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIIL 296 (327)
T ss_dssp SSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCCcCHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHH
Confidence 8753110 0 1799999999999999999873
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.2e-17 Score=182.78 Aligned_cols=150 Identities=26% Similarity=0.377 Sum_probs=66.9
Q ss_pred cCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCC
Q 046589 327 LGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLS 406 (729)
Q Consensus 327 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 406 (729)
+..+++|+.|+|++|++.+..+ +..+++|+.|+|++|++.+ +| .+..+++|+.|+|++|.+++. + .+..++
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~----~l~~l~ 131 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI-N----GLVHLP 131 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC-G----GGGGCT
T ss_pred HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC-c----cccCCC
Confidence 4444444555555444443332 4444445555555544442 11 344444444444444444432 1 122334
Q ss_pred CCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCC
Q 046589 407 QLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLS 486 (729)
Q Consensus 407 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs 486 (729)
+|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++++. | .+..+++|+.|+|+
T Consensus 132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELF 205 (605)
T ss_dssp TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECC
T ss_pred ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEcc
Confidence 444444444444432 334444444444444444443333 44444444444444444432 2 34444444444444
Q ss_pred CCcCc
Q 046589 487 YNNLS 491 (729)
Q Consensus 487 ~N~l~ 491 (729)
+|+++
T Consensus 206 ~N~l~ 210 (605)
T 1m9s_A 206 SQECL 210 (605)
T ss_dssp SEEEE
T ss_pred CCcCc
Confidence 44443
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-18 Score=179.76 Aligned_cols=105 Identities=20% Similarity=0.345 Sum_probs=81.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc--------ceecccccccccCccccCCCC---CCchhhHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH--------ISTDVASAISYVPPEYGRARK---ANERDNIYRFGVVLLE 693 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~--------~~~~~~~~~~y~ape~~~~~~---~~~~~Dv~s~G~vl~e 693 (729)
|+||+||+++.++.+|++|||+++........ ......++.+|+|||...... ++.++|||||||++||
T Consensus 159 dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~e 238 (317)
T 2buj_A 159 DLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYA 238 (317)
T ss_dssp CCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHH
T ss_pred CCCHHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHH
Confidence 99999999999999999999998764321100 011234688999999875433 6889999999999999
Q ss_pred HHhCCCCCCC----------------------CcchH--HHHhhcccCCCCCCCCccccC
Q 046589 694 LVIRKQPTGP----------------------KFEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 694 l~tg~~p~~~----------------------~~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|++|+.|+.. .+... +++..|++.+|.+|||+++|+
T Consensus 239 l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll 298 (317)
T 2buj_A 239 MMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLL 298 (317)
T ss_dssp HHHSSCTTHHHHHTTSCHHHHHHCC--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred HHhCCCChhhhhcccchhhHHhhccCCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHH
Confidence 9999999741 00111 799999999999999999873
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=174.82 Aligned_cols=104 Identities=18% Similarity=0.299 Sum_probs=77.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCC----CcceecccccccccCccccCC---------CCCCchhhHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCK----SHISTDVASAISYVPPEYGRA---------RKANERDNIYRFGVVL 691 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~----~~~~~~~~~~~~y~ape~~~~---------~~~~~~~Dv~s~G~vl 691 (729)
|+||+||+++ ++.+|++|||+++...... ........++..|+|||.... ..++.++|||||||++
T Consensus 155 dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il 233 (319)
T 2y4i_B 155 DLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIW 233 (319)
T ss_dssp CCCSTTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHH
T ss_pred CCChhhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHH
Confidence 9999999998 6789999999987643111 111223457889999997653 4578899999999999
Q ss_pred HHHHhCCCCCCCCcc---------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 692 LELVIRKQPTGPKFE---------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 692 ~el~tg~~p~~~~~~---------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|||+||+.|+...-. . .+++..||..+|++|||+++++
T Consensus 234 ~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~ 294 (319)
T 2y4i_B 234 YELHAREWPFKTQPAEAIIWQMGTGMKPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLM 294 (319)
T ss_dssp HHHHHSSCSSSSCCHHHHHHHHHTTCCCCCCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHH
T ss_pred HHHHhCCCCCCCCCHHHHHHHhccCCCCCCCcCCCCHHHHHHHHHHhcCChhhCcCHHHHH
Confidence 999999999863110 1 1899999999999999999873
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-17 Score=186.76 Aligned_cols=102 Identities=26% Similarity=0.394 Sum_probs=83.9
Q ss_pred cccccceEecCCc---cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDF---DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~---~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++ .+|++|||+++..... .......++++|+|||... ..++.++||||+||++|||++|+.|+
T Consensus 171 Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf 247 (504)
T 3q5i_A 171 DIKPENILLENKNSLLNIKIVDFGLSSFFSKD--YKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPF 247 (504)
T ss_dssp CCSGGGEEESSTTCCSSEEECCCTTCEECCTT--SCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred CCcHHHEEEecCCCCccEEEEECCCCEEcCCC--CccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 9999999998665 7999999999876532 2233457889999999875 56899999999999999999999998
Q ss_pred CCCcc-----------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPKFE-----------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~~-----------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
...-. + .+++..|+..+|.+|||++|++
T Consensus 248 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l 300 (504)
T 3q5i_A 248 GGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEAL 300 (504)
T ss_dssp CCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHh
Confidence 63110 0 1799999999999999999863
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=175.86 Aligned_cols=105 Identities=20% Similarity=0.280 Sum_probs=81.7
Q ss_pred cccccceEec-CCccEEEeecCCccccCCCCC--cceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLN-EDFDAKVLDFGLARLISDCKS--HISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~-~~~~~kl~dfgl~~~~~~~~~--~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++ .++.+|++|||+++....... .......++.+|+|||.... ..++.++|||||||++|||+||+.|
T Consensus 145 dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~p 224 (320)
T 2i6l_A 145 DLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTL 224 (320)
T ss_dssp CCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCCHHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCC
Confidence 9999999997 567999999999987542211 11223456788999997644 6789999999999999999999999
Q ss_pred CCCCc-------------------------------------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPKF-------------------------------------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~~-------------------------------------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+.... .+ .+++.+|++.+|++|||+++++
T Consensus 225 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 304 (320)
T 2i6l_A 225 FAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEAL 304 (320)
T ss_dssp SCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHh
Confidence 86311 00 1799999999999999999873
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-18 Score=174.80 Aligned_cols=100 Identities=15% Similarity=0.233 Sum_probs=79.3
Q ss_pred cccccceEecC-------------------CccEEEeecCCccccCCCCCcceecccccccccCccccCCC-CCCchhhH
Q 046589 625 DIKASNILLNE-------------------DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR-KANERDNI 684 (729)
Q Consensus 625 dlk~~nill~~-------------------~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~-~~~~~~Dv 684 (729)
|+||+||+++. ...+|++|||.++...... ...++..|+|||..... .++.++||
T Consensus 140 Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~~Di 214 (289)
T 1x8b_A 140 DIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQ-----VEEGDSRFLANEVLQENYTHLPKADI 214 (289)
T ss_dssp CCSGGGEEEC--------------------CCCEEECCCTTCEETTCSC-----CCCCCGGGCCHHHHTTCCTTHHHHHH
T ss_pred CCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCcc-----ccCCCccccChhHhcCCCCCCchhhH
Confidence 99999999984 4478999999998765321 23578899999987654 56689999
Q ss_pred HHHHHHHHHHHhCCCCCCCC-----------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 685 YRFGVVLLELVIRKQPTGPK-----------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 685 ~s~G~vl~el~tg~~p~~~~-----------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|||||++||+++|+.|+... +.+. +++..|++.+|++|||+++++
T Consensus 215 ~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll 278 (289)
T 1x8b_A 215 FALALTVVCAAGAEPLPRNGDQWHEIRQGRLPRIPQVLSQEFTELLKVMIHPDPERRPSAMALV 278 (289)
T ss_dssp HHHHHHHHHHTTCCCCCSSSHHHHHHHTTCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcchhHHHHHHcCCCCCCCcccCHHHHHHHHHHhCCCcccCCCHHHHh
Confidence 99999999999998765411 1111 899999999999999999874
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=99.70 E-value=8.9e-18 Score=180.83 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=62.6
Q ss_pred cccccceEec------CCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLN------EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~------~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||+||+++ ..+.+|++|||+++..... .....+|.+|+|||...+..++.++||||+||++|||+||+
T Consensus 157 Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~ 232 (373)
T 1q8y_A 157 DIKPENVLMEIVDSPENLIQIKIADLGNACWYDEH----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGD 232 (373)
T ss_dssp CCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBC----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred CCChHHeEEeccCCCcCcceEEEcccccccccCCC----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCC
Confidence 9999999994 4458999999999875431 23346789999999888888899999999999999999999
Q ss_pred CCCC
Q 046589 699 QPTG 702 (729)
Q Consensus 699 ~p~~ 702 (729)
.|+.
T Consensus 233 ~pf~ 236 (373)
T 1q8y_A 233 FLFE 236 (373)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 9986
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-18 Score=180.69 Aligned_cols=105 Identities=26% Similarity=0.405 Sum_probs=83.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc--eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI--STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~--~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++......... .....++..|+|||......++.++||||+||++|||+||+.|+.
T Consensus 170 dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~ 249 (326)
T 2w1i_A 170 DLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSK 249 (326)
T ss_dssp CCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCcceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999998765332211 112355677999998877778899999999999999999987754
Q ss_pred CC------------------------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PK------------------------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~------------------------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. +... +++..||+.+|++|||+++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~ 314 (326)
T 2w1i_A 250 SPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLA 314 (326)
T ss_dssp SHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 10 0011 799999999999999999873
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-18 Score=185.80 Aligned_cols=102 Identities=19% Similarity=0.293 Sum_probs=81.9
Q ss_pred cccccceEe----cCCccEEEeecCCccccCCCCCcceecccccccccCccccCC--------CCCCchhhHHHHHHHHH
Q 046589 625 DIKASNILL----NEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA--------RKANERDNIYRFGVVLL 692 (729)
Q Consensus 625 dlk~~nill----~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~--------~~~~~~~Dv~s~G~vl~ 692 (729)
|+||+||++ +.++.+|++|||+++..... .......++..|+|||.... ..++.++|||||||++|
T Consensus 137 Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~ 214 (396)
T 4eut_A 137 NIKPGNIMRVIGEDGQSVYKLTDFGAARELEDD--EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFY 214 (396)
T ss_dssp CCCGGGEEEEECTTSCEEEEECCGGGCEECCCG--GGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHEEEeecCCCceeEEEecCCCceEccCC--CccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHH
Confidence 999999999 78889999999999876432 22234568899999997643 45678999999999999
Q ss_pred HHHhCCCCCCC-C---------------------------------cc----------h------HHHHhhcccCCCCCC
Q 046589 693 ELVIRKQPTGP-K---------------------------------FE----------D------KDIVVGCVSDNPIAK 722 (729)
Q Consensus 693 el~tg~~p~~~-~---------------------------------~~----------~------~~l~~~c~~~~p~~R 722 (729)
||+||+.|+.. . |. . .+++..|++.+|++|
T Consensus 215 el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R 294 (396)
T 4eut_A 215 HAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKC 294 (396)
T ss_dssp HHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTS
T ss_pred HHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhh
Confidence 99999999742 0 00 0 068899999999999
Q ss_pred CCcccc
Q 046589 723 PGMLRV 728 (729)
Q Consensus 723 p~~~~v 728 (729)
|+++++
T Consensus 295 ~s~~e~ 300 (396)
T 4eut_A 295 WGFDQF 300 (396)
T ss_dssp CCHHHH
T ss_pred ccHHHH
Confidence 999886
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-18 Score=176.65 Aligned_cols=102 Identities=25% Similarity=0.469 Sum_probs=83.4
Q ss_pred cccccceEec-CCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLN-EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+|++||+++ .++.+|++|||+++..... ......++.+|+|||......+ +.++||||+||++|||+||+.|+.
T Consensus 164 dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 240 (312)
T 2iwi_A 164 DIKDENILIDLRRGCAKLIDFGSGALLHDE---PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFE 240 (312)
T ss_dssp CCSGGGEEEETTTTEEEECCCSSCEECCSS---CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCChhhEEEeCCCCeEEEEEcchhhhcccC---cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCC
Confidence 9999999999 8899999999999876532 1234567889999997765555 458999999999999999999986
Q ss_pred C-------------Ccch--HHHHhhcccCCCCCCCCccccC
Q 046589 703 P-------------KFED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-------------~~~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .+.. .+++.+|++.+|++|||++|++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l 282 (312)
T 2iwi_A 241 RDQEILEAELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEIL 282 (312)
T ss_dssp SHHHHHHTCCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred ChHHHhhhccCCcccCCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 2 1111 1899999999999999999874
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-20 Score=209.91 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=57.2
Q ss_pred cCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCc-cccccccCCC
Q 046589 327 LGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTI-EDVFGRCTNL 405 (729)
Q Consensus 327 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~l 405 (729)
++.+++|+.|+|++|++. .+|..++.+++|++|+|++|++++ +| .+..+++|+.|+|++|.+++.+ |..+ ..+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l---~~l 532 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL---VSC 532 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG---GGC
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH---hcC
Confidence 344445555555555555 445555555666666666666654 34 5555666666666666665554 4443 234
Q ss_pred CCCcEEEcCCCcCcccCCc---ccCCCCCCCEEEc
Q 046589 406 SQLEKLDLSSNMLTGRIPK---EIGNLRSIQILKL 437 (729)
Q Consensus 406 ~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L 437 (729)
++|+.|+|++|.+++.+|. .+..+++|+.|++
T Consensus 533 ~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 533 PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 4566666666666654332 1233566666653
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-17 Score=180.37 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=88.2
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC--CCCCchhhHHHHHHHHHHHHhCC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA--RKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~--~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
+||||+||+||+++.++.+||+|||+|+.... ......++.+|+|||.... ..++.++|||||||++|||+||+
T Consensus 215 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~ 290 (371)
T 3q60_A 215 LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGT----RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLF 290 (371)
T ss_dssp EEETTCSGGGEEECTTSCEEECCGGGEEETTC----EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred CccCcCCHHHEEECCCCCEEEEecceeeecCC----CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCC
Confidence 78999999999999999999999999987532 1223455689999998876 67899999999999999999999
Q ss_pred CCCCCCc-------c---------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGPKF-------E---------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~~~-------~---------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+...+ . +. +++..|++.+|++|||+++++
T Consensus 291 ~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l 351 (371)
T 3q60_A 291 LPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAM 351 (371)
T ss_dssp CSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHT
T ss_pred CCCCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHh
Confidence 9976321 0 00 799999999999999999875
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-17 Score=184.17 Aligned_cols=103 Identities=18% Similarity=0.310 Sum_probs=81.7
Q ss_pred cccccceEecCCc---cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDF---DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~---~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++ .+|++|||+++...... ......++.+|+|||...+..++.++||||+||++||++||+.|+
T Consensus 146 DLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~--~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf 223 (676)
T 3qa8_A 146 DLKPENIVLQPGPQRLIHKIIDLGYAKELDQGE--LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPF 223 (676)
T ss_dssp CCCSTTEEEECCSSSCEEEECSCCCCCBTTSCC--CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSC
T ss_pred CCCHHHeEeecCCCceeEEEccccccccccccc--ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCC
Confidence 9999999999665 49999999998765322 223457889999999988888999999999999999999999998
Q ss_pred CCCcc-------------------------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPKFE-------------------------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~~-------------------------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
...+. + .+++..|+..+|++|||+++++
T Consensus 224 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL 296 (676)
T 3qa8_A 224 LPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNP 296 (676)
T ss_dssp CSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCC
T ss_pred CcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHh
Confidence 42100 0 0799999999999999998864
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-18 Score=177.89 Aligned_cols=103 Identities=25% Similarity=0.415 Sum_probs=81.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++...... ......++..|+|||......++.++||||+||++|||+| |+.|+..
T Consensus 167 dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~ 244 (327)
T 1fvr_A 167 DLAARNILVGENYVAKIADFGLSRGQEVYV--KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG 244 (327)
T ss_dssp CCSGGGEEECGGGCEEECCTTCEESSCEEC--CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred CCccceEEEcCCCeEEEcccCcCccccccc--cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCC
Confidence 999999999999999999999987533211 1122345678999998877778999999999999999998 9999753
Q ss_pred Cc--------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 704 KF--------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.- .+. +++.+|++.+|++|||+++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell 292 (327)
T 1fvr_A 245 MTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL 292 (327)
T ss_dssp CCHHHHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CcHHHHHHHhhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 10 011 799999999999999999863
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-17 Score=165.16 Aligned_cols=166 Identities=25% Similarity=0.249 Sum_probs=132.7
Q ss_pred EEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeecc
Q 046589 108 VYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187 (729)
Q Consensus 108 ~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N 187 (729)
..++++.+.+.+.. .+.++++|++|++++|.++... .+..+++|++|+|++|++++. |. +..+++|++|+|++|
T Consensus 22 ~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 22 VKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSS
T ss_pred HHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCC
Confidence 34556677776433 4677889999999999988754 678889999999999999854 44 889999999999999
Q ss_pred CCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCC
Q 046589 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIP 267 (729)
Q Consensus 188 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 267 (729)
++++ +|.. .. ++|++|++++|++++ ++ .+..+++|++|++++|++++ ++ .+..+++|++|++++|.+++.
T Consensus 96 ~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 96 RLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp CCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCCBC--
T ss_pred ccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCcch--
Confidence 9985 4433 33 889999999999885 33 58889999999999999874 43 578899999999999999865
Q ss_pred ccccCCCcCCeecccccccccc
Q 046589 268 PEISHLKKLSDHYLGINQFTGS 289 (729)
Q Consensus 268 ~~l~~l~~L~~l~l~~n~l~~~ 289 (729)
..+..+++|+.+++++|.+++.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECC
T ss_pred HHhccCCCCCEEeCCCCcccCC
Confidence 6788888999999998887644
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-17 Score=170.95 Aligned_cols=102 Identities=27% Similarity=0.432 Sum_probs=81.1
Q ss_pred cccccceEecCC---ccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNED---FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~---~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.+ ..+|++|||+++...... ......++..|+|||...+ .++.++||||+||++|||+||+.|+
T Consensus 146 dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~ 222 (287)
T 2wei_A 146 DLKPENILLESKEKDCDIKIIDFGLSTCFQQNT--KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPF 222 (287)
T ss_dssp CCCGGGEEESCSSTTCCEEECSTTGGGTBCCCS--SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred CCChhhEEEecCCCcccEEEeccCcceeecCCC--ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCC
Confidence 999999999753 479999999988754321 1223457789999997754 4789999999999999999999997
Q ss_pred CCC--------------------c---ch--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPK--------------------F---ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~--------------------~---~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... | .+ .+++..|+..+|++|||+++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell 275 (287)
T 2wei_A 223 YGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCL 275 (287)
T ss_dssp CCSSHHHHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHh
Confidence 521 0 01 1799999999999999999873
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-17 Score=173.68 Aligned_cols=102 Identities=23% Similarity=0.373 Sum_probs=84.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC-CCCc-hhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR-KANE-RDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~-~~~~-~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+++..... ......++..|+|||..... .++. ++||||+||++|||+||+.|+.
T Consensus 177 dl~p~Nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 253 (348)
T 2pml_X 177 DVKPSNILMDKNGRVKLSDFGESEYMVDK---KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFS 253 (348)
T ss_dssp CCCGGGEEECTTSCEEECCCTTCEECBTT---EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCChHhEEEcCCCcEEEeccccccccccc---cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999875432 23345778899999988765 5666 9999999999999999999975
Q ss_pred CC----------------cc-----------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PK----------------FE-----------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~----------------~~-----------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. +. . .+++..|++.+|++|||++|++
T Consensus 254 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l 321 (348)
T 2pml_X 254 LKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDAL 321 (348)
T ss_dssp CSSCSHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred CCCcHHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 21 11 1 1799999999999999999874
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-17 Score=171.71 Aligned_cols=105 Identities=27% Similarity=0.465 Sum_probs=75.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCC-------------CcceecccccccccCccccCC-CCCCchhhHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCK-------------SHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVV 690 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~-------------~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~v 690 (729)
|+||+||+++.++.+|++|||+++...... ........++..|+|||.... ..++.++||||+||+
T Consensus 141 dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~i 220 (303)
T 1zy4_A 141 DLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGII 220 (303)
T ss_dssp CCCGGGEEECTTSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHH
T ss_pred cCCHHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHH
Confidence 999999999999999999999998654211 011223467889999998764 468999999999999
Q ss_pred HHHHHhCCCCCC-----------------CCcc------hHHHHhhcccCCCCCCCCccccC
Q 046589 691 LLELVIRKQPTG-----------------PKFE------DKDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 691 l~el~tg~~p~~-----------------~~~~------~~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+|||+++..+.. ..+. -.+++.+|++.+|++|||+++++
T Consensus 221 l~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll 282 (303)
T 1zy4_A 221 FFEMIYPFSTGMERVNILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLL 282 (303)
T ss_dssp HHHHHSCCSSHHHHHHHHHHHHSTTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred HHHHHhccCCchhHHHHHHhccccccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHh
Confidence 999998332110 0111 12799999999999999999874
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=152.31 Aligned_cols=132 Identities=23% Similarity=0.217 Sum_probs=95.9
Q ss_pred EEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcc-cccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeec
Q 046589 108 VYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSP-QVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186 (729)
Q Consensus 108 ~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 186 (729)
+.++++++.++ .+|..+.. +|++|++++|.+++..+. .|+.+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 35677777774 46654443 777777777777776654 467777777777777777777777777777777777777
Q ss_pred cCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC
Q 046589 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLT 242 (729)
Q Consensus 187 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 242 (729)
|++++..|..|.++++|++|+|++|++++..|..+..+++|++|++++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 77777777777777777777777777777777777777777777777777765544
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-17 Score=194.32 Aligned_cols=182 Identities=23% Similarity=0.272 Sum_probs=104.7
Q ss_pred CcEEEEcCCCCCcCcCCccCCCCCCC-----cEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCc
Q 046589 106 RVVYQVLRTQSLKGPVSPLLFDLSKL-----RVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLE 180 (729)
Q Consensus 106 ~~~~l~l~~~~l~~~~~~~l~~L~~L-----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~ 180 (729)
++..++|..+.+.. .+..+.....| ..++++.|.+. .++..|..++.|+.|+|++|.+. .+|..+..+++|+
T Consensus 174 ~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 174 LTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred ccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence 45666666666654 22222221112 22223333333 34666777888888888888887 6777777888888
Q ss_pred EEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccc
Q 046589 181 TLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNN 260 (729)
Q Consensus 181 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N 260 (729)
+|+|++|.++ .+|..|+++++|++|+|++|.|+ .+|..|+.+++|++|+|++|.++ .+|. .|..+++|++|+|++|
T Consensus 251 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~-~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 251 RLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW-EFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS-STTSCTTCCCEECTTS
T ss_pred EEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh-hhhcCCCccEEeCCCC
Confidence 8888888887 77888888888888888888887 67888888888888888888886 6663 3778888888888888
Q ss_pred cccccCCccccCCCcC-Ceeccccccccccccccc
Q 046589 261 LLSGNIPPEISHLKKL-SDHYLGINQFTGSIQSEL 294 (729)
Q Consensus 261 ~l~~~~p~~l~~l~~L-~~l~l~~n~l~~~~~~~l 294 (729)
.+++.+|..+..+... ..++++.|.+++.+|..+
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 8887777766544221 235667777776666544
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-17 Score=194.57 Aligned_cols=121 Identities=26% Similarity=0.412 Sum_probs=74.8
Q ss_pred CcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCc
Q 046589 371 IPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRL 450 (729)
Q Consensus 371 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 450 (729)
.|..+..+..|+.|+|++|.+...++..+ .+++|++|+|++|.|+ .+|..|+++++|++|+|++|.|+ .+|..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~----~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 289 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIF----KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL 289 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGG----GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhc----CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh
Confidence 45556666666667776666664333332 3556666777777766 56666666777777777777766 566666
Q ss_pred cCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcccccccc
Q 046589 451 GDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKH 498 (729)
Q Consensus 451 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~ 498 (729)
+.+++|++|+|++|.|+ .+|..|..+++|+.|+|++|+|++.+|..+
T Consensus 290 ~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred cCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 66777777777777665 556666667777777777777766555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.4e-19 Score=198.38 Aligned_cols=84 Identities=27% Similarity=0.412 Sum_probs=41.6
Q ss_pred CCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccC-chhhhcCCCCCEEe
Q 046589 406 SQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSI-PEKIADLAQLQFLD 484 (729)
Q Consensus 406 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~Ld 484 (729)
++|+.|+|++|+++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|+
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 34444444444444 344444555555555555555543 33 4445555555555555555443 55555555555555
Q ss_pred CCCCcCcc
Q 046589 485 LSYNNLSR 492 (729)
Q Consensus 485 Ls~N~l~~ 492 (729)
|++|++++
T Consensus 540 L~~N~l~~ 547 (567)
T 1dce_A 540 LQGNSLCQ 547 (567)
T ss_dssp CTTSGGGG
T ss_pred ecCCcCCC
Confidence 55555544
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-16 Score=148.17 Aligned_cols=132 Identities=27% Similarity=0.291 Sum_probs=99.5
Q ss_pred CCCcEEECCCCCCC-CCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEE
Q 046589 129 SKLRVLNLSQNLLF-GQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLD 207 (729)
Q Consensus 129 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 207 (729)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|+|++|++++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67888888888877 55566677788888888888887754 6777888888888888888766777777788888888
Q ss_pred ccCCCCCCCC-ccccCCCCCCCeeeccCCcCCCCCCh---hhhccCCCCCEEEccccccc
Q 046589 208 FSGNGFNGTV-PIRLGELTRLQDLDLSDNLLSGSLTV---SLFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 208 Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~---~~~~~l~~L~~L~Ls~N~l~ 263 (729)
+++|.+++.. +..+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888887432 267778888888888888877 3443 46777888888888887765
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-16 Score=149.19 Aligned_cols=131 Identities=24% Similarity=0.315 Sum_probs=108.1
Q ss_pred cEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCc-cccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccC
Q 046589 132 RVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPS-QLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSG 210 (729)
Q Consensus 132 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 210 (729)
+++++++|+++.++. .+. .+|++|+|++|++++..+. .|+.+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 789999999876543 332 2889999999999865554 488899999999999999988888999999999999999
Q ss_pred CCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccC
Q 046589 211 NGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNI 266 (729)
Q Consensus 211 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 266 (729)
|++++..|..|..+++|++|+|++|++++..+ ..|..+++|++|++++|.+.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcC
Confidence 99988888888889999999999998885444 67788888899999888887643
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=154.74 Aligned_cols=148 Identities=23% Similarity=0.309 Sum_probs=129.5
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
+.+++.+++++|.++. ++ .+..+++|++|+|++|++++..+ +.++++|++|+|++|++++ +|.. .. ++|++|+
T Consensus 40 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEE
T ss_pred cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEE
Confidence 5678999999999884 55 68899999999999999998765 8999999999999999985 5543 33 9999999
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 263 (729)
|++|++++ + +.+.++++|++|++++|++++. + .++.+++|++|++++|.+++. ..+..+++|++|++++|.+.
T Consensus 113 L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 113 LDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEE
T ss_pred ccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCccc
Confidence 99999985 3 4699999999999999999854 4 689999999999999999854 56889999999999999998
Q ss_pred cc
Q 046589 264 GN 265 (729)
Q Consensus 264 ~~ 265 (729)
+.
T Consensus 186 ~~ 187 (263)
T 1xeu_A 186 NE 187 (263)
T ss_dssp CC
T ss_pred CC
Confidence 65
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=143.15 Aligned_cols=135 Identities=23% Similarity=0.208 Sum_probs=120.5
Q ss_pred CCCCCCEEeccCCcCc-ccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCe
Q 046589 151 NLKRLKMLSLGENQLS-GSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQD 229 (729)
Q Consensus 151 ~l~~L~~L~Ls~N~l~-~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 229 (729)
..++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3578999999999998 78899999999999999999999865 78999999999999999999878888888999999
Q ss_pred eeccCCcCCCCCChhhhccCCCCCEEEcccccccccCC---ccccCCCcCCeecccccccc
Q 046589 230 LDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIP---PEISHLKKLSDHYLGINQFT 287 (729)
Q Consensus 230 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~l~l~~n~l~ 287 (729)
|++++|.+++......+..+++|++|++++|.+++..+ ..+..+++|+.++++.|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999999843233678999999999999999996655 48899999999999998775
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-15 Score=144.95 Aligned_cols=128 Identities=26% Similarity=0.293 Sum_probs=88.9
Q ss_pred cEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCC
Q 046589 132 RVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGN 211 (729)
Q Consensus 132 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 211 (729)
+++++++|+++.++.. + .++|++|+|++|+|+ .+|..|..+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4666777766654432 2 246777777777776 56677777777777777777777666666777777777777777
Q ss_pred CCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccc
Q 046589 212 GFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG 264 (729)
Q Consensus 212 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 264 (729)
.+++..|..|..+++|++|+|++|.++ .++...|..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeec
Confidence 777666667777777777777777776 4555667777777777777777653
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-16 Score=143.97 Aligned_cols=127 Identities=26% Similarity=0.317 Sum_probs=76.3
Q ss_pred CCCcEEECCCCCCC-CCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEE
Q 046589 129 SKLRVLNLSQNLLF-GQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLD 207 (729)
Q Consensus 129 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 207 (729)
++|++|++++|.++ +..|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+.++++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 44555556666666666666666543 5566666666666666666655565555666666666
Q ss_pred ccCCCCCCC-CccccCCCCCCCeeeccCCcCCCCCCh---hhhccCCCCCEEEcc
Q 046589 208 FSGNGFNGT-VPIRLGELTRLQDLDLSDNLLSGSLTV---SLFTNLQSLSYLDVS 258 (729)
Q Consensus 208 Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~---~~~~~l~~L~~L~Ls 258 (729)
+++|.+++. .+..++.+++|++|++++|.+++ ++. ..+..+++|++||++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCC
Confidence 666666542 23556666666666666666653 332 345666666666654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-16 Score=183.66 Aligned_cols=96 Identities=20% Similarity=0.346 Sum_probs=78.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.+ .+||+|||+++..... ....+|.+|+|||..... .+.++|||||||++|||++|..|+...
T Consensus 207 Dlkp~NIll~~~-~~kl~DFG~a~~~~~~-----~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~ 279 (681)
T 2pzi_A 207 DLKPENIMLTEE-QLKLIDLGAVSRINSF-----GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGR 279 (681)
T ss_dssp CCSGGGEEECSS-CEEECCCTTCEETTCC-----SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTE
T ss_pred ccChHHeEEeCC-cEEEEecccchhcccC-----CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccc
Confidence 999999999976 8999999999875432 345688999999977544 488999999999999999998886531
Q ss_pred cc-------h--------HHHHhhcccCCCCCCCCccc
Q 046589 705 FE-------D--------KDIVVGCVSDNPIAKPGMLR 727 (729)
Q Consensus 705 ~~-------~--------~~l~~~c~~~~p~~Rp~~~~ 727 (729)
+. . .+++.+|+..+|++||+..+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~ 317 (681)
T 2pzi_A 280 YVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAE 317 (681)
T ss_dssp ECSSCCTTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHH
T ss_pred ccccccccccccccCHHHHHHHhhhccCChhhCCCHHH
Confidence 11 0 17999999999999997654
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-16 Score=166.50 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=53.2
Q ss_pred CCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCC-EEEccCCccccccCcCccCCCCCC
Q 046589 379 ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQ-ILKLNSNFFNGSIPMRLGDSTSLN 457 (729)
Q Consensus 379 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~ 457 (729)
++|+.++|++|.++.+.+..| .++++|+.++|.+| ++...+..|.++++|+ .+++.+ .++..-+.+|.++++|+
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF---~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTF---AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTT---TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred CCCeEEECCCCCcceecHhhh---hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 444444444444443333333 22334455555554 4444445556666666 666655 44434445566666666
Q ss_pred EEEcccccCCccCchhhhcCCCCCEEe
Q 046589 458 ILELGNNNLNGSIPEKIADLAQLQFLD 484 (729)
Q Consensus 458 ~L~Ls~N~l~~~~p~~l~~l~~L~~Ld 484 (729)
.+++++|+++...+..|.++++|+.++
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCCccCccchhhhcCCcchhhhc
Confidence 666666666655555666666666554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-15 Score=139.94 Aligned_cols=129 Identities=22% Similarity=0.223 Sum_probs=68.4
Q ss_pred cEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCC
Q 046589 132 RVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGN 211 (729)
Q Consensus 132 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 211 (729)
+.+++++|+++..+... .++|++|++++|++++..+..++.+++|++|++++|++++..+..|.++++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 44555555554433211 234555555555555444444555555555555555555444444555555555555555
Q ss_pred CCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccc
Q 046589 212 GFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG 264 (729)
Q Consensus 212 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 264 (729)
.+++..+..+..+++|++|++++|.++ .++...|..+++|++|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec
Confidence 555444444555555666666655555 3443445555666666666665554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.9e-15 Score=141.43 Aligned_cols=130 Identities=22% Similarity=0.240 Sum_probs=115.4
Q ss_pred EEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccC
Q 046589 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188 (729)
Q Consensus 109 ~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 188 (729)
.++++++.++ .+|..+. ++|++|+|++|.++.+ |..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 5788888887 5666553 6899999999999865 4789999999999999999998888899999999999999999
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC
Q 046589 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLT 242 (729)
Q Consensus 189 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 242 (729)
+++..|..|.++++|++|+|++|.++...+..|..+++|++|++++|.+.....
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 998888899999999999999999997666679999999999999999875433
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.8e-15 Score=139.39 Aligned_cols=132 Identities=25% Similarity=0.217 Sum_probs=115.1
Q ss_pred EEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeecc
Q 046589 108 VYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187 (729)
Q Consensus 108 ~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N 187 (729)
..++++++.+. .+|..+ .++|++|++++|++++.++..|..+++|++|++++|++++..+..++.+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 35777778776 355443 379999999999999988888999999999999999999777777899999999999999
Q ss_pred CCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCC
Q 046589 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLT 242 (729)
Q Consensus 188 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 242 (729)
++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9998777788999999999999999996666667899999999999999986554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=140.28 Aligned_cols=130 Identities=23% Similarity=0.232 Sum_probs=114.7
Q ss_pred CCCCCCEEeccCCcCc-ccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCe
Q 046589 151 NLKRLKMLSLGENQLS-GSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQD 229 (729)
Q Consensus 151 ~l~~L~~L~Ls~N~l~-~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 229 (729)
..++|+.|++++|.++ +.+|..++.+++|++|++++|.+++. ..+.++++|++|++++|.+++.+|..++.+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3468999999999998 78999999999999999999999865 78999999999999999999878988888999999
Q ss_pred eeccCCcCCCCCChhhhccCCCCCEEEcccccccccCC---ccccCCCcCCeeccc
Q 046589 230 LDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIP---PEISHLKKLSDHYLG 282 (729)
Q Consensus 230 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~l~l~ 282 (729)
|++++|.+++......+..+++|++|++++|.+++..+ ..+..+++|+.++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999999842223678999999999999999997665 578889999988765
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.5e-16 Score=162.03 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=59.0
Q ss_pred CCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCc-EEEcCCCcCcccCCcccCCCCCC
Q 046589 354 CSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLE-KLDLSSNMLTGRIPKEIGNLRSI 432 (729)
Q Consensus 354 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L 432 (729)
+++|+.|+|++|+++...+..|.++.+|+.+++.+| ++.+.+..| .++++|+ .+++.+ .++...+..|.+|++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF---~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF---SNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT---TTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHh---hCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 456666666666666555555666666666666665 444444444 3344455 666665 4554445566666666
Q ss_pred CEEEccCCccccccCcCccCCCCCCEEE
Q 046589 433 QILKLNSNFFNGSIPMRLGDSTSLNILE 460 (729)
Q Consensus 433 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 460 (729)
+.+++++|.++..-+.+|.++++|+.++
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6666666666644455666666666554
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-15 Score=157.42 Aligned_cols=82 Identities=20% Similarity=0.386 Sum_probs=67.2
Q ss_pred cccccceEecC---CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNE---DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++. ++.+|++|||+++.... ..++.++||||+||++|||+||+.|+
T Consensus 142 dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~-----------------------~~~~~~~DiwslG~il~el~tg~~pf 198 (299)
T 3m2w_A 142 DVKPENLLYTSKRPNAILKLTDFGFAKETTG-----------------------EKYDKSCDMWSLGVIMYILLCGYPPF 198 (299)
T ss_dssp CCSGGGEEESSSSTTCCEEECCCTTCEECTT-----------------------CGGGGHHHHHHHHHHHHHHHHSSCSC
T ss_pred CCCHHHEEEecCCCCCcEEEecccccccccc-----------------------ccCCchhhHHHHHHHHHHHHHCCCCC
Confidence 99999999997 78999999998865321 23467899999999999999999998
Q ss_pred CCC-------------------c--------chH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPK-------------------F--------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~-------------------~--------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... + .+. +++..|++.+|++|||++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l 255 (299)
T 3m2w_A 199 YSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFM 255 (299)
T ss_dssp CC-------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCCcchhhhHHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHh
Confidence 520 0 001 799999999999999999874
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.3e-15 Score=141.18 Aligned_cols=133 Identities=15% Similarity=0.135 Sum_probs=96.6
Q ss_pred CCCCCCCcEEECCCCCCCCCCcccccCCC-CCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCC
Q 046589 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLK-RLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQL 203 (729)
Q Consensus 125 l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L 203 (729)
+.+.++|++|++++|+++.+ + .+..+. +|++|+|++|.+++. +.++.+++|++|+|++|++++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 44567788888888888765 3 344444 888888888888754 577888888888888888875544555788888
Q ss_pred cEEEccCCCCCCCCcc--ccCCCCCCCeeeccCCcCCCCCChh---hhccCCCCCEEEccccccc
Q 046589 204 KSLDFSGNGFNGTVPI--RLGELTRLQDLDLSDNLLSGSLTVS---LFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 204 ~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~Ls~N~l~ 263 (729)
++|++++|.++ .+|. .+..+++|++|++++|.++ .++.. .+..+++|++||++.|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888888886 4554 6777788888888888776 44433 4677777888877777654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.5e-16 Score=152.46 Aligned_cols=112 Identities=24% Similarity=0.275 Sum_probs=52.0
Q ss_pred cccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCC
Q 046589 148 QVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRL 227 (729)
Q Consensus 148 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 227 (729)
.+..+++|++|+|++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 34444444444444444442 33 4444444444444444444 334444444445555555554442 22 34444555
Q ss_pred CeeeccCCcCCCCCC-hhhhccCCCCCEEEccccccccc
Q 046589 228 QDLDLSDNLLSGSLT-VSLFTNLQSLSYLDVSNNLLSGN 265 (729)
Q Consensus 228 ~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~ 265 (729)
++|++++|.++ .++ ...+..+++|++|++++|.+.+.
T Consensus 118 ~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 118 RVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccc
Confidence 55555555544 222 13445555555555555555443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=7.3e-14 Score=133.20 Aligned_cols=135 Identities=20% Similarity=0.208 Sum_probs=114.9
Q ss_pred ccccCCCCCCEEeccCCcCcccCCccccCCC-CCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCC
Q 046589 147 PQVSNLKRLKMLSLGENQLSGSLPSQLGVLT-WLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELT 225 (729)
Q Consensus 147 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 225 (729)
+.+.++.+|++|++++|+++ .+|. +..+. +|++|++++|.+++. ..|.++++|++|++++|.+++..+..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 35677889999999999998 4555 55555 999999999999965 6899999999999999999965555569999
Q ss_pred CCCeeeccCCcCCCCCCh-hhhccCCCCCEEEcccccccccCCcc----ccCCCcCCeecccccccc
Q 046589 226 RLQDLDLSDNLLSGSLTV-SLFTNLQSLSYLDVSNNLLSGNIPPE----ISHLKKLSDHYLGINQFT 287 (729)
Q Consensus 226 ~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~l~l~~n~l~ 287 (729)
+|++|++++|.++ .++. ..+..+++|++|++++|.++ ..|.. +..+++|+.++++.|...
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999996 5663 47889999999999999998 45654 889999999999988764
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-14 Score=146.35 Aligned_cols=108 Identities=16% Similarity=0.112 Sum_probs=89.3
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+.|.....+|+|+||.||+|... +|+.||||.
