Citrus Sinensis ID: 046608
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | 2.2.26 [Sep-21-2011] | |||||||
| O22287 | 361 | Mannose-1-phosphate guany | yes | no | 1.0 | 0.709 | 0.863 | 1e-127 | |
| Q6Z9A3 | 361 | Probable mannose-1-phosph | yes | no | 1.0 | 0.709 | 0.855 | 1e-126 | |
| Q941T9 | 361 | Probable mannose-1-phosph | yes | no | 1.0 | 0.709 | 0.855 | 1e-126 | |
| Q84JH5 | 361 | Probable mannose-1-phosph | no | no | 1.0 | 0.709 | 0.851 | 1e-126 | |
| Q9M2S0 | 364 | Probable mannose-1-phosph | no | no | 1.0 | 0.703 | 0.822 | 1e-121 | |
| Q8H1Q7 | 331 | Probable mannose-1-phosph | no | no | 0.921 | 0.712 | 0.793 | 1e-106 | |
| Q54K39 | 359 | Mannose-1-phosphate guany | yes | no | 0.992 | 0.707 | 0.656 | 6e-96 | |
| Q9Y5P6 | 360 | Mannose-1-phosphate guany | yes | no | 0.996 | 0.708 | 0.625 | 2e-93 | |
| Q2YDJ9 | 360 | Mannose-1-phosphate guany | yes | no | 0.996 | 0.708 | 0.628 | 2e-93 | |
| P0C5I2 | 360 | Mannose-1-phosphate guany | yes | no | 0.996 | 0.708 | 0.617 | 2e-93 |
| >sp|O22287|GMPP1_ARATH Mannose-1-phosphate guanylyltransferase 1 OS=Arabidopsis thaliana GN=CYT1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/256 (86%), Positives = 239/256 (93%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS PKPLVDFANKPMILHQIEALKAVGV EVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAVGVDEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FE KLEIKITCSQETEPLGTAGPLALARDKL+D SGEPFFVLNSDVISEYPLK+
Sbjct: 61 LNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLLDGSGEPFFVLNSDVISEYPLKE 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
M+EFH+ HGGEASIMVTKVDEPSKYGVVVMEE+ G+VEKFVEKPK +VGNKINAGIYLLN
Sbjct: 121 MLEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGRVEKFVEKPKLYVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVLD+IEL+PTSIEKE FP+IA L+AMVLPGFWMDIGQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDKIELRPTSIEKETFPKIAAAQGLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
Query: 241 SSSKLATGSNIIGNVL 256
S +KL +G +I+GNVL
Sbjct: 241 SPAKLTSGPHIVGNVL 256
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Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Plays an essential role in plant growth and development and cell-wall architecture. Provides GDP-mannose, used for cell wall carbohydrate biosynthesis, protein N-glycosylation, as well as for the biosynthesis of the antioxidant ascorbate. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 3 |
| >sp|Q6Z9A3|GMPP3_ORYSJ Probable mannose-1-phosphate guanylyltransferase 3 OS=Oryza sativa subsp. japonica GN=Os08g0237200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1163), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/256 (85%), Positives = 238/256 (92%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS PKPLVDFANKPMILHQIEALK VGVTEVVLAINY+PEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVLAINYRPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FE KL I ITCSQETEPLGTAGPLALARDKL+D SGEPFFVLNSDVISEYP +
Sbjct: 61 LNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDGSGEPFFVLNSDVISEYPFAE 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
+I+FH+ HGGEA+IMVTKVDEPSKYGVVVMEE G VEKFVEKPK FVGNKINAGIYLLN
Sbjct: 121 LIKFHKNHGGEATIMVTKVDEPSKYGVVVMEEATGMVEKFVEKPKIFVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVLDRIELKPTSIEKEVFP I+ + KLFAMVLPGFWMD+GQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDRIELKPTSIEKEVFPRISADAKLFAMVLPGFWMDVGQPRDYITGLRLYLDSLRKR 240
Query: 241 SSSKLATGSNIIGNVL 256
S+++LATG++I+GNVL
Sbjct: 241 SANRLATGAHIVGNVL 256
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Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q941T9|GMPP2_ORYSJ Probable mannose-1-phosphate guanylyltransferase 2 OS=Oryza sativa subsp. japonica GN=Os01g0847200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/256 (85%), Positives = 238/256 (92%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS PKPLVDFANKPMILHQIEALK VGVTEVVLAINY+PEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVLAINYRPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FE KL I ITCSQETEPLGTAGPLALARDKL+D SGEPFFVLNSDVISEYP +
Sbjct: 61 LNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDGSGEPFFVLNSDVISEYPFAE 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
+I+FH+ HGGEA+IMVTKVDEPSKYGVVVMEE G VEKFVEKPK FVGNKINAGIYLLN
Sbjct: 121 LIKFHKSHGGEATIMVTKVDEPSKYGVVVMEEVTGMVEKFVEKPKIFVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVLDRIELKPTSIEKEVFP IA + KLFA+VLPGFWMD+GQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDRIELKPTSIEKEVFPRIASDAKLFALVLPGFWMDVGQPRDYITGLRLYLDSLRKR 240
Query: 241 SSSKLATGSNIIGNVL 256
S+++LATG++I+GNVL
Sbjct: 241 STNRLATGAHIVGNVL 256
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Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q84JH5|GMPP1_ORYSJ Probable mannose-1-phosphate guanylyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os03g0268400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1160), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/256 (85%), Positives = 237/256 (92%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLVDF NKPMILHQIEALK VGVTEVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFGNKPMILHQIEALKEVGVTEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FE KL IKITCSQETEPLGTAGPLALARDKL D SG+PFFVLNSDVISEYP +
Sbjct: 61 LNFLKDFESKLGIKITCSQETEPLGTAGPLALARDKLADGSGDPFFVLNSDVISEYPFAE 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
+I+FH+ HGGEA+IMVTKVDEPSKYGVVVME+ KVE+FVEKPK FVGNKINAGIYLLN
Sbjct: 121 LIQFHKSHGGEATIMVTKVDEPSKYGVVVMEDETDKVERFVEKPKVFVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVLDRIELKPTSIEKEVFP IA +N LFAMVLPGFWMDIGQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDRIELKPTSIEKEVFPRIAADNGLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
Query: 241 SSSKLATGSNIIGNVL 256
+ +KLA+G++++GNVL
Sbjct: 241 APAKLASGAHVLGNVL 256
|
Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q9M2S0|GMPP2_ARATH Probable mannose-1-phosphate guanylyltransferase 2 OS=Arabidopsis thaliana GN=At3g55590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 433 bits (1114), Expect = e-121, Method: Compositional matrix adjust.
Identities = 213/259 (82%), Positives = 233/259 (89%), Gaps = 3/259 (1%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE-- 58
MKALILVGGFGTRLRPLTLS+PKPLVDFANKPMILHQIEALKA+GV EVVLAINY+PE
Sbjct: 1 MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQL 60
Query: 59 -VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP 117
VM F + E L IKITCSQETEPLGTAGPLALARDKL+D SG+PFFVLNSDVIS+YP
Sbjct: 61 LVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYP 120
Query: 118 LKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIY 177
L++MI FH HGGEASIMVTKVDEPSKYGVVVMEE G+VE+FVEKPK FVGNKINAGIY
Sbjct: 121 LEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIY 180
Query: 178 LLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFL 237
LLNPSVLDRIEL+PTSIEKE+FP+IA KL+AM+LPGFWMDIGQP+DYITGLRLYLD L
Sbjct: 181 LLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSL 240
Query: 238 QKNSSSKLATGSNIIGNVL 256
+K S SKLATG +I+GNVL
Sbjct: 241 RKKSPSKLATGPHILGNVL 259
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Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q8H1Q7|GMPP3_ARATH Probable mannose-1-phosphate guanylyltransferase 3 OS=Arabidopsis thaliana GN=At4g30570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/237 (79%), Positives = 213/237 (89%), Gaps = 1/237 (0%)
Query: 21 VPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQ 79
+PKPLVDF NKPMILHQIEALK GVTEVVLAIN+Q PEVMLNF+KE+EKKLEIKIT SQ
Sbjct: 1 MPKPLVDFGNKPMILHQIEALKGAGVTEVVLAINHQQPEVMLNFVKEYEKKLEIKITFSQ 60
Query: 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV 139
ETEPLGTAGPLALARDKL+D+SG+PFFVLNSDVI EYPL +MIEFH+ + EASIMVT+V
Sbjct: 61 ETEPLGTAGPLALARDKLVDESGQPFFVLNSDVICEYPLLEMIEFHKTNRAEASIMVTEV 120
Query: 140 DEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVF 199
D+PSKYGVVV EE +VE FVEKPK+FVGNKINAGIYLL+PSVLDRIEL+ TSIEKE+F
Sbjct: 121 DDPSKYGVVVTEEGTARVESFVEKPKHFVGNKINAGIYLLSPSVLDRIELRRTSIEKEIF 180
Query: 200 PEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKNSSSKLATGSNIIGNVL 256
P+IA E KL+AMVLPGFWMDIGQPKDYITG R+YL+ L++ + +LATG NIIGNVL
Sbjct: 181 PKIASEKKLYAMVLPGFWMDIGQPKDYITGQRMYLNSLREKTPQELATGDNIIGNVL 237
|
Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q54K39|GMPPB_DICDI Mannose-1-phosphate guanyltransferase beta OS=Dictyostelium discoideum GN=gmppB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (898), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 168/256 (65%), Positives = 211/256 (82%), Gaps = 2/256 (0%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS PKP+V+FANK MILHQIEAL +GV EVVLA+NY+P++M
Sbjct: 1 MKALILVGGFGTRLRPLTLSKPKPIVEFANKAMILHQIEALCKIGVNEVVLAVNYRPQLM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+L+ +EKKL IKI+ S ET PLGTAGPLALARD L D GEPFFVLNSD+I ++P
Sbjct: 61 SQYLEPYEKKLGIKISYSHETVPLGTAGPLALARDLLND--GEPFFVLNSDIICDFPFAD 118
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
++ FH+ HGGE +IMVTKV+EPSKYGVVV +E G++ KFVEKP+ +VGNKINAG+Y+ N
Sbjct: 119 LLAFHKSHGGEGTIMVTKVEEPSKYGVVVYKEENGQILKFVEKPQVYVGNKINAGVYIFN 178
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
P++LDRI+ KPTSIEKE+FP +A +++L+ M L GFWMD+GQPKD+++G+ LYL+ L+
Sbjct: 179 PTILDRIQPKPTSIEKEIFPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLKSK 238
Query: 241 SSSKLATGSNIIGNVL 256
LATG+ IIG VL
Sbjct: 239 QPELLATGNGIIGPVL 254
|
Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q9Y5P6|GMPPB_HUMAN Mannose-1-phosphate guanyltransferase beta OS=Homo sapiens GN=GMPPB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 342 bits (876), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/256 (62%), Positives = 207/256 (80%), Gaps = 1/256 (0%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS PKPLVDF NKP++LHQ+EAL A GV V+LA++Y +V+
Sbjct: 1 MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+K E++L I+I+ S E EPLGTAGPLALARD L+ ++ +PFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
M++FHR HG E SI+VTKV+EPSKYGVVV E G++ +FVEKP+ FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
P+VL RI+L+PTSIEKEVFP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PAVLQRIQLQPTSIEKEVFPIMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239
Query: 241 SSSKLATGSNIIGNVL 256
+L +G I+GNVL
Sbjct: 240 QPERLCSGPGIVGNVL 255
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|Q2YDJ9|GMPPB_BOVIN Mannose-1-phosphate guanyltransferase beta OS=Bos taurus GN=GMPPB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (876), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 161/256 (62%), Positives = 207/256 (80%), Gaps = 1/256 (0%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS+PKPL DF NKP++LHQ+EAL A GV V+LA++Y +V+
Sbjct: 1 MKALILVGGYGTRLRPLTLSIPKPLADFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+K E+KL I+I+ S E EPLGTAGPLALARD L+ ++ +PFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQKLGIRISMSHEEEPLGTAGPLALARD-LLCETADPFFVLNSDVICDFPFEA 119
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
M++FHR HG E SI+VTKV+EPSKYGVVV E G+V +FVEKP+ FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRVHRFVEKPQVFVSNKINAGVYILS 179
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVL RI+L+PTSIEKE+FP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PSVLRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLKSLRQK 239
Query: 241 SSSKLATGSNIIGNVL 256
+L +G I+GNVL
Sbjct: 240 HPEQLCSGPGIVGNVL 255
|
Bos taurus (taxid: 9913) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
| >sp|P0C5I2|GMPPB_PIG Mannose-1-phosphate guanyltransferase beta OS=Sus scrofa GN=GMPPB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 341 bits (875), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 158/256 (61%), Positives = 208/256 (81%), Gaps = 1/256 (0%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS+PKPLVDF NKP++LHQ+EAL + GV V+LA++Y +++
Sbjct: 1 MKALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALASAGVDHVILAVSYMSQML 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+K E++L I+I+ S E EPLGTAGPLALARD L+ ++ EPFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETAEPFFVLNSDVICDFPFQA 119
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
M++FHR HG E SI+VTKV+EPSKYGVVV E G++ +FVEKP+ FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
P+VL RI+L+PTSIEKE+FP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PAVLQRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239
Query: 241 SSSKLATGSNIIGNVL 256
+L +G I+GNVL
Sbjct: 240 QPEQLCSGPGIVGNVL 255
|
Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | ||||||
| 224087493 | 361 | predicted protein [Populus trichocarpa] | 1.0 | 0.709 | 0.929 | 1e-135 | |
| 224098483 | 361 | predicted protein [Populus trichocarpa] | 1.0 | 0.709 | 0.910 | 1e-133 | |
| 218117841 | 361 | GDP-D-mannose pyrophosphorylase [Prunus | 1.0 | 0.709 | 0.906 | 1e-132 | |
| 218533669 | 361 | GDP-mannose pyrophosphorylase [Carica pa | 1.0 | 0.709 | 0.910 | 1e-132 | |
| 80973464 | 361 | GDP-mannose pyrophosphorylase [Malpighia | 1.0 | 0.709 | 0.898 | 1e-132 | |
| 224831509 | 361 | GMP [Carica papaya] | 1.0 | 0.709 | 0.906 | 1e-132 | |
| 224112691 | 361 | predicted protein [Populus trichocarpa] | 1.0 | 0.709 | 0.906 | 1e-131 | |
| 225449380 | 361 | PREDICTED: mannose-1-phosphate guanylylt | 1.0 | 0.709 | 0.894 | 1e-131 | |
| 357492373 | 361 | Mannose-1-phosphate guanyltransferase [M | 1.0 | 0.709 | 0.898 | 1e-131 | |
| 224038262 | 361 | GDP-D-mannose pyrophosphorylase [Actinid | 1.0 | 0.709 | 0.898 | 1e-131 |
| >gi|224087493|ref|XP_002308180.1| predicted protein [Populus trichocarpa] gi|222854156|gb|EEE91703.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust.
Identities = 238/256 (92%), Positives = 248/256 (96%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA+GVTEVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVTEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLKE+EK+LEIKITCSQETEPLGTAGPLALARDKLIDDSG PFFVLNSDVISEYPLKQ
Sbjct: 61 LNFLKEYEKRLEIKITCSQETEPLGTAGPLALARDKLIDDSGAPFFVLNSDVISEYPLKQ 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
MIEFH+GHGGEASIMVTKVDEPSKYGVV+MEET GKVEKFVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIEFHKGHGGEASIMVTKVDEPSKYGVVLMEETSGKVEKFVEKPKIFVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVLDRIEL+PTSIEKEVFP+IA ENKLFAMVLPGFWMDIGQPKDY+TGLRLYLD L+K
Sbjct: 181 PSVLDRIELRPTSIEKEVFPKIAAENKLFAMVLPGFWMDIGQPKDYVTGLRLYLDSLRKM 240
Query: 241 SSSKLATGSNIIGNVL 256
SS KLATG NI+GNVL
Sbjct: 241 SSPKLATGPNIVGNVL 256
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224098483|ref|XP_002311190.1| predicted protein [Populus trichocarpa] gi|222851010|gb|EEE88557.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/256 (91%), Positives = 248/256 (96%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLV+FANKPMILHQIEALKA+GVTEVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAIGVTEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLKEFE KLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ
Sbjct: 61 LNFLKEFETKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
MI+FH+ HGGEASIMVTKVDEPSKYGVVVMEE+ GKVE+FVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIDFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVERFVEKPKIFVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSV+DRIEL+PTSIEKEVFP+IA +NKL+AMVLPGFWMDIGQP+DYI GLRLYLD L+KN
Sbjct: 181 PSVIDRIELRPTSIEKEVFPKIAADNKLYAMVLPGFWMDIGQPRDYIVGLRLYLDSLKKN 240
Query: 241 SSSKLATGSNIIGNVL 256
SSSKLATG +I+GNVL
Sbjct: 241 SSSKLATGPHIVGNVL 256
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218117841|dbj|BAH03298.1| GDP-D-mannose pyrophosphorylase [Prunus persica] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/256 (90%), Positives = 245/256 (95%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLV+FANKPMILHQIEALKA+GV+EVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAIGVSEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ FLKEFE K+ IKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP KQ
Sbjct: 61 MTFLKEFETKVGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFKQ 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
MIEFH+ HGGEASIMVTKVDEPSKYGVVVMEE+ GKV+KFVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGKVQKFVEKPKLFVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVLDRIEL+PTSIEKEVFP IA ENKLFAMVLPGFWMDIGQP+DYITGLRLYLD L+KN
Sbjct: 181 PSVLDRIELRPTSIEKEVFPNIAAENKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKN 240
Query: 241 SSSKLATGSNIIGNVL 256
SSSKLA GSN++GNVL
Sbjct: 241 SSSKLARGSNVVGNVL 256
|
Source: Prunus persica Species: Prunus persica Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218533669|gb|ACK87007.1| GDP-mannose pyrophosphorylase [Carica papaya] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/256 (91%), Positives = 246/256 (96%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS+PKPLVDFANKPMILHQIEALKA GV+EV+LAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSMPKPLVDFANKPMILHQIEALKAAGVSEVILAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID+SGEPFFVLNSDVISEYPL +
Sbjct: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDESGEPFFVLNSDVISEYPLTE 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
MI+FH HGGEASIMVTKVDEPSKYGVVV+EE GKVEKFVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIKFHNSHGGEASIMVTKVDEPSKYGVVVIEEATGKVEKFVEKPKIFVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVLDRI+L+PTSIEKEVFPEIA ENKL+AMVLPGFWMDIGQPKDYITGLRLYLD L+K
Sbjct: 181 PSVLDRIQLRPTSIEKEVFPEIAAENKLYAMVLPGFWMDIGQPKDYITGLRLYLDSLRKT 240
Query: 241 SSSKLATGSNIIGNVL 256
SSSKLATGS+I+GNVL
Sbjct: 241 SSSKLATGSHIVGNVL 256
|
Source: Carica papaya Species: Carica papaya Genus: Carica Family: Caricaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|80973464|gb|ABB53473.1| GDP-mannose pyrophosphorylase [Malpighia glabra] gi|161898831|gb|ABX80393.1| GDP-mannose pyrophosphorylase [Malpighia glabra] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/256 (89%), Positives = 248/256 (96%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS PKPLV+FANKPMILHQIEALKA+GVTEVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKPLVEFANKPMILHQIEALKAIGVTEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FEKKL+IKITCSQETEPLGTAGPLALARDKLID+SGEPFFVLNSDVISEYPLK+
Sbjct: 61 LNFLKDFEKKLDIKITCSQETEPLGTAGPLALARDKLIDESGEPFFVLNSDVISEYPLKE 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
MIEFH+ HGGEASIMVTKVDEPSKYGVVVMEE+ G+VE+FVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIEFHKNHGGEASIMVTKVDEPSKYGVVVMEESTGRVERFVEKPKIFVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVLDRIEL+PTSIEKEVFP+IA +N L+AMVLPGFWMDIGQPKDYITGLRLYLD L+K
Sbjct: 181 PSVLDRIELRPTSIEKEVFPKIAADNSLYAMVLPGFWMDIGQPKDYITGLRLYLDSLRKK 240
Query: 241 SSSKLATGSNIIGNVL 256
SS+KLATGSN++GNVL
Sbjct: 241 SSTKLATGSNVVGNVL 256
|
Source: Malpighia glabra Species: Malpighia glabra Genus: Malpighia Family: Malpighiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224831509|gb|ACN66754.1| GMP [Carica papaya] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/256 (90%), Positives = 245/256 (95%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS+PKPLVDFANKPMILHQIEALKA GV+EV+LAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSMPKPLVDFANKPMILHQIEALKAAGVSEVILAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID+SGEPFFVLNSDVISEYPL +
Sbjct: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDESGEPFFVLNSDVISEYPLTE 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
MI+FH HGGEASIMVTKVDEPSKYGVVV+EE KVEKFVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIKFHNSHGGEASIMVTKVDEPSKYGVVVIEEATRKVEKFVEKPKIFVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVLDRI+L+PTSIEKEVFPEIA ENKL+AMVLPGFWMDIGQPKDYITGLRLYLD L+K
Sbjct: 181 PSVLDRIQLRPTSIEKEVFPEIAAENKLYAMVLPGFWMDIGQPKDYITGLRLYLDSLRKT 240
Query: 241 SSSKLATGSNIIGNVL 256
SSSKLATGS+I+GNVL
Sbjct: 241 SSSKLATGSHIVGNVL 256
|
Source: Carica papaya Species: Carica papaya Genus: Carica Family: Caricaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112691|ref|XP_002316262.1| predicted protein [Populus trichocarpa] gi|222865302|gb|EEF02433.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/256 (90%), Positives = 246/256 (96%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLV+FANKPMILHQIEALKA+GVTEVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAIGVTEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FE KLEIKITCSQETEPLGTAGPLALARDKLID SGEPFFVLNSDVISEYPLKQ
Sbjct: 61 LNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLIDGSGEPFFVLNSDVISEYPLKQ 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
MIEFH+ HGGEASIMVTKVDEPSKYGVVV EE+ GKVE+FVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIEFHKVHGGEASIMVTKVDEPSKYGVVVTEESTGKVERFVEKPKIFVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVLDRIEL+PTSIEKEVFP+IA E+KL+AMVLPGFWMDIGQP+DYITGLRLYLD L+KN
Sbjct: 181 PSVLDRIELRPTSIEKEVFPKIAAEDKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKN 240
Query: 241 SSSKLATGSNIIGNVL 256
SSSKLA G +I+GNVL
Sbjct: 241 SSSKLANGPHIVGNVL 256
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449380|ref|XP_002282422.1| PREDICTED: mannose-1-phosphate guanylyltransferase 1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/256 (89%), Positives = 246/256 (96%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGV+EVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVSEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLKEFE KL I ITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP K+
Sbjct: 61 LNFLKEFEAKLGITITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFKE 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
MIEFH+ HGGEASIMVTKVDEPSKYGVVVMEE++G+V++FVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESIGRVDRFVEKPKLFVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVLDRIEL+PTSIEKEVFP+IA E KL+AMVLPGFWMDIGQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
Query: 241 SSSKLATGSNIIGNVL 256
SSSKLA+G++I+GNVL
Sbjct: 241 SSSKLASGAHIVGNVL 256
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357492373|ref|XP_003616475.1| Mannose-1-phosphate guanyltransferase [Medicago truncatula] gi|49246467|gb|AAT58365.1| GMPase [Medicago sativa] gi|355517810|gb|AES99433.1| Mannose-1-phosphate guanyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/256 (89%), Positives = 244/256 (95%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA GVTEVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKATGVTEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FE KL I I+CSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS+YPLK+
Sbjct: 61 LNFLKDFEAKLGITISCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISDYPLKE 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
MIEFH+ HGGEASIMVTKVDEPSKYGVVVMEET G+VEKFVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIEFHKSHGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVLDRIEL+PTSIEKE+FP+IA E KL+AMVLPGFWMDIGQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDRIELRPTSIEKEIFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
Query: 241 SSSKLATGSNIIGNVL 256
SSSKLA GSNI+GNV+
Sbjct: 241 SSSKLAGGSNIVGNVI 256
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224038262|gb|ACN38266.1| GDP-D-mannose pyrophosphorylase [Actinidia latifolia] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/256 (89%), Positives = 246/256 (96%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA+GV+EVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVSEVVLAINYQPEVM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LNFLK+FE KL IKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLK+
Sbjct: 61 LNFLKDFETKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKE 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
MIEFH+ HGGEASIMVTKVDEPSKYGVVVMEE+ G+VEKFVEKPK FVGNKINAGIYLLN
Sbjct: 121 MIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGQVEKFVEKPKLFVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVLDRIEL+PTSIEKE+FP+IA E KL+AMVLPGFWMDIGQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDRIELRPTSIEKEIFPKIAGEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
Query: 241 SSSKLATGSNIIGNVL 256
+SSKLATG +I+GNVL
Sbjct: 241 TSSKLATGPHIVGNVL 256
|
Source: Actinidia latifolia Species: Actinidia latifolia Genus: Actinidia Family: Actinidiaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 256 | ||||||
| TAIR|locus:2005504 | 361 | CYT1 "CYTOKINESIS DEFECTIVE 1" | 1.0 | 0.709 | 0.820 | 5.5e-109 | |
| TAIR|locus:2100001 | 364 | AT3G55590 [Arabidopsis thalian | 1.0 | 0.703 | 0.799 | 1.2e-106 | |
| TAIR|locus:2118671 | 331 | AT4G30570 [Arabidopsis thalian | 0.921 | 0.712 | 0.746 | 1.4e-89 | |
| DICTYBASE|DDB_G0287619 | 359 | gmppB "mannose-1-phosphate gua | 0.992 | 0.707 | 0.625 | 2.4e-83 | |
| SGD|S000002213 | 361 | PSA1 "GDP-mannose pyrophosphor | 0.996 | 0.706 | 0.618 | 2.4e-83 | |
| UNIPROTKB|F1N7H5 | 360 | GMPPB "Mannose-1-phosphate gua | 0.996 | 0.708 | 0.609 | 1.2e-81 | |
| UNIPROTKB|E2R2I6 | 360 | GMPPB "Uncharacterized protein | 0.996 | 0.708 | 0.601 | 1.2e-81 | |
| UNIPROTKB|F6X690 | 387 | GMPPB "Uncharacterized protein | 0.996 | 0.658 | 0.601 | 1.2e-81 | |
| UNIPROTKB|Q9Y5P6 | 360 | GMPPB "Mannose-1-phosphate gua | 0.996 | 0.708 | 0.605 | 2e-81 | |
| UNIPROTKB|F1SPR4 | 360 | GMPPB "Mannose-1-phosphate gua | 0.996 | 0.708 | 0.597 | 2.5e-81 |
| TAIR|locus:2005504 CYT1 "CYTOKINESIS DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1077 (384.2 bits), Expect = 5.5e-109, P = 5.5e-109
Identities = 210/256 (82%), Positives = 227/256 (88%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS PKPLVDFANKPMILHQIEALKAVGV EVVLAINYQPEVM
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAVGVDEVVLAINYQPEVM 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LN TCSQETEPLGTAGPLALARDKL+D SGEPFFVLNSDVISEYPLK+
Sbjct: 61 LNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLLDGSGEPFFVLNSDVISEYPLKE 120
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
M+EFH+ HGGEASIMVTKVDEPSKYGVVVMEE+ G+VEKFVEKPK +VGNKINAGIYLLN
Sbjct: 121 MLEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGRVEKFVEKPKLYVGNKINAGIYLLN 180
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVLD+IEL+PTSIEKE FP+IA L+AMVLPGFWMDIGQP+DYITGLRLYLD L+K
Sbjct: 181 PSVLDKIELRPTSIEKETFPKIAAAQGLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 240
Query: 241 SSSKLATGSNIIGNVL 256
S +KL +G +I+GNVL
Sbjct: 241 SPAKLTSGPHIVGNVL 256
|
|
| TAIR|locus:2100001 AT3G55590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 207/259 (79%), Positives = 226/259 (87%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE-- 58
MKALILVGGFGTRLRPLTLS+PKPLVDFANKPMILHQIEALKA+GV EVVLAINY+PE
Sbjct: 1 MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQL 60
Query: 59 -VMLNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP 117
VM TCSQETEPLGTAGPLALARDKL+D SG+PFFVLNSDVIS+YP
Sbjct: 61 LVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYP 120
Query: 118 LKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIY 177
L++MI FH HGGEASIMVTKVDEPSKYGVVVMEE G+VE+FVEKPK FVGNKINAGIY
Sbjct: 121 LEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIY 180
Query: 178 LLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFL 237
LLNPSVLDRIEL+PTSIEKE+FP+IA KL+AM+LPGFWMDIGQP+DYITGLRLYLD L
Sbjct: 181 LLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSL 240
Query: 238 QKNSSSKLATGSNIIGNVL 256
+K S SKLATG +I+GNVL
Sbjct: 241 RKKSPSKLATGPHILGNVL 259
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| TAIR|locus:2118671 AT4G30570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
Identities = 177/237 (74%), Positives = 200/237 (84%)
Query: 21 VPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNXXXXXXXXXXXXXTCSQ 79
+PKPLVDF NKPMILHQIEALK GVTEVVLAIN+Q PEVMLN T SQ
Sbjct: 1 MPKPLVDFGNKPMILHQIEALKGAGVTEVVLAINHQQPEVMLNFVKEYEKKLEIKITFSQ 60
Query: 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV 139
ETEPLGTAGPLALARDKL+D+SG+PFFVLNSDVI EYPL +MIEFH+ + EASIMVT+V
Sbjct: 61 ETEPLGTAGPLALARDKLVDESGQPFFVLNSDVICEYPLLEMIEFHKTNRAEASIMVTEV 120
Query: 140 DEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVF 199
D+PSKYGVVV EE +VE FVEKPK+FVGNKINAGIYLL+PSVLDRIEL+ TSIEKE+F
Sbjct: 121 DDPSKYGVVVTEEGTARVESFVEKPKHFVGNKINAGIYLLSPSVLDRIELRRTSIEKEIF 180
Query: 200 PEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKNSSSKLATGSNIIGNVL 256
P+IA E KL+AMVLPGFWMDIGQPKDYITG R+YL+ L++ + +LATG NIIGNVL
Sbjct: 181 PKIASEKKLYAMVLPGFWMDIGQPKDYITGQRMYLNSLREKTPQELATGDNIIGNVL 237
|
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| DICTYBASE|DDB_G0287619 gmppB "mannose-1-phosphate guanylyltransferase beta" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 160/256 (62%), Positives = 202/256 (78%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGGFGTRLRPLTLS PKP+V+FANK MILHQIEAL +GV EVVLA+NY+P++M
Sbjct: 1 MKALILVGGFGTRLRPLTLSKPKPIVEFANKAMILHQIEALCKIGVNEVVLAVNYRPQLM 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ S ET PLGTAGPLALARD L++D GEPFFVLNSD+I ++P
Sbjct: 61 SQYLEPYEKKLGIKISYSHETVPLGTAGPLALARD-LLND-GEPFFVLNSDIICDFPFAD 118
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
++ FH+ HGGE +IMVTKV+EPSKYGVVV +E G++ KFVEKP+ +VGNKINAG+Y+ N
Sbjct: 119 LLAFHKSHGGEGTIMVTKVEEPSKYGVVVYKEENGQILKFVEKPQVYVGNKINAGVYIFN 178
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
P++LDRI+ KPTSIEKE+FP +A +++L+ M L GFWMD+GQPKD+++G+ LYL+ L+
Sbjct: 179 PTILDRIQPKPTSIEKEIFPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLKSK 238
Query: 241 SSSKLATGSNIIGNVL 256
LATG+ IIG VL
Sbjct: 239 QPELLATGNGIIGPVL 254
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| SGD|S000002213 PSA1 "GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase)" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 159/257 (61%), Positives = 197/257 (76%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK LILVGG+GTRLRPLTL+VPKPLV+F N+PMILHQIEAL GVT++VLA+NY+PEVM
Sbjct: 1 MKGLILVGGYGTRLRPLTLTVPKPLVEFGNRPMILHQIEALANAGVTDIVLAVNYRPEVM 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ T S ETEPLGTAGPL LA D L D+ PFFVLNSDVI EYP K+
Sbjct: 61 VETLKKYEKEYGVNITFSVETEPLGTAGPLKLAEDVLKKDNS-PFFVLNSDVICEYPFKE 119
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVME-ETMGKVEKFVEKPKNFVGNKINAGIYLL 179
+ +FH+ HGG+ +I+ TKVDEPSKYGV+V + T +++FVEKPK FVGN+INAG+Y+L
Sbjct: 120 LADFHKAHGGKGTIVATKVDEPSKYGVIVHDIATPNLIDRFVEKPKEFVGNRINAGLYIL 179
Query: 180 NPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK 239
NP V+D IE+KPTSIEKE FP + E +L++ L GFWMD+GQPKD+++G LYL+ L K
Sbjct: 180 NPEVIDLIEMKPTSIEKETFPILVEEKQLYSFDLEGFWMDVGQPKDFLSGTVLYLNSLAK 239
Query: 240 NSSSKLATGSNIIGNVL 256
KLATG+NI+GN L
Sbjct: 240 RQPKKLATGANIVGNAL 256
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| UNIPROTKB|F1N7H5 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 156/256 (60%), Positives = 199/256 (77%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS+PKPLVDF NKP++LHQ+EAL A GV V+LA++Y +V+
Sbjct: 1 MKALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ S E EPLGTAGPLALARD L+ ++ +PFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQKLGIRISMSHEEEPLGTAGPLALARD-LLCETADPFFVLNSDVICDFPFEA 119
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
M++FHR HG E SI+VTKV+EPSKYGVVV E G+V +FVEKP+ FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRVHRFVEKPQVFVSNKINAGVYILS 179
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
PSVL RI+L+PTSIEKE+FP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PSVLRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239
Query: 241 SSSKLATGSNIIGNVL 256
+L +G I+GNVL
Sbjct: 240 HPEQLCSGPGIVGNVL 255
|
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| UNIPROTKB|E2R2I6 GMPPB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 154/256 (60%), Positives = 199/256 (77%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS+PKPLVDF NKP++LHQ+EAL A GV V+LA++Y +++
Sbjct: 1 MKALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQML 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ S E EPLGTAGPLALARD L+ ++ +PFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
M++FHR HG E SI+VTKV+EPSKYGVVV E G++ +FVEKP+ FV NKINAG+Y+LN
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILN 179
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
P+VL RI+L+PTSIEKE+FP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PTVLRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239
Query: 241 SSSKLATGSNIIGNVL 256
+L +G I+GNVL
Sbjct: 240 QPEQLCSGPGIVGNVL 255
|
|
| UNIPROTKB|F6X690 GMPPB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 154/256 (60%), Positives = 199/256 (77%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS+PKPLVDF NKP++LHQ+EAL A GV V+LA++Y +++
Sbjct: 1 MKALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQML 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ S E EPLGTAGPLALARD L+ ++ +PFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
M++FHR HG E SI+VTKV+EPSKYGVVV E G++ +FVEKP+ FV NKINAG+Y+LN
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILN 179
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
P+VL RI+L+PTSIEKE+FP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PTVLRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239
Query: 241 SSSKLATGSNIIGNVL 256
+L +G I+GNVL
Sbjct: 240 QPEQLCSGPGIVGNVL 255
|
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| UNIPROTKB|Q9Y5P6 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 155/256 (60%), Positives = 198/256 (77%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS PKPLVDF NKP++LHQ+EAL A GV V+LA++Y +V+
Sbjct: 1 MKALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVL 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ S E EPLGTAGPLALARD L+ ++ +PFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQA 119
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
M++FHR HG E SI+VTKV+EPSKYGVVV E G++ +FVEKP+ FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
P+VL RI+L+PTSIEKEVFP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PAVLQRIQLQPTSIEKEVFPIMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239
Query: 241 SSSKLATGSNIIGNVL 256
+L +G I+GNVL
Sbjct: 240 QPERLCSGPGIVGNVL 255
|
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| UNIPROTKB|F1SPR4 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 153/256 (59%), Positives = 199/256 (77%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTLS+PKPLVDF NKP++LHQ+EAL + GV V+LA++Y +++
Sbjct: 1 MKALILVGGYGTRLRPLTLSIPKPLVDFCNKPILLHQVEALASAGVDHVILAVSYMSQML 60
Query: 61 LNXXXXXXXXXXXXXTCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ S E EPLGTAGPLALARD L+ ++ EPFFVLNSDVI ++P +
Sbjct: 61 EKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETAEPFFVLNSDVICDFPFQA 119
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
M++FHR HG E SI+VTKV+EPSKYGVVV E G++ +FVEKP+ FV NKINAG+Y+L+
Sbjct: 120 MVQFHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILS 179
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKN 240