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 35666778999999999999985 688999996
Q ss_pred -------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecc
Q 046589 625 -------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDV 661 (729)
Q Consensus 625 -------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~ 661 (729)
|+||+||+++.++.+|+++++
T Consensus 111 e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~---------------- 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPA---------------- 174 (286)
T ss_dssp ECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCC----------------
T ss_pred EecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEecc----------------
Confidence 999999999999999987332
Q ss_pred cccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----c----c-----------------h--HHHHhh
Q 046589 662 ASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK-----F----E-----------------D--KDIVVG 713 (729)
Q Consensus 662 ~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~-----~----~-----------------~--~~l~~~ 713 (729)
|++ .++.++|||||||++|||+||+.|+... + . + .+++.+
T Consensus 175 -----~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ 242 (286)
T 3uqc_A 175 -----TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAAR 242 (286)
T ss_dssp -----CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHH
T ss_pred -----ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHHH
Confidence 333 2578999999999999999999998631 0 0 0 179999
Q ss_pred cccCCCCCCCCccccC
Q 046589 714 CVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 714 c~~~~p~~Rp~~~~v~ 729 (729)
|++.+|++| |++|++
T Consensus 243 ~l~~dP~~R-s~~el~ 257 (286)
T 3uqc_A 243 SVQGDGGIR-SASTLL 257 (286)
T ss_dssp HHCTTSSCC-CHHHHH
T ss_pred HcccCCccC-CHHHHH
Confidence 999999999 998863
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-16 Score=152.95 Aligned_cols=153 Identities=26% Similarity=0.306 Sum_probs=128.8
Q ss_pred cCCcEEEEcCCCCCcCcCCc------cCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCC
Q 046589 104 LLRVVYQVLRTQSLKGPVSP------LLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLT 177 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~------~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~ 177 (729)
..++..++++.+.+.|.+|. .+..+++|++|++++|.+++. | .+.++++|++|++++|.++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 45677788888888888776 889999999999999999985 4 8899999999999999998 7888888889
Q ss_pred CCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCc-cccCCCCCCCeeeccCCcCCCCCCh---------hhhc
Q 046589 178 WLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVP-IRLGELTRLQDLDLSDNLLSGSLTV---------SLFT 247 (729)
Q Consensus 178 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~---------~~~~ 247 (729)
+|++|++++|++++ +| .+.++++|++|++++|+++...+ ..+..+++|++|++++|.+++.++. ..+.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 99999999999985 45 68899999999999999985333 4789999999999999998754331 2377
Q ss_pred cCCCCCEEEccccccc
Q 046589 248 NLQSLSYLDVSNNLLS 263 (729)
Q Consensus 248 ~l~~L~~L~Ls~N~l~ 263 (729)
.+++|++|| +|.++
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 888999887 56554
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-12 Score=137.16 Aligned_cols=264 Identities=11% Similarity=0.105 Sum_probs=144.7
Q ss_pred CCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEc
Q 046589 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDF 208 (729)
Q Consensus 129 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 208 (729)
..++.+.+.. .++.+...+|.++ +|+.+++..+ ++......|.+ .+|+.+.+.. .++..-+.+|.++++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 5566666653 3555666677664 6788877666 55455566666 4677777764 566566667777777777777
Q ss_pred cCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccc
Q 046589 209 SGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTG 288 (729)
Q Consensus 209 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 288 (729)
++|.++......|. ..+|+.+.+..+ ++ .++...|..+++|+.+++..| ++......|.
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~----------------- 246 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFR----------------- 246 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTT-----------------
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccc-----------------
Confidence 77777643333444 466777776643 43 455566666666666665442 1111111111
Q ss_pred cccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCC
Q 046589 289 SIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLS 368 (729)
Q Consensus 289 ~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 368 (729)
. .+|+.+.+. +.+...-...|..|++|+.+++.+|.+.
T Consensus 247 ----------------------------------------~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 247 ----------------------------------------E-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp ----------------------------------------T-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred ----------------------------------------c-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 1 234444442 2233344456666777777777666553
Q ss_pred -----CCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccc
Q 046589 369 -----GSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFN 443 (729)
Q Consensus 369 -----~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 443 (729)
...+..|.++++ |+.++|. +.++..-...|.+|++|+.+.+..| ++
T Consensus 285 ~~~~~~I~~~aF~~c~~---------------------------L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPK---------------------------LARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp CCTTCEECTTTTTTCTT---------------------------CCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred CCcccEECHHHhhCCcc---------------------------CCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 122233444444 4444444 2243333445555555555555433 43
Q ss_pred cccCcCccCCCCCCEEEcccccCCccCchhhhcCC-CCCEEeCCCCcC
Q 046589 444 GSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLA-QLQFLDLSYNNL 490 (729)
Q Consensus 444 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~LdLs~N~l 490 (729)
..-+.+|.++ +|+.+++++|.+....+..|.+++ +++.|.+..+.+
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 3334455555 566666666655544444555552 456666665543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-13 Score=125.84 Aligned_cols=105 Identities=22% Similarity=0.223 Sum_probs=56.9
Q ss_pred CcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccC
Q 046589 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSG 210 (729)
Q Consensus 131 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 210 (729)
.+++++++|.++.++. .+ .++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3455565555555332 22 24555666666666555555555555566666665555544444455555555555555
Q ss_pred CCCCCCCccccCCCCCCCeeeccCCcCC
Q 046589 211 NGFNGTVPIRLGELTRLQDLDLSDNLLS 238 (729)
Q Consensus 211 N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 238 (729)
|++++..+..|..+++|++|+|++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555444444555555555555555554
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.43 E-value=6.6e-13 Score=125.68 Aligned_cols=108 Identities=28% Similarity=0.323 Sum_probs=96.0
Q ss_pred CCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeecc
Q 046589 154 RLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLS 233 (729)
Q Consensus 154 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 233 (729)
..+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4689999999998 6787664 889999999999998889999999999999999999997777778999999999999
Q ss_pred CCcCCCCCChhhhccCCCCCEEEccccccccc
Q 046589 234 DNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGN 265 (729)
Q Consensus 234 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 265 (729)
+|+++ .++...|..+++|++|+|++|.+...
T Consensus 87 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccC-EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99998 56667789999999999999998754
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=124.18 Aligned_cols=104 Identities=22% Similarity=0.257 Sum_probs=50.3
Q ss_pred cEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCC
Q 046589 132 RVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGN 211 (729)
Q Consensus 132 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 211 (729)
+.+++++|+++.++. .+. ++|++|+|++|+|++..|..|+.+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~-~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCC-CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 445555555544322 221 44555555555555444555555555555555555555433333445555555555555
Q ss_pred CCCCCCccccCCCCCCCeeeccCCcCC
Q 046589 212 GFNGTVPIRLGELTRLQDLDLSDNLLS 238 (729)
Q Consensus 212 ~l~~~~p~~l~~l~~L~~L~L~~N~l~ 238 (729)
++++..+..|..+++|++|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555333333444555555555555443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=124.53 Aligned_cols=106 Identities=28% Similarity=0.351 Sum_probs=94.7
Q ss_pred CCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccC
Q 046589 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSD 234 (729)
Q Consensus 155 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 234 (729)
-+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999997 7888775 8999999999999988899999999999999999999976666789999999999999
Q ss_pred CcCCCCCChhhhccCCCCCEEEcccccccc
Q 046589 235 NLLSGSLTVSLFTNLQSLSYLDVSNNLLSG 264 (729)
Q Consensus 235 N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 264 (729)
|+++ .++...|..+++|++|+|++|.+..
T Consensus 91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred Cccc-eeCHHHhccccCCCEEEeCCCCccc
Confidence 9998 5666778999999999999999874
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-11 Score=133.56 Aligned_cols=107 Identities=7% Similarity=0.015 Sum_probs=76.4
Q ss_pred CCCcEEEcCCCcCc-----ccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCC
Q 046589 406 SQLEKLDLSSNMLT-----GRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQL 480 (729)
Q Consensus 406 ~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 480 (729)
++|+.+++.+|.+. ...+..|.+|++|+.+++.+ .++..-..+|.++++|+.+.|..| ++..-+.+|.++ +|
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L 347 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI 347 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence 34445555444433 34567899999999999994 577566788999999999999665 776677889999 99
Q ss_pred CEEeCCCCcCcccccccccccccccCCCCcccC-CCCCeEecCCCcCc
Q 046589 481 QFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYS-HNYRKFDLSYNMLS 527 (729)
Q Consensus 481 ~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ldls~N~l~ 527 (729)
+.+++++|.+.. ++.. .+..+ .++..+++..+.+.
T Consensus 348 ~~l~l~~n~~~~-l~~~-----------~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 348 KEVKVEGTTPPQ-VFEK-----------VWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEEEECCSSCCB-CCCS-----------SCCCSCTTCCEEEECGGGHH
T ss_pred CEEEEcCCCCcc-cccc-----------cccCCCCCccEEEeCHHHHH
Confidence 999999997653 1111 11223 35778888877654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-10 Score=125.57 Aligned_cols=310 Identities=13% Similarity=0.074 Sum_probs=162.3
Q ss_pred cCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCC
Q 046589 124 LLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQL 203 (729)
Q Consensus 124 ~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L 203 (729)
.+.++++|+.+.+.. .++.+...+|.++.+|+.+++..+ ++......|.++.+|+.+.+..+ +...-..+|.++..+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 455677777777764 366666677777778888877654 54445566777777777666543 443445556555443
Q ss_pred cEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeecccc
Q 046589 204 KSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGI 283 (729)
Q Consensus 204 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~ 283 (729)
+...... ........|.++.+|+.+.+.++. . .++...|....+|+.+++..+ ++......+.....|+.+.+..
T Consensus 143 ~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 143 EITIPEG--VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccCcc--ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 3333222 222334456667777777765542 2 355566666677776666554 3323334455555555443322
Q ss_pred ccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEec
Q 046589 284 NQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLS 363 (729)
Q Consensus 284 n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 363 (729)
+... +.........|+.+.+... +...-...+..+..++.+.+.
T Consensus 218 ~~~~-----------------------------------i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~ 261 (394)
T 4fs7_A 218 SLYY-----------------------------------LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQ 261 (394)
T ss_dssp TCCE-----------------------------------ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEEC
T ss_pred CceE-----------------------------------eehhhcccCCCceEEECCC-ceecccccccccccceeEEcC
Confidence 2110 0011112234444444332 122223345556666666665
Q ss_pred CCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccc
Q 046589 364 NNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFN 443 (729)
Q Consensus 364 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 443 (729)
.+... .....|..+..++.+....+.+. ...| ....+|+.+.+..+ ++..-...|.++.+|+.+++..+ ++
T Consensus 262 ~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F---~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~ 332 (394)
T 4fs7_A 262 NNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTF---YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE 332 (394)
T ss_dssp CTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTT---TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred CCcce-eeccccccccccceeccCceeec---cccc---cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence 55332 33444555555655555443221 1222 23344555665543 44344455666666666666533 44
Q ss_pred cccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCC
Q 046589 444 GSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSY 487 (729)
Q Consensus 444 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~ 487 (729)
..-..+|.++.+|+.+++..| ++..-..+|.++.+|+.+++..
T Consensus 333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 333455666666666666554 4434445666666666666543
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=7.1e-12 Score=133.17 Aligned_cols=102 Identities=22% Similarity=0.192 Sum_probs=52.3
Q ss_pred EECCCC-CCCCCCcccccCCCCCCEEeccC-CcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCC
Q 046589 134 LNLSQN-LLFGQPSPQVSNLKRLKMLSLGE-NQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGN 211 (729)
Q Consensus 134 L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 211 (729)
++.+++ ++++++. +..+++|++|+|++ |+|++..|..|+.+++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 4444322 55555555555553 5555444455555555555555555555555555555555555555555
Q ss_pred CCCCCCccccCCCCCCCeeeccCCcCC
Q 046589 212 GFNGTVPIRLGELTRLQDLDLSDNLLS 238 (729)
Q Consensus 212 ~l~~~~p~~l~~l~~L~~L~L~~N~l~ 238 (729)
+|++..+..+..+. |+.|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55533333333333 555555555554
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.3e-11 Score=126.41 Aligned_cols=103 Identities=18% Similarity=0.183 Sum_probs=92.6
Q ss_pred EEcCCC-CCcCcCCccCCCCCCCcEEECCC-CCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeecc
Q 046589 110 QVLRTQ-SLKGPVSPLLFDLSKLRVLNLSQ-NLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187 (729)
Q Consensus 110 l~l~~~-~l~~~~~~~l~~L~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N 187 (729)
++++++ .++. +|. +..+++|++|+|++ |.++++++..|+++++|++|+|++|+|++..|..|+++++|++|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 477777 7774 888 99999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCccccCCCCCcEEEccCCCCCC
Q 046589 188 SFTGEMPSELGDMKQLKSLDFSGNGFNG 215 (729)
Q Consensus 188 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 215 (729)
+|++..+..|..+. |++|+|++|.+..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99976666666666 9999999999874
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-13 Score=145.29 Aligned_cols=169 Identities=20% Similarity=0.143 Sum_probs=124.6
Q ss_pred HhcCCcEEEEcCCCCCcCcCCc----cCC-CCCCCcEEECCCCCCCCCCcccc-cCCCCCCEEeccCCcCcccCCccc--
Q 046589 102 ELLLRVVYQVLRTQSLKGPVSP----LLF-DLSKLRVLNLSQNLLFGQPSPQV-SNLKRLKMLSLGENQLSGSLPSQL-- 173 (729)
Q Consensus 102 ~~~~~~~~l~l~~~~l~~~~~~----~l~-~L~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l-- 173 (729)
+....++.+++++|.++..-.. .+. ..++|++|+|++|.++......+ ..+++|+.|+|++|.++......+
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 3467789999999998754222 233 23799999999999875433333 345689999999999976544444
Q ss_pred ---cCCCCCcEEEeeccCCCc----cCCccccCCCCCcEEEccCCCCCCC----CccccCCCCCCCeeeccCCcCCCCCC
Q 046589 174 ---GVLTWLETLSLCSNSFTG----EMPSELGDMKQLKSLDFSGNGFNGT----VPIRLGELTRLQDLDLSDNLLSGSLT 242 (729)
Q Consensus 174 ---~~L~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~ 242 (729)
...++|++|+|++|.++. .++..+..+++|++|+|++|.++.. ++..+...++|++|+|++|.++. ..
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~-~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD-TA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH-HH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH-HH
Confidence 346789999999999874 3455567889999999999998743 35567778899999999999863 22
Q ss_pred h----hhhccCCCCCEEEcccccccccCCcccc
Q 046589 243 V----SLFTNLQSLSYLDVSNNLLSGNIPPEIS 271 (729)
Q Consensus 243 ~----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 271 (729)
. ..+...++|++|||++|.++......+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 1 2345678999999999998765444443
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-09 Score=116.97 Aligned_cols=323 Identities=15% Similarity=0.098 Sum_probs=208.8
Q ss_pred CCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEe
Q 046589 105 LRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184 (729)
Q Consensus 105 ~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L 184 (729)
.+++.+.+. ++++.--...+.++++|+.+++..+ ++.+...+|..+..|+.+.+..+ +.......|.+...++....
T Consensus 71 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 456677775 3344222346778999999999865 77677788999999999888755 44455666766654443332
Q ss_pred eccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccc
Q 046589 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG 264 (729)
Q Consensus 185 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 264 (729)
+.....-..+|.++++|+.+.+..+. .......|.++.+|+.+.+..+ ++ .+....|.....|+.+.+..+...
T Consensus 148 --~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~- 221 (394)
T 4fs7_A 148 --EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY- 221 (394)
T ss_dssp --TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE-
T ss_pred --ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE-
Confidence 23333456789999999999998664 3355667889999999999876 44 566788889999998887665432
Q ss_pred cCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcce
Q 046589 265 NIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFI 344 (729)
Q Consensus 265 ~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 344 (729)
+.........|+.+.+... ++ ......+.....++.+.+..+..
T Consensus 222 -i~~~~~~~~~l~~i~ip~~-~~---------------------------------~i~~~~f~~~~~l~~~~~~~~~~- 265 (394)
T 4fs7_A 222 -LGDFALSKTGVKNIIIPDS-FT---------------------------------ELGKSVFYGCTDLESISIQNNKL- 265 (394)
T ss_dssp -ECTTTTTTCCCCEEEECTT-CC---------------------------------EECSSTTTTCSSCCEEEECCTTC-
T ss_pred -eehhhcccCCCceEEECCC-ce---------------------------------ecccccccccccceeEEcCCCcc-
Confidence 1122222234444332111 00 00112334455666666665533
Q ss_pred ecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCc
Q 046589 345 GRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPK 424 (729)
Q Consensus 345 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 424 (729)
......|..+..++.+....+.+ ....|..+.+|+.+.+..+ ++.+....| .++.+|+.++|..+ ++..-..
T Consensus 266 ~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF---~~c~~L~~i~lp~~-v~~I~~~ 337 (394)
T 4fs7_A 266 RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAF---ESCTSLVSIDLPYL-VEEIGKR 337 (394)
T ss_dssp EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTT---TTCTTCCEECCCTT-CCEECTT
T ss_pred eeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhh---cCCCCCCEEEeCCc-ccEEhHH
Confidence 24455677777788777766543 2345677788888887654 444444445 34556777888644 6655567
Q ss_pred ccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEE
Q 046589 425 EIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFL 483 (729)
Q Consensus 425 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 483 (729)
+|.++.+|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 8888999999998776 66455678888899999988765 32 344567666666543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-12 Score=140.30 Aligned_cols=162 Identities=19% Similarity=0.194 Sum_probs=86.2
Q ss_pred CCCCEEEccCCcceecCCCCC----c-CCCCCcEEEecCCCCCCCCccccc-CCCCCcEEEcCCCCCCCCcccccccc--
Q 046589 331 NQMESVWLNNNQFIGRIPLEV----G-NCSMLKYIRLSNNKLSGSIPRELN-DSESLVEINLDGNMLSGTIEDVFGRC-- 402 (729)
Q Consensus 331 ~~L~~L~L~~n~l~~~~p~~l----~-~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~-- 402 (729)
+.|+.|++++|.++......+ . ..++|++|+|++|.++......+. .+++|+.|+|++|.++......+...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456677777776653222111 1 225677777777776543222222 23466677777776654332222211
Q ss_pred CCCCCCcEEEcCCCcCccc----CCcccCCCCCCCEEEccCCccccc----cCcCccCCCCCCEEEcccccCCcc----C
Q 046589 403 TNLSQLEKLDLSSNMLTGR----IPKEIGNLRSIQILKLNSNFFNGS----IPMRLGDSTSLNILELGNNNLNGS----I 470 (729)
Q Consensus 403 ~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~ 470 (729)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|+.|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2234566677777766532 333345566666666666666532 233444555666666666666542 2
Q ss_pred chhhhcCCCCCEEeCCCCcCcc
Q 046589 471 PEKIADLAQLQFLDLSYNNLSR 492 (729)
Q Consensus 471 p~~l~~l~~L~~LdLs~N~l~~ 492 (729)
+..+...++|++|||++|.|+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 2333445666666666666653
|
| >2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-11 Score=130.13 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=62.5
Q ss_pred eeeccccccceEecCCc--------------------cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCc
Q 046589 621 AVKKDIKASNILLNEDF--------------------DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANE 680 (729)
Q Consensus 621 avk~dlk~~nill~~~~--------------------~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~ 680 (729)
+||||+||+||+++.++ .+||+|||+|+..... ...+|..|+|||.+.+.. +.
T Consensus 183 ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~------~~~gt~~y~aPE~~~g~~-~~ 255 (336)
T 2vuw_A 183 FEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG------IVVFCDVSMDEDLFTGDG-DY 255 (336)
T ss_dssp CBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT------EEECCCCTTCSGGGCCCS-SH
T ss_pred EeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC------cEEEeecccChhhhcCCC-cc
Confidence 79999999999999876 9999999999876431 236789999999887655 88
Q ss_pred hhhHHHHHHH-HHHHHhCCCCCC
Q 046589 681 RDNIYRFGVV-LLELVIRKQPTG 702 (729)
Q Consensus 681 ~~Dv~s~G~v-l~el~tg~~p~~ 702 (729)
++||||+|++ .+++++|..|+.
T Consensus 256 ~~Diwsl~~~~~~~~~~g~~p~~ 278 (336)
T 2vuw_A 256 QFDIYRLMKKENNNRWGEYHPYS 278 (336)
T ss_dssp HHHHHHHHHHHHTTCTTSCCTHH
T ss_pred ceehhhhhCCCCcccccccCCCc
Confidence 9999998877 667888888863
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-08 Score=110.10 Aligned_cols=143 Identities=13% Similarity=0.136 Sum_probs=87.9
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCCc---CcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEE
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQ---LSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSL 206 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 206 (729)
.|+.+.+..+ ++.+...+|.++.+|+.+.++.|. ++......|..+.+|+.+.+..+ ++.....+|..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4777777643 666667778888888888887664 55445566777777777766543 444555677777888888
Q ss_pred EccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCee
Q 046589 207 DFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDH 279 (729)
Q Consensus 207 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 279 (729)
.+..+ +.......|..+.+|+.+.+..+ ++ .+....|.. .+|+.+.+..+... .....+.....+...
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTI 210 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEE
T ss_pred cccce-eeeecccceecccccccccccce-ee-Eeccccccc-cceeEEEECCcccc-cccchhhhcccccee
Confidence 87644 33344556777777777777654 33 455455543 56777766543221 233344444444443
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-11 Score=137.94 Aligned_cols=76 Identities=13% Similarity=0.066 Sum_probs=47.0
Q ss_pred eeeccccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
+|||||||+|||++.++.+||+|||+|+...... ....+..||++|||||...+ .+..++|+||.|++++++.++.
T Consensus 360 IIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~-~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~ 435 (569)
T 4azs_A 360 FWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC-SWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPW 435 (569)
T ss_dssp CEESCCCGGGEEECTTSCEEECCCTTEESCC----CCSHHHHHHHHHHHHHHC------------------CCCCTTH
T ss_pred ceeccCchHhEEECCCCCEEEeecccCeeCCCCC-ccccCceechhhccHHHhCC-CCCCcccccccccchhhhcccc
Confidence 8999999999999999999999999998765422 22345678999999998754 4567899999999887765543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.91 E-value=8e-08 Score=103.66 Aligned_cols=312 Identities=9% Similarity=0.112 Sum_probs=171.3
Q ss_pred CCCcccccCCC-CCCEEeccCCcCcccCCccccCCCCCcEEEeeccC---CCccCCccccCCCCCcEEEccCCCCCCCCc
Q 046589 143 GQPSPQVSNLK-RLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS---FTGEMPSELGDMKQLKSLDFSGNGFNGTVP 218 (729)
Q Consensus 143 ~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~---l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 218 (729)
.+...+|.+++ .|+.+.+..+ ++.+...+|.++.+|+.+.+..|. ++..-..+|.++.+|+.+.+..+ ++....
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 34456777775 5999999755 666778889999999999998774 66556678888999998888665 444556
Q ss_pred cccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCC
Q 046589 219 IRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCK 298 (729)
Q Consensus 219 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~ 298 (729)
..|..+.+|+.+.+..+ +. .+....|....+|+.+.+..+ ++......|.. ..|+.+.+..+. +..-...+..|.
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~ 205 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECF 205 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCT
T ss_pred hhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhcc
Confidence 67888899999998754 33 566678888899999888654 33233333432 456555543321 111122333343
Q ss_pred CcccccccceeEEEEccCCCCCCCcchhcC-CCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccC
Q 046589 299 NFKSVLAELQIFTFSAGMNQLSGPLPSWLG-KWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELND 377 (729)
Q Consensus 299 ~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 377 (729)
.+... ....+... .....+. ......... ..+.....+..+.+.. .++......|..
T Consensus 206 ~l~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ip~-~v~~i~~~aF~~ 263 (394)
T 4gt6_A 206 ALSTI---------TSDSESYP-AIDNVLYEKSANGDYAL-----------IRYPSQREDPAFKIPN-GVARIETHAFDS 263 (394)
T ss_dssp TCCEE---------EECCSSSC-BSSSCEEEECTTSCEEE-----------EECCTTCCCSEEECCT-TEEEECTTTTTT
T ss_pred cccee---------cccccccc-cccceeecccccccccc-----------cccccccccceEEcCC-cceEcccceeee
Confidence 32211 00000000 0000000 000000000 0000111222222221 122222334555
Q ss_pred CCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCC
Q 046589 378 SESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLN 457 (729)
Q Consensus 378 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 457 (729)
+..|+.+.+..+... .....| .+.+.|+.+.+. +.++......|.++.+|+.+++..+ ++..-..+|.++.+|+
T Consensus 264 c~~L~~i~lp~~~~~-I~~~aF---~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 264 CAYLASVKMPDSVVS-IGTGAF---MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp CSSCCEEECCTTCCE-ECTTTT---TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cccccEEecccccce-ecCccc---ccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 556666665443221 222222 334456666664 3444444556777777777777654 4434456677777777
Q ss_pred EEEcccccCCccCchhhhcCCCCCEEeCCCCcC
Q 046589 458 ILELGNNNLNGSIPEKIADLAQLQFLDLSYNNL 490 (729)
Q Consensus 458 ~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l 490 (729)
.+.+..+ ++..-..+|.++++|+.+++.+|..
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 7777544 5544556777777787777777643
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.2e-09 Score=109.43 Aligned_cols=181 Identities=13% Similarity=0.116 Sum_probs=115.6
Q ss_pred CCcEEEEcCCCCCcC-cC-------CccCCCCCCCcEEECCCCCCC---------CCCcccccCCCCCCEEeccCCcCcc
Q 046589 105 LRVVYQVLRTQSLKG-PV-------SPLLFDLSKLRVLNLSQNLLF---------GQPSPQVSNLKRLKMLSLGENQLSG 167 (729)
Q Consensus 105 ~~~~~l~l~~~~l~~-~~-------~~~l~~L~~L~~L~Ls~N~l~---------~~~~~~~~~l~~L~~L~Ls~N~l~~ 167 (729)
.+++.|++....+.| .. ...+..+++|+.|.+..+... +.+...+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 457777777555543 21 223456789999998765432 123344567889999999988411
Q ss_pred cCCccccCCCCCcEEEeeccCCCccCCcccc--CCCCCcEEEccC--CCCCCC-----Ccccc--CCCCCCCeeeccCCc
Q 046589 168 SLPSQLGVLTWLETLSLCSNSFTGEMPSELG--DMKQLKSLDFSG--NGFNGT-----VPIRL--GELTRLQDLDLSDNL 236 (729)
Q Consensus 168 ~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~Ls~--N~l~~~-----~p~~l--~~l~~L~~L~L~~N~ 236 (729)
.++. +. +++|++|+|..|.+.......+. .+++|++|+|+. |...+. +...+ ..+++|++|+|++|.
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 2333 43 78999999998887643333343 789999999864 221111 11122 357899999999887
Q ss_pred CCCCCChhhh--ccCCCCCEEEccccccccc----CCccccCCCcCCeeccccccccc
Q 046589 237 LSGSLTVSLF--TNLQSLSYLDVSNNLLSGN----IPPEISHLKKLSDHYLGINQFTG 288 (729)
Q Consensus 237 l~~~~~~~~~--~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~l~l~~n~l~~ 288 (729)
+........+ ..+++|++|+|+.|.+.+. ++..+..+++|+.++++.|.++.
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 7532221122 2577899999999988764 23344567888888888887764
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.1e-08 Score=106.20 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=37.3
Q ss_pred chhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCccccc--CCCCCcEEEcC
Q 046589 324 PSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELN--DSESLVEINLD 387 (729)
Q Consensus 324 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~ 387 (729)
+..+..+++|+.|++++|.-. .++. + .+++|++|+|..+.+.......++ .+++|+.|+|+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 345556678888888777311 2232 3 367888888887776543333333 56777777764
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-06 Score=89.59 Aligned_cols=123 Identities=6% Similarity=0.087 Sum_probs=63.9
Q ss_pred CCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEE
Q 046589 128 LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLD 207 (729)
Q Consensus 128 L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 207 (729)
-.+|+.+.+.. .++.+...+|.++.+|+.++|..+ ++......|.+. +|+.+.+..+ ++..-..+|.. .+|+.+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~ 119 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFE 119 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCccccc
Confidence 34566666643 355555667777777777777544 554445556554 5666666433 44333344444 3677777
Q ss_pred ccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccc
Q 046589 208 FSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSN 259 (729)
Q Consensus 208 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 259 (729)
+..+- .......|.+ .+|+.+.+..+ ++ .+....|....+++...+..
T Consensus 120 lp~~~-~~i~~~~F~~-~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 120 FPGAT-TEIGNYIFYN-SSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CCTTC-CEECTTTTTT-CCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECT
T ss_pred CCCcc-cccccccccc-ceeeeeeccce-ee-ccccchhccccccccccccc
Confidence 76542 2122223332 34555544332 22 23334455556666655544
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.7e-06 Score=88.47 Aligned_cols=303 Identities=11% Similarity=0.068 Sum_probs=152.5
Q ss_pred ccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCC
Q 046589 147 PQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTR 226 (729)
Q Consensus 147 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 226 (729)
+++....+|+.+.+.. .++.+...+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ ++......|.. ++
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 3455566788888764 355456677888888999888644 665666677776 6777776543 44233334443 47
Q ss_pred CCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCCCccccccc
Q 046589 227 LQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAE 306 (729)
Q Consensus 227 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~ 306 (729)
|+.+.+..+- + .+....|.+. +|+...+..+ ++......+.....++......+..........
T Consensus 115 L~~i~lp~~~-~-~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~------------ 178 (379)
T 4h09_A 115 LDDFEFPGAT-T-EIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV------------ 178 (379)
T ss_dssp CSEEECCTTC-C-EECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE------------
T ss_pred cccccCCCcc-c-cccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccce------------
Confidence 8888776542 2 3443445443 4555544332 222333344444555444333221110000000
Q ss_pred ceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEc
Q 046589 307 LQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINL 386 (729)
Q Consensus 307 l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 386 (729)
.. +. .......+.....+..+.+.... .......+..+.+|+.+.+..+ +.......+..+..|+.+.+
T Consensus 179 ----~~----~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~l 247 (379)
T 4h09_A 179 ----LY----NK-NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAI 247 (379)
T ss_dssp ----EE----ET-TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEE
T ss_pred ----ec----cc-ccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEc
Confidence 00 00 00111112222333333333221 1223344555566666666543 33233445556666666666
Q ss_pred CCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccC
Q 046589 387 DGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNL 466 (729)
Q Consensus 387 ~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 466 (729)
..+ ++......| .+..+|+.+.+..+ +.......|.++.+|+.+.+.++.++..-..+|.++.+|+.+.|..+ +
T Consensus 248 p~~-v~~I~~~aF---~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l 321 (379)
T 4h09_A 248 PKN-VTSIGSFLL---QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-L 321 (379)
T ss_dssp CTT-CCEECTTTT---TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred CCC-ccEeCcccc---ceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-c
Confidence 544 332222333 23344555665433 33334455666667777766666665444556666666666666543 4
Q ss_pred CccCchhhhcCCCCCEEeCCC
Q 046589 467 NGSIPEKIADLAQLQFLDLSY 487 (729)
Q Consensus 467 ~~~~p~~l~~l~~L~~LdLs~ 487 (729)
+..-..+|.++.+|+.+.+..
T Consensus 322 ~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 322 KTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEECTTTTTTCTTCCCCCCCT
T ss_pred cEEHHHHhhCCCCCCEEEECC
Confidence 434445666666666665543
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.6e-08 Score=111.81 Aligned_cols=75 Identities=19% Similarity=0.214 Sum_probs=59.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc------eecccccccccCccccCC--CCCCchhhHHHHHHHHHHHHh
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI------STDVASAISYVPPEYGRA--RKANERDNIYRFGVVLLELVI 696 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~------~~~~~~~~~y~ape~~~~--~~~~~~~Dv~s~G~vl~el~t 696 (729)
|+||+||+++. .+|++|||+++......... .....+|.+|+|||.... ..|+...|+|+..+-..+-+.
T Consensus 456 DiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~ 533 (540)
T 3en9_A 456 DLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVE 533 (540)
T ss_dssp TCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred CCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999998 99999999999865321111 124578999999998765 567788899999998888887
Q ss_pred CCCCC
Q 046589 697 RKQPT 701 (729)
Q Consensus 697 g~~p~ 701 (729)
++.++
T Consensus 534 ~r~rY 538 (540)
T 3en9_A 534 RRARY 538 (540)
T ss_dssp TCSCC
T ss_pred hcccc
Confidence 77553
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=4.7e-08 Score=93.44 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=44.8
Q ss_pred cCCCCCCCcEEECCCC-CCCCC----CcccccCCCCCCEEeccCCcCcccC----CccccCCCCCcEEEeeccCCCcc--
Q 046589 124 LLFDLSKLRVLNLSQN-LLFGQ----PSPQVSNLKRLKMLSLGENQLSGSL----PSQLGVLTWLETLSLCSNSFTGE-- 192 (729)
Q Consensus 124 ~l~~L~~L~~L~Ls~N-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~L~~L~~L~Ls~N~l~~~-- 192 (729)
.+...++|++|+|++| .+... +...+...++|++|+|++|.|.... ...+...+.|++|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444566667777766 65432 2233445566666666666665321 22233334555555555555421
Q ss_pred --CCccccCCCCCcEEEc--cCCCCC
Q 046589 193 --MPSELGDMKQLKSLDF--SGNGFN 214 (729)
Q Consensus 193 --~p~~l~~l~~L~~L~L--s~N~l~ 214 (729)
+...+...+.|++|+| ++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2233344444444444 444443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.8e-08 Score=99.02 Aligned_cols=80 Identities=26% Similarity=0.369 Sum_probs=39.2
Q ss_pred CCCCCcEEEeeccCCCc--cCCccccCCCCCcEEEccCCCCCCCCccccCCCC--CCCeeeccCCcCCCCCC------hh
Q 046589 175 VLTWLETLSLCSNSFTG--EMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELT--RLQDLDLSDNLLSGSLT------VS 244 (729)
Q Consensus 175 ~L~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~~------~~ 244 (729)
++++|++|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|.+.+.++ ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 34555555555555554 2334445555666666666655532 1222222 55555555555544333 12
Q ss_pred hhccCCCCCEEE
Q 046589 245 LFTNLQSLSYLD 256 (729)
Q Consensus 245 ~~~~l~~L~~L~ 256 (729)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 344555555554
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-07 Score=89.04 Aligned_cols=62 Identities=23% Similarity=0.332 Sum_probs=27.7
Q ss_pred CCCCCEEEccCCccccc----cCcCccCCCCCCEEEc--ccccCCcc----CchhhhcCCCCCEEeCCCCcC
Q 046589 429 LRSIQILKLNSNFFNGS----IPMRLGDSTSLNILEL--GNNNLNGS----IPEKIADLAQLQFLDLSYNNL 490 (729)
Q Consensus 429 l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~LdLs~N~l 490 (729)
.++|++|+|++|.|... +...+...++|+.|+| ++|.+... +.+.+...++|+.|+|++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 34455555555544422 2233334444555555 44555432 222333344555555555544
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.18 E-value=8.6e-07 Score=89.10 Aligned_cols=102 Identities=25% Similarity=0.252 Sum_probs=68.5
Q ss_pred CCCCcE--EECCCCCCCC---CCcccccCCCCCCEEeccCCcCcc--cCCccccCCCCCcEEEeeccCCCccCCccccCC
Q 046589 128 LSKLRV--LNLSQNLLFG---QPSPQVSNLKRLKMLSLGENQLSG--SLPSQLGVLTWLETLSLCSNSFTGEMPSELGDM 200 (729)
Q Consensus 128 L~~L~~--L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l 200 (729)
.+.|+. ++++.|.... ...-...++++|+.|+||+|+|++ .+|..+..+++|++|+|++|++++. ..+..+
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l 217 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI 217 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence 334444 5666664321 111122457788888888888876 4556677888888888888888754 334444
Q ss_pred C--CCcEEEccCCCCCCCCcc-------ccCCCCCCCeee
Q 046589 201 K--QLKSLDFSGNGFNGTVPI-------RLGELTRLQDLD 231 (729)
Q Consensus 201 ~--~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~ 231 (729)
. +|++|+|++|.+.+.+|. .+..+++|+.||
T Consensus 218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4 888889988888766552 366788888886
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.82 E-value=5.3e-06 Score=77.38 Aligned_cols=34 Identities=9% Similarity=0.234 Sum_probs=17.1
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCC
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGEN 163 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 163 (729)
+|+.||+++|.++..--..+..+++|+.|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555554433333445555555555555
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.72 E-value=7.4e-06 Score=76.37 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=48.8
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCcEEEeeccC-CCccCCccccCC----CCCcEEEccCCC-CCCCCccccCCCCC
Q 046589 153 KRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS-FTGEMPSELGDM----KQLKSLDFSGNG-FNGTVPIRLGELTR 226 (729)
Q Consensus 153 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 226 (729)
.+|+.|||+++.|+...-..+.++++|++|+|++|. ++..--..+..+ ++|++|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 367888888888776655666777777777777774 443222223333 246666666653 54333334445555
Q ss_pred CCeeeccCC
Q 046589 227 LQDLDLSDN 235 (729)
Q Consensus 227 L~~L~L~~N 235 (729)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555555
|
| >1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=8.9e-06 Score=83.11 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=23.1
Q ss_pred cccccceEecCCccEEEeecCCcccc
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLI 650 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~ 650 (729)
|+||.||+++ ++.+||+|||+|+..
T Consensus 218 Dlkp~NILl~-~~~vkl~DFG~a~~~ 242 (282)
T 1zar_A 218 DLSQYNVLVS-EEGIWIIDFPQSVEV 242 (282)
T ss_dssp CCSTTSEEEE-TTEEEECCCTTCEET
T ss_pred CCCHHHEEEE-CCcEEEEECCCCeEC
Confidence 9999999999 999999999998653
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00019 Score=68.12 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=28.5
Q ss_pred CCCcEEECCCC-CCCCC----CcccccCCCCCCEEeccCCcCcccCCcc----ccCCCCCcEEEeeccCCC
Q 046589 129 SKLRVLNLSQN-LLFGQ----PSPQVSNLKRLKMLSLGENQLSGSLPSQ----LGVLTWLETLSLCSNSFT 190 (729)
Q Consensus 129 ~~L~~L~Ls~N-~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~L~~L~~L~Ls~N~l~ 190 (729)
+.|+.|+|++| +|... +...+..-+.|+.|+|++|+|....-.. +..-+.|++|+|++|.|.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 44555666553 44321 1223344455666666666665322222 223344555555555544
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00059 Score=64.71 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=73.2
Q ss_pred cCCCCCCEEeccCC-cCccc----CCccccCCCCCcEEEeeccCCCc----cCCccccCCCCCcEEEccCCCCCCC----
Q 046589 150 SNLKRLKMLSLGEN-QLSGS----LPSQLGVLTWLETLSLCSNSFTG----EMPSELGDMKQLKSLDFSGNGFNGT---- 216 (729)
Q Consensus 150 ~~l~~L~~L~Ls~N-~l~~~----~p~~l~~L~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~---- 216 (729)
.+-+.|+.|+|++| +|... +-+.+..-+.|++|+|++|.+.. .+...+..-+.|++|+|+.|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45568999999985 77532 33445666788999999998863 3344455677888888888888743
Q ss_pred CccccCCCCCCCeeeccCCcCCCCCC-------hhhhccCCCCCEEEcccccc
Q 046589 217 VPIRLGELTRLQDLDLSDNLLSGSLT-------VSLFTNLQSLSYLDVSNNLL 262 (729)
Q Consensus 217 ~p~~l~~l~~L~~L~L~~N~l~~~~~-------~~~~~~l~~L~~L~Ls~N~l 262 (729)
+-+.+..-+.|++|+|++|... .+. ...+..-+.|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~-~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQS-VLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSC-CCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCc-CcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2334455567888888765321 111 13345566777787776654
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0081 Score=53.00 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=36.6
Q ss_pred EEEccCCccc-cccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCc
Q 046589 434 ILKLNSNFFN-GSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491 (729)
Q Consensus 434 ~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 491 (729)
.++.+++.++ ..+|..+ ..+|+.|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 2344332 235777788888877666667777888888888888763
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0078 Score=53.11 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=17.5
Q ss_pred CCcEEEeeccCCCccCCccccCCCCCcEEEccCCCC
Q 046589 178 WLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGF 213 (729)
Q Consensus 178 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 213 (729)
+|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 344555555555443344444455555555555544
|
| >4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0028 Score=66.90 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.9
Q ss_pred cccccCCCCCCcceEEEeecCCCCceeee
Q 046589 595 FCEKNGIGGGGFGTVFKGTMPDGKTVAVK 623 (729)
Q Consensus 595 ~~~~~~ig~g~~~~v~k~~~~~~~~~avk 623 (729)
+.....||.|++|.||+|...+|+.||||
T Consensus 97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvK 125 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIVADEKGKQKVLK 125 (397)
T ss_dssp SEEEEEEEECSSEEEEEEECTTCCEEEEE
T ss_pred EEecCEeeeCCceEEEEEECCCCCEEEEE
Confidence 34556799999999999999999999999
|
| >1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.019 Score=57.28 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=26.3
Q ss_pred eeeccccccceEecCCccEEEeecCCccccC
Q 046589 621 AVKKDIKASNILLNEDFDAKVLDFGLARLIS 651 (729)
Q Consensus 621 avk~dlk~~nill~~~~~~kl~dfgl~~~~~ 651 (729)
.||+|+||.||+++. .++++|||+|....
T Consensus 192 ivHrDlkp~NILl~~--~~~liDFG~a~~~~ 220 (258)
T 1zth_A 192 LVHADLSEYNIMYID--KVYFIDMGQAVTLR 220 (258)
T ss_dssp EECSSCSTTSEEESS--SEEECCCTTCEETT
T ss_pred EEeCCCCHHHEEEcC--cEEEEECcccccCC
Confidence 789999999999998 99999999997653
|
| >3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A | Back alignment and structure |
|---|
Probab=91.41 E-value=0.029 Score=57.35 Aligned_cols=83 Identities=14% Similarity=0.196 Sum_probs=51.2
Q ss_pred CCCceeeeccccccceEecC--CccEEEeecCCccccCCCCCccee-------------cccccccccC-ccccCCCCCC
Q 046589 616 DGKTVAVKKDIKASNILLNE--DFDAKVLDFGLARLISDCKSHIST-------------DVASAISYVP-PEYGRARKAN 679 (729)
Q Consensus 616 ~~~~~avk~dlk~~nill~~--~~~~kl~dfgl~~~~~~~~~~~~~-------------~~~~~~~y~a-pe~~~~~~~~ 679 (729)
...++.+|.|+++.||+++. +..+.+.||+.+....+..+-... .....+++.. |+.. ....
T Consensus 188 ~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~--~r~~ 265 (304)
T 3sg8_A 188 KYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVL--EKYR 265 (304)
T ss_dssp CCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCHHHHH--HHHH
T ss_pred cCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCcHHHH--HHHH
Confidence 45678999999999999997 567889999987653321000000 0000011111 2211 1112
Q ss_pred chhhHHHHHHHHHHHHhCCCC
Q 046589 680 ERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 680 ~~~Dv~s~G~vl~el~tg~~p 700 (729)
...+.|++|+++|++.+|..+
T Consensus 266 ~~~~~~~l~~~~~~~~~g~~~ 286 (304)
T 3sg8_A 266 MKEKYWSFEKIIYGKEYGYMD 286 (304)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHH
Confidence 235899999999999999866
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 729 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-22 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-21 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 9e-19 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-19 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-15 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-15 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 9e-13 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-11 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-17 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-17 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-16 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-15 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-17 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-16 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-14 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-08 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-05 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 4e-16 | |
| d1fmka3 | 285 | d.144.1.7 (A:249-533) c-src tyrosine kinase {Human | 9e-05 | |
| d1uwha_ | 276 | d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) | 5e-15 | |
| d1qpca_ | 272 | d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom | 9e-15 | |
| d1qpca_ | 272 | d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom | 5e-05 | |
| d2java1 | 269 | d.144.1.7 (A:3-271) Serine/threonine-protein kinas | 2e-14 | |
| d1k2pa_ | 258 | d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum | 2e-14 | |
| d1k2pa_ | 258 | d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum | 2e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-14 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 6e-11 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d1sm2a_ | 263 | d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu | 3e-14 | |
| d1sm2a_ | 263 | d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu | 8e-05 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 4e-14 | |
| d1s9ja_ | 322 | d.144.1.7 (A:) Dual specificity mitogen-activated | 0.002 | |
| d1mqba_ | 283 | d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum | 1e-13 | |
| d1r0pa_ | 311 | d.144.1.7 (A:) Hepatocyte growth factor receptor, | 1e-13 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 2e-13 | |
| d1opja_ | 287 | d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou | 0.001 | |
| d1vjya_ | 303 | d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human | 3e-13 | |
| d1vjya_ | 303 | d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human | 0.003 | |
| d1lufa_ | 301 | d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n | 4e-13 | |
| d1lufa_ | 301 | d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n | 0.002 | |
| d1xkka_ | 317 | d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb- | 5e-13 | |
| d1jpaa_ | 299 | d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou | 7e-13 | |
| d2j4za1 | 263 | d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur | 2e-12 | |
| d1t4ha_ | 270 | d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa | 2e-12 | |
| d2jfla1 | 288 | d.144.1.7 (A:21-308) STE20-like serine/threonine-p | 6e-12 | |
| d1uu3a_ | 288 | d.144.1.7 (A:) 3-phosphoinositide dependent protei | 9e-12 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 9e-12 | |
| d1yhwa1 | 293 | d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [ | 0.002 | |
| d1byga_ | 262 | d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) | 1e-11 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-11 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 6e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.002 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 1e-11 | |
| d1u5ra_ | 309 | d.144.1.7 (A:) Serine/threonine protein kinase TAO | 0.001 | |
| d1mp8a_ | 273 | d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma | 2e-11 | |
| d1xbba_ | 277 | d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human | 3e-11 | |
| d1xbba_ | 277 | d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 4e-11 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 1e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 4e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1rjba_ | 325 | d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s | 6e-11 | |
| d1u46a_ | 273 | d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum | 1e-10 | |
| d1fota_ | 316 | d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni | 1e-10 | |
| d1fvra_ | 309 | d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [ | 2e-10 | |
| d1ywna1 | 299 | d.144.1.7 (A:818-1166) Vascular endothelial growth | 6e-10 | |
| d1nvra_ | 271 | d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 { | 7e-10 | |
| d1u59a_ | 285 | d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum | 9e-10 | |
| d1unla_ | 292 | d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H | 1e-09 | |
| d1gz8a_ | 298 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H | 2e-09 | |
| d1ua2a_ | 299 | d.144.1.7 (A:) Cell division protein kinase 7, CDK | 2e-09 | |
| d1ua2a_ | 299 | d.144.1.7 (A:) Cell division protein kinase 7, CDK | 0.004 | |
| d1koaa2 | 350 | d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C | 2e-09 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 2e-09 | |
| d1xjda_ | 320 | d.144.1.7 (A:) Protein kinase C, theta type {Human | 0.004 | |
| d1p4oa_ | 308 | d.144.1.7 (A:) Insulin-like growth factor 1 recept | 3e-09 | |
| d1t46a_ | 311 | d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens | 3e-09 | |
| d1t46a_ | 311 | d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 8e-09 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 8e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.003 | |
| d1blxa_ | 305 | d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H | 3e-08 | |
| d1o6la_ | 337 | d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap | 4e-08 | |
| d1phka_ | 277 | d.144.1.7 (A:) gamma-subunit of glycogen phosphory | 4e-08 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 7e-08 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 2e-06 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 2e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.001 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.001 | |
| d1ob3a_ | 286 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod | 7e-08 | |
| d1ob3a_ | 286 | d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod | 2e-04 | |
| d1pmea_ | 345 | d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien | 1e-07 | |
| d1pmea_ | 345 | d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien | 8e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-07 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 3e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 6e-04 | |
| d3blha1 | 318 | d.144.1.7 (A:8-325) Cell division protein kinase 9 | 1e-07 | |
| d1o6ya_ | 277 | d.144.1.7 (A:) Mycobacterial protein kinase PknB, | 2e-07 | |
| d1csna_ | 293 | d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast | 2e-07 | |
| d1csna_ | 293 | d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast | 0.004 | |
| d1tkia_ | 321 | d.144.1.7 (A:) Titin, kinase domain {Human (Homo s | 2e-07 | |
| d1omwa3 | 364 | d.144.1.7 (A:186-549) G-protein coupled receptor k | 2e-07 | |
| d1fgka_ | 299 | d.144.1.7 (A:) Fibroblast growth factor receptor 1 | 2e-07 | |
| d1jksa_ | 293 | d.144.1.7 (A:) Death-associated protein kinase, Da | 4e-07 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 5e-07 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 1e-05 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 1e-04 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 6e-04 | |
| d1xwsa_ | 273 | d.144.1.7 (A:) Proto-oncogene serine/threonine-pro | 7e-07 | |
| d1koba_ | 352 | d.144.1.7 (A:) Twitchin, kinase domain {California | 8e-07 | |
| d1rdqe_ | 350 | d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni | 4e-06 | |
| d2ozaa1 | 335 | d.144.1.7 (A:51-385) MAP kinase activated protein | 6e-06 | |
| d1a06a_ | 307 | d.144.1.7 (A:) Calmodulin-dependent protein kinase | 2e-05 | |
| d1vzoa_ | 322 | d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5 | 2e-05 | |
| d3bqca1 | 328 | d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu | 4e-05 | |
| d1cm8a_ | 346 | d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s | 8e-05 | |
| d1ckia_ | 299 | d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n | 9e-05 | |
| d1q5ka_ | 350 | d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs | 1e-04 | |
| d1q5ka_ | 350 | d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs | 0.002 | |
| d2gfsa1 | 348 | d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa | 1e-04 | |
| d1zara2 | 191 | d.144.1.9 (A:91-281) Rio2 serine protein kinase C- | 2e-04 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 2e-04 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.001 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-04 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 2e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 2e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 3e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.002 | |
| d2b1pa1 | 355 | d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3 | 3e-04 | |
| d2b1pa1 | 355 | d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3 | 0.003 | |
| d1q8ya_ | 362 | d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces | 4e-04 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.002 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.002 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 98.5 bits (244), Expect = 1e-22
Identities = 73/418 (17%), Positives = 147/418 (35%), Gaps = 61/418 (14%)
Query: 176 LTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDN 235
L L + T + D+ Q+ +L G + L L ++ S+N
Sbjct: 21 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGV--EYLNNLTQINFSNN 76
Query: 236 LLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELG 295
L+ ++ NL L + ++NN ++ P + +++
Sbjct: 77 QLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 296 NCK------NFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPL 349
+ + A + + L +E + +++N+
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV- 192
Query: 350 EVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLE 409
+ + L+ + +NN++S P + +L E++L+GN L G +L+ L
Sbjct: 193 -LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD-----IGTLASLTNLT 244
Query: 410 KLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGS 469
LDL++N ++ P + L + LKL +N + P+ + + N
Sbjct: 245 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE----LNENQLE 298
Query: 470 IPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGP 529
I++L L +L L +NN+S +I +S ++ + N +S
Sbjct: 299 DISPISNLKNLTYLTLYFNNIS--------------DISPVSSLTKLQRLFFANNKVSDV 344
Query: 530 IPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
SL +L+ L+ N++S L P NL +T L L+
Sbjct: 345 -----------------SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 93.9 bits (232), Expect = 4e-21
Identities = 66/382 (17%), Positives = 134/382 (35%), Gaps = 38/382 (9%)
Query: 127 DLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186
L++ L + + S ++L ++ L + S+ + L L ++ +
Sbjct: 20 ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSN 75
Query: 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQD---LDLSDNLLSGSLTV 243
N T P L ++ +L + + N P+ ++D +LT
Sbjct: 76 NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 244 SLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSV 303
L S + D+S ++ + L + + +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 304 LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLS 363
+ + A NQ+S P + ++ + LN NQ + + + L + L+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249
Query: 364 NNKLSGSIPRELNDSESLVEINLDGNMLSGTIE-----------------DVFGRCTNLS 406
NN++S P L+ L E+ L N +S + +NL
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307
Query: 407 QLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNL 466
L L L N ++ P + +L +Q L +N + L + T++N L G+N +
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363
Query: 467 NGSIPEKIADLAQLQFLDLSYN 488
+ P +A+L ++ L L+
Sbjct: 364 SDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 86.6 bits (213), Expect = 9e-19
Identities = 56/395 (14%), Positives = 120/395 (30%), Gaps = 51/395 (12%)
Query: 199 DMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVS 258
+ + TV +L ++ L + ++ L +L+ ++ S
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS 74
Query: 259 NNLLSGNIP-PEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMN 317
NN L+ P ++ L + + I T + +
Sbjct: 75 NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134
Query: 318 QLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELND 377
+ + + + + G ++ + L + + + +
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194
Query: 378 S-ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILK 436
+L + N +S L+ L++L L+ N L + +L ++ L
Sbjct: 195 KLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 247
Query: 437 LNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILS 496
L +N + P L T L L+LG N ++ P L+ +
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNISP----------LAGLTALTNLELNEN 295
Query: 497 KHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSV 556
+ N+ +L+Y L +N +S P + L+
Sbjct: 296 QLEDISPISNLKNLTY------LTLYFNNISDISP-----------------VSSLTKLQ 332
Query: 557 KLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
+L + NK+S +S NL + L +N+
Sbjct: 333 RLFFANNKVSD--VSSLANLTNINWLSAGHNQISD 365
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 86.3 bits (212), Expect = 5e-19
Identities = 63/310 (20%), Positives = 118/310 (38%), Gaps = 16/310 (5%)
Query: 164 QLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPI--RL 221
Q+ L + + +WL T C+ ++ G + ++ +LD SG PI L
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72
Query: 222 GELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYL 281
L L L + L L YL +++ +SG IP +S +K L
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 282 GINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNN 341
N +G++ + + N + N++SG +P G ++++ + +
Sbjct: 133 SYNALSGTLPPSISSLPNLV---------GITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 342 QFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGR 401
+ L ++ LS N L G ++ +I+L N + G+
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS----LAFDLGK 239
Query: 402 CTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILEL 461
L LDL +N + G +P+ + L+ + L ++ N G IP + G+ ++
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAY 298
Query: 462 GNNNLNGSIP 471
NN P
Sbjct: 299 ANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 76.3 bits (186), Expect = 1e-15
Identities = 61/292 (20%), Positives = 106/292 (36%), Gaps = 33/292 (11%)
Query: 247 TNLQSLSYLDVSNNLLSGN--IPPEISHLKKLSDHYL-GINQFTGSIQSELGNCKNFKSV 303
T ++ LD+S L IP +++L L+ Y+ GIN G I +
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT----- 101
Query: 304 LAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLS 363
Q+ +SG +P +L + + ++ + N G +P + + L I
Sbjct: 102 ----QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 364 NNKLSGSIPRELNDSESLVE-INLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRI 422
N++SG+IP L + + N L+G I F S +
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL-----SRNMLEGD 212
Query: 423 PKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQF 482
+ + ++G S +LN L+L NN + G++P+ + L L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 483 LDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYN-MLSG-PIPK 532
L++S+NNL IP + + N L G P+P
Sbjct: 273 LNVSFNNLCGE-------------IPQGGNLQRFDVSAYANNKCLCGSPLPA 311
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 76.3 bits (186), Expect = 1e-15
Identities = 57/263 (21%), Positives = 100/263 (38%), Gaps = 15/263 (5%)
Query: 130 KLRVLNLSQNLLFGQPS--PQVSNLKRLKMLSLGEN-QLSGSLPSQLGVLTWLETLSLCS 186
++ L+LS L ++NL L L +G L G +P + LT L L +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLF 246
+ +G +P L +K L +LDFS N +GT+P + L L + N +SG++ S
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 247 TNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAE 306
+ + + + +S N L+G IPP ++ S + +
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFAN-----------LNLAFVDLSRNMLEGDASVLFGS 219
Query: 307 LQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNK 366
+ +G + + L NN+ G +P + L + +S N
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 367 LSGSIPRELNDSESLVEINLDGN 389
L G IP + + + N
Sbjct: 280 LCGEIP-QGGNLQRFDVSAYANN 301
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 67.5 bits (163), Expect = 9e-13
Identities = 52/255 (20%), Positives = 87/255 (34%), Gaps = 11/255 (4%)
Query: 338 LNNNQFIGR--IPLEVGNCSMLKYIRLSNN-KLSGSIPRELNDSESLVEINLDGNMLSGT 394
L+ IP + N L ++ + L G IP + L + +
Sbjct: 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN---V 113
Query: 395 IEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDST 454
+ + + L LD S N L+G +P I +L ++ + + N +G+IP G +
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
Query: 455 SLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSH 514
L + N L F+DLS N L S + I S
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 515 NYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFG 574
+ + +L + + G +P+ L L LN+S N L +P G
Sbjct: 234 AFDLGK--VGLSKNLNGLDLRNNR--IYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGG 288
Query: 575 NLNGLTNLDLSYNEF 589
NL + N+
Sbjct: 289 NLQRFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 64.0 bits (154), Expect = 1e-11
Identities = 43/270 (15%), Positives = 92/270 (34%), Gaps = 10/270 (3%)
Query: 324 PSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG--SIPRELNDSESL 381
P+ L W + N ++G + + + LS L IP L + L
Sbjct: 21 PTTLSSWL--PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78
Query: 382 VEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNF 441
+ + G + + L+QL L ++ ++G IP + ++++ L + N
Sbjct: 79 NFLYIGGIN--NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136
Query: 442 FNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSY 501
+G++P + +L + N ++G+IP+ ++L N L+
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR----LTGKIPP 192
Query: 502 FHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLS 561
+ + + + +G L+L
Sbjct: 193 TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252
Query: 562 GNKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
N++ +P L L +L++S+N G
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 46.7 bits (109), Expect = 6e-06
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGS 168
LR + G + L L L LN+S N L G+ PQ NL+R + + N+
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCG 306
Query: 169 LP 170
P
Sbjct: 307 SP 308
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 82.0 bits (201), Expect = 1e-17
Identities = 56/277 (20%), Positives = 95/277 (34%), Gaps = 40/277 (14%)
Query: 168 SLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRL 227
+P L L L +N T + ++K L +L N + P L +L
Sbjct: 24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 228 QDLDLSDNLLSG--------------------SLTVSLFTNLQSLSYLDVSN--NLLSGN 265
+ L LS N L + S+F L + +++ SG
Sbjct: 82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141
Query: 266 IPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPS 325
+KKLS + T Q + L EL + N+++ +
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPS-------LTELHL-----DGNKITKVDAA 189
Query: 326 WLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEIN 385
L N + + L+ N + N L+ + L+NNKL +P L D + + +
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 248
Query: 386 LDGNMLSGTIEDVF---GRCTNLSQLEKLDLSSNMLT 419
L N +S + F G T + + L SN +
Sbjct: 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.6 bits (200), Expect = 2e-17
Identities = 64/298 (21%), Positives = 105/298 (35%), Gaps = 31/298 (10%)
Query: 202 QLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNL 261
L+ + S G VP L LDL +N ++ + F NL++L L + NN
Sbjct: 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNK 66
Query: 262 LSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSG 321
+S P + L KL YL NQ + + + N+++
Sbjct: 67 ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV------------HENEITK 114
Query: 322 PLPSWLGKWNQMESVWLNN--NQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSE 379
S NQM V L + G L YIR+++ ++ +IP+ L
Sbjct: 115 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PP 171
Query: 380 SLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNS 439
SL E++LDGN ++ NL++L S + +
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGL----SFNSISAVDNGSLANTPHLRELHLN 227
Query: 440 NFFNGSIPMRLGDSTSLNILELGNNNLNG------SIPEKIADLAQLQFLDLSYNNLS 491
N +P L D + ++ L NNN++ P A + L N +
Sbjct: 228 NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 78.5 bits (192), Expect = 2e-16
Identities = 57/337 (16%), Positives = 103/337 (30%), Gaps = 64/337 (18%)
Query: 250 QSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQI 309
+ LD+ NN ++ + +LK L L N+ + L L +
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK----LERLYL 86
Query: 310 FTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG 369
NQL LP + K Q V N + + N ++ + + K SG
Sbjct: 87 S-----KNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140
Query: 370 SIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNL 429
+ L I + ++ + + L +L L N +T + L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLP------PSLTELHLDGNKITKVDAASLKGL 194
Query: 430 RSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNN 489
++ L L+ N + L ++ L L L NN L +P +AD +Q + L NN
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 253
Query: 490 LSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSL 549
+S I + P
Sbjct: 254 IS--------------AIGSNDFC-------------------------------PPGYN 268
Query: 550 GHLSCSVKLNLSGNKLSV--LVPTSFGNLNGLTNLDL 584
+ ++L N + + P++F + + L
Sbjct: 269 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.3 bits (181), Expect = 5e-15
Identities = 47/263 (17%), Positives = 85/263 (32%), Gaps = 21/263 (7%)
Query: 333 MESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLS 392
+ L NN+ + N L + L NNK+S P L + L N L
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 393 GTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNS--NFFNGSIPMRL 450
E + L N +T L + +++L + +G
Sbjct: 93 ELPEKMPKTLQELRV------HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146
Query: 451 GDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDL 510
L+ + + + N+ +IP+ + L L L N +++ +S N+ L
Sbjct: 147 QGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVD---AASLKGLNNLAKL 200
Query: 511 SYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVP 570
S N + ++ + P +EL L +P L + L N +S +
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 259
Query: 571 TSF------GNLNGLTNLDLSYN 587
F + + L N
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSN 282
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.4 bits (176), Expect = 2e-14
Identities = 40/263 (15%), Positives = 80/263 (30%), Gaps = 21/263 (7%)
Query: 112 LRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPS 171
L+ + +L L L L N + + L +L+ L L +NQL
Sbjct: 38 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 97
Query: 172 QLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLD 231
L L + + L M + L + +G + +L +
Sbjct: 98 MPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKKLSYIR 156
Query: 232 LSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQ 291
++D ++ ++ L +L L + N ++ + L L + S
Sbjct: 157 IADTNIT-TIPQGLPPSLT---ELHLDGNKITKVDAASLKGLNNL-------AKLGLSFN 205
Query: 292 SELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIG------ 345
S + L+ + N +P L ++ V+L+NN
Sbjct: 206 SISAVDNGSLANTPHLRELHLN---NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 262
Query: 346 RIPLEVGNCSMLKYIRLSNNKLS 368
P + + L +N +
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.8 bits (159), Expect = 3e-12
Identities = 41/242 (16%), Positives = 80/242 (33%), Gaps = 29/242 (11%)
Query: 357 LKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSN 416
+ L NNK++ + + ++L + L N +S F L +LE+L LS N
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA---PLVKLERLYLSKN 89
Query: 417 MLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIAD 476
L K L+ +++ + S+ L + L +G
Sbjct: 90 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQG 148
Query: 477 LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGS 536
+ +L ++ ++ N++ IP + + L N ++ L
Sbjct: 149 MKKLSYIRIADTNIT--------------TIPQ-GLPPSLTELHLDGNKITKVDAASLKG 193
Query: 537 CVVVLT---------GYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587
+ SL + +L+L+ NKL VP + + + L N
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNN 252
Query: 588 EF 589
Sbjct: 253 NI 254
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.7 bits (151), Expect = 3e-11
Identities = 37/191 (19%), Positives = 65/191 (34%), Gaps = 7/191 (3%)
Query: 406 SQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNN 465
LDL +N +T + NL+++ L L +N + P L L L N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 466 LNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNM 525
L + L +L+ + + + + F+ +N +
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSV-------FNGLNQMIVVELGTNPLKSSGIEN 143
Query: 526 LSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLS 585
+ K+L + T G +L+L GNK++ + S LN L L LS
Sbjct: 144 GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203
Query: 586 YNEFDGNNKFC 596
+N +
Sbjct: 204 FNSISAVDNGS 214
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.4 bits (199), Expect = 1e-17
Identities = 47/286 (16%), Positives = 87/286 (30%), Gaps = 43/286 (15%)
Query: 230 LDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGS 289
L ++ V + Q + + N +S + L+ +L N
Sbjct: 16 TSCPQQGLQ-AVPVGIPAASQ---RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71
Query: 290 IQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPL 349
+ + QL P+ ++ ++ L+ P
Sbjct: 72 DAAAFTGLALL--------EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123
Query: 350 EVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLE 409
+ L+Y+ L +N L D +L + L GN +S E F L L+
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF---RGLHSLD 180
Query: 410 KLDLSSNMLTGRIPKEIGNLR------------------------SIQILKLNSNFFNGS 445
+L L N + P +L ++Q L+LN N +
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240
Query: 446 IPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491
R L ++ + S+P++ LA L+ N+L
Sbjct: 241 CRAR-PLWAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQ 282
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.4 bits (186), Expect = 8e-16
Identities = 52/277 (18%), Positives = 88/277 (31%), Gaps = 18/277 (6%)
Query: 168 SLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRL 227
++P + + + L N + + + L L N L L
Sbjct: 25 AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 228 QDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFT 287
+ LDLSDN S+ + F L L L + L P L L YL N
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 288 GSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRI 347
+ N L L + N++S + ++ + L+ N+
Sbjct: 143 ALPDDTFRDLGN----LTHLFLH-----GNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 348 PLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQ 407
P + L + L N LS L +L + L+ N +
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP----LWAW 249
Query: 408 LEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG 444
L+K SS+ + +P+ L + +L +N G
Sbjct: 250 LQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (170), Expect = 8e-14
Identities = 56/264 (21%), Positives = 92/264 (34%), Gaps = 15/264 (5%)
Query: 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFT 190
+ + L N + P+ + L +L L N L+ + L LE L L N+
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 191 GE-MPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNL 249
P+ + +L +L G P L LQ L L DN L L F +L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDL 152
Query: 250 QSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQI 309
+L++L + N +S L L L N+ +
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL--------- 203
Query: 310 FTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG 369
T N LS L ++ + LN+N ++ + L+ R S++++
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPC 262
Query: 370 SIPRELNDSESLVEINLDGNMLSG 393
S+P+ L + L N L G
Sbjct: 263 SLPQRLAGRDLK---RLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (167), Expect = 2e-13
Identities = 49/267 (18%), Positives = 89/267 (33%), Gaps = 18/267 (6%)
Query: 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFN 214
+ + L N++S + L L L SN + + L+ LD S N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 215 GTV-PIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHL 273
+V P L RL L L L LF L +L YL + +N L L
Sbjct: 94 RSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 274 KKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQM 333
L+ +L N+ + + + N+++ P ++
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDR---------LLLHQNRVAHVHPHAFRDLGRL 203
Query: 334 ESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSG 393
+++L N + L+Y+RL++N R L + + +
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPC 262
Query: 394 TIEDVFGRCTNLSQLEKLDLSSNMLTG 420
++ L+ + L++N L G
Sbjct: 263 SLPQ------RLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.3 bits (152), Expect = 2e-11
Identities = 36/159 (22%), Positives = 53/159 (33%), Gaps = 5/159 (3%)
Query: 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSF 189
L+ L L N L P +L L L L N++S L L+ L L N
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 190 TGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNL 249
P D+ +L +L N + L L LQ L L+DN
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--W 247
Query: 250 QSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTG 288
L S++ + ++P ++ L N G
Sbjct: 248 AWLQKFRGSSSEVPCSLPQRLAGRDLKR---LAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 2e-10
Identities = 57/328 (17%), Positives = 93/328 (28%), Gaps = 74/328 (22%)
Query: 265 NIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLP 324
IP + +L N+ + + C+N N L+
Sbjct: 29 GIPAASQRI------FLHGNRISHVPAASFRACRNLT---------ILWLHSNVLARIDA 73
Query: 325 SWLGKWNQMESVWLNNNQFIGRI-PLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVE 383
+ +E + L++N + + P L + L L P +L
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 384 INLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFN 443
+ L N L +D F NL+ L L N ++ + L S+ L L+ N
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHL---FLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 444 GSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFH 503
P D L L L NNL+ E +A L LQ+L L+ N
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV------------ 238
Query: 504 EVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGN 563
+ +KF S + + +P+
Sbjct: 239 -CDCRARPLWAWLQKFRGSSSEVPCSLPQ------------------------------- 266
Query: 564 KLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
L G L+ N+ G
Sbjct: 267 -----------RLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 8e-10
Identities = 37/172 (21%), Positives = 55/172 (31%), Gaps = 2/172 (1%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184
L +L L+L + L L L+ L L +N L L L L L
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVS 244
N + + L L N P +L RL L L N LS +L
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTE 219
Query: 245 LFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGN 296
L++L YL +++N + L ++ S+ L
Sbjct: 220 ALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG 270
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 5e-08
Identities = 46/255 (18%), Positives = 67/255 (26%), Gaps = 52/255 (20%)
Query: 360 IRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNM-- 417
L ++P + + I L GN +S F C NL+ L
Sbjct: 16 TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 418 --------------------LTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLN 457
L P L + L L+ P +L
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132
Query: 458 ILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYR 517
L L +N L + DL L L L N + V H+
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI------------SSVPERAFRGLHSLD 180
Query: 518 KFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLN 577
+ L N + P + L + L L N LS L + L
Sbjct: 181 RLLLHQNR---------------VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225
Query: 578 GLTNLDLSYNEFDGN 592
L L L+ N + +
Sbjct: 226 ALQYLRLNDNPWVCD 240
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 5e-05
Identities = 29/155 (18%), Positives = 45/155 (29%), Gaps = 28/155 (18%)
Query: 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGS 168
Y L+ +L+ DL L L L N + P L L L L +N+++
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 169 LPSQLGVLTW------------------------LETLSLCSNSFTGEMPSELGDMKQLK 204
P L L+ L L N + + L+
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQ 251
Query: 205 SLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSG 239
S + ++P L L+ N L G
Sbjct: 252 KFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.1 bits (189), Expect = 4e-16
Identities = 27/90 (30%), Positives = 49/90 (54%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
V +D++A+NIL+ E+ KV DFGLARLI D + I + PE + +
Sbjct: 135 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 194
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKDIV 711
+++ FG++L EL + + P +++++
Sbjct: 195 SDVWSFGILLTELTTKGRVPYPGMVNREVL 224
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (100), Expect = 9e-05
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 588 EFDGNN-KFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK 624
E + + K +G G FG V+ GT VA+K
Sbjct: 13 EIPRESLRLEVK--LGQGCFGEVWMGTWNGTTRVAIKT 48
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.9 bits (181), Expect = 5e-15
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLIS-DCKSHISTDVASAISYVPPEYGRARKAN- 679
+ +D+K++NI L+ED K+ DFGLA + S SH ++ +I ++ PE R + N
Sbjct: 126 IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNP 185
Query: 680 --ERDNIYRFGVVLLELVIRKQP 700
+ ++Y FG+VL EL+ + P
Sbjct: 186 YSFQSDVYAFGIVLYELMTGQLP 208
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.8 bits (178), Expect = 9e-15
Identities = 25/102 (24%), Positives = 50/102 (49%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D++A+NIL+++ K+ DFGLARLI D + I + PE +
Sbjct: 131 IHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIK 190
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNPIAKP 723
+++ FG++L E+V + P + +++ + +P
Sbjct: 191 SDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRP 232
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (102), Expect = 5e-05
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 588 EFDGNN-KFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK 624
E K E+ +G G FG V+ G VAVK
Sbjct: 9 EVPRETLKLVER--LGAGQFGEVWMGYYNGHTKVAVKS 44
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.9 bits (176), Expect = 2e-14
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+K +N+ L+ + K+ DFGLAR+++ + + Y+ PE NE+
Sbjct: 136 LHRDLKPANVFLDGKQNVKLGDFGLARILNH-DTSFAKAFVGTPYYMSPEQMNRMSYNEK 194
Query: 682 DNIYRFGVVLLELVIRKQP 700
+I+ G +L EL P
Sbjct: 195 SDIWSLGCLLYELCALMPP 213
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.0 bits (176), Expect = 2e-14
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+ A N L+N+ KV DFGL+R + D + S + + PPE K + +
Sbjct: 122 LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSK 181
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNPIAKP 723
+I+ FGV++ E+ + +F + + + +P
Sbjct: 182 SDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRP 223
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (97), Expect = 2e-04
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 601 IGGGGFGTVFKGTMPDGKTVAVKK 624
+G G FG V G VA+K
Sbjct: 12 LGTGQFGVVKYGKWRGQYDVAIKM 35
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.7 bits (174), Expect = 3e-14
Identities = 38/279 (13%), Positives = 91/279 (32%), Gaps = 33/279 (11%)
Query: 181 TLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGS 240
TL L + ++ L + + + + + + R+Q +DLS++++ S
Sbjct: 4 TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVS 61
Query: 241 LTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLS--DHYLGINQFTGSIQSELGNCK 298
+ + L L + LS I ++ L + ++Q+ L +C
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 299 NFKSV-------------LAELQIFTFSAGMNQLSGPLPSWLGKWNQ---------MESV 336
+ + + + LSG + +
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181
Query: 337 WLNNNQFIGRIPLEVGNCSMLKYIRLSN-NKLSGSIPRELNDSESLVEINLDGNMLSGTI 395
++ E + L+++ LS + EL + +L + + G + GT+
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241
Query: 396 EDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQI 434
+ + + L ++ + T IGN ++ +I
Sbjct: 242 QLLKEALPH------LQINCSHFTTIARPTIGNKKNQEI 274
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (148), Expect = 6e-11
Identities = 43/294 (14%), Positives = 90/294 (30%), Gaps = 30/294 (10%)
Query: 204 KSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263
++LD +G + V RL + + + L + + ++D+SN+++
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIE 59
Query: 264 GNIPPEI-SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGP 322
+ I S KL + L + + I + L N + + L
Sbjct: 60 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119
Query: 323 LPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLV 382
L + N + + L N + + +LV
Sbjct: 120 CSR-LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178
Query: 383 EINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFF 442
++L +++ D F L+ L+ L LS
Sbjct: 179 HLDLSDSVMLK--NDCFQEFFQLNYLQHLSLS-----------------------RCYDI 213
Query: 443 NGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILS 496
+ LG+ +L L++ +G++ L LQ + ++RP +
Sbjct: 214 IPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIG 267
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 4e-05
Identities = 50/281 (17%), Positives = 91/281 (32%), Gaps = 23/281 (8%)
Query: 85 LSRRLGLAIANALKDLEELLLRVVYQVLR-TQSLKGPVSPLLFDLSKLRVLNLSQNLLFG 143
L + L L N D+ LL R +S F +++ ++LS +++
Sbjct: 1 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60
Query: 144 QPSPQV-SNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL--CSNSFTGEMPSELGDM 200
+ S +L+ LSL +LS + + L + L L+L CS + + L
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 201 KQLKSLDF------SGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSY 254
+L L+ + V +T+L NL L+ + +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180
Query: 255 LDVSNNLLSGNIPPEISHLKKLSDHYL-GINQFTGSIQSELGNCKNFKSVLAELQIFTFS 313
+ +L + E L L L ELG K++ ++
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL--QVFGIVPD 238
Query: 314 AGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNC 354
+ L LP + +N + F +GN
Sbjct: 239 GTLQLLKEALP----------HLQINCSHFTTIARPTIGNK 269
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 13/105 (12%)
Query: 433 QILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSR 492
Q L L + + RL S + + ++ + E + ++Q +DLS + +
Sbjct: 3 QTLDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEV 60
Query: 493 PILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSC 537
L LS + L LS PI L
Sbjct: 61 STLHGI-----------LSQCSKLQNLSLEGLRLSDPIVNTLAKN 94
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.3 bits (174), Expect = 3e-14
Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 23/130 (17%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+ A N L+ E+ KV DFG+ R + D + ST + + PE + + +
Sbjct: 123 IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSK 182
Query: 682 DNIYRFGVVLLELVIRKQP---------------TGPKFED--------KDIVVGCVSDN 718
+++ FGV++ E+ + TG + I+ C +
Sbjct: 183 SDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKER 242
Query: 719 PIAKPGMLRV 728
P +P R+
Sbjct: 243 PEDRPAFSRL 252
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (100), Expect = 8e-05
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 601 IGGGGFGTVFKGTMPDGKTVAVKK 624
IG G FG V G + VA+K
Sbjct: 13 IGSGQFGLVHLGYWLNKDKVAIKT 36
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.6 bits (175), Expect = 4e-14
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+K SNIL+N + K+ DFG++ + D ++ SY+ PE + + + +I
Sbjct: 130 DVKPSNILVNSRGEIKLCDFGVSGQLID---SMANSFVGTRSYMSPERLQGTHYSVQSDI 186
Query: 685 YRFGVVLLELVIRKQP 700
+ G+ L+E+ + + P
Sbjct: 187 WSMGLSLVEMAVGRYP 202
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (88), Expect = 0.002
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 592 NNKFCEKNGIGGGGFGTVFKGT-MPDGKTVAVKK 624
++ F + + +G G G VFK + P G +A K
Sbjct: 5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKL 38
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.9 bits (170), Expect = 1e-13
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAIS--YVPPEYGRARKANERD 682
D+ A NIL+N + KV DFGL+R++ D T I + PE RK
Sbjct: 135 DLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSAS 194
Query: 683 NIYRFGVVLLELVIRKQPTGPKFEDKDIV 711
+++ FG+V+ E++ + + + +++
Sbjct: 195 DVWSFGIVMWEVMTYGERPYWELSNHEVM 223
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (171), Expect = 1e-13
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKS---HISTDVASAISYVPPEYGRARKA 678
V +D+ A N +L+E F KV DFGLAR + D + H T + ++ E + +K
Sbjct: 152 VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKF 211
Query: 679 NERDNIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNPIAKP 723
+ +++ FGV+L EL+ R P P DI V + + +P
Sbjct: 212 TTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQP 256
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.4 bits (169), Expect = 2e-13
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 23/127 (18%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+ A N L+ E+ KV DFGL+RL++ I + PE K + + ++
Sbjct: 140 DLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDV 199
Query: 685 YRFGVVLLELVIRKQPTGPKFED-----------------------KDIVVGCVSDNPIA 721
+ FGV+L E+ P + +++ C NP
Sbjct: 200 WAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSD 259
Query: 722 KPGMLRV 728
+P +
Sbjct: 260 RPSFAEI 266
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.3 bits (91), Expect = 0.001
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 588 EFDGNNKFCEKNGIGGGGFGTVFKGTMPD-GKTVAVKK 624
E + K+ +GGG +G V++G TVAVK
Sbjct: 13 EME-RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKT 49
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (167), Expect = 3e-13
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLI---SDCKSHISTDVASAISYVPPEY------ 672
+D+K+ NIL+ ++ + D GLA +D Y+ PE
Sbjct: 130 AHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSIN 189
Query: 673 GRARKANERDNIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNP 719
+ ++ +R +IY G+V E+ R G + + V +P
Sbjct: 190 MKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP 236
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 0.003
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 601 IGGGGFGTVFKGTMPDGKTVAVKK 624
IG G FG V++G G+ VAVK
Sbjct: 11 IGKGRFGEVWRGKW-RGEEVAVKI 33
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 68.3 bits (166), Expect = 4e-13
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLI-SDCKSHISTDVASAISYVPPEYGRARKANE 680
V +D+ N L+ E+ K+ DFGL+R I S + A I ++PPE +
Sbjct: 162 VHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTT 221
Query: 681 RDNIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNPIAKP 723
+++ +GVVL E+ ++++ N +A P
Sbjct: 222 ESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACP 264
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.3 bits (88), Expect = 0.002
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 581 NLDLSYNEFDGNN-KFCEKNGIGGGGFGTVFKGTMP------DGKTVAVKKDIKASNILL 633
N L E+ NN ++ IG G FG VF+ P VAVK + ++ +
Sbjct: 2 NPKLLSLEYPRNNIEYVRD--IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADM 59
Query: 634 NEDF 637
DF
Sbjct: 60 QADF 63
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (167), Expect = 5e-13
Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 24/128 (18%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLI-SDCKSHISTDVASAISYVPPEYGRARKANE 680
V +D+ A N+L+ K+ DFGLA+L+ ++ K + + I ++ E R
Sbjct: 133 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 192
Query: 681 RDNIYRFGVVLLELV------------------IRKQPTGPKFED-----KDIVVGCVSD 717
+ +++ +GV + EL+ + K P+ I+V C
Sbjct: 193 QSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMI 252
Query: 718 NPIAKPGM 725
+ ++P
Sbjct: 253 DADSRPKF 260
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.9 bits (165), Expect = 7e-13
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI----STDVASAISYVPPEYGRARK 677
V +D+ A NIL+N + KV DFGL+R + D S + I + PE + RK
Sbjct: 150 VHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRK 209
Query: 678 ANERDNIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNPIAKP 723
+++ +G+V+ E++ + ++D++ D + P
Sbjct: 210 FTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPP 255
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.1 bits (161), Expect = 2e-12
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 24/122 (19%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
DIK N+LL + K+ DFG + + + + Y+PPE R +E+ ++
Sbjct: 131 DIKPENLLLGSAGELKIADFGWSVHAPSSRRT---TLCGTLDYLPPEMIEGRMHDEKVDL 187
Query: 685 YRFGVVLLELVIRKQP---------------TGPKFED------KDIVVGCVSDNPIAKP 723
+ GV+ E ++ K P F D +D++ + NP +P
Sbjct: 188 WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRP 247
Query: 724 GM 725
+
Sbjct: 248 ML 249
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.2 bits (161), Expect = 2e-12
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 29/129 (22%)
Query: 622 VKKDIKASNILLN-EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANE 680
+ +D+K NI + K+ D GLA L ++ + V ++ PE K +E
Sbjct: 136 IHRDLKCDNIFITGPTGSVKIGDLGLATLK---RASFAKAVIGTPEFMAPEMYE-EKYDE 191
Query: 681 RDNIYRFGVVLLELVIRKQP---------------TGPKFED---------KDIVVGCVS 716
++Y FG+ +LE+ + P +G K K+I+ GC+
Sbjct: 192 SVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIR 251
Query: 717 DNPIAKPGM 725
N + +
Sbjct: 252 QNKDERYSI 260
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.6 bits (157), Expect = 6e-12
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEY-----GRARKAN 679
D+KA NIL D D K+ DFG++ + + + + ++ PE + R +
Sbjct: 135 DLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGT-PYWMAPEVVMCETSKDRPYD 193
Query: 680 ERDNIYRFGVVLLELVIRKQP 700
+ +++ G+ L+E+ + P
Sbjct: 194 YKADVWSLGITLIEMAEIEPP 214
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.3 bits (156), Expect = 9e-12
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLIS-DCKSHISTDVASAISYVPPEYGRARKANE 680
+ +D+K NILLNED ++ DFG A+++S + K + YV PE + A +
Sbjct: 130 IHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACK 189
Query: 681 RDNIYRFGVVLLELVIRKQP 700
+++ G ++ +LV P
Sbjct: 190 SSDLWALGCIIYQLVAGLPP 209
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.2 bits (156), Expect = 9e-12
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +DIK+ NILL D K+ DFG I+ +S ST V + ++ PE + +
Sbjct: 138 IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGT-PYWMAPEVVTRKAYGPK 196
Query: 682 DNIYRFGVVLLELVIRKQP 700
+I+ G++ +E++ + P
Sbjct: 197 VDIWSLGIMAIEMIEGEPP 215
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (89), Expect = 0.002
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 590 DGNNKFCEKNGIGGGGFGTVFKGT-MPDGKTVAVKKDIKASNILLNEDF 637
D K+ IG G GTV+ + G+ VA+++ + E
Sbjct: 17 DPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQ-MNLQQQPKKELI 64
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.9 bits (155), Expect = 1e-11
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
V +D+ A N+L++ED AKV DFGL + S + V + PE R +K + +
Sbjct: 125 VHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVK----WTAPEALREKKFSTK 180
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNPIAKP 723
+++ FG++L E+ + P+ KD+V + P
Sbjct: 181 SDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAP 222
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.2 bits (152), Expect = 1e-11
Identities = 41/205 (20%), Positives = 59/205 (28%), Gaps = 16/205 (7%)
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVS 244
C +P +L K L S N L TRL L+L L+
Sbjct: 17 CDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 245 LFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVL 304
L +L ++P L L+ + N+ T L
Sbjct: 75 TLPVLGTLDLSHNQLQ----SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL---- 126
Query: 305 AELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSN 364
N+L P L ++E + L NN + L + L
Sbjct: 127 -----QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 365 NKLSGSIPRELNDSESLVEINLDGN 389
N L +IP+ S L L GN
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.6 bits (140), Expect = 6e-10
Identities = 36/217 (16%), Positives = 56/217 (25%), Gaps = 13/217 (5%)
Query: 374 ELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQ 433
E++ S +E+N D L+ D+ L LS N+L + +
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLT 58
Query: 434 ILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRP 493