P+VL RI+L+PTSIEKE+FP +A E +L+AM L GFWMDIGQPKD++TG+ L+L L++
Sbjct: 180 PAVLQRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQK 239
Query: 241 SSSKLATGSNIIGNVL 256
+L +G I+GNVL
Sbjct: 240 QPEQLCSGPGIVGNVL 255
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0CO20 | MPG1_CRYNJ | 2, ., 7, ., 7, ., 1, 3 | 0.628 | 0.9726 | 0.6840 | yes | no |
| A3QMC8 | GMPPB_CAEEL | 2, ., 7, ., 7, ., 1, 3 | 0.6215 | 0.9726 | 0.6821 | yes | no |
| O74484 | MPG1_SCHPO | 2, ., 7, ., 7, ., 1, 3 | 0.6472 | 0.9960 | 0.7024 | yes | no |
| Q4I1Y5 | MPG1_GIBZE | 2, ., 7, ., 7, ., 1, 3 | 0.6115 | 0.9960 | 0.7005 | yes | no |
| P0C5I2 | GMPPB_PIG | 2, ., 7, ., 7, ., 1, 3 | 0.6171 | 0.9960 | 0.7083 | yes | no |
| Q941T9 | GMPP2_ORYSJ | 2, ., 7, ., 7, ., 1, 3 | 0.8554 | 1.0 | 0.7091 | yes | no |
| Q68EQ1 | GMPPB_XENTR | 2, ., 7, ., 7, ., 1, 3 | 0.6132 | 0.9960 | 0.7083 | yes | no |
| Q295Y7 | GMPPB_DROPS | 2, ., 7, ., 7, ., 1, 3 | 0.6235 | 0.9882 | 0.6819 | yes | no |
| Q6BN12 | MPG1_DEBHA | 2, ., 7, ., 7, ., 1, 3 | 0.6023 | 0.9921 | 0.7016 | yes | no |
| Q6FRY2 | MPG12_CANGA | 2, ., 7, ., 7, ., 1, 3 | 0.6225 | 0.9960 | 0.7063 | yes | no |
| Q8BTZ7 | GMPPB_MOUSE | 2, ., 7, ., 7, ., 1, 3 | 0.6210 | 0.9960 | 0.7083 | yes | no |
| Q7JZB4 | GMPPB_DROME | 2, ., 7, ., 7, ., 1, 3 | 0.6274 | 0.9882 | 0.6856 | yes | no |
| Q9Y5P6 | GMPPB_HUMAN | 2, ., 7, ., 7, ., 1, 3 | 0.625 | 0.9960 | 0.7083 | yes | no |
| Q2YDJ9 | GMPPB_BOVIN | 2, ., 7, ., 7, ., 1, 3 | 0.6289 | 0.9960 | 0.7083 | yes | no |
| Q6DBU5 | GMPPB_DANRE | 2, ., 7, ., 7, ., 1, 3 | 0.5937 | 0.9960 | 0.7083 | yes | no |
| Q70SJ2 | MPG1_KLULA | 2, ., 7, ., 7, ., 1, 3 | 0.6186 | 0.9960 | 0.7063 | yes | no |
| Q54K39 | GMPPB_DICDI | 2, ., 7, ., 7, ., 1, 3 | 0.6562 | 0.9921 | 0.7075 | yes | no |
| Q6Z9A3 | GMPP3_ORYSJ | 2, ., 7, ., 7, ., 1, 3 | 0.8554 | 1.0 | 0.7091 | yes | no |
| Q6CCU3 | MPG1_YARLI | 2, ., 7, ., 7, ., 1, 3 | 0.5830 | 0.9804 | 0.6914 | yes | no |
| Q2UJU5 | MPG1_ASPOR | 2, ., 7, ., 7, ., 1, 3 | 0.616 | 0.9687 | 0.6813 | yes | no |
| Q4U3E8 | MPG1_ASPFU | 2, ., 7, ., 7, ., 1, 3 | 0.62 | 0.9687 | 0.6813 | yes | no |
| P41940 | MPG1_YEAST | 2, ., 7, ., 7, ., 1, 3 | 0.6381 | 0.9960 | 0.7063 | yes | no |
| O22287 | GMPP1_ARATH | 2, ., 7, ., 7, ., 1, 3 | 0.8632 | 1.0 | 0.7091 | yes | no |
| Q5B1J4 | MPG1_EMENI | 2, ., 7, ., 7, ., 1, 3 | 0.628 | 0.9687 | 0.6813 | yes | no |
| Q752H4 | MPG1_ASHGO | 2, ., 7, ., 7, ., 1, 3 | 0.6186 | 0.9960 | 0.7063 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.921 |
| 3rd Layer | 2.7.7.13 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_VI0713 | hypothetical protein (362 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.57.173.1 | SubName- Full=Putative uncharacterized protein; (346 aa) | • | • | 0.913 | ||||||
 | gw1.VII.3899.1 | SubName- Full=Putative uncharacterized protein; (346 aa) | • | • | 0.913 | ||||||
 | estExt_fgenesh4_pg.C_LG_XIV0248 | SubName- Full=Putative uncharacterized protein; (247 aa) | • | • | 0.909 | ||||||
 | estExt_Genewise1_v1.C_17140001 | phosphomannomutase (EC-5.4.2.8) (229 aa) | • | • | 0.908 | ||||||
 | estExt_fgenesh4_pg.C_LG_XIII0193 | GDP-D-mannose-3',5'-epimerase (EC-5.1.3.18) (375 aa) | • | 0.899 | |||||||
 | eugene3.01460030 | transferase, transferring glycosyl groups (EC-2.4.1.142) (481 aa) | • | • | • | 0.813 | |||||
 | estExt_fgenesh4_pg.C_290241 | hypothetical protein (80 aa) | • | • | 0.808 | ||||||
 | fgenesh4_pm.C_LG_V000700 | dolichyl-phosphate beta-D-mannosyltransferase (EC-2.4.1.83) (238 aa) | • | • | 0.804 | ||||||
 | estExt_Genewise1_v1.C_LG_II0203 | dolichyl-phosphate beta-D-mannosyltransferase (EC-2.4.1.83) (240 aa) | • | • | 0.804 | ||||||
 | fgenesh4_pg.C_LG_II002473 | hypothetical protein (89 aa) | • | 0.800 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 256 | |||
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 1e-162 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 9e-84 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 3e-79 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 2e-66 | |
| cd06428 | 257 | cd06428, M1P_guanylylT_A_like_N, N-terminal domain | 7e-61 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 1e-54 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 2e-54 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 3e-52 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 5e-51 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 8e-51 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 4e-41 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 6e-38 | |
| cd02524 | 253 | cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr | 2e-33 | |
| TIGR02623 | 254 | TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti | 1e-31 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 2e-27 | |
| cd02523 | 229 | cd02523, PC_cytidylyltransferase, Phosphocholine c | 5e-26 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 2e-24 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 3e-23 | |
| cd02538 | 240 | cd02538, G1P_TT_short, G1P_TT_short is the short f | 1e-22 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 6e-22 | |
| COG1210 | 291 | COG1210, GalU, UDP-glucose pyrophosphorylase [Cell | 2e-19 | |
| TIGR01099 | 260 | TIGR01099, galU, UTP-glucose-1-phosphate uridylylt | 3e-19 | |
| TIGR01173 | 451 | TIGR01173, glmU, UDP-N-acetylglucosamine diphospho | 2e-18 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 6e-18 | |
| COG1213 | 239 | COG1213, COG1213, Predicted sugar nucleotidyltrans | 6e-18 | |
| PRK14354 | 458 | PRK14354, glmU, bifunctional N-acetylglucosamine-1 | 1e-17 | |
| PRK14355 | 459 | PRK14355, glmU, bifunctional N-acetylglucosamine-1 | 5e-17 | |
| COG4750 | 231 | COG4750, LicC, CTP:phosphocholine cytidylyltransfe | 4e-16 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 1e-15 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 2e-14 | |
| PRK14357 | 448 | PRK14357, glmU, bifunctional N-acetylglucosamine-1 | 5e-14 | |
| cd04197 | 217 | cd04197, eIF-2B_epsilon_N, The N-terminal domain o | 4e-13 | |
| PRK15480 | 292 | PRK15480, PRK15480, glucose-1-phosphate thymidylyl | 3e-12 | |
| PRK14359 | 430 | PRK14359, glmU, bifunctional N-acetylglucosamine-1 | 8e-12 | |
| PRK14353 | 446 | PRK14353, glmU, bifunctional N-acetylglucosamine-1 | 1e-11 | |
| PRK10122 | 297 | PRK10122, PRK10122, GalU regulator GalF; Provision | 4e-11 | |
| TIGR01105 | 297 | TIGR01105, galF, UTP-glucose-1-phosphate uridylylt | 1e-10 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 2e-09 | |
| PRK14356 | 456 | PRK14356, glmU, bifunctional N-acetylglucosamine-1 | 3e-09 | |
| PRK14358 | 481 | PRK14358, glmU, bifunctional N-acetylglucosamine-1 | 3e-09 | |
| TIGR01207 | 286 | TIGR01207, rmlA, glucose-1-phosphate thymidylyltra | 5e-09 | |
| cd04183 | 231 | cd04183, GT2_BcE_like, GT2_BcbE_like is likely inv | 6e-09 | |
| PRK14352 | 482 | PRK14352, glmU, bifunctional N-acetylglucosamine-1 | 6e-09 | |
| PRK14360 | 450 | PRK14360, glmU, bifunctional N-acetylglucosamine-1 | 9e-09 | |
| cd02509 | 274 | cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guan | 1e-08 | |
| PRK13389 | 302 | PRK13389, PRK13389, UTP--glucose-1-phosphate uridy | 2e-08 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 5e-08 | |
| pfam12804 | 178 | pfam12804, NTP_transf_3, MobA-like NTP transferase | 2e-07 | |
| PRK09451 | 456 | PRK09451, glmU, bifunctional N-acetylglucosamine-1 | 7e-07 | |
| cd04182 | 186 | cd04182, GT_2_like_f, GT_2_like_f is a subfamily o | 5e-06 | |
| cd02516 | 218 | cd02516, CDP-ME_synthetase, CDP-ME synthetase is i | 8e-06 | |
| COG2266 | 177 | COG2266, COG2266, GTP:adenosylcobinamide-phosphate | 1e-05 | |
| COG0836 | 333 | COG0836, {ManC}, Mannose-1-phosphate guanylyltrans | 7e-05 | |
| COG1211 | 230 | COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erith | 1e-04 | |
| TIGR00453 | 217 | TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phospha | 2e-04 | |
| cd02503 | 181 | cd02503, MobA, MobA catalyzes the formation of mol | 2e-04 | |
| PRK00155 | 227 | PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphat | 2e-04 | |
| PRK00317 | 193 | PRK00317, mobA, molybdopterin-guanine dinucleotide | 3e-04 | |
| PRK05450 | 245 | PRK05450, PRK05450, 3-deoxy-manno-octulosonate cyt | 4e-04 | |
| COG0746 | 192 | COG0746, MobA, Molybdopterin-guanine dinucleotide | 4e-04 | |
| cd02517 | 239 | cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase ca | 5e-04 | |
| PRK13368 | 238 | PRK13368, PRK13368, 3-deoxy-manno-octulosonate cyt | 7e-04 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 0.001 | |
| PRK14489 | 366 | PRK14489, PRK14489, putative bifunctional molybdop | 0.002 | |
| PLN02241 | 436 | PLN02241, PLN02241, glucose-1-phosphate adenylyltr | 0.002 | |
| TIGR02665 | 186 | TIGR02665, molyb_mobA, molybdopterin-guanine dinuc | 0.002 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 0.002 | |
| PRK00725 | 425 | PRK00725, glgC, glucose-1-phosphate adenylyltransf | 0.003 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 448 bits (1156), Expect = e-162
Identities = 169/234 (72%), Positives = 203/234 (86%), Gaps = 1/234 (0%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKALILVGG+GTRLRPLTL+VPKPLV+F NKPMI HQIEAL GV E++LA+NY+PE M
Sbjct: 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDM 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ FLKE+EKKL IKIT S ETEPLGTAGPLALARD L DD EPFFVLNSDVI ++PL +
Sbjct: 61 VPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAE 119
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
+++FH+ HG E +I+VTKV++PSKYGVVV +E G++E+FVEKPK FVGNKINAGIY+LN
Sbjct: 120 LLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILN 179
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYL 234
PSVLDRI L+PTSIEKE+FP++A E +L+A LPGFWMDIGQPKD++ G+ LYL
Sbjct: 180 PSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 254 bits (650), Expect = 9e-84
Identities = 105/259 (40%), Positives = 152/259 (58%), Gaps = 8/259 (3%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKA+IL GG+GTRLRPLT PKPL+ A KP+I + +EAL A GV E+VL + Y E +
Sbjct: 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQI 61
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ + + L ++IT E EPLGTAG L A D L D F VLN DV+++ L +
Sbjct: 62 EEYFGD-GEGLGVRITYVVEKEPLGTAGALKNALDLLGGD---DFLVLNGDVLTDLDLSE 117
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVG--NKINAGIYL 178
++EFH+ G A+I +T+V +PS++GVV ++ G+V +F EKP N INAGIY+
Sbjct: 118 LLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYI 177
Query: 179 LNPSVLDRIEL-KPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLYLDF 236
+P V D IE + E+E+ P +A + ++ V G+W+DIG P+D + L L
Sbjct: 178 FDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG 237
Query: 237 LQKNSSSKLATGSNIIGNV 255
K+ + II +
Sbjct: 238 DGKSPLGPIEEPVVIIRSA 256
|
Length = 358 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 237 bits (608), Expect = 3e-79
Identities = 86/222 (38%), Positives = 129/222 (58%), Gaps = 8/222 (3%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTRLRPLT + PKPL+ A KP++ + IE L G+ E++L + Y E +
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEE 60
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMI 122
+ + K + I + EPLGTAG + A D L DD F V+N DV+++ L +++
Sbjct: 61 YFGD-GSKFGVNIEYVVQEEPLGTAGAVRNAEDFLGDD---DFLVVNGDVLTDLDLSELL 116
Query: 123 EFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPS 182
FHR G +A+I V +V++PS+YGVV +++ G+V +FVEKP N NAGIY+ P
Sbjct: 117 RFHREKGADATIAVKEVEDPSRYGVVELDDD-GRVTRFVEKPTLPESNLANAGIYIFEPE 175
Query: 183 VLDRIELKPTS---IEKEVFPEIAVENKLFAMVLPGFWMDIG 221
+LD I + P + E K++ + G+W+DIG
Sbjct: 176 ILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 2e-66
Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 14/247 (5%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVM 60
KA+IL GG GTRL PLT ++ KPLV +K PMI + + L G+ E ++ + +
Sbjct: 1 KAIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFL 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ K +++T + + EP GTA +ALA D L DD E VL D I ++
Sbjct: 61 VAEQLGDGSKFGLQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDFEE 120
Query: 121 MIEFHRGHG--GEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVG-NKINAGIY 177
++ R G + + V++P+ YGV+ +E G+V +FVEKP N + GIY
Sbjct: 121 AVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDEN-GRVIRFVEKPDLPKASNYASMGIY 179
Query: 178 LLNPSVLDRI-----ELKPTSIE-KEVFPEIAVENKLF-AMVLPGF--WMDIGQPKDYIT 228
N V + EL E + P + L A + G+ W D+G
Sbjct: 180 FFNSGVFLFLAKYLKELARGEDEITDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWE 239
Query: 229 GLRLYLD 235
L
Sbjct: 240 ANLKLLT 246
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 7e-61
Identities = 94/257 (36%), Positives = 140/257 (54%), Gaps = 26/257 (10%)
Query: 3 ALILVGG--FGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEV 59
A+ILVGG GTR RPL+L VPKPL A KPMI H IEA V + EV+L Y V
Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESV 60
Query: 60 MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLK 119
+F+ + +++ + I QE +PLGTAG L RD+++ + FFVLN+DV ++PL+
Sbjct: 61 FSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQ 120
Query: 120 QMIEFHRGHGGEASIMVTKV--DEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIY 177
+++EFH+ HG +I+ T+ ++ S YG +V + + G+V +VEKP+ FV + IN G+Y
Sbjct: 121 ELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVY 180
Query: 178 LLNPSVLDRIEL---------------------KPTSIEKEVFPEIAVENKLFAMVLPGF 216
L +P + D I+ + +E++V +A KL+ F
Sbjct: 181 LFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDF 240
Query: 217 WMDIGQPKDYITGLRLY 233
W I I RLY
Sbjct: 241 WSQIKTAGSAIYANRLY 257
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 1e-54
Identities = 93/263 (35%), Positives = 137/263 (52%), Gaps = 22/263 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKA+IL G GTR+RPLT + PKP++ A KP++ H IEAL+ G+ + V + Y E +
Sbjct: 1 MKAVILAAGKGTRMRPLTETRPKPMLPVAGKPLLEHIIEALRDAGIDDFVFVVGYGKEKV 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LK 119
+ + + + I + E LGTA L A++ +DD F VLN DV+ + L+
Sbjct: 61 REYFGD-GSRGGVPIEYVVQEEQLGTADALGSAKE-YVDD---EFLVLNGDVLLDSDLLE 115
Query: 120 QMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLL 179
++I +I V +VD+PS YGVV + G+V VEKP+N N INAGIYL
Sbjct: 116 RLIR-----AEAPAIAVVEVDDPSDYGVVETDG--GRVTGIVEKPENPPSNLINAGIYLF 168
Query: 180 NPSVLDRIELKPTSIEKEVFPEI-------AVENKLFAMVLPGFWMDIGQPKDYITGLRL 232
+P + + +E S E E+ E K+ A+ L GFW+D+G+P D +
Sbjct: 169 SPEIFELLEKTKLSPRGEY--ELTDALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEA 226
Query: 233 YLDFLQKNSSSKLATGSNIIGNV 255
LD L+ + I G V
Sbjct: 227 LLDNLEPRIEGTVEENVTIKGPV 249
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 2e-54
Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 5/224 (2%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL GG GTRLR + +PKPL A +P + + +E L G++ +VL++ Y E +
Sbjct: 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEE 60
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMI 122
+ + + I+I E EPLGT G + A KL +D F VLN D + L ++
Sbjct: 61 YFGD-GYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQ---FLVLNGDTYFDVDLLALL 116
Query: 123 EFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPS 182
R G +A++ + +V + S+YG V ++ G+V FVEK IN G+YLL
Sbjct: 117 AALRASGADATMALRRVPDASRYGNVTVDGD-GRVIAFVEKGPGAAPGLINGGVYLLRKE 175
Query: 183 VLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDY 226
+L I S+E +V P + +L+ + G+++DIG P+DY
Sbjct: 176 ILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDY 219
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 3e-52
Identities = 80/241 (33%), Positives = 130/241 (53%), Gaps = 12/241 (4%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK LIL GG GTRLRPLT + PK L+ A KP+I + IE L+ G+ ++ + + E +
Sbjct: 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEI 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
L + + ++IT + EPLG A + ARD L EPF V D + + +
Sbjct: 61 KEALGD-GSRFGVRITYILQEEPLGLAHAVLAARDFL---GDEPFVVYLGDNLIQEGISP 116
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
++ +ASI++ +V++P ++GV V+++ G++ + VEKPK N G+Y
Sbjct: 117 LVRDFLEEDADASILLAEVEDPRRFGVAVVDD--GRIVRLVEKPKEPPSNLALVGVYAFT 174
Query: 181 PSVLDRI-ELKPTSI-EKEVFPEIA--VEN--KLFAMVLPGFWMDIGQPKDYITGLRLYL 234
P++ D I LKP+ E E+ I ++ ++ ++ G+W D G P+D + RL L
Sbjct: 175 PAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL 234
Query: 235 D 235
D
Sbjct: 235 D 235
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 5e-51
Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 20/230 (8%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
+I+ GG GTRLRPLT + PKP++ KP++ I+ A G +++NY E++ +
Sbjct: 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIED 60
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMI 122
+ + K + I+ +E +PLGTAG L+L +K +PF V+N D+++ + ++
Sbjct: 61 YFGD-GSKFGVNISYVREDKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLL 115
Query: 123 EFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPK-NFVGNKINAGIYLLNP 181
+FH+ + +A++ V + + YGVV E G++ EKP +F +NAGIY+L P
Sbjct: 116 DFHKENNADATVCVREYEVQVPYGVVETEG--GRITSIEEKPTHSF---LVNAGIYVLEP 170
Query: 182 SVLDRIELK-----PTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDY 226
VLD I P IEK I K+ + +W+DIG+P+DY
Sbjct: 171 EVLDLIPKNEFFDMPDLIEK----LIKEGKKVGVFPIHEYWLDIGRPEDY 216
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 8e-51
Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 13/228 (5%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
KA+IL G GTR+RPLT + PKPLV A KP+I H ++ L A G+ +V+ ++ + +
Sbjct: 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIE 60
Query: 62 NFLKEFEKKLEIKITCSQE-TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
L + L I I S E E L T G + A L EPF V+N D++ + L
Sbjct: 61 AHLGDSRFGLRITI--SDEPDELLETGGGIKKALPLL---GDEPFLVVNGDILWDGDLAP 115
Query: 121 MIEFHRGHGGEASIMVTKVDEPSK--YGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYL 178
++ H +++ V P G ++ G++ + V GI +
Sbjct: 116 LLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDAD-GRLRR---GGGGAVAPFTFTGIQI 171
Query: 179 LNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDY 226
L+P + I S+ ++ +LF +V G W D+G P+
Sbjct: 172 LSPELFAGIPPGKFSL-NPLWDRAIAAGRLFGLVYDGLWFDVGTPERL 218
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 4e-41
Identities = 79/248 (31%), Positives = 127/248 (51%), Gaps = 16/248 (6%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK +IL GG GTRLRPLT VPK L+ +KPMI + +E L G+ ++++ + + +
Sbjct: 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPT 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
L + IT + + EP G A + +A D + D + F + D I + L +
Sbjct: 61 FKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAED-FVGD--DDFVLYLGDNIFQDGLSE 117
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
++E G A+I++ +VD+PS+YGVV +E GKV EKPK N G+Y +
Sbjct: 118 LLEHFAEEGSGATILLYEVDDPSRYGVVEFDED-GKVIGLEEKPKEPKSNLAVTGLYFYD 176
Query: 181 PSVLDRIE-LKPTSIEKEVFPEIAVENKLF--------AMVLPGFWMDIGQPKDYITGLR 231
PSV + I+ +KP S E+ EI L+ A+++ G+W+D G P+ +
Sbjct: 177 PSVFEAIKQIKP-SARGEL--EITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANN 233
Query: 232 LYLDFLQK 239
++
Sbjct: 234 FVRTVSKR 241
|
Length = 286 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 6e-38
Identities = 87/263 (33%), Positives = 135/263 (51%), Gaps = 17/263 (6%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVM 60
KALIL G GTRLRPLT + PK L+ ANKP++ + IE L G+T++ + + E +
Sbjct: 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEI 60
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
+ E E + KIT + EPLG A + ARD L DD F V D + + + +
Sbjct: 61 KEIVGEGE-RFGAKITYIVQGEPLGLAHAVYTARDFLGDD---DFVVYLGDNLIQDGISR 116
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
++ +A I++TKV +P+ +GV V+E+ ++ K VEKPK N G+Y+
Sbjct: 117 FVKSFEEKDYDALILLTKVRDPTAFGVAVLEDG-KRILKLVEKPKEPPSNLAVVGLYMFR 175
Query: 181 PSVLDRIELKPTSIEKEVFPEIA------VEN--KLFAMVLPGFWMDIGQPKDYITGLRL 232
P + + I+ S E+ EI +E K+ + G+W D G+P+D + RL
Sbjct: 176 PLIFEAIKNIKPSWRGEL--EITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRL 233
Query: 233 YLDFLQKNSSSKLATGSNIIGNV 255
LD +++ + S I G V
Sbjct: 234 ILDEVEREVQG-VDDESKIRGRV 255
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 2e-33
Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 36/243 (14%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
+IL GG GTRL T PKP+V+ +P++ H ++ G + +L + Y+ V
Sbjct: 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHV--- 57
Query: 63 FLKEF----------------EKKLEI--------KITCSQETEPLGTAGPLALARDKLI 98
+KE+ ++E+ K+T T G L R L
Sbjct: 58 -IKEYFLNYFLHNSDVTIDLGTNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLG 116
Query: 99 DDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158
DD E F + D +S+ + +IEFHR HG A VT V P ++G + +++ G+V
Sbjct: 117 DD--ETFMLTYGDGVSDVNINALIEFHRSHGKLA--TVTAVHPPGRFGELDLDDD-GQVT 171
Query: 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFW- 217
F EKP+ G IN G ++L P V D I+ T E+E +A + +L A GFW
Sbjct: 172 SFTEKPQG-DGGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQ 230
Query: 218 -MD 219
MD
Sbjct: 231 CMD 233
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253 |
| >gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-31
Identities = 78/251 (31%), Positives = 120/251 (47%), Gaps = 30/251 (11%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
KA+IL GG GTR+ T PKP+V+ KP++ H ++ G+ + ++ Y+ V+
Sbjct: 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIK 60
Query: 62 NFLKEF-------------------EKKLE-IKITCSQETEPLGTAGPLALARDKLIDDS 101
+ + K++E ++T E T G L R+ L D
Sbjct: 61 EYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDD-- 118
Query: 102 GEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFV 161
E F D +++ +K +I FHR HG +A+ VT V P ++G + +E +V F
Sbjct: 119 -EAFCFTYGDGVADIDIKALIAFHRKHGKKAT--VTAVQPPGRFGALDLEG--EQVTSFQ 173
Query: 162 EKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFW--MD 219
EKP G IN G ++LNPSVLD I+ T E+E +A +L A GFW MD
Sbjct: 174 EKPLG-DGGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQPMD 232
Query: 220 IGQPKDYITGL 230
+ K+Y+ L
Sbjct: 233 TLRDKNYLEEL 243
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-27
Identities = 80/265 (30%), Positives = 118/265 (44%), Gaps = 45/265 (16%)
Query: 1 MKALILVGGFGTRLRPLTLSVPK---PLVDFANKPMILHQIEALKAVGVTEVVL------ 51
KA+I G GTR P T ++PK P+VD KP+I + +E A G+ ++++
Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVD---KPVIQYIVEEAVAAGIEDIIIVTGRGK 57
Query: 52 -AI------NYQPEVMLNF-----LKEFEKKLEIKITCS--QETEPLGTAGPLALARDKL 97
AI +Y+ E L L E + + ++ EPLG + A+
Sbjct: 58 RAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKP-F 116
Query: 98 IDDSGEPFFVLNSDVI--SEYP-LKQMIEFHRGHGGEASIMVTKVDEP--SKYGVVVMEE 152
I D EPF VL D + S+ P LKQ+IE + G + I V +V SKYG+V E+
Sbjct: 117 IGD--EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA-SVIAVEEVPPEDVSKYGIVKGEK 173
Query: 153 TMG---KVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKPTSIEKEV-----FPEI 202
G KV+ VEKPK N G Y+L P + D +E E+ ++
Sbjct: 174 IDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKL 233
Query: 203 AVENKLFAMVLPGFWMDIGQPKDYI 227
E ++A V G D G Y+
Sbjct: 234 LEEEPVYAYVFEGKRYDCGNKLGYL 258
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
| >gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-26
Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 25/237 (10%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G G+RLRPLT PK L++ KP++ QIE LK G+ ++V+ Y+ E +
Sbjct: 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEE 60
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMI 122
LK K IK + + L LARD L E F +L DV+ + ++
Sbjct: 61 LLK---KYPNIKFVYNPDYAETNNIYSLYLARDFL----DEDFLLLEGDVVFD---PSIL 110
Query: 123 EFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINA---GIYLL 179
E + +I+V K + + V + G + + K KN +I GI
Sbjct: 111 ERLLSSPADNAILVDKKTKEWEDEYVKDLDDAGVLLGIISKAKN--LEEIQGEYVGISKF 168
Query: 180 NPSVLDRI-----ELKPTSIEK----EVFPEIAVENKLFAMVLP-GFWMDIGQPKDY 226
+P DR+ EL + + E + + GFW +I +D
Sbjct: 169 SPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISDGFWYEIDDLEDL 225
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 2e-24
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 27/195 (13%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ +PK L A KPM+ H ++A +A+G +V+ + + E +
Sbjct: 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKK 57
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
L + + E LGT + A L D G+ VL DV I+ L++
Sbjct: 58 ALANP------NVEFVLQEEQLGTGHAVKQALPALKDFEGD-VLVLYGDVPLITPETLQR 110
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE---------KPKNFVGNK 171
++E HR G + +++ ++++P+ YG ++ + GKV + VE + +
Sbjct: 111 LLEAHREAGADVTVLTAELEDPTGYGRIIRDGN-GKVLRIVEEKDATEEEKAIR-----E 164
Query: 172 INAGIYLLNPSVLDR 186
+NAGIY + L
Sbjct: 165 VNAGIYAFDAEFLFE 179
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 3e-23
Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 44/222 (19%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEV-VLAINYQPEV 59
+A++L GFG+R PLT +PK L+ AN P+I + +E L+ GV EV V+ + +
Sbjct: 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAI 60
Query: 60 MLNFLKEF----EKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE 115
+ + LK K+ + + S E G A L R + D F +L+ D++S
Sbjct: 61 IEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLIRSD----FLLLSCDLVSN 116
Query: 116 YPLKQMIE----FHRGHGGEASIMVTKVDEPS---------KYGVVVMEETMGKV----- 157
PL +++E + A++ V P + V+ ++ ++
Sbjct: 117 IPLSELLEERRKKDKNA--IATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHY 174
Query: 158 EKFVEKPKNFVGNK---------------INAGIYLLNPSVL 184
E+ +++ + K ++ IY+ +P VL
Sbjct: 175 EEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 1e-22
Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 22/240 (9%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK +IL GG GTRL PLT V K L+ +KPMI + + L G+ E+++ PE +
Sbjct: 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIIST--PEDL 58
Query: 61 LNFLKEFE--KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE-YP 117
F + L I+IT + + +P G A + + + DD P ++ D I
Sbjct: 59 PLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDD---PVCLILGDNIFYGQG 115
Query: 118 LKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIY 177
L +++ A++ +V++P +YGVV +E G+V EKPK N G+Y
Sbjct: 116 LSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDEN-GRVLSIEEKPKKPKSNYAVTGLY 174
Query: 178 LLNPSVLDRIE-LKPTSIEKEVFPEIA-------VENKLFAMVLP--GFWMDIGQPKDYI 227
+ V + + LKP S E+ EI + KL +L W+D G + +
Sbjct: 175 FYDNDVFEIAKQLKP-SARGEL--EITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLL 231
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 6e-22
Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 19/185 (10%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ A+IL G GTR++ +PK L A KPM+ H I+A +A+G ++V+ + + E +
Sbjct: 3 LSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQV 59
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
L E + + + E LGT + A L DD VL DV I+ L
Sbjct: 60 REALAERDD-----VEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETL 114
Query: 119 KQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE------KPKNFVGNKI 172
++++ H HG A+++ ++D+P+ YG +V + G+V VE + K +I
Sbjct: 115 EELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGN-GEVTAIVEEKDASEEEKQI--KEI 171
Query: 173 NAGIY 177
N GIY
Sbjct: 172 NTGIY 176
|
Length = 460 |
| >gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 2e-19
Identities = 83/269 (30%), Positives = 124/269 (46%), Gaps = 52/269 (19%)
Query: 1 MKALILVGGFGTRLRPLTLSVPK---PLVDFANKPMILHQIEALKAVGVTEVVL------ 51
KA+I G GTR P T ++PK P+VD KP+I + +E A G+ E+++
Sbjct: 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVD---KPLIQYIVEEAVAAGIEEILIVTGRGK 61
Query: 52 -AI----NYQPEVMLNFLKEFEKKLEIK--------ITCSQ--ETEPLGTAGPLALARDK 96
AI + E + N L++ K+ ++ +T S + EPLG + A+
Sbjct: 62 RAIEDHFDTSYE-LENTLEKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKP- 119
Query: 97 LIDDSGEPFFVLNSDVI--SEYP-LKQMIEFHRGHGGEASIMVTKV--DEPSKYGVV--- 148
+ D EPF VL D + SE P LKQMIE + GG I V +V ++ SKYGV+
Sbjct: 120 FVGD--EPFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVEEVPPEDVSKYGVIDPG 176
Query: 149 -VMEETMGKVEKFVEKPKNFVG----NKINAGIYLLNPSVLDRIELKPTSIEKEV----- 198
+E+ + KV+ VEKPK N G Y+L P + D +E E+
Sbjct: 177 EPVEKGVYKVKGMVEKPK--PEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDA 234
Query: 199 FPEIAVENKLFAMVLPGFWMDIGQPKDYI 227
++ + + A V G D G YI
Sbjct: 235 IKKLLKKEPVLAYVFEGKRYDCGSKLGYI 263
|
Length = 291 |
| >gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 3e-19
Identities = 73/263 (27%), Positives = 118/263 (44%), Gaps = 39/263 (14%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVL-------AI 53
KA+I G GTR P T ++PK ++ +KP+I + +E G+ ++++ +I
Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRSI 60
Query: 54 ------NYQPEVML------NFLKEFEKKLE-IKITCSQETEPLGTAGPLALARDKLIDD 100
+Y+ E L LKE + I ++ E G + A + D
Sbjct: 61 EDHFDTSYELEHQLEKTNKEELLKEVRSIIPLATIFYVRQKEQKGLGHAVLCAE-PFVGD 119
Query: 101 SGEPFFVLNSDVI--SEYP-LKQMIEFHRGHGGEASIMVTKV--DEPSKYGVV---VMEE 152
EPF V+ D I SE P LKQMI+ + +G I V +V +E SKYGV+ +EE
Sbjct: 120 --EPFAVILGDDICVSEEPVLKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDGEGVEE 176
Query: 153 TMGKVEKFVEKPKNFVG--NKINAGIYLLNPSVLDRIELKPTSIEKEV-----FPEIAVE 205
+ +++ VEKPK N G Y+L P + + +E P E+ ++ +
Sbjct: 177 GVYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFELLEETPPGKGGEIQLTDALRKLLKK 236
Query: 206 NKLFAMVLPGFWMDIGQPKDYIT 228
+++A G D G YI
Sbjct: 237 ERVYAYKFKGKRYDCGSKLGYIK 259
|
Built to distinquish between the highly similar genes galU and galF [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 260 |
| >gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-18
Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 22/205 (10%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ +IL G GTR++ +PK L A KPM+ H I+A +A+G ++ + + E +
Sbjct: 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQV 57
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
L + + E LGT + A L DD VL DV IS L
Sbjct: 58 RKALA------NRDVNWVLQAEQLGTGHAVLQALPFLPDD--GDVLVLYGDVPLISAETL 109
Query: 119 KQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEK----PKNFVGNKINA 174
++++E HR +G +++ K+ +P+ YG ++ E GKV VE + +IN
Sbjct: 110 ERLLEAHRQNG--ITLLTAKLPDPTGYGRIIREND-GKVTAIVEDKDANAEQKAIKEINT 166
Query: 175 GIYLLNPSVLDRI--ELKPTSIEKE 197
G+Y+ + + L R +L + + E
Sbjct: 167 GVYVFDGAALKRWLPKLSNNNAQGE 191
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 6e-18
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 11/149 (7%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTE--VVLAINYQPE 58
+A+IL GG G+RL PLT ++PK L+ ANKPMI + ++ L+ G + VV+ Q E
Sbjct: 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAE 60
Query: 59 VML---NFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE 115
+ +F ++KL+ E +GTA L R K+ D F VL+ D+I++
Sbjct: 61 ISTYLRSFPLNLKQKLDEVTIVLD--EDMGTADSLRHIRKKIKKD----FLVLSCDLITD 114
Query: 116 YPLKQMIEFHRGHGGEASIMVTKVDEPSK 144
PL ++++ HR H ++++ S+
Sbjct: 115 LPLIELVDLHRSHDASLTVLLYPPPVSSE 143
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|224134 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 6e-18
Identities = 58/249 (23%), Positives = 107/249 (42%), Gaps = 20/249 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTE-VVLAINYQPEV 59
MKA+IL GFG+RL P +PK LV+ + +I IE L G+TE VV+ Y+ ++
Sbjct: 4 MKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADL 60
Query: 60 MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLK 119
+ FLK++ KI + + E T L LA+D + F ++ SD + Y
Sbjct: 61 VEEFLKKY--PFNAKIVINSDYEKTNTGYSLLLAKDYMDGR----FILVMSDHV--YEPS 112
Query: 120 QMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLL 179
+ G + + +++ G++ + + + G I GI++L
Sbjct: 113 ILERLLEAPGEGLIVDRRPRYVGVE-EATKVKDEGGRIVEIGKDLTEYDGEDI--GIFIL 169
Query: 180 NPSVLDRIE----LKPTSIEKEVFPEIAVENKLFAMVLPG-FWMDIGQPKDYITGLRLYL 234
+ S+ + + +EV E + + + G FWM++ P+D + +
Sbjct: 170 SDSIFEDTYELLVERSEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLV 229
Query: 235 DFLQKNSSS 243
++K
Sbjct: 230 PNIKKGVGD 238
|
Length = 239 |
| >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 1e-17
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 18/181 (9%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ +PK L KPM+ H ++++K G+ ++V + + E
Sbjct: 5 AIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAE---- 57
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
E ++ L + + + E LGT + A + L D G V+ D I+ LK
Sbjct: 58 ---EVKEVLGDRSEFALQEEQLGTGHAVMQAEEFLADKEGT-TLVICGDTPLITAETLKN 113
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE----KPKNFVGNKINAGI 176
+I+FH H A+I+ + P+ YG ++ E G+VEK VE + +IN G
Sbjct: 114 LIDFHEEHKAAATILTAIAENPTGYGRIIRNEN-GEVEKIVEQKDATEEEKQIKEINTGT 172
Query: 177 Y 177
Y
Sbjct: 173 Y 173
|
Length = 458 |
| >gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 5e-17
Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 16/181 (8%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ + V PL A +PM+ + A + G +VL + +Q E +
Sbjct: 6 AIILAAGKGTRMKSDLVKVMHPL---AGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVRE 62
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
+ ++ + + E LGT +A A L SG +L DV + L+
Sbjct: 63 HFAG-----DGDVSFALQEEQLGTGHAVACAAPALDGFSGT-VLILCGDVPLLRAETLQG 116
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEK----PKNFVGNKINAGI 176
M+ HR G +++ +++ P YG +V + G+V + VE+ P+ ++N+GI
Sbjct: 117 MLAAHRATGAAVTVLTARLENPFGYGRIVRDAD-GRVLRIVEEKDATPEERSIREVNSGI 175
Query: 177 Y 177
Y
Sbjct: 176 Y 176
|
Length = 459 |
| >gnl|CDD|227093 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 4e-16
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M A+IL G G+R PLT S PK L+ +P+I QIE L+ G+ ++ + + Y E
Sbjct: 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKE-Q 59
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV 112
+LK+ K ++ + + + L LARD L + ++++SD
Sbjct: 60 FEYLKD---KYDVTLVYNPKYREYNNIYSLYLARDFLNNT-----YIIDSDN 103
|
Length = 231 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-15
Identities = 66/254 (25%), Positives = 112/254 (44%), Gaps = 38/254 (14%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQP---- 57
A+IL GG G+RL PLT KP V F K +I + G+ + + Y+
Sbjct: 8 AIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLN 67
Query: 58 -------EVMLNFLKEFEKKLEIKITCSQETEPL---GTAGPLALARD-KLIDDSGEPFF 106
L+ + I +E GTA A+ ++ +I S +
Sbjct: 68 DHIGRGWPWDLDRKNGG---VFILPAQQREGGERWYEGTA--DAIYQNLLIIRRSDPEYV 122
Query: 107 V-LNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD--EPSKYGVVVMEETMGKVEKFVEK 163
+ L+ D I + M++FH G + ++ V +V E S++GV+ ++E G++ +FVEK
Sbjct: 123 LILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDEN-GRIIEFVEK 181
Query: 164 PKN--FVGNKINAGIYLLNPSVLDRIEL------KPTS---IEKEVFPEIAVENKLFAMV 212
P + + + GIY+ N +L EL P S K++ P++ K++A
Sbjct: 182 PADGPPSNSLASMGIYIFNTDLL--KELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYE 239
Query: 213 LPGFWMDIGQPKDY 226
G+W D+G Y