L L+ L + + + L L +L
Sbjct: 59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 494 ILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLS 553
L N K + P ++L LT L L
Sbjct: 119 ALRGLGELQELY------LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172
Query: 554 CSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFD 590
L L N L + P F + L L N +
Sbjct: 173 NLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 3e-05
Identities = 47/251 (18%), Positives = 70/251 (27%), Gaps = 43/251 (17%)
Query: 153 KRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNG 212
K +L L EN L + L T L L+L T L L
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-----DGTLPVLGTLDLS 85
Query: 213 FNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISH 272
N + L L +L+ LDVS N L+ +
Sbjct: 86 HNQLQSLP-----------------------LLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 273 LKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQ 332
L +L + YL N+ L S N L+ L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKL---------EKLSLANNNLTELPAGLLNGLEN 173
Query: 333 MESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGS-----IPRELNDSESLVEINLD 387
++++ L N IP +L + L N + R L D+ V +
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQ 232
Query: 388 GNMLSGTIEDV 398
G + +V
Sbjct: 233 GVDVKAMTSNV 243
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 38/269 (14%), Positives = 69/269 (25%), Gaps = 68/269 (25%)
Query: 222 GELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYL 281
++ +++ L+ +L L + L +S NLL + +L+ L
Sbjct: 7 SKVASHLEVNCDKRNLT-ALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 282 GINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNN 341
+ L L S Q L + + ++ N
Sbjct: 63 DRAEL---------TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFN 110
Query: 342 QFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGR 401
+ + L+ + L N+L P L + L +++L N L+ +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN- 169
Query: 402 CTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILEL 461
L L+ L L N L
Sbjct: 170 --GLENLDTLLLQENSLY------------------------------------------ 185
Query: 462 GNNNLNGSIPEKIADLAQLQFLDLSYNNL 490
+IP+ L F L N
Sbjct: 186 -------TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 0.002
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 545 IPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGNNKFC 596
+P L + L+LS N L + LT L+L E
Sbjct: 25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 63.9 bits (155), Expect = 1e-11
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEY---GRARKA 678
+ +D+KA NILL+E K+ DFG A +++ S + T ++ PE +
Sbjct: 137 IHRDVKAGNILLSEPGLVKLGDFGSASIMAPANSFVGT-----PYWMAPEVILAMDEGQY 191
Query: 679 NERDNIYRFGVVLLELVIRKQP 700
+ + +++ G+ +EL RK P
Sbjct: 192 DGKVDVWSLGITCIELAERKPP 213
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.8 bits (90), Expect = 0.001
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 590 DGNNKFCEKNGIGGGGFGTVFKGT-MPDGKTVAVKKDIKASNILLNEDFD 638
D F + IG G FG V+ + + + VA+KK + S NE +
Sbjct: 12 DPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKK-MSYSGKQSNEKWQ 60
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (152), Expect = 2e-11
Identities = 23/102 (22%), Positives = 50/102 (49%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
V +DI A N+L++ + K+ DFGL+R + D + ++ I ++ PE R+
Sbjct: 130 VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSA 189
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNPIAKP 723
+++ FGV + E+++ ++ D++ + + P
Sbjct: 190 SDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMP 231
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.4 bits (151), Expect = 3e-11
Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 25/129 (19%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTD--VASAISYVPPEYGRARKAN 679
V +D+ A N+LL AK+ DFGL++ + +++ + + PE K +
Sbjct: 129 VHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFS 188
Query: 680 ERDNIYRFGVVLLELVIRKQP---------------TGPKFED--------KDIVVGCVS 716
+ +++ FGV++ E Q G + D++ C +
Sbjct: 189 SKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWT 248
Query: 717 DNPIAKPGM 725
+ +PG
Sbjct: 249 YDVENRPGF 257
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.002
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 597 EKNGIGGGGFGTVFKGTMPD---GKTVAVKK 624
E +G G FGTV KG KTVAVK
Sbjct: 11 EDKELGSGNFGTVKKGYYQMKKVVKTVAVKI 41
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 61.2 bits (147), Expect = 4e-11
Identities = 30/220 (13%), Positives = 65/220 (29%), Gaps = 17/220 (7%)
Query: 200 MKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSN 259
+ + + TV +L + L ++ T+ L +L L++ +
Sbjct: 18 LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72
Query: 260 NLL-----SGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSA 314
N + N+ + L + + L +
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 315 GMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRE 374
+ + + +L+ + N S L ++ +NK+S P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 375 LNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLS 414
L +L+E++L N +S N S L + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 33/226 (14%), Positives = 73/226 (32%), Gaps = 28/226 (12%)
Query: 362 LSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGR 421
+ ++ ++ D + + ++ G ++ TIE V L+ L L+L N +T
Sbjct: 26 AGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGV----QYLNNLIGLELKDNQITDL 78
Query: 422 IPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQ 481
P + + L N +I T + + + L
Sbjct: 79 APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138
Query: 482 FLDLSYNNLSRPILSKHSSYFHE--VNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVV 539
+ + L+ ++ S + ++ L+ N +S P
Sbjct: 139 NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-------- 190
Query: 540 VLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLS 585
L L ++++L N++S + P N + L + L+
Sbjct: 191 ---------LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 43.5 bits (101), Expect = 4e-05
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 193 MPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSL 252
+ L ++ +L +L N + P L L L ++ L +N +S VS N +L
Sbjct: 165 DLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD---VSPLANTSNL 219
Query: 253 SYLDVSN 259
+ ++N
Sbjct: 220 FIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.002
Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 18/209 (8%)
Query: 394 TIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDS 453
I +F L+ K+ + +T + + +L I L +I +
Sbjct: 8 AINVIFPD-PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIE-GVQYL 62
Query: 454 TSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYS 513
+L LEL +N + P K L + I S ++ ++
Sbjct: 63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122
Query: 514 HNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNL-----------SG 562
+ S + LT S+G+ S L
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182
Query: 563 NKLSVLVPTSFGNLNGLTNLDLSYNEFDG 591
NK+S + P +L L + L N+
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISD 209
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (150), Expect = 6e-11
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLI-SDCKSHISTDVASAISYVPPEYGRARKANERDN 683
D+ A N+L+ K+ DFGLAR I SD + + + ++ PE + +
Sbjct: 189 DLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSD 248
Query: 684 IYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNP 719
++ +G++L E+ P + +
Sbjct: 249 VWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGF 284
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (146), Expect = 1e-10
Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 26/133 (19%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRARKAN 679
+ +D+ A N+LL K+ DFGL R + H + ++ PE + R +
Sbjct: 133 IHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFS 192
Query: 680 ERDNIYRFGVVLLELVIRKQP----------------TGPKFED--------KDIVVGCV 715
+ + FGV L E+ Q G + +++V C
Sbjct: 193 HASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCW 252
Query: 716 SDNPIAKPGMLRV 728
+ P +P + +
Sbjct: 253 AHKPEDRPTFVAL 265
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.3 bits (148), Expect = 1e-10
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+K NILL+++ K+ DFG A+ + D + Y+ PE + N+ +
Sbjct: 129 DLKPENILLDKNGHIKITDFGFAKYVPDVT----YTLCGTPDYIAPEVVSTKPYNKSIDW 184
Query: 685 YRFGVVLLELVIRKQP 700
+ FG+++ E++ P
Sbjct: 185 WSFGILIYEMLAGYTP 200
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (145), Expect = 2e-10
Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 25/130 (19%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+ A NIL+ E++ AK+ DFGL+R T + ++ E
Sbjct: 149 IHRDLAARNILVGENYVAKIADFGLSRGQEVYVKK--TMGRLPVRWMAIESLNYSVYTTN 206
Query: 682 DNIYRFGVVLLEL---------------VIRKQPTGPKFED--------KDIVVGCVSDN 718
+++ +GV+L E+ + K P G + E D++ C +
Sbjct: 207 SDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREK 266
Query: 719 PIAKPGMLRV 728
P +P ++
Sbjct: 267 PYERPSFAQI 276
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (141), Expect = 6e-10
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANE 680
+ +D+ A NILL+E K+ DFGLAR I ++ D + ++ PE R
Sbjct: 156 IHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTI 215
Query: 681 RDNIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNP 719
+ +++ FGV+L E+ P + + + +
Sbjct: 216 QSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT 254
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (140), Expect = 7e-10
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLI-SDCKSHISTDVASAISYVPPEYGRARK-AN 679
+DIK N+LL+E + K+ DFGLA + + + + + + YV PE + R+
Sbjct: 125 THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHA 184
Query: 680 ERDNIYRFGVVLLELVIRK 698
E +++ G+VL ++ +
Sbjct: 185 EPVDVWSCGIVLTAMLAGE 203
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.2 bits (140), Expect = 9e-10
Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 25/129 (19%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASA--ISYVPPEYGRARKANERD 682
D+ A N+LL AK+ DFGL++ + S+ + A + + PE RK + R
Sbjct: 134 DLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRS 193
Query: 683 NIYRFGVVLLELVIRKQP---------------TGPKFED--------KDIVVGCVSDNP 719
+++ +GV + E + Q G + E ++ C
Sbjct: 194 DVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKW 253
Query: 720 IAKPGMLRV 728
+P L V
Sbjct: 254 EDRPDFLTV 262
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.0 bits (139), Expect = 1e-09
Identities = 21/87 (24%), Positives = 39/87 (44%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+K N+L+N + + K+ +FGLAR S +V + P A+ + ++
Sbjct: 126 DLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDM 185
Query: 685 YRFGVVLLELVIRKQPTGPKFEDKDIV 711
+ G + EL +P P + D +
Sbjct: 186 WSAGCIFAELANAGRPLFPGNDVDDQL 212
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.6 bits (138), Expect = 2e-09
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+K N+L+N + K+ DFGLAR + +V + P + +
Sbjct: 124 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTA 183
Query: 682 DNIYRFGVVLLELVIRKQP 700
+I+ G + E+V R+
Sbjct: 184 VDIWSLGCIFAEMVTRRAL 202
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.6 bits (138), Expect = 2e-09
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDN 683
+D+K +N+LL+E+ K+ DFGLA+ + V + P AR +
Sbjct: 124 RDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVD 183
Query: 684 IYRFGVVLLELVIRKQP 700
++ G +L EL++R
Sbjct: 184 MWAVGCILAELLLRVPF 200
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 0.004
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 601 IGGGGFGTVFKGT-MPDGKTVAVKKDIKASNILLNEDFDAKVL 642
+G G F TV+K + VA+KK + + L
Sbjct: 6 LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTAL 48
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Score = 57.4 bits (138), Expect = 2e-09
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 622 VKKDIKASNILLNEDFD--AKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKAN 679
V D+K NI+ K++DFGL + +S T + PE +
Sbjct: 146 VHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVT--TGTAEFAAPEVAEGKPVG 203
Query: 680 ERDNIYRFGVVLLELVIRKQP 700
+++ GV+ L+ P
Sbjct: 204 YYTDMWSVGVLSYILLSGLSP 224
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (137), Expect = 2e-09
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
V +D+K NILL++D K+ DFG+ + + +T + Y+ PE +K N
Sbjct: 125 VYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGT-PDYIAPEILLGQKYNHS 183
Query: 682 DNIYRFGVVLLELVIRKQP 700
+ + FGV+L E++I + P
Sbjct: 184 VDWWSFGVLLYEMLIGQSP 202
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 0.004
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 601 IGGGGFGTVFKGT-MPDGKTVAVKKDIKASNILLNEDFDAKVLDFGLARLISDCKSH 656
+G G FG VF + A+K +K +L+++D + +++ R++S H
Sbjct: 10 LGKGSFGKVFLAEFKKTNQFFAIKA-LKKDVVLMDDDVECTMVE---KRVLSLAWEH 62
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (136), Expect = 3e-09
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANE 680
V +D+ A N ++ EDF K+ DFG+ R I + + ++ PE +
Sbjct: 155 VHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTT 214
Query: 681 RDNIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNPIAKP 723
+++ FGVVL E+ + ++ ++ + + KP
Sbjct: 215 YSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKP 257
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (136), Expect = 3e-09
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLI-SDCKSHISTDVASAISYVPPEYGRARKANERDN 683
D+ A NILL K+ DFGLAR I +D + + + ++ PE +
Sbjct: 170 DLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESD 229
Query: 684 IYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNP 719
++ +G+ L EL P + +
Sbjct: 230 VWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGF 265
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 0.001
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 584 LSYN---EFDGNN-KFCEKNGIGGGGFGTVFKGTM------PDGKTVAVKKDIKASNILL 633
L Y+ EF N F + +G G FG V + T TVAVK ++++
Sbjct: 12 LPYDHKWEFPRNRLSFGKT--LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTE 69
Query: 634 NEDFDAKVLDFGLARLISDCKSH 656
E +++ +++S +H
Sbjct: 70 REALMSEL------KVLSYLGNH 86
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.0 bits (124), Expect = 8e-09
Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Query: 156 KMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNG 215
++L L L+ L L + L L N P+ L ++ L+ L S N
Sbjct: 1 RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57
Query: 216 TVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKK 275
+ L RLQ+L L +N L S + + L L++ N L L +
Sbjct: 58 VDGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAE 114
Query: 276 L 276
+
Sbjct: 115 M 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.5 bits (107), Expect = 2e-06
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 404 NLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGN 463
L + LDLS N L P + LR +++L+ + N + + L L L N
Sbjct: 18 QLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVA--NLPRLQELLLCN 74
Query: 464 NNLNG-SIPEKIADLAQLQFLDLSYNNLSR 492
N L + + + +L L+L N+L +
Sbjct: 75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.0 bits (98), Expect = 2e-05
Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 25/118 (21%)
Query: 458 ILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHS---------SYFHEVNIP 508
+L L + +L ++ + L + LDLS+N L + + S N+
Sbjct: 2 VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 509 DLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLS 566
++ ++ L N L + L V LNL GN L
Sbjct: 60 GVANLPRLQELLLCNNRLQQSAA--------------IQPLVSCPRLVLLNLQGNSLC 103
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.9 bits (95), Expect = 8e-05
Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 21/116 (18%)
Query: 481 QFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIP------KEL 534
+ L L++ +L+ + L DLS+N L P
Sbjct: 1 RVLHLAHKDLT--------------VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLE 46
Query: 535 GSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVL-VPTSFGNLNGLTNLDLSYNEF 589
+ +L +L L N+L + L L+L N
Sbjct: 47 VLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.7 bits (92), Expect = 2e-04
Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 15/117 (12%)
Query: 254 YLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFS 313
L +++ L+ + + L ++ L N+ + L + + + A
Sbjct: 2 VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV 58
Query: 314 AGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLE-VGNCSMLKYIRLSNNKLSG 369
G+ +++ + L NN+ ++ + +C L + L N L
Sbjct: 59 DGVAN-----------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.6 bits (84), Expect = 0.002
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Query: 123 PLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETL 182
L L + L+LS N L P P ++ L+ L++L +N L L L+ L
Sbjct: 14 CHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVDGVA--NLPRLQEL 70
Query: 183 SLCSNSFTG-EMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDL 230
LC+N L +L L+ GN I+ L +
Sbjct: 71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (132), Expect = 1e-08
Identities = 54/452 (11%), Positives = 111/452 (24%), Gaps = 30/452 (6%)
Query: 155 LKMLSLGENQLSGS-LPSQLGVLTWLETLSLCSNSFTGEMPSELGDM----KQLKSLDFS 209
++ L + +LS + L +L + + L T ++ L L+
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 210 GNGFNGTVPIRLGEL-----TRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG 264
N + + ++Q L L + L+G+ L + L++L L +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL---S 120
Query: 265 NIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLP 324
+ + L+ L + L +Q E + +
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180
Query: 325 SWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEI 384
+ ++ + + LE + R ++ S
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTS-DNCRDLCGIVASKASLRELALGSNKLG 239
Query: 385 NLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG 444
++ L + R L E + L N G
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299
Query: 445 SIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHE 504
+ + LE + + + + L + E
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359
Query: 505 VNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNK 564
+ R L+ +S L + +L +L+LS N
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-----------TLLANHSLRELDLSNNC 408
Query: 565 LS-----VLVPTSFGNLNGLTNLDLSYNEFDG 591
L LV + L L L +
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (126), Expect = 6e-08
Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 17/114 (14%)
Query: 392 SGTIEDVFGRCTNLSQLEKLDLSSNMLTGR----IPKEIGNLRSIQILKLNSNFFNGSIP 447
+G E G S L L L+ ++ + + S++ L L++N +
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414
Query: 448 MRLGDS-----TSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILS 496
++L +S L L L + + + +++ L + +L ++S
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK------DKPSLR--VIS 460
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (123), Expect = 1e-07
Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 10/120 (8%)
Query: 326 WLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG----SIPRELNDSESL 381
Q+ + L + S+L+ + L++ +S S+ L + SL
Sbjct: 340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 399
Query: 382 VEINLDGNMLSGTIEDVFGRC--TNLSQLEKLDLSSNMLTGRIPKEIGNLR----SIQIL 435
E++L N L LE+L L + + + L S++++
Sbjct: 400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (121), Expect = 2e-07
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGE----LTRLQDLDLSDNLLSGS 240
L+ L + + + L L++LDLS+N L +
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412
Query: 241 ----LTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKK 275
L S+ L L + + S + + L+K
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (112), Expect = 2e-06
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 150 SNLKRLKMLSLGENQLSG----SLPSQLGVLTWLETLSLCSNSFTGEMPSELGD-----M 200
L++L L + +S SL + L L L L +N +L +
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425
Query: 201 KQLKSLDFSGNGFNGTVPIRLGEL 224
L+ L ++ + RL L
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (111), Expect = 3e-06
Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 10/94 (10%)
Query: 131 LRVLNLSQNLLFGQPSPQV-SNLKRLKMLSLGENQLSG----SLPSQLGVLTWLETLSLC 185
++ L++ L ++ L++ +++ L + L+ + S L V L L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 186 SNSFTGEMPSELGDM-----KQLKSLDFSGNGFN 214
SN + +++ L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 8e-05
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 129 SKLRVLNLSQNLLFGQP----SPQVSNLKRLKMLSLGENQLSGSLPSQLG-----VLTWL 179
S LRVL L+ + + + L+ L L N L + QL L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 180 ETLSLCSNSFTGEMPSELGDMKQLK 204
E L L ++ EM L +++ K
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 6e-04
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 17/115 (14%)
Query: 208 FSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSL---FTNLQSLSYLDVSNNLLSG 264
G + L+ L L+D +S S SL SL LD+SNN L
Sbjct: 352 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411
Query: 265 NIPPEI--------SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFT 311
++ L++L L ++ ++ L + + L++ +
Sbjct: 412 AGILQLVESVRQPGCLLEQL---VLYDIYWSEEMEDRL---QALEKDKPSLRVIS 460
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 7e-04
Identities = 18/122 (14%), Positives = 31/122 (25%), Gaps = 27/122 (22%)
Query: 480 LQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVV 539
+Q LD+ LS ++ + L L+ K++ S
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQ-----------QCQVVRLDDCGLTEARCKDISS--- 49
Query: 540 VLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFG-----NLNGLTNLDLSYNEFDGNNK 594
+L +LNL N+L + + L L G
Sbjct: 50 --------ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101
Query: 595 FC 596
Sbjct: 102 GV 103
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 0.001
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 18/83 (21%)
Query: 513 SHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLS----VL 568
S + + D+ LS EL + + L L+
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQ--------------VVRLDDCGLTEARCKD 46
Query: 569 VPTSFGNLNGLTNLDLSYNEFDG 591
+ ++ L L+L NE
Sbjct: 47 ISSALRVNPALAELNLRSNELGD 69
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 54.1 bits (128), Expect = 3e-08
Identities = 55/330 (16%), Positives = 95/330 (28%), Gaps = 16/330 (4%)
Query: 153 KRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNG 212
++ L L LS SLP + LE+L NS T E+P +K L + +
Sbjct: 38 RQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92
Query: 213 FNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISH 272
+ P+ L+ L + S + + SL L L
Sbjct: 93 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152
Query: 273 LKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQ 332
+ L + + L + L + LP +
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212
Query: 333 MESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLS 392
+ + L V + + L + + + S + NL S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272
Query: 393 GTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGD 452
C LE+L++S+N L +P L L + N +P
Sbjct: 273 SNEIRSL--CDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQ- 324
Query: 453 STSLNILELGNNNLNGSIPEKIADLAQLQF 482
+L L + N L P+ + L+
Sbjct: 325 --NLKQLHVEYNPLR-EFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 51.0 bits (120), Expect = 3e-07
Identities = 46/355 (12%), Positives = 84/355 (23%), Gaps = 48/355 (13%)
Query: 227 LQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQF 286
+L+L++ LS SL L L S N L+ +P LK + N
Sbjct: 40 AHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKS---LLVDNNNL 90
Query: 287 TGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGR 346
S ++ + + K L
Sbjct: 91 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150
Query: 347 IPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLS 406
E+ L ++ + + + + T +
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210
Query: 407 QLEKLDLSSNMLTGRIPKEIGNLRSIQ--ILKLNSNFFNGSIPMRLGDSTSLNILELGNN 464
L + L + + S F + L N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270
Query: 465 NLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYN 524
+ I L+ L++S N L +P L + S+N
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI--------------ELPAL--PPRLERLIASFN 314
Query: 525 MLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVL--VPTSFGNLN 577
L+ +P +L +L++ N L +P S +L
Sbjct: 315 HLAE----------------VPELPQNLK---QLHVEYNPLREFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 51.0 bits (120), Expect = 3e-07
Identities = 53/338 (15%), Positives = 99/338 (29%), Gaps = 32/338 (9%)
Query: 201 KQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNN 260
+Q L+ + G + ++P L+ L S N L+ L QSL L V NN
Sbjct: 38 RQAHELELNNLGLS-SLP---ELPPHLESLVASCNSLT-----ELPELPQSLKSLLVDNN 88
Query: 261 LLSG--NIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQ 318
L ++PP + +L ++ + + S ++ + N +
Sbjct: 89 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148
Query: 319 LSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDS 378
+ + + +N + ++P + + +L +
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208
Query: 379 ESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLN 438
L + N S L +
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268
Query: 439 SNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKH 498
N + I SL L + NN L +P A +L+ L S+N+L+
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLA------- 317
Query: 499 SSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGS 536
+P+L N ++ + YN L P S
Sbjct: 318 -------EVPEL--PQNLKQLHVEYNPLRE-FPDIPES 345
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 50.2 bits (118), Expect = 5e-07
Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 15/110 (13%)
Query: 330 WNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGN 389
+++ N I L+ + +SNNKL +P L + N
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFN 314
Query: 390 MLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNS 439
L+ + + L++L + N L P ++ L++NS
Sbjct: 315 HLA-EVPE------LPQNLKQLHVEYNPLRE-FPDIPESVED---LRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 48.7 bits (114), Expect = 1e-06
Identities = 45/331 (13%), Positives = 81/331 (24%), Gaps = 18/331 (5%)
Query: 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNS 188
+ L L+ L P L+ L N L+ LP L L + +
Sbjct: 38 RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92
Query: 189 FTGEMPS-ELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFT 247
+ P E + + + + I + L+ L L +
Sbjct: 93 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152
Query: 248 NLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAEL 307
+ + + + F + +
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212
Query: 308 QIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKL 367
+ S + + + F+ S L N
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272
Query: 368 SGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIG 427
S I + SL E+N+ N L + +LE+L S N L +P+
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPA------LPPRLERLIASFNHLA-EVPELPQ 324
Query: 428 NLRSIQILKLNSNFFNGSIPMRLGDSTSLNI 458
NL+ L + N P L +
Sbjct: 325 NLKQ---LHVEYNPLR-EFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.7 bits (101), Expect = 5e-05
Identities = 44/339 (12%), Positives = 87/339 (25%), Gaps = 41/339 (12%)
Query: 251 SLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIF 310
L+++N LS ++P HL+ L N T + + K+ + +
Sbjct: 39 QAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLL--VDNNNLK 91
Query: 311 TFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGS 370
S L S N +I N + + +
Sbjct: 92 ALSDLPPLLEYLGVSNNQLEKL----PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147
Query: 371 IPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLR 430
+L + L + + + LS + ++ + + + L
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207
Query: 431 SIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNL 490
N + SL L + +N L + ++
Sbjct: 208 -------TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 260
Query: 491 SRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLG 550
P + + + + ++S N L +P
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI----------------ELPALPP 304
Query: 551 HLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEF 589
L +L S N L+ + P NL L + YN
Sbjct: 305 RLE---RLIASFNHLAEV-PELPQNL---KQLHVEYNPL 336
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 126 FDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLC 185
L LN+S N L P + RL+ L N L+ +P L+ L +
Sbjct: 281 DLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLA-EVPELPQ---NLKQLHVE 332
Query: 186 SNSFTGEMPSELGDMKQLK 204
N E P ++ L+
Sbjct: 333 YNPLR-EFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.9 bits (86), Expect = 0.003
Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 21/95 (22%)
Query: 246 FTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLA 305
SL L+VSNN L +P L++L N + N K
Sbjct: 280 CDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPELPQNLK------- 327
Query: 306 ELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNN 340
N L P +E + +N+
Sbjct: 328 -----QLHVEYNPLRE-FPDIPES---VEDLRMNS 353
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 3e-08
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+K NIL+ K+ DFGLAR+ S + T V + Y PE ++
Sbjct: 141 DLKPQNILVTSSGQIKLADFGLARIYSFQMAL--TSVVVTLWYRAPEVLLQSSYATPVDL 198
Query: 685 YRFGVVLLELVIRKQP 700
+ G + E+ RK
Sbjct: 199 WSVGCIFAEMFRRKPL 214
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (128), Expect = 4e-08
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
V +DIK N++L++D K+ DFGL + + + T + Y+ PE
Sbjct: 127 VYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGT-PEYLAPEVLEDNDYGRA 185
Query: 682 DNIYRFGVVLLELVIRKQP 700
+ + GVV+ E++ + P
Sbjct: 186 VDWWGLGVVMYEMMCGRLP 204
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 52.8 bits (126), Expect = 4e-08
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 624 KDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDN 683
+D+K NILL++D + K+ DFG + + +V SY+ PE +
Sbjct: 134 RDLKPENILLDDDMNIKLTDFGFSCQLDP--GEKLREVCGTPSYLAPEIIECSMNDNHPG 191
Query: 684 ------IYRFGVVLLELVIRKQP 700
++ GV++ L+ P
Sbjct: 192 YGKEVDMWSTGVIMYTLLAGSPP 214
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (122), Expect = 7e-08
Identities = 35/234 (14%), Positives = 72/234 (30%), Gaps = 8/234 (3%)
Query: 353 NCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLD 412
+CS + +K++ IP +L + +E+ L + F LEK++
Sbjct: 7 HCS-NRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFS---GFGDLEKIE 59
Query: 413 LSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPE 472
+S N + I ++ + N N+ L +N
Sbjct: 60 ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 119
Query: 473 KIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSGPIPK 532
+ + LQ + L + + +S+ + + + ++ +G
Sbjct: 120 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLD 179
Query: 533 ELGSCVVVLTGYIPR-SLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLS 585
EL +P S V L++S ++ L NL L
Sbjct: 180 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (110), Expect = 2e-06
Identities = 33/237 (13%), Positives = 63/237 (26%), Gaps = 12/237 (5%)
Query: 204 KSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263
+ + +P L +L L + F+ L +++S N +
Sbjct: 11 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVL 66
Query: 264 GNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPL 323
I ++ + + L L LQ S + +
Sbjct: 67 EVIEADVFS-----NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 121
Query: 324 PSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVE 383
+ + N N VG + L+ N + N ++
Sbjct: 122 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL 181
Query: 384 INLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSN 440
D N L DVF S LD+S + + NL+ ++ +
Sbjct: 182 NLSDNNNLEELPNDVFH---GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 2e-04
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 4/91 (4%)
Query: 178 WLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLL 237
L L N + + N + LD+S +
Sbjct: 154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 213
Query: 238 SGSLTVSLFTNLQSLSYLDVSNNLLSGNIPP 268
SL NL+ L N +P
Sbjct: 214 H-SLPSYGLENLKKLRARSTYNL---KKLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 0.001
Identities = 34/232 (14%), Positives = 67/232 (28%), Gaps = 11/232 (4%)
Query: 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVS 244
C S E+PS+L + L F L+ +++S N + +
Sbjct: 15 CQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 72
Query: 245 LFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVL 304
+F+NL L + + I PE + + S K
Sbjct: 73 VFSNLPKLHEIRIEKANNLLYINPEAFQ------NLPNLQYLLISNTGIKHLPDVHKIHS 126
Query: 305 AELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSN 364
+ + +N + S++G + +WLN N + + N
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186
Query: 365 NKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSN 416
N L + + V +++ + NL +L +
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNL 235
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 0.001
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 125 LFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPS 171
S +L++S+ + PS + NLK+L+ S L LP+
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT 240
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Score = 52.2 bits (124), Expect = 7e-08
Identities = 18/79 (22%), Positives = 37/79 (46%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+K N+L+N + + K+ DFGLAR + ++ + P ++K +
Sbjct: 122 LHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTT 181
Query: 682 DNIYRFGVVLLELVIRKQP 700
+I+ G + E+V
Sbjct: 182 IDIWSVGCIFAEMVNGTPL 200
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Score = 41.8 bits (97), Expect = 2e-04
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 601 IGGGGFGTVFKGTMPDGKTVAVKK 624
IG G +G V+K G+T A+KK
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKK 33
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (124), Expect = 1e-07
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS--TDVASAISYVPPEY-GRARKANER 681
D+K SN+LLN D K+ DFGLAR+ H T+ + Y PE ++ +
Sbjct: 134 DLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKS 193
Query: 682 DNIYRFGVVLLELVIRKQP 700
+I+ G +L E++ +
Sbjct: 194 IDIWSVGCILAEMLSNRPI 212
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 8e-04
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 589 FDGNNKFCEKNGIGGGGFGTVFKGT-MPDGKTVAVKKDIKASNILLNEDF 637
FD ++ + IG G +G V + VA+KK + +
Sbjct: 4 FDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRT 53
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 52.2 bits (123), Expect = 1e-07
Identities = 35/309 (11%), Positives = 90/309 (29%), Gaps = 19/309 (6%)
Query: 201 KQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSL---FTNLQSLSYLDV 257
K LK + +V L E ++++ LS N + L + + L +
Sbjct: 8 KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66
Query: 258 SNN---LLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSA 314
S+ + IP + L + ++ S + +
Sbjct: 67 SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126
Query: 315 GMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCS-MLKYIRLSNNKLSGSIPR 373
++ + ++ + +N + L+ + + R
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186
Query: 374 ELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQ 433
L+ + + + +E + + + +++ + + + + +++
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246
Query: 434 ILKLNSNFFNGSIPMRLGD------STSLNILELGNNNLNGSIPEKIAD-----LAQLQF 482
L LN + + D + L L L N + + + L F
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306
Query: 483 LDLSYNNLS 491
L+L+ N S
Sbjct: 307 LELNGNRFS 315
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 41.4 bits (95), Expect = 3e-04
Identities = 33/329 (10%), Positives = 87/329 (26%), Gaps = 38/329 (11%)
Query: 120 PVSPLLFDLSKLRVLNLSQNLL-------FGQPSPQVSNLKRLKMLSLGENQLSGSLPSQ 172
V +L + ++ + LS N + + +L+ + + ++ +P
Sbjct: 22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81
Query: 173 LGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDL 232
L +L ++ + ++ S + + + L +
Sbjct: 82 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141
Query: 233 SDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQS 292
+ L ++ S + N L +G++ + + G
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201
Query: 293 ELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVG 352
+ + L + + + +
Sbjct: 202 GIEHLLLE---------------------GLAYCQELKVLDLQDNTFTHLGSSALAIALK 240
Query: 353 NCSMLKYIRLSNNKLSGSIPRELND------SESLVEINLDGNMLSGTIEDVFGRC--TN 404
+ L+ + L++ LS + D + L + L N +
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300
Query: 405 LSQLEKLDLSSNMLT--GRIPKEIGNLRS 431
+ L L+L+ N + + EI + S
Sbjct: 301 MPDLLFLELNGNRFSEEDDVVDEIREVFS 329
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 40.2 bits (92), Expect = 6e-04
Identities = 32/306 (10%), Positives = 76/306 (24%), Gaps = 33/306 (10%)
Query: 322 PLPSWLGKWNQMESVWLNNNQF----IGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELND 377
+ + L + + ++ + L+ N + + + L+ S+
Sbjct: 22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 81
Query: 378 SESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKL 437
L++ L L + LS + + L K+
Sbjct: 82 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 141
Query: 438 NSNFFNGSIPMRLGDSTSLNILELGNNNLN----GSIPEKIADLAQLQFLDLSYNNLSRP 493
++ + ++ L + G N L + L + + N +
Sbjct: 142 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE 201
Query: 494 ILSKHSSY---------------------FHEVNIPDLSYSHNYRKFDLSYNMLSGPIPK 532
+ L N R+ L+ +LS
Sbjct: 202 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 261
Query: 533 ELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYNEFDGN 592
+ + L L + + + L + L L+L+ N F
Sbjct: 262 AVVDA---FSKLENIGLQTLRLQ-YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 317
Query: 593 NKFCEK 598
+ ++
Sbjct: 318 DDVVDE 323
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 1e-07
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKS---HISTDVASAISYVPPEYGRARKA 678
+ +D+KA+N+L+ D K+ DFGLAR S K+ + T+ + Y PPE +
Sbjct: 139 LHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERD 198
Query: 679 -NERDNIYRFGVVLLELVIRKQP 700
+++ G ++ E+ R
Sbjct: 199 YGPPIDLWGAGCIMAEMWTRSPI 221
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 50.9 bits (121), Expect = 2e-07
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHI--STDVASAISYVPPEYGRARKAN 679
+ +D+K +NI+++ KV+DFG+AR I+D + + + V Y+ PE R +
Sbjct: 133 IHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVD 192
Query: 680 ERDNIYRFGVVLLELVIRKQP 700
R ++Y G VL E++ + P
Sbjct: 193 ARSDVYSLGCVLYEVLTGEPP 213
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 51.3 bits (122), Expect = 2e-07
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 11/87 (12%)
Query: 625 DIKASNILLNEDFD-----AKVLDFGLARLISDCKSHI------STDVASAISYVPPEYG 673
DIK N L+ V+DFG+ + D + +++ Y+
Sbjct: 126 DIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTH 185
Query: 674 RARKANERDNIYRFGVVLLELVIRKQP 700
R+ + RD++ G V + + P
Sbjct: 186 LGREQSRRDDLEALGHVFMYFLRGSLP 212
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 37.5 bits (86), Expect = 0.004
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 601 IGGGGFGTVFKGT-MPDGKTVAVKKDIKASN 630
IG G FG +F+GT + + + VA+K + + S+
Sbjct: 13 IGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD 43
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (122), Expect = 2e-07
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 622 VKKDIKASNILLNEDFDA--KVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKAN 679
DI+ NI+ + K+++FG AR + + A Y PE + +
Sbjct: 124 GHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPE--YYAPEVHQHDVVS 181
Query: 680 ERDNIYRFGVVLLELVIRKQP 700
+++ G ++ L+ P
Sbjct: 182 TATDMWSLGTLVYVLLSGINP 202
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.3 bits (122), Expect = 2e-07
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
V +D+K +NILL+E ++ D GLA S K H S + P + +
Sbjct: 129 VYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVG--THGYMAPEVLQKGVAYDSS 186
Query: 682 DNIYRFGVVLLELVIRKQP 700
+ + G +L +L+ P
Sbjct: 187 ADWFSLGCMLFKLLRGHSP 205
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (120), Expect = 2e-07
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS-AISYVPPEYGRARKANE 680
+ +D+ A N+L+ ED K+ DFGLAR I + T + ++ PE R
Sbjct: 157 IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTH 216
Query: 681 RDNIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNPIAKP 723
+ +++ FGV+L E+ P +++ + + KP
Sbjct: 217 QSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKP 259
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 4e-07
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 606 FGTVFKGTMPDGKTVAVKKDIKASNILLNEDFDA----KVLDFGLARLISDCKSHISTDV 661
+ G D+K NI+L + K++DFGLA I ++
Sbjct: 119 LKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEF--KNI 176
Query: 662 ASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQP 700
+V PE +++ GV+ L+ P
Sbjct: 177 FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 215
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 48.9 bits (115), Expect = 5e-07
Identities = 33/194 (17%), Positives = 62/194 (31%), Gaps = 17/194 (8%)
Query: 403 TNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELG 462
++ K +L +T + + L SI + N++ + ++ L L
Sbjct: 21 DAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76
Query: 463 NNNLNGSI------PEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNY 516
N L L + + DLS + + S + +I L +
Sbjct: 77 GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136
Query: 517 RKFDLSYNMLSGPIPKELGSCVVVLTGYIPR-----SLGHLSCSVKLNLSGNKLSVLVPT 571
L N ++ + + L+ + L L+ L LS N +S L
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--R 194
Query: 572 SFGNLNGLTNLDLS 585
+ L L L+L
Sbjct: 195 ALAGLKNLDVLELF 208
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 31/216 (14%), Positives = 72/216 (33%), Gaps = 29/216 (13%)
Query: 224 LTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGI 283
+L ++ ++T + L S+ + +N+ + I +L ++ +L
Sbjct: 23 FAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Query: 284 NQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQF 343
N+ T L N KN + + K + +
Sbjct: 78 NKLTDIKP--LANLKNLGWL------------FLDENKVKDLSSLKDLKKLKSLSLEHNG 123
Query: 344 IGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCT 403
I I V + +N ++ L ++L + + +
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--------LA 175
Query: 404 NLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNS 439
L++L+ L LS N ++ + + L+++ +L+L S
Sbjct: 176 GLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 21/194 (10%), Positives = 48/194 (24%), Gaps = 14/194 (7%)
Query: 199 DMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVS 258
+ + V EL + + +++ + + N+ L ++
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQYLPNVTK---LFLN 76
Query: 259 NNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSA---- 314
N L+ P + S++ I
Sbjct: 77 GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136
Query: 315 --GMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIP 372
+ + + I I + + L+ + LS N +S
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD--L 193
Query: 373 RELNDSESLVEINL 386
R L ++L + L
Sbjct: 194 RALAGLKNLDVLEL 207
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 39.6 bits (91), Expect = 6e-04
Identities = 30/194 (15%), Positives = 59/194 (30%), Gaps = 45/194 (23%)
Query: 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGEN 163
+ L+ +S+ V+ +L+ + + + + + + L + L L N
Sbjct: 23 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78
Query: 164 QLSGSLPSQLGVLTWLETLSLCSN------------------SFTGEMPSELGDMKQLKS 205
+L+ P L + L + QL+S
Sbjct: 79 KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138
Query: 206 LDFSGNGFNGTV--------------------PIRLGELTRLQDLDLSDNLLSGSLTVSL 245
L N + L LT+LQ+L LS N +S +
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS---DLRA 195
Query: 246 FTNLQSLSYLDVSN 259
L++L L++ +
Sbjct: 196 LAGLKNLDVLELFS 209
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (116), Expect = 7e-07
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 622 VKKDIKASNILLNED-FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA-N 679
+ +DIK NIL++ + + K++DFG L+ D + TD Y PPE+ R +
Sbjct: 132 LHRDIKDENILIDLNRGELKLIDFGSGALLKD---TVYTDFDGTRVYSPPEWIRYHRYHG 188
Query: 680 ERDNIYRFGVVLLELVIRKQPTG---------PKFED------KDIVVGCVSDNPIAKPG 724
++ G++L ++V P F + ++ C++ P +P
Sbjct: 189 RSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPT 248
Query: 725 M 725
Sbjct: 249 F 249
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Score = 49.3 bits (117), Expect = 8e-07
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 622 VKKDIKASNILLNEDFDA--KVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKAN 679
V DIK NI+ + K++DFGLA ++ I + + PE
Sbjct: 149 VHLDIKPENIMCETKKASSVKIIDFGLATKLNP--DEIVKVTTATAEFAAPEIVDREPVG 206
Query: 680 ERDNIYRFGVVLLELVIRKQP 700
+++ GV+ L+ P
Sbjct: 207 FYTDMWAIGVLGYVLLSGLSP 227
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.5 bits (112), Expect = 4e-06
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+ +D+K N+L+++ +V DFG A+ + + + PE ++ N+
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPE----ALAPEIILSKGYNKA 218
Query: 682 DNIYRFGVVLLELVIRKQP 700
+ + GV++ E+ P
Sbjct: 219 VDWWALGVLIYEMAAGYPP 237
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (110), Expect = 6e-06
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 622 VKKDIKASNILLN---EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA 678
+D+K N+L + K+ DFG A+ + S + YV PE K
Sbjct: 133 AHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYT--PYYVAPEVLGPEKY 190
Query: 679 NERDNIYRFGVVLLELVIRKQP 700
++ +++ GV++ L+ P
Sbjct: 191 DKSCDMWSLGVIMYILLCGYPP 212
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.0 bits (106), Expect = 2e-05
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
L+ED + DFGL+++ + + YV PE + ++ +
Sbjct: 135 PENLLYYSLDEDSKIMISDFGLSKMEDP--GSVLSTACGTPGYVAPEVLAQKPYSKAVDC 192
Query: 685 YRFGVVLLELVIRKQP 700
+ GV+ L+ P
Sbjct: 193 WSIGVIAYILLCGYPP 208
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 2e-05
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 622 VKKDIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPE--YGRARKAN 679
+ +DIK NILL+ + + DFGL++ ++ + D I Y+ P+ G +
Sbjct: 151 IYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHD 210
Query: 680 ERDNIYRFGVVLLELVIRKQP 700
+ + + GV++ EL+ P
Sbjct: 211 KAVDWWSLGVLMYELLTGASP 231
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Score = 44.1 bits (103), Expect = 4e-05
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 623 KKDIKASNILL-NEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANER 681
+D+K N+++ +E +++D+GLA + + + VAS P + +
Sbjct: 152 HRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEY-NVRVASRYFKGPELLVDYQMYDYS 210
Query: 682 DNIYRFGVVLLELVIRKQPTGPKFEDKDIVV 712
+++ G +L ++ RK+P ++ D +V
Sbjct: 211 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLV 241
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 8e-05
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+K N+ +NED + K+LDFGLAR S ++ V + P + + +I
Sbjct: 146 DLKPGNLAVNEDCELKILDFGLARQAD---SEMTGYVVTRWYRAPEVILNWMRYTQTVDI 202
Query: 685 YRFGVVLLELVIRKQP 700
+ G ++ E++ K
Sbjct: 203 WSVGCIMAEMITGKTL 218
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.5 bits (99), Expect = 9e-05
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 624 KDIKASNILLNEDFDAKVL---DFGLARLISDCKSHI------STDVASAISYVPPEYGR 674
+D+K N L+ ++ DFGLA+ D ++H + ++ Y
Sbjct: 127 RDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHL 186
Query: 675 ARKANERDNIYRFGVVLLELVIRK 698
+ + RD++ G VL+ +
Sbjct: 187 GIEQSRRDDLESLGYVLMYFNLGS 210
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 1e-04
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 622 VKKDIKASNILLNED-FDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANE 680
+DIK N+LL+ D K+ DFG A+ + + + S P A
Sbjct: 144 CHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR-GEPNVSYICSRYYRAPELIFGATDYTS 202
Query: 681 RDNIYRFGVVLLELVIRKQP 700
+++ G VL EL++ +
Sbjct: 203 SIDVWSAGCVLAELLLGQPI 222
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 0.002
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 595 FCEKNGIGGGGFGTVFKGTMPD-GKTVAVKKDIKASNILLNE 635
+ + IG G FG V++ + D G+ VA+KK ++ E
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE 63
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 1e-04
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+K SN+ +NED + K+LDFGLAR D ++ VA+ P N+ +I
Sbjct: 146 DLKPSNLAVNEDCELKILDFGLARHTDD---EMTGYVATRWYRAPEIMLNWMHYNQTVDI 202
Query: 685 YRFGVVLLELVIRKQP 700
+ G ++ EL+ +
Sbjct: 203 WSVGCIMAELLTGRTL 218
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 40.9 bits (95), Expect = 2e-04
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 601 IGGGGFGTVFKGTMPDGKTVAVK 623
+G G VF VK
Sbjct: 8 MGEGKESAVFNCYSEKFGECVVK 30
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 11/188 (5%)
Query: 200 MKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSN 259
+ + TV +L ++ L + ++ L +L+ ++ SN
Sbjct: 17 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 71
Query: 260 NLLSG-----NIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSA 314
N L+ N+ + L + + + L N + + L+ T
Sbjct: 72 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131
Query: 315 GMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG-SIPR 373
+ S + LN + + N + L+ + +S+NK+S S+
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLA 191
Query: 374 ELNDSESL 381
+L + ESL
Sbjct: 192 KLTNLESL 199
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.5 bits (88), Expect = 0.001
Identities = 32/212 (15%), Positives = 72/212 (33%), Gaps = 29/212 (13%)
Query: 224 LTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGI 283
L L ++ +++ + +L ++ L + +I + +L L+
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIK-SIDG-VEYLNNLT------ 65
Query: 284 NQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQF 343