Sbjct: 240 FSGYWRDVGTIDSY 253
|
Length = 393 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-14
Identities = 61/252 (24%), Positives = 108/252 (42%), Gaps = 40/252 (15%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMIL-----HQIEALKAVGVTEVVLAINYQP 57
A++L GG G+RL PLT KP V F K I+ + I + G+ + + Y+
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS----GIRRIGVLTQYKS 56
Query: 58 EV----------MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEP--F 105
F+ F L + S GTA A+ ++ + + +P
Sbjct: 57 HSLNRHIQRGWDFDGFIDGFVTLLPAQQRESGTDWYQGTAD--AVYQNLDLIEDYDPEYV 114
Query: 106 FVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD--EPSKYGVVVMEETMGKVEKFVEK 163
+L+ D I + ++M+++H G + +I V E S++GV+ ++E G++ F EK
Sbjct: 115 LILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDED-GRIVDFEEK 173
Query: 164 PKNFVGNKINA-------GIYLLNPSVL-----DRIELKPTSIE--KEVFPEIAVENKLF 209
P N GIY+ + VL + + +S + K++ P E +
Sbjct: 174 PANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQ 233
Query: 210 AMVLPGFWMDIG 221
A + G+W D+G
Sbjct: 234 AYLFSGYWRDVG 245
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 5e-14
Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 27/210 (12%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M+AL+L G GTR++ +PK L + KPMI I+ K V +V + + ++ E++
Sbjct: 1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELV 56
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
L E+ K + E LGTA + ARD + + G+ +L DV ISE L
Sbjct: 57 KKLLPEWVKIFL-------QEEQLGTAHAVMCARDFI--EPGDDLLILYGDVPLISENTL 107
Query: 119 KQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNK-INAGIY 177
K++IE H G + +I+V +++P+ YG ++ + ++ + + P+ K IN GIY
Sbjct: 108 KRLIEEHNRKGADVTILVADLEDPTGYGRIIRDGGKYRIVEDKDAPEEEKKIKEINTGIY 167
Query: 178 LLNPSVLDRIELKPTSIEKEVFPEIAVENK 207
+ + L EV P+I EN
Sbjct: 168 VFSGDFL-----------LEVLPKIKNENA 186
|
Length = 448 |
| >gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-13
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 20/135 (14%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEV-VLAINYQPEVML 61
A++L F R RPLT P+ L+ AN P+I + +E L GV EV V ++ ++
Sbjct: 3 AVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIK- 61
Query: 62 NFLKEFEK------KLEIKITCSQETEPLGTAGPLALARD----KLIDDSGEPFFVLNSD 111
++++ + + + I S++ LG A RD LI F +++ D
Sbjct: 62 EYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDA-----LRDLDAKGLIRG---DFILVSGD 113
Query: 112 VISEYPLKQMIEFHR 126
V+S LK+++E H+
Sbjct: 114 VVSNIDLKEILEEHK 128
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 217 |
| >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 3e-12
Identities = 56/233 (24%), Positives = 104/233 (44%), Gaps = 10/233 (4%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T++V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 62 NFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
L + + + + P G A + + + D + VL ++ + L ++
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGD--DCALVLGDNIFYGHDLPKL 122
Query: 122 IEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNP 181
+E A++ V++P +YGVV ++ G EKP N G+Y +
Sbjct: 123 MEAAVNKESGATVFAYHVNDPERYGVVEFDQN-GTAISLEEKPLQPKSNYAVTGLYFYDN 181
Query: 182 SVLDRIE-LKPTS---IEKEVFPEIAVENKLFAMVLPG---FWMDIGQPKDYI 227
V++ + LKP++ +E I +E ++ + G W+D G + I
Sbjct: 182 DVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLI 234
|
Length = 292 |
| >gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 8e-12
Identities = 59/192 (30%), Positives = 89/192 (46%), Gaps = 27/192 (14%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQI-EALKAVGVTEVVLAINYQPEVMLN 62
+IL G GTR++ S+PK L KPM+ + + EA VVL ++Q E +
Sbjct: 6 IILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAISDDVHVVL--HHQKERIKE 60
Query: 63 FLKEFEKKLEIKITCSQETEPL-GTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
+ E+ + Q+ E GT G L I+ E +LN D+ PL +
Sbjct: 61 AVLEYFPGVIFHT---QDLENYPGTGGAL-----MGIEPKHERVLILNGDM----PLVEK 108
Query: 122 IEFHRGHGGEASIM--VTKVDEPSKYGVVVMEETMGKVEKFVE-KPKNFVGNKI---NAG 175
E + +A I+ V + +P YG VV+E G+V+K VE K N KI NAG
Sbjct: 109 DELEKLLENDADIVMSVFHLADPKGYGRVVIEN--GQVKKIVEQKDANEEELKIKSVNAG 166
Query: 176 IYLLNPSVLDRI 187
+YL + +L+
Sbjct: 167 VYLFDRKLLEEY 178
|
Length = 430 |
| >gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 1e-11
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ S+PK L A +PM+ H + A ++G + V + + E +
Sbjct: 8 AIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAA 64
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
+ EI Q+ E LGTA + AR+ L G+ VL D I+ L +
Sbjct: 65 AAAKIAPDAEI---FVQK-ERLGTAHAVLAAREALAGGYGD-VLVLYGDTPLITAETLAR 119
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE 162
+ E G + ++ + +P+ YG ++++ G++ VE
Sbjct: 120 LRE-RLADGADVVVLGFRAADPTGYGRLIVKG--GRLVAIVE 158
|
Length = 446 |
| >gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 4e-11
Identities = 66/276 (23%), Positives = 116/276 (42%), Gaps = 58/276 (21%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN------ 54
+KA+I V G G + P T ++PK ++ +KPMI + ++ + A G+ E+VL +
Sbjct: 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAV 63
Query: 55 -------YQPEVMLNFLKEFEKKLEIKITCS--------QETEPLGTAGPLALARDKLID 99
Y+ E +L + + E++ C ++ +PLG + AR + D
Sbjct: 64 ENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGD 123
Query: 100 DSGEPFFVLNSDVISE--------YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVME 151
PF V+ DV+ + Y L MI G + + S+Y V+ +
Sbjct: 124 ---NPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTK 180
Query: 152 ETM---GKVEK---FVEKPKN---FVGNKINAGIYLLN-----------PSVLDRIELKP 191
E + GKV + F+EKP + + G Y+L+ P RI+L
Sbjct: 181 EPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQL-- 238
Query: 192 TSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYI 227
+ E+A + + AM++ G D G+ Y+
Sbjct: 239 ----TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYM 270
|
Length = 297 |
| >gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 1e-10
Identities = 65/276 (23%), Positives = 117/276 (42%), Gaps = 46/276 (16%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+KA+I V G G + P T ++PK ++ +KPMI + ++ + A G+ E+VL + +
Sbjct: 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAV 63
Query: 61 LNFLK---EFEKKLE------------------IKITCSQETEPLGTAGPLALARDKLID 99
N E E LE + I ++ +PLG + AR + D
Sbjct: 64 ENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGD 123
Query: 100 DSGEPFFVLNSDVISE--------YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVME 151
+ PF V+ D+I + Y L MI G + + S+Y V+ +
Sbjct: 124 N---PFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTK 180
Query: 152 ETM---GKVEKFVE------KPKNFVGNKINAGIYLLNPSVLDRIE-LKPTSIEK----E 197
E + GKV + VE +P+ + + G Y+L+ + +E +P + + +
Sbjct: 181 EPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTD 240
Query: 198 VFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLY 233
E+A + + AM++ G D G+ Y+ Y
Sbjct: 241 AIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose [Regulatory functions, Protein interactions]. Length = 297 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-09
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 120 QMIEFHRGHGGEASIMVTKV--DEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIY 177
+M+++H+ + +I V +V +E S++G++ +E M VE F EKPKN N + GIY
Sbjct: 135 KMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVE-FEEKPKNPKSNLASMGIY 193
Query: 178 LLNPSVLDRI----ELKPTSIE---KEVFPEIAVEN-KLFAMVLPGFWMDIG 221
+ N L E P S K V P E KL+A G+W D+G
Sbjct: 194 IFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVG 245
|
Length = 380 |
| >gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-09
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 26/195 (13%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
ALIL G GTR+ PK L +PM+ AL+ + V + ++ +++
Sbjct: 8 ALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRA 64
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSD--VISEYPLKQ 120
+ + + + QE + LGT L A L + V+N D +++ +
Sbjct: 65 AFPDEDARFVL-----QE-QQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDD 118
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNF-------VGNKIN 173
++ G + + M + +P YG VV G V VE K++ ++N
Sbjct: 119 FLK--EAAGADLAFMTLTLPDPGAYGRVVRRN--GHVAAIVEA-KDYDEALHGPETGEVN 173
Query: 174 AGIYLLNPSVLDRIE 188
AGIY L LD +E
Sbjct: 174 AGIYYLR---LDAVE 185
|
Length = 456 |
| >gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 3e-09
Identities = 44/197 (22%), Positives = 88/197 (44%), Gaps = 22/197 (11%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ +IL G GTR++ ++PK L A +PM+ ++A + +G ++V+ + E
Sbjct: 8 LDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAE-- 62
Query: 61 LNFLKEFEKKLEIK-ITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSD--VISEYP 117
+ E L+ + +++ + LGT L + VL D ++
Sbjct: 63 -----QVEAALQGSGVAFARQEQQLGTGDAFLSGASAL-TEGDADILVLYGDTPLLRPDT 116
Query: 118 LKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEK----PKNFVGNKIN 173
L+ ++ HR G +I+ ++ + + YG +V G VE+ VE+ + N
Sbjct: 117 LRALVADHRAQGSAMTILTGELPDATGYGRIVRGAD-GAVERIVEQKDATDAEKAIGEFN 175
Query: 174 AGIYLLN---PSVLDRI 187
+G+Y+ + P + RI
Sbjct: 176 SGVYVFDARAPELARRI 192
|
Length = 481 |
| >gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-09
Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 24/234 (10%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVML 61
K +IL GG GTRL P+T +V K L+ +KPMI + + L G+ ++++ Q
Sbjct: 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 60
Query: 62 NFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQM 121
L + + ++ + + P G A + D + D VL ++ + L +
Sbjct: 61 QQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGEDFIGGDPSA--LVLGDNIFYGHDLSDL 118
Query: 122 IEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYL--- 178
++ A++ +V +P +YGVV + G+ EKP N G+Y
Sbjct: 119 LKRAAARESGATVFAYQVSDPERYGVVEFDSN-GRAISIEEKPAQPKSNYAVTGLYFYDN 177
Query: 179 --------LNPSVLDRIELKPTSIEKEVFPE--IAVENKLFAMVLPGF-WMDIG 221
L PS R EL+ T + + E ++VE ++ G+ W+D G
Sbjct: 178 RVVEIARQLKPS--ARGELEITDLNRVYLEEGRLSVE-----LLGRGYAWLDTG 224
|
Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286 |
| >gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-09
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 8/175 (4%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
+I + G G+R + + PKPL++ KPMI IE+L + + +
Sbjct: 2 IIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICR-DEHNTKFH 60
Query: 64 LKEFEKKLEIKITCSQ-ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMI 122
L E K L T + + E LG A + LA D + +D +P + N D I E L +
Sbjct: 61 LDESLKLLAPNATVVELDGETLGAACTVLLAADLIDND--DPLLIFNCDQIVESDLLAFL 118
Query: 123 EFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIY 177
R + ++ P ++ V ++E G+V + E K + + AG+Y
Sbjct: 119 AAFRERDLDGGVLTFFSSHP-RWSYVKLDEN-GRVIETAE--KEPISDLATAGLY 169
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Length = 231 |
| >gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 6e-09
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 14/188 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
++L G GTR+R T PK L A + M+ H + A + +V+ + + E +
Sbjct: 7 VIVLAAGAGTRMRSDT---PKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAP 63
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
+ E +++I + Q+ E GT + A + L D V DV + L
Sbjct: 64 AVAELAPEVDIAV---QD-EQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLAD 119
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEK----PKNFVGNKINAGI 176
++ H G +++ T +D+P+ YG ++ ++ G+V VE+ P ++N+G+
Sbjct: 120 LVATHTAEGNAVTVLTTTLDDPTGYGRILRDQD-GEVTAIVEQKDATPSQRAIREVNSGV 178
Query: 177 YLLNPSVL 184
Y + +VL
Sbjct: 179 YAFDAAVL 186
|
Length = 482 |
| >gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 9e-09
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 24/206 (11%)
Query: 5 ILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFL 64
IL G GTR++ S+PK L K ++ +++ + + ++ + +Q E + L
Sbjct: 6 ILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSL 62
Query: 65 KEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMI 122
LE + LGT + L G+ VLN DV + L+ ++
Sbjct: 63 AH-LPGLEFVE----QQPQLGTGHAVQQLLPVLKGFEGD-LLVLNGDVPLLRPETLEALL 116
Query: 123 EFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE-------KPKNFVGNKINAG 175
HR + +++ ++ P YG V + VE+ VE + +N N+INAG
Sbjct: 117 NTHRSSNADVTLLTARLPNPKGYGRVFCDGN-NLVEQIVEDRDCTPAQRQN---NRINAG 172
Query: 176 IYLLNPSVLDRI--ELKPTSIEKEVF 199
IY N L + +L + +KE +
Sbjct: 173 IYCFNWPALAEVLPKLSSNNDQKEYY 198
|
Length = 450 |
| >gnl|CDD|133003 cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-08
Identities = 63/219 (28%), Positives = 94/219 (42%), Gaps = 43/219 (19%)
Query: 1 MKALILVGGFGTRLRPL-TLSVPKPLVD-FANKPMILHQIEALKAVGVTE---VVLAINY 55
+ +IL GG GTRL PL S PK + F +K ++ ++ LK + + VV Y
Sbjct: 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEY 60
Query: 56 QPEVMLNFLKEFEKKLEIKITCSQETEPLG--TAGPLALA-RDKLIDDSGEPFFVLNSD- 111
+ V E E I EP G TA +ALA D VL SD
Sbjct: 61 RFLVREQL---PEGLPEENII----LEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDH 113
Query: 112 VISEYP-----LKQMIEFHRGHGGEASIMVT---KVDEPS-KYGVVVMEETMG----KVE 158
+I + +K+ +E E + VT K P YG + E +G +V+
Sbjct: 114 LIEDVEAFLKAVKKAVEAAE----EGYL-VTFGIKPTRPETGYGYIEAGEKLGGGVYRVK 168
Query: 159 KFVEKP-----KNFV--GNKI-NAGIYLLNPSV-LDRIE 188
+FVEKP K ++ GN + N+GI+L L+ ++
Sbjct: 169 RFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELK 207
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. Length = 274 |
| >gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-08
Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 31/175 (17%)
Query: 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLA--------- 52
KA+I V G GTR+ P T ++PK ++ +KP+I + + A G+TE+VL
Sbjct: 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIE 69
Query: 53 ----INYQPEVML------NFLKEFEKKLEIKITCSQETEPLGTA-GPLALARDKLIDDS 101
+++ E ML L E + +T Q + L G L ++ D
Sbjct: 70 NHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGD- 128
Query: 102 GEPFFVLNSDVI-SEYP-------LKQMIEFHRGHGGEASIMVTKVDEPSKYGVV 148
EP V+ DVI EY L +MI G + IMV V + + YGVV
Sbjct: 129 -EPVAVILPDVILDEYESDLSQDNLAEMIR-RFDETGHSQIMVEPVADVTAYGVV 181
|
Length = 302 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-08
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 33/133 (24%)
Query: 118 LKQMIEFHRGHGGEASIMVTKVDE--PSKYGVVVMEETMGKVEKFVEKPKNFVGNKINA- 174
+ ++ HR G + ++ V VDE S +G++ ++ G++ +F EKPK G+++ A
Sbjct: 132 YRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDD-GRITEFSEKPK---GDELKAM 187
Query: 175 -----------------------GIYLLNPSVL-DRIELKPTSIE--KEVFPEIAVENKL 208
GIY+ + VL D + P + KE+ PE + K+
Sbjct: 188 AVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAIRDYKV 247
Query: 209 FAMVLPGFWMDIG 221
+ + G+W DIG
Sbjct: 248 QSYLFDGYWEDIG 260
|
Length = 429 |
| >gnl|CDD|221780 pfam12804, NTP_transf_3, MobA-like NTP transferase domain | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 27/143 (18%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
+IL GG +R+ K L+ KP++ ++ L+ EVV+ N
Sbjct: 1 GVILAGGRSSRMG-----GDKALLPLGGKPLLERVLDRLRPA-GDEVVVVTNRPE----- 49
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPL-----ALARDKLIDDSGEPFFVLNSDV--ISE 115
+ L + + +P GPL L + VL D+ ++
Sbjct: 50 -IAAALAGLGVPVVP----DPDPGQGPLAGLAAGLRAAP----DADAVLVLACDMPFLTP 100
Query: 116 YPLKQMIEFHRGHGGEASIMVTK 138
L++++ G + ++ V
Sbjct: 101 DLLRRLLAALEASGADIAVPVYD 123
|
This family includes the MobA protein (Molybdopterin-guanine dinucleotide biosynthesis protein A). The family also includes a wide range of other NTP transferase domain. Length = 178 |
| >gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 7e-07
Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 21/192 (10%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M +IL G GTR+ +PK L A KPM+ H I+A +G V L + +++
Sbjct: 6 MSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLL 62
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
L + + + E LGT + A DD E +L DV IS L
Sbjct: 63 KQTLA------DEPLNWVLQAEQLGTGHAMQQAAPFFADD--EDILMLYGDVPLISVETL 114
Query: 119 KQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEK----PKNFVGNKINA 174
+++ + + GG + V K+D P+ YG + E GKV VE+ + +IN
Sbjct: 115 QRLRD-AKPQGGIGLLTV-KLDNPTGYGRITREN--GKVVGIVEQKDATDEQRQIQEINT 170
Query: 175 GIYLLNPSVLDR 186
GI + N + L R
Sbjct: 171 GILVANGADLKR 182
|
Length = 456 |
| >gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 5e-06
Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 13/130 (10%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G +R+ K L+ KP++ H ++A A G++ V++ + + + +
Sbjct: 3 AIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRA 57
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
L + + E + ++ LA + L D+ + +L +D ++ L+
Sbjct: 58 ALAGLPVVV---VINPDWEEGMSSS--LAAGLEALPADA-DAVLILLADQPLVTAETLRA 111
Query: 121 MIEFHRGHGG 130
+I+ R G
Sbjct: 112 LIDAFREDGA 121
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 186 |
| >gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 8e-06
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAIN--YQPEV 59
A+IL G G+R+ +PK ++ KP++ H +EA A + E+V+ +
Sbjct: 3 AIILAAGSGSRMG---ADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLA 59
Query: 60 MLNFLKEFEKKLEI 73
K ++I
Sbjct: 60 KELAKYGLSKVVKI 73
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. Length = 218 |
| >gnl|CDD|225175 COG2266, COG2266, GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN 54
M A+I+ GG GTR+ KPL++ KP+I +EAL+ + V E+++AI+
Sbjct: 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGKPLIDRVLEALRKI-VDEIIVAIS 49
|
Length = 177 |
| >gnl|CDD|223906 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-05
Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
Query: 1 MKALILVGGFGTRLRPLTLSV-PKPLVDFA-NKPMILHQIEALKA-VGVTEVVLAINYQP 57
M +IL GG G+RL PL+ PK + + ++ ++ L + E ++ N
Sbjct: 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTN--- 58
Query: 58 EVMLNFLKEFEKKLEIKITCSQETEPLG--TAGPLALARDKLIDDSGEPFF-VLNSD-VI 113
E +KE +++I+ EP G TA +ALA + G+ VL SD VI
Sbjct: 59 EKYRFIVKEQLPEIDIENAAGIILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVI 118
Query: 114 SEYP-----LKQMIEFHRGHGGEASIMVT---KVDEPS------KYGVVVMEETMGKVEK 159
++ +K+ + E +VT P + G + E + KV++
Sbjct: 119 ADEEAFLNAVKKAEKA-----AEEGGIVTFGIPPTRPETGYGYIETGESIAENGVYKVDR 173
Query: 160 FVEKP 164
FVEKP
Sbjct: 174 FVEKP 178
|
Length = 333 |
| >gnl|CDD|224132 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAIN 54
A+IL GFG+R+ VPK ++ +P++ H +EA + E+V+ ++
Sbjct: 7 AVILAAGFGSRMG---NPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVS 56
|
Length = 230 |
| >gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAIN 54
A+I G GTR VPK ++ +P++ H ++A A + EVV+ ++
Sbjct: 2 AVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHALDAFLAHPAIDEVVVVVS 51
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 217 |
| >gnl|CDD|133000 cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 2e-04
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ +IL GG R+ K L++ KP++ H +E LK + V EVV++ N E
Sbjct: 1 ITGVILAGGKSRRM-----GGDKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQERY 54
Query: 61 LNF 63
Sbjct: 55 ALL 57
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. Length = 181 |
| >gnl|CDD|234670 PRK00155, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-04
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAIN--YQPEV 59
A+I G G+R+ PK + KP++ H +EA A + E+++ + +P+
Sbjct: 6 AIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDF 62
Query: 60 MLNFLKEFEK 69
L + K
Sbjct: 63 AELLLAKDPK 72
|
Length = 227 |
| >gnl|CDD|234725 PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 3e-04
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
+ +IL GG R+ V K L + KP+I H IE L V E+V+ N
Sbjct: 4 ITGVILAGGRSRRMG----GVDKGLQELNGKPLIQHVIERLAPQ-VDEIVINANRNLA 56
|
Length = 193 |
| >gnl|CDD|235473 PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-04
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLA 52
KPL D KPMI+ E G VV+A
Sbjct: 19 KPLADIGGKPMIVRVYERASKAGADRVVVA 48
|
Length = 245 |
| >gnl|CDD|223817 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLA 52
M +IL GG R+R K L+ +P+I H I+ L+ V+ A
Sbjct: 5 MTGVILAGGKSRRMRD------KALLPLNGRPLIEHVIDRLRPQVDVVVISA 50
|
Length = 192 |
| >gnl|CDD|133010 cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 5e-04
Identities = 19/31 (61%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 23 KPLVDFANKPMILHQIE-ALKAVGVTEVVLA 52
KPL D A KPMI H E A KA G+ EVV+A
Sbjct: 18 KPLADIAGKPMIQHVYERAKKAKGLDEVVVA 48
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. Length = 239 |
| >gnl|CDD|184007 PRK13368, PRK13368, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 7e-04
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 23 KPLVDFANKPMILHQIE-ALKAVGVTEVVLA 52
KPL+D KPMI H E A +A GV EV +A
Sbjct: 19 KPLLDILGKPMIQHVYERAAQAAGVEEVYVA 49
|
Length = 238 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK 31
M A+IL GG GTRL LT ++ KP V F K
Sbjct: 4 MLAMILAGGQGTRLGKLTKNIAKPAVPFGGK 34
|
Length = 380 |
| >gnl|CDD|237727 PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
+IL GG R+ K L+ KP+I ++ L+ + L IN P
Sbjct: 8 GVILAGGLSRRMN----GRDKALILLGGKPLIERVVDRLRPQ-FARIHLNINRDPA 58
|
Length = 366 |
| >gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 35/137 (25%)
Query: 121 MIEFHRGHGGEASIMVTKVDE--PSKYGVVVMEETMGKVEKFVEKPKNFVGNKINA---- 174
++ HR G + +I VDE S +G++ +++T G++ +F EKPK G+++ A
Sbjct: 141 FVQKHRESGADITIACLPVDESRASDFGLMKIDDT-GRIIEFSEKPK---GDELKAMQVD 196
Query: 175 --------------------GIYLLNPSVLDRI--ELKPTSIE--KEVFPEIAVEN-KLF 209
GIY+ VL ++ PT+ + E+ P E +
Sbjct: 197 TTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQ 256
Query: 210 AMVLPGFWMDIGQPKDY 226
A + G+W DIG K +
Sbjct: 257 AYLFDGYWEDIGTIKSF 273
|
Length = 436 |
| >gnl|CDD|233966 TIGR02665, molyb_mobA, molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
+IL GG R+ K LV+ KP+I H + L+ V+++ ++ N PE
Sbjct: 3 GVILAGGRARRMG----GRDKGLVELGGKPLIEHVLARLRPQ-VSDLAISANRNPE 53
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 186 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.002
Identities = 54/246 (21%), Positives = 90/246 (36%), Gaps = 74/246 (30%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLV---------DFANKPMILHQIEALKAVGVTEVVLAI 53
A+IL GG GTRL PLT KP V DF M+ G+ V +
Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMV--------NSGIRNVGVLT 52
Query: 54 NYQPEVMLNFLKE------FEKKLEIKITCSQETEP----LGTAGPLALARDK-LIDDSG 102
Y+ + + L K + I Q+ + GTA A+ ++ I+ S
Sbjct: 53 QYKSRSLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTAD--AIYQNLDYIERSD 110
Query: 103 EPFFV-LNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFV 161
+ + L+ D I ++M++FH G + +++
Sbjct: 111 PEYVLILSGDHIYNMDYREMLDFHIESGADITVVY------------------------- 145
Query: 162 EKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIE-------KEVFPEIAVENKLFAMVLP 214
K + GIY+ + +L IEL K++ P + + K++A
Sbjct: 146 ---------KASMGIYIFSKDLL--IELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFN 194
Query: 215 GFWMDI 220
G+W DI
Sbjct: 195 GYWADI 200
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.003
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANK 31
ALIL GG G+RL+ LT KP V F K
Sbjct: 18 ALILAGGRGSRLKELTDKRAKPAVYFGGK 46
|
Length = 425 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 100.0 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 100.0 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 100.0 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.97 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 99.97 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.97 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.97 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.97 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.97 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 99.97 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.97 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.97 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.97 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.97 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.96 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.96 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.96 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.96 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.96 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.94 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.94 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.93 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.92 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.92 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.91 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 99.88 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.87 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.86 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.85 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.85 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.85 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.84 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.84 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.83 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.82 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.82 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.82 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.81 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.81 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.8 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.8 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.8 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.79 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.78 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.75 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.75 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.74 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 99.73 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.73 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.71 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.7 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 99.69 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.68 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 99.66 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 99.65 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.63 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 99.59 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 99.4 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 99.3 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 99.19 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 99.13 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.11 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.82 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.76 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 98.75 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 98.64 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 98.48 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 98.35 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 98.27 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 98.25 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 97.99 | |
| COG1920 | 210 | Predicted nucleotidyltransferase, CobY/MobA/RfbA f | 97.45 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 97.24 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 97.22 | |
| PF01983 | 217 | CofC: Guanylyl transferase CofC like; InterPro: IP | 96.91 | |
| KOG2978 | 238 | consensus Dolichol-phosphate mannosyltransferase [ | 96.85 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 96.72 | |
| cd06427 | 241 | CESA_like_2 CESA_like_2 is a member of the cellulo | 96.69 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 96.44 | |
| cd04195 | 201 | GT2_AmsE_like GT2_AmsE_like is involved in exopoly | 96.35 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 96.06 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 96.04 | |
| cd04196 | 214 | GT_2_like_d Subfamily of Glycosyltransferase Famil | 96.02 | |
| cd02510 | 299 | pp-GalNAc-T pp-GalNAc-T initiates the formation of | 96.02 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 95.98 | |
| cd04187 | 181 | DPM1_like_bac Bacterial DPM1_like enzymes are rela | 95.97 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 95.96 | |
| PRK10714 | 325 | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi | 95.82 | |
| cd06421 | 234 | CESA_CelA_like CESA_CelA_like are involved in the | 95.76 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 95.71 | |
| cd06438 | 183 | EpsO_like EpsO protein participates in the methano | 95.71 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 95.66 | |
| cd04185 | 202 | GT_2_like_b Subfamily of Glycosyltransferase Famil | 95.55 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 95.39 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 95.3 | |
| cd02520 | 196 | Glucosylceramide_synthase Glucosylceramide synthas | 95.28 | |
| cd06433 | 202 | GT_2_WfgS_like WfgS and WfeV are involved in O-ant | 95.26 | |
| cd06435 | 236 | CESA_NdvC_like NdvC_like proteins in this family a | 94.85 | |
| TIGR03472 | 373 | HpnI hopanoid biosynthesis associated glycosyl tra | 94.72 | |
| PRK11204 | 420 | N-glycosyltransferase; Provisional | 94.69 | |
| PRK10073 | 328 | putative glycosyl transferase; Provisional | 94.68 | |
| cd02511 | 229 | Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 | 94.61 | |
| cd04192 | 229 | GT_2_like_e Subfamily of Glycosyltransferase Famil | 94.53 | |
| TIGR03111 | 439 | glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 | 94.43 | |
| PTZ00260 | 333 | dolichyl-phosphate beta-glucosyltransferase; Provi | 94.41 | |
| TIGR03469 | 384 | HonB hopene-associated glycosyltransferase HpnB. T | 94.36 | |
| cd04184 | 202 | GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot | 94.2 | |
| PRK14583 | 444 | hmsR N-glycosyltransferase; Provisional | 93.97 | |
| COG1215 | 439 | Glycosyltransferases, probably involved in cell wa | 93.89 | |
| cd06437 | 232 | CESA_CaSu_A2 Cellulose synthase catalytic subunit | 93.87 | |
| PRK10063 | 248 | putative glycosyl transferase; Provisional | 93.6 | |
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 93.58 | |
| cd02526 | 237 | GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr | 93.44 | |
| cd06913 | 219 | beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran | 93.43 | |
| cd06420 | 182 | GT2_Chondriotin_Pol_N N-terminal domain of Chondro | 92.87 | |
| PRK10018 | 279 | putative glycosyl transferase; Provisional | 92.55 | |
| KOG2388 | 477 | consensus UDP-N-acetylglucosamine pyrophosphorylas | 92.36 | |
| PF13641 | 228 | Glyco_tranf_2_3: Glycosyltransferase like family 2 | 92.18 | |
| PF10111 | 281 | Glyco_tranf_2_2: Glycosyltransferase like family 2 | 92.16 | |
| PRK11498 | 852 | bcsA cellulose synthase catalytic subunit; Provisi | 91.33 | |
| cd06436 | 191 | GlcNAc-1-P_transferase N-acetyl-glucosamine transf | 91.24 | |
| PRK13915 | 306 | putative glucosyl-3-phosphoglycerate synthase; Pro | 90.63 | |
| cd02522 | 221 | GT_2_like_a GT_2_like_a represents a glycosyltrans | 88.38 | |
| TIGR03030 | 713 | CelA cellulose synthase catalytic subunit (UDP-for | 88.25 | |
| PF13704 | 97 | Glyco_tranf_2_4: Glycosyl transferase family 2 | 87.56 | |
| PRK14716 | 504 | bacteriophage N4 adsorption protein B; Provisional | 86.1 | |
| COG1216 | 305 | Predicted glycosyltransferases [General function p | 84.7 | |
| cd04191 | 254 | Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon | 82.36 | |
| COG0299 | 200 | PurN Folate-dependent phosphoribosylglycinamide fo | 82.26 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 80.21 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 80.12 |
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=322.07 Aligned_cols=256 Identities=64% Similarity=1.047 Sum_probs=238.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHH-HHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF-LKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~-~~~~~~~~~~~v~~~~ 79 (256)
|+||||.||.|+||+|||..+|||+.||+|+|||.|++++|.++|+++|++.++++.+++..+ .+.|...+++++++..
T Consensus 10 vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~ 89 (371)
T KOG1322|consen 10 VKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEILAST 89 (371)
T ss_pred eeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEe
Confidence 799999999999999999999999999999999999999999999999999999998855544 4667777899999999
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
|.++.|+++.+..+.+.+-...+.+|+|++||++++.++++++++|.+++++.+++++++++++.||.+++|+++++|.+
T Consensus 90 eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~ 169 (371)
T KOG1322|consen 90 ETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIR 169 (371)
T ss_pred ccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEecCCCceeE
Confidence 99999999999999998866543389999999999999999999999999999999999999999999999996699999
Q ss_pred EeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHHhhhcc
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK 239 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~~~~~~ 239 (256)
|.|||....++.+++|+|+|+++.++.+...+.+++.+++|.+.++.+++++.++|+|+|||+|.||+.+...|++....
T Consensus 170 F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~ptSiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~ 249 (371)
T KOG1322|consen 170 FVEKPKDLVSNKINAGIYILNPEVLDRILLRPTSIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPK 249 (371)
T ss_pred ehhCchhhhhccccceEEEECHHHHhHhhhcccchhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcc
Confidence 99999988899999999999999999998888889999999999999999999999999999999999999999999988
Q ss_pred cCCcccccCceeccCCC
Q 046608 240 NSSSKLATGSNIIGNVL 256 (256)
Q Consensus 240 ~~~~~~~~~~~~~g~~~ 256 (256)
.+..+..+.+.|.|.|+
T Consensus 250 ~t~~r~~p~~~i~~nvl 266 (371)
T KOG1322|consen 250 YTSPRLLPGSKIVGNVL 266 (371)
T ss_pred cCCccccCCccccccEe
Confidence 88889888888888764
|
|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=281.09 Aligned_cols=242 Identities=30% Similarity=0.509 Sum_probs=214.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCC-hHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
||+||||||.||||.|+|...||+|+|+.+||||.|.|+.|..+|+++|.||+++. .+.+.+++.+ ++++++.+.+..
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGd-gs~~gv~itY~~ 79 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGD-GSDFGVDITYAV 79 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcC-ccccCcceEEEe
Confidence 89999999999999999999999999999999999999999999999999999984 6677777776 467799999999
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
|.++.|-++|+..+.++++++ +|++..||.++..++.++++.+.+...+++++..++++|++||++..|++ ++|..
T Consensus 80 Q~~p~GlA~Av~~a~~fv~~~---~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~-~~v~~ 155 (286)
T COG1209 80 QPEPDGLAHAVLIAEDFVGDD---DFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDED-GKVIG 155 (286)
T ss_pred cCCCCcHHHHHHHHHhhcCCC---ceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCC-CcEEE
Confidence 999999999999999999987 79999999988779999999988888899999999999999999999998 89999
Q ss_pred EeecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHH
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~ 233 (256)
+.|||..++|+++.+|+|.|++++|+.+..- ...-.+++.+.++++| .+......|.|.|+||+++|++|++.+
T Consensus 156 l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i 235 (286)
T COG1209 156 LEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFV 235 (286)
T ss_pred eEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHH
Confidence 9999999999999999999999999987532 1122378999999999 566667778999999999999999988
Q ss_pred HhhhcccCCccccc
Q 046608 234 LDFLQKNSSSKLAT 247 (256)
Q Consensus 234 ~~~~~~~~~~~~~~ 247 (256)
....+++..-.+.+
T Consensus 236 ~~~~~~~G~~~~~~ 249 (286)
T COG1209 236 RTVSKRQGFKIACP 249 (286)
T ss_pred HHHHhhcCCEEeCh
Confidence 87555544333333
|
|
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=286.29 Aligned_cols=232 Identities=73% Similarity=1.221 Sum_probs=209.0
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++.+..+|+++++|++++..+.+.+++.++....++.+.++.+
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIE 80 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccC
Confidence 89999999999999999999999999999999999999999999999999999999999999988654445777777767
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcC-CCCeEeE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEE-TMGKVEK 159 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~-~~~~v~~ 159 (256)
..+.|+++++..++..++..+ +++++++||++++.++.++++.|.++++++++++.+..+++.|+++..++ + ++|.+
T Consensus 81 ~~~~G~~~al~~a~~~~~~~~-~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~-~~v~~ 158 (233)
T cd06425 81 TEPLGTAGPLALARDLLGDDD-EPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENT-GRIER 158 (233)
T ss_pred CCCCccHHHHHHHHHHhccCC-CCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCC-CEEEE
Confidence 778999999999999997521 16999999999998999999999999999999998887788999999987 5 89999
Q ss_pred EeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
+.|||....++++++|+|+|++++|+.+.....+.+.++++.+++.+++.+++++|+|.||+||++|++|++.++
T Consensus 159 ~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 159 FVEKPKVFVGNKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred EEECCCCCCCCEEEEEEEEECHHHHHhcccCcccchhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 999998777889999999999999999877666667789999999899999999999999999999999998764
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=301.32 Aligned_cols=252 Identities=42% Similarity=0.703 Sum_probs=220.0
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.||||+|+|..+||||+|++|+|||+|+|+.|.++|++++++.+++..+.+.+++.+. ..+++++.++.+
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~-~~~~~~I~y~~e 80 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDG-EGLGVRITYVVE 80 (358)
T ss_pred ceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcc-cccCCceEEEec
Confidence 8999999999999999999999999999999999999999999999999999999999999999874 334788888999
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
..+.||++++..+.+.+..+ +|++++||.+++.++..+++.|+.+.+.+++......++..||.+..+.+.++|.++
T Consensus 81 ~~~lGTag~l~~a~~~l~~~---~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f 157 (358)
T COG1208 81 KEPLGTAGALKNALDLLGGD---DFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEF 157 (358)
T ss_pred CCcCccHHHHHHHHHhcCCC---cEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEE
Confidence 99999999999999999874 799999999999999999999998888888888888888899999988552699999
Q ss_pred eecCC--CCCCCeEEEEEEEeCHhhHHhcc-cCCCCcchhhHHHHHhcCc-EEEEEeCceEEecCCHHHHHHHHHHHHhh
Q 046608 161 VEKPK--NFVGNKINAGIYLLNPSVLDRIE-LKPTSIEKEVFPEIAVENK-LFAMVLPGFWMDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 161 ~ek~~--~~~~~~~~~Giy~~~~~~~~~l~-~~~~~~~~~~~~~l~~~~~-v~~~~~~~~~~di~t~~d~~~a~~~~~~~ 236 (256)
.|||. ...++++++|+|+|++++|+.+. ....+++.++++.+++.+. ++++.+.|+|+|||||+||.+|++.+++.
T Consensus 158 ~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~ 237 (358)
T COG1208 158 REKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG 237 (358)
T ss_pred EecCCCCCCCCceEEeEEEEECHHHhhhcccCCcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhc
Confidence 99994 45678999999999999999776 3456777789999999996 99999999999999999999999999864
Q ss_pred hcccCCcccccC------ceeccCCC
Q 046608 237 LQKNSSSKLATG------SNIIGNVL 256 (256)
Q Consensus 237 ~~~~~~~~~~~~------~~~~g~~~ 256 (256)
......+..+.. +.|+|||+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~i~gp~~ 263 (358)
T COG1208 238 DGKSPLGPIEEPVVIIRSAYIIGPVV 263 (358)
T ss_pred ccccccccccccccccccceEeCCEE
Confidence 443333333222 56677653
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=284.58 Aligned_cols=230 Identities=25% Similarity=0.425 Sum_probs=193.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhh------------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------ 68 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~------------ 68 (256)
|+|||||||.||||+|+|..+||+|+||+|+|+|+|+++.+.++|+++|+|++++..+.+.+++....
T Consensus 4 mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~ 83 (297)
T TIGR01105 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR 83 (297)
T ss_pred eEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcch
Confidence 89999999999999999999999999999999999999999999999999999999999999885421
Q ss_pred ---------hccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc--------cchHHHHHHHHhcCCc
Q 046608 69 ---------KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--------YPLKQMIEFHRGHGGE 131 (256)
Q Consensus 69 ---------~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~--------~~~~~~~~~~~~~~~~ 131 (256)
.++++++.++.|.++.|+++++.+|++.++.+ +|+|+.||++++ .++.++++.|.++++.
T Consensus 84 ~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~~---~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~ 160 (297)
T TIGR01105 84 QLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDN---PFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRS 160 (297)
T ss_pred hhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCCC---CEEEEECCeeccccccccchhHHHHHHHHHHHhCCc
Confidence 02356788888899999999999999999754 799999999886 3788999988767665
Q ss_pred eEEEEEecCCCcCceeEEEc----CCCC---eEeEEeecCCCC---CCCeEEEEEEEeCHhhHHhcccCC-----CCcch
Q 046608 132 ASIMVTKVDEPSKYGVVVME----ETMG---KVEKFVEKPKNF---VGNKINAGIYLLNPSVLDRIELKP-----TSIEK 196 (256)
Q Consensus 132 ~~i~~~~~~~~~~~~~v~~~----~~~~---~v~~~~ek~~~~---~~~~~~~Giy~~~~~~~~~l~~~~-----~~~~~ 196 (256)
.+++....++++.||++.++ ++ + +|.++.|||..+ .++++++|+|+|++++|+.+.... .....
T Consensus 161 ~~~~~~~~~~~~~yGvv~~~~~~d~~-g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~~lt 239 (297)
T TIGR01105 161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLT 239 (297)
T ss_pred EEEEEEcCCCCccceEEEecccccCC-CCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCCCeeeHH
Confidence 54444433578999999984 34 5 468899998643 468999999999999999885421 11235
Q ss_pred hhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 197 EVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 197 ~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
++++.+++.+++.++.++|.|+|||||++|.+|+..+.
T Consensus 240 d~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred HHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 89999999899999999999999999999999987764
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=275.99 Aligned_cols=229 Identities=41% Similarity=0.722 Sum_probs=199.7
Q ss_pred EEEEeCC--CCCccccCCCCCCCccceeCCcchHHHHHHHHHH-cCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 3 ALILVGG--FGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 3 aiIlaaG--~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~-~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
||||||| .|+||+|+|..+||+|+|++|+|||+|+|+.+.+ +|+++|+|++++..+.+.+++.+.....++.+.+..
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 6899999 8999999999999999999999999999999999 699999999999999999999865434467777777
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEec--CCCcCceeEEEc-CCCCe
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV--DEPSKYGVVVME-ETMGK 156 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~~~-~~~~~ 156 (256)
+.+..|+++++..+.+.+.....++|+|++||++++.++..+++.|.++++++++++... +++..||++..| ++ ++
T Consensus 81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~-g~ 159 (257)
T cd06428 81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPST-GE 159 (257)
T ss_pred CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCC-Ce
Confidence 777899999999999998532223799999999999999999999999988899888765 457889999988 55 89
Q ss_pred EeEEeecCCCCCCCeEEEEEEEeCHhhHHhccc---------------------CCCCcchhhHHHHHhcCcEEEEEeCc
Q 046608 157 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL---------------------KPTSIEKEVFPEIAVENKLFAMVLPG 215 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~---------------------~~~~~~~~~~~~l~~~~~v~~~~~~~ 215 (256)
|.++.|||....++++++|+|+|++++|+.+.+ ...++..++++.+++.+++.++.++|
T Consensus 160 v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g 239 (257)
T cd06428 160 VLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDD 239 (257)
T ss_pred EEEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccccccccccccccccccceeeehhhhhhHHhccCCEEEecCCC
Confidence 999999998777889999999999999987752 11234478999999989999999999
Q ss_pred eEEecCCHHHHHHHHHH
Q 046608 216 FWMDIGQPKDYITGLRL 232 (256)
Q Consensus 216 ~~~di~t~~d~~~a~~~ 232 (256)
+|.||+||++|.+|++.
T Consensus 240 ~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 240 FWSQIKTAGSAIYANRL 256 (257)
T ss_pred eeecCCCHHHHHhHhhc
Confidence 99999999999999875
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=275.38 Aligned_cols=232 Identities=39% Similarity=0.709 Sum_probs=200.0
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEc-cCChHHHHHHHHhhhhccCcEEEeec
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAI-NYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~-~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
||||||||.|+||+|+|...||+|+|++|+ |||+|+|+.+..+|++++++|+ ++..+.+.+++++.. .+++++.+..
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~-~~~~~i~~i~ 79 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY-KFGVKIEYIV 79 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG-GGTEEEEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc-cccccceeee
Confidence 799999999999999999999999999999 9999999999999999955555 577888999998743 3467788888
Q ss_pred cCCcCCCcHHHHHHHhhhcCCC-CCcEEEEeCCeecccchHHHHHHHHhcCC--ceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 80 ETEPLGTAGPLALARDKLIDDS-GEPFFVLNSDVISEYPLKQMIEFHRGHGG--EASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
+..+.|++++++.+++.+..+. .++|++++||++++.++..+++.|.+++. .+++...+..+++.||++.+|++ ++
T Consensus 80 ~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~ 158 (248)
T PF00483_consen 80 QPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDED-GR 158 (248)
T ss_dssp ESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETT-SE
T ss_pred cccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccccceeeeeccc-ee
Confidence 8888999999999999998863 12499999999999999999999998887 45666667778899999999988 89
Q ss_pred EeEEeecCCCCC-CCeEEEEEEEeCHhhHHhcc----c--CCCCcchhhHHHHHhcC-cEEEEEeCc--eEEecCCHHHH
Q 046608 157 VEKFVEKPKNFV-GNKINAGIYLLNPSVLDRIE----L--KPTSIEKEVFPEIAVEN-KLFAMVLPG--FWMDIGQPKDY 226 (256)
Q Consensus 157 v~~~~ek~~~~~-~~~~~~Giy~~~~~~~~~l~----~--~~~~~~~~~~~~l~~~~-~v~~~~~~~--~~~di~t~~d~ 226 (256)
|.++.|||.... ++++++|+|+|++++|..+. + ....+..++++.+++++ .+.++...+ +|+|||||++|
T Consensus 159 V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~ 238 (248)
T PF00483_consen 159 VIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDY 238 (248)
T ss_dssp EEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHH
T ss_pred EEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHH
Confidence 999999999776 78999999999999998872 1 23444578999999988 566778888 79999999999
Q ss_pred HHHHHHHHh
Q 046608 227 ITGLRLYLD 235 (256)
Q Consensus 227 ~~a~~~~~~ 235 (256)
++|++.+++
T Consensus 239 ~~a~~~~~~ 247 (248)
T PF00483_consen 239 LEANMDLLN 247 (248)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999998864
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=274.67 Aligned_cols=230 Identities=25% Similarity=0.423 Sum_probs=195.0
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhh------------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------ 68 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~------------ 68 (256)
|+|||+|||.|+||+|+|..+||+|+||+|+|+|+|+++.+.++|+++|+|++++..+.+.+++....
T Consensus 4 mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~ 83 (297)
T PRK10122 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR 83 (297)
T ss_pred eEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcchh
Confidence 79999999999999999999999999999999999999999999999999999999999999885310
Q ss_pred ---------hccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc--------cchHHHHHHHHhcCCc
Q 046608 69 ---------KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--------YPLKQMIEFHRGHGGE 131 (256)
Q Consensus 69 ---------~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~--------~~~~~~~~~~~~~~~~ 131 (256)
...++++.++.|.++.|+++++++++++++.+ +|+|+.||++++ .++.++++.|.+++++
T Consensus 84 ~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~~---~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~ 160 (297)
T PRK10122 84 QLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGDN---PFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS 160 (297)
T ss_pred hhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCCC---CEEEEECCeeccCccccccchhHHHHHHHHHHhCCc
Confidence 01256677788888999999999999999644 799999999875 3789999999888777
Q ss_pred eEEEEEecCCCcCceeEEEc----CCCC---eEeEEeecCCCC---CCCeEEEEEEEeCHhhHHhcccC-----CCCcch
Q 046608 132 ASIMVTKVDEPSKYGVVVME----ETMG---KVEKFVEKPKNF---VGNKINAGIYLLNPSVLDRIELK-----PTSIEK 196 (256)
Q Consensus 132 ~~i~~~~~~~~~~~~~v~~~----~~~~---~v~~~~ek~~~~---~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~ 196 (256)
.+++....+++..||.+.++ ++ + +|.++.|||..+ .++++++|+|+|++++|..+.+. ......
T Consensus 161 ~~~~~~~~~~~~~yGvv~~d~~~~~~-g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~lt 239 (297)
T PRK10122 161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLT 239 (297)
T ss_pred EEEEEECCCCCCCceEEEecCcccCC-CCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHH
Confidence 65555444578899999986 34 5 788999998643 36899999999999999988541 112235
Q ss_pred hhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 197 EVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 197 ~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
++++.+++.+++.++.++|.|+|||||++|.+|+..+.
T Consensus 240 d~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred HHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 88999999899999999999999999999999999883
|
|
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=268.08 Aligned_cols=228 Identities=28% Similarity=0.417 Sum_probs=195.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCC-hHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|++||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|++++++. .+.+.+++... ..+++.+.+..
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~-~~~~~~i~~~~ 79 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDG-SDLGIRITYAV 79 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhcc-cccCceEEEee
Confidence 89999999999999999999999999999999999999999999999999988764 47788888652 33467777777
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
+....|+++++..+++.++.+ +++++.||+++ +.++.++++.|.++++++++++.+..++..|+.+.+|++ ++|.
T Consensus 80 ~~~~~G~~~al~~a~~~~~~~---~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-g~v~ 155 (240)
T cd02538 80 QPKPGGLAQAFIIGEEFIGDD---PVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDEN-GRVL 155 (240)
T ss_pred CCCCCCHHHHHHHHHHhcCCC---CEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCC-CcEE
Confidence 777889999999999999754 79999999855 567999999998888888888888878888999999987 8999
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcCcEEEEEeC--ceEEecCCHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVENKLFAMVLP--GFWMDIGQPKDYITGLR 231 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~~v~~~~~~--~~~~di~t~~d~~~a~~ 231 (256)
++.|||....++++++|+|+|++++++.+..- ......++++.+++.+++.++.+. |+|+|||||++|.+|++
T Consensus 156 ~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~ 235 (240)
T cd02538 156 SIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASN 235 (240)
T ss_pred EEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHH
Confidence 99999987777899999999999999877421 112225899999988887777766 89999999999999998
Q ss_pred HH
Q 046608 232 LY 233 (256)
Q Consensus 232 ~~ 233 (256)
.+
T Consensus 236 ~~ 237 (240)
T cd02538 236 FV 237 (240)
T ss_pred HH
Confidence 65
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=272.00 Aligned_cols=235 Identities=22% Similarity=0.387 Sum_probs=200.0
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~-~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|+|||||||.||||+|+|..+||+|+|++|+|||+|+|+.+..+|+++|++++.+ ..+.+.+++.+ ++.+++.+.+..
T Consensus 4 ~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~-g~~~g~~i~y~~ 82 (292)
T PRK15480 4 RKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGLNLQYKV 82 (292)
T ss_pred eEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC-ccccCceeEEEE
Confidence 7899999999999999999999999999999999999999999999999987654 46778888875 345678888888
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
|..+.|+++++..+.+.++.+ +++++.||+++ +.++.++++.|.+.+.++++++...++++.||++..|++ ++|.
T Consensus 83 q~~~~Gta~Al~~a~~~i~~~---~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~-g~v~ 158 (292)
T PRK15480 83 QPSPDGLAQAFIIGEEFIGGD---DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQN-GTAI 158 (292)
T ss_pred CCCCCCHHHHHHHHHHHhCCC---CEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCC-CcEE
Confidence 888999999999999999754 58888999854 778999999998888889998888889999999999987 8999
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccC------CCCcchhhHHHHHhcCcEEE-EEeCc-eEEecCCHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK------PTSIEKEVFPEIAVENKLFA-MVLPG-FWMDIGQPKDYITGL 230 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~------~~~~~~~~~~~l~~~~~v~~-~~~~~-~~~di~t~~d~~~a~ 230 (256)
++.|||..+.++++++|+|+|++++++.+.+- ...+ .++++.+++++++.+ +...| .|+|+|||++|.+|+
T Consensus 159 ~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~i-td~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~ 237 (292)
T PRK15480 159 SLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEI-TDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEAS 237 (292)
T ss_pred EEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEh-HHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHH
Confidence 99999988888999999999999998887421 1223 688999998887644 45567 599999999999999
Q ss_pred HHHHhhhcccCC
Q 046608 231 RLYLDFLQKNSS 242 (256)
Q Consensus 231 ~~~~~~~~~~~~ 242 (256)
..+. .++.+++
T Consensus 238 ~~~~-~~~~~~g 248 (292)
T PRK15480 238 NFIA-TIEERQG 248 (292)
T ss_pred HHHH-HHHHHCC
Confidence 8775 4444444
|
|
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=271.41 Aligned_cols=238 Identities=23% Similarity=0.401 Sum_probs=200.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcc-CChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~-~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
||||||||.|+||+|+|..+||+|+|++|+|||+|+|+.+..+|+++|+|+++ +..+.+.+++.+ ++.+++++.+..|
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~~~q 79 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSYAVQ 79 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc-ccccCceEEEEEc
Confidence 68999999999999999999999999999999999999999999999998885 456778888865 3456888888888
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-cccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
.++.|+++++..+++.++.+ +++++.||++ ++.++.++++.|.+.+.++++++.+.+++..||++..|++ ++|.+
T Consensus 80 ~~~~Gta~al~~a~~~l~~~---~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~-g~V~~ 155 (286)
T TIGR01207 80 PSPDGLAQAFIIGEDFIGGD---PSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSN-GRAIS 155 (286)
T ss_pred cCCCCHHHHHHHHHHHhCCC---CEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCC-CeEEE
Confidence 88999999999999999764 6888899985 5778999999888888889999988889999999999987 89999
Q ss_pred EeecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcCcEEEEEe-Cce-EEecCCHHHHHHHHHH
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVENKLFAMVL-PGF-WMDIGQPKDYITGLRL 232 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~~v~~~~~-~~~-~~di~t~~d~~~a~~~ 232 (256)
+.|||..+.++++++|+|+|++++++.+..- ......++++.+++++.+.+... .|+ |.|+|||++|.+|+..
T Consensus 156 i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~ 235 (286)
T TIGR01207 156 IEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNF 235 (286)
T ss_pred EEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHH
Confidence 9999987788899999999999998876421 11123689999999887666555 575 9999999999999765
Q ss_pred HHhhhcccCCccc
Q 046608 233 YLDFLQKNSSSKL 245 (256)
Q Consensus 233 ~~~~~~~~~~~~~ 245 (256)
+ +.++++++-++
T Consensus 236 ~-~~~~~~~~~~~ 247 (286)
T TIGR01207 236 I-QTIEKRQGLKV 247 (286)
T ss_pred H-HHHHHhcCCEE
Confidence 5 55555555443
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=284.17 Aligned_cols=234 Identities=29% Similarity=0.422 Sum_probs=195.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccC-------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLE------- 72 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~------- 72 (256)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+|+.|.++|+++|+|++++..+.+.+++.+. ++++
T Consensus 4 m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 82 (380)
T PRK05293 4 MLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIG-SPWDLDRINGG 82 (380)
T ss_pred EEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCC-CcccccCCCCC
Confidence 8999999999999999999999999999999 899999999999999999999999999999998642 2222
Q ss_pred cEEE--eeccCC---cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEec--CCCcCc
Q 046608 73 IKIT--CSQETE---PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV--DEPSKY 145 (256)
Q Consensus 73 ~~v~--~~~~~~---~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~ 145 (256)
+.+. +..+.+ +.|++++++.+++.+....+++|+|++||++++.++.++++.|.++++++++++... +++..|
T Consensus 83 ~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~y 162 (380)
T PRK05293 83 VTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRF 162 (380)
T ss_pred EEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhcccc
Confidence 3333 333332 489999999999999642222799999999999999999999988888887776544 467889
Q ss_pred eeEEEcCCCCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhc-cc------CCCCcchhhHHHHHhcC-cEEEEEeCceE
Q 046608 146 GVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-EL------KPTSIEKEVFPEIAVEN-KLFAMVLPGFW 217 (256)
Q Consensus 146 ~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l-~~------~~~~~~~~~~~~l~~~~-~v~~~~~~~~~ 217 (256)
|.+..|++ ++|.++.|||....++++++|+|+|++++|..+ .+ ...++..++++.+++.+ ++.++..+++|
T Consensus 163 G~v~~d~~-g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w 241 (380)
T PRK05293 163 GIMNTDEN-MRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYW 241 (380)
T ss_pred CEEEECCC-CcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEE
Confidence 99999887 899999999976667899999999999988543 21 12345568999988775 79999999999
Q ss_pred EecCCHHHHHHHHHHHHhh
Q 046608 218 MDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 218 ~di~t~~d~~~a~~~~~~~ 236 (256)
.|+|||++|++|+..++..
T Consensus 242 ~digt~~~~~~a~~~~l~~ 260 (380)
T PRK05293 242 KDVGTIESLWEANMELLRP 260 (380)
T ss_pred EeCCCHHHHHHHHHHHcCC
Confidence 9999999999999887754
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=277.23 Aligned_cols=248 Identities=33% Similarity=0.507 Sum_probs=207.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~-~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
||||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.+++++++++++++ ..+.+.+++.+. ..+++.+.+..+
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 79 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEG-ERFGAKITYIVQ 79 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcc-cccCceEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999 888999998752 334666666667
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
..+.|++++++.+++.++.+ +|++++||++++.++.++++.|.++++++++++.+..++..|+.+..+++ ++|.++
T Consensus 80 ~~~~G~~~al~~a~~~l~~~---~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~-~~v~~~ 155 (353)
T TIGR01208 80 GEPLGLAHAVYTARDFLGDD---DFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDG-KRILKL 155 (353)
T ss_pred CCCCCHHHHHHHHHHhcCCC---CEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCC-CcEEEE
Confidence 77899999999999999654 69999999999989999999999888898988888778888998888765 789999
Q ss_pred eecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 161 VEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 161 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
.|||....++++++|+|+|++.+++.+... ......++++.+++.+ ++.++.++|+|.|||||+||++|++.++
T Consensus 156 ~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll 235 (353)
T TIGR01208 156 VEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLIL 235 (353)
T ss_pred EECCCCCCccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHH
Confidence 999987777899999999999888877421 1122368899998887 7999999999999999999999999999
Q ss_pred hhhcccCCcccccCceeccCC
Q 046608 235 DFLQKNSSSKLATGSNIIGNV 255 (256)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~g~~ 255 (256)
+.....-.+ +.+++.+.|||
T Consensus 236 ~~~~~~~~~-i~~~~~i~~~~ 255 (353)
T TIGR01208 236 DEVEREVQG-VDDESKIRGRV 255 (353)
T ss_pred hhcccccCC-cCCCCEEcCCE
Confidence 864322111 34444444443
|
Alternate name: dTDP-D-glucose synthase |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=263.01 Aligned_cols=226 Identities=31% Similarity=0.525 Sum_probs=194.0
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhc-cCcEE-----
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK-LEIKI----- 75 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~-~~~~v----- 75 (256)
+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|++++++..+.+.+++.+.... .++.+
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN 80 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence 689999999999999999999999999999999999999999999999999999999999998754210 02222
Q ss_pred --------------EeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCC
Q 046608 76 --------------TCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDE 141 (256)
Q Consensus 76 --------------~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (256)
.+..+.++.|+++++..+++.++.+ +|++++||++++.++.++++.|.+++++++++.. .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~e---~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~--~~ 155 (254)
T TIGR02623 81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDDE---AFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV--QP 155 (254)
T ss_pred ccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCCC---eEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe--cC
Confidence 2233446689999999999999743 7999999999999999999999998888887654 46
Q ss_pred CcCceeEEEcCCCCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecC
Q 046608 142 PSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIG 221 (256)
Q Consensus 142 ~~~~~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~ 221 (256)
+..||.+..|+ ++|+++.|||... ++++++|+|+|++++|+.+.....++..++++.++..+++.++.++|+|.|||
T Consensus 156 ~~~yG~v~~d~--~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIg 232 (254)
T TIGR02623 156 PGRFGALDLEG--EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQPMD 232 (254)
T ss_pred CCcccEEEECC--CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhccccCchhhhhHHHHHHhCCCEEEEeCCCEEecCC
Confidence 67899998874 6899999998543 57999999999999998887666677789999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 046608 222 QPKDYITGLRLYLD 235 (256)
Q Consensus 222 t~~d~~~a~~~~~~ 235 (256)
||++|.+|+..+.+
T Consensus 233 t~~~~~~~~~~~~~ 246 (254)
T TIGR02623 233 TLRDKNYLEELWES 246 (254)
T ss_pred chHHHHHHHHHHHc
Confidence 99999999887644
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=257.55 Aligned_cols=229 Identities=32% Similarity=0.558 Sum_probs=198.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++|++++++++++..+.+.+++.+.. .+++.+.++.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~-~~~~~i~~~~~ 79 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS-RFGVRITYILQ 79 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchh-hcCCeEEEEEC
Confidence 89999999999999999999999999999999999999999999999999999999899999887632 34566776677
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
....|+++++..++..+..+ ++++++||++++.++.++++.|..++.++++++.+..++..|+++..++ ++|.++
T Consensus 80 ~~~~g~~~sl~~a~~~i~~~---~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~ 154 (236)
T cd04189 80 EEPLGLAHAVLAARDFLGDE---PFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVDD--GRIVRL 154 (236)
T ss_pred CCCCChHHHHHHHHHhcCCC---CEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCCcccceEEEEcC--CeEEEE
Confidence 77889999999999998743 6999999999999999999998888888888888877778899888774 689999
Q ss_pred eecCCCCCCCeEEEEEEEeCHhhHHhcccCC-----CCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 161 VEKPKNFVGNKINAGIYLLNPSVLDRIELKP-----TSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 161 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~-----~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
.+||....+.++++|+|+|++++++.+.... .....++++.+++.+ ++.++.++++|+|||||+||.+|++.++
T Consensus 155 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l 234 (236)
T cd04189 155 VEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL 234 (236)
T ss_pred EECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHH
Confidence 9998766677999999999999988774211 112258899998776 6999999999999999999999999887
Q ss_pred h
Q 046608 235 D 235 (256)
Q Consensus 235 ~ 235 (256)
+
T Consensus 235 ~ 235 (236)
T cd04189 235 D 235 (236)
T ss_pred h
Confidence 5
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=255.01 Aligned_cols=222 Identities=34% Similarity=0.615 Sum_probs=194.7
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
|||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++++++++|++++..+.+.+++.+.. .++..+.+..+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~ 79 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY-RGGIRIYYVIEPE 79 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc-ccCceEEEEECCC
Confidence 699999999999999999999999999999999999999999999999999998888888887422 1245565666667
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEEee
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE 162 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~e 162 (256)
..|+++++..+++.+..+ +|++++||++++.++.++++.+...+.++++++.+..++..++.+.++++ ++|..+.+
T Consensus 80 ~~G~~~~l~~a~~~~~~~---~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e 155 (223)
T cd06915 80 PLGTGGAIKNALPKLPED---QFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGD-GRVIAFVE 155 (223)
T ss_pred CCcchHHHHHHHhhcCCC---CEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCC-CeEEEEEe
Confidence 899999999999999544 79999999999888999999888888888888888777788999999887 89999999
Q ss_pred cCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHH
Q 046608 163 KPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITG 229 (256)
Q Consensus 163 k~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a 229 (256)
|+....+.++++|+|+|++++++.+.....+++.++++.++..+++.++++++.|+|||||+||..|
T Consensus 156 k~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 156 KGPGAAPGLINGGVYLLRKEILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred CCCCCCCCcEEEEEEEECHHHHhhCCccCCChHHHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence 9876567799999999999999988655556677899999988899999999999999999999987
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=278.14 Aligned_cols=235 Identities=22% Similarity=0.417 Sum_probs=194.7
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCc--E-EE
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEI--K-IT 76 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~--~-v~ 76 (256)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+|+.|.++|+++|++++++..+.+.+++.......+. . +.
T Consensus 6 ~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK00844 6 VLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGLLGNYIT 85 (407)
T ss_pred eEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCccccCCCeEE
Confidence 6899999999999999999999999999998 999999999999999999999999999999999642111111 1 21
Q ss_pred eeccC------CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEec--CCCcCceeE
Q 046608 77 CSQET------EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV--DEPSKYGVV 148 (256)
Q Consensus 77 ~~~~~------~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v 148 (256)
..++. ...|+++++..+++.+..+..++|+|++||++++.++.+++++|.++++++++++... +++..||.+
T Consensus 86 ~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv 165 (407)
T PRK00844 86 PVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVI 165 (407)
T ss_pred ECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEE
Confidence 11211 1589999999999999654323699999999999999999999999988888877653 467889999
Q ss_pred EEcCCCCeEeEEeecCCCCC-------CCeEEEEEEEeCHhhH-Hhccc------CCCCcchhhHHHHHhcCcEEEEEe-
Q 046608 149 VMEETMGKVEKFVEKPKNFV-------GNKINAGIYLLNPSVL-DRIEL------KPTSIEKEVFPEIAVENKLFAMVL- 213 (256)
Q Consensus 149 ~~~~~~~~v~~~~ek~~~~~-------~~~~~~Giy~~~~~~~-~~l~~------~~~~~~~~~~~~l~~~~~v~~~~~- 213 (256)
..|++ ++|.++.|||.... +.++++|+|+|++++| +.+.+ +..++..++++.+++.+.+.++.+
T Consensus 166 ~~d~~-g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~ 244 (407)
T PRK00844 166 EVDPD-GRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFS 244 (407)
T ss_pred EECCC-CCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEEEEEcc
Confidence 99987 89999999986432 4699999999999996 44542 335566799999999888988865
Q ss_pred -----------CceEEecCCHHHHHHHHHHHHhh
Q 046608 214 -----------PGFWMDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 214 -----------~~~~~di~t~~d~~~a~~~~~~~ 236 (256)
.|+|.||+||++|++|++.+++.
T Consensus 245 ~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~ 278 (407)
T PRK00844 245 TNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSV 278 (407)
T ss_pred cccccccccCCCCEEEECCCHHHHHHHHHHHhCC
Confidence 58999999999999999999864
|
|
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=254.01 Aligned_cols=218 Identities=28% Similarity=0.465 Sum_probs=189.4
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|++++++..+.+.+++.+ +.+++.+.+..+.
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~~~ 78 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISDEP 78 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEecCC
Confidence 68999999999999999999999999999999999999999999999999999999999999876 2346777777666
Q ss_pred -CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHH--hcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 82 -EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHR--GHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 82 -~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
+..|+++++..+++.++.+ +|++++||++++.++.++++.|. ..+..+++...+.++...++.+..+++ ++|.
T Consensus 79 ~~~~g~~~~l~~~~~~~~~~---~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~v~ 154 (221)
T cd06422 79 DELLETGGGIKKALPLLGDE---PFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDAD-GRLR 154 (221)
T ss_pred CcccccHHHHHHHHHhcCCC---CEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCC-CcEe
Confidence 6789999999999999654 79999999999999999999887 455566666666666788999999987 8999
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITG 229 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a 229 (256)
.+.+||.. +++++|+|+|+++++..+.+... ...++++.+++.+++.++.+.|+|.|||||+||.+|
T Consensus 155 ~~~~~~~~---~~~~~Giyi~~~~~l~~l~~~~~-~~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 155 RGGGGAVA---PFTFTGIQILSPELFAGIPPGKF-SLNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred ecccCCCC---ceEEEEEEEEcHHHHhhCCcCcc-cHHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 99888753 68999999999999998875533 336899999988899999999999999999999875
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=260.82 Aligned_cols=230 Identities=25% Similarity=0.324 Sum_probs=193.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh-------c---
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK-------K--- 70 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~-------~--- 70 (256)
|++||+|||.|+||+|+|..+||+|+|++|+|+|+|+++.+.++|+++|+|++++..+.+.+++..... +
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 88 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR 88 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhh
Confidence 789999999999999999999999999999999999999999999999999999999999999964210 0
Q ss_pred -----------cCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc--------cchHHHHHHHHhcCCc
Q 046608 71 -----------LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--------YPLKQMIEFHRGHGGE 131 (256)
Q Consensus 71 -----------~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~--------~~~~~~~~~~~~~~~~ 131 (256)
.+..+.+..|....|+++++..+.+.+.++ +|+|+.||++++ .++.++++.|.+.+++
T Consensus 89 ~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~~---~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~ 165 (302)
T PRK13389 89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDE---PVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS 165 (302)
T ss_pred HHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCCC---CEEEEeCcceecccccccccccHHHHHHHHHhcCCC
Confidence 023455566677899999999999998644 799999999874 6799999999877765
Q ss_pred eEEEEEecCCCcCceeEEEcC------CCCeEeEEeecCC--CCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhh
Q 046608 132 ASIMVTKVDEPSKYGVVVMEE------TMGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEV 198 (256)
Q Consensus 132 ~~i~~~~~~~~~~~~~v~~~~------~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~ 198 (256)
++++.+.+++..||++..++ +.++|.++.|||. ...++++++|+|+|++++++.+... ...+..++
T Consensus 166 -tl~~~~~~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~~~~e~~l~d~ 244 (302)
T PRK13389 166 -QIMVEPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDA 244 (302)
T ss_pred -EEEEEEcccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHH
Confidence 67777777888999998863 1157999999997 3457899999999999999887432 12234689
Q ss_pred HHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 199 FPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 199 ~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
++.+++++++.++.+.|+|+|||||++|++|+..+.
T Consensus 245 i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 245 IDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred HHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 999999889999999999999999999999988764
|
|
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=253.56 Aligned_cols=225 Identities=30% Similarity=0.543 Sum_probs=190.6
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhc-cCcEEEe----
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK-LEIKITC---- 77 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~-~~~~v~~---- 77 (256)
|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+..+|+++|+|++++..+.+.+++.+.... .++.+.+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNR 80 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999764311 1122211
Q ss_pred ---ec------------cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCC
Q 046608 78 ---SQ------------ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEP 142 (256)
Q Consensus 78 ---~~------------~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 142 (256)
.. +....|++++++++++.++.++ +|++++||++++.++.++++.|..++++++++... .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~~--~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--~~ 156 (253)
T cd02524 81 IELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDDE--TFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--PP 156 (253)
T ss_pred eeeecccccccceeecccCcccccHHHHHHHHHhcCCCC--eEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec--CC
Confidence 11 1235678999999999996521 79999999999999999999998888888876653 46
Q ss_pred cCceeEEEcCCCCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecCC
Q 046608 143 SKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQ 222 (256)
Q Consensus 143 ~~~~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t 222 (256)
..|+.+.+|++ ++|..+.|||... +..+++|+|++++++++.+.+....+..++++.+++.+++.++.++|+|.||||
T Consensus 157 ~~~g~v~~d~~-g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t 234 (253)
T cd02524 157 GRFGELDLDDD-GQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCMDT 234 (253)
T ss_pred CcccEEEECCC-CCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccccchhhHHHHHHHHhcCCEEEEecCCEEEeCcC
Confidence 77899999988 8999999998644 468999999999999998876555555789999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 046608 223 PKDYITGLRLY 233 (256)
Q Consensus 223 ~~d~~~a~~~~ 233 (256)
++||.+|++.+
T Consensus 235 ~~~~~~~~~~~ 245 (253)
T cd02524 235 LRDKQTLEELW 245 (253)
T ss_pred HHHHHHHHHHH
Confidence 99999998766
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=255.61 Aligned_cols=230 Identities=29% Similarity=0.428 Sum_probs=189.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh------c----
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK------K---- 70 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~------~---- 70 (256)
|++||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|+|++++..+.+.+++.+... +
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKT 80 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccH
Confidence 899999999999999999999999999999999999999999999999999999999999888853210 0
Q ss_pred ----------cCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeeccc---chHHHHHHHHhcCCceEEEEE
Q 046608 71 ----------LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY---PLKQMIEFHRGHGGEASIMVT 137 (256)
Q Consensus 71 ----------~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~i~~~ 137 (256)
.++.+.+..+..+.|+++++..+++.++.+ +|+|++||+++.. ++.++++.|.+.+++. +++.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~~---~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 156 (267)
T cd02541 81 DLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDE---PFAVLLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVE 156 (267)
T ss_pred HHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCCC---ceEEEECCeEEeCCchHHHHHHHHHHHhCCCE-EEEE
Confidence 134566666777899999999999999754 7999999997653 4899999888766653 4443
Q ss_pred ec--CCCcCceeEEEcCC---CCeEeEEeecCC--CCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhc
Q 046608 138 KV--DEPSKYGVVVMEET---MGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVE 205 (256)
Q Consensus 138 ~~--~~~~~~~~v~~~~~---~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~ 205 (256)
.. +++..||++..|++ .++|.++.|||. ...+.++++|+|+|++++|..+... ......++++.+++.
T Consensus 157 ~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~ 236 (267)
T cd02541 157 EVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEE 236 (267)
T ss_pred EcChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhc
Confidence 33 35688999998851 258999999986 3456799999999999999988542 112235889999988
Q ss_pred CcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 206 NKLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 206 ~~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
+++.++.++|+|.|||||++|.+|+..+.
T Consensus 237 ~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 237 EPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred CCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 89999999999999999999999998763
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=267.65 Aligned_cols=233 Identities=24% Similarity=0.404 Sum_probs=193.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh--cc--C-cE
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK--KL--E-IK 74 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~--~~--~-~~ 74 (256)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+|+.+.++|+++|+|++++..+.+.+++.+... .+ + +.