++ N + + L+ T + + + N L
Sbjct: 66 ---------QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 116
Query: 344 IGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCT 403
+ N + L + LS+N +S S ++N N ++
Sbjct: 117 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL--QQLNFSSNQVTDLKP-----LA 169
Query: 404 NLSQLEKLDLSSNMLTGRIPKEIGNLRSIQIL 435
NL+ LE+LD+SSN ++ + L +++ L
Sbjct: 170 NLTTLERLDISSNKVSD--ISVLAKLTNLESL 199
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 30/144 (20%), Positives = 47/144 (32%), Gaps = 5/144 (3%)
Query: 453 STSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSY 512
++ L IP I L L+ N L R + +
Sbjct: 7 HCEGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLE--L 61
Query: 513 SHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTS 572
N +EL + + L LNL N++S ++P S
Sbjct: 62 KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Query: 573 FGNLNGLTNLDLSYNEFDGNNKFC 596
F +LN LT+L+L+ N F+ N
Sbjct: 122 FEHLNSLTSLNLASNPFNCNCHLA 145
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 5/97 (5%)
Query: 166 SGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELT 225
L L+TL+L N + MP + L SL+ + N FN +
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA----- 145
Query: 226 RLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLL 262
+ +L G+ + ++ + D+ ++
Sbjct: 146 WFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 25/144 (17%), Positives = 53/144 (36%), Gaps = 8/144 (5%)
Query: 136 LSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPS 195
L+ L+ + + Q +N R + L L ++ + + L + + N
Sbjct: 3 LTAELI--EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLD 57
Query: 196 ELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYL 255
+++LK+L + N L L +L L++N L + +L+SL+YL
Sbjct: 58 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 117
Query: 256 DVSN---NLLSGNIPPEISHLKKL 276
+ I + ++
Sbjct: 118 CILRNPVTNKKHYRLYVIYKVPQV 141
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 3e-04
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 360 IRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLT 419
++L+ + + + ++ E++L G + IE++ L Q + +D S N +
Sbjct: 1 VKLTAELIEQAA--QYTNAVRDRELDLRGYKIP-VIENLGA---TLDQFDAIDFSDNEI- 53
Query: 420 GRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLN 467
R LR ++ L +N+N L L L NN+L
Sbjct: 54 -RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 100
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.002
Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 10/138 (7%)
Query: 353 NCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLD 412
N + + L K+ I + I+ N + L +L+ L
Sbjct: 16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-----RKLDGFPLLRRLKTLL 69
Query: 413 LSSNMLTGRIPKEIGNLRSIQILKLNSNFFNG----SIPMRLGDSTSLNILELGNNNLNG 468
+++N + L + L L +N L T L IL N
Sbjct: 70 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129
Query: 469 SIPEKIADLAQLQFLDLS 486
I + Q++ LD
Sbjct: 130 YRLYVIYKVPQVRVLDFQ 147
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNI 684
D+K SNI++ D K+LDFGLAR + S + T Y PE E +I
Sbjct: 144 DLKPSNIVVKSDCTLKILDFGLAR--TAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDI 201
Query: 685 YRFGVVLLELVIRKQP 700
+ G ++ E+V K
Sbjct: 202 WSVGCIMGEMVRHKIL 217
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 0.003
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 577 NGLTNLDLSYNEFDGNNKFCEKNGIGGGGFGTVFKGT-MPDGKTVAVKK 624
N ++++ + F ++ IG G G V + VA+KK
Sbjct: 1 NQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKK 49
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.8 bits (94), Expect = 4e-04
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 622 VKKDIKASNILLN-EDFDAKVLDFGLARLISDCKSHISTD-VASAISYVPPEYGRARKAN 679
+ DIK N+L+ D ++ +A L + C Y PE
Sbjct: 148 IHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWG 207
Query: 680 ERDNIYRFGVVLLELVIRKQPTGPKFEDKDIVVGCVSDNPIAK 722
+I+ ++ EL+ FE + D+ IA+
Sbjct: 208 CGADIWSTACLIFELITGDFL----FEPDEGHSYTKDDDHIAQ 246
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.002
Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 3/150 (2%)
Query: 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQL-GVLTWLETLSLCSN 187
L +++ + + L L + Q L + L L L++ +
Sbjct: 8 HGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFT 247
P +L L+ S N ++ + + LQ+L LS N L S +
Sbjct: 67 GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125
Query: 248 NLQSLSYLDVSNNLLSGNIPPEISHLKKLS 277
+ V L + ++H+ S
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 0.002
Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 15/154 (9%)
Query: 340 NNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVF 399
+ + ++ L + L L +L V +N +M + T+ +
Sbjct: 5 KPEQVEQLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMAA-TLRIIE 61
Query: 400 GRCTNLSQLEKLDLSSNMLTGR--IPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLN 457
N+ +L L+LS+N L + + +++IL L+ N + L
Sbjct: 62 ---ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 458 ILELGNNNLNGSIPEK-------IADLAQLQFLD 484
L L N+L+ + ++ +L LD
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.95 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.95 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 99.92 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 99.92 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 99.91 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 99.91 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.91 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 99.91 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 99.9 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 99.9 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 99.9 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 99.9 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 99.9 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 99.89 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 99.89 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 99.89 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 99.89 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 99.89 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 99.89 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 99.89 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 99.88 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 99.88 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 99.88 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 99.88 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 99.88 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.88 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.88 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 99.88 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 99.88 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 99.88 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 99.87 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 99.87 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 99.87 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 99.87 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 99.87 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 99.87 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 99.87 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 99.87 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 99.86 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 99.86 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 99.86 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 99.86 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 99.86 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 99.86 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.85 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 99.85 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 99.85 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 99.85 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 99.85 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 99.85 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 99.84 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 99.84 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.84 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 99.84 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 99.84 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 99.82 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 99.82 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 99.82 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.82 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 99.82 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 99.81 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 99.81 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 99.81 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.79 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 99.79 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 99.77 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 99.75 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.73 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.72 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.7 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.69 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.69 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.67 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.66 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.64 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.64 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.63 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.63 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.52 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.52 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.51 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.5 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.43 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.39 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.35 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.27 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.26 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.23 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.23 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.2 | |
| d1zara2 | 191 | Rio2 serine protein kinase C-terminal domain {Arch | 98.39 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.35 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.22 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.51 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.47 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.65 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.58 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=5.1e-27 Score=251.55 Aligned_cols=191 Identities=29% Similarity=0.392 Sum_probs=124.4
Q ss_pred CcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCC
Q 046589 351 VGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLR 430 (729)
Q Consensus 351 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 430 (729)
+..+++++.+++++|.+++..| +...++|+.|++++|.++... .+..+++|+.|++++|.+++.. .+..++
T Consensus 193 ~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~~~--~~~~~~ 263 (384)
T d2omza2 193 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-----TLASLTNLTDLDLANNQISNLA--PLSGLT 263 (384)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCCCCG--GGTTCT
T ss_pred cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-----hhhcccccchhccccCccCCCC--cccccc
Confidence 4445566666666666654433 344556666666666665421 2344556677777777776533 266677
Q ss_pred CCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCc
Q 046589 431 SIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDL 510 (729)
Q Consensus 431 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~ 510 (729)
+|++|++++|++++.. .+..++.++.++++.|.+++ ...+..+++++.|++++|++++.. .+
T Consensus 264 ~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--------------~l 325 (384)
T d2omza2 264 KLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--------------PV 325 (384)
T ss_dssp TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--------------GG
T ss_pred cCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--------------cc
Confidence 7777777777776433 25566777777777777764 234667777777777777776421 12
Q ss_pred ccCCCCCeEecCCCcCcccCCchhhccccccccccccccccccCCceeeccCCcceeecccccccccccccccCCcc
Q 046589 511 SYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNKLSVLVPTSFGNLNGLTNLDLSYN 587 (729)
Q Consensus 511 ~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 587 (729)
..+++|+.|++++|++++ +| .+.++++|++|++++|++++.+| +.++++|+.|+|++|
T Consensus 326 ~~l~~L~~L~L~~n~l~~----------------l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 326 SSLTKLQRLFFANNKVSD----------------VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp GGCTTCCEEECCSSCCCC----------------CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred ccCCCCCEEECCCCCCCC----------------Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 255677778888777753 22 35677888888888888888765 778888888888887
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.95 E-value=7.2e-29 Score=258.80 Aligned_cols=230 Identities=28% Similarity=0.446 Sum_probs=127.4
Q ss_pred CCcEEECCCCCCCCC--CcccccCCCCCCEEeccC-CcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEE
Q 046589 130 KLRVLNLSQNLLFGQ--PSPQVSNLKRLKMLSLGE-NQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSL 206 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 206 (729)
+++.|||++|.+.+. +|+.++++++|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+.+|+++
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 455555555555542 455666666666666664 56666666666666666666666666666666666666666666
Q ss_pred EccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCC-CEEEcccccccccCCccccCCCcCCeecccccc
Q 046589 207 DFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSL-SYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQ 285 (729)
Q Consensus 207 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~ 285 (729)
++++|.+.+.+|..++++++|+++++++|.+++.+| ..+..+.++ +.++++.|++++..|..+..+..+ .+++..+.
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip-~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~ 208 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred ccccccccccCchhhccCcccceeeccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccc
Confidence 666666666666666666666666666666655555 333444443 566666666665555544443322 22222222
Q ss_pred ccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCC
Q 046589 286 FTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNN 365 (729)
Q Consensus 286 l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 365 (729)
+ .+.+|..+..+++++.+++++|.+.+.+| .++.+++|++|+|++|
T Consensus 209 ~---------------------------------~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N 254 (313)
T d1ogqa_ 209 L---------------------------------EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNN 254 (313)
T ss_dssp E---------------------------------EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSS
T ss_pred c---------------------------------ccccccccccccccccccccccccccccc-ccccccccccccCccC
Confidence 2 22333444444455555555555554433 3444555555555555
Q ss_pred CCCCCCcccccCCCCCcEEEcCCCCCCCCc
Q 046589 366 KLSGSIPRELNDSESLVEINLDGNMLSGTI 395 (729)
Q Consensus 366 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 395 (729)
+++|.+|..++++++|++|+|++|+++|.+
T Consensus 255 ~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i 284 (313)
T d1ogqa_ 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred eecccCChHHhCCCCCCEEECcCCcccccC
Confidence 555555555555444444444444444333
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.95 E-value=4.7e-29 Score=260.23 Aligned_cols=261 Identities=25% Similarity=0.415 Sum_probs=219.2
Q ss_pred cccccccchhHHHHHhcCCcEEEEcCCCCCcC--cCCccCCCCCCCcEEECCC-CCCCCCCcccccCCCCCCEEeccCCc
Q 046589 88 RLGLAIANALKDLEELLLRVVYQVLRTQSLKG--PVSPLLFDLSKLRVLNLSQ-NLLFGQPSPQVSNLKRLKMLSLGENQ 164 (729)
Q Consensus 88 ~~~~~~~~~l~~l~~~~~~~~~l~l~~~~l~~--~~~~~l~~L~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~ 164 (729)
|.|+.|... ....+|+.++|+++++.| ++|+.+++|++|++|||++ |.++|.+|++|+++++|++|+|++|+
T Consensus 38 w~gv~C~~~-----~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~ 112 (313)
T d1ogqa_ 38 WLGVLCDTD-----TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112 (313)
T ss_dssp STTEEECCS-----SSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC
T ss_pred CCCeEEeCC-----CCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccc
Confidence 666666531 013479999999999998 4889999999999999996 89999999999999999999999999
Q ss_pred CcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCC-CeeeccCCcCCCCCCh
Q 046589 165 LSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRL-QDLDLSDNLLSGSLTV 243 (729)
Q Consensus 165 l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-~~L~L~~N~l~~~~~~ 243 (729)
+.+..|..+..+.+|+++++++|.+.+.+|..+.++++|+++++++|.+.+.+|..++.+.++ +.+++++|++++..+
T Consensus 113 l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~- 191 (313)
T d1ogqa_ 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP- 191 (313)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC-
T ss_pred ccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccc-
Confidence 999999999999999999999999999999999999999999999999999999999999886 889999999987666
Q ss_pred hhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCc
Q 046589 244 SLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPL 323 (729)
Q Consensus 244 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~ 323 (729)
..+..+.. ..++++++...+.+|..+..+++++.+++..+.+++.++
T Consensus 192 ~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-------------------------------- 238 (313)
T d1ogqa_ 192 PTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-------------------------------- 238 (313)
T ss_dssp GGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--------------------------------
T ss_pred cccccccc-ccccccccccccccccccccccccccccccccccccccc--------------------------------
Confidence 56666654 479999999999999999999999998888887764322
Q ss_pred chhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCC
Q 046589 324 PSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNM 390 (729)
Q Consensus 324 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 390 (729)
.++.+++|+.|++++|++++.+|..++.+++|++|+|++|+++|.+|. ++.+++|+.+++++|+
T Consensus 239 --~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 239 --KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp --GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred --ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 344566778888888888888888888888888888888888877773 4555555555555554
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=3e-26 Score=245.48 Aligned_cols=357 Identities=25% Similarity=0.319 Sum_probs=229.6
Q ss_pred EcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCC
Q 046589 111 VLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFT 190 (729)
Q Consensus 111 ~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~ 190 (729)
.+...++++.+. ..++.+|++|++++|.++.+ +.+..+++|++|+|++|+|++ +| .++++++|++|++++|++.
T Consensus 28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~ 101 (384)
T d2omza2 28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIA 101 (384)
T ss_dssp HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccc
Confidence 344455655443 24566788888888877654 346677778888888887774 33 2777777777777777776
Q ss_pred ccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccc
Q 046589 191 GEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI 270 (729)
Q Consensus 191 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 270 (729)
+. + .++++++|+.|++++|.+++..+ ......+..+....|.+.. +...... ............ .....+
T Consensus 102 ~i-~-~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~-~~~~~~~--~~~~~~~~~~~~---~~~~~~ 171 (384)
T d2omza2 102 DI-T-PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGL--TSLQQLSFGNQV---TDLKPL 171 (384)
T ss_dssp CC-G-GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGGGTTC--TTCSEEEEEESC---CCCGGG
T ss_pred cc-c-ccccccccccccccccccccccc--ccccccccccccccccccc-ccccccc--cccccccccccc---chhhhh
Confidence 43 2 36677777777777766653322 2233444555554444431 1111110 111110000000 000000
Q ss_pred cCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCC
Q 046589 271 SHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLE 350 (729)
Q Consensus 271 ~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 350 (729)
...... .......|.. ..+.....+++++.+++++|.+.+..|
T Consensus 172 ~~~~~~---------------------------------~~~~~~~~~~--~~~~~~~~l~~~~~l~l~~n~i~~~~~-- 214 (384)
T d2omza2 172 ANLTTL---------------------------------ERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP-- 214 (384)
T ss_dssp TTCTTC---------------------------------CEEECCSSCC--CCCGGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred cccccc---------------------------------cccccccccc--ccccccccccccceeeccCCccCCCCc--
Confidence 000000 1111112221 233445667788899999988876554
Q ss_pred CcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCC
Q 046589 351 VGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLR 430 (729)
Q Consensus 351 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 430 (729)
+..+++|++|++++|+++. + ..+..+++|+.+++++|.+++..+ +..+++|++|++++|++++.. .+..++
T Consensus 215 ~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~-----~~~~~~L~~L~l~~~~l~~~~--~~~~~~ 285 (384)
T d2omza2 215 LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP-----LSGLTKLTELKLGANQISNIS--PLAGLT 285 (384)
T ss_dssp GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCCCCG--GGTTCT
T ss_pred ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc-----ccccccCCEeeccCcccCCCC--cccccc
Confidence 4567889999999998875 2 367788899999999998886543 355678899999999988543 477888
Q ss_pred CCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCc
Q 046589 431 SIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDL 510 (729)
Q Consensus 431 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~ 510 (729)
.++.++++.|.+.+ ...+..+++++.|++++|++++.. .+..+++|+.|++++|++++ + +.+
T Consensus 286 ~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l-------------~~l 347 (384)
T d2omza2 286 ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-V-------------SSL 347 (384)
T ss_dssp TCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-C-------------GGG
T ss_pred cccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-C-------------hhH
Confidence 99999999999875 234677889999999999998654 37888999999999999874 1 123
Q ss_pred ccCCCCCeEecCCCcCcccCCchhhccccccccccccccccccCCceeeccCCc
Q 046589 511 SYSHNYRKFDLSYNMLSGPIPKELGSCVVVLTGYIPRSLGHLSCSVKLNLSGNK 564 (729)
Q Consensus 511 ~~~~~l~~ldls~N~l~g~~p~~~~~~~~ll~g~ip~~~~~l~~L~~L~Ls~N~ 564 (729)
..+++|+.||+++|++++.. | +.++++|+.|+|++|.
T Consensus 348 ~~l~~L~~L~l~~N~l~~l~---------------~--l~~l~~L~~L~L~~Na 384 (384)
T d2omza2 348 ANLTNINWLSAGHNQISDLT---------------P--LANLTRITQLGLNDQA 384 (384)
T ss_dssp GGCTTCCEEECCSSCCCBCG---------------G--GTTCTTCSEEECCCEE
T ss_pred cCCCCCCEEECCCCcCCCCh---------------h--hccCCCCCEeeCCCCc
Confidence 36788999999999987532 1 5678899999999883
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1e-26 Score=236.50 Aligned_cols=137 Identities=27% Similarity=0.476 Sum_probs=115.1
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
+++...+.||+|+||+||+|.+.+++.||||.
T Consensus 13 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey~~~g 92 (272)
T d1qpca_ 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENG 92 (272)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTTC
T ss_pred HHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEeCCCC
Confidence 34555667999999999999998888999996
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|+||+||++++++.+||+|||+|+..............+
T Consensus 93 ~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~g 172 (272)
T d1qpca_ 93 SLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKF 172 (272)
T ss_dssp BHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCC
T ss_pred cHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEccCCccccccccCC
Confidence 999999999999999999999999876433333345677
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcc---------------------h--HHHHhhcccCCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFE---------------------D--KDIVVGCVSDNPI 720 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~---------------------~--~~l~~~c~~~~p~ 720 (729)
+.+|+|||......++.++|||||||++|||+||+.|+..... + .+++..||+.+|+
T Consensus 173 t~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~ 252 (272)
T d1qpca_ 173 PIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPE 252 (272)
T ss_dssp CTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred cccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCcccChHHHHHHHHHHcCCCHh
Confidence 8899999988878899999999999999999998777552111 1 1799999999999
Q ss_pred CCCCccccC
Q 046589 721 AKPGMLRVQ 729 (729)
Q Consensus 721 ~Rp~~~~v~ 729 (729)
+||||++|+
T Consensus 253 ~Rpt~~ei~ 261 (272)
T d1qpca_ 253 DRPTFDYLR 261 (272)
T ss_dssp GSCCHHHHH
T ss_pred HCcCHHHHH
Confidence 999999873
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.8e-26 Score=233.68 Aligned_cols=136 Identities=26% Similarity=0.412 Sum_probs=103.7
Q ss_pred ccccccCCCCCCcceEEEeecCCCCceeeec-------------------------------------------------
Q 046589 594 KFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------- 624 (729)
Q Consensus 594 ~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------- 624 (729)
++...+.||+|+||+||+|.+.+++.||||.
T Consensus 6 ~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g 85 (263)
T d1sm2a_ 6 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHG 85 (263)
T ss_dssp CEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTC
T ss_pred HcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCC
Confidence 4555567999999999999999889999996
Q ss_pred ----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceeccccc
Q 046589 625 ----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASA 664 (729)
Q Consensus 625 ----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~ 664 (729)
|+||+||++|.++.+||+|||+|+..............+|
T Consensus 86 ~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt 165 (263)
T d1sm2a_ 86 CLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFP 165 (263)
T ss_dssp BHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC------------------C
T ss_pred cHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCCCceeecceecC
Confidence 9999999999999999999999988664333333456788
Q ss_pred ccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcc---------------------h--HHHHhhcccCCCCC
Q 046589 665 ISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFE---------------------D--KDIVVGCVSDNPIA 721 (729)
Q Consensus 665 ~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~---------------------~--~~l~~~c~~~~p~~ 721 (729)
..|+|||.+....++.++|||||||++|||+|++.|+..... + .+++..||+.+|++
T Consensus 166 ~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~ 245 (263)
T d1sm2a_ 166 VKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPED 245 (263)
T ss_dssp TTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred cccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHccCCHhH
Confidence 999999999888999999999999999999997666542111 0 07999999999999
Q ss_pred CCCccccC
Q 046589 722 KPGMLRVQ 729 (729)
Q Consensus 722 Rp~~~~v~ 729 (729)
||||+||+
T Consensus 246 Rps~~~il 253 (263)
T d1sm2a_ 246 RPAFSRLL 253 (263)
T ss_dssp SCCHHHHH
T ss_pred CcCHHHHH
Confidence 99999874
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.6e-23 Score=217.01 Aligned_cols=269 Identities=22% Similarity=0.286 Sum_probs=130.8
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEcc
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 209 (729)
..+.+|=++++++.+++ .+ .+++++|+|++|+|+...+..|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus 11 ~~~~~~C~~~~L~~lP~-~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPK-DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp ETTEEECTTSCCCSCCC-SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEecCCCCCccCC-CC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 44555555555555432 22 1356666666666653333456666666666666666665555556666666666666
Q ss_pred CCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeecccccccccc
Q 046589 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGS 289 (729)
Q Consensus 210 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~ 289 (729)
+|+++ .+|..+ ...++.|++.+|.+. .++...+.....+..++...|....
T Consensus 88 ~n~l~-~l~~~~--~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~------------------------- 138 (305)
T d1xkua_ 88 KNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS------------------------- 138 (305)
T ss_dssp SSCCS-BCCSSC--CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCG-------------------------
T ss_pred CCccC-cCccch--hhhhhhhhccccchh-hhhhhhhhccccccccccccccccc-------------------------
Confidence 66655 333322 234555555555554 3333333333333333333322110
Q ss_pred ccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCC
Q 046589 290 IQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSG 369 (729)
Q Consensus 290 ~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 369 (729)
....+..+..+++|+.+++++|.+.. +|.. .+++|++|++++|..++
T Consensus 139 ------------------------------~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~ 185 (305)
T d1xkua_ 139 ------------------------------SGIENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITK 185 (305)
T ss_dssp ------------------------------GGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCE
T ss_pred ------------------------------cCCCccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCC
Confidence 00111222333444555555554432 2221 13455555555555554
Q ss_pred CCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcC
Q 046589 370 SIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMR 449 (729)
Q Consensus 370 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 449 (729)
..+..+..++.+ ++|++++|.+++..+..+.++++|++|+|++|+++ .+|.+
T Consensus 186 ~~~~~~~~~~~l---------------------------~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~ 237 (305)
T d1xkua_ 186 VDAASLKGLNNL---------------------------AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 237 (305)
T ss_dssp ECTGGGTTCTTC---------------------------CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred CChhHhhccccc---------------------------cccccccccccccccccccccccceeeeccccccc-ccccc
Confidence 444444444444 44444445444444445555555555555555554 34445
Q ss_pred ccCCCCCCEEEcccccCCccCchh------hhcCCCCCEEeCCCCcCc
Q 046589 450 LGDSTSLNILELGNNNLNGSIPEK------IADLAQLQFLDLSYNNLS 491 (729)
Q Consensus 450 ~~~l~~L~~L~Ls~N~l~~~~p~~------l~~l~~L~~LdLs~N~l~ 491 (729)
+..+++|++|+|++|+|+...... ...+.+|+.|++++|+++
T Consensus 238 l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 555555555555555555322222 234456677777777664
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.3e-25 Score=226.11 Aligned_cols=137 Identities=27% Similarity=0.387 Sum_probs=116.2
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
++|...+.||+|+||+||+|++.+++.||||.
T Consensus 4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~ 83 (258)
T d1k2pa_ 4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMAN 83 (258)
T ss_dssp CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTT
T ss_pred HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCC
Confidence 35566678999999999999999888999996
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|+||+||+++.++.+||+|||+++..............+
T Consensus 84 g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~ 163 (258)
T d1k2pa_ 84 GCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKF 163 (258)
T ss_dssp EEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCC
T ss_pred CcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCCceeecccCC
Confidence 999999999999999999999998765443333445678
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCCCcc--------------------h--HHHHhhcccCCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGPKFE--------------------D--KDIVVGCVSDNPI 720 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~~~~--------------------~--~~l~~~c~~~~p~ 720 (729)
|..|+|||......++.++|||||||++|||+| |+.|+...-. + .+++.+||+.+|+
T Consensus 164 t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~ 243 (258)
T d1k2pa_ 164 PVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKAD 243 (258)
T ss_dssp CGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGG
T ss_pred CCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccccHHHHHHHHHHccCCHh
Confidence 889999999888889999999999999999998 7888763101 0 1899999999999
Q ss_pred CCCCccccC
Q 046589 721 AKPGMLRVQ 729 (729)
Q Consensus 721 ~Rp~~~~v~ 729 (729)
+||||++++
T Consensus 244 ~RPt~~eil 252 (258)
T d1k2pa_ 244 ERPTFKILL 252 (258)
T ss_dssp GSCCHHHHH
T ss_pred HCcCHHHHH
Confidence 999999874
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9.1e-26 Score=231.00 Aligned_cols=105 Identities=24% Similarity=0.432 Sum_probs=79.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc--ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+|||++.++.+||+|||+|+........ ......+|..|+|||......++.++|||||||++|||+||+.|+.
T Consensus 135 DlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~ 214 (283)
T d1mqba_ 135 DLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPY 214 (283)
T ss_dssp CCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred ccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCcc
Confidence 99999999999999999999999886533221 2234567889999999888899999999999999999999777755
Q ss_pred CCcc---------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PKFE---------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~~---------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.... .+ +++.+||+.+|++||||+||+
T Consensus 215 ~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil 264 (283)
T d1mqba_ 215 WELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIV 264 (283)
T ss_dssp TTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred ccCCHHHHHHHHhccCCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHH
Confidence 2111 11 899999999999999999873
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=6e-23 Score=212.58 Aligned_cols=268 Identities=24% Similarity=0.277 Sum_probs=195.3
Q ss_pred EEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeecc
Q 046589 108 VYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187 (729)
Q Consensus 108 ~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N 187 (729)
+.++-++++++ .+|+.+. +++++|+|++|+++.+++.+|.++++|++|++++|.+....|..|..+++|++|++++|
T Consensus 13 ~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n 89 (305)
T d1xkua_ 13 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89 (305)
T ss_dssp TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence 45677777777 6777664 68999999999999998889999999999999999999888899999999999999999
Q ss_pred CCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCC-CCChhhhccCCCCCEEEcccccccccC
Q 046589 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSG-SLTVSLFTNLQSLSYLDVSNNLLSGNI 266 (729)
Q Consensus 188 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 266 (729)
+++ .+|..+ ...++.|+++.|.+....+..+.....++.++...|.... ......+..+++|+++++++|.+.. +
T Consensus 90 ~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l 165 (305)
T d1xkua_ 90 QLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-I 165 (305)
T ss_dssp CCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-C
T ss_pred ccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-c
Confidence 998 566543 4689999999999997777778888889999988876532 1223567888999999999988763 3
Q ss_pred CccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceec
Q 046589 267 PPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGR 346 (729)
Q Consensus 267 p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 346 (729)
|..+ .++|+.++++.|..+ +..+..+..++.++.|++++|.+.+.
T Consensus 166 ~~~~--~~~L~~L~l~~n~~~---------------------------------~~~~~~~~~~~~l~~L~~s~n~l~~~ 210 (305)
T d1xkua_ 166 PQGL--PPSLTELHLDGNKIT---------------------------------KVDAASLKGLNNLAKLGLSFNSISAV 210 (305)
T ss_dssp CSSC--CTTCSEEECTTSCCC---------------------------------EECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred Cccc--CCccCEEECCCCcCC---------------------------------CCChhHhhcccccccccccccccccc
Confidence 4322 345555555554433 23344455566677777777777777
Q ss_pred CCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccc---cCCCCCCcEEEcCCCcC
Q 046589 347 IPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGR---CTNLSQLEKLDLSSNML 418 (729)
Q Consensus 347 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---~~~l~~L~~L~Ls~N~l 418 (729)
.+..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|+++......|.. ...+.+|+.|+|++|.+
T Consensus 211 ~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 211 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence 6777777777777777777776 45666777777777777777776554444421 22334455555555544
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=1e-25 Score=230.82 Aligned_cols=104 Identities=27% Similarity=0.467 Sum_probs=88.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+|||++.++.+||+|||+|+..............++..|+|||...+..++.++|||||||++|||+||+.|+...
T Consensus 140 DlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~ 219 (287)
T d1opja_ 140 DLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG 219 (287)
T ss_dssp CCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred ccccCeEEECCCCcEEEccccceeecCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCc
Confidence 99999999999999999999999987654434344566788999999988889999999999999999999988876531
Q ss_pred cc---------------------hH--HHHhhcccCCCCCCCCcccc
Q 046589 705 FE---------------------DK--DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 705 ~~---------------------~~--~l~~~c~~~~p~~Rp~~~~v 728 (729)
.. ++ +++..||+.+|++||||++|
T Consensus 220 ~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei 266 (287)
T d1opja_ 220 IDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 266 (287)
T ss_dssp CCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred chHHHHHHHHhcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 11 11 89999999999999999987
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.6e-25 Score=226.20 Aligned_cols=105 Identities=29% Similarity=0.503 Sum_probs=81.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCC---CCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRA---RKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~---~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+|||++.++.+||+|||+|+....... .......+|+.|+|||.+.. ..++.++|||||||++|||+||+.|
T Consensus 129 DlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~P 208 (276)
T d1uwha_ 129 DLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 208 (276)
T ss_dssp CCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred ccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCC
Confidence 9999999999999999999999987653222 22345678999999997643 4579999999999999999999999
Q ss_pred CCCC--cc-----------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 701 TGPK--FE-----------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 701 ~~~~--~~-----------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+... .. + .+++.+||+.+|++||||+||+
T Consensus 209 f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il 264 (276)
T d1uwha_ 209 YSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 264 (276)
T ss_dssp TTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCCChHHHHHHHHhcCCCCCcchhccccchHHHHHHHHHHcCCCHhHCcCHHHHH
Confidence 8621 00 0 1799999999999999999874
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.5e-25 Score=227.22 Aligned_cols=137 Identities=30% Similarity=0.517 Sum_probs=108.9
Q ss_pred cccccccCCCCCCcceEEEeecCCCCceeeec------------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------ 624 (729)
+++.....||+|+||+||+|...+++.||||.
T Consensus 17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv~Ey~~~g 96 (285)
T d1fmka3 17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKG 96 (285)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTTC
T ss_pred HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEecCCeEEEEEecCCC
Confidence 45666677999999999999998888999996
Q ss_pred -----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceecccc
Q 046589 625 -----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVAS 663 (729)
Q Consensus 625 -----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~ 663 (729)
|+||+||++|.++++||+|||+|+..............+
T Consensus 97 ~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~g 176 (285)
T d1fmka3 97 SLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKF 176 (285)
T ss_dssp BHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------C
T ss_pred chhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhccCCCceeeccccc
Confidence 999999999999999999999998865443333445678
Q ss_pred cccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcc---------------------hH--HHHhhcccCCCC
Q 046589 664 AISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFE---------------------DK--DIVVGCVSDNPI 720 (729)
Q Consensus 664 ~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~---------------------~~--~l~~~c~~~~p~ 720 (729)
+..|+|||+.....++.++|||||||++|||+||+.|+..... ++ +++.+||+.+|+
T Consensus 177 t~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~ 256 (285)
T d1fmka3 177 PIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPE 256 (285)
T ss_dssp CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred cccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccCHHHHHHHHHHcccCHh
Confidence 8999999999888999999999999999999998777652111 11 899999999999
Q ss_pred CCCCccccC
Q 046589 721 AKPGMLRVQ 729 (729)
Q Consensus 721 ~Rp~~~~v~ 729 (729)
+||+|++|+
T Consensus 257 ~Rps~~~i~ 265 (285)
T d1fmka3 257 ERPTFEYLQ 265 (285)
T ss_dssp GSCCHHHHH
T ss_pred HCcCHHHHH
Confidence 999999873
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=6.1e-25 Score=221.69 Aligned_cols=102 Identities=26% Similarity=0.483 Sum_probs=87.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+|+..... ......||+.|+|||...+..++.++||||+||++|||+||+.|+...
T Consensus 131 DiKp~Nill~~~~~~kl~DFG~a~~~~~~---~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~ 207 (263)
T d2j4za1 131 DIKPENLLLGSAGELKIADFGWSVHAPSS---RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN 207 (263)
T ss_dssp CCCGGGEEECTTSCEEECCCCSCSCCCCC---CCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred eeccccceecCCCCEeecccceeeecCCC---cccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCC
Confidence 99999999999999999999999875432 223467899999999998888999999999999999999999998731
Q ss_pred cc-------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 705 FE-------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~~-------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
-. ++ +++.+|++.+|++|||++|++
T Consensus 208 ~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil 253 (263)
T d2j4za1 208 TYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVL 253 (263)
T ss_dssp SHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CHHHHHHHHHcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHH
Confidence 11 11 799999999999999999873
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.8e-24 Score=221.45 Aligned_cols=135 Identities=23% Similarity=0.387 Sum_probs=115.1
Q ss_pred ccccccCCCCCCcceEEEeec-CCCCceeeec------------------------------------------------
Q 046589 594 KFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 594 ~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~------------------------------------------------ 624 (729)
.|...+.||+|+||+||+|+. .+|+.||||.
T Consensus 21 ~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~ 100 (293)
T d1yhwa1 21 KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLA 100 (293)
T ss_dssp TBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred ccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecC
Confidence 466667799999999999987 5899999996
Q ss_pred ----------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceeccccc
Q 046589 625 ----------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASA 664 (729)
Q Consensus 625 ----------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~ 664 (729)
|+||+||+++.++.+|++|||+|+...... .......||
T Consensus 101 gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~-~~~~~~~gt 179 (293)
T d1yhwa1 101 GGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ-SKRSTMVGT 179 (293)
T ss_dssp TCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTT-CCBCCCCSC
T ss_pred CCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeecccc-ccccccccC
Confidence 999999999999999999999998865422 223456789
Q ss_pred ccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcc----------------------hH--HHHhhcccCCCC
Q 046589 665 ISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFE----------------------DK--DIVVGCVSDNPI 720 (729)
Q Consensus 665 ~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~----------------------~~--~l~~~c~~~~p~ 720 (729)
+.|+|||...+..++.++||||+||++|||+||+.||..... +. +++.+|++.+|+
T Consensus 180 ~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~ 259 (293)
T d1yhwa1 180 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVE 259 (293)
T ss_dssp GGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTT
T ss_pred CCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCChh
Confidence 999999998888899999999999999999999999863110 01 799999999999
Q ss_pred CCCCccccC
Q 046589 721 AKPGMLRVQ 729 (729)
Q Consensus 721 ~Rp~~~~v~ 729 (729)
+|||++|++
T Consensus 260 ~R~s~~eil 268 (293)
T d1yhwa1 260 KRGSAKELL 268 (293)
T ss_dssp TSCCHHHHT
T ss_pred HCcCHHHHh
Confidence 999999874
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.4e-25 Score=224.49 Aligned_cols=104 Identities=24% Similarity=0.418 Sum_probs=82.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+||+|||+|+...... .......+|++|+|||.+....++.++|||||||++|||+||+.|+...
T Consensus 139 DiKp~NIll~~~~~vkl~DFG~a~~~~~~~-~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~ 217 (269)
T d2java1 139 DLKPANVFLDGKQNVKLGDFGLARILNHDT-SFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF 217 (269)
T ss_dssp -CCGGGEEECTTSCEEECCHHHHHHC------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cCchhhcCcCCCCcEEEeeccceeecccCC-CccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCC
Confidence 999999999999999999999998865322 2233567899999999988888999999999999999999999998631
Q ss_pred -c-------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 705 -F-------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 -~-------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. .++ +++.+|++.+|++|||++|++
T Consensus 218 ~~~~~~~~i~~~~~~~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell 264 (269)
T d2java1 218 SQKELAGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEIL 264 (269)
T ss_dssp SHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 1 111 899999999999999999873
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=5.2e-25 Score=223.07 Aligned_cols=137 Identities=25% Similarity=0.422 Sum_probs=113.9
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
++|...+.||+|+||+||+|+. .+|+.||||.
T Consensus 5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy 84 (271)
T d1nvra_ 5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 84 (271)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEec
Confidence 3566677899999999999997 4789999996
Q ss_pred -------------------------------------------cccccceEecCCccEEEeecCCccccCCCCC-cceec
Q 046589 625 -------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTD 660 (729)
Q Consensus 625 -------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~ 660 (729)
|+||+||+++.++.+||+|||+|+....... .....
T Consensus 85 ~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~ 164 (271)
T d1nvra_ 85 CSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 164 (271)
T ss_dssp CTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCC
T ss_pred cCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccccc
Confidence 9999999999999999999999987653222 22345
Q ss_pred ccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCCCC-------------------cc---hH--HHHhhcc
Q 046589 661 VASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTGPK-------------------FE---DK--DIVVGCV 715 (729)
Q Consensus 661 ~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~~~-------------------~~---~~--~l~~~c~ 715 (729)
..||+.|+|||......+ +.++||||+||++|||+||+.|+... |. ++ +++.+|+
T Consensus 165 ~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L 244 (271)
T d1nvra_ 165 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKIL 244 (271)
T ss_dssp CCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHS
T ss_pred eeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHc
Confidence 678999999998876665 57799999999999999999998631 00 00 7999999
Q ss_pred cCCCCCCCCccccC
Q 046589 716 SDNPIAKPGMLRVQ 729 (729)
Q Consensus 716 ~~~p~~Rp~~~~v~ 729 (729)
+.+|++|||++|++
T Consensus 245 ~~dP~~R~t~~eil 258 (271)
T d1nvra_ 245 VENPSARITIPDIK 258 (271)
T ss_dssp CSSTTTSCCHHHHT
T ss_pred CCChhHCcCHHHHh
Confidence 99999999999874
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.8e-24 Score=221.11 Aligned_cols=136 Identities=26% Similarity=0.425 Sum_probs=113.2
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
++|...+.||+|+||+||+|+. .+|+.||||.