T Consensus 4 ~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~~ 83 (429)
T PRK02862 4 VLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFVE 83 (429)
T ss_pred EEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEEE
Confidence 5799999999999999999999999999999 99999999999999999999999999999999974210 00 1 22
Q ss_pred EEeeccCC-----cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEec--CCCcCcee
Q 046608 75 ITCSQETE-----PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV--DEPSKYGV 147 (256)
Q Consensus 75 v~~~~~~~-----~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~ 147 (256)
+....+.. ..|+++++..+++.+...+.++|+|++||++++.++.++++.|.+.++++++++.+. +++..||+
T Consensus 84 i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~ 163 (429)
T PRK02862 84 VLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGL 163 (429)
T ss_pred EeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceE
Confidence 22222211 279999999999999643223799999999999899999999998888888888655 45788999
Q ss_pred EEEcCCCCeEeEEeecCCCC---------------------CCCeEEEEEEEeCHhhHHhc-cc--CCCCcchhhHHHHH
Q 046608 148 VVMEETMGKVEKFVEKPKNF---------------------VGNKINAGIYLLNPSVLDRI-EL--KPTSIEKEVFPEIA 203 (256)
Q Consensus 148 v~~~~~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~~~~l-~~--~~~~~~~~~~~~l~ 203 (256)
+..|++ ++|..+.|||... ...++++|+|+|++++|..+ .. ...++..++++.++
T Consensus 164 i~~d~~-g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~ 242 (429)
T PRK02862 164 MKTDDD-GRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAI 242 (429)
T ss_pred EEECCC-CcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHh
Confidence 999987 8999999998632 12488999999999998654 33 23455578999998
Q ss_pred hcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 204 VENKLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 204 ~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
+.+++.++.++|+|.|+|||++|++|++.++
T Consensus 243 ~~~~v~~~~~~g~w~digt~~~y~~an~~l~ 273 (429)
T PRK02862 243 RDYKVQSYLFDGYWEDIGTIEAFYEANLALT 273 (429)
T ss_pred ccCcEEEEEeCCEEEeCCCHHHHHHHHHHHH
Confidence 8889999999999999999999999999987
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=267.14 Aligned_cols=234 Identities=25% Similarity=0.377 Sum_probs=194.0
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcc-hHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh----ccCcEE
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKP-MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK----KLEIKI 75 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~p-li~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~----~~~~~v 75 (256)
|+|||||||.|+||+|+|..+||+|+|++|+| ||+|+++.+.++|+++|+|++++..+.+.+++.+... ..+..+
T Consensus 16 ~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~i 95 (425)
T PRK00725 16 TLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFREELGEFV 95 (425)
T ss_pred eEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccccCCCCeE
Confidence 47999999999999999999999999999997 9999999999999999999999999999999975211 001112
Q ss_pred Eee-------ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEec--CCCcCce
Q 046608 76 TCS-------QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV--DEPSKYG 146 (256)
Q Consensus 76 ~~~-------~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~ 146 (256)
.+. .+..+.|++++++.+++.+....+++|+|++||++++.++.++++.|..+++++++++... +++..||
T Consensus 96 ~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG 175 (425)
T PRK00725 96 DLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFG 175 (425)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccce
Confidence 111 1223589999999999999743223799999999999999999999999999888887665 5678999
Q ss_pred eEEEcCCCCeEeEEeecCCCC-------CCCeEEEEEEEeCHhhHH-hccc------CCCCcchhhHHHHHhcCcEEEEE
Q 046608 147 VVVMEETMGKVEKFVEKPKNF-------VGNKINAGIYLLNPSVLD-RIEL------KPTSIEKEVFPEIAVENKLFAMV 212 (256)
Q Consensus 147 ~v~~~~~~~~v~~~~ek~~~~-------~~~~~~~Giy~~~~~~~~-~l~~------~~~~~~~~~~~~l~~~~~v~~~~ 212 (256)
++..|++ ++|.++.|||... .+.++++|+|+|++++|. .+.+ ...++..++++.+++.+++.++.
T Consensus 176 ~v~~d~~-~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~ 254 (425)
T PRK00725 176 VMAVDEN-DRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHP 254 (425)
T ss_pred EEEECCC-CCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcEEEEE
Confidence 9999987 8999999998643 246999999999999865 4432 22456679999999989999998
Q ss_pred eC-----------ceEEecCCHHHHHHHHHHHHh
Q 046608 213 LP-----------GFWMDIGQPKDYITGLRLYLD 235 (256)
Q Consensus 213 ~~-----------~~~~di~t~~d~~~a~~~~~~ 235 (256)
+. ++|.|||||++|++|++.+++
T Consensus 255 ~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~ 288 (425)
T PRK00725 255 FSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLAS 288 (425)
T ss_pred ecCCccccccccCCeEEECCCHHHHHHHHHHHcC
Confidence 85 599999999999999999875
|
|
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=251.12 Aligned_cols=225 Identities=27% Similarity=0.406 Sum_probs=184.2
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh-----------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK----------- 69 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~----------- 69 (256)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++++|++++..+.+.+++.+...
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKE 80 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhH
Confidence 899999999999999999999999999999999999999999999999999999999999998863100
Q ss_pred ----c-----cCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeeccc---chHHHHHHHHhcCCceEEEEE
Q 046608 70 ----K-----LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY---PLKQMIEFHRGHGGEASIMVT 137 (256)
Q Consensus 70 ----~-----~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~i~~~ 137 (256)
. ....+.+..+....|+++++..+++.++.+ +|++++||+++.. ++.+++++|.+++++. +++.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~~---~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~ 156 (260)
T TIGR01099 81 ELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGDE---PFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVE 156 (260)
T ss_pred HHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCCC---CEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEE
Confidence 0 013455566667899999999999999544 7999999997653 6999999998888765 3333
Q ss_pred ec--CCCcCceeEEEcC---CCCeEeEEeecCC--CCCCCeEEEEEEEeCHhhHHhcccCC-----CCcchhhHHHHHhc
Q 046608 138 KV--DEPSKYGVVVMEE---TMGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKP-----TSIEKEVFPEIAVE 205 (256)
Q Consensus 138 ~~--~~~~~~~~v~~~~---~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~~-----~~~~~~~~~~l~~~ 205 (256)
.. +++..||++..+. +.++|+++.|||. ...++++++|+|+|++++|..+.... .....++++.+++.
T Consensus 157 ~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~ 236 (260)
T TIGR01099 157 EVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEK 236 (260)
T ss_pred ECChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhc
Confidence 33 3568899998862 2268999999985 23467899999999999999884321 12235789999988
Q ss_pred CcEEEEEeCceEEecCCHHHHHHH
Q 046608 206 NKLFAMVLPGFWMDIGQPKDYITG 229 (256)
Q Consensus 206 ~~v~~~~~~~~~~di~t~~d~~~a 229 (256)
+++.++.++|+|.|||||++|++|
T Consensus 237 ~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 237 ETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred CCEEEEEcceEEEeCCCHHHHhhC
Confidence 999999999999999999999875
|
Built to distinquish between the highly similar genes galU and galF |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=243.09 Aligned_cols=219 Identities=33% Similarity=0.647 Sum_probs=186.7
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
|||||||.|+||+|+|...||+|+|++|+|||+|+++.+..+++++++|++++..+.+.+++.+. ..+++.+.++.+..
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~~~~ 79 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVREDK 79 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-cccCccEEEEECCC
Confidence 68999999999999999999999999999999999999999999999999999888888888653 22355666666666
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEEee
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE 162 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~e 162 (256)
+.|+++++..+.+.. .+ +|+|++||++++.++.++++.+..++.++++++........|+++..++ ++|.++.|
T Consensus 80 ~~g~~~~l~~~~~~~-~~---~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~~e 153 (220)
T cd06426 80 PLGTAGALSLLPEKP-TD---PFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETEG--GRITSIEE 153 (220)
T ss_pred CCcchHHHHHHHhhC-CC---CEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEECC--CEEEEEEE
Confidence 789999988776655 22 7999999999988999999999888888888887765667799988874 79999999
Q ss_pred cCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHH
Q 046608 163 KPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 163 k~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
||.. +.++++|+|+|++++++.+.++......++++.+++.+ ++.+++++|+|.|||||+||.+|+
T Consensus 154 k~~~--~~~~~~Giy~~~~~~~~~i~~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 154 KPTH--SFLVNAGIYVLEPEVLDLIPKNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred CCCC--CCeEEEEEEEEcHHHHhhcCCCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 8863 46899999999999999887654433468899998876 699999999999999999999884
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=258.97 Aligned_cols=233 Identities=27% Similarity=0.445 Sum_probs=202.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh----cc--CcE
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK----KL--EIK 74 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~----~~--~~~ 74 (256)
-|+|||+|.|+||.|||+.++||-+||||+ +||++.|.+|.++|+.+|.|++.++...+.+|++...+ +. ++.
T Consensus 7 laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~~~v~ 86 (393)
T COG0448 7 LAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKNGGVF 86 (393)
T ss_pred EEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccccCcEE
Confidence 489999999999999999999999999987 79999999999999999999999999999999986321 11 233
Q ss_pred EEeec-----cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC--CCcCcee
Q 046608 75 ITCSQ-----ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD--EPSKYGV 147 (256)
Q Consensus 75 v~~~~-----~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~ 147 (256)
+.... +....|+++++++-+..+...+.++++++.||++|.-|+..+++.|.+.++++|+++.+++ +++.+|+
T Consensus 87 ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGi 166 (393)
T COG0448 87 ILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGV 166 (393)
T ss_pred EeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCc
Confidence 32211 1135789999999999998766679999999999999999999999999999999999885 5789999
Q ss_pred EEEcCCCCeEeEEeecCCC-CCCC-eEEEEEEEeCHhhHHhccc-------CCCCcchhhHHHHHhcCcEEEEEeCceEE
Q 046608 148 VVMEETMGKVEKFVEKPKN-FVGN-KINAGIYLLNPSVLDRIEL-------KPTSIEKEVFPEIAVENKLFAMVLPGFWM 218 (256)
Q Consensus 148 v~~~~~~~~v~~~~ek~~~-~~~~-~~~~Giy~~~~~~~~~l~~-------~~~~~~~~~~~~l~~~~~v~~~~~~~~~~ 218 (256)
+.+|++ ++|++|.|||.. +.++ ++++|+|+|+++.|..+.+ ...+|..++++.+++.+.+++|+++|||.
T Consensus 167 m~~D~~-~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~ 245 (393)
T COG0448 167 MNVDEN-GRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSGYWR 245 (393)
T ss_pred eEECCC-CCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCCEEEEeccchhh
Confidence 999999 999999999987 4444 8999999999999886632 23567789999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHh
Q 046608 219 DIGQPKDYITGLRLYLD 235 (256)
Q Consensus 219 di~t~~d~~~a~~~~~~ 235 (256)
||||.+.|++|+..+++
T Consensus 246 dVgTi~syy~aNmdLl~ 262 (393)
T COG0448 246 DVGTIDSYYEANMDLLS 262 (393)
T ss_pred hcccHHHHHHhhHHhcC
Confidence 99999999999999976
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=266.98 Aligned_cols=235 Identities=24% Similarity=0.369 Sum_probs=195.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh---c-----c
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK---K-----L 71 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~---~-----~ 71 (256)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+|+.+.++|++++++++++..+.+.+++.+... . .
T Consensus 4 ~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 83 (436)
T PLN02241 4 VAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFGDG 83 (436)
T ss_pred eEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccCCC
Confidence 7899999999999999999999999999996 99999999999999999999999999999999975210 0 0
Q ss_pred CcEEEeeccC-----CcCCCcHHHHHHHhhhcCCC---CCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC--C
Q 046608 72 EIKITCSQET-----EPLGTAGPLALARDKLIDDS---GEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD--E 141 (256)
Q Consensus 72 ~~~v~~~~~~-----~~~g~~~s~~~~~~~i~~~~---~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 141 (256)
++.+.+..+. .+.|+++++..++..+.... .++|++++||++++.++.++++.|.++++++++++.+.. +
T Consensus 84 ~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~ 163 (436)
T PLN02241 84 FVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESR 163 (436)
T ss_pred CEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhh
Confidence 1333333232 36899999999887775321 127999999999999999999999999999998887764 4
Q ss_pred CcCceeEEEcCCCCeEeEEeecCCCCC---------------------CCeEEEEEEEeCHhhHHhc-cc---CCCCcch
Q 046608 142 PSKYGVVVMEETMGKVEKFVEKPKNFV---------------------GNKINAGIYLLNPSVLDRI-EL---KPTSIEK 196 (256)
Q Consensus 142 ~~~~~~v~~~~~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~---~~~~~~~ 196 (256)
++.|+++..|++ ++|.++.|||.... .+++++|+|+|++++|..+ .. ....+..
T Consensus 164 ~~~ygvv~~d~~-~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~ 242 (436)
T PLN02241 164 ASDFGLMKIDDT-GRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGS 242 (436)
T ss_pred cCcceEEEECCC-CCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhH
Confidence 688999999887 89999999986432 3699999999999998654 21 1235567
Q ss_pred hhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHHhh
Q 046608 197 EVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 197 ~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~~~~ 236 (256)
++++.++..+ +++++.++|+|.||++|++|++|++.++..
T Consensus 243 dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~ 283 (436)
T PLN02241 243 EIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQ 283 (436)
T ss_pred HHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcC
Confidence 8999999885 899999999999999999999999999864
|
|
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=261.07 Aligned_cols=233 Identities=25% Similarity=0.405 Sum_probs=190.9
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhc-----cCcEEE
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK-----LEIKIT 76 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~-----~~~~v~ 76 (256)
|||||||.|+||+|+|...||+|+|++|+ |||+|+++.+.++|+++|+|++++..+.+.+++.+.... ..+++.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTLL 80 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEEEe
Confidence 69999999999999999999999999999 899999999999999999999999999999998742110 012222
Q ss_pred e-----eccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEec--CCCcCceeEE
Q 046608 77 C-----SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV--DEPSKYGVVV 149 (256)
Q Consensus 77 ~-----~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~ 149 (256)
. ..+....|+++++..++..+.....++|++++||++++.++.++++.|..++.++++++.+. .++..|+++.
T Consensus 81 ~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~ 160 (361)
T TIGR02091 81 PAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQ 160 (361)
T ss_pred CCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEE
Confidence 1 11122579999999999998643223799999999999999999999988887788777655 3567899999
Q ss_pred EcCCCCeEeEEeecCCCCCCC-------eEEEEEEEeCHhhHH-hccc------CCCCcchhhHHHHHhcCcEEEEEeCc
Q 046608 150 MEETMGKVEKFVEKPKNFVGN-------KINAGIYLLNPSVLD-RIEL------KPTSIEKEVFPEIAVENKLFAMVLPG 215 (256)
Q Consensus 150 ~~~~~~~v~~~~ek~~~~~~~-------~~~~Giy~~~~~~~~-~l~~------~~~~~~~~~~~~l~~~~~v~~~~~~~ 215 (256)
+|++ ++|..+.|||....+. ++++|+|+|+++++. .+.+ ...++..++++.+++++++.++.+++
T Consensus 161 ~d~~-~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~v~~~~~~~ 239 (361)
T TIGR02091 161 VDED-GRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAYLFSG 239 (361)
T ss_pred ECCC-CCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCceEEEeeCC
Confidence 9887 8999999998655444 899999999999874 4332 12345568999999989999999999
Q ss_pred eEEecCCHHHHHHHHHHHHhh
Q 046608 216 FWMDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 216 ~~~di~t~~d~~~a~~~~~~~ 236 (256)
+|.|||||++|++|+..+++.
T Consensus 240 ~w~digt~~~~~~a~~~~l~~ 260 (361)
T TIGR02091 240 YWRDVGTIDSFWEANMDLVSV 260 (361)
T ss_pred EEEECCCHHHHHHHHHHHhCC
Confidence 999999999999999998864
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=264.23 Aligned_cols=235 Identities=20% Similarity=0.295 Sum_probs=183.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChH-HHHHHHHhhhhccCcEE---
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEKKLEIKI--- 75 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~-~i~~~~~~~~~~~~~~v--- 75 (256)
|+|||||+|.|+||+|+|..+||||+|++|+ |||+|+++.|.++|+++|++++++..+ .+.+++.+. ..++++.
T Consensus 3 ~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~-~~~~~~~~~~ 81 (369)
T TIGR02092 3 MSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSG-REWDLHRKRD 81 (369)
T ss_pred EEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCC-CCCCcccccC
Confidence 7899999999999999999999999999999 999999999999999999999999876 999999752 2233331
Q ss_pred ---EeeccC-Cc--CCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC--CCcCce-
Q 046608 76 ---TCSQET-EP--LGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD--EPSKYG- 146 (256)
Q Consensus 76 ---~~~~~~-~~--~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~- 146 (256)
.+..+. .. .|++.++..+++.+....+++|+|++||++++.++.++++.|.++++++++++.+.+ ++..|+
T Consensus 82 ~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~ 161 (369)
T TIGR02092 82 GLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDT 161 (369)
T ss_pred cEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCc
Confidence 222222 23 356667888888885221127999999999999999999999998898988887765 567775
Q ss_pred eEEEcCCCCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhc-c----cCCCCcchhhHHHHHhcCcEEEEEeCceEEecC
Q 046608 147 VVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-E----LKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIG 221 (256)
Q Consensus 147 ~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l-~----~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~ 221 (256)
.+..+++ ++|..+.+++.......+++|+|+|+++.+..+ . ........++++.+++++++.++..+++|.|||
T Consensus 162 vv~~~~~-g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIg 240 (369)
T TIGR02092 162 ILRFDES-GKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKELNINAYEYTGYLANIN 240 (369)
T ss_pred EEEEcCC-CCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEEecCCceeEcC
Confidence 4556665 788777554433334578999999999876433 2 222223357888888777899999999999999
Q ss_pred CHHHHHHHHHHHHhhh
Q 046608 222 QPKDYITGLRLYLDFL 237 (256)
Q Consensus 222 t~~d~~~a~~~~~~~~ 237 (256)
||++|.+|++.+++..
T Consensus 241 t~~~l~~a~~~~l~~~ 256 (369)
T TIGR02092 241 SVKSYYKANMDLLDPQ 256 (369)
T ss_pred CHHHHHHHHHHHhCCc
Confidence 9999999998887643
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=239.36 Aligned_cols=214 Identities=40% Similarity=0.716 Sum_probs=188.8
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
|||||||.|+||+|+|...||+|+|++|+|||+|+++.+.+++++++++++++..+.+.+++.+.. .++..+.+..+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-~~~~~i~~~~~~~ 79 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS-KFGVNIEYVVQEE 79 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh-hcCceEEEEeCCC
Confidence 689999999999999999999999999999999999999999999999999998888888887531 1356666666667
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEEee
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE 162 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~e 162 (256)
+.|+++++..+++.+..+ +|++++||++++.++.++++.|.++++++++++.+.+++..|+++..|++ ++|.++.|
T Consensus 80 ~~g~~~al~~~~~~~~~~---~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e 155 (217)
T cd04181 80 PLGTAGAVRNAEDFLGDD---DFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDD-GRVTRFVE 155 (217)
T ss_pred CCccHHHHHHhhhhcCCC---CEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCC-CcEEEEEE
Confidence 789999999999999433 79999999999999999999999899899999988877889999999987 89999999
Q ss_pred cCCCCCCCeEEEEEEEeCHhhHHhcccC---CCCcchhhHHHHHhcCcEEEEEeCceEEecC
Q 046608 163 KPKNFVGNKINAGIYLLNPSVLDRIELK---PTSIEKEVFPEIAVENKLFAMVLPGFWMDIG 221 (256)
Q Consensus 163 k~~~~~~~~~~~Giy~~~~~~~~~l~~~---~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~ 221 (256)
||....+.++++|+|+|++++++.+... ...+..++++.+++++++.+++++|+|+|||
T Consensus 156 k~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 156 KPTLPESNLANAGIYIFEPEILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred CCCCCCCCEEEEEEEEECHHHHHhhhhcCCcccccHHHHHHHHHhcCCEEEEEcCCEEecCC
Confidence 9976666899999999999999887643 2456678999999889999999999999986
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=228.81 Aligned_cols=234 Identities=29% Similarity=0.423 Sum_probs=197.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhh------------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------ 68 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~------------ 68 (256)
+||||+|||.||||.|.|+..||-|+|+.+||+|+|+++.+.++|+++|++||+++...|++||....
T Consensus 5 rKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K~ 84 (291)
T COG1210 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGKR 84 (291)
T ss_pred cEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCHH
Confidence 58999999999999999999999999999999999999999999999999999998877777664211
Q ss_pred ------hc--cCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeeccc---chHHHHHHHHhcCCceEEEEE
Q 046608 69 ------KK--LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY---PLKQMIEFHRGHGGEASIMVT 137 (256)
Q Consensus 69 ------~~--~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~i~~~ 137 (256)
+. ..+.+.++.|.++.|.++|+.+|...++++ ||.|+.+|.++.. .+.++++.+.+.++. ++.+.
T Consensus 85 ~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~E---pFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s-vi~v~ 160 (291)
T COG1210 85 ELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDE---PFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVE 160 (291)
T ss_pred HHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCC---ceEEEeCCeeecCCchHHHHHHHHHHHhCCc-EEEEE
Confidence 11 146788999999999999999999999998 9999999997653 378999998888774 44444
Q ss_pred ec--CCCcCceeEE----EcCCCCeEeEEeecCC--CCCCCeEEEEEEEeCHhhHHhcccCCC-----CcchhhHHHHHh
Q 046608 138 KV--DEPSKYGVVV----MEETMGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKPT-----SIEKEVFPEIAV 204 (256)
Q Consensus 138 ~~--~~~~~~~~v~----~~~~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~~~-----~~~~~~~~~l~~ 204 (256)
++ ++.+.||++. .+.+..+|..+.|||. ..+|+++..|.|+|++++|+.|++... -...|.+..+++
T Consensus 161 ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G~ggEiQLTDai~~L~~ 240 (291)
T COG1210 161 EVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLK 240 (291)
T ss_pred ECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCCCCCEeeHHHHHHHHHh
Confidence 44 5679999998 3333348999999995 567999999999999999999976322 123688999999
Q ss_pred cCcEEEEEeCceEEecCCHHHHHHHHHHHHhhhc
Q 046608 205 ENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQ 238 (256)
Q Consensus 205 ~~~v~~~~~~~~~~di~t~~d~~~a~~~~~~~~~ 238 (256)
..++.++.+.|..+|+|++..|.+|+-.|..+..
T Consensus 241 ~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~~ 274 (291)
T COG1210 241 KEPVLAYVFEGKRYDCGSKLGYIKANVEFALRRP 274 (291)
T ss_pred hCcEEEEEecccEEccCCcccHHHHHHHHHhhCh
Confidence 9999999999999999999999999998876543
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=231.32 Aligned_cols=255 Identities=38% Similarity=0.707 Sum_probs=222.5
Q ss_pred CeEEEEeCC--CCCccccCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHHhhhhccCcEEEe
Q 046608 1 MKALILVGG--FGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITC 77 (256)
Q Consensus 1 m~aiIlaaG--~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~-~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~ 77 (256)
.+||||.|| +|+||+|++-+.||||+|++|.|||+|-|+.|.+. +..+|+++.=++.+....++......+++.+.+
T Consensus 3 ~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrY 82 (407)
T KOG1460|consen 3 VKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRY 82 (407)
T ss_pred eEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchhh
Confidence 379999999 79999999999999999999999999999999988 588999988888888888888877788899999
Q ss_pred eccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC--CCcCceeEEEcCCCC
Q 046608 78 SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD--EPSKYGVVVMEETMG 155 (256)
Q Consensus 78 ~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~~ 155 (256)
..++.+.|+++.++.-.+.+-..+++.|+|++||.-.+.++..+++.|.+.+...+++++... +.++||.++.|+.++
T Consensus 83 L~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~ 162 (407)
T KOG1460|consen 83 LREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTG 162 (407)
T ss_pred hccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcC
Confidence 999999999999999999887666668999999998888999999999999999999888774 578999999998889
Q ss_pred eEeEEeecCCCCCCCeEEEEEEEeCHhhHHhccc-----------------------CCCCcchhhHHHHHhcCcEEEEE
Q 046608 156 KVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL-----------------------KPTSIEKEVFPEIAVENKLFAMV 212 (256)
Q Consensus 156 ~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~-----------------------~~~~~~~~~~~~l~~~~~v~~~~ 212 (256)
+|..+.|||....++.+++|+|+|++++|+.+.+ +...+++|++..+...+.++++.
T Consensus 163 evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~ 242 (407)
T KOG1460|consen 163 EVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYE 242 (407)
T ss_pred ceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEe
Confidence 9999999999999999999999999999886531 01234678999999989999999
Q ss_pred eCceEEecCCHHHHHHHHHHHHhhhcccCCccccc--Cc--eeccCC
Q 046608 213 LPGFWMDIGQPKDYITGLRLYLDFLQKNSSSKLAT--GS--NIIGNV 255 (256)
Q Consensus 213 ~~~~~~di~t~~d~~~a~~~~~~~~~~~~~~~~~~--~~--~~~g~~ 255 (256)
..+.|-.|.|+..-+.|++.|+...+...++++.. ++ .|.|+|
T Consensus 243 t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdV 289 (407)
T KOG1460|consen 243 TTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDV 289 (407)
T ss_pred cccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeee
Confidence 99999999999999999999998776655555542 22 366665
|
|
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=221.32 Aligned_cols=215 Identities=27% Similarity=0.442 Sum_probs=168.7
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
|||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++|+++|+|++++..+.+.+++.+. .++.+++..++.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPDYA 77 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcchh
Confidence 69999999999999999999999999999999999999999999999999999988988888753 267777776666
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCC--cCceeEEEcCCCCeEeEE
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEP--SKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~v~~~~~~~~v~~~ 160 (256)
..|+++++..+++.+. + +|++++||++++. .+++.+.+++++.++++.+..+. ..++.. .+++ +++..+
T Consensus 78 ~~g~~~s~~~~~~~~~-~---~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~v~~~ 148 (229)
T cd02523 78 ETNNIYSLYLARDFLD-E---DFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKD-LDDA-GVLLGI 148 (229)
T ss_pred hhCcHHHHHHHHHHcC-C---CEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceee-ecCc-cceEee
Confidence 8899999999999993 3 7999999999864 45566666777888777663322 333332 2333 678888
Q ss_pred eecCCCCC-CCeEEEEEEEeCHhhHHhccc---------CCCCcchhhHHHHHhcCc--EEEEEeCceEEecCCHHHHHH
Q 046608 161 VEKPKNFV-GNKINAGIYLLNPSVLDRIEL---------KPTSIEKEVFPEIAVENK--LFAMVLPGFWMDIGQPKDYIT 228 (256)
Q Consensus 161 ~ek~~~~~-~~~~~~Giy~~~~~~~~~l~~---------~~~~~~~~~~~~l~~~~~--v~~~~~~~~~~di~t~~d~~~ 228 (256)
.+|+.... ..++++|+|+|+++++..+.+ ....+..++++.+++..+ +..+.. ++|.|||||+||.+
T Consensus 149 ~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~ 227 (229)
T cd02523 149 ISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLER 227 (229)
T ss_pred cccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHh
Confidence 88876543 458999999999999776532 123344688888887444 444444 79999999999998
Q ss_pred HH
Q 046608 229 GL 230 (256)
Q Consensus 229 a~ 230 (256)
|+
T Consensus 228 a~ 229 (229)
T cd02523 228 AE 229 (229)
T ss_pred hC
Confidence 73
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=218.82 Aligned_cols=216 Identities=21% Similarity=0.362 Sum_probs=168.6
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCCh---HHHHHHHHhhhhccCcEEEeec
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQP---EVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~---~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
+||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++|++++++++++.. ..+.+.+.... .++.+.+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~~--~~~~i~~~- 77 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLLA--PNATVVEL- 77 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHhC--CCCEEEEe-
Confidence 4899999999999999999999999999999999999999999999999986432 22333333221 14555444
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
+..+.|+++++..++..+..++ +|++++||++++.++.+++..|...+.+.++++... ....|+++..|++ ++|..
T Consensus 78 ~~~~~g~~~~l~~a~~~l~~~~--~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~v~~d~~-~~v~~ 153 (231)
T cd04183 78 DGETLGAACTVLLAADLIDNDD--PLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS-SHPRWSYVKLDEN-GRVIE 153 (231)
T ss_pred CCCCCcHHHHHHHHHhhcCCCC--CEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC-CCCCeEEEEECCC-CCEEE
Confidence 4468899999999999985322 799999999999888888887777666777666665 4567999999887 89999
Q ss_pred EeecCCCCCCCeEEEEEEEeCHh-hH-Hhccc--------CCCCcchhhHHHHHhcC-cEEEEEe-CceEEecCCHHHHH
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPS-VL-DRIEL--------KPTSIEKEVFPEIAVEN-KLFAMVL-PGFWMDIGQPKDYI 227 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~-~~-~~l~~--------~~~~~~~~~~~~l~~~~-~v~~~~~-~~~~~di~t~~d~~ 227 (256)
+.+|+. .+.++++|+|+|+++ .| +.+.. ....+..++++.+++.+ ++.++.+ .++|.|||||+||.
T Consensus 154 ~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl~ 231 (231)
T cd04183 154 TAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDLE 231 (231)
T ss_pred eEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhcC
Confidence 988854 456899999999987 43 33321 11123368999999887 6999999 57999999999973
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=223.06 Aligned_cols=228 Identities=27% Similarity=0.407 Sum_probs=193.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||.. ..||.|-+++|+||++|+|+.+...+++++++|+++..+.+.+.+.+.. .+.+..|
T Consensus 3 ~~~vILAAGkGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~-----~v~~v~Q 74 (460)
T COG1207 3 LSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD-----DVEFVLQ 74 (460)
T ss_pred ceEEEEecCCCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc-----CceEEEe
Confidence 5799999999999988 8999999999999999999999999999999999999999999987531 4667789
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-IS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
.++.||++++.+|++.+....++.+||++||. +. .+.++++++.+..+++.++++++..++|..||.+..+++ ++|.
T Consensus 75 ~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~-g~V~ 153 (460)
T COG1207 75 EEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGN-GEVT 153 (460)
T ss_pred cccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCC-CcEE
Confidence 99999999999999999543333699999999 33 344888999999999999999999999999999999998 8999
Q ss_pred EEeecCCCC----CCCeEEEEEEEeCHhhHHhc----cc---CCCCcchhhHHHHHhcC-cEEEEEeCc--eEEecCCHH
Q 046608 159 KFVEKPKNF----VGNKINAGIYLLNPSVLDRI----EL---KPTSIEKEVFPEIAVEN-KLFAMVLPG--FWMDIGQPK 224 (256)
Q Consensus 159 ~~~ek~~~~----~~~~~~~Giy~~~~~~~~~l----~~---~~~~~~~~~~~~l~~~~-~v~~~~~~~--~~~di~t~~ 224 (256)
++.|..+.. .-..+|+|+|+|....+..+ .+ +..++..|++..+..+| ++.++...+ ...-||+-.
T Consensus 154 ~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~ 233 (460)
T COG1207 154 AIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRV 233 (460)
T ss_pred EEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHH
Confidence 999976532 23489999999998765533 22 23556689999998887 788888875 578999999
Q ss_pred HHHHHHHHHHhhh
Q 046608 225 DYITGLRLYLDFL 237 (256)
Q Consensus 225 d~~~a~~~~~~~~ 237 (256)
+|.++++.+.++.
T Consensus 234 qLa~~e~~~q~r~ 246 (460)
T COG1207 234 QLAEAERIMQRRI 246 (460)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887644
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=237.68 Aligned_cols=228 Identities=20% Similarity=0.288 Sum_probs=183.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
+.+||||||.|+||++ ..||+|+|++|+|||+|+++.+.+++++++++++++..+.+.+++.... ..+.+..+
T Consensus 5 ~~avILAaG~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----~~~~~~~~ 77 (482)
T PRK14352 5 TAVIVLAAGAGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA----PEVDIAVQ 77 (482)
T ss_pred ceEEEEcCCCCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC----CccEEEeC
Confidence 4689999999999987 6899999999999999999999999999999999998888888876532 12334456
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-c-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-S-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|++++++.+++.+.....++|++++||+. + ..++.++++.+..++.+++++..+..++..|+.+..+++ ++|.
T Consensus 78 ~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~-g~V~ 156 (482)
T PRK14352 78 DEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQD-GEVT 156 (482)
T ss_pred CCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCC-CCEE
Confidence 677899999999999986422237999999993 3 456899999888887777777777788889999888877 8999
Q ss_pred EEeecCCCCC----CCeEEEEEEEeCHhhHHhc-c---cC---CCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHH
Q 046608 159 KFVEKPKNFV----GNKINAGIYLLNPSVLDRI-E---LK---PTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDY 226 (256)
Q Consensus 159 ~~~ek~~~~~----~~~~~~Giy~~~~~~~~~l-~---~~---~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~ 226 (256)
++.|||.... .+++++|+|+|++++|..+ . .. ...+..++++.+++.+ ++.+++++++|.|+++++++
T Consensus 157 ~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~ 236 (482)
T PRK14352 157 AIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRV 236 (482)
T ss_pred EEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHH
Confidence 9999987432 3478999999999998653 2 11 2233479999999887 79999999999999999888
Q ss_pred ------HHHHHHHHhh
Q 046608 227 ------ITGLRLYLDF 236 (256)
Q Consensus 227 ------~~a~~~~~~~ 236 (256)
..+++.+++.
T Consensus 237 ~~~~a~~~~~~~~~~~ 252 (482)
T PRK14352 237 QLAALGAELNRRIVEA 252 (482)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455544444
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=234.87 Aligned_cols=226 Identities=23% Similarity=0.375 Sum_probs=184.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.|+||++ ..||+|+|++|+|||+|+++.+.+++++++++++++..+.+.+++.+. ..+.+..+
T Consensus 4 ~~avIlAaG~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i~~~~~ 75 (459)
T PRK14355 4 LAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDVSFALQ 75 (459)
T ss_pred ceEEEEcCCCCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----CceEEEec
Confidence 5799999999999986 789999999999999999999999999999999999988888888652 13444456
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|+++++..+++.++.. .++|++++||+ +.+.++.++++.|..++.+++++..+..++..|+.+..|++ ++|.
T Consensus 76 ~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~-g~v~ 153 (459)
T PRK14355 76 EEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDAD-GRVL 153 (459)
T ss_pred CCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCC-CCEE
Confidence 67889999999999999642 12799999998 34566899999988888888888877777888999888887 8999
Q ss_pred EEeecCCCC----CCCeEEEEEEEeCHhhH-Hhccc------CCCCcchhhHHHHHhcC-cEEEEEeCce--EEecCCHH
Q 046608 159 KFVEKPKNF----VGNKINAGIYLLNPSVL-DRIEL------KPTSIEKEVFPEIAVEN-KLFAMVLPGF--WMDIGQPK 224 (256)
Q Consensus 159 ~~~ek~~~~----~~~~~~~Giy~~~~~~~-~~l~~------~~~~~~~~~~~~l~~~~-~v~~~~~~~~--~~di~t~~ 224 (256)
++.|||... .++++++|+|+|+++++ +.+.. .......++++.+++.+ ++.+++++++ |+|++||+
T Consensus 154 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~ 233 (459)
T PRK14355 154 RIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRA 233 (459)
T ss_pred EEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHH
Confidence 999876321 24688999999999864 43431 12223368999999887 6999999886 99999999
Q ss_pred HHHHHHHHHHhh
Q 046608 225 DYITGLRLYLDF 236 (256)
Q Consensus 225 d~~~a~~~~~~~ 236 (256)
+|++|++.+...
T Consensus 234 ~~~~a~~~l~~~ 245 (459)
T PRK14355 234 QLAEAARVLRRR 245 (459)
T ss_pred HHHHHHHHHHHH
Confidence 999998766543
|
|
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=207.01 Aligned_cols=221 Identities=28% Similarity=0.494 Sum_probs=161.9
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEc-cCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAI-NYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~-~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|+|||||||.|+||+| +.||||+.++|+++|.|.|++|.++|++++++|+ ++..+.+.+++.++. +..+++++.
T Consensus 4 ~kavILAAG~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~--~~~~iv~N~ 78 (239)
T COG1213 4 MKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYP--FNAKIVINS 78 (239)
T ss_pred eeEEEEecccccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCC--cceEEEeCC
Confidence 7999999999999999 8999999999999999999999999999999999 898999999988763 257788888
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEEEEEe-cCCC-cCceeEEEcCCCCe
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASIMVTK-VDEP-SKYGVVVMEETMGK 156 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~~~-~~~~-~~~~~v~~~~~~~~ 156 (256)
.+...+++.|++.|+++++.+ |++++||++|++. ++++++ ..+...++... .... .....+. +++ |+
T Consensus 79 ~y~ktN~~~Sl~~akd~~~~~----fii~~sD~vye~~~~e~l~~----a~~~~li~d~~~~~~~~~ea~kv~-~e~-G~ 148 (239)
T COG1213 79 DYEKTNTGYSLLLAKDYMDGR----FILVMSDHVYEPSILERLLE----APGEGLIVDRRPRYVGVEEATKVK-DEG-GR 148 (239)
T ss_pred CcccCCceeEEeeehhhhcCc----EEEEeCCEeecHHHHHHHHh----CcCCcEEEeccccccccCceeEEE-ecC-CE
Confidence 888888899999999999885 9999999999865 344444 32333333322 1111 2233444 444 89
Q ss_pred EeEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCC-CCcchhhHHHHHhcC--cEEEEE--eCc-eEEecCCHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKP-TSIEKEVFPEIAVEN--KLFAMV--LPG-FWMDIGQPKDYITGL 230 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~-~~~~~~~~~~l~~~~--~v~~~~--~~~-~~~di~t~~d~~~a~ 230 (256)
+.++.++.+.. +..++|++.++.+++....+.- .....+ +..+.... +...+. ..| .|+|||||||+.+|+
T Consensus 149 i~~igK~l~e~--~~e~iGi~~l~~~i~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar 225 (239)
T COG1213 149 IVEIGKDLTEY--DGEDIGIFILSDSIFEDTYELLVERSEYD-YREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERAR 225 (239)
T ss_pred EehhcCCcccc--cceeeeeEEechHHHHHHHHHHhhhhhHH-HHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHH
Confidence 99998877633 5789999999998776542110 000011 11122211 222222 225 899999999999999
Q ss_pred HHHHhhhcc
Q 046608 231 RLYLDFLQK 239 (256)
Q Consensus 231 ~~~~~~~~~ 239 (256)
+.+...+.+
T Consensus 226 ~~~~~~~~k 234 (239)
T COG1213 226 KYLVPNIKK 234 (239)
T ss_pred HHHHHHHHh
Confidence 998877655
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=230.79 Aligned_cols=223 Identities=20% Similarity=0.304 Sum_probs=176.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
++|||||||.|+||+. ..||+|+|++|+|||+|+++.|.+++++++++++++..+.+.+++... ++++ ..+
T Consensus 6 ~~aiILAaG~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----~~~~--v~~ 76 (456)
T PRK14356 6 TGALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE----DARF--VLQ 76 (456)
T ss_pred eeEEEEcCCCCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc----CceE--EEc
Confidence 5799999999999975 789999999999999999999999999999999999888877776532 3444 344
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-IS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
..+.|+++++..+++.+...+.+++++++||+ ++ ...+.++++.+. +++++++..+.+++..|+.+.. ++ ++|.
T Consensus 77 ~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~g~v~~-~~-g~V~ 152 (456)
T PRK14356 77 EQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPDPGAYGRVVR-RN-GHVA 152 (456)
T ss_pred CCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCCCCCceEEEE-cC-CeEE
Confidence 56789999999999998642223899999999 33 455888888765 5567888888888889998876 45 8999
Q ss_pred EEeecCCC------CCCCeEEEEEEEeCHhhHHhccc-------CCCCcchhhHHHHHhcC-cEEEEEeCc--eEEecCC
Q 046608 159 KFVEKPKN------FVGNKINAGIYLLNPSVLDRIEL-------KPTSIEKEVFPEIAVEN-KLFAMVLPG--FWMDIGQ 222 (256)
Q Consensus 159 ~~~ek~~~------~~~~~~~~Giy~~~~~~~~~l~~-------~~~~~~~~~~~~l~~~~-~v~~~~~~~--~~~di~t 222 (256)
++.||+.. +.+.++++|+|+|+++++..+.+ .......++++.+...+ ++.++.+.+ .|++|||
T Consensus 153 ~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~t 232 (456)
T PRK14356 153 AIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNT 232 (456)
T ss_pred EEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcC
Confidence 99998752 23468899999999998765421 11223468888888776 688888866 5799999
Q ss_pred HHHHHHHHHHHHhh
Q 046608 223 PKDYITGLRLYLDF 236 (256)
Q Consensus 223 ~~d~~~a~~~~~~~ 236 (256)
|+||.+|+..+..+
T Consensus 233 p~dl~~a~~~l~~~ 246 (456)
T PRK14356 233 PAELVRSEELLRAR 246 (456)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=227.45 Aligned_cols=219 Identities=21% Similarity=0.356 Sum_probs=173.8
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.|+||++ ..||+|+|++|+|||+|+++.+.+++++++++++++..+.+.+++... ++. +..+
T Consensus 8 ~~avILAaG~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~i~--~v~~ 78 (481)
T PRK14358 8 LDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQGS----GVA--FARQ 78 (481)
T ss_pred ceEEEECCCCCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhccC----CcE--EecC
Confidence 6899999999999987 689999999999999999999999999999999999888888887532 343 3456
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|++++++.+++.+...+. +|++++||+ +.+.+++++++.+.++++++++++.+.+++..||.+..|++ ++|.
T Consensus 79 ~~~~Gt~~al~~~~~~l~~~~~-~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~-g~v~ 156 (481)
T PRK14358 79 EQQLGTGDAFLSGASALTEGDA-DILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGAD-GAVE 156 (481)
T ss_pred CCcCCcHHHHHHHHHHhhCCCC-cEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCC-CCEE
Confidence 6678999999999998863212 699999999 33556899999998888888888888778888999999987 8999
Q ss_pred EEeecCCCCC----CCeEEEEEEEeC---HhhHHhcccC---CCCcchhhHHHHHhcC-cEEEEEeCceE--EecCCHHH
Q 046608 159 KFVEKPKNFV----GNKINAGIYLLN---PSVLDRIELK---PTSIEKEVFPEIAVEN-KLFAMVLPGFW--MDIGQPKD 225 (256)
Q Consensus 159 ~~~ek~~~~~----~~~~~~Giy~~~---~~~~~~l~~~---~~~~~~~~~~~l~~~~-~v~~~~~~~~~--~di~t~~d 225 (256)
++.|||.... ++++++|+|+|+ +++++.+... ...+..++++.+++.+ ++.++++.++| ..++++.+
T Consensus 157 ~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~ 236 (481)
T PRK14358 157 RIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAG 236 (481)
T ss_pred EEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHH
Confidence 9999986432 357899999999 4556666431 1223368999999887 69899888754 45555554
Q ss_pred HHHHH
Q 046608 226 YITGL 230 (256)
Q Consensus 226 ~~~a~ 230 (256)
+..+.
T Consensus 237 l~~~~ 241 (481)
T PRK14358 237 LAQLE 241 (481)
T ss_pred HHHHH
Confidence 44443
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=225.66 Aligned_cols=221 Identities=25% Similarity=0.395 Sum_probs=176.6
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|++||||||.|+||++ ..||+|+|++|+|||+|+++.+.+++++++++++++..+.+.+++.++ ++.+. .+
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~----~i~~~--~~ 71 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR----DVNWV--LQ 71 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC----CcEEE--Ec
Confidence 8999999999999997 789999999999999999999999999999999999888888887754 44443 34
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-IS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
..+.|++++++.+++.++.++ +|+++.||+ ++ +.++.++++.+.+. ..++++.+.+++..|+.+..+++ ++|.
T Consensus 72 ~~~~G~~~ai~~a~~~l~~~~--~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~g~v~~d~~-g~v~ 146 (451)
T TIGR01173 72 AEQLGTGHAVLQALPFLPDDG--DVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLPDPTGYGRIIREND-GKVT 146 (451)
T ss_pred CCCCchHHHHHHHHHhcCCCC--cEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecCCCCCCCEEEEcCC-CCEE
Confidence 556799999999999996432 799999999 33 45588888887654 36666667667777999988877 8999
Q ss_pred EEeecCCCCC----CCeEEEEEEEeCHhhHHh-ccc---C---CCCcchhhHHHHHhcC-cEEEEEeCce--EEecCCHH
Q 046608 159 KFVEKPKNFV----GNKINAGIYLLNPSVLDR-IEL---K---PTSIEKEVFPEIAVEN-KLFAMVLPGF--WMDIGQPK 224 (256)
Q Consensus 159 ~~~ek~~~~~----~~~~~~Giy~~~~~~~~~-l~~---~---~~~~~~~~~~~l~~~~-~v~~~~~~~~--~~di~t~~ 224 (256)
++.|||.... ...+++|+|+|++++|.. +.. . ...+..++++.++..+ ++.++.++++ |++++||+
T Consensus 147 ~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~ 226 (451)
T TIGR01173 147 AIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRL 226 (451)
T ss_pred EEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHH
Confidence 9999875321 247899999999998543 332 1 1122368888898887 6999998886 99999999
Q ss_pred HHHHHHHHHHh
Q 046608 225 DYITGLRLYLD 235 (256)
Q Consensus 225 d~~~a~~~~~~ 235 (256)
|+.+++..+..
T Consensus 227 dl~~~~~~l~~ 237 (451)
T TIGR01173 227 QLAQLERILQR 237 (451)
T ss_pred HHHHHHHHHHH
Confidence 99998776654
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=204.84 Aligned_cols=213 Identities=25% Similarity=0.415 Sum_probs=171.1
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
|||||||.|+||++ ..||+|+|++|+|||+|+++.+.++++++++++++++.+.+.+++..+ ++.+. .+..
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~~----~~~~~--~~~~ 71 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANP----NVEFV--LQEE 71 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCCC----CcEEE--ECCC
Confidence 69999999999986 689999999999999999999999999999999998888888777652 45443 3455
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCee--cccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
..|+++++..++..++.. .++|++++||+. ...++.++++.+.+.++++++.+.+..++..++.+..+++ ++|.++
T Consensus 72 ~~g~~~ai~~a~~~~~~~-~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~v~~~ 149 (229)
T cd02540 72 QLGTGHAVKQALPALKDF-EGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGN-GKVLRI 149 (229)
T ss_pred CCCCHHHHHHHHHhhccC-CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCC-CCEEEE
Confidence 689999999999999641 127999999993 3566899999888777778887777777888998888877 899999
Q ss_pred eecCCCCC----CCeEEEEEEEeCHhhHHh-ccc------CCCCcchhhHHHHHhcC-cEEEEEeCc--eEEecCCHHHH
Q 046608 161 VEKPKNFV----GNKINAGIYLLNPSVLDR-IEL------KPTSIEKEVFPEIAVEN-KLFAMVLPG--FWMDIGQPKDY 226 (256)
Q Consensus 161 ~ek~~~~~----~~~~~~Giy~~~~~~~~~-l~~------~~~~~~~~~~~~l~~~~-~v~~~~~~~--~~~di~t~~d~ 226 (256)
.+|+.... ..+.++|+|+|+++.+.. +.. +...+..++++.+++.+ ++.++.++| .|+.|+||.|+
T Consensus 150 ~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 150 VEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 99874322 268899999999876543 432 12223468999999877 699999986 69999999874
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=203.91 Aligned_cols=183 Identities=26% Similarity=0.451 Sum_probs=152.3
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccC-------cE
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLE-------IK 74 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~-------~~ 74 (256)
|||||||.|+||+|+|...||+|+|++|+ |||+|+++.+..+|+++++|++++..+.+.+++.+. ..++ +.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~ 79 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGGLF 79 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCCEE
Confidence 68999999999999999999999999998 999999999999999999999999999999998752 1122 33
Q ss_pred EEee----ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEE
Q 046608 75 ITCS----QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVM 150 (256)
Q Consensus 75 v~~~----~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~ 150 (256)
+... .+....|+++++..+++.++..+.++|+|++||++++.++.++++.|.++++++++++.
T Consensus 80 ~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------------- 146 (200)
T cd02508 80 ILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------------- 146 (200)
T ss_pred EeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-------------
Confidence 4332 13467899999999999996422237999999999999999999999888877776553
Q ss_pred cCCCCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhc-cc----CCCCcchhhHHHHHhcCcEEEEEeCceEEec
Q 046608 151 EETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-EL----KPTSIEKEVFPEIAVENKLFAMVLPGFWMDI 220 (256)
Q Consensus 151 ~~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l-~~----~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di 220 (256)
+++|+|+|+++++..+ .. +...+.+++++.+++.+++.++.++|+|.||
T Consensus 147 ---------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 147 ---------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred ---------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcEEEEEeCCeEecC
Confidence 5789999999988543 32 2445668999999988999999999999986
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=220.57 Aligned_cols=240 Identities=21% Similarity=0.326 Sum_probs=177.7
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.|+||++ .+||+|+|++|+|||+|+++.+.++ +++++|++++..+.+.+++.+... ++++....+
T Consensus 3 ~~aiIlAaG~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~~--~v~~~~~~~ 76 (430)
T PRK14359 3 LSIIILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYFP--GVIFHTQDL 76 (430)
T ss_pred ccEEEEcCCCCccCCC---CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcCC--ceEEEEecC
Confidence 5799999999999987 8999999999999999999999987 789999999999999888875421 455554444
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
....|+++++..+.. ..+ +|++++||.++.. ...++.+.+.++++++.+.+.+++..|+.+..+ + ++|..+
T Consensus 77 ~~~~gt~~al~~~~~--~~d---~vlv~~gD~p~~~--~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~d-~-g~v~~i 147 (430)
T PRK14359 77 ENYPGTGGALMGIEP--KHE---RVLILNGDMPLVE--KDELEKLLENDADIVMSVFHLADPKGYGRVVIE-N-GQVKKI 147 (430)
T ss_pred ccCCCcHHHHhhccc--CCC---eEEEEECCccCCC--HHHHHHHHhCCCCEEEEEEEcCCCccCcEEEEc-C-CeEEEE
Confidence 456788888876422 122 7999999994421 233444444566777777777778789987765 4 799999
Q ss_pred eecCCCC----CCCeEEEEEEEeCHhhHHhccc-------CCCCcchhhHHHHHhcC-cEEEEEeCc-eEEecCCHHHHH
Q 046608 161 VEKPKNF----VGNKINAGIYLLNPSVLDRIEL-------KPTSIEKEVFPEIAVEN-KLFAMVLPG-FWMDIGQPKDYI 227 (256)
Q Consensus 161 ~ek~~~~----~~~~~~~Giy~~~~~~~~~l~~-------~~~~~~~~~~~~l~~~~-~v~~~~~~~-~~~di~t~~d~~ 227 (256)
.|++... ...+.++|+|+|++++|..+.. ....+..++++.+++.+ ++.++..++ +|.|||||+||.
T Consensus 148 ~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~ 227 (430)
T PRK14359 148 VEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELA 227 (430)
T ss_pred EECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHH
Confidence 9887532 2357899999999999886532 11223468888888876 788888874 899999999999
Q ss_pred HHHHHHHhhhccc---------C--CcccccCceeccCC
Q 046608 228 TGLRLYLDFLQKN---------S--SSKLATGSNIIGNV 255 (256)
Q Consensus 228 ~a~~~~~~~~~~~---------~--~~~~~~~~~~~g~~ 255 (256)
+|+..+..++... . ..-+.+++.|.|+|
T Consensus 228 ~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~ 266 (430)
T PRK14359 228 KAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGEC 266 (430)
T ss_pred HHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCce
Confidence 9987776554321 1 12255666666654
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=221.33 Aligned_cols=225 Identities=20% Similarity=0.282 Sum_probs=174.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
+.|||||||.|+||++ ..||+|+|++|+|||+|+++.+..++++++++++++..+.+.+++.++ +..+.+..+
T Consensus 6 ~~aiILAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~~~~~~~~~ 78 (446)
T PRK14353 6 CLAIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI----APDAEIFVQ 78 (446)
T ss_pred ceEEEEcCCCCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc----CCCceEEEc
Confidence 4799999999999985 679999999999999999999999999999999999888888887653 222233345
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ecc-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-ISE-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|+++++..+++.+.... ++|++++||+ +++ ..+.++++.+ ..+.++++...+..++..|+.+.. ++ ++|.
T Consensus 79 ~~~~G~~~sl~~a~~~l~~~~-~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~~~~~~~g~~~~-~~-g~v~ 154 (446)
T PRK14353 79 KERLGTAHAVLAAREALAGGY-GDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRAADPTGYGRLIV-KG-GRLV 154 (446)
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEeCCCCcceEEEE-CC-CeEE
Confidence 567899999999999885211 2799999999 444 4477887744 455678888888778888988777 45 7999
Q ss_pred EEeecCCCC----CCCeEEEEEEEeCHhhH-Hhccc---C---CCCcchhhHHHHHhcC-cEEEEEeCc-eEEecCCHHH
Q 046608 159 KFVEKPKNF----VGNKINAGIYLLNPSVL-DRIEL---K---PTSIEKEVFPEIAVEN-KLFAMVLPG-FWMDIGQPKD 225 (256)
Q Consensus 159 ~~~ek~~~~----~~~~~~~Giy~~~~~~~-~~l~~---~---~~~~~~~~~~~l~~~~-~v~~~~~~~-~~~di~t~~d 225 (256)
++.|||... .+.++++|+|+|+++.+ +.+.+ . ...+..++++.+++.+ ++.++..++ .|+||+||+|
T Consensus 155 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~d 234 (446)
T PRK14353 155 AIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAE 234 (446)
T ss_pred EEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHH
Confidence 999997532 13588999999998665 33321 1 1123367889998877 698998875 6999999999
Q ss_pred HHHHHHHHHhh
Q 046608 226 YITGLRLYLDF 236 (256)
Q Consensus 226 ~~~a~~~~~~~ 236 (256)
|..|+..+..+
T Consensus 235 l~~a~~~~~~~ 245 (446)
T PRK14353 235 LAEAEAVWQAR 245 (446)
T ss_pred HHHHHHHHHHH
Confidence 99999766543
|
|
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-30 Score=203.25 Aligned_cols=180 Identities=21% Similarity=0.344 Sum_probs=145.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhc-c---CcEEE
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK-L---EIKIT 76 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~-~---~~~v~ 76 (256)
|+|||+|||.|+||+|+|..+||+|+||+|+|||+|+++++.++|+++|+|++++..+.+.+++++.... . +..+.
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~ 80 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVI 80 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999874321 0 13455
Q ss_pred eeccCCcCCCcHHHHHH--HhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhc-----CCceEEEEEecCCCc------
Q 046608 77 CSQETEPLGTAGPLALA--RDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGH-----GGEASIMVTKVDEPS------ 143 (256)
Q Consensus 77 ~~~~~~~~g~~~s~~~~--~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~------ 143 (256)
+..+.+..|+++++... ...+.+ +|+++.||++++.++.++++.|.++ +++++++..+..++.
T Consensus 81 ~~~~~~~~~~~~al~~~~~~~~~~~----~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~ 156 (217)
T cd04197 81 IIMSEDCRSLGDALRDLDAKGLIRG----DFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTG 156 (217)
T ss_pred EEeCCCcCccchHHHHHhhccccCC----CEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCC
Confidence 55566677788877543 333432 6999999999999999999999873 777888877765543
Q ss_pred CceeEEEcCCCCeEeEEeecCCCCC--------------------CCeEEEEEEEeCHhhH
Q 046608 144 KYGVVVMEETMGKVEKFVEKPKNFV--------------------GNKINAGIYLLNPSVL 184 (256)
Q Consensus 144 ~~~~v~~~~~~~~v~~~~ek~~~~~--------------------~~~~~~Giy~~~~~~~ 184 (256)
.++++.+++++++|..+.|||.... +++.++|+|+|+++++
T Consensus 157 ~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 157 EEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred CceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 2567888765479999999986432 5788999999998763
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=210.83 Aligned_cols=221 Identities=24% Similarity=0.305 Sum_probs=161.7
Q ss_pred CeEEEEeCCCCCccccCCC-CCCCccceeCC-cchHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHHhhhhccCcEEE
Q 046608 1 MKALILVGGFGTRLRPLTL-SVPKPLVDFAN-KPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKIT 76 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~-~~pK~ll~i~g-~pli~~~l~~l~~~~-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~ 76 (256)
|++||||||.|+||+|+|. ..||+|+|++| +|||+++++++...+ +++|+|++++.. +.+.+++... ...+.
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~----~~~~~ 76 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEG----LPEEN 76 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhc----CCCce
Confidence 8999999999999999996 79999999988 999999999999984 999999998764 4455666541 12233
Q ss_pred eeccCCcCCCcHHHHHHHhhhcCC-CCCcEEEEeCCeecc--cchHHHHHHHHh---cCCceEEEEEecCCCcCceeEEE
Q 046608 77 CSQETEPLGTAGPLALARDKLIDD-SGEPFFVLNSDVISE--YPLKQMIEFHRG---HGGEASIMVTKVDEPSKYGVVVM 150 (256)
Q Consensus 77 ~~~~~~~~g~~~s~~~~~~~i~~~-~~~~~lv~~~D~~~~--~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~v~~ 150 (256)
++.+....||+.++..++..+... .++.++|++||+++. .++.+.++.+.. .+..+++.+.+......||++..
T Consensus 77 ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~ 156 (274)
T cd02509 77 IILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEA 156 (274)
T ss_pred EEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEe
Confidence 345677889999999999988632 122799999999775 446666654332 55677777777666688999999
Q ss_pred cCCC-C---eEeEEeecCCCC--------CCCeEEEEEEEeCHhhHHhc-ccC----------------C---CCcchhh
Q 046608 151 EETM-G---KVEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRI-ELK----------------P---TSIEKEV 198 (256)
Q Consensus 151 ~~~~-~---~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~~~~l-~~~----------------~---~~~~~~~ 198 (256)
+++. + +|.+|.|||... ...++|+|+|+|+++.+... ... . ..+..+.
T Consensus 157 ~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (274)
T cd02509 157 GEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLRLLEEA 236 (274)
T ss_pred CCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHH
Confidence 8652 2 899999999742 12488999999997665422 110 0 0011122
Q ss_pred HHH----------HHhcCcEEEEEeCceEEecCCHHH
Q 046608 199 FPE----------IAVENKLFAMVLPGFWMDIGQPKD 225 (256)
Q Consensus 199 ~~~----------l~~~~~v~~~~~~~~~~di~t~~d 225 (256)
++. |.+...+.+++.+..|.|+|||+.
T Consensus 237 ~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 237 FAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 222 334457888999889999999975
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=201.54 Aligned_cols=216 Identities=24% Similarity=0.299 Sum_probs=160.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~-~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|.+||||||.|+||+ ||+|++++|+|||+|+++.+.++ ++++|+|++++ +.+.+++..+ ++.+++..
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~~----~~~~~~~~ 69 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVESF----GGKVVMTS 69 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHHc----CCEEEEcC
Confidence 568999999999995 59999999999999999999999 89999999864 5666666543 57777666
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ec-ccchHHHHHHHHhc-CCceEEEEEecCCCc---Ccee--EEEc
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-IS-EYPLKQMIEFHRGH-GGEASIMVTKVDEPS---KYGV--VVME 151 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~---~~~~--v~~~ 151 (256)
+....|++ ++..++..+... .+.|+++.||+ ++ ...+..+++.+... +.++++++.+..++. .++. +..+
T Consensus 70 ~~~~~gt~-~~~~~~~~~~~~-~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 147 (239)
T cd02517 70 PDHPSGTD-RIAEVAEKLDAD-DDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLD 147 (239)
T ss_pred cccCchhH-HHHHHHHhcCCC-CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEEC
Confidence 55566776 466677777531 12799999998 34 45689999887665 677887777765544 3443 5667
Q ss_pred CCCCeEeEEeecCCC-------CCCCeEEEEEEEeCHhhHHhcccC-CCCcc-hhhHH--HHHhcC-cEEEEEeCceEEe
Q 046608 152 ETMGKVEKFVEKPKN-------FVGNKINAGIYLLNPSVLDRIELK-PTSIE-KEVFP--EIAVEN-KLFAMVLPGFWMD 219 (256)
Q Consensus 152 ~~~~~v~~~~ek~~~-------~~~~~~~~Giy~~~~~~~~~l~~~-~~~~~-~~~~~--~l~~~~-~v~~~~~~~~~~d 219 (256)
++ +.|..+.+++.. ..+.++++|+|+|+++.+..+... ...+. .+.++ .+++.+ ++.++..++.|+|
T Consensus 148 ~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~ 226 (239)
T cd02517 148 KD-GYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIG 226 (239)
T ss_pred CC-CCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCC
Confidence 66 889888865432 135699999999999999987542 11111 23333 345566 6999999889999
Q ss_pred cCCHHHHHHHHH
Q 046608 220 IGQPKDYITGLR 231 (256)
Q Consensus 220 i~t~~d~~~a~~ 231 (256)
||||+||.+|++
T Consensus 227 i~t~~dl~~a~~ 238 (239)
T cd02517 227 VDTPEDLERVEA 238 (239)
T ss_pred CCCHHHHHHHHh
Confidence 999999999974
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=200.26 Aligned_cols=216 Identities=21% Similarity=0.268 Sum_probs=157.6
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.+||||||.|+||+ +|+|++++|+|||+|+++.+.++++++|+|++++ +.+.+++..+ ++++++..+.
T Consensus 4 ~~iIlA~g~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~~----~~~v~~~~~~ 71 (245)
T PRK05450 4 LIIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEAF----GGEVVMTSPD 71 (245)
T ss_pred EEEEecCCCCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHHc----CCEEEECCCc
Confidence 48999999999994 5999999999999999999999999999998853 5566666543 5677666555
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ec-ccchHHHHHHHHhcCCceEEEEEec------CCCcCceeEEEcCC
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV-IS-EYPLKQMIEFHRGHGGEASIMVTKV------DEPSKYGVVVMEET 153 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~v~~~~~ 153 (256)
...|++. +..+...+...+.+.++++.||+ ++ ...+.++++.+..++++.++++.+. .++..++++ +|++
T Consensus 72 ~~~gt~~-~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d~~ 149 (245)
T PRK05450 72 HPSGTDR-IAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LDAD 149 (245)
T ss_pred CCCchHH-HHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eCCC
Confidence 5556554 44444444211122799999999 44 3558899998877766777666655 345556655 7877
Q ss_pred CCeEeEEeecCCCC----------CCCeEEEEEEEeCHhhHHhcccCCC-Cc--c--hhhHHHHHhcC-cEEEEEeCc-e
Q 046608 154 MGKVEKFVEKPKNF----------VGNKINAGIYLLNPSVLDRIELKPT-SI--E--KEVFPEIAVEN-KLFAMVLPG-F 216 (256)
Q Consensus 154 ~~~v~~~~ek~~~~----------~~~~~~~Giy~~~~~~~~~l~~~~~-~~--~--~~~~~~l~~~~-~v~~~~~~~-~ 216 (256)
|+|+++.|||... .++++++|+|+|+++++..+..... .+ . .++++ ++..+ ++.++.++| +
T Consensus 150 -g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~g~~v~~~~~~~~~ 227 (245)
T PRK05450 150 -GRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLR-ALENGYRIHVVVVEEAP 227 (245)
T ss_pred -CcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHH-HHHCCCceEEEEeCCCC
Confidence 8999999998422 2479999999999999887753211 11 1 12233 44444 899999997 8
Q ss_pred EEecCCHHHHHHHHHHH
Q 046608 217 WMDIGQPKDYITGLRLY 233 (256)
Q Consensus 217 ~~di~t~~d~~~a~~~~ 233 (256)
|+|||||+||..|++.+
T Consensus 228 w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 228 SIGVDTPEDLERVRALL 244 (245)
T ss_pred CCCcCCHHHHHHHHHHh
Confidence 99999999999998764
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=217.15 Aligned_cols=216 Identities=26% Similarity=0.388 Sum_probs=170.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|++||||||.|+||++ ..||+|+|++|+|||+|+++.+.+++++++++++++..+.+.+++... ++.+ ..+
T Consensus 6 ~~aiIlAaG~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~----~~~~--i~~ 76 (456)
T PRK09451 6 MSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE----PLNW--VLQ 76 (456)
T ss_pred ceEEEEcCCCCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC----CcEE--EEC
Confidence 6799999999999985 789999999999999999999999999999999998888888777542 3333 345
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|+++++..+++.+..++ +|++++||+ +.+.++.++++.+.... .++++.+.+++..|+++.. ++ ++|.
T Consensus 77 ~~~~Gt~~al~~a~~~l~~~~--~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~yG~v~~-~~-g~V~ 150 (456)
T PRK09451 77 AEQLGTGHAMQQAAPFFADDE--DILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLDNPTGYGRITR-EN-GKVV 150 (456)
T ss_pred CCCCCcHHHHHHHHHhhccCC--cEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcCCCCCceEEEe-cC-CeEE
Confidence 667899999999999886422 799999999 44566888888765443 4566667778888998754 45 8999
Q ss_pred EEeecCCCCC----CCeEEEEEEEeCHhhHHh-cc---c---CCCCcchhhHHHHHhcC-cEEEEE------eCce--EE
Q 046608 159 KFVEKPKNFV----GNKINAGIYLLNPSVLDR-IE---L---KPTSIEKEVFPEIAVEN-KLFAMV------LPGF--WM 218 (256)
Q Consensus 159 ~~~ek~~~~~----~~~~~~Giy~~~~~~~~~-l~---~---~~~~~~~~~~~~l~~~~-~v~~~~------~~~~--~~ 218 (256)
++.|||.... ++++++|+|+|+++.|.. +. . ....+..++++.+++.+ ++.++. +.|+ |.
T Consensus 151 ~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~ 230 (456)
T PRK09451 151 GIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRL 230 (456)
T ss_pred EEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHH
Confidence 9999986322 358999999999887753 32 1 12233479999999887 788885 3564 78
Q ss_pred ecCCHHHHHHHHH
Q 046608 219 DIGQPKDYITGLR 231 (256)
Q Consensus 219 di~t~~d~~~a~~ 231 (256)
|++++++|++++.
T Consensus 231 di~~~~~y~~~~~ 243 (456)
T PRK09451 231 QLARLERVYQAEQ 243 (456)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999874
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=213.19 Aligned_cols=225 Identities=24% Similarity=0.400 Sum_probs=177.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
++|||||||.|+||++ .+||+|+|++|+|||+|+|+++.+++++++++++++..+.+.+++.. ++.+ ..+
T Consensus 3 ~~avIlAaG~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-----~~~~--~~~ 72 (458)
T PRK14354 3 RYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-----RSEF--ALQ 72 (458)
T ss_pred ceEEEEeCCCCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-----CcEE--EEc
Confidence 5799999999999985 78999999999999999999999999999999999988888877654 2333 335
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-e-cccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-I-SEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|++++++.++++++..+ ++++++.||. + .+.++.++++.+.+.+++.++++...+++..|+.+..+++ ++|.
T Consensus 73 ~~~~g~~~al~~a~~~l~~~~-d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~-~~V~ 150 (458)
T PRK14354 73 EEQLGTGHAVMQAEEFLADKE-GTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNEN-GEVE 150 (458)
T ss_pred CCCCCHHHHHHHHHHHhcccC-CeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCC-CCEE
Confidence 567899999999999986421 2799999998 3 3556899999888777788888777777778888888877 8999
Q ss_pred EEeecCCC----CCCCeEEEEEEEeCHhhH-Hhccc------CCCCcchhhHHHHHhcC-cEEEEEeCc--eEEecCCHH
Q 046608 159 KFVEKPKN----FVGNKINAGIYLLNPSVL-DRIEL------KPTSIEKEVFPEIAVEN-KLFAMVLPG--FWMDIGQPK 224 (256)
Q Consensus 159 ~~~ek~~~----~~~~~~~~Giy~~~~~~~-~~l~~------~~~~~~~~~~~~l~~~~-~v~~~~~~~--~~~di~t~~ 224 (256)
.+.|||.. ....++++|+|+|+++.+ +.+.+ .......++++.+++.+ ++.++.++| .|++++|++
T Consensus 151 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~ 230 (458)
T PRK14354 151 KIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRV 230 (458)
T ss_pred EEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHH
Confidence 99998742 124588999999998754 44421 11122367888888776 799999886 477888999
Q ss_pred HHHHHHHHHHhhh
Q 046608 225 DYITGLRLYLDFL 237 (256)
Q Consensus 225 d~~~a~~~~~~~~ 237 (256)
||..|+..+..++
T Consensus 231 Dl~~a~~ll~~~~ 243 (458)
T PRK14354 231 ALAEAEKVMRRRI 243 (458)
T ss_pred HHHHHHHHHHHHH
Confidence 9999987665443
|
|
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-28 Score=211.55 Aligned_cols=226 Identities=21% Similarity=0.284 Sum_probs=161.6
Q ss_pred CeEEEEeCCCCCccccCCCC-CCCccceeCC-cchHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHHhhhhccCcE-EE
Q 046608 1 MKALILVGGFGTRLRPLTLS-VPKPLVDFAN-KPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIK-IT 76 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~-~pK~ll~i~g-~pli~~~l~~l~~~~i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~-v~ 76 (256)
|.+||||||.|+||+|+|.. .||+|+++.| +|||+|+++++..+++++++|+++... ..+.+.+..+ +++ ..
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~~----~~~~~~ 76 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLREI----GKLASN 76 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHHc----CCCcce
Confidence 78999999999999999985 8999999965 899999999999999999999997654 3445555543 332 22
Q ss_pred eeccCCcCCCcHHHHHHHhhhcC--CCCCcEEEEeCCeecc--cchHHHHHHH---HhcCCceEEEEEecCCCcCceeEE
Q 046608 77 CSQETEPLGTAGPLALARDKLID--DSGEPFFVLNSDVISE--YPLKQMIEFH---RGHGGEASIMVTKVDEPSKYGVVV 149 (256)
Q Consensus 77 ~~~~~~~~g~~~s~~~~~~~i~~--~~~~~~lv~~~D~~~~--~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~ 149 (256)
+..+....||+.++..+...+.. ..++.++|++||+++. ..+.++++.+ .+.+..+++...+......||++.
T Consensus 77 ~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~ 156 (468)
T TIGR01479 77 IILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIR 156 (468)
T ss_pred EEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEE
Confidence 45667788999998887776622 1112589999998654 3477777654 334445556665555568899999
Q ss_pred EcC-----CCCeEeEEeecCCCCC--------CCeEEEEEEEeCHhhHH------------hccc---------CCCCcc
Q 046608 150 MEE-----TMGKVEKFVEKPKNFV--------GNKINAGIYLLNPSVLD------------RIEL---------KPTSIE 195 (256)
Q Consensus 150 ~~~-----~~~~v~~~~ek~~~~~--------~~~~~~Giy~~~~~~~~------------~l~~---------~~~~~~ 195 (256)
.++ +.++|.+|.|||.... +.++|+|+|+|+.+.+. .+.. ....+.
T Consensus 157 ~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 236 (468)
T TIGR01479 157 RGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPDLDFIRLD 236 (468)
T ss_pred eCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCCcccceeC
Confidence 873 1258999999997421 35899999999954433 3321 001111
Q ss_pred hhhHH---------HHH-hcCcEEEEEeCceEEecCCHHHHHHHH
Q 046608 196 KEVFP---------EIA-VENKLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 196 ~~~~~---------~l~-~~~~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
.++++ .++ +..++.+++.+..|.|+|+|++|.+..
T Consensus 237 ~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 237 KEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 33444 233 334788999988999999999999874
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=209.59 Aligned_cols=216 Identities=28% Similarity=0.404 Sum_probs=170.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.|+||++ .+||+|+|++|+|||+|+|+.+.+++ +++++++++..+.+.+++.. ++.+ ..+
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-----~~~~--~~~ 69 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-----WVKI--FLQ 69 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-----ccEE--Eec
Confidence 8999999999999986 78999999999999999999999974 89999999888777777653 3333 345
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|++++++.+++++..++ +|++++||+ +.+.+++++++.|.++++++++++++.+++..|+.+..+ + ++|
T Consensus 70 ~~~~g~~~ai~~a~~~l~~~~--~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~-g~v- 144 (448)
T PRK14357 70 EEQLGTAHAVMCARDFIEPGD--DLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-G-GKY- 144 (448)
T ss_pred CCCCChHHHHHHHHHhcCcCC--eEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-C-CeE-
Confidence 667899999999999986422 899999998 445668999999988888999999888888899998877 5 788
Q ss_pred EEeecCCCCC----CCeEEEEEEEeCHhhHHh-ccc---C---CCCcchhhHHHHHhcCcEEEEEeCce--EEecCCHHH
Q 046608 159 KFVEKPKNFV----GNKINAGIYLLNPSVLDR-IEL---K---PTSIEKEVFPEIAVENKLFAMVLPGF--WMDIGQPKD 225 (256)
Q Consensus 159 ~~~ek~~~~~----~~~~~~Giy~~~~~~~~~-l~~---~---~~~~~~~~~~~l~~~~~v~~~~~~~~--~~di~t~~d 225 (256)
++.||+.... .+++++|+|+|++++|.. +.+ . ......++++.+. ++.++...++ |.+++||++
T Consensus 145 ~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~~---~v~~~~~~~~~~~~~i~~~~~ 221 (448)
T PRK14357 145 RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFAE---KVRVVKTEDLLEITGVNTRIQ 221 (448)
T ss_pred EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhhh---heeEEecCCHHHEEccCCHHH
Confidence 7777664321 358999999999998654 321 1 1122246776662 4777777786 788889999
Q ss_pred HHHHHHHHHh
Q 046608 226 YITGLRLYLD 235 (256)
Q Consensus 226 ~~~a~~~~~~ 235 (256)
|..+...+..
T Consensus 222 l~~~~~~~~~ 231 (448)
T PRK14357 222 LAWLEKQLRM 231 (448)
T ss_pred HHHHHHHHHH
Confidence 9998876643
|
|
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-27 Score=206.62 Aligned_cols=222 Identities=21% Similarity=0.326 Sum_probs=174.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||++ ..||+|+|++|+|||+|+|+.+.+++++++++++++..+.+.+++.+.. ++.++ .+
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~---~i~~v--~~ 73 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP---GLEFV--EQ 73 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC---CeEEE--Ee
Confidence 5789999999999986 7899999999999999999999999999999999988888888876431 34443 45
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|+++++..+++++...+ +++++++||. +.+.++.++++.+.+++++.+++..+.+++..|+.+..+++ ++|.