T Consensus 8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm 87 (288)
T d1uu3a_ 8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 87 (288)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence 4577778899999999999997 5889999995
Q ss_pred ---------------------------------------------cccccceEecCCccEEEeecCCccccCCCCC-cce
Q 046589 625 ---------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKS-HIS 658 (729)
Q Consensus 625 ---------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~ 658 (729)
|+||+||++++++.+|++|||+|+....... ...
T Consensus 88 Ey~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~ 167 (288)
T d1uu3a_ 88 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA 167 (288)
T ss_dssp CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC--------
T ss_pred EccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccCCccccc
Confidence 9999999999999999999999998653222 223
Q ss_pred ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC---------------cc----hH--HHHhhcccC
Q 046589 659 TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK---------------FE----DK--DIVVGCVSD 717 (729)
Q Consensus 659 ~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~---------------~~----~~--~l~~~c~~~ 717 (729)
....||+.|+|||...+..++.++||||+||++|||+||+.||... +. ++ +++.+|++.
T Consensus 168 ~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~ 247 (288)
T d1uu3a_ 168 NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVL 247 (288)
T ss_dssp --CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCTTCCHHHHHHHHTTSCS
T ss_pred ccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHHcCCCCCCccCCHHHHHHHHHHccC
Confidence 3467899999999988888999999999999999999999998731 10 11 799999999
Q ss_pred CCCCCCCcccc
Q 046589 718 NPIAKPGMLRV 728 (729)
Q Consensus 718 ~p~~Rp~~~~v 728 (729)
+|++|||++|+
T Consensus 248 dP~~R~t~~e~ 258 (288)
T d1uu3a_ 248 DATKRLGCEEM 258 (288)
T ss_dssp SGGGSTTSGGG
T ss_pred CHhHCcCHHHH
Confidence 99999999986
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=7.7e-25 Score=226.20 Aligned_cols=105 Identities=24% Similarity=0.397 Sum_probs=84.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC-cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCC-CC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS-HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQP-TG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~-~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p-~~ 702 (729)
|+||+||++|.++++||+|||+|+....... ...+...++..|+|||......++.++|||||||++|||+||..| +.
T Consensus 165 DlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~ 244 (301)
T d1lufa_ 165 DLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYY 244 (301)
T ss_dssp CCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred EEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCC
Confidence 9999999999999999999999987643222 223345778899999998888999999999999999999999754 44
Q ss_pred CCcchH----------------------HHHhhcccCCCCCCCCccccC
Q 046589 703 PKFEDK----------------------DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~~~~----------------------~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.....+ +++..||+.+|++||||.||+
T Consensus 245 ~~~~~e~~~~v~~~~~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~ 293 (301)
T d1lufa_ 245 GMAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIH 293 (301)
T ss_dssp TSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 211110 899999999999999999873
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=1.8e-24 Score=222.85 Aligned_cols=105 Identities=25% Similarity=0.447 Sum_probs=76.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc----eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI----STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~----~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~ 699 (729)
|+||+|||++.++++||+|||+|+......... .....+|..|+|||......++.++|||||||++|||+| |+.
T Consensus 153 DlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~ 232 (299)
T d1jpaa_ 153 DLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGER 232 (299)
T ss_dssp CCCGGGEEECTTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred ccccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCC
Confidence 999999999999999999999998765322211 112456789999999888899999999999999999998 788
Q ss_pred CCCCCcc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 700 PTGPKFE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+..... + .+++..||+.+|++||||+||+
T Consensus 233 Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~ 284 (299)
T d1jpaa_ 233 PYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIV 284 (299)
T ss_dssp TTTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHH
Confidence 8762110 1 1799999999999999999874
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=3.8e-24 Score=220.95 Aligned_cols=100 Identities=25% Similarity=0.397 Sum_probs=84.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC---CCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR---ARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~---~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++.++.+||+|||+|+.... .....||+.|+|||.+. ...++.++|||||||++|||+||+.|+
T Consensus 140 DiKp~NILl~~~~~~Kl~DFG~a~~~~~-----~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf 214 (309)
T d1u5ra_ 140 DVKAGNILLSEPGLVKLGDFGSASIMAP-----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL 214 (309)
T ss_dssp CCSGGGEEEETTTEEEECCCTTCBSSSS-----BCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CCCcceEEECCCCCEEEeecccccccCC-----CCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCC
Confidence 9999999999999999999999987543 22457899999999764 356899999999999999999999998
Q ss_pred CCC---------------------cchH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPK---------------------FEDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~---------------------~~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... +.+. +++.+|++.+|++|||++|++
T Consensus 215 ~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell 265 (309)
T d1u5ra_ 215 FNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLL 265 (309)
T ss_dssp TTSCHHHHHHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred CCCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHCcCChhHCcCHHHHH
Confidence 621 1111 899999999999999999874
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.2e-24 Score=224.76 Aligned_cols=107 Identities=30% Similarity=0.522 Sum_probs=93.4
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
++|...+.||+|+||+||+|+. .+|+.||||.
T Consensus 6 d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmEy 85 (322)
T d1s9ja_ 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH 85 (322)
T ss_dssp GGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred cCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence 5677778899999999999997 4889999996
Q ss_pred --------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceec
Q 046589 625 --------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTD 660 (729)
Q Consensus 625 --------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~ 660 (729)
|+||+|||++.++.+||+|||+|+..... ....
T Consensus 86 ~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~---~~~~ 162 (322)
T d1s9ja_ 86 MDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS---MANS 162 (322)
T ss_dssp CTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH---TC--
T ss_pred CCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCC---cccc
Confidence 99999999999999999999999876431 1234
Q ss_pred ccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 661 VASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 661 ~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
..||++|+|||...+..++.++||||+||++|||+||+.||.
T Consensus 163 ~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~ 204 (322)
T d1s9ja_ 163 FVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIP 204 (322)
T ss_dssp -CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSS
T ss_pred ccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence 688999999999988899999999999999999999999985
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.4e-24 Score=219.98 Aligned_cols=104 Identities=25% Similarity=0.385 Sum_probs=86.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc--eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI--STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~--~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||+||+++.++.+||+|||+|+......... .....+|+.|+|||......++.++|||||||++|||+| |+.|+
T Consensus 134 DlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf 213 (285)
T d1u59a_ 134 DLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPY 213 (285)
T ss_dssp CCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred cCchhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCC
Confidence 999999999999999999999999865432211 123467889999998887889999999999999999998 89887
Q ss_pred CC-Ccc-------------------hH--HHHhhcccCCCCCCCCcccc
Q 046589 702 GP-KFE-------------------DK--DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 702 ~~-~~~-------------------~~--~l~~~c~~~~p~~Rp~~~~v 728 (729)
.. ... ++ +++..||+.+|++||||.+|
T Consensus 214 ~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i 262 (285)
T d1u59a_ 214 KKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTV 262 (285)
T ss_dssp TTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 62 110 01 89999999999999999886
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.9e-24 Score=223.29 Aligned_cols=105 Identities=27% Similarity=0.398 Sum_probs=80.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCC-CC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQP-TG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p-~~ 702 (729)
|+||+||+++.++++||+|||+|+........ ......||+.|+|||...+..++.++|||||||++|||+||..| +.
T Consensus 159 DlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~ 238 (299)
T d1ywna1 159 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 238 (299)
T ss_dssp CCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred cCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999876543322 22346788999999998888899999999999999999998654 43
Q ss_pred C-Ccc--------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFE--------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~--------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... ++ +++.+||+.+|++||||+||+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil 288 (299)
T d1ywna1 239 GVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELV 288 (299)
T ss_dssp TCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 2 111 01 799999999999999999874
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=3.7e-24 Score=218.88 Aligned_cols=104 Identities=22% Similarity=0.332 Sum_probs=84.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-----CCCCCchhhHHHHHHHHHHHHhCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-----ARKANERDNIYRFGVVLLELVIRKQ 699 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-----~~~~~~~~Dv~s~G~vl~el~tg~~ 699 (729)
|+||+||+++.++.+||+|||+|+..... ........||+.|+|||.+. ...++.++||||+||++|||+||+.
T Consensus 135 DiKp~NIll~~~~~~Kl~DFG~a~~~~~~-~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~ 213 (288)
T d2jfla1 135 DLKAGNILFTLDGDIKLADFGVSAKNTRT-IQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEP 213 (288)
T ss_dssp CCSGGGEEECTTSCEEECCCTTCEECHHH-HHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSC
T ss_pred ecChhheeECCCCCEEEEechhhhccCCC-cccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999765321 11123457899999999763 4567899999999999999999999
Q ss_pred CCCC-Ccc---------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 700 PTGP-KFE---------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 700 p~~~-~~~---------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
|+.. ... ++ +++.+||+.+|++|||++|++
T Consensus 214 Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell 267 (288)
T d2jfla1 214 PHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLL 267 (288)
T ss_dssp TTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred CCCCCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence 9863 100 01 799999999999999999874
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3.2e-24 Score=223.14 Aligned_cols=105 Identities=22% Similarity=0.348 Sum_probs=83.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++++||+|||+|+......... .....+|.+|+|||.+....++.++|||||||++|||+| |+.|+.
T Consensus 136 DlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~ 215 (317)
T d1xkka_ 136 DLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYD 215 (317)
T ss_dssp CCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred cchhhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCC
Confidence 999999999999999999999999875433222 234567899999998888889999999999999999999 666665
Q ss_pred C-Ccc-------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFE-------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~-------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... +. +++.+||+.+|++||||+||+
T Consensus 216 ~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil 264 (317)
T d1xkka_ 216 GIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 264 (317)
T ss_dssp TSCGGGHHHHHHHTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHH
Confidence 2 111 00 799999999999999999873
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4e-24 Score=223.09 Aligned_cols=105 Identities=20% Similarity=0.348 Sum_probs=87.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcc-eecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHI-STDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~-~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+||+++.++++||+|||+|+......... .....+|+.|+|||......++.++|||||||++|||+| |+.|+.
T Consensus 189 DlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~ 268 (325)
T d1rjba_ 189 DLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYP 268 (325)
T ss_dssp TCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred cCchhccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCC
Confidence 999999999999999999999998766433322 234567899999998888899999999999999999998 888876
Q ss_pred C-Ccc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 P-KFE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~-~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. ... + .+++..||+.+|++||||+||+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~ 318 (325)
T d1rjba_ 269 GIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLT 318 (325)
T ss_dssp TCCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 3 111 0 1899999999999999999874
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4.3e-24 Score=217.34 Aligned_cols=104 Identities=25% Similarity=0.407 Sum_probs=85.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce--ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS--TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~--~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||+||+++.++.+|++|||+|+.......... ....+|+.|+|||......++.++|||||||++|||+| |+.|+
T Consensus 132 DlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf 211 (277)
T d1xbba_ 132 DLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPY 211 (277)
T ss_dssp CCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred CCcchhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCC
Confidence 9999999999999999999999998654333222 23567889999998888889999999999999999998 88887
Q ss_pred CC-C-------------------cchH--HHHhhcccCCCCCCCCcccc
Q 046589 702 GP-K-------------------FEDK--DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 702 ~~-~-------------------~~~~--~l~~~c~~~~p~~Rp~~~~v 728 (729)
.. . +.++ +++..||+.+|++||||++|
T Consensus 212 ~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i 260 (277)
T d1xbba_ 212 RGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAV 260 (277)
T ss_dssp TTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred CCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHH
Confidence 62 1 0011 89999999999999999986
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.7e-23 Score=211.86 Aligned_cols=101 Identities=26% Similarity=0.452 Sum_probs=84.0
Q ss_pred cccccceEec-CCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLN-EDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~-~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++ .++.+||+|||+|+.... .......||+.|+|||... ..++.++||||+||++|||+||+.||..
T Consensus 139 DiKp~NILl~~~~~~~Kl~DFGla~~~~~---~~~~~~~GT~~Y~aPE~~~-~~~~~~~DIwSlGvilyel~~g~~Pf~~ 214 (270)
T d1t4ha_ 139 DLKCDNIFITGPTGSVKIGDLGLATLKRA---SFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSE 214 (270)
T ss_dssp CCCGGGEEESSTTSCEEECCTTGGGGCCT---TSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred CcChhhceeeCCCCCEEEeecCcceeccC---CccCCcccCccccCHHHhC-CCCCCcCchhhHHHHHHHHHHCCCCCCC
Confidence 9999999997 578999999999987543 2233567899999999875 4689999999999999999999999862
Q ss_pred Ccc----------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KFE----------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~----------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... + .+++.+|++.+|++|||++|++
T Consensus 215 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell 264 (270)
T d1t4ha_ 215 CQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL 264 (270)
T ss_dssp CSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred cccHHHHHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhHCcCHHHHh
Confidence 100 0 1899999999999999999873
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=5e-24 Score=220.56 Aligned_cols=105 Identities=29% Similarity=0.507 Sum_probs=86.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc---ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH---ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~---~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+|||+++++.+||+|||+++........ ......+|..|+|||......++.++|||||||++|||+||+.|+
T Consensus 155 DLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~ 234 (311)
T d1r0pa_ 155 DLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPP 234 (311)
T ss_dssp CCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CccHHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCC
Confidence 99999999999999999999999876532221 122456788999999988889999999999999999999988887
Q ss_pred CCCcc---------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPKFE---------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~~---------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..... ++ +++.+||..+|++||+|+||+
T Consensus 235 ~~~~~~~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~ 285 (311)
T d1r0pa_ 235 YPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELV 285 (311)
T ss_dssp CC------CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCCCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHH
Confidence 63111 01 899999999999999999874
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.7e-22 Score=206.88 Aligned_cols=226 Identities=21% Similarity=0.212 Sum_probs=161.5
Q ss_pred cEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEcc-C
Q 046589 132 RVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS-G 210 (729)
Q Consensus 132 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls-~ 210 (729)
.+++.++++++.++. .+. +.+++|+|++|+|+...+..|.++++|++|++++|++....+..+..+..++.++.. .
T Consensus 14 ~~v~c~~~~L~~iP~-~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~ 90 (284)
T d1ozna_ 14 VTTSCPQQGLQAVPV-GIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (284)
T ss_dssp CEEECCSSCCSSCCT-TCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCCCCCCccCC-CCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence 345667777776532 221 467888888888886666678888888888888888887777778888888888764 5
Q ss_pred CCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccccc
Q 046589 211 NGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTGSI 290 (729)
Q Consensus 211 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~ 290 (729)
|.++...|..|.++++|++|++++|.+. .++...+...++|+.+++++|.+++..+..|..+++|+.++++.|++++
T Consensus 91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-- 167 (284)
T d1ozna_ 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-- 167 (284)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--
T ss_pred cccccccchhhcccccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc--
Confidence 5566566777888888888888888876 4555667777888888888888876555666666666666666555542
Q ss_pred cccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCC
Q 046589 291 QSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGS 370 (729)
Q Consensus 291 ~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 370 (729)
..+.++..+++|+.+++++|++.+..|..|..+++|++|++++|++.+.
T Consensus 168 -------------------------------l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~ 216 (284)
T d1ozna_ 168 -------------------------------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216 (284)
T ss_dssp -------------------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred -------------------------------cchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccc
Confidence 2234455566777777777777777777777777777777777777776
Q ss_pred CcccccCCCCCcEEEcCCCCCCCC
Q 046589 371 IPRELNDSESLVEINLDGNMLSGT 394 (729)
Q Consensus 371 ~p~~~~~l~~L~~L~L~~N~l~~~ 394 (729)
.+..|..+++|++|++++|.+...
T Consensus 217 ~~~~~~~~~~L~~L~l~~N~l~C~ 240 (284)
T d1ozna_ 217 PTEALAPLRALQYLRLNDNPWVCD 240 (284)
T ss_dssp CHHHHTTCTTCCEEECCSSCEECS
T ss_pred cccccccccccCEEEecCCCCCCC
Confidence 666777777777777777776543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.3e-22 Score=207.66 Aligned_cols=223 Identities=22% Similarity=0.241 Sum_probs=182.3
Q ss_pred EEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEee-ccC
Q 046589 110 QVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLC-SNS 188 (729)
Q Consensus 110 l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls-~N~ 188 (729)
.+.++.+++ .+|..+. +.+++|+|++|.|+++++.+|.++++|++|++++|++....+..+..+..++.++.. .|.
T Consensus 16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 345556666 5665543 578999999999999988899999999999999999998888888999999998765 566
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCc
Q 046589 189 FTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPP 268 (729)
Q Consensus 189 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 268 (729)
++...|..|.++++|++|++++|.+....+..+....+|+.+++++|.++ .++...|..+++|++|++++|++++..+.
T Consensus 93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~~~ 171 (284)
T d1ozna_ 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (284)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccchh
Confidence 77777888999999999999999998777888899999999999999998 67668899999999999999999988888
Q ss_pred cccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCC
Q 046589 269 EISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIP 348 (729)
Q Consensus 269 ~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 348 (729)
.+..+++|+.++++.|++++.. |.++..+++|++|++++|.+.+..+
T Consensus 172 ~f~~l~~L~~l~l~~N~l~~i~---------------------------------~~~f~~l~~L~~L~l~~N~i~~~~~ 218 (284)
T d1ozna_ 172 AFRGLHSLDRLLLHQNRVAHVH---------------------------------PHAFRDLGRLMTLYLFANNLSALPT 218 (284)
T ss_dssp TTTTCTTCCEEECCSSCCCEEC---------------------------------TTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred hhccccccchhhhhhccccccC---------------------------------hhHhhhhhhcccccccccccccccc
Confidence 9999999999888888776543 3445555666667777777666665
Q ss_pred CCCcCCCCCcEEEecCCCCCC
Q 046589 349 LEVGNCSMLKYIRLSNNKLSG 369 (729)
Q Consensus 349 ~~l~~l~~L~~L~Ls~N~l~~ 369 (729)
..|..+++|++|++++|.+..
T Consensus 219 ~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 219 EALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp HHHTTCTTCCEEECCSSCEEC
T ss_pred cccccccccCEEEecCCCCCC
Confidence 666666777777777776654
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=1.1e-23 Score=217.36 Aligned_cols=135 Identities=22% Similarity=0.324 Sum_probs=102.3
Q ss_pred cccccccCCCCCCcceEEEeecC-CCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~----------------------------------------------- 624 (729)
+.|...+.||+|+||+||+|+.. +|+.||||.
T Consensus 9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~ 88 (307)
T d1a06a_ 9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQL 88 (307)
T ss_dssp GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 34666778999999999999974 788999996
Q ss_pred -------------------------------------------cccccceEec---CCccEEEeecCCccccCCCCCcce
Q 046589 625 -------------------------------------------DIKASNILLN---EDFDAKVLDFGLARLISDCKSHIS 658 (729)
Q Consensus 625 -------------------------------------------dlk~~nill~---~~~~~kl~dfgl~~~~~~~~~~~~ 658 (729)
|+||+||++. .++.+|++|||+|+..... ...
T Consensus 89 ~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~--~~~ 166 (307)
T d1a06a_ 89 VSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPG--SVL 166 (307)
T ss_dssp CCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC--------------
T ss_pred cCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCC--Cee
Confidence 9999999995 5789999999999876432 223
Q ss_pred ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcc-----------------------h--HHHHhh
Q 046589 659 TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFE-----------------------D--KDIVVG 713 (729)
Q Consensus 659 ~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~-----------------------~--~~l~~~ 713 (729)
....||+.|+|||...+..++.++||||+||++|||+||+.||..... + .+++..
T Consensus 167 ~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~ 246 (307)
T d1a06a_ 167 STACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRH 246 (307)
T ss_dssp ------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHH
T ss_pred eeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHH
Confidence 346789999999998888899999999999999999999999863110 1 179999
Q ss_pred cccCCCCCCCCccccC
Q 046589 714 CVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 714 c~~~~p~~Rp~~~~v~ 729 (729)
|++.+|++|||++|++
T Consensus 247 ~L~~dP~~R~s~~eil 262 (307)
T d1a06a_ 247 LMEKDPEKRFTCEQAL 262 (307)
T ss_dssp HSCSSGGGSCCHHHHH
T ss_pred HccCCHhHCcCHHHHh
Confidence 9999999999999863
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.5e-24 Score=219.08 Aligned_cols=105 Identities=25% Similarity=0.396 Sum_probs=82.2
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc---ceecccccccccCccccCCC------CCCchhhHHHHHHHHHHHH
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH---ISTDVASAISYVPPEYGRAR------KANERDNIYRFGVVLLELV 695 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~---~~~~~~~~~~y~ape~~~~~------~~~~~~Dv~s~G~vl~el~ 695 (729)
|+||+||+++.++.+||+|||+++........ ......||++|+|||++... .++.++|||||||++|||+
T Consensus 133 DlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~ 212 (303)
T d1vjya_ 133 DLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIA 212 (303)
T ss_dssp CCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccceEEcCCCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHh
Confidence 99999999999999999999999987543222 12346789999999986543 2578899999999999999
Q ss_pred hCCCCCCC------------------------------------Ccch-------HHHHhhcccCCCCCCCCccccC
Q 046589 696 IRKQPTGP------------------------------------KFED-------KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 696 tg~~p~~~------------------------------------~~~~-------~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
||+.|+.. .+.. .+++.+||+.+|++||||.||+
T Consensus 213 tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~ 289 (303)
T d1vjya_ 213 RRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIK 289 (303)
T ss_dssp HTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHH
T ss_pred hCCCCCCcccccccchhhcccccchHHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHH
Confidence 99876531 0000 0689999999999999999873
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=7.4e-24 Score=215.58 Aligned_cols=105 Identities=24% Similarity=0.434 Sum_probs=75.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+|+..............+|+.|+|||......++.++|||||||++|||+| |+.|+..
T Consensus 133 DlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~ 212 (273)
T d1mp8a_ 133 DIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG 212 (273)
T ss_dssp CCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred ccchhheeecCCCcEEEccchhheeccCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCC
Confidence 999999999999999999999998765433333345577889999999888899999999999999999998 7777652
Q ss_pred -Ccc-------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 704 -KFE-------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~~-------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... +. +++..||+.+|++||||+||+
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~ 260 (273)
T d1mp8a_ 213 VKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELK 260 (273)
T ss_dssp CCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHH
Confidence 111 11 899999999999999999873
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=8.5e-24 Score=218.85 Aligned_cols=105 Identities=24% Similarity=0.409 Sum_probs=85.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+|||+|+++++||+|||+|+........ ......+++.|+|||......++.++|||||||++|||+||+.|+..
T Consensus 158 Dlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~ 237 (308)
T d1p4oa_ 158 DLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQ 237 (308)
T ss_dssp CCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTT
T ss_pred eEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999876532222 12234678899999998888899999999999999999999755432
Q ss_pred Ccch---------------------H--HHHhhcccCCCCCCCCccccC
Q 046589 704 KFED---------------------K--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~~~---------------------~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.... . +++.+||+.+|++||||++|+
T Consensus 238 ~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il 286 (308)
T d1p4oa_ 238 GLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEII 286 (308)
T ss_dssp TSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHhCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 1110 0 899999999999999999874
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=6.7e-23 Score=213.88 Aligned_cols=131 Identities=25% Similarity=0.369 Sum_probs=112.1
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
++|...+.||+|+||.||+|+. .+|+.||||.
T Consensus 5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~ 84 (337)
T d1o6la_ 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccce
Confidence 4567778899999999999997 5899999996
Q ss_pred ---------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCccee
Q 046589 625 ---------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST 659 (729)
Q Consensus 625 ---------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~ 659 (729)
|+||+||+++.++.+||+|||+|+...... ....
T Consensus 85 ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~-~~~~ 163 (337)
T d1o6la_ 85 EYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG-ATMK 163 (337)
T ss_dssp ECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT-CCBC
T ss_pred eccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccccccCC-cccc
Confidence 999999999999999999999998754322 2234
Q ss_pred cccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcc-------------------h--HHHHhhcccCC
Q 046589 660 DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFE-------------------D--KDIVVGCVSDN 718 (729)
Q Consensus 660 ~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~-------------------~--~~l~~~c~~~~ 718 (729)
...||++|+|||...+..++.++||||+||++|||+||+.|+...-. + .+++..|++.+
T Consensus 164 ~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~~L~~d 243 (337)
T d1o6la_ 164 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKD 243 (337)
T ss_dssp CCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSS
T ss_pred cceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHhhccCC
Confidence 56789999999999889999999999999999999999999873111 1 17999999999
Q ss_pred CCCCCC
Q 046589 719 PIAKPG 724 (729)
Q Consensus 719 p~~Rp~ 724 (729)
|++||+
T Consensus 244 P~~R~~ 249 (337)
T d1o6la_ 244 PKQRLG 249 (337)
T ss_dssp TTTSTT
T ss_pred chhhcc
Confidence 999996
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.3e-23 Score=213.21 Aligned_cols=105 Identities=24% Similarity=0.414 Sum_probs=84.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce--ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS--TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~--~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~ 701 (729)
|+||+||+++.++.+|++|||+++.......... ....++.+|+|||......++.++|||||||++|||+| |+.|+
T Consensus 136 Dikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf 215 (273)
T d1u46a_ 136 DLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPW 215 (273)
T ss_dssp CCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred eecHHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCC
Confidence 9999999999999999999999998754333221 23567889999998888889999999999999999998 88887
Q ss_pred CCC-cc--------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 702 GPK-FE--------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~-~~--------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... .. .. +++..||..+|++||||++|+
T Consensus 216 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~ 266 (273)
T d1u46a_ 216 IGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALR 266 (273)
T ss_dssp TTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCcCHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 521 00 11 799999999999999999873
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4.5e-23 Score=214.03 Aligned_cols=103 Identities=27% Similarity=0.426 Sum_probs=87.0
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+|++|||+|+...... .......||+.|+|||...+..++.++||||+||++|||+||+.||...
T Consensus 128 Dikp~NiL~~~~~~~kl~DFG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~ 206 (320)
T d1xjda_ 128 DLKLDNILLDKDGHIKIADFGMCKENMLGD-AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ 206 (320)
T ss_dssp CCCGGGEEECTTSCEEECCCTTCBCCCCTT-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cCcccceeecCCCceeccccchhhhccccc-ccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCC
Confidence 999999999999999999999998654322 2233467899999999998889999999999999999999999998731
Q ss_pred cc-------------------hH--HHHhhcccCCCCCCCCcc-cc
Q 046589 705 FE-------------------DK--DIVVGCVSDNPIAKPGML-RV 728 (729)
Q Consensus 705 ~~-------------------~~--~l~~~c~~~~p~~Rp~~~-~v 728 (729)
-. ++ +++.+|+..+|++|||++ ++
T Consensus 207 ~~~~~~~~i~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l 252 (320)
T d1xjda_ 207 DEEELFHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDI 252 (320)
T ss_dssp SHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCG
T ss_pred CHHHHHHHHHcCCCCCCccCCHHHHHHHHHhcccCCCCCcCHHHHH
Confidence 11 11 799999999999999996 55
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.87 E-value=4.4e-23 Score=217.96 Aligned_cols=98 Identities=23% Similarity=0.373 Sum_probs=82.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+|||++.++.+||+|||+|+...... .....||+.|+|||... +..++.++||||+||++|||+||+.||..
T Consensus 132 DlKP~NILl~~~g~iKl~DFGla~~~~~~~---~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~ 208 (364)
T d1omwa3 132 DLKPANILLDEHGHVRISDLGLACDFSKKK---PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQ 208 (364)
T ss_dssp CCSGGGEEECSSSCEEECCCTTCEECSSSC---CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCS
T ss_pred eeccceeEEcCCCcEEEeeeceeeecCCCc---ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999998765422 23457899999999875 45689999999999999999999999863
Q ss_pred -Ccc---------------------hH--HHHhhcccCCCCCCCCc
Q 046589 704 -KFE---------------------DK--DIVVGCVSDNPIAKPGM 725 (729)
Q Consensus 704 -~~~---------------------~~--~l~~~c~~~~p~~Rp~~ 725 (729)
... ++ +++.+|++.+|++|||+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~ 254 (364)
T d1omwa3 209 HKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGC 254 (364)
T ss_dssp SCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTT
T ss_pred CCHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHHHcccCHHHhCCC
Confidence 100 11 79999999999999994
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=5.1e-23 Score=213.28 Aligned_cols=100 Identities=23% Similarity=0.438 Sum_probs=85.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+||+|||+|+..... .....||+.|+|||...+..++.++||||+||++|||+||+.||...
T Consensus 129 DiKp~NILl~~~g~vkL~DFG~a~~~~~~----~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~ 204 (316)
T d1fota_ 129 DLKPENILLDKNGHIKITDFGFAKYVPDV----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS 204 (316)
T ss_dssp CCCGGGEEECTTSCEEECCCSSCEECSSC----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred ccCchheeEcCCCCEEEecCccceEeccc----cccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCc
Confidence 99999999999999999999999886532 23467899999999988888999999999999999999999998631
Q ss_pred cc-------------------hH--HHHhhcccCCCCCCC-----Ccccc
Q 046589 705 FE-------------------DK--DIVVGCVSDNPIAKP-----GMLRV 728 (729)
Q Consensus 705 ~~-------------------~~--~l~~~c~~~~p~~Rp-----~~~~v 728 (729)
-. ++ +++.+|+..+|.+|| |++++
T Consensus 205 ~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~i 254 (316)
T d1fota_ 205 NTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDV 254 (316)
T ss_dssp SHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHH
T ss_pred CHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHhccccchhhHHHH
Confidence 11 11 799999999999996 77665
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=6.5e-23 Score=210.70 Aligned_cols=102 Identities=24% Similarity=0.333 Sum_probs=85.4
Q ss_pred cccccceEecCCc----cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDF----DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~----~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++ .+|++|||+|+..... .......++..|+|||......++.++||||+||++|||+||+.|
T Consensus 138 DiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~--~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~P 215 (293)
T d1jksa_ 138 DLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFG--NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 215 (293)
T ss_dssp CCSGGGEEESCSSSSSCCEEECCCTTCEECTTS--CBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred ccccceEEEecCCCcccceEecchhhhhhcCCC--ccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCC
Confidence 9999999998766 5999999999876532 223345778899999998888899999999999999999999999
Q ss_pred CCCCc---------------ch----------HHHHhhcccCCCCCCCCcccc
Q 046589 701 TGPKF---------------ED----------KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 701 ~~~~~---------------~~----------~~l~~~c~~~~p~~Rp~~~~v 728 (729)
+...- .. .+++.+|+..+|++|||++|+
T Consensus 216 f~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~ei 268 (293)
T d1jksa_ 216 FLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDS 268 (293)
T ss_dssp SCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 86311 10 079999999999999999986
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=8.2e-23 Score=214.68 Aligned_cols=132 Identities=20% Similarity=0.331 Sum_probs=112.8
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
+.|...+.||+|+||+||+|+. .+|+.||||.
T Consensus 41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~ 120 (350)
T d1rdqe_ 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence 4566777899999999999987 4899999995
Q ss_pred ---------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCccee
Q 046589 625 ---------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST 659 (729)
Q Consensus 625 ---------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~ 659 (729)
|+||+|||++.++.+||+|||+|+..... ..
T Consensus 121 e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~----~~ 196 (350)
T d1rdqe_ 121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR----TW 196 (350)
T ss_dssp ECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC----BC
T ss_pred ccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeecccc----cc
Confidence 99999999999999999999999886532 23
Q ss_pred cccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCc-------------------chH--HHHhhcccCC
Q 046589 660 DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKF-------------------EDK--DIVVGCVSDN 718 (729)
Q Consensus 660 ~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~-------------------~~~--~l~~~c~~~~ 718 (729)
...||+.|+|||...+..++.++||||+||++|||+||+.||...- .++ +++..|+..+
T Consensus 197 ~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~d 276 (350)
T d1rdqe_ 197 TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVD 276 (350)
T ss_dssp CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSCSC
T ss_pred cccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHhhhC
Confidence 4578899999999888889999999999999999999999987311 011 8999999999
Q ss_pred CCCCC-----Ccccc
Q 046589 719 PIAKP-----GMLRV 728 (729)
Q Consensus 719 p~~Rp-----~~~~v 728 (729)
|.+|+ |++++
T Consensus 277 P~kR~~~~r~t~~el 291 (350)
T d1rdqe_ 277 LTKRFGNLKNGVNDI 291 (350)
T ss_dssp TTTCTTSSTTTTHHH
T ss_pred HHhccccccccHHHH
Confidence 99994 77765
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=99.86 E-value=4.7e-23 Score=216.37 Aligned_cols=134 Identities=21% Similarity=0.378 Sum_probs=113.2
Q ss_pred ccccccCCCCCCcceEEEeec-CCCCceeeec------------------------------------------------
Q 046589 594 KFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 594 ~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~------------------------------------------------ 624 (729)
+|.....||+|+||.||+|+. .+|+.||||.
T Consensus 27 ~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~ 106 (350)
T d1koaa2 27 HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMS 106 (350)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCCC
T ss_pred CeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCC
Confidence 466667899999999999987 5889999996
Q ss_pred ------------------------------------------cccccceEec--CCccEEEeecCCccccCCCCCcceec
Q 046589 625 ------------------------------------------DIKASNILLN--EDFDAKVLDFGLARLISDCKSHISTD 660 (729)
Q Consensus 625 ------------------------------------------dlk~~nill~--~~~~~kl~dfgl~~~~~~~~~~~~~~ 660 (729)
|+||+||+++ .++.+||+|||+|+..... .....
T Consensus 107 gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~--~~~~~ 184 (350)
T d1koaa2 107 GGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK--QSVKV 184 (350)
T ss_dssp SCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTT--SCEEE
T ss_pred CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheecccc--cccce
Confidence 9999999996 4578999999999886532 23345
Q ss_pred ccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCcc-----------------------h--HHHHhhcc
Q 046589 661 VASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPKFE-----------------------D--KDIVVGCV 715 (729)
Q Consensus 661 ~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~~~-----------------------~--~~l~~~c~ 715 (729)
..+|+.|+|||...+..++.++||||+||++|||+||+.|+...-. + .+++.+|+
T Consensus 185 ~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L 264 (350)
T d1koaa2 185 TTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLL 264 (350)
T ss_dssp ECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHC
T ss_pred ecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHc
Confidence 6789999999998888899999999999999999999999863100 0 17999999
Q ss_pred cCCCCCCCCccccC
Q 046589 716 SDNPIAKPGMLRVQ 729 (729)
Q Consensus 716 ~~~p~~Rp~~~~v~ 729 (729)
..+|++|||++|++
T Consensus 265 ~~dP~~R~t~~eil 278 (350)
T d1koaa2 265 LADPNTRMTIHQAL 278 (350)
T ss_dssp CSSGGGSCCHHHHH
T ss_pred cCChhHCcCHHHHh
Confidence 99999999999863
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=99.86 E-value=7e-23 Score=215.24 Aligned_cols=134 Identities=22% Similarity=0.367 Sum_probs=114.3
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
+.|...+.||+|+||+||+|+. .+|+.||||.
T Consensus 29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~ 108 (352)
T d1koba_ 29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL 108 (352)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence 3566777899999999999987 5899999996
Q ss_pred -------------------------------------------cccccceEec--CCccEEEeecCCccccCCCCCccee
Q 046589 625 -------------------------------------------DIKASNILLN--EDFDAKVLDFGLARLISDCKSHIST 659 (729)
Q Consensus 625 -------------------------------------------dlk~~nill~--~~~~~kl~dfgl~~~~~~~~~~~~~ 659 (729)
|+||+|||++ .++.+||+|||+|+..... ....
T Consensus 109 ~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~--~~~~ 186 (352)
T d1koba_ 109 SGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD--EIVK 186 (352)
T ss_dssp CCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT--SCEE
T ss_pred CCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCC--Ccee
Confidence 9999999998 5689999999999887642 2334
Q ss_pred cccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC---------------cc--------h--HHHHhhc
Q 046589 660 DVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK---------------FE--------D--KDIVVGC 714 (729)
Q Consensus 660 ~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~---------------~~--------~--~~l~~~c 714 (729)
...++..|+|||...+..++.++||||+||++|||+||+.||... +. + .+++..|
T Consensus 187 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~ 266 (352)
T d1koba_ 187 VTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNL 266 (352)
T ss_dssp EECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTT
T ss_pred eccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHH
Confidence 567889999999998889999999999999999999999998631 00 1 1799999
Q ss_pred ccCCCCCCCCcccc
Q 046589 715 VSDNPIAKPGMLRV 728 (729)
Q Consensus 715 ~~~~p~~Rp~~~~v 728 (729)
++.+|++|||++|+
T Consensus 267 L~~dp~~R~s~~ei 280 (352)
T d1koba_ 267 LQKEPRKRLTVHDA 280 (352)
T ss_dssp SCSSGGGSCCHHHH
T ss_pred ccCChhHCcCHHHH
Confidence 99999999999986
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.8e-23 Score=207.53 Aligned_cols=101 Identities=26% Similarity=0.489 Sum_probs=77.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++..... .....++..|+|||+..+..++.++|||||||++|||+| |+.|+..
T Consensus 128 dlkp~Nil~~~~~~~kl~dfg~s~~~~~~----~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~ 203 (262)
T d1byga_ 128 DLAARNVLVSEDNVAKVSDFGLTKEASST----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPR 203 (262)
T ss_dssp CCSGGGEEECTTSCEEECCCCC----------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTT
T ss_pred ccchHhheecCCCCEeecccccceecCCC----CccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCC
Confidence 99999999999999999999999875432 223456789999999888899999999999999999999 5655542
Q ss_pred -Ccc-------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 704 -KFE-------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 -~~~-------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... +. +++.+||+.+|++||||++|+
T Consensus 204 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~ 251 (262)
T d1byga_ 204 IPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLR 251 (262)
T ss_dssp SCGGGHHHHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHH
Confidence 111 01 899999999999999999873
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.6e-23 Score=209.51 Aligned_cols=102 Identities=27% Similarity=0.540 Sum_probs=83.6
Q ss_pred cccccceEecC-CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCC-CchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNE-DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKA-NERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~-~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~-~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++. ++.+|++|||+|+.... ...+...||..|+|||......+ +.++||||+||++|||+||+.|+.
T Consensus 135 DiKp~NIll~~~~~~vkl~DFG~a~~~~~---~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~ 211 (273)
T d1xwsa_ 135 DIKDENILIDLNRGELKLIDFGSGALLKD---TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFE 211 (273)
T ss_dssp CCSGGGEEEETTTTEEEECCCTTCEECCS---SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred cCcccceEEecCCCeEEECccccceeccc---ccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCC
Confidence 99999999985 47999999999987543 22345678999999998766554 567899999999999999999987
Q ss_pred CC---------c----chH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PK---------F----EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~---------~----~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. + .++ +++.+|++.+|++|||++|++
T Consensus 212 ~~~~i~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil 253 (273)
T d1xwsa_ 212 HDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQ 253 (273)
T ss_dssp SHHHHHHCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CchHHhhcccCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHh
Confidence 31 1 111 899999999999999999863
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.3e-22 Score=210.09 Aligned_cols=102 Identities=26% Similarity=0.399 Sum_probs=86.8
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+|||++.++.+|++|||+++.... ........||+.|+|||......++.++||||+||++|||+||+.||...
T Consensus 141 DiKp~NILi~~~~~~kl~dfg~~~~~~~--~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~ 218 (305)
T d1blxa_ 141 DLKPQNILVTSSGQIKLADFGLARIYSF--QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS 218 (305)
T ss_dssp CCCGGGEEECTTCCEEECSCCSCCCCCG--GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred CCCccEEEEcCCCCeeecchhhhhhhcc--cccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCC
Confidence 9999999999999999999999887542 22334567899999999988889999999999999999999999998521
Q ss_pred --------------------cc--------------------------h--HHHHhhcccCCCCCCCCcccc
Q 046589 705 --------------------FE--------------------------D--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 705 --------------------~~--------------------------~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
|. + .+++.+|++.+|++|||++|+
T Consensus 219 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~ 290 (305)
T d1blxa_ 219 SDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 290 (305)
T ss_dssp SHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHH
Confidence 10 0 169999999999999999986
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.4e-22 Score=209.03 Aligned_cols=104 Identities=27% Similarity=0.344 Sum_probs=84.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+|+...... .......+|..|+|||.... ..++.++||||+||++|||+||+.|+..
T Consensus 125 DiKp~NIli~~~~~~KL~DFG~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~ 203 (299)
T d1ua2a_ 125 DLKPNNLLLDENGVLKLADFGLAKSFGSPN-RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPG 203 (299)
T ss_dssp CCCGGGEEECTTCCEEECCCGGGSTTTSCC-CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred cCCcceEEecCCCccccccCccccccCCCc-ccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCC
Confidence 999999999999999999999998765322 22234578899999997654 5679999999999999999999988742
Q ss_pred C--------------------cc---------------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 704 K--------------------FE---------------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~--------------------~~---------------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. |. ++ +++..|++.+|++|||++|++
T Consensus 204 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L 278 (299)
T d1ua2a_ 204 DSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQAL 278 (299)
T ss_dssp SSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHH
T ss_pred CCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHh
Confidence 1 00 00 689999999999999999863
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=7.9e-21 Score=192.29 Aligned_cols=173 Identities=28% Similarity=0.291 Sum_probs=119.6
Q ss_pred cEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeec
Q 046589 107 VVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCS 186 (729)
Q Consensus 107 ~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 186 (729)
....+.++++++ .+|+.+. +++++|||++|.++++++.+|.++++|++|+|++|+|+ .+| .++.+++|++|+|++
T Consensus 12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~ 86 (266)
T d1p9ag_ 12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSH 86 (266)
T ss_dssp CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCS
T ss_pred CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccc
Confidence 344577777777 4665443 46788888888888777777888888888888888876 343 356777888888888
Q ss_pred cCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccC
Q 046589 187 NSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNI 266 (729)
Q Consensus 187 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 266 (729)
|+++ ..+..+.++++|++|++++|.+....+..+..+.++++|++++|.++ .++...+..+++|+.+++++|++++..