T Consensus 74 ~~~~G~~~sv~~~~~~l~~~~-~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~-g~v~ 151 (450)
T PRK14360 74 QPQLGTGHAVQQLLPVLKGFE-GDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGN-NLVE 151 (450)
T ss_pred CCcCCcHHHHHHHHHHhhccC-CcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCC-CCEE
Confidence 567899999999999886421 1699999999 34566899999988888888877777778888999988887 8999
Q ss_pred EEeecCC----CCCCCeEEEEEEEeCHhhHHhcccC-------CCCcchhhHHHHHhcCcEEEEEeCc--eEEecCCHHH
Q 046608 159 KFVEKPK----NFVGNKINAGIYLLNPSVLDRIELK-------PTSIEKEVFPEIAVENKLFAMVLPG--FWMDIGQPKD 225 (256)
Q Consensus 159 ~~~ek~~----~~~~~~~~~Giy~~~~~~~~~l~~~-------~~~~~~~~~~~l~~~~~v~~~~~~~--~~~di~t~~d 225 (256)
++.|||. ...++++++|+|+|+++.|..+.+. ...+..++++.+.. +..+.+.+ .|..+++|+|
T Consensus 152 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~~---~~~~~v~~~~~~~~i~~~~d 228 (450)
T PRK14360 152 QIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDP---VMAVEVEDYQEINGINDRKQ 228 (450)
T ss_pred EEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHhh---ceEEecCCHHHhhcCCCHHH
Confidence 9999975 2346799999999999877654211 11223466666643 34555665 4678999999
Q ss_pred HHHHHHHHHh
Q 046608 226 YITGLRLYLD 235 (256)
Q Consensus 226 ~~~a~~~~~~ 235 (256)
+..++..+..
T Consensus 229 l~~~~~~l~~ 238 (450)
T PRK14360 229 LAQCEEILQN 238 (450)
T ss_pred HHHHHHHHHH
Confidence 9999887654
|
|
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-27 Score=189.20 Aligned_cols=211 Identities=22% Similarity=0.268 Sum_probs=153.2
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~-~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.+||||+|.|+||+ +|+|++++|+|||+|+++.+.++ ++++|+|++++ +.+.+++..+ ++++.+..+
T Consensus 4 ~aiIlA~g~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~~----~~~v~~~~~ 71 (238)
T PRK13368 4 VVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEAF----GGKVVMTSD 71 (238)
T ss_pred EEEEecCCCCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHHc----CCeEEecCc
Confidence 48999999999994 39999999999999999999999 79999999853 5677776643 666766655
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee--cccchHHHHHHHHhcCC-ceEEEEEecCC------CcCceeEEEc
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGHGG-EASIMVTKVDE------PSKYGVVVME 151 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~--~~~~~~~~~~~~~~~~~-~~~i~~~~~~~------~~~~~~v~~~ 151 (256)
....|++ .+..++..++.+ .|+++.||+. .+.++.++++.+...+. ++++++.+.+. +..++. ..+
T Consensus 72 ~~~~g~~-~~~~a~~~~~~d---~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~ 146 (238)
T PRK13368 72 DHLSGTD-RLAEVMLKIEAD---IYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV-VVD 146 (238)
T ss_pred cCCCccH-HHHHHHHhCCCC---EEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-EEC
Confidence 5555665 577777776433 7999999983 35668999988765543 44444444332 444443 445
Q ss_pred CCCCeEeEEeecCCC------CCCCeEEEEEEEeCHhhHHhcccC-CCC---cch-hhHHHHHhcC-cEEEEEeCceEEe
Q 046608 152 ETMGKVEKFVEKPKN------FVGNKINAGIYLLNPSVLDRIELK-PTS---IEK-EVFPEIAVEN-KLFAMVLPGFWMD 219 (256)
Q Consensus 152 ~~~~~v~~~~ek~~~------~~~~~~~~Giy~~~~~~~~~l~~~-~~~---~~~-~~~~~l~~~~-~v~~~~~~~~~~d 219 (256)
++ |+++.+.++|.. ..+.+.++|+|+|++++|..+... ... ++. +++ .++..+ ++.++..++.|+|
T Consensus 147 ~~-g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~D 224 (238)
T PRK13368 147 KN-GDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIG 224 (238)
T ss_pred CC-CCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCC
Confidence 56 889888865421 113488999999999999987531 111 222 455 444344 6999998889999
Q ss_pred cCCHHHHHHHHH
Q 046608 220 IGQPKDYITGLR 231 (256)
Q Consensus 220 i~t~~d~~~a~~ 231 (256)
||||+||..|+.
T Consensus 225 I~t~~Dl~~a~~ 236 (238)
T PRK13368 225 VDTPEDLERVRA 236 (238)
T ss_pred CCCHHHHHHHHH
Confidence 999999999975
|
|
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=182.41 Aligned_cols=179 Identities=27% Similarity=0.487 Sum_probs=141.9
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHHhhh--hccCcEEEe
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFE--KKLEIKITC 77 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~-~~i~~~~~~~~--~~~~~~v~~ 77 (256)
|+|||||||.|+||+|++...||+|+|++|+|||+|+++.+.++|+++|+|++++.. +.+.+++..+. ...+..+.+
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 80 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT 80 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence 799999999999999999999999999999999999999999999999999998754 56777776531 111234455
Q ss_pred eccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCC-------------CcC
Q 046608 78 SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDE-------------PSK 144 (256)
Q Consensus 78 ~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~ 144 (256)
..+....|+++++..+.+.+.. .|++++||.+++.++..+++.|.++++.++++..+... ...
T Consensus 81 ~~~~~~~gt~~al~~~~~~i~~----d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 156 (214)
T cd04198 81 IVLDEDMGTADSLRHIRKKIKK----DFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADE 156 (214)
T ss_pred ecCCCCcChHHHHHHHHhhcCC----CEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCC
Confidence 5567789999999999998843 59999999999999999999999988888888776431 134
Q ss_pred ceeEEEcCCCCeEeEEeecCC------------------CCCCCeEEEEEEEeCHhh
Q 046608 145 YGVVVMEETMGKVEKFVEKPK------------------NFVGNKINAGIYLLNPSV 183 (256)
Q Consensus 145 ~~~v~~~~~~~~v~~~~ek~~------------------~~~~~~~~~Giy~~~~~~ 183 (256)
+.++..|+.++++..+..... .-..++.++++|++++++
T Consensus 157 ~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v 213 (214)
T cd04198 157 RDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWV 213 (214)
T ss_pred CceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeee
Confidence 677888887678877664211 012457788888887654
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=182.67 Aligned_cols=179 Identities=25% Similarity=0.412 Sum_probs=142.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh-----ccCcEE
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK-----KLEIKI 75 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~-----~~~~~v 75 (256)
|+|||+|||.|+||.|+|...||+|+|++|+|||+|+++.+.++|+++++|++++..+.+.+++.+... ..++.+
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV 80 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence 799999999999999999999999999999999999999999999999999999998888888875321 123455
Q ss_pred EeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHH--HHhcCCceEEEEEecC--C-------CcC
Q 046608 76 TCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEF--HRGHGGEASIMVTKVD--E-------PSK 144 (256)
Q Consensus 76 ~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~--~-------~~~ 144 (256)
....+.+..|++.++..+.+.+.. +|++++||++++.++..++++ +...+.++++...... . ...
T Consensus 81 ~~~~~~~~~Gta~~l~~~~~~i~~----dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (216)
T cd02507 81 ITSDLCESAGDALRLRDIRGLIRS----DFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEE 156 (216)
T ss_pred EEccCCCCCccHHHHHHHhhcCCC----CEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCC
Confidence 666677899999999999998854 599999999999999999965 4444555665554432 2 345
Q ss_pred ceeEEEcCCC--CeEeEEeecCCC------------------CCCCeEEEEEEEeCHhh
Q 046608 145 YGVVVMEETM--GKVEKFVEKPKN------------------FVGNKINAGIYLLNPSV 183 (256)
Q Consensus 145 ~~~v~~~~~~--~~v~~~~ek~~~------------------~~~~~~~~Giy~~~~~~ 183 (256)
++++..|+++ .++..+.+++.. -..++.++|+|++++++
T Consensus 157 ~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~V 215 (216)
T cd02507 157 EDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDV 215 (216)
T ss_pred CcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcC
Confidence 7888989875 356666666542 12468889999998765
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=173.65 Aligned_cols=229 Identities=23% Similarity=0.296 Sum_probs=162.5
Q ss_pred CeEEEEeCCCCCccccCCC-CCCCcccee-CCcchHHHHHHHHHH-cCCCEEEEEccCChH-HHHHHHHhhhhccCcEEE
Q 046608 1 MKALILVGGFGTRLRPLTL-SVPKPLVDF-ANKPMILHQIEALKA-VGVTEVVLAINYQPE-VMLNFLKEFEKKLEIKIT 76 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~-~~pK~ll~i-~g~pli~~~l~~l~~-~~i~~i~vv~~~~~~-~i~~~~~~~~~~~~~~v~ 76 (256)
|.++|||||.||||||++. ..||+++++ ++++|++.+++++.. .+.+++++||+.... .+.+.+.......-..
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~-- 79 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAG-- 79 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccc--
Confidence 6799999999999999985 799999999 679999999999998 468999999987753 4556666532211111
Q ss_pred eeccCCcCCCcHHHHHHHhhhcCCCCC-cEEEEeCCeeccc--chHHHHHHH---HhcCCceEEEEEecCCCcCceeEEE
Q 046608 77 CSQETEPLGTAGPLALARDKLIDDSGE-PFFVLNSDVISEY--PLKQMIEFH---RGHGGEASIMVTKVDEPSKYGVVVM 150 (256)
Q Consensus 77 ~~~~~~~~g~~~s~~~~~~~i~~~~~~-~~lv~~~D~~~~~--~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~~ 150 (256)
+..++.+.+|+-++..+.-.+....++ -++|+++||+... .+.+.++.. .+.+.-+++...+..-...||||..
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~ 159 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIET 159 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeec
Confidence 345677889999998887777655433 5899999996543 265555432 3344555555555545588999998
Q ss_pred cC-----CCCeEeEEeecCCCC--------CCCeEEEEEEEeCHhhHH-hcccCC----------------CC-------
Q 046608 151 EE-----TMGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVLD-RIELKP----------------TS------- 193 (256)
Q Consensus 151 ~~-----~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~~~-~l~~~~----------------~~------- 193 (256)
.+ +..+|.+|.|||... ...++|+|+|+|+.+.+. .+.+.. .+
T Consensus 160 G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e 239 (333)
T COG0836 160 GESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNE 239 (333)
T ss_pred CcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccchhcccHH
Confidence 65 235799999999832 235999999999976543 332110 00
Q ss_pred ----cchhhH--HHHHhcCcEEEEEeCceEEecCCHHHHHHHHH
Q 046608 194 ----IEKEVF--PEIAVENKLFAMVLPGFWMDIGQPKDYITGLR 231 (256)
Q Consensus 194 ----~~~~~~--~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~ 231 (256)
....-+ -.|.+..++.+++.+-.|-|+|+|..+++...
T Consensus 240 ~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 240 AYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred HHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 000111 22455678999999889999999999987654
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-24 Score=158.27 Aligned_cols=215 Identities=22% Similarity=0.340 Sum_probs=153.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.|||+.|+|...||+|+++.|+|||++.|+.|+++|+++|+||+|+..++.. ++++ ++++++++++.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~Fe-YLkd---Ky~vtLvyN~k 76 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQFE-YLKD---KYDVTLVYNPK 76 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHHH-HHHH---hcCeEEEeCch
Confidence 8999999999999999999999999999999999999999999999999999999887654 3433 34899999999
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
+...++..|++.|++.+.+ .-|+.+|..+. +.+...+. ..+.-.+.........=.+..+.+ ++|+++
T Consensus 77 Y~~yNn~ySlyla~d~l~n-----tYiidsDnyl~---kNif~~~~---~~S~Yfav~~~~~tnEw~l~~~~~-~ki~~v 144 (231)
T COG4750 77 YREYNNIYSLYLARDFLNN-----TYIIDSDNYLT---KNIFLTKE---SHSKYFAVYRSGKTNEWLLIYNSD-GKITRV 144 (231)
T ss_pred HHhhhhHHHHHHHHHHhcc-----cEEeccchHhh---hhhhhcCc---ccceEEEEEecCCCceeEEEEcCC-CcEEEE
Confidence 9999999999999999987 56789999665 33333222 223333333333333445677777 899987
Q ss_pred eecCCCCCCCeEEEEEEEeCHhhHHhcc----cCCCCcc------hhhHHHHHhcCcEEEEEeCc-eEEecCCHHHHHHH
Q 046608 161 VEKPKNFVGNKINAGIYLLNPSVLDRIE----LKPTSIE------KEVFPEIAVENKLFAMVLPG-FWMDIGQPKDYITG 229 (256)
Q Consensus 161 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~----~~~~~~~------~~~~~~l~~~~~v~~~~~~~-~~~di~t~~d~~~a 229 (256)
.-. ..+.++.+|+..|+..+-+.+. .-..+.+ .++.-.-++.-.+++-..++ .-+++++.+||...
T Consensus 145 ~Ig---g~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~ 221 (231)
T COG4750 145 DIG---GLNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKF 221 (231)
T ss_pred Eec---CcccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhh
Confidence 532 2345889999999976544331 1111111 12222222233444444444 57899999999887
Q ss_pred HHHHH
Q 046608 230 LRLYL 234 (256)
Q Consensus 230 ~~~~~ 234 (256)
...++
T Consensus 222 ~~~~l 226 (231)
T COG4750 222 EQKFL 226 (231)
T ss_pred hhhhc
Confidence 66543
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=168.46 Aligned_cols=216 Identities=16% Similarity=0.126 Sum_probs=150.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCC-CEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i-~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.+||||+|.|+||++ |+|++++|+|||+|+++.+..++. +.|+| +.+.+.+.+++..+ +++++...+
T Consensus 49 ~aIIpA~G~SsR~~~------K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV--~~~~e~I~~~~~~~----~v~vi~~~~ 116 (293)
T PLN02917 49 VGIIPARFASSRFEG------KPLVHILGKPMIQRTWERAKLATTLDHIVV--ATDDERIAECCRGF----GADVIMTSE 116 (293)
T ss_pred EEEEecCCCCCCCCC------CCeeeECCEEHHHHHHHHHHcCCCCCEEEE--ECChHHHHHHHHHc----CCEEEeCCc
Confidence 589999999999954 999999999999999999998864 44333 35667777777543 566666555
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEE----ecCCCcCceeEE--EcC
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVT----KVDEPSKYGVVV--MEE 152 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~v~--~~~ 152 (256)
....|++.. ..+++.++.+ .+.++++.||..+ ...++++++.+.++ .+.++.+. ..+++..|+.++ .|+
T Consensus 117 ~~~~GT~~~-~~a~~~l~~~-~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv~~~ 193 (293)
T PLN02917 117 SCRNGTERC-NEALKKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCVVDN 193 (293)
T ss_pred ccCCchHHH-HHHHHhccCC-CCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEEECC
Confidence 656676554 6788888632 2279999999943 34589999877654 34444333 445678888875 676
Q ss_pred CCCeEeEEeec------CC---CCCCCeEEEEEEEeCHhhHHhccc---C---CCCcchhhHHHHHhcC-cEEEEEeCce
Q 046608 153 TMGKVEKFVEK------PK---NFVGNKINAGIYLLNPSVLDRIEL---K---PTSIEKEVFPEIAVEN-KLFAMVLPGF 216 (256)
Q Consensus 153 ~~~~v~~~~ek------~~---~~~~~~~~~Giy~~~~~~~~~l~~---~---~~~~~~~~~~~l~~~~-~v~~~~~~~~ 216 (256)
+ |++..|++. .. ...-.+.++|+|+|+.+.|..+.+ + ...+.+++. +.++| ++.++..+..
T Consensus 194 ~-g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~--~le~G~~i~~~~~~~~ 270 (293)
T PLN02917 194 Q-GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLK--VLENGYKMKVIKVDHE 270 (293)
T ss_pred C-CeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHH--HHhCCCceEEEEeCCC
Confidence 6 776644422 11 111248899999999998886532 1 122334555 44555 7888887666
Q ss_pred EEecCCHHHHHHHHHHHHh
Q 046608 217 WMDIGQPKDYITGLRLYLD 235 (256)
Q Consensus 217 ~~di~t~~d~~~a~~~~~~ 235 (256)
...|||++||..|++.+.+
T Consensus 271 ~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 271 AHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 7799999999999987643
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=181.74 Aligned_cols=227 Identities=21% Similarity=0.277 Sum_probs=154.9
Q ss_pred CeEEEEeCCCCCccccCCCC-CCCcccee-CCcchHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHHhhhhccCcEEEe
Q 046608 1 MKALILVGGFGTRLRPLTLS-VPKPLVDF-ANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITC 77 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~-~pK~ll~i-~g~pli~~~l~~l~~~~i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~ 77 (256)
|.+||||||.|+||+|+|.. .||+|+++ +++|||+++++++...++.+.++|++... ..+.+++..... ....+
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~---~~~~i 82 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK---LTENI 82 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC---ccccE
Confidence 68999999999999999986 79999999 45799999999999888877778887653 445556654320 11123
Q ss_pred eccCCcCCCcHHHHHHHhhhcCCC---CCcEEEEeCCeeccc-c-hHHHHHHHH---hcCCceEEEEEecCCCcCceeEE
Q 046608 78 SQETEPLGTAGPLALARDKLIDDS---GEPFFVLNSDVISEY-P-LKQMIEFHR---GHGGEASIMVTKVDEPSKYGVVV 149 (256)
Q Consensus 78 ~~~~~~~g~~~s~~~~~~~i~~~~---~~~~lv~~~D~~~~~-~-~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~v~ 149 (256)
..++.+.+|+.++..|...+.... ++.++|+++|++... . |.+.++... +.+.-+++...+..-.+.||||.
T Consensus 83 i~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~ 162 (478)
T PRK15460 83 ILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIR 162 (478)
T ss_pred EecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEE
Confidence 456778899998887777664331 126889999996543 2 554443322 23444555555544457899999
Q ss_pred EcCCC--------CeEeEEeecCCCC-------CC-CeEEEEEEEeCHhhHH-hcccC----------------CC-C--
Q 046608 150 MEETM--------GKVEKFVEKPKNF-------VG-NKINAGIYLLNPSVLD-RIELK----------------PT-S-- 193 (256)
Q Consensus 150 ~~~~~--------~~v~~~~ek~~~~-------~~-~~~~~Giy~~~~~~~~-~l~~~----------------~~-~-- 193 (256)
.++.. ..|.+|.|||... .+ .++|+|+|+|+.+.+. .+.+. .. .
T Consensus 163 ~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~ 242 (478)
T PRK15460 163 RGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDLDFI 242 (478)
T ss_pred eCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhccCcccce
Confidence 87531 2699999999842 23 4899999999976644 22210 00 0
Q ss_pred -cchhhH--------HH--HHhcCcEEEEEeCceEEecCCHHHHHHHH
Q 046608 194 -IEKEVF--------PE--IAVENKLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 194 -~~~~~~--------~~--l~~~~~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
+..+.+ .+ |.+...+.+++.+..|.|+|+|..+.+..
T Consensus 243 ~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 243 RVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred eeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 001111 12 33445788899988999999999998764
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-22 Score=162.77 Aligned_cols=227 Identities=22% Similarity=0.395 Sum_probs=163.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCC-hHHHHHHHHhhhh-cc-CcEEEe
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEK-KL-EIKITC 77 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~-~~~i~~~~~~~~~-~~-~~~v~~ 77 (256)
|++||+|||.|+||..++...||+|+|++|+|||+|.|++|.++|+++++|++.++ ...++..+.+... +. ...+.+
T Consensus 10 fqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~~v~i 89 (433)
T KOG1462|consen 10 FQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKRPDYVEI 89 (433)
T ss_pred hhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccccccEEEe
Confidence 57999999999999999999999999999999999999999999999999999764 4566666654211 00 112222
Q ss_pred e-ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC-----------CCcCc
Q 046608 78 S-QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD-----------EPSKY 145 (256)
Q Consensus 78 ~-~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~~ 145 (256)
. ......|+++++..-...+..+ .|+|+.||.+++.++..+++.++..++...++..... .....
T Consensus 90 p~~~~~d~gtadsLr~Iy~kikS~---DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~ 166 (433)
T KOG1462|consen 90 PTDDNSDFGTADSLRYIYSKIKSE---DFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQAR 166 (433)
T ss_pred ecccccccCCHHHHhhhhhhhccC---CEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCccccccccc
Confidence 1 1223679999999999999885 4999999999999999999998877766555544321 11233
Q ss_pred eeEEEcCCCCeEeEEeec-----------------CC-CCCCCeEEEEEEEeCHhhHHhccc--CCCCcchhhHHHHHhc
Q 046608 146 GVVVMEETMGKVEKFVEK-----------------PK-NFVGNKINAGIYLLNPSVLDRIEL--KPTSIEKEVFPEIAVE 205 (256)
Q Consensus 146 ~~v~~~~~~~~v~~~~ek-----------------~~-~~~~~~~~~Giy~~~~~~~~~l~~--~~~~~~~~~~~~l~~~ 205 (256)
.++-++++++++.-.... |+ .-.+.+.++.+|+|+..+++.+.+ ...+|..+++++++++
T Consensus 167 d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~P~lvkk 246 (433)
T KOG1462|consen 167 DVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFLPYLVKK 246 (433)
T ss_pred ceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecccccchhhhh
Confidence 455556655554322211 11 112458899999999999999874 3456666666665542
Q ss_pred ---------------------------------CcEEEEEe--CceEEecCCHHHHHHHH
Q 046608 206 ---------------------------------NKLFAMVL--PGFWMDIGQPKDYITGL 230 (256)
Q Consensus 206 ---------------------------------~~v~~~~~--~~~~~di~t~~d~~~a~ 230 (256)
-+++++.. ..-+..++|...|+++|
T Consensus 247 Q~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN 306 (433)
T KOG1462|consen 247 QFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEIN 306 (433)
T ss_pred hhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhh
Confidence 23444443 33688999999999999
|
|
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-20 Score=148.19 Aligned_cols=210 Identities=20% Similarity=0.249 Sum_probs=141.1
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
+||||||.|+||. +|+|++++|+|||.|+++.+..+++++|+|++. .+.+.+.+.++ +++++...+..
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~~----g~~~v~~~~~~ 69 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATD--DESVAQTCQKF----GIEVCMTSKHH 69 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHHc----CCEEEEeCCCC
Confidence 8999999999994 599999999999999999999888999999884 34566655543 56665443333
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-c-ccchHHHHHHHHhcCCceEEEEEecCCC-----cCceeEEEcCCCC
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVI-S-EYPLKQMIEFHRGHGGEASIMVTKVDEP-----SKYGVVVMEETMG 155 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~v~~~~~~~ 155 (256)
..| ...+..+...+...+.+.++++.||.. . +..++++++.+.....+++.++.+..+. ++...+..+.+ |
T Consensus 70 ~~G-t~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~-g 147 (238)
T TIGR00466 70 NSG-TERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQ-G 147 (238)
T ss_pred CCh-hHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCC-C
Confidence 334 445555555442111227999999994 3 3458899988765556777777776442 22334444665 7
Q ss_pred eEeEEeecCC----C-------CCC--CeEEEEEEEeCHhhHHhcccC-CCCcc----hhhHHHHHhcCcEEEEEeCce-
Q 046608 156 KVEKFVEKPK----N-------FVG--NKINAGIYLLNPSVLDRIELK-PTSIE----KEVFPEIAVENKLFAMVLPGF- 216 (256)
Q Consensus 156 ~v~~~~ek~~----~-------~~~--~~~~~Giy~~~~~~~~~l~~~-~~~~~----~~~~~~l~~~~~v~~~~~~~~- 216 (256)
.+..+++.+- . +.. .+...|+|.|+.++|.....- ...++ -+.++.+....++.++..++.
T Consensus 148 ~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~~ 227 (238)
T TIGR00466 148 YALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVP 227 (238)
T ss_pred eEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCCC
Confidence 6655554311 1 111 356899999999999876432 12222 145666666558988887665
Q ss_pred EEecCCHHHH
Q 046608 217 WMDIGQPKDY 226 (256)
Q Consensus 217 ~~di~t~~d~ 226 (256)
-..||||+|+
T Consensus 228 ~~~vdt~~d~ 237 (238)
T TIGR00466 228 SVGVDTQEDL 237 (238)
T ss_pred CCCCCChHHc
Confidence 4599999997
|
|
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=157.89 Aligned_cols=205 Identities=14% Similarity=0.125 Sum_probs=144.7
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|.+||||||.|+||+. ..||++++++|+||++|+++.+.+++ +++|+|++++......+.+.. .... +.++
T Consensus 6 v~aIILAAG~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~---~~~~-v~~v- 77 (378)
T PRK09382 6 ISLVIVAAGRSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP---EIKF-VTLV- 77 (378)
T ss_pred ceEEEECCCCCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc---cCCe-EEEe-
Confidence 4699999999999954 67999999999999999999999987 799999997765444333221 1111 2222
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKV 157 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (256)
..+.+..+|++.+++.++.+ .+++++||..+ + +.++++++..... ++++.+.+..++..|+...++. ..+
T Consensus 78 -~gG~~r~~SV~~gL~~l~~d---~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~Dtik~~~~tldR--~~l 149 (378)
T PRK09382 78 -TGGATRQESVRNALEALDSE---YVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVADTLKRANETVDR--EGL 149 (378)
T ss_pred -CCCchHHHHHHHHHHhcCCC---eEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEeccCcEEeeeEcCc--ccE
Confidence 23445778999999998654 79999999843 3 4478888866543 5777888888877776544444 345
Q ss_pred eEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHHh
Q 046608 158 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLYLD 235 (256)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~~~ 235 (256)
..+ ++|+. |+.+.+.........+ .|..+.+...| ++.+++.++.|++|+||+||..|+..+..
T Consensus 150 ~~~-QTPQ~------------f~~~~l~~a~~~~~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 150 KLI-QTPQL------------SRTKTLKAAADGRGDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred EEE-ECCCC------------CCHHHHHHHHhCCCCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 444 66652 2333333222222333 56667777666 78888888899999999999999887654
|
|
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=145.69 Aligned_cols=206 Identities=17% Similarity=0.169 Sum_probs=139.8
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
+.+||||||.|+||.+ |+|++++|+|||+|+++.+.+++ +++|+|++ +.+.+.+.+..+ ++.+.+..
T Consensus 2 ~~~iIlA~G~s~R~~~------K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~~----~~~~~~~~ 69 (223)
T cd02513 2 ILAIIPARGGSKGIPG------KNIRPLGGKPLIAWTIEAALESKLFDRVVVST--DDEEIAEVARKY----GAEVPFLR 69 (223)
T ss_pred eEEEEecCCCCCCCCC------cccchhCCccHHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHHh----CCCceeeC
Confidence 3589999999999943 99999999999999999999987 78888876 345555555443 33222221
Q ss_pred c----CCcCCCcHHHHHHHhhhcCC--CCCcEEEEeCCee--cccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEc
Q 046608 80 E----TEPLGTAGPLALARDKLIDD--SGEPFFVLNSDVI--SEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVME 151 (256)
Q Consensus 80 ~----~~~~g~~~s~~~~~~~i~~~--~~~~~lv~~~D~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~ 151 (256)
. ....|+.+++..+++.++.. ..+.++++.||+. ....++++++.+...+.++++.+.+..+...++....+
T Consensus 70 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (223)
T cd02513 70 PAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDD 149 (223)
T ss_pred ChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheeecc
Confidence 1 23457788999999887541 1127999999993 34568999998887777877777776555544443322
Q ss_pred CCCCeEeEEeec--C---CCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCc-eEEecCCHHH
Q 046608 152 ETMGKVEKFVEK--P---KNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPG-FWMDIGQPKD 225 (256)
Q Consensus 152 ~~~~~v~~~~ek--~---~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~-~~~di~t~~d 225 (256)
++ ..+..+.+. + ..+.....++|+|+++.+.+..... .+ .+++..+.++. .-+||+|++|
T Consensus 150 ~~-~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~---~~----------g~~~~~~~~~~~~~~dI~~~~D 215 (223)
T cd02513 150 NG-LEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNS---FF----------GGKTGPYEMPRERSIDIDTEED 215 (223)
T ss_pred CC-ceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhcCC---cc----------CCCeEEEEeCccceeCCCCHHH
Confidence 21 122222121 1 1122346788999999998765221 11 35777777766 5789999999
Q ss_pred HHHHHHH
Q 046608 226 YITGLRL 232 (256)
Q Consensus 226 ~~~a~~~ 232 (256)
|..|+..
T Consensus 216 ~~~ae~~ 222 (223)
T cd02513 216 FELAEAL 222 (223)
T ss_pred HHHHHHh
Confidence 9998653
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-20 Score=147.49 Aligned_cols=206 Identities=17% Similarity=0.180 Sum_probs=139.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEccCCh-HHHHHHHHhhhhccCcEEEeec
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~-~i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
.+||||||.|+||+. ..||+|++++|+|||+|+++.+..+ ++++++|++++.. +.+.+.+... ..+.+..
T Consensus 1 ~aiIlAaG~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-----~~~~~~~ 72 (217)
T TIGR00453 1 SAVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-----AVPKIVA 72 (217)
T ss_pred CEEEEcCcccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-----CcEEEeC
Confidence 489999999999975 5699999999999999999999998 6999999997653 3444433321 1122222
Q ss_pred cCCcCCCcHHHHHHHhhh-cCCCCCcEEEEeCCee-c-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 80 ETEPLGTAGPLALARDKL-IDDSGEPFFVLNSDVI-S-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i-~~~~~~~~lv~~~D~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
.+.+..+++..++..+ +.+ .++++.||+. . .+.+.++++.+.++ ++++++.+.. .+....+++ |.
T Consensus 73 --~~~~~~~sl~~~l~~~~~~d---~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~----~~v~~~~~~-g~ 140 (217)
T TIGR00453 73 --GGDTRQDSVRNGLKALKDAE---WVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVA----DTLKRVEAD-GF 140 (217)
T ss_pred --CCchHHHHHHHHHHhCCCCC---EEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEecc----ceEEEEcCC-Cc
Confidence 2234568999999888 333 7999999994 3 34488888877654 3444444433 234444555 66
Q ss_pred EeEEeecCCCCCCCeEEEEEEEeCHhhHHhccc----CCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL----KPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLR 231 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~----~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~ 231 (256)
+..+.+... -....+ .+.|+.+.+..+.. +... ..|....+...+ ++..++.+...++||||+||..|+.
T Consensus 141 ~~~~~~r~~---~~~~~~-p~~f~~~~l~~~~~~~~~~~~~-~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 141 IVETVDREG---LWAAQT-PQAFRTELLKKALARAKEEGFE-ITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred eeecCChHH---eEEEeC-CCcccHHHHHHHHHHHHhcCCC-CCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence 777765321 112333 68999888766532 2222 245556665556 7878877767789999999999875
Q ss_pred H
Q 046608 232 L 232 (256)
Q Consensus 232 ~ 232 (256)
.
T Consensus 216 ~ 216 (217)
T TIGR00453 216 L 216 (217)
T ss_pred h
Confidence 4
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=146.04 Aligned_cols=214 Identities=16% Similarity=0.163 Sum_probs=139.7
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (256)
+.+||||||.|+||+. ..||+|++++|+|||+|+++.+..++ +++|+|++++.. +.+.+.... . ...+.+.
T Consensus 4 ~~~iILAaG~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~-~~~~~~~ 76 (227)
T PRK00155 4 VYAIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---K-DPKVTVV 76 (227)
T ss_pred eEEEEEcCccccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---c-CCceEEe
Confidence 4689999999999964 56999999999999999999999875 899999997665 333332221 1 1112222
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
. .+.+.++++..+++.++..+ .++++.||+.+ ...++++++.+..++ .++.+.+..++ +. ..+++ |.
T Consensus 77 ~--~~~~~~~sv~~~l~~~~~~d--~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~~--~~--~v~~~-g~ 145 (227)
T PRK00155 77 A--GGAERQDSVLNGLQALPDDD--WVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPVKDT--IK--RSDDG-GG 145 (227)
T ss_pred C--CcchHHHHHHHHHHhCCCCC--EEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEecccc--EE--EEcCC-Cc
Confidence 2 23357899999999884322 79999999943 345889998776653 44444444332 22 22444 55
Q ss_pred EeEEeecCCCCCCCeEEEEEEEeCHhhHHhcccC---CCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELK---PTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRL 232 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~---~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~ 232 (256)
+.++.+.. .-...-+.++|+.+.+..+... ...+..+....+...+ ++..+..+..+++||||+||..|+..
T Consensus 146 ~~~~~~r~----~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~ 221 (227)
T PRK00155 146 IVDTPDRS----GLWAAQTPQGFRIELLREALARALAEGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAI 221 (227)
T ss_pred eeecCChH----HheeeeCCccchHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHH
Confidence 65553211 1122233789998887765321 1222244445555555 67777766678899999999999887
Q ss_pred HHhh
Q 046608 233 YLDF 236 (256)
Q Consensus 233 ~~~~ 236 (256)
+..+
T Consensus 222 ~~~~ 225 (227)
T PRK00155 222 LKRR 225 (227)
T ss_pred HHhc
Confidence 6543
|
|
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-19 Score=138.95 Aligned_cols=179 Identities=20% Similarity=0.313 Sum_probs=125.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|++||||||+|+||++ .||+|++++|+|||+|+++.+..++++++++++++..+.+..++... ...+ ..
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~----~~~~---~~ 69 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSA----YKDY---KN 69 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhc----CcEE---Ee
Confidence 8999999999999965 69999999999999999999999889999999998888887777652 1222 12
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
..+.|...++..++..+...+ +|+++.||+.+ ...++++++.+...+..+..+..+.....+.+ + +
T Consensus 70 ~~g~G~~~~l~~al~~~~~~~--~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~-~--~------- 137 (183)
T TIGR00454 70 ASGKGYIEDLNECIGELYFSE--PFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIPKEKYPNPS-I--D------- 137 (183)
T ss_pred cCCCCHHHHHHHHhhcccCCC--CEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEecccccCCCc-c--c-------
Confidence 456777889999988654322 89999999954 45589999987766665554444332111111 1 1
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
...++.+|+-++.+..-. ++ ++.+ +..++.-+.|||++|+..|+
T Consensus 138 ---------~~~~~p~g~n~~~~~~~~--~~------~~~~-----------~~~~~~~~nvnt~~d~~~~~ 181 (183)
T TIGR00454 138 ---------FNGLVPAGVNIVSSKNGY--QE------EEII-----------MVIDELIVNINTKDDLKLAE 181 (183)
T ss_pred ---------cccEeeeEEEEecCCCcc--cc------eeee-----------eccccceEecCCHHHHHHhh
Confidence 112678999999875111 10 0110 11123458999999998875
|
At this time this gene appears to be present only in Archea |
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=145.18 Aligned_cols=209 Identities=15% Similarity=0.199 Sum_probs=138.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.+||||||.|+||++ ..||+|++++|+|||+|+++.+..++ +++++|++++........+..... ...+.+...
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~--~~~~~~~~~ 76 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGL--SKVVKIVEG 76 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhccc--CCCeEEECC
Confidence 589999999999976 47999999999999999999999986 899999998776544433322111 122333322
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-cc-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SE-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
+.+...++..+++.+...+.+.++++.||+. +. ..++++++.+...+ ..+...+..++ ....+++ |.+.
T Consensus 77 --~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~~----~~~~~~~-g~~~ 147 (218)
T cd02516 77 --GATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVPVTDT----IKRVDDD-GVVV 147 (218)
T ss_pred --chHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEecccc----EEEecCC-Ccee
Confidence 2356789999999884111227999999994 33 44888988775543 33444443222 2334555 7787
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhccc---CCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIEL---KPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYIT 228 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~---~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~ 228 (256)
++.+... -....++ ++|+.+.+..+.. +...+..|....+.+.+ ++..+..+..-+||+||+||..
T Consensus 148 ~~~~r~~---~~~~~~P-~~f~~~~~~~~~~~~~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 148 ETLDREK---LWAAQTP-QAFRLDLLLKAHRQASEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred ecCChHH---hhhhcCC-CcccHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 7765321 1244555 8899888776632 11223356566666555 6777776666679999999964
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-19 Score=134.56 Aligned_cols=186 Identities=17% Similarity=0.310 Sum_probs=132.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChH-HHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~-~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.+||||||+|+||+. ||.|+|+.|+|++.++++.+.+++++++++|+++... ....... ..+++++.+++
T Consensus 7 ~~VvLAAGrssRmG~-----~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~~~~~~v~npd 77 (199)
T COG2068 7 AAVVLAAGRSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----QLGVTVVVNPD 77 (199)
T ss_pred EEEEEcccccccCCC-----cceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----cCCeEEEeCcc
Confidence 589999999999975 9999999999999999999999999999999998722 2222222 23678888877
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
+ ..|.+.|+..++.....++ +.++++.||+ +...++.++++.+...+ . +.... |+ |
T Consensus 78 ~-~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~--~v~p~------~~--------g--- 135 (199)
T COG2068 78 Y-AQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRARG-A--AVRPV------YG--------G--- 135 (199)
T ss_pred h-hhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhccccC-c--eeeee------cc--------C---
Confidence 7 6699999999999998764 3799999999 44566899988766652 2 11111 10 1
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcC-cEEEEEe-CceEEecCCHHHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVEN-KLFAMVL-PGFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~v~~~~~-~~~~~di~t~~d~~~a~~~~ 233 (256)
+..+ -.+|+++.|..+..-.-+ ..+...+.+.+ .+..++. .+.-.|||||+||.+++..+
T Consensus 136 ----~rG~---------Pv~~~~~~~~~l~~l~GD--~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~ 197 (199)
T COG2068 136 ----ARGH---------PVLLSKDLFPALARLSGD--VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLL 197 (199)
T ss_pred ----CcCC---------ceeechhHHHHHhhcCCc--hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhh
Confidence 1111 246777777776543222 22333333334 4555555 56789999999999998765
|
|
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-18 Score=131.34 Aligned_cols=220 Identities=21% Similarity=0.270 Sum_probs=166.4
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.+||+|.=.+|||.. |||..|+|+|||.|+.+++.+++.++++|.+ +.+.|.+.++++ |..+......
T Consensus 5 ~viIPAR~~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVAT--Dde~I~~av~~~----G~~avmT~~~ 72 (247)
T COG1212 5 VVIIPARLASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVAT--DDERIAEAVQAF----GGEAVMTSKD 72 (247)
T ss_pred EEEEecchhcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHh----CCEEEecCCC
Confidence 368899999999988 9999999999999999999999999999999 778888888876 6778877777
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCC-----CcCceeEEEcCCC
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDE-----PSKYGVVVMEETM 154 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~v~~~~~~ 154 (256)
.++|+ +.+..+...+...+.+.++=+.||..+ +..++++++.+..++++.+-++++..+ .++.-.++.|.+
T Consensus 73 h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~- 150 (247)
T COG1212 73 HQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKE- 150 (247)
T ss_pred CCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCC-
Confidence 77777 667777777754433478889999954 344899999888887777666666643 345556778887
Q ss_pred CeEeEEeecCCCCC-------CCeEEEEEEEeCHhhHHhccc-CCCCcch----hhHHHHHhcCcEEEEEeCceE-EecC
Q 046608 155 GKVEKFVEKPKNFV-------GNKINAGIYLLNPSVLDRIEL-KPTSIEK----EVFPEIAVENKLFAMVLPGFW-MDIG 221 (256)
Q Consensus 155 ~~v~~~~ek~~~~~-------~~~~~~Giy~~~~~~~~~l~~-~~~~~~~----~~~~~l~~~~~v~~~~~~~~~-~di~ 221 (256)
|+..-|++-+-... .-+.=.|+|.|+.+++...-. .+..++. +-++.|....++.+....... ..||
T Consensus 151 g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVD 230 (247)
T COG1212 151 GYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVD 230 (247)
T ss_pred CcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCC
Confidence 89999988654322 124568999999999887643 2222221 234445554588888877654 8999
Q ss_pred CHHHHHHHHHHHHh
Q 046608 222 QPKDYITGLRLYLD 235 (256)
Q Consensus 222 t~~d~~~a~~~~~~ 235 (256)
|||||.++.+.+.+
T Consensus 231 T~EDLe~v~~~~~~ 244 (247)
T COG1212 231 TPEDLERVRKILSN 244 (247)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999887654
|
|
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-18 Score=136.04 Aligned_cols=204 Identities=22% Similarity=0.240 Sum_probs=142.8
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEee-cc
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCS-QE 80 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~-~~ 80 (256)
|||||+|.|+||. +|.+++++|+|||.|+++.+.+++ +++|+|++ +.+.+.+..+++ +..+.+. +.
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVst--d~~~i~~~a~~~----g~~v~~~r~~ 69 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVST--DDEEIAEVAKSY----GASVPFLRPK 69 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeC--CCHHHHHHHHHc----CCEeEEeChH
Confidence 7999999999995 499999999999999999999987 68887766 345566665544 5655442 21
Q ss_pred ---CCcCCCcHHHHHHHhhhcC-CCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCC
Q 046608 81 ---TEPLGTAGPLALARDKLID-DSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETM 154 (256)
Q Consensus 81 ---~~~~g~~~s~~~~~~~i~~-~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~ 154 (256)
....|+.+++..+++.+.. ...+.++++.||..+ ..+++++++.+.+.++++++.+.+...+..+.. ..+++
T Consensus 70 ~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~~-~~~~~- 147 (222)
T TIGR03584 70 ELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRAF-KLKEN- 147 (222)
T ss_pred HHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHhe-EECCC-
Confidence 3356788999999988843 112379999999954 356999999888777888887777554333332 33344
Q ss_pred CeEeEEeecC----CCC--CCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCc-eEEecCCHHHHH
Q 046608 155 GKVEKFVEKP----KNF--VGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPG-FWMDIGQPKDYI 227 (256)
Q Consensus 155 ~~v~~~~ek~----~~~--~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~-~~~di~t~~d~~ 227 (256)
|.+..+.... ++. .....++++|+++++.+..-. .+ + .+++..+.++. .-+||||++||.
T Consensus 148 g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~~----~~----~-----~~~~~~~~m~~~~~iDID~~~D~~ 214 (222)
T TIGR03584 148 GGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLESG----PI----F-----SPHSIPIVLPRHLVQDIDTLEDWE 214 (222)
T ss_pred CcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhcC----Cc----c-----CCCcEEEEeCccceeCCCCHHHHH
Confidence 5554444211 111 122568999999999876411 11 1 35777888776 578999999999
Q ss_pred HHHHHH
Q 046608 228 TGLRLY 233 (256)
Q Consensus 228 ~a~~~~ 233 (256)
.|+..+
T Consensus 215 ~ae~l~ 220 (222)
T TIGR03584 215 RAELLY 220 (222)
T ss_pred HHHHHH
Confidence 997643
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=127.65 Aligned_cols=110 Identities=29% Similarity=0.438 Sum_probs=93.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||+|||+|+||+. .-|||++++|+|||.|+++.+.+ .+++|+++++++.+.+++++.+. +++++.
T Consensus 1 m~~iiMAGGrGtRmg~----~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~----gv~vi~--- 68 (177)
T COG2266 1 MMAIIMAGGRGTRMGR----PEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV----GVKVIE--- 68 (177)
T ss_pred CceEEecCCcccccCC----CcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc----CceEEE---
Confidence 7899999999999973 26999999999999999999999 58999999999999999999875 566653
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-cc-chHHHHHHHH
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EY-PLKQMIEFHR 126 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~-~~~~~~~~~~ 126 (256)
..+.|-..-+..+++.++. |++++++|+.+ .. .++.+++.+.
T Consensus 69 tpG~GYv~Dl~~al~~l~~----P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 69 TPGEGYVEDLRFALESLGT----PILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred cCCCChHHHHHHHHHhcCC----ceEEEecccccCCHHHHHHHHHHHh
Confidence 3456788899999999987 89999999954 43 3778877655
|
|
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=136.03 Aligned_cols=119 Identities=21% Similarity=0.363 Sum_probs=91.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||++ ||+|++++|+|||+|+++.+..+++++++|++++......+.+... ++.+... +
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~~----~~~~~~~-~ 70 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAGL----PVVVVIN-P 70 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcCC----CeEEEeC-C
Confidence 5789999999999976 8999999999999999999999888999999988766555444332 4444333 3
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCC
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGG 130 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~ 130 (256)
....|++.++..+++.+.. ..+++++++||+.+ ...++++++.+...+.
T Consensus 71 ~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 121 (186)
T cd04182 71 DWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGA 121 (186)
T ss_pred ChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 3356899999999998863 11289999999943 3447888887654443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=135.13 Aligned_cols=107 Identities=25% Similarity=0.345 Sum_probs=85.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+. ||++++++|+|||+|+++.+..+ +++|+|++++.... ... .++.++...
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~~----~~~----~~~~~v~~~- 65 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQER----YAL----LGVPVIPDE- 65 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChHH----Hhh----cCCcEeeCC-
Confidence 6799999999999976 89999999999999999999988 89999999877544 111 245554432
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHH
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFH 125 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~ 125 (256)
....|+..++..++..++.+ .+++++||+.+ . ..++.+++.+
T Consensus 66 ~~~~G~~~si~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 66 PPGKGPLAGILAALRAAPAD---WVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCCCCHHHHHHHHHhcCCC---eEEEEeCCcCCCCHHHHHHHHHhh
Confidence 24678999999999988754 79999999943 3 3477777765
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=134.49 Aligned_cols=181 Identities=16% Similarity=0.296 Sum_probs=117.3
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
+||||||.|+||++ ||+|++++|+|||+|+++.+.++++++++|++++..+.+.+.+.. .+++.++.... .
T Consensus 2 ~iIla~G~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~---~~~v~~v~~~~-~ 72 (188)
T TIGR03310 2 AIILAAGLSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLAN---HSNITLVHNPQ-Y 72 (188)
T ss_pred eEEECCCCcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc---CCCeEEEECcC-h
Confidence 79999999999964 899999999999999999999988999999998876554433321 23565554332 2
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-c-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVI-S-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
..|+.+++..+++.... .+++++++||+. + ...++++++.+.....++++.... + ++
T Consensus 73 ~~g~~~si~~~l~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~-------------~--~~---- 131 (188)
T TIGR03310 73 AEGQSSSIKLGLELPVQ--SDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVPLYK-------------G--KR---- 131 (188)
T ss_pred hcCHHHHHHHHhcCCCC--CCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEeecC-------------C--cc----
Confidence 46888999999872111 128999999994 3 345888888766554433322110 0 00
Q ss_pred eecCCCCCCCeEEEEEEEeCHhhHHhcccCC-CCcchhhHHHHHhcCcEEEEEeC--ceEEecCCHHHHHH
Q 046608 161 VEKPKNFVGNKINAGIYLLNPSVLDRIELKP-TSIEKEVFPEIAVENKLFAMVLP--GFWMDIGQPKDYIT 228 (256)
Q Consensus 161 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~-~~~~~~~~~~l~~~~~v~~~~~~--~~~~di~t~~d~~~ 228 (256)
..+ .+++++.+..+.... ..-...++..+. ..+..+.+. +.|+|||||+||.+
T Consensus 132 ----~~P---------l~~~~~~~~~l~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~nint~~d~~~ 187 (188)
T TIGR03310 132 ----GHP---------VLFPRKLFPELLALTGDTGGRQILRELP--HEVKYVEVKDPGILFDIDTPEDYQA 187 (188)
T ss_pred ----CCC---------EEECHHHHHHHHhCCCCccHHHHHHhCc--ccEEEEEcCCCceeECCCCHHHHhh
Confidence 011 147777777664321 111122332221 134445543 46889999999964
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-18 Score=137.91 Aligned_cols=214 Identities=11% Similarity=0.159 Sum_probs=136.5
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHHhhhhccCcEEEeec
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
.+||||||.|+||+. +.||+|++++|+|||.|+++.+..++ +++++|+++... ..+.+.+.+++.. ...+.++
T Consensus 4 ~~iIlAaG~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~-~~~~~~v- 78 (230)
T PRK13385 4 ELIFLAAGQGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA-DQRVEVV- 78 (230)
T ss_pred EEEEECCeeccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC-CCceEEc-
Confidence 589999999999974 57999999999999999999999874 899999996643 3333444443211 0012222
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKV 157 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (256)
..+.+..+++..++..++..+ .++++.||..+ . ..++++++.+.++++ .+...+..+ .+....+ +.+
T Consensus 79 -~~g~~r~~sv~~gl~~~~~~d--~vli~~~d~P~i~~~~i~~li~~~~~~~~--~~~~~~~~d-----ti~~~~~-~~~ 147 (230)
T PRK13385 79 -KGGTERQESVAAGLDRIGNED--VILVHDGARPFLTQDIIDRLLEGVAKYGA--AICAVEVKD-----TVKRVKD-KQV 147 (230)
T ss_pred -CCCchHHHHHHHHHHhccCCC--eEEEccCCCCCCCHHHHHHHHHHHhhCCc--EEEEEeccc-----eEEEEcC-Cee
Confidence 123345699999999885432 68899999944 3 448899888766543 333333322 2222223 444
Q ss_pred eEEeecCCCCCCCeEEEEEEEeCHhhHHhccc----CCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHH
Q 046608 158 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL----KPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRL 232 (256)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~----~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~ 232 (256)
....++. .-+..-+.+.|+.+.+....+ +...+ .+....+...| ++..++-+...+.|+||+|+..|+..
T Consensus 148 ~~~i~r~----~~~~~qtpq~f~~~~l~~~~~~~~~~~~~~-td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~ 222 (230)
T PRK13385 148 IETVDRN----ELWQGQTPQAFELKILQKAHRLASEQQFLG-TDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAI 222 (230)
T ss_pred EeccCHH----HHhhhcCCceeeHHHHHHHHHHHHhcCCCc-CcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHH
Confidence 4333211 112223467888777664421 22333 44444444445 78888777778899999999999877
Q ss_pred HHhh
Q 046608 233 YLDF 236 (256)
Q Consensus 233 ~~~~ 236 (256)
+...
T Consensus 223 l~~~ 226 (230)
T PRK13385 223 LQGD 226 (230)
T ss_pred Hhhc
Confidence 6543
|
|
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=132.54 Aligned_cols=120 Identities=28% Similarity=0.442 Sum_probs=96.3
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
+||||||.|+||+. ||+|++++|+|||+|+++.+.++++++|+|++++ +.+.+.+... +++++....+
T Consensus 1 ~vILa~G~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~----~~~~v~~~~~- 68 (160)
T PF12804_consen 1 AVILAAGKSSRMGG-----PKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY----GIKVVVDPEP- 68 (160)
T ss_dssp EEEEESSSCGGGTS-----CGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT----TSEEEE-STS-
T ss_pred CEEECCcCcccCCC-----CccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc----CceEEEeccc-
Confidence 69999999999965 9999999999999999999999999999999977 4555555433 6777665544
Q ss_pred cCCCcHHHHHHHhhh-cCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEE
Q 046608 83 PLGTAGPLALARDKL-IDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVT 137 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i-~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~ 137 (256)
..|++++++.++..+ ..+ +|++++||+++ + ..++++++.+.+.+.++++...
T Consensus 69 ~~G~~~sl~~a~~~~~~~~---~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 69 GQGPLASLLAALSQLPSSE---PVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp SCSHHHHHHHHHHTSTTSS---EEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred cCChHHHHHHHHHhcccCC---CcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 589999999999998 443 89999999954 4 4488999988777776655443
|
... |
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-18 Score=133.64 Aligned_cols=110 Identities=21% Similarity=0.262 Sum_probs=82.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+. .||++++++|+|||+|+++.+. .++++|+|++++..+.. ... +++++....
T Consensus 4 ~~~vILA~G~s~Rm~~----~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~~----~~~~v~~~~ 70 (193)
T PRK00317 4 ITGVILAGGRSRRMGG----VDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLARY----AAF----GLPVIPDSL 70 (193)
T ss_pred ceEEEEcCCCcccCCC----CCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHHH----Hhc----CCcEEeCCC
Confidence 6899999999999953 5899999999999999999998 56899999987653322 221 444443222
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHH
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHR 126 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~ 126 (256)
....|+..++..+++..+.+ .+++++||+.+ . ..+.++++...
T Consensus 71 ~~~~g~~~~i~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 71 ADFPGPLAGILAGLKQARTE---WVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred CCCCCCHHHHHHHHHhcCCC---eEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 23468889999999876544 79999999943 4 34777777544
|
|
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.8e-18 Score=132.11 Aligned_cols=123 Identities=12% Similarity=0.145 Sum_probs=88.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
+.+||||||.|+||+. ||.|++++|+|||+|+++.+...++++++|++++..+.+...........++.++.+.+
T Consensus 1 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T TIGR03202 1 IVAIYLAAGQSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRD 75 (190)
T ss_pred CeEEEEcCCccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCC
Confidence 4689999999999976 89999999999999999988888899999999876543221111111112455554444
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcC
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHG 129 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~ 129 (256)
+ ..|.++++..++..+...+.+.+++++||+.+ . ..+.++++....+.
T Consensus 76 ~-~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~ 125 (190)
T TIGR03202 76 A-CEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRP 125 (190)
T ss_pred h-hhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCC
Confidence 3 45888999999998743222389999999943 3 34778887655443
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-17 Score=126.93 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=85.2
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+. .||+|++++|+|||+|+++.+.. .+++|+|++++.... +... ..++.++....
T Consensus 1 ~~~iILAgG~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~---~~~~~~i~~~~ 69 (186)
T TIGR02665 1 ISGVILAGGRARRMGG----RDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPER---YAQA---GFGLPVVPDAL 69 (186)
T ss_pred CeEEEEcCCccccCCC----CCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc---cCCCcEEecCC
Confidence 5789999999999963 48999999999999999999986 489999988655422 1111 11445543322
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-cccc-hHHHHHHHHhcC
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~~~~-~~~~~~~~~~~~ 129 (256)
....|+..++..++..++.+ .+++++||+. ...+ ++++++....++
T Consensus 70 ~~~~g~~~si~~al~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 117 (186)
T TIGR02665 70 ADFPGPLAGILAGLRWAGTD---WVLTVPCDTPFLPEDLVARLAAALEASD 117 (186)
T ss_pred CCCCCCHHHHHHHHHhcCCC---eEEEEecCCCcCCHHHHHHHHHHhhccC
Confidence 34679999999999988654 7999999994 3433 777777654433
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-16 Score=127.58 Aligned_cols=211 Identities=14% Similarity=0.202 Sum_probs=131.7
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEccCCh-HHHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~-~i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (256)
+.+||||||.|+||+. ..||+|++++|+|+|+|+++.+... ++++|+|++++.. +.+.+.+..+ +..+.++
T Consensus 25 i~aIILAAG~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~----~~~i~~v 97 (252)
T PLN02728 25 VSVILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI----DVPLKFA 97 (252)
T ss_pred eEEEEEcccccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc----CCceEEc
Confidence 3689999999999975 6799999999999999999999985 7999999998764 3333444332 3334433
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
..+.+..+|++.++..+..+. +.++++.+|..+ ...+.++++....++ +++.+.+..+. ...++.+ +.
T Consensus 98 --~gg~~r~~SV~~gl~~l~~~~-~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~~~~~dt----ik~v~~~-~~ 167 (252)
T PLN02728 98 --LPGKERQDSVFNGLQEVDANS-ELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLGVPVKAT----IKEANSD-SF 167 (252)
T ss_pred --CCCCchHHHHHHHHHhccCCC-CEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEeecchhh----EEEecCC-Cc
Confidence 234556889999999886431 145566665633 344788888776654 45555554332 2222333 44
Q ss_pred EeEEeecCCCCCCCeEEEE-EEEeCHhhHHhcc----cCCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINAG-IYLLNPSVLDRIE----LKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~G-iy~~~~~~~~~l~----~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
|.... . ++.++.+- --.|+.+.+.... ++...+ .|-...+...| ++..++-+..-+-|+||+|+..|+
T Consensus 168 v~~t~---~--R~~l~~~QTPQ~F~~~~l~~a~~~~~~~~~~~-TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~ 241 (252)
T PLN02728 168 VVKTL---D--RKRLWEMQTPQVIKPELLRRGFELVEREGLEV-TDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAE 241 (252)
T ss_pred eeecc---C--hHHeEEEeCCccchHHHHHHHHHHHHhcCCCc-CcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHH
Confidence 43321 1 11111111 2255555544332 222222 45455555555 676666555677999999999998
Q ss_pred HHHH
Q 046608 231 RLYL 234 (256)
Q Consensus 231 ~~~~ 234 (256)
..+.
T Consensus 242 ~~l~ 245 (252)
T PLN02728 242 RILN 245 (252)
T ss_pred HHHh
Confidence 7654
|
|
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.7e-17 Score=126.41 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=82.6
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
+.+||||||.|+||+. +|++++++|+|||+|+++.+... +++++|++++. +....... .++.++...
T Consensus 8 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~~~~~-----~~~~~i~~~- 74 (200)
T PRK02726 8 LVALILAGGKSSRMGQ-----DKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWP-ERYQSLLP-----PGCHWLREP- 74 (200)
T ss_pred ceEEEEcCCCcccCCC-----CceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCH-HHHHhhcc-----CCCeEecCC-
Confidence 4689999999999965 89999999999999999999865 78999988642 22222111 134444332
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHh
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRG 127 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~ 127 (256)
....|...++..++..++.+ +++|++||+.+ . +.+.++++....
T Consensus 75 ~~~~G~~~si~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 75 PPSQGPLVAFAQGLPQIKTE---WVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCCCChHHHHHHHHHhCCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 33478999999999998754 89999999944 3 347788776543
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.7e-16 Score=133.11 Aligned_cols=234 Identities=19% Similarity=0.327 Sum_probs=166.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHh--hhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE--FEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~--~~~~~~~~v~~~ 78 (256)
++||++|--.-+||.|+|..+|++|+|+.|.|||+|+|+.|.++|+.++++.+.....++.+|+++ |+..+...+..+
T Consensus 25 LqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v~ti 104 (673)
T KOG1461|consen 25 LQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIVVTI 104 (673)
T ss_pred eEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccceEEEE
Confidence 479999999999999999999999999999999999999999999999999999889999999985 443334333333
Q ss_pred ccCCcCCCcHHHHHHH--hhhcCCCCCcEEEEeCCeecccchHHHHHHHHh-----cCCceEEEEEecC--CCcCceeEE
Q 046608 79 QETEPLGTAGPLALAR--DKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRG-----HGGEASIMVTKVD--EPSKYGVVV 149 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~--~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~--~~~~~~~v~ 149 (256)
...+....++++...- +.+.. .|++++||++++.++.++++.|+. .++-+|++..+.. .......+.
T Consensus 105 ~s~~~~S~GDamR~id~k~litg----DFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~a 180 (673)
T KOG1461|consen 105 CSGESRSVGDAMRDIDEKQLITG----DFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIA 180 (673)
T ss_pred cCCCcCcHHHHHHHHHhcceeec----ceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEE
Confidence 3333444444443222 22222 599999999999999999998842 2334444444431 123344667
Q ss_pred EcCCCCeEeEEee----cCC--------------CCCCCeEEEEEEEeCHhhHHhcccCC-CCcchhhHHHHHh----cC
Q 046608 150 MEETMGKVEKFVE----KPK--------------NFVGNKINAGIYLLNPSVLDRIELKP-TSIEKEVFPEIAV----EN 206 (256)
Q Consensus 150 ~~~~~~~v~~~~e----k~~--------------~~~~~~~~~Giy~~~~~~~~~l~~~~-~~~~~~~~~~l~~----~~ 206 (256)
+|.-+.++..+.+ +.. ....++.+++|.++++.++..+.++. +....+++.-++. +.
T Consensus 181 vd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNFDyq~r~DfV~GvL~~dilg~ 260 (673)
T KOG1461|consen 181 VDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNFDYQTRDDFVRGVLVDDILGY 260 (673)
T ss_pred EcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcccceehhhhhhhhhhhhhcCC
Confidence 7776678887775 111 01245888999999999988776542 1223455444432 23
Q ss_pred cEEEEEeCc--eEEecCCHHHHHHHHHHHHhhhc
Q 046608 207 KLFAMVLPG--FWMDIGQPKDYITGLRLYLDFLQ 238 (256)
Q Consensus 207 ~v~~~~~~~--~~~di~t~~d~~~a~~~~~~~~~ 238 (256)
++++..... +-..+.++..|-...+.++.++.
T Consensus 261 kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~ 294 (673)
T KOG1461|consen 261 KIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWT 294 (673)
T ss_pred eEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhc
Confidence 787777766 67799999999999999987653
|
|
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.9e-16 Score=121.31 Aligned_cols=209 Identities=17% Similarity=0.209 Sum_probs=131.6
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (256)
+.+||+|||.|+||+. +.||++++++|+|+|.|+++.+.+.. +++|++++.+.. +.+.+.+.+ ..+.++
T Consensus 1 V~aIilAaG~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----~~v~iv-- 71 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----KKVKIV-- 71 (221)
T ss_dssp EEEEEEESS-STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----TTEEEE--
T ss_pred CEEEEeCCccchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----CCEEEe--
Confidence 3689999999999986 78999999999999999999999975 899999997765 444444444 134433
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
..+....+|++.++..+.... +.++|+.|=-.+ . ..+.++++..... .++++.+.+..+ .....+.+ +.
T Consensus 72 --~GG~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~p~~D----Tik~v~~~-~~ 142 (221)
T PF01128_consen 72 --EGGATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPALPVTD----TIKRVDDD-GF 142 (221)
T ss_dssp --E--SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEEE-SS----EEEEESTT-SB
T ss_pred --cCChhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEEeccc----cEEEEecC-Cc
Confidence 245566789999999998754 389999998833 3 4488898887652 345566655543 33444555 66
Q ss_pred EeEEeecCCCCCCCeEEEE-EEEeCHhhHHhcccCC----CCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINAG-IYLLNPSVLDRIELKP----TSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~G-iy~~~~~~~~~l~~~~----~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
|.+..+ ++.++.+- --.|+.+.+....+.. ..+ .|-...+..-| ++..++-+..=+-|.||+|+..|+
T Consensus 143 v~~tld-----R~~l~~~QTPQ~F~~~~l~~a~~~a~~~~~~~-tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae 216 (221)
T PF01128_consen 143 VTETLD-----RSKLWAVQTPQAFRFELLLEAYEKADEEGFEF-TDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAE 216 (221)
T ss_dssp EEEEET-----GGGEEEEEEEEEEEHHHHHHHHHTHHHHTHHH-SSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHH
T ss_pred ccccCC-----HHHeeeecCCCeecHHHHHHHHHHHHhcCCCc-cCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHH
Confidence 666543 22333322 3466666666543221 122 23223333334 777777655567999999999998
Q ss_pred HHH
Q 046608 231 RLY 233 (256)
Q Consensus 231 ~~~ 233 (256)
..+
T Consensus 217 ~ll 219 (221)
T PF01128_consen 217 ALL 219 (221)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-16 Score=133.47 Aligned_cols=187 Identities=16% Similarity=0.215 Sum_probs=116.8
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+. .||+|++++|+|||+|+++.+... +++++|+++...+.+...+. ++.++....
T Consensus 6 i~~VILAgG~s~Rmgg----~~K~ll~i~Gkpll~~~i~~l~~~-~~~iivvv~~~~~~~~~~~~------~~~~i~d~~ 74 (366)
T PRK14489 6 IAGVILAGGLSRRMNG----RDKALILLGGKPLIERVVDRLRPQ-FARIHLNINRDPARYQDLFP------GLPVYPDIL 74 (366)
T ss_pred ceEEEEcCCcccCCCC----CCCceeEECCeeHHHHHHHHHHhh-CCEEEEEcCCCHHHHHhhcc------CCcEEecCC
Confidence 4699999999999952 489999999999999999999864 89999977655544433321 233332222
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-ccc-chHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEY-PLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|...+++.+++.++.+ .+++++||+. ... .+.++++.+...++++++. . .+ ++
T Consensus 75 ~g~~G~~~si~~gl~~~~~~---~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~---~-----------~g--~~-- 133 (366)
T PRK14489 75 PGFQGPLSGILAGLEHADSE---YLFVVACDTPFLPENLVKRLSKALAIEGADIAVP---H-----------DG--ER-- 133 (366)
T ss_pred CCCCChHHHHHHHHHhcCCC---cEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE---e-----------cC--CC--
Confidence 33368889999999988654 7999999994 343 3777777655444433221 1 00 11
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCc---eEEecCCHHHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPG---FWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~---~~~di~t~~d~~~a~~~~ 233 (256)
..+ . +.+|+++.+..+......-...+...+. ...+..++++. .+.|||||+||.++++..
T Consensus 134 ------g~P-----l--~aiy~~~~~~~l~~~l~~G~~~l~~~l~-~~~~~~v~~~~~~~~~~nINTpeDl~~l~~~~ 197 (366)
T PRK14489 134 ------AHP-----L--FALYHRSCLPALRRYLAEGERRLFDFFQ-RQRVRYVDLSTQKDAFFNVNTPEDLEQLRAIP 197 (366)
T ss_pred ------cee-----e--EEEEcHHHHHHHHHHHHhCCccHHHHHH-hCCcEEEeccCCccccccCCCHHHHHHHhhhh
Confidence 001 0 2256766666554210000122332222 23344555432 478999999999887653
|
|
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=118.69 Aligned_cols=212 Identities=16% Similarity=0.215 Sum_probs=135.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (256)
+.+||||||.|+||+. ..||++++++|+||++|.++.+.... +++|+|+++++. +.+.++... ..+-++.++
T Consensus 5 ~~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~---~~~~~v~~v 78 (230)
T COG1211 5 VSAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKL---SADKRVEVV 78 (230)
T ss_pred EEEEEEcCccccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhh---ccCCeEEEe
Confidence 4689999999999988 89999999999999999999999996 899999998743 344444421 112233333
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
..+....+|++.+++.+...++++|+|+.+--.+ ...+.++++. ..+..+++.+.+..+.- ...+.+ +.
T Consensus 79 --~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~--~~~~~aai~alpv~DTi----k~~~~~-~~ 149 (230)
T COG1211 79 --KGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIEL--ADKYGAAILALPVTDTL----KRVDAD-GN 149 (230)
T ss_pred --cCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHh--hccCCcEEEEeeccCcE----EEecCC-CC
Confidence 4566678999999999985223388999888843 3447888843 33344666666665432 222333 56
Q ss_pred EeEEeecCCCCCCCeEEEE-EEEeCHhhHHhccc----CCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINAG-IYLLNPSVLDRIEL----KPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~G-iy~~~~~~~~~l~~----~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
|.++.... .++-+- --.|+.+.|..... ....+. |--..+...| ++..+.-+-+=+-|.||+|+..|+
T Consensus 150 i~~t~~R~-----~l~~~QTPQ~F~~~~L~~a~~~a~~~~~~~t-Ddas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~ 223 (230)
T COG1211 150 IVETVDRS-----GLWAAQTPQAFRLELLKQALARAFAEGREIT-DDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAE 223 (230)
T ss_pred eeeccChh-----hhhhhhCCccccHHHHHHHHHHHHhcCCCcC-CHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHH
Confidence 65553311 111000 12455555443321 223332 3333333334 777776655677999999999998
Q ss_pred HHH
Q 046608 231 RLY 233 (256)
Q Consensus 231 ~~~ 233 (256)
..+
T Consensus 224 ~il 226 (230)
T COG1211 224 AIL 226 (230)
T ss_pred HHh
Confidence 654
|
|
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=121.25 Aligned_cols=187 Identities=18% Similarity=0.217 Sum_probs=114.7
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCCh--HHHHHHHHhhhhccCcEEEeec
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~--~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|||||||.|+||+ +|+|++++|+||++|+++.+..++ +++++|++++.. +.+.+++... ++.++...
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~----~v~~v~~~ 71 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKL----GVKVFRGS 71 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHc----CCeEEECC
Confidence 7999999999994 499999999999999999999987 899999998764 5555555432 55554433
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKV 157 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (256)
.+ +.......++...+.+ .++++.||+.+ ...++++++.+..++.+.+... +
T Consensus 72 ~~---~~l~~~~~~~~~~~~d---~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~------------------~-- 125 (233)
T cd02518 72 EE---DVLGRYYQAAEEYNAD---VVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNT------------------L-- 125 (233)
T ss_pred ch---hHHHHHHHHHHHcCCC---EEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEecC------------------C--
Confidence 22 2222223333332333 79999999944 3458899987776655544211 1
Q ss_pred eEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCC-CCcchhhH-HHHHhcC-cEEEEEeCc-------eEEecCCHHHHH
Q 046608 158 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKP-TSIEKEVF-PEIAVEN-KLFAMVLPG-------FWMDIGQPKDYI 227 (256)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~-~~~~~~~~-~~l~~~~-~v~~~~~~~-------~~~di~t~~d~~ 227 (256)
+ .+.-...|.-+|+...+..+.... .....+.+ ..+.+.. .+....+.+ ..+|||||+||.
T Consensus 126 -----~----~g~Pv~~~~~~~~~~~~~~l~~~~gd~g~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DiDt~eD~~ 196 (233)
T cd02518 126 -----P----RTYPDGLDVEVFTRDALERAAAEADDPYEREHVTPYIRRHPELFRIGYLEAPPDRLSDLRLTVDTPEDFE 196 (233)
T ss_pred -----C----CCCCCceEEEEEEHHHHHHHHHhCCChhhhcCCCHHHHhChHHeEEeeecCCcccCcCceEecCCHHHHH
Confidence 0 111122345577777776654221 11112222 1122222 233333332 278999999999
Q ss_pred HHHHHHH
Q 046608 228 TGLRLYL 234 (256)
Q Consensus 228 ~a~~~~~ 234 (256)
.++..+.
T Consensus 197 ~~~~~~~ 203 (233)
T cd02518 197 LIKEIYE 203 (233)
T ss_pred HHHHHHH
Confidence 8876654
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-15 Score=117.36 Aligned_cols=174 Identities=16% Similarity=0.223 Sum_probs=108.9
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCC-cchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFAN-KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g-~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
+.+||||||.|+||+. ||++++++| +|+|+|+++.+... +++++|++++. .. . ..+.++...
T Consensus 9 i~~vILAgG~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~~--~~----~-----~~~~~v~d~ 71 (196)
T PRK00560 9 IPCVILAGGKSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKDK--KF----E-----FNAPFLLEK 71 (196)
T ss_pred ceEEEECCcccccCCC-----CceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECch--hc----c-----cCCcEEecC
Confidence 4689999999999965 899999999 99999999999987 88999988751 11 1 123333222
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccc-hHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYP-LKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKV 157 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (256)
.....|+..++..++...+.+ .+++++||+.+ ..+ +.+++. ..+..+ +....+ ++
T Consensus 72 ~~~~~gpl~gi~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~---~~~~~~---------------~~~~~~-~~- 128 (196)
T PRK00560 72 ESDLFSPLFGIINAFLTLQTP---EIFFISVDTPFVSFESIKKLCG---KENFSV---------------TYAKSP-TK- 128 (196)
T ss_pred CCCCCCcHHHHHHHHHhcCCC---eEEEEecCcCcCCHHHHHHHHh---cCCCCE---------------EEEccC-Cc-
Confidence 334557777777776666554 79999999954 433 455522 111111 111111 11
Q ss_pred eEEeecCCCCCCCeEEEEEEEeCHhhHHhccc----CCCCcchhhHHHHHhcCcEEEEEeCc--eEEecCCHHHHHHHHH
Q 046608 158 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL----KPTSIEKEVFPEIAVENKLFAMVLPG--FWMDIGQPKDYITGLR 231 (256)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~----~~~~~~~~~~~~l~~~~~v~~~~~~~--~~~di~t~~d~~~a~~ 231 (256)
..--+.+|+++.+..+.. +... +..+++...+..+.+.+ .|.|||||+||.++.+
T Consensus 129 --------------~~Pl~al~~~~~~~~l~~~l~~~~~~-----~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~ 189 (196)
T PRK00560 129 --------------EHYLISLWHQSLLNALIYALKTQNYR-----LSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQ 189 (196)
T ss_pred --------------eeeeEEEEcHHHHHHHHHHHHhCCcc-----HHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHH
Confidence 001135788887776542 2111 12233333455555544 5789999999998876
Q ss_pred HH
Q 046608 232 LY 233 (256)
Q Consensus 232 ~~ 233 (256)
.+
T Consensus 190 ~~ 191 (196)
T PRK00560 190 IL 191 (196)
T ss_pred HH
Confidence 54
|
|
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-15 Score=112.36 Aligned_cols=205 Identities=18% Similarity=0.173 Sum_probs=143.2
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEe-ecc
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITC-SQE 80 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~-~~~ 80 (256)
|||||.|.++|... |.+.+++|+|||.|.|+.+.+++ +++|+|.+ +.+.|.+..+++ |.++.+ .+.
T Consensus 6 AiIpAR~gSKgI~~------KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~y----gak~~~~Rp~ 73 (228)
T COG1083 6 AIIPARGGSKGIKN------KNIRKFGGKPLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKKY----GAKVFLKRPK 73 (228)
T ss_pred EEEeccCCCCcCCc------cchHHhCCcchHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHHh----CccccccCCh
Confidence 89999999999976 99999999999999999999998 78888877 677777777766 555532 222
Q ss_pred CCcCCCc---HHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCC
Q 046608 81 TEPLGTA---GPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMG 155 (256)
Q Consensus 81 ~~~~g~~---~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~ 155 (256)
.-..+++ .++.++++....+.+ .++++.+.... ..++++.++.+..++.+.++.+++-+......... .+ |
T Consensus 74 ~LA~D~ast~~~~lh~le~~~~~~~-~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f~~--~~-~ 149 (228)
T COG1083 74 ELASDRASTIDAALHALESFNIDED-TLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFSL--NN-G 149 (228)
T ss_pred hhccCchhHHHHHHHHHHHhccccC-eeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHHHHh--cC-C
Confidence 2233333 455677776665432 68888888833 45699999999998899888888776543222221 22 5
Q ss_pred eEeEEeecCC-----C--CCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCc-eEEecCCHHHHH
Q 046608 156 KVEKFVEKPK-----N--FVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPG-FWMDIGQPKDYI 227 (256)
Q Consensus 156 ~v~~~~ek~~-----~--~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~-~~~di~t~~d~~ 227 (256)
.|..+.+.+. + +.....++.+|+++++.|..-. .-| ..+...|.++. ..+||||+.|+.
T Consensus 150 ~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~~---~~f----------~~~~~~y~m~~~~~~DID~~~Dl~ 216 (228)
T COG1083 150 EVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALLEND---CFF----------IPNTILYEMPEDESIDIDTELDLE 216 (228)
T ss_pred ceeecccCCccccccccchhhhhhcCcEEEehHHHHhhcC---cee----------cCCceEEEcCcccccccccHHhHH
Confidence 5666655542 1 1123557779999998887622 111 13445666655 578999999999
Q ss_pred HHHHHHHhh
Q 046608 228 TGLRLYLDF 236 (256)
Q Consensus 228 ~a~~~~~~~ 236 (256)
.|+..+..+
T Consensus 217 iae~l~~~~ 225 (228)
T COG1083 217 IAENLIFLK 225 (228)
T ss_pred HHHHHhhhh
Confidence 998877554
|
|
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-15 Score=114.57 Aligned