T Consensus 87 N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~ 164 (266)
T d1p9ag_ 87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELP 164 (266)
T ss_dssp SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred cccc-ccccccccccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhcccccccccccC
Confidence 8876 45667777788888888888777666667777777777777777776 555566667777777777777766554
Q ss_pred CccccCCCcCCeeccccccc
Q 046589 267 PPEISHLKKLSDHYLGINQF 286 (729)
Q Consensus 267 p~~l~~l~~L~~l~l~~n~l 286 (729)
+..+..+++|+.|++++|++
T Consensus 165 ~~~~~~l~~L~~L~Ls~N~L 184 (266)
T d1p9ag_ 165 AGLLNGLENLDTLLLQENSL 184 (266)
T ss_dssp TTTTTTCTTCCEEECCSSCC
T ss_pred ccccccccccceeecccCCC
Confidence 44455555554444444443
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=6.8e-23 Score=212.18 Aligned_cols=103 Identities=24% Similarity=0.383 Sum_probs=82.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGPK 704 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~~ 704 (729)
|+||+||+++.++.+||+|||+|+...... ......+|..|+|||......++.++|||||||++|||+||..|+...
T Consensus 152 Dlkp~NIL~~~~~~~kl~DfG~a~~~~~~~--~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~ 229 (309)
T d1fvra_ 152 DLAARNILVGENYVAKIADFGLSRGQEVYV--KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG 229 (309)
T ss_dssp CCSGGGEEECGGGCEEECCTTCEESSCEEC--CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred ccccceEEEcCCCceEEccccccccccccc--cccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCC
Confidence 999999999999999999999998754321 122346788999999988888999999999999999999987653311
Q ss_pred cc---------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 705 FE---------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 705 ~~---------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.. ++ +++.+||+.+|++||||+||+
T Consensus 230 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil 277 (309)
T d1fvra_ 230 MTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL 277 (309)
T ss_dssp CCHHHHHHHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCHHHHHHHHHhcCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 10 11 899999999999999999874
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.1e-22 Score=207.42 Aligned_cols=105 Identities=26% Similarity=0.376 Sum_probs=86.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc-ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHh-CCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH-ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVI-RKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~-~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~t-g~~p~~ 702 (729)
|+||+|||++.++.+|++|||+++........ ......+++.|+|||...+..++.++|||||||++|||+| |+.|+.
T Consensus 160 DiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~ 239 (299)
T d1fgka_ 160 DLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP 239 (299)
T ss_dssp CCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred eecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCC
Confidence 99999999999999999999999987643322 2234577889999999888899999999999999999998 566654
Q ss_pred CCcc--------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 703 PKFE--------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~~--------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.... + .+++.+||+.+|++||||+||+
T Consensus 240 ~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil 288 (299)
T d1fgka_ 240 GVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLV 288 (299)
T ss_dssp TCCHHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHccCCHhHCcCHHHHH
Confidence 2100 1 1899999999999999999874
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.6e-22 Score=209.65 Aligned_cols=105 Identities=25% Similarity=0.422 Sum_probs=86.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcce-ecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHIS-TDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~-~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+++.......... +...+|+.|+|||......++.++|||||||++|||+|++.|+..
T Consensus 170 DLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~ 249 (311)
T d1t46a_ 170 DLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYP 249 (311)
T ss_dssp CCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred ccccccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999998654333322 346788999999998888899999999999999999996666442
Q ss_pred --Ccc--------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 704 --KFE--------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 --~~~--------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
... +. +++.+||+.+|++||||++|+
T Consensus 250 ~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il 299 (311)
T d1t46a_ 250 GMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIV 299 (311)
T ss_dssp TCCSSHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 110 11 799999999999999999874
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.85 E-value=3.5e-22 Score=203.56 Aligned_cols=104 Identities=27% Similarity=0.509 Sum_probs=79.3
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCC--cceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKS--HISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~--~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++..+++|||.++....... .......||+.|+|||...+..++.++||||+||++|||+||+.||.
T Consensus 136 DiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~ 215 (277)
T d1o6ya_ 136 DVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT 215 (277)
T ss_dssp CCSGGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred cccCcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCC
Confidence 9999999999999999999999876543221 12234678999999999888889999999999999999999999986
Q ss_pred CCc-----------------------ch--HHHHhhcccCCCCCCC-Ccccc
Q 046589 703 PKF-----------------------ED--KDIVVGCVSDNPIAKP-GMLRV 728 (729)
Q Consensus 703 ~~~-----------------------~~--~~l~~~c~~~~p~~Rp-~~~~v 728 (729)
..- .+ .+++.+|++.+|++|| |++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l 267 (277)
T d1o6ya_ 216 GDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEM 267 (277)
T ss_dssp CSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHH
T ss_pred CcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCHhHHHHH
Confidence 310 01 1799999999999999 77765
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=3.6e-22 Score=208.60 Aligned_cols=102 Identities=22% Similarity=0.344 Sum_probs=85.4
Q ss_pred cccccceEecC---CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNE---DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~---~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+||+++. .+.+|++|||+|+...... ......||++|+|||......++.++||||+||++|||+||+.||
T Consensus 136 DiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf 213 (335)
T d2ozaa1 136 DVKPENLLYTSKRPNAILKLTDFGFAKETTSHN--SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPF 213 (335)
T ss_dssp CCSGGGEEESCSSTTCCEEECCCTTCEECCCCC--CCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSC
T ss_pred cccccccccccccccccccccccceeeeccCCC--ccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCC
Confidence 99999999985 4679999999998765422 234567899999999998888999999999999999999999998
Q ss_pred CCC-------------------cc--------h--HHHHhhcccCCCCCCCCcccc
Q 046589 702 GPK-------------------FE--------D--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 702 ~~~-------------------~~--------~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
... +. + .+++.+|+..+|++|||++|+
T Consensus 214 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~ei 269 (335)
T d2ozaa1 214 YSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEF 269 (335)
T ss_dssp EETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 520 00 0 079999999999999999986
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.85 E-value=6.7e-22 Score=200.77 Aligned_cols=103 Identities=23% Similarity=0.368 Sum_probs=85.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccC------CCCCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR------ARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~------~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||+||+++.++.+||+|||+++..... ...+...||..|+|||+.. ...++.++||||+||++|||+||+
T Consensus 135 Dlkp~Nill~~~~~~kl~DFG~a~~~~~~--~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~ 212 (277)
T d1phka_ 135 DLKPENILLDDDMNIKLTDFGFSCQLDPG--EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGS 212 (277)
T ss_dssp CCSGGGEEECTTCCEEECCCTTCEECCTT--CCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSS
T ss_pred ccccceEEEcCCCCeEEccchheeEccCC--CceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCC
Confidence 99999999999999999999999876542 2234567889999999653 345688999999999999999999
Q ss_pred CCCCCCcc-----------------------hH--HHHhhcccCCCCCCCCccccC
Q 046589 699 QPTGPKFE-----------------------DK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 699 ~p~~~~~~-----------------------~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.|+...-. ++ +++.+|++.+|++|||++||+
T Consensus 213 ~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil 268 (277)
T d1phka_ 213 PPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEAL 268 (277)
T ss_dssp CSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHT
T ss_pred CCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHH
Confidence 99873110 00 899999999999999999874
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=6e-22 Score=204.29 Aligned_cols=135 Identities=25% Similarity=0.400 Sum_probs=110.6
Q ss_pred ccccccCCCCCCcceEEEeec-CCCCceeeec------------------------------------------------
Q 046589 594 KFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 594 ~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~------------------------------------------------ 624 (729)
.|...+.||+|+||+||+|+. .+|+.||||.
T Consensus 8 rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~~ 87 (299)
T d1ckia_ 8 RYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGP 87 (299)
T ss_dssp TEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCCC
T ss_pred EEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcCC
Confidence 466667899999999999987 5788999995
Q ss_pred ----------------------------------------cccccceEec---CCccEEEeecCCccccCCCCCc-----
Q 046589 625 ----------------------------------------DIKASNILLN---EDFDAKVLDFGLARLISDCKSH----- 656 (729)
Q Consensus 625 ----------------------------------------dlk~~nill~---~~~~~kl~dfgl~~~~~~~~~~----- 656 (729)
|+||+||+++ .+..++++|||+|+........
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~ 167 (299)
T d1ckia_ 88 SLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPY 167 (299)
T ss_dssp BHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCC
T ss_pred chhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceec
Confidence 9999999876 4567999999999986533221
Q ss_pred -ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-Ccc--------------------------hH
Q 046589 657 -ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP-KFE--------------------------DK 708 (729)
Q Consensus 657 -~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~-~~~--------------------------~~ 708 (729)
......||+.|+|||...+..++.++|||||||++|||+||+.|+.. ... ++
T Consensus 168 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 247 (299)
T d1ckia_ 168 RENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSE 247 (299)
T ss_dssp CBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHH
T ss_pred cccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHH
Confidence 12345789999999998888899999999999999999999999862 100 00
Q ss_pred --HHHhhcccCCCCCCCCcccc
Q 046589 709 --DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 709 --~l~~~c~~~~p~~Rp~~~~v 728 (729)
+++..||+.+|++||+++++
T Consensus 248 ~~~li~~cl~~~p~~RP~~~~i 269 (299)
T d1ckia_ 248 FATYLNFCRSLRFDDKPDYSYL 269 (299)
T ss_dssp HHHHHHHHHHSCTTCCCCHHHH
T ss_pred HHHHHHHHccCChhHCcCHHHH
Confidence 68999999999999998764
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=99.84 E-value=3.9e-22 Score=204.28 Aligned_cols=135 Identities=25% Similarity=0.363 Sum_probs=108.5
Q ss_pred ccccccCCCCCCcceEEEeecCCCCceeeec-------------------------------------------------
Q 046589 594 KFCEKNGIGGGGFGTVFKGTMPDGKTVAVKK------------------------------------------------- 624 (729)
Q Consensus 594 ~~~~~~~ig~g~~~~v~k~~~~~~~~~avk~------------------------------------------------- 624 (729)
.|...+.||+|+||+||||+..+|+.||||.
T Consensus 3 ~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~ 82 (286)
T d1ob3a_ 3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHL 82 (286)
T ss_dssp SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECC
T ss_pred CceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEee
Confidence 4556677999999999999999999999996
Q ss_pred ------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCcceeccc
Q 046589 625 ------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVA 662 (729)
Q Consensus 625 ------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~ 662 (729)
|+||+||+++.++.+|++|||+|....... .......
T Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~-~~~~~~~ 161 (286)
T d1ob3a_ 83 DQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPV-RKYTHEI 161 (286)
T ss_dssp SEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----------
T ss_pred hhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceecccCc-cccceec
Confidence 999999999999999999999998765322 1223346
Q ss_pred ccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCCC--------------------cc---------------
Q 046589 663 SAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGPK--------------------FE--------------- 706 (729)
Q Consensus 663 ~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~~--------------------~~--------------- 706 (729)
++..|+|||.... ..++.++||||+||++|||+||+.||... |.
T Consensus 162 ~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (286)
T d1ob3a_ 162 VTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVY 241 (286)
T ss_dssp CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCC
T ss_pred ccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccc
Confidence 7788999997654 55689999999999999999999997420 00
Q ss_pred -------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 707 -------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 707 -------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
+ .+++..|+..+|++|||++|++
T Consensus 242 ~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell 279 (286)
T d1ob3a_ 242 EPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQAL 279 (286)
T ss_dssp CCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred cCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence 0 1789999999999999999863
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.8e-20 Score=188.13 Aligned_cols=151 Identities=25% Similarity=0.224 Sum_probs=88.8
Q ss_pred CCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEE
Q 046589 332 QMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKL 411 (729)
Q Consensus 332 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 411 (729)
.+.+++.+++.++ .+|..+. +++++|+|++|+|++..+..|..+++|++|+|++|+++...+ ...+++|++|
T Consensus 11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-----~~~l~~L~~L 82 (266)
T d1p9ag_ 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-----DGTLPVLGTL 82 (266)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-----CSCCTTCCEE
T ss_pred CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-----cccccccccc
Confidence 3445566666665 3454432 356777777777765555566666667666666666653221 1345566666
Q ss_pred EcCCCcCcccCCcccCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCc
Q 046589 412 DLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491 (729)
Q Consensus 412 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 491 (729)
+|++|++++ .+..+.++++|++|++++|.+.+..+..+..+.+++.|++++|.++...+..+..+++++.+++++|+++
T Consensus 83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~ 161 (266)
T d1p9ag_ 83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (266)
T ss_dssp ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence 666666653 3455666666666666666666555555555666666666666665555555555555555555555554
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=7.1e-22 Score=203.46 Aligned_cols=135 Identities=25% Similarity=0.389 Sum_probs=111.4
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
++|...+.||+|+||+||+|+. .+|+.||||.
T Consensus 2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e 81 (298)
T d1gz8a_ 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 81 (298)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence 3566677899999999999997 5899999996
Q ss_pred ---------------------------------------------cccccceEecCCccEEEeecCCccccCCCCCccee
Q 046589 625 ---------------------------------------------DIKASNILLNEDFDAKVLDFGLARLISDCKSHIST 659 (729)
Q Consensus 625 ---------------------------------------------dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~ 659 (729)
|+||+||+++.++.+|++|||+|+...... ....
T Consensus 82 ~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~-~~~~ 160 (298)
T d1gz8a_ 82 FLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV-RTYT 160 (298)
T ss_dssp CCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCS-BCTT
T ss_pred ecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccCCc-ccce
Confidence 999999999999999999999998765322 2233
Q ss_pred cccccccccCccccCCC-CCCchhhHHHHHHHHHHHHhCCCCCCCC--------------------cc------------
Q 046589 660 DVASAISYVPPEYGRAR-KANERDNIYRFGVVLLELVIRKQPTGPK--------------------FE------------ 706 (729)
Q Consensus 660 ~~~~~~~y~ape~~~~~-~~~~~~Dv~s~G~vl~el~tg~~p~~~~--------------------~~------------ 706 (729)
...+|..|+|||..... .++.++||||+||++|||++|+.|+... |.
T Consensus 161 ~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (298)
T d1gz8a_ 161 HEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF 240 (298)
T ss_dssp CCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTS
T ss_pred eecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhcccccccccccccc
Confidence 45788999999976554 4588999999999999999999997420 00
Q ss_pred ----------------h--HHHHhhcccCCCCCCCCcccc
Q 046589 707 ----------------D--KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 707 ----------------~--~~l~~~c~~~~p~~Rp~~~~v 728 (729)
+ .+++.+|+..+|++|||++|+
T Consensus 241 ~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~el 280 (298)
T d1gz8a_ 241 PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAA 280 (298)
T ss_dssp CCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred ccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 0 168999999999999999986
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.1e-21 Score=204.08 Aligned_cols=105 Identities=26% Similarity=0.306 Sum_probs=83.6
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc---ceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH---ISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQP 700 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~---~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p 700 (729)
|+||+||+++.++.+|++|||+++........ ......+|++|+|||.... ..++.++||||+||++|||+||+.|
T Consensus 142 DlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~p 221 (318)
T d3blha1 142 DMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPI 221 (318)
T ss_dssp CCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CcCchheeecCCCcEEeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCC
Confidence 99999999999999999999999876532211 1223568999999997654 4688999999999999999999999
Q ss_pred CCCCcc---------------------------------------------------h--HHHHhhcccCCCCCCCCccc
Q 046589 701 TGPKFE---------------------------------------------------D--KDIVVGCVSDNPIAKPGMLR 727 (729)
Q Consensus 701 ~~~~~~---------------------------------------------------~--~~l~~~c~~~~p~~Rp~~~~ 727 (729)
|...-. + .+++.+|+..+|++|||++|
T Consensus 222 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~e 301 (318)
T d3blha1 222 MQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDD 301 (318)
T ss_dssp CCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHH
Confidence 862100 0 05889999999999999998
Q ss_pred cC
Q 046589 728 VQ 729 (729)
Q Consensus 728 v~ 729 (729)
++
T Consensus 302 lL 303 (318)
T d3blha1 302 AL 303 (318)
T ss_dssp HH
T ss_pred HH
Confidence 73
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.3e-21 Score=201.29 Aligned_cols=102 Identities=18% Similarity=0.262 Sum_probs=85.0
Q ss_pred cccccceEecC--CccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNE--DFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~--~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++. ...+|++|||+++..... .......+++.|+|||......++.++||||+||++|||+||+.||.
T Consensus 127 DlKp~NIll~~~~~~~ikl~DFG~~~~~~~~--~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~ 204 (321)
T d1tkia_ 127 DIRPENIIYQTRRSSTIKIIEFGQARQLKPG--DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFL 204 (321)
T ss_dssp CCCGGGEEESSSSCCCEEECCCTTCEECCTT--CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred cccccceeecCCCceEEEEcccchhhccccC--CcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCC
Confidence 99999999984 458999999999876532 22334577889999998888889999999999999999999999986
Q ss_pred CCcc---------------h----------HHHHhhcccCCCCCCCCcccc
Q 046589 703 PKFE---------------D----------KDIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 703 ~~~~---------------~----------~~l~~~c~~~~p~~Rp~~~~v 728 (729)
.... . .+++..|+..+|++|||++|+
T Consensus 205 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~ei 255 (321)
T d1tkia_ 205 AETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEA 255 (321)
T ss_dssp CSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred CCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 3111 0 179999999999999999886
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=6.6e-21 Score=200.33 Aligned_cols=105 Identities=27% Similarity=0.375 Sum_probs=84.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCc--ceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSH--ISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPT 701 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~--~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~ 701 (729)
|+||+|||++.++.+||+|||+|+........ ......++..|+|||... ...++.++||||+||++|||+||+.||
T Consensus 134 DIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf 213 (345)
T d1pmea_ 134 DLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF 213 (345)
T ss_dssp CCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSC
T ss_pred CCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCC
Confidence 99999999999999999999999876532221 123457888999999764 456789999999999999999999997
Q ss_pred CCCc-------------------------------------------c-------h--HHHHhhcccCCCCCCCCccccC
Q 046589 702 GPKF-------------------------------------------E-------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 702 ~~~~-------------------------------------------~-------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
...- . . .+++..|+..||+.|||++|++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L 293 (345)
T d1pmea_ 214 PGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 293 (345)
T ss_dssp CCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred CCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence 5210 0 0 1699999999999999999863
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.82 E-value=4e-21 Score=197.15 Aligned_cols=135 Identities=23% Similarity=0.338 Sum_probs=110.3
Q ss_pred ccccccCCCCCCcceEEEeecC-CCCceeeec------------------------------------------------
Q 046589 594 KFCEKNGIGGGGFGTVFKGTMP-DGKTVAVKK------------------------------------------------ 624 (729)
Q Consensus 594 ~~~~~~~ig~g~~~~v~k~~~~-~~~~~avk~------------------------------------------------ 624 (729)
.|...+.||+|+||+||+|+.. +|+.||||.
T Consensus 6 ~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~~~ 85 (293)
T d1csna_ 6 HYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLLGP 85 (293)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECCCC
T ss_pred ceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEecCC
Confidence 4566678999999999999974 788999995
Q ss_pred ----------------------------------------cccccceEecC-----CccEEEeecCCccccCCCCCc---
Q 046589 625 ----------------------------------------DIKASNILLNE-----DFDAKVLDFGLARLISDCKSH--- 656 (729)
Q Consensus 625 ----------------------------------------dlk~~nill~~-----~~~~kl~dfgl~~~~~~~~~~--- 656 (729)
|+||+||+++. ++.+|++|||+|+........
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~ 165 (293)
T d1csna_ 86 SLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHI 165 (293)
T ss_dssp BHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBC
T ss_pred CHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccccce
Confidence 99999999974 578999999999886532211
Q ss_pred ---ceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCC-C-cc-------------------------
Q 046589 657 ---ISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTGP-K-FE------------------------- 706 (729)
Q Consensus 657 ---~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~~-~-~~------------------------- 706 (729)
......||+.|+|||......++.++||||+||++|||+||+.|+.. . ..
T Consensus 166 ~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p 245 (293)
T d1csna_ 166 PYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFP 245 (293)
T ss_dssp CCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSC
T ss_pred eecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCC
Confidence 12245789999999998888899999999999999999999999863 1 00
Q ss_pred hH--HHHhhcccCCCCCCCCcccc
Q 046589 707 DK--DIVVGCVSDNPIAKPGMLRV 728 (729)
Q Consensus 707 ~~--~l~~~c~~~~p~~Rp~~~~v 728 (729)
++ +++..|++.+|++||+++.+
T Consensus 246 ~~l~~ii~~~~~~~~~~rP~y~~l 269 (293)
T d1csna_ 246 EEFYKYMHYARNLAFDATPDYDYL 269 (293)
T ss_dssp HHHHHHHHHHHHCCTTCCCCHHHH
T ss_pred HHHHHHHHHHhcCCcccCcCHHHH
Confidence 00 67889999999999987654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.82 E-value=9.7e-18 Score=175.97 Aligned_cols=299 Identities=25% Similarity=0.307 Sum_probs=165.4
Q ss_pred CcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEee
Q 046589 106 RVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLC 185 (729)
Q Consensus 106 ~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls 185 (729)
+++.|+|+++.++ .+|+. +++|++|+|++|+|+.+ |.. +.+|+.|++++|+++ .+++. .+.|++|+++
T Consensus 39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~ 106 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTEL-PEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS 106 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCccc-ccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence 4567777777765 35542 35677777777777654 322 346677777777665 33321 1346667777
Q ss_pred ccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccccc
Q 046589 186 SNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGN 265 (729)
Q Consensus 186 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 265 (729)
+|.+. .+|. ++.+++|++|++++|.+.. .+.. ...+..+.+..+.... ...+..++.++.+++++|....
T Consensus 107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~~---~~~l~~l~~~~~~~~~---~~~l~~l~~l~~L~l~~n~~~~- 176 (353)
T d1jl5a_ 107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE---LPELQNLPFLTAIYADNNSLKK- 176 (353)
T ss_dssp SSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSCCSS-
T ss_pred ccccc-cccc-hhhhccceeeccccccccc-cccc---cccccchhhccccccc---cccccccccceecccccccccc-
Confidence 77665 4443 4566667777766666652 2222 2344455554443321 1234455556666665555432
Q ss_pred CCccccCCCcCCeeccccccccccccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCccee
Q 046589 266 IPPEISHLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIG 345 (729)
Q Consensus 266 ~p~~l~~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 345 (729)
.+..... .. .+....+.+. .+| .+..++.++.+++++|....
T Consensus 177 ~~~~~~~---~~---------------------------------~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~ 218 (353)
T d1jl5a_ 177 LPDLPLS---LE---------------------------------SIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT 218 (353)
T ss_dssp CCCCCTT---CC---------------------------------EEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS
T ss_pred ccccccc---cc---------------------------------cccccccccc-ccc-cccccccccccccccccccc
Confidence 1111000 00 1111111111 122 23456778888888876543
Q ss_pred cCCCCCcCCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcc
Q 046589 346 RIPLEVGNCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKE 425 (729)
Q Consensus 346 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 425 (729)
++ ....++..+.+.++.+... +. ....+...++..+.+.+... . .......++..|.+.+.
T Consensus 219 -~~---~~~~~l~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~~l~~-l------~~~~~~~~~~~~~~~~~---- 279 (353)
T d1jl5a_ 219 -LP---DLPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLSE-L------PPNLYYLNASSNEIRSL---- 279 (353)
T ss_dssp -CC---SCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEESC-C------CTTCCEEECCSSCCSEE----
T ss_pred -cc---ccccccccccccccccccc-cc---cccccccccccccccccccc-c------cchhcccccccCccccc----
Confidence 23 2345677788888877532 21 23455666666655442211 0 12334566666665532
Q ss_pred cCCCCCCCEEEccCCccccccCcCccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCc
Q 046589 426 IGNLRSIQILKLNSNFFNGSIPMRLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491 (729)
Q Consensus 426 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 491 (729)
...+++|++|++++|+++ .+|.. +++|+.|+|++|+|+ .+|+. +++|+.|++++|+++
T Consensus 280 ~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~ 337 (353)
T d1jl5a_ 280 CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR 337 (353)
T ss_dssp CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence 234678888888888887 56643 567888888888887 55643 457888888888876
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=5.2e-21 Score=201.56 Aligned_cols=103 Identities=23% Similarity=0.262 Sum_probs=83.3
Q ss_pred cccccceEecCCc-cEEEeecCCccccCCCCCcceecccccccccCccccC-CCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDF-DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGR-ARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~-~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~-~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+|||++.++ .+||+|||+++...... ......++..|+|||... ...++.++||||+||++|||+||+.||.
T Consensus 147 DiKp~NILl~~~~~~~kl~DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~ 224 (350)
T d1q5ka_ 147 DIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE--PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFP 224 (350)
T ss_dssp CCCGGGEEECTTTCCEEECCCTTCEECCTTS--CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSC
T ss_pred CCCcceEEEecCCCceeEecccchhhccCCc--ccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCC
Confidence 9999999999764 89999999998765322 223457788999999654 4678999999999999999999999975
Q ss_pred CCc------------------------------------------------chH--HHHhhcccCCCCCCCCccccC
Q 046589 703 PKF------------------------------------------------EDK--DIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 703 ~~~------------------------------------------------~~~--~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
..- .++ +++.+|+..||++|||++|++
T Consensus 225 ~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L 301 (350)
T d1q5ka_ 225 GDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEAC 301 (350)
T ss_dssp CSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence 210 000 689999999999999999873
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=5.6e-21 Score=198.39 Aligned_cols=100 Identities=24% Similarity=0.410 Sum_probs=79.7
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC--CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA--RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~--~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||+||+++.++.+|++|||+|+..............+++.|+|||.... ..++.++||||+||++|||+||+.||.
T Consensus 154 DiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~ 233 (322)
T d1vzoa_ 154 DIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFT 233 (322)
T ss_dssp CCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTS
T ss_pred cCCccceeecCCCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999998765333333345678889999997643 356889999999999999999999986
Q ss_pred CC-cc----------------------hH--HHHhhcccCCCCCCCC
Q 046589 703 PK-FE----------------------DK--DIVVGCVSDNPIAKPG 724 (729)
Q Consensus 703 ~~-~~----------------------~~--~l~~~c~~~~p~~Rp~ 724 (729)
.. .. ++ +++.+|+..+|++|||
T Consensus 234 ~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s 280 (322)
T d1vzoa_ 234 VDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLG 280 (322)
T ss_dssp CTTSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTT
T ss_pred CCCHHHHHHHHHHhcccCCCCCcccCCHHHHHHHHHHcccCHHHcCC
Confidence 31 00 00 7999999999999996
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.4e-20 Score=193.20 Aligned_cols=104 Identities=21% Similarity=0.338 Sum_probs=83.5
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCC-CCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRAR-KANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~-~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||.|+...... .......++..|+|||..... .++.++||||+||++|||++|+.|+..
T Consensus 126 DiKP~NIli~~~~~~kl~DFG~a~~~~~~~-~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~ 204 (292)
T d1unla_ 126 DLKPQNLLINRNGELKLANFGLARAFGIPV-RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP 204 (292)
T ss_dssp CCSGGGEEECTTCCEEECCCTTCEECCSCC-SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCC
T ss_pred cccCcccccccCCceeeeecchhhcccCCC-ccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCC
Confidence 999999999999999999999998865422 222344667789999976654 468999999999999999999999631
Q ss_pred --C-------------------cc----------------------------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 --K-------------------FE----------------------------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 --~-------------------~~----------------------------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. |. + .+++.+|++.+|.+|||++||+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L 281 (292)
T d1unla_ 205 GNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEAL 281 (292)
T ss_dssp CSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHT
T ss_pred CCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHh
Confidence 0 00 0 0689999999999999999875
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.5e-20 Score=197.77 Aligned_cols=101 Identities=23% Similarity=0.301 Sum_probs=83.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+|+..... .+...++..|+|||...+ ..++.++||||+||++|||++|+.|+..
T Consensus 146 DiKp~NIL~~~~~~~kl~Dfg~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~ 221 (346)
T d1cm8a_ 146 DLKPGNLAVNEDCELKILDFGLARQADSE----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKG 221 (346)
T ss_dssp CCCGGGEEECTTCCEEECCCTTCEECCSS----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred ccCcchhhcccccccccccccceeccCCc----cccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCC
Confidence 99999999999999999999999875432 234578899999997654 5568999999999999999999999752
Q ss_pred C-------------------------------------------cc-------h--HHHHhhcccCCCCCCCCccccC
Q 046589 704 K-------------------------------------------FE-------D--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~-------------------------------------------~~-------~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
. |. + .+++..|+..+|++|||++|++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL 299 (346)
T d1cm8a_ 222 SDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEAL 299 (346)
T ss_dssp SSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred CChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHh
Confidence 1 00 0 0689999999999999999873
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.79 E-value=4.8e-17 Score=170.55 Aligned_cols=280 Identities=28% Similarity=0.312 Sum_probs=157.7
Q ss_pred CCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEc
Q 046589 129 SKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDF 208 (729)
Q Consensus 129 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 208 (729)
.++++|||++|.++.++ + ..++|++|+|++|+|+ .+|+.+ .+|++|++++|+++ .++.. .+.|++|++
T Consensus 38 ~~l~~LdLs~~~L~~lp-~---~~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L 105 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLP-E---LPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGV 105 (353)
T ss_dssp HTCSEEECTTSCCSCCC-S---CCTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred cCCCEEEeCCCCCCCCC-C---CCCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence 36889999999998754 3 3568999999999998 678654 57888899999887 33321 136888999
Q ss_pred cCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccccc
Q 046589 209 SGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQFTG 288 (729)
Q Consensus 209 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l~~ 288 (729)
++|.+. .+|. ++.+++|++|++++|.+.. .+ .....+..+++..+... .+..+..++.++.++++.|....
T Consensus 106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~----~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~ 176 (353)
T d1jl5a_ 106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LP----DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK 176 (353)
T ss_dssp CSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred cccccc-cccc-hhhhccceeeccccccccc-cc----cccccccchhhcccccc--ccccccccccceecccccccccc
Confidence 888887 5554 5778888888888887763 22 23455666666555433 22334445555555544443321
Q ss_pred cccccccCCCCcccccccceeEEEEccCCCCCCCcchhcCCCCCCCEEEccCCcceecCCCCCcCCCCCcEEEecCCCCC
Q 046589 289 SIQSELGNCKNFKSVLAELQIFTFSAGMNQLSGPLPSWLGKWNQMESVWLNNNQFIGRIPLEVGNCSMLKYIRLSNNKLS 368 (729)
Q Consensus 289 ~~~~~l~~l~~l~~~l~~l~l~~l~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 368 (729)
.+. .....+.+...++.+. .++ .+..++.|+.+++++|...
T Consensus 177 ----------------------------------~~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~ 217 (353)
T d1jl5a_ 177 ----------------------------------LPD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK 217 (353)
T ss_dssp ----------------------------------CCC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred ----------------------------------ccc---cccccccccccccccc-ccc-ccccccccccccccccccc
Confidence 000 0112234444444432 222 3456667777777777654
Q ss_pred CCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCCCEEEccCCccccccCc
Q 046589 369 GSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSIQILKLNSNFFNGSIPM 448 (729)
Q Consensus 369 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 448 (729)
. ++. ...++..+.+.++.+..... ..+.+...++..+.+.+. +. -.......++..+.+.+. +
T Consensus 218 ~-~~~---~~~~l~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~l-~~---l~~~~~~~~~~~~~~~~~-~- 280 (353)
T d1jl5a_ 218 T-LPD---LPPSLEALNVRDNYLTDLPE-------LPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-C- 280 (353)
T ss_dssp S-CCS---CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-C-
T ss_pred c-ccc---cccccccccccccccccccc-------cccccccccccccccccc-cc---ccchhcccccccCccccc-c-
Confidence 3 222 23445566666665543221 123344555555544321 10 112334455555554422 1
Q ss_pred CccCCCCCCEEEcccccCCccCchhhhcCCCCCEEeCCCCcCc
Q 046589 449 RLGDSTSLNILELGNNNLNGSIPEKIADLAQLQFLDLSYNNLS 491 (729)
Q Consensus 449 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 491 (729)
..+++|++|+|++|+++ .+|.. +++|+.|++++|+|+
T Consensus 281 --~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~ 317 (353)
T d1jl5a_ 281 --DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA 317 (353)
T ss_dssp --CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred --ccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC
Confidence 22455666666666665 34432 345556666666554
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=6.7e-20 Score=193.32 Aligned_cols=76 Identities=32% Similarity=0.404 Sum_probs=58.4
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
|+||.||+++.++..+++|||+++..... .......+|..|+|||...+..++.++||||+||+++||++|+.||.
T Consensus 144 DlKP~Nil~~~~~~~kl~df~~~~~~~~~--~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~ 219 (355)
T d2b1pa1 144 DLKPSNIVVKSDCTLKILDFGLARTAGTS--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 219 (355)
T ss_dssp CCCGGGEEECTTCCEEECCCCC-----------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred cCCccccccccccceeeechhhhhccccc--cccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCC
Confidence 99999999999999999999998875532 22334577899999999888889999999999999999999999974
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=99.77 E-value=1e-19 Score=189.88 Aligned_cols=108 Identities=19% Similarity=0.377 Sum_probs=91.3
Q ss_pred cccccccCCCCCCcceEEEeec-CCCCceeeec-----------------------------------------------
Q 046589 593 NKFCEKNGIGGGGFGTVFKGTM-PDGKTVAVKK----------------------------------------------- 624 (729)
Q Consensus 593 ~~~~~~~~ig~g~~~~v~k~~~-~~~~~~avk~----------------------------------------------- 624 (729)
++|.....||.|+||+||+|+. .+|+.||||.
T Consensus 35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~ 114 (328)
T d3bqca1 35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHV 114 (328)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECC
T ss_pred cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeec
Confidence 5677888899999999999997 5889999996
Q ss_pred ---------------------------------------cccccceEecCC-ccEEEeecCCccccCCCCCcceeccccc
Q 046589 625 ---------------------------------------DIKASNILLNED-FDAKVLDFGLARLISDCKSHISTDVASA 664 (729)
Q Consensus 625 ---------------------------------------dlk~~nill~~~-~~~kl~dfgl~~~~~~~~~~~~~~~~~~ 664 (729)
|+||+|||++.+ ..+|++|||+|+...... ......+|
T Consensus 115 ~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~--~~~~~~~t 192 (328)
T d3bqca1 115 NNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ--EYNVRVAS 192 (328)
T ss_dssp CSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTC--CCCSCCSC
T ss_pred CCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccCCC--cccccccC
Confidence 999999999865 578999999998765422 23345778
Q ss_pred ccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCC
Q 046589 665 ISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTG 702 (729)
Q Consensus 665 ~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~ 702 (729)
..|+|||.... ..++.++||||+||+++|+++|+.|+.
T Consensus 193 ~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~ 231 (328)
T d3bqca1 193 RYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFF 231 (328)
T ss_dssp GGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred ccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCC
Confidence 89999997655 457899999999999999999999974
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.6e-19 Score=188.49 Aligned_cols=101 Identities=26% Similarity=0.315 Sum_probs=78.9
Q ss_pred cccccceEecCCccEEEeecCCccccCCCCCcceecccccccccCccccCC-CCCCchhhHHHHHHHHHHHHhCCCCCCC
Q 046589 625 DIKASNILLNEDFDAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRA-RKANERDNIYRFGVVLLELVIRKQPTGP 703 (729)
Q Consensus 625 dlk~~nill~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~-~~~~~~~Dv~s~G~vl~el~tg~~p~~~ 703 (729)
|+||+||+++.++.+|++|||+|..... ...+..++..|+|||.... ..++.++||||+||++|||++|+.||..
T Consensus 146 DiKp~NILi~~~~~~kl~dfg~a~~~~~----~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~ 221 (348)
T d2gfsa1 146 DLKPSNLAVNEDCELKILDFGLARHTDD----EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPG 221 (348)
T ss_dssp CCCGGGEEECTTCCEEECCC----CCTG----GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred ccCCccccccccccccccccchhcccCc----ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCC
Confidence 9999999999999999999999876432 2234567889999997554 4568899999999999999999999752
Q ss_pred Cc--------------------------------------------------ch--HHHHhhcccCCCCCCCCccccC
Q 046589 704 KF--------------------------------------------------ED--KDIVVGCVSDNPIAKPGMLRVQ 729 (729)
Q Consensus 704 ~~--------------------------------------------------~~--~~l~~~c~~~~p~~Rp~~~~v~ 729 (729)
.- .+ .+++.+|+..+|++|||++|++
T Consensus 222 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL 299 (348)
T d2gfsa1 222 TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQAL 299 (348)
T ss_dssp SSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHh
Confidence 10 00 1689999999999999999863
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=9.2e-19 Score=185.32 Aligned_cols=74 Identities=22% Similarity=0.231 Sum_probs=62.3
Q ss_pred cccccceEecCCc------cEEEeecCCccccCCCCCcceecccccccccCccccCCCCCCchhhHHHHHHHHHHHHhCC
Q 046589 625 DIKASNILLNEDF------DAKVLDFGLARLISDCKSHISTDVASAISYVPPEYGRARKANERDNIYRFGVVLLELVIRK 698 (729)
Q Consensus 625 dlk~~nill~~~~------~~kl~dfgl~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~s~G~vl~el~tg~ 698 (729)
|+||+||+++.++ .++++|||.|+..... .....++..|+|||......++.++||||+||+++||+||+
T Consensus 151 DlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~ 226 (362)
T d1q8ya_ 151 DIKPENVLMEIVDSPENLIQIKIADLGNACWYDEH----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGD 226 (362)
T ss_dssp CCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBC----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred cCChhHeeeeccCcccccceeeEeecccccccccc----cccccccccccChhhccccCCCccccccchHHHHHHHHHCC
Confidence 9999999998554 4899999998765421 23456888999999888888999999999999999999999
Q ss_pred CCCC
Q 046589 699 QPTG 702 (729)
Q Consensus 699 ~p~~ 702 (729)
.||.
T Consensus 227 ~pF~ 230 (362)
T d1q8ya_ 227 FLFE 230 (362)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 9975
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.72 E-value=1.4e-17 Score=159.27 Aligned_cols=171 Identities=20% Similarity=0.225 Sum_probs=134.8
Q ss_pred EEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCC-CCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeecc
Q 046589 109 YQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFG-QPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN 187 (729)
Q Consensus 109 ~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N 187 (729)
.++.++++++ .+|..+. +++++|+|++|+|++ ..+..|.++++|+.|+|++|++....+..+..+++|++|+|++|
T Consensus 12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 4677888887 5776553 689999999999986 45667889999999999999999888899999999999999999
Q ss_pred CCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCC
Q 046589 188 SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIP 267 (729)
Q Consensus 188 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 267 (729)
+++...|.+|.++++|++|+|++|+|+...|..|..+++|++|+|++|.+........+. ..++.+.+..+.+....|
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p 166 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSS
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCCC
Confidence 999888888999999999999999999777888999999999999999887544433332 234555666777766666
Q ss_pred ccccCCCcCCeecccccccc
Q 046589 268 PEISHLKKLSDHYLGINQFT 287 (729)
Q Consensus 268 ~~l~~l~~L~~l~l~~n~l~ 287 (729)
..+ +.++.++++.|.++
T Consensus 167 ~~l---~~~~l~~L~~n~l~ 183 (192)
T d1w8aa_ 167 SKV---RDVQIKDLPHSEFK 183 (192)
T ss_dssp TTT---TTSBGGGSCTTTCC
T ss_pred hhh---cCCEeeecCHhhCc
Confidence 543 44556666666654
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=6.7e-20 Score=199.86 Aligned_cols=194 Identities=20% Similarity=0.163 Sum_probs=118.8
Q ss_pred CCCCCCCEEEccCCccee-----cCCCCCcCCCCCcEEEecCCCCCCCC----cccccCCCCCcEEEcCCCCCCCCcccc
Q 046589 328 GKWNQMESVWLNNNQFIG-----RIPLEVGNCSMLKYIRLSNNKLSGSI----PRELNDSESLVEINLDGNMLSGTIEDV 398 (729)
Q Consensus 328 ~~l~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~~~~ 398 (729)
.....++.+++.+|.+.. ...........++.+++++|.+.... ...+...+.++.+++++|.++......
T Consensus 223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~ 302 (460)
T d1z7xw1 223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302 (460)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred cccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 345677788888876532 12222344567888888888876322 223455678888888888775322111
Q ss_pred ccc--cCCCCCCcEEEcCCCcCcccCCc----ccCCCCCCCEEEccCCccccc----cCcCcc-CCCCCCEEEcccccCC
Q 046589 399 FGR--CTNLSQLEKLDLSSNMLTGRIPK----EIGNLRSIQILKLNSNFFNGS----IPMRLG-DSTSLNILELGNNNLN 467 (729)
Q Consensus 399 ~~~--~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~ 467 (729)
+.. ......|+.+++++|.++..... .+...++|++|+|++|++++. ++..+. ..+.|++|+|++|+++
T Consensus 303 l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 382 (460)
T d1z7xw1 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 382 (460)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred hhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCC
Confidence 111 12234688888888887754322 334566888888888888643 233332 3567888888888887
Q ss_pred cc----CchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcc
Q 046589 468 GS----IPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSG 528 (729)
Q Consensus 468 ~~----~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g 528 (729)
.. +++.+...++|++|||++|+|+......+...+ . .....|+.++++.|.+..
T Consensus 383 ~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l---~----~~~~~L~~l~l~~~~~~~ 440 (460)
T d1z7xw1 383 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV---R----QPGCLLEQLVLYDIYWSE 440 (460)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH---T----STTCCCCEEECTTCCCCH
T ss_pred hHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHH---H----hCCCccCEEECCCCCCCH
Confidence 43 445566778888888888888753332222111 0 022357778888877764
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=9e-20 Score=198.83 Aligned_cols=383 Identities=20% Similarity=0.180 Sum_probs=232.8
Q ss_pred CcEEEEcCCCCCcCc-CCccCCCCCCCcEEECCCCCCCCC----CcccccCCCCCCEEeccCCcCccc----CCcccc-C
Q 046589 106 RVVYQVLRTQSLKGP-VSPLLFDLSKLRVLNLSQNLLFGQ----PSPQVSNLKRLKMLSLGENQLSGS----LPSQLG-V 175 (729)
Q Consensus 106 ~~~~l~l~~~~l~~~-~~~~l~~L~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~-~ 175 (729)
+++.+|++.+++++. +...+..++++++|+|++|+++.. +...+..+++|++|||++|.|+.. +...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 467889988888764 344556678889999999988732 334567788999999999988632 222222 2
Q ss_pred CCCCcEEEeeccCCCcc----CCccccCCCCCcEEEccCCCCCCCCcccc----C-CCCCCCeeeccCCcCCCCC---Ch
Q 046589 176 LTWLETLSLCSNSFTGE----MPSELGDMKQLKSLDFSGNGFNGTVPIRL----G-ELTRLQDLDLSDNLLSGSL---TV 243 (729)
Q Consensus 176 L~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~-~l~~L~~L~L~~N~l~~~~---~~ 243 (729)
..+|++|+|++|+++.. ++..+..+++|++|+|++|.+.......+ . ..............+...- ..
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 34799999999988743 45567788899999999998763222111 1 1122233333333221000 01
Q ss_pred hhhccCCCCCEEEcccccccccCCc----ccc-CCCcCCeeccccccccccccccccCCCCcccccc-cceeEEEEccCC
Q 046589 244 SLFTNLQSLSYLDVSNNLLSGNIPP----EIS-HLKKLSDHYLGINQFTGSIQSELGNCKNFKSVLA-ELQIFTFSAGMN 317 (729)
Q Consensus 244 ~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~-~l~~L~~l~l~~n~l~~~~~~~l~~l~~l~~~l~-~l~l~~l~l~~n 317 (729)
..+.....++.++++.+......-. .+. .-.....+....+.+..... ......+. ...+..+....|
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~------~~~~~~l~~~~~~~~l~~~~n 236 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC------RDLCGIVASKASLRELALGSN 236 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH------HHHHHHHHHCTTCCEEECCSS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhh------hcccccccccccccccchhhc
Confidence 2234567788888877665421100 010 11122333333333221100 00000011 111345555555
Q ss_pred CCCC-----CcchhcCCCCCCCEEEccCCcceec----CCCCCcCCCCCcEEEecCCCCCCCCcccc-----cCCCCCcE
Q 046589 318 QLSG-----PLPSWLGKWNQMESVWLNNNQFIGR----IPLEVGNCSMLKYIRLSNNKLSGSIPREL-----NDSESLVE 383 (729)
Q Consensus 318 ~l~~-----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~ 383 (729)
.... ..+........++.+++++|.+... ....+...+.++.+++++|.++......+ .....|+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~ 316 (460)
T d1z7xw1 237 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 316 (460)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred cccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 4422 1223344567899999999987532 12234456789999999999864332222 23468999
Q ss_pred EEcCCCCCCCCccccccc-cCCCCCCcEEEcCCCcCccc----CCcccC-CCCCCCEEEccCCccccc----cCcCccCC
Q 046589 384 INLDGNMLSGTIEDVFGR-CTNLSQLEKLDLSSNMLTGR----IPKEIG-NLRSIQILKLNSNFFNGS----IPMRLGDS 453 (729)
Q Consensus 384 L~L~~N~l~~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~L~~N~l~~~----~p~~~~~l 453 (729)
+++++|.++......+.. +...++|++|+|++|++++. ++..+. ..+.|++|+|++|.|+.. ++..+...
T Consensus 317 l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 396 (460)
T d1z7xw1 317 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 396 (460)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred ccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcC
Confidence 999999887543333322 23456799999999999753 333443 567899999999999743 34456677
Q ss_pred CCCCEEEcccccCCccCchhh----h-cCCCCCEEeCCCCcCcccc
Q 046589 454 TSLNILELGNNNLNGSIPEKI----A-DLAQLQFLDLSYNNLSRPI 494 (729)
Q Consensus 454 ~~L~~L~Ls~N~l~~~~p~~l----~-~l~~L~~LdLs~N~l~~~~ 494 (729)
++|++|+|++|+++......+ . +...|+.|++++|.+....
T Consensus 397 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~ 442 (460)
T d1z7xw1 397 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 442 (460)
T ss_dssp CCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred CCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence 899999999999986544333 2 3447999999999987543
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=7.7e-17 Score=160.01 Aligned_cols=105 Identities=19% Similarity=0.290 Sum_probs=78.0
Q ss_pred CCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCC-ccccCCCCCCCeeecc
Q 046589 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTV-PIRLGELTRLQDLDLS 233 (729)
Q Consensus 155 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~ 233 (729)
.+.++.+++.++ .+|+.+. +++++|+|++|+++...+..|.++++|++|++++|.+...+ +..|..+++++++.+.
T Consensus 10 ~~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~ 86 (242)
T d1xwdc1 10 NRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86 (242)
T ss_dssp SSEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred CCEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence 367888888887 6776653 57888999999888666667888888999988888876544 3467778888888765
Q ss_pred C-CcCCCCCChhhhccCCCCCEEEccccccc
Q 046589 234 D-NLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 234 ~-N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 263 (729)
. |.+. .++...|..+++|+++++++|.+.
T Consensus 87 ~~n~l~-~~~~~~~~~l~~L~~l~l~~~~l~ 116 (242)
T d1xwdc1 87 KANNLL-YINPEAFQNLPNLQYLLISNTGIK 116 (242)
T ss_dssp CCTTCC-EECTTSEECCTTCCEEEEESCCCC
T ss_pred cccccc-ccccccccccccccccccchhhhc
Confidence 4 4554 455566777888888888777765
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=2.3e-16 Score=154.97 Aligned_cols=141 Identities=26% Similarity=0.326 Sum_probs=97.3
Q ss_pred EEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCC
Q 046589 110 QVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSF 189 (729)
Q Consensus 110 l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l 189 (729)
.+++.+.+.+.+ .+.++.+|+.|++++|.++.. +.+.++++|++|++++|++++..| +..+++|+++++++|.+
T Consensus 24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~ 97 (227)
T d1h6ua2 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (227)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence 345556666543 345677888888888888765 347788888888888888875433 77888888888888887
Q ss_pred CccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccc
Q 046589 190 TGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 190 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 263 (729)
+ .+ +.+.++++|++++++++...+. ..+...+.++.+.++++.+... ..+...++|++|++++|.+.
T Consensus 98 ~-~i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~ 164 (227)
T d1h6ua2 98 K-NV-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQVS 164 (227)
T ss_dssp S-CC-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCCEEECCSSCCC
T ss_pred c-cc-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh---hhhccccccccccccccccc
Confidence 6 33 3577788888888888776533 2355667777777777766532 22556667777777666554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=2.9e-16 Score=154.26 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=43.0
Q ss_pred CCCCCcEEEecCCCCCCCCcccccCCCCCcEEEcCCCCCCCCccccccccCCCCCCcEEEcCCCcCcccCCcccCCCCCC
Q 046589 353 NCSMLKYIRLSNNKLSGSIPRELNDSESLVEINLDGNMLSGTIEDVFGRCTNLSQLEKLDLSSNMLTGRIPKEIGNLRSI 432 (729)
Q Consensus 353 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 432 (729)
.+++|++|++++|++.+. ..+..+++|+.|++++|++++..+ +.++++|++|+|++|++++. + .++++++|
T Consensus 149 ~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~~-----l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L 219 (227)
T d1h6ua2 149 GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISP-----LASLPNLIEVHLKNNQISDV-S-PLANTSNL 219 (227)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECTTSCCCBC-G-GGTTCTTC
T ss_pred cccccccccccccccccc--hhhcccccceecccCCCccCCChh-----hcCCCCCCEEECcCCcCCCC-c-ccccCCCC
Confidence 344455555555555422 124555556666666665554221 23456677777777777643 2 26677777
Q ss_pred CEEEcc
Q 046589 433 QILKLN 438 (729)
Q Consensus 433 ~~L~L~ 438 (729)
++|+++
T Consensus 220 ~~L~ls 225 (227)
T d1h6ua2 220 FIVTLT 225 (227)
T ss_dssp CEEEEE
T ss_pred CEEEee
Confidence 777775
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.8e-16 Score=157.29 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=41.9
Q ss_pred CCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccC-CccccCCCCCcEEEeec-cCCCccCCccccCCCCCcEEE
Q 046589 130 KLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSL-PSQLGVLTWLETLSLCS-NSFTGEMPSELGDMKQLKSLD 207 (729)
Q Consensus 130 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~L~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~ 207 (729)
++++||+++|.++.+++.+|.++++|++|++++|.+...+ +..|..++.++++++.. |++....+..|.++++|++|+
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~ 109 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 109 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence 4555555555555544445555555555555555544322 23444555555554432 344444444445555555555
Q ss_pred ccCCCCC
Q 046589 208 FSGNGFN 214 (729)
Q Consensus 208 Ls~N~l~ 214 (729)
+++|.+.
T Consensus 110 l~~~~l~ 116 (242)
T d1xwdc1 110 ISNTGIK 116 (242)
T ss_dssp EESCCCC
T ss_pred cchhhhc
Confidence 5555443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.66 E-value=1.7e-16 Score=151.59 Aligned_cols=131 Identities=24% Similarity=0.292 Sum_probs=113.4
Q ss_pred CcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCccc-CCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEcc
Q 046589 131 LRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGS-LPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFS 209 (729)
Q Consensus 131 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 209 (729)
.++++.++++++.++.. + .+++++|+|++|+|+.. .+..|.++++|++|+|++|+++...+..|..+++|++|+|+
T Consensus 10 ~~~v~Cs~~~L~~iP~~-l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 10 GTTVDCTGRGLKEIPRD-I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSC-C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEEeCCCcCccCCC-C--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence 45789999999876543 3 25899999999999754 46677899999999999999998899999999999999999
Q ss_pred CCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccccc
Q 046589 210 GNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGN 265 (729)
Q Consensus 210 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 265 (729)
+|+++...|..|.++++|++|+|++|+|+ .++...|..+++|++|+|++|.+...
T Consensus 87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L~~l~L~~N~~~~~ 141 (192)
T d1w8aa_ 87 ENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cccccccCHHHHhCCCcccccccCCcccc-ccCHHHhcCCcccccccccccccccc
Confidence 99999877888999999999999999998 67778899999999999999988753
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.64 E-value=6.6e-16 Score=149.59 Aligned_cols=146 Identities=27% Similarity=0.388 Sum_probs=77.9
Q ss_pred CCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEE
Q 046589 128 LSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLD 207 (729)
Q Consensus 128 L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 207 (729)
+.+|+.|++++|.++... .+..+++|++|+|++|++++ ++ .++.+++|++|++++|++++ +| .+.++++|+.|+
T Consensus 45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (210)
T ss_dssp HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cccccccccccc
Confidence 445566666666555432 24555666666666666653 22 24555666666666666552 33 355566666666
Q ss_pred ccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccccCCCcCCeeccccccc
Q 046589 208 FSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEISHLKKLSDHYLGINQF 286 (729)
Q Consensus 208 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l~~n~l 286 (729)
+++|.+.. + ..+..+++|+.+++++|.+++ . ..+..+++|+++++++|++++ ++ .+..+++|+.++++.|++
T Consensus 119 l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~-~--~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i 190 (210)
T d1h6ta2 119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHI 190 (210)
T ss_dssp CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred cccccccc-c-ccccccccccccccccccccc-c--ccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCC
Confidence 66665542 2 235555566666666665542 1 224455566666666665553 22 255555555555555544
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.64 E-value=1.5e-15 Score=147.10 Aligned_cols=165 Identities=29% Similarity=0.316 Sum_probs=139.7
Q ss_pred cCCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEE
Q 046589 104 LLRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLS 183 (729)
Q Consensus 104 ~~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 183 (729)
+..++.++++++.+++. + .+..+++|++|++++|++++.. .++.+++|++|++++|++++ +| .++.+++|+.|+
T Consensus 45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (210)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence 44688999999988753 2 3778999999999999999864 46889999999999999984 55 589999999999
Q ss_pred eeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEccccccc
Q 046589 184 LCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 184 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 263 (729)
+++|.+.. + ..+.++++|+.+++++|.+++ +..+..+++|+++++++|++++ ++ .+.++++|++|++++|+++
T Consensus 119 l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~--~l~~l~~L~~L~Ls~N~i~ 191 (210)
T d1h6ta2 119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV--PLAGLTKLQNLYLSKNHIS 191 (210)
T ss_dssp CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCC
T ss_pred cccccccc-c-ccccccccccccccccccccc--cccccccccccccccccccccc-cc--cccCCCCCCEEECCCCCCC
Confidence 99999863 3 468899999999999999974 3457889999999999999984 43 3789999999999999998
Q ss_pred ccCCccccCCCcCCeecccc
Q 046589 264 GNIPPEISHLKKLSDHYLGI 283 (729)
Q Consensus 264 ~~~p~~l~~l~~L~~l~l~~ 283 (729)
. +| .+..+++|+.|++++
T Consensus 192 ~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 192 D-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp B-CG-GGTTCTTCSEEEEEE
T ss_pred C-Ch-hhcCCCCCCEEEccC
Confidence 4 54 589999999998753
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.63 E-value=2.5e-15 Score=144.18 Aligned_cols=159 Identities=29% Similarity=0.393 Sum_probs=84.4
Q ss_pred CCcEEEEcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEe
Q 046589 105 LRVVYQVLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSL 184 (729)
Q Consensus 105 ~~~~~l~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L 184 (729)
.+++.++++++.+.. + +.+..+++|++|++++|++++..+ ++++++|++|++++|.+. .++ .++++++|++|++
T Consensus 40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l 113 (199)
T d2omxa2 40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTL 113 (199)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccccccccccccc
Confidence 345556666555542 2 124455666666666666655432 555666666666666554 222 2555666666666
Q ss_pred eccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccc
Q 046589 185 CSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSG 264 (729)
Q Consensus 185 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 264 (729)
++|.+... ..+.++++|++|++++|++.. ++ .+..+++|++|++.+|++++ ++ .+.++++|++|++++|++++
T Consensus 114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~-l~--~l~~l~~L~~L~ls~N~i~~ 186 (199)
T d2omxa2 114 FNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTD-LK--PLANLTTLERLDISSNKVSD 186 (199)
T ss_dssp CSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCC
T ss_pred cccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccC-Cc--cccCCCCCCEEECCCCCCCC
Confidence 66555422 235556666666666665542 22 35555666666666665552 22 25555666666666665553
Q ss_pred cCCccccCCCcCCe
Q 046589 265 NIPPEISHLKKLSD 278 (729)
Q Consensus 265 ~~p~~l~~l~~L~~ 278 (729)
++ .++.+++|+.
T Consensus 187 -i~-~l~~L~~L~~ 198 (199)
T d2omxa2 187 -IS-VLAKLTNLES 198 (199)
T ss_dssp -CG-GGGGCTTCSE
T ss_pred -Cc-cccCCCCCCc
Confidence 22 3444444443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.63 E-value=2e-15 Score=144.80 Aligned_cols=163 Identities=25% Similarity=0.334 Sum_probs=134.2
Q ss_pred EcCCCCCcCcCCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCC
Q 046589 111 VLRTQSLKGPVSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFT 190 (729)
Q Consensus 111 ~l~~~~l~~~~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~ 190 (729)
.++.+.+.+.++ ..+++++++|++++|.++.. +.+..+++|++|++++|++++. ++ ++++++|++|++++|.+.
T Consensus 24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~ 97 (199)
T d2omxa2 24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA 97 (199)
T ss_dssp HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred HhCCCCCCCccC--HHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCc-cc-ccCCcccccccccccccc
Confidence 455566666543 34678999999999999875 3578899999999999999854 33 999999999999999987
Q ss_pred ccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCCcCCCCCChhhhccCCCCCEEEcccccccccCCccc
Q 046589 191 GEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPPEI 270 (729)
Q Consensus 191 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 270 (729)
.++ .+.++++|++|++++|.+... ..+..+++|+.|++++|.+. .++ .+..+++|+.|++++|++++. + .+
T Consensus 98 -~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L~l~~n~l~~l-~-~l 168 (199)
T d2omxa2 98 -DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLNFSSNQVTDL-K-PL 168 (199)
T ss_dssp -CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCCC-G-GG
T ss_pred -ccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-ccc--cccccccccccccccccccCC-c-cc
Confidence 344 489999999999999998743 35889999999999999987 443 478899999999999999853 3 48
Q ss_pred cCCCcCCeeccccccccc
Q 046589 271 SHLKKLSDHYLGINQFTG 288 (729)
Q Consensus 271 ~~l~~L~~l~l~~n~l~~ 288 (729)
+.+++|+.+++++|+++.
T Consensus 169 ~~l~~L~~L~ls~N~i~~ 186 (199)
T d2omxa2 169 ANLTTLERLDISSNKVSD 186 (199)
T ss_dssp TTCTTCCEEECCSSCCCC
T ss_pred cCCCCCCEEECCCCCCCC
Confidence 889999999999888764
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=2.5e-14 Score=125.40 Aligned_cols=102 Identities=27% Similarity=0.353 Sum_probs=53.9
Q ss_pred cEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCC
Q 046589 132 RVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGN 211 (729)
Q Consensus 132 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 211 (729)
|+|||++|+++... .+.++++|++|++++|+|+ .+|+.++.+++|++|++++|.++. +| .+.++++|++|++++|
T Consensus 1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 45566666665432 2555556666666666665 445555555566666666665552 22 3555555555555555
Q ss_pred CCCCCC-ccccCCCCCCCeeeccCCcCC
Q 046589 212 GFNGTV-PIRLGELTRLQDLDLSDNLLS 238 (729)
Q Consensus 212 ~l~~~~-p~~l~~l~~L~~L~L~~N~l~ 238 (729)
+++... ...+..+++|++|++++|.++
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 555221 123445555555555555543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=2.8e-14 Score=125.04 Aligned_cols=104 Identities=28% Similarity=0.415 Sum_probs=91.2
Q ss_pred CEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCC
Q 046589 156 KMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDN 235 (729)
Q Consensus 156 ~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 235 (729)
|+|||++|+++ .++ .++.+++|++|++++|+++ .+|..++.+++|++|++++|.++. +| .++.+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 68999999998 555 4899999999999999998 678889999999999999999984 45 5899999999999999
Q ss_pred cCCCCCChhhhccCCCCCEEEcccccccc
Q 046589 236 LLSGSLTVSLFTNLQSLSYLDVSNNLLSG 264 (729)
Q Consensus 236 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 264 (729)
+++.......+..+++|++|++++|+++.
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~ 104 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence 99843334678899999999999999874
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.4e-14 Score=133.64 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=73.9
Q ss_pred CCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcE
Q 046589 126 FDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKS 205 (729)
Q Consensus 126 ~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 205 (729)
.+..++++|||++|+|+.+ +..+..+++|+.|||++|+|+ .++ .+..+++|++|++++|+++...+..+..+++|++
T Consensus 15 ~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~ 91 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 91 (162)
T ss_dssp ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence 3455667777777776665 334455666777777777766 332 3666666777777777666444444556666666
Q ss_pred EEccCCCCCCCCc-cccCCCCCCCeeeccCCcCCCCCC---hhhhccCCCCCEEE
Q 046589 206 LDFSGNGFNGTVP-IRLGELTRLQDLDLSDNLLSGSLT---VSLFTNLQSLSYLD 256 (729)
Q Consensus 206 L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~ 256 (729)
|++++|+++.... ..+..+++|++|++++|.++ ..+ ...+..+++|++||
T Consensus 92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred ceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence 6666666653211 24555666666666666654 222 12345555555554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.3e-14 Score=133.78 Aligned_cols=128 Identities=20% Similarity=0.209 Sum_probs=107.4
Q ss_pred cccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCC
Q 046589 148 QVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRL 227 (729)
Q Consensus 148 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 227 (729)
.|.+..+||+|||++|+|+ .+|..+..+++|++|+|++|+++. ++ .|..+++|++|++++|+++...+..+..+++|
T Consensus 13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89 (162)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence 4677889999999999998 567777889999999999999984 43 58999999999999999996555566789999
Q ss_pred CeeeccCCcCCCCCC-hhhhccCCCCCEEEcccccccccCCc----cccCCCcCCeec
Q 046589 228 QDLDLSDNLLSGSLT-VSLFTNLQSLSYLDVSNNLLSGNIPP----EISHLKKLSDHY 280 (729)
Q Consensus 228 ~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~l~ 280 (729)
++|++++|+++ .++ ...+..+++|++|++++|.++. .|. .+..+++|+.++
T Consensus 90 ~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 90 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred ccceecccccc-ccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence 99999999998 444 3568899999999999999974 332 467778887765
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.9e-14 Score=146.06 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=39.1
Q ss_pred CCCcEEEeeccCCCcc-CCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCeeeccCC-cCCCCCChhhhccCCCCCE
Q 046589 177 TWLETLSLCSNSFTGE-MPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQDLDLSDN-LLSGSLTVSLFTNLQSLSY 254 (729)
Q Consensus 177 ~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~ 254 (729)
.+|++|||++|.++.. ++..+.++++|++|+|+++.+++..+..++.+++|++|++++| .++..--...+..+++|++
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~ 125 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence 3455555555544321 2223445555555555555555444445555555555555553 2221000112234556666
Q ss_pred EEcccc
Q 046589 255 LDVSNN 260 (729)
Q Consensus 255 L~Ls~N 260 (729)
|+++++
T Consensus 126 L~ls~c 131 (284)
T d2astb2 126 LNLSWC 131 (284)
T ss_dssp EECCCC
T ss_pred cccccc
Confidence 666553
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.7e-14 Score=143.82 Aligned_cols=60 Identities=27% Similarity=0.259 Sum_probs=36.1
Q ss_pred CCCCcEEEcCCC-cCcccCCcccCCCCCCCEEEccCC-ccccccCcCccCCCCCCEEEcccc
Q 046589 405 LSQLEKLDLSSN-MLTGRIPKEIGNLRSIQILKLNSN-FFNGSIPMRLGDSTSLNILELGNN 464 (729)
Q Consensus 405 l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~N 464 (729)
+++|++|++++| .+++.....+..+++|++|+++++ .+++.....++.+++|+.|+++++
T Consensus 174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 455666666664 355555555666666666666663 455444445556666666666665
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.35 E-value=5.6e-14 Score=146.83 Aligned_cols=247 Identities=17% Similarity=0.152 Sum_probs=156.0
Q ss_pred hcCCCCCCCEEEccCCccee----cCCCCCcCCCCCcEEEecCCCCCCC----------CcccccCCCCCcEEEcCCCCC
Q 046589 326 WLGKWNQMESVWLNNNQFIG----RIPLEVGNCSMLKYIRLSNNKLSGS----------IPRELNDSESLVEINLDGNML 391 (729)
Q Consensus 326 ~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----------~p~~~~~l~~L~~L~L~~N~l 391 (729)
.+.....++.|+|++|.+.. .+...+...++|+.|+++++..... +...+...++|+.|+|++|.+
T Consensus 26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i 105 (344)
T d2ca6a1 26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 105 (344)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence 34455678888888887643 2333466678888888887765422 112345567888888888887
Q ss_pred CCCccccc-cccCCCCCCcEEEcCCCcCcccCCc-------------ccCCCCCCCEEEccCCccccc----cCcCccCC
Q 046589 392 SGTIEDVF-GRCTNLSQLEKLDLSSNMLTGRIPK-------------EIGNLRSIQILKLNSNFFNGS----IPMRLGDS 453 (729)
Q Consensus 392 ~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~-------------~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l 453 (729)
.......+ ..+...++|++|++++|.++..... .....+.|+.+++++|.+... +...+...
T Consensus 106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~ 185 (344)
T d2ca6a1 106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185 (344)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence 65422222 2234456788899988887532111 123567888999998887632 22334556
Q ss_pred CCCCEEEcccccCCcc-----CchhhhcCCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcc
Q 046589 454 TSLNILELGNNNLNGS-----IPEKIADLAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSG 528 (729)
Q Consensus 454 ~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g 528 (729)
+.|+.|+|++|.++.. +...+...++|+.|++++|.++..-...+. ..+..+++|+.|++++|.+++
T Consensus 186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~--------~~l~~~~~L~~L~Ls~n~i~~ 257 (344)
T d2ca6a1 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA--------IALKSWPNLRELGLNDCLLSA 257 (344)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH--------HHGGGCTTCCEEECTTCCCCH
T ss_pred hhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc--------ccccccccchhhhhhcCccCc
Confidence 7899999999988642 233466778899999999987642211111 112356778899999998864
Q ss_pred cCCchhhccccccccccccccc--cccCCceeeccCCcceeecc----ccc-ccccccccccCCcccccC
Q 046589 529 PIPKELGSCVVVLTGYIPRSLG--HLSCSVKLNLSGNKLSVLVP----TSF-GNLNGLTNLDLSYNEFDG 591 (729)
Q Consensus 529 ~~p~~~~~~~~ll~g~ip~~~~--~l~~L~~L~Ls~N~l~~~~p----~~~-~~l~~L~~L~Ls~N~l~g 591 (729)
.-...+. ..+. ....|++||+++|+|+.... ..+ .+.+.|+.|++++|+|..
T Consensus 258 ~g~~~l~-----------~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 258 RGAAAVV-----------DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHHHHHH-----------HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hhhHHHH-----------HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 3222221 1121 23568889999998875322 223 246788999999998865
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.27 E-value=2.2e-13 Score=142.22 Aligned_cols=195 Identities=18% Similarity=0.190 Sum_probs=114.1
Q ss_pred cCCCCCCCEEEccCCcceec----CCCCCcCCCCCcEEEecCCCCCCCCcc-------------cccCCCCCcEEEcCCC
Q 046589 327 LGKWNQMESVWLNNNQFIGR----IPLEVGNCSMLKYIRLSNNKLSGSIPR-------------ELNDSESLVEINLDGN 389 (729)
Q Consensus 327 l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~-------------~~~~l~~L~~L~L~~N 389 (729)
+...++|+.|++++|.+... +...+..+++|++|++++|.+...... .....+.|+.+.+++|
T Consensus 89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n 168 (344)
T d2ca6a1 89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 168 (344)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence 33445666666666665432 112233456677777777765421111 1124567777777777
Q ss_pred CCCCCcccccc-ccCCCCCCcEEEcCCCcCccc-----CCcccCCCCCCCEEEccCCccccc----cCcCccCCCCCCEE
Q 046589 390 MLSGTIEDVFG-RCTNLSQLEKLDLSSNMLTGR-----IPKEIGNLRSIQILKLNSNFFNGS----IPMRLGDSTSLNIL 459 (729)
Q Consensus 390 ~l~~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L 459 (729)
.+.......+. .+...+.|+.|+|++|.++.. +...+..+++|+.|++++|.++.. +...+...++|+.|
T Consensus 169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L 248 (344)
T d2ca6a1 169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248 (344)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence 76532222121 123455678888888877632 334566778888888888887532 33455667888888
Q ss_pred EcccccCCccCchh----hhc--CCCCCEEeCCCCcCcccccccccccccccCCCCcccCCCCCeEecCCCcCcc
Q 046589 460 ELGNNNLNGSIPEK----IAD--LAQLQFLDLSYNNLSRPILSKHSSYFHEVNIPDLSYSHNYRKFDLSYNMLSG 528 (729)
Q Consensus 460 ~Ls~N~l~~~~p~~----l~~--l~~L~~LdLs~N~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ldls~N~l~g 528 (729)
+|++|.+++.-... +.. ...|++||+++|+++......+..... ...++|+.+++++|++..
T Consensus 249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~-------~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-------EKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-------HHCTTCCEEECTTSBSCT
T ss_pred hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHH-------ccCCCCCEEECCCCcCCC
Confidence 88888887543333 332 356888888888886532222211100 134567888888888864
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1e-11 Score=113.20 Aligned_cols=103 Identities=19% Similarity=0.175 Sum_probs=48.3
Q ss_pred EEECCCCCCCCCCcccccCCCCCCEEeccCC-cCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCC
Q 046589 133 VLNLSQNLLFGQPSPQVSNLKRLKMLSLGEN-QLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGN 211 (729)
Q Consensus 133 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 211 (729)
.++.+++.+... |..+..+++|++|++++| .|+...+..|.++++|+.|+|++|+++...|.+|..+++|++|+|++|
T Consensus 12 ~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 12 GLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp CEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred eEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence 344444444332 223444455555555433 244333444555555555555555555444455555555555555555
Q ss_pred CCCCCCccccCCCCCCCeeeccCCcC
Q 046589 212 GFNGTVPIRLGELTRLQDLDLSDNLL 237 (729)
Q Consensus 212 ~l~~~~p~~l~~l~~L~~L~L~~N~l 237 (729)
+++ .+|.......+|++|+|++|.+
T Consensus 91 ~l~-~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 91 ALE-SLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp CCS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred CCc-ccChhhhccccccccccCCCcc
Confidence 555 2332222223455555555544
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.5e-11 Score=112.10 Aligned_cols=110 Identities=23% Similarity=0.155 Sum_probs=94.9
Q ss_pred CCCCCCEEeccCCcCcccCCccccCCCCCcEEEeecc-CCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCe
Q 046589 151 NLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSN-SFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQD 229 (729)
Q Consensus 151 ~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 229 (729)
.......++.+++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|+|++|+++...|..|..+++|++
T Consensus 6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 84 (156)
T d2ifga3 6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (156)
T ss_dssp CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence 3445667899999987 67888999999999999876 488777788999999999999999999877888999999999
Q ss_pred eeccCCcCCCCCChhhhccCCCCCEEEccccccc
Q 046589 230 LDLSDNLLSGSLTVSLFTNLQSLSYLDVSNNLLS 263 (729)
Q Consensus 230 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 263 (729)
|+|++|+++ .++...|..+ +|+.|+|++|.+.
T Consensus 85 L~Ls~N~l~-~l~~~~~~~~-~l~~L~L~~Np~~ 116 (156)
T d2ifga3 85 LNLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH 116 (156)
T ss_dssp EECCSSCCS-CCCSTTTCSC-CCCEEECCSSCCC
T ss_pred eeccCCCCc-ccChhhhccc-cccccccCCCccc
Confidence 999999998 7777777655 6999999999885
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.23 E-value=1.2e-13 Score=131.83 Aligned_cols=112 Identities=24% Similarity=0.267 Sum_probs=62.5
Q ss_pred ccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCCccccCCCCC
Q 046589 147 PQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTR 226 (729)
Q Consensus 147 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 226 (729)
.++..+++|++|+|++|+|+ .++ .+..+++|++|+|++|.++ .+|..+..+++|++|++++|+++. + ..+..+++
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~ 116 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVN 116 (198)
T ss_dssp HHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHH
T ss_pred hHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccccc
Confidence 34555556666666666655 233 3555566666666666655 344434444456666666666652 2 23555666
Q ss_pred CCeeeccCCcCCCCCC-hhhhccCCCCCEEEcccccccc
Q 046589 227 LQDLDLSDNLLSGSLT-VSLFTNLQSLSYLDVSNNLLSG 264 (729)
Q Consensus 227 L~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~Ls~N~l~~ 264 (729)
|++|++++|+++ .++ ...+..+++|++|++++|.+..
T Consensus 117 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 117 LRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred ccccccccchhc-cccccccccCCCccceeecCCCcccc
Confidence 666666666665 232 2445666666666666666553
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.20 E-value=5.3e-14 Score=134.29 Aligned_cols=131 Identities=27% Similarity=0.327 Sum_probs=104.7
Q ss_pred CCccCCCCCCCcEEECCCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCC
Q 046589 121 VSPLLFDLSKLRVLNLSQNLLFGQPSPQVSNLKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDM 200 (729)
Q Consensus 121 ~~~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l 200 (729)
++..+..+++|++|+|++|+|+.+. .+..+++|++|+|++|+|+ .+|..+..+++|++|++++|+++. + +.+.++
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l 114 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKL 114 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHH
T ss_pred hhhHHhcccccceeECcccCCCCcc--cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccc
Confidence 3456788999999999999998763 5888999999999999998 667666667789999999999984 3 458889
Q ss_pred CCCcEEEccCCCCCCCCc-cccCCCCCCCeeeccCCcCCCCCCh---------hhhccCCCCCEEE
Q 046589 201 KQLKSLDFSGNGFNGTVP-IRLGELTRLQDLDLSDNLLSGSLTV---------SLFTNLQSLSYLD 256 (729)
Q Consensus 201 ~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~---------~~~~~l~~L~~L~ 256 (729)
++|++|++++|+++.... ..+..+++|++|++++|.+....+. ..+..+++|+.||
T Consensus 115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 999999999999984322 4689999999999999987532111 1245677777775
|
| >d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: RIO1-like kinases domain: Rio2 serine protein kinase C-terminal domain species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.39 E-value=2.6e-08 Score=93.52 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=23.9
Q ss_pred ccCCCCCCcceEEEeecCCCCceeee
Q 046589 598 KNGIGGGGFGTVFKGTMPDGKTVAVK 623 (729)
Q Consensus 598 ~~~ig~g~~~~v~k~~~~~~~~~avk 623 (729)
.+.||+|+||+||+|...+|+.||||
T Consensus 5 g~~IG~G~~g~Vy~a~~~~g~~vAvK 30 (191)
T d1zara2 5 GKLMGEGKESAVFNCYSEKFGECVVK 30 (191)
T ss_dssp EEEEEECSSEEEEEEEETTTEEEEEE
T ss_pred CCEeeeCcceEEEEEECCCCCEEEEE
Confidence 45699999999999999899999999
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.2e-08 Score=93.11 Aligned_cols=104 Identities=22% Similarity=0.186 Sum_probs=59.6
Q ss_pred CCCCCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCcc--CCccccCCCCCcEEEccCCCCCCCCccccCCCCCCCe
Q 046589 152 LKRLKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGE--MPSELGDMKQLKSLDFSGNGFNGTVPIRLGELTRLQD 229 (729)
Q Consensus 152 l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 229 (729)
+..+..++..++... .++..+..+++|++|+|++|+++.. ++..+..+++|+.|+|++|.++...+..+....+|+.
T Consensus 41 ~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~ 119 (162)
T d1koha1 41 QNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119 (162)
T ss_dssp TTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSS
T ss_pred ccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccce
Confidence 333444444444332 3333445567777777777777643 2344566777777777777777433323334456777
Q ss_pred eeccCCcCCCCCCh------hhhccCCCCCEEE
Q 046589 230 LDLSDNLLSGSLTV------SLFTNLQSLSYLD 256 (729)
Q Consensus 230 L~L~~N~l~~~~~~------~~~~~l~~L~~L~ 256 (729)
|++++|.++..... ..+..+++|+.||
T Consensus 120 L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 120 LWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp CCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred eecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 77777777643321 2345567777665
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4.1e-08 Score=89.37 Aligned_cols=120 Identities=20% Similarity=0.047 Sum_probs=77.1
Q ss_pred CCEEeccCCcCcccCCccccCCCCCcEEEeeccCCCccCCccccCCCCCcEEEccCCCCCCCC--ccccCCCCCCCeeec
Q 046589 155 LKMLSLGENQLSGSLPSQLGVLTWLETLSLCSNSFTGEMPSELGDMKQLKSLDFSGNGFNGTV--PIRLGELTRLQDLDL 232 (729)
Q Consensus 155 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L 232 (729)
.+.||++++... ..+..+..+..++..++... .++..+.++++|++|+|++|+++..- +..+..+++|+.|+|
T Consensus 24 ~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~L 98 (162)
T d1koha1 24 QQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL 98 (162)
T ss_dssp SCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCC
T ss_pred hCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccc
Confidence 445555554422 12333444445555544433 44455567899999999999998543 345778899999999
Q ss_pred cCCcCCCCCChhhhccCCCCCEEEcccccccccCCc-------cccCCCcCCeec
Q 046589 233 SDNLLSGSLTVSLFTNLQSLSYLDVSNNLLSGNIPP-------EISHLKKLSDHY 280 (729)
Q Consensus 233 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~l~ 280 (729)
++|.++ .++.-.+....+|+.|++++|.+...... .+..+++|+.|+
T Consensus 99 s~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 99 SGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp TTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred ccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 999998 55543444556789999999988754432 144566666553
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.51 E-value=1.3e-05 Score=72.59 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=45.8
Q ss_pred ccCCCCCCEEeccCCcCcccCC----ccccCCCCCcEEEeeccCCCcc----CCccccCCCCCcEEEccCCCCCCC----
Q 046589 149 VSNLKRLKMLSLGENQLSGSLP----SQLGVLTWLETLSLCSNSFTGE----MPSELGDMKQLKSLDFSGNGFNGT---- 216 (729)
Q Consensus 149 ~~~l~~L~~L~Ls~N~l~~~~p----~~l~~L~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~---- 216 (729)
+...+.|++|+|++|.+..... +.+...+.|++|+|++|.++.. +-.++...+.|++|++++|.+...
T Consensus 40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~ 119 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 119 (167)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence 3444555556665555543211 2223345566666666665521 223455566677777776655422
Q ss_pred ---CccccCCCCCCCeeeccCC
Q 046589 217 ---VPIRLGELTRLQDLDLSDN 235 (729)
Q Consensus 217 ---~p~~l~~l~~L~~L~L~~N 235 (729)
+...+...++|+.|+++.+
T Consensus 120 ~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 120 EMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhCCCccEeeCcCC
Confidence 2233444567777777654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.47 E-value=1.6e-05 Score=71.89 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=63.1
Q ss_pred CCCCCCEEeccCC-cCccc----CCccccCCCCCcEEEeeccCCCc----cCCccccCCCCCcEEEccCCCCCCC----C
Q 046589 151 NLKRLKMLSLGEN-QLSGS----LPSQLGVLTWLETLSLCSNSFTG----EMPSELGDMKQLKSLDFSGNGFNGT----V 217 (729)
Q Consensus 151 ~l~~L~~L~Ls~N-~l~~~----~p~~l~~L~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~ 217 (729)
+.+.|++|+|+++ .++.. +-..+...++|++|+|++|.+.. .+...+...+.|++|+|++|.++.. +
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l 92 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 92 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence 3456666666653 34321 22334556677777777777752 2223445566777777777777632 2
Q ss_pred ccccCCCCCCCeeeccCCcCCCCCC-------hhhhccCCCCCEEEccccc
Q 046589 218 PIRLGELTRLQDLDLSDNLLSGSLT-------VSLFTNLQSLSYLDVSNNL 261 (729)
Q Consensus 218 p~~l~~l~~L~~L~L~~N~l~~~~~-------~~~~~~l~~L~~L~Ls~N~ 261 (729)
-..+...++|++|++++|.+. .+. ...+..-++|+.|+++.+.
T Consensus 93 ~~aL~~n~sL~~L~l~~n~~~-~~g~~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 93 LRSTLVTQSIVEFKADNQRQS-VLGNQVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHTTTTCCCSEEECCCCSSC-CCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhCCcCCEEECCCCcCC-CccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence 224555667777777777654 222 1234455677777776654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.65 E-value=0.00011 Score=66.08 Aligned_cols=16 Identities=6% Similarity=-0.047 Sum_probs=8.7
Q ss_pred hccCCCCCEEEccccc
Q 046589 246 FTNLQSLSYLDVSNNL 261 (729)
Q Consensus 246 ~~~l~~L~~L~Ls~N~ 261 (729)
+...++|+.|+++.+.
T Consensus 128 L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 128 LEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHCSSCCEEECCCSS
T ss_pred HHhCCCcCEEeCcCCC
Confidence 3445566666665543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.58 E-value=0.00013 Score=65.63 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=41.7
Q ss_pred cCCCCCCEEeccCCcCcccC----CccccCCCCCcEEEeeccCCCc----cCCccccCCCCCcEEEc--cCCCCCC----
Q 046589 150 SNLKRLKMLSLGENQLSGSL----PSQLGVLTWLETLSLCSNSFTG----EMPSELGDMKQLKSLDF--SGNGFNG---- 215 (729)
Q Consensus 150 ~~l~~L~~L~Ls~N~l~~~~----p~~l~~L~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L--s~N~l~~---- 215 (729)
...++|++|+|++|.++... -..+...+.++.+++++|.+.. .+...+...+.|+.++| ++|.+..
T Consensus 43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~ 122 (166)
T d1io0a_ 43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 122 (166)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence 34445555555555543221 1222334555555555555542 12234555566665444 3444432
Q ss_pred CCccccCCCCCCCeeeccCCc
Q 046589 216 TVPIRLGELTRLQDLDLSDNL 236 (729)
Q Consensus 216 ~~p~~l~~l~~L~~L~L~~N~ 236 (729)
.+...+...++|++|+++.+.
T Consensus 123 ~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 123 EIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCcCEEeCcCCC
Confidence 223334456677777766543
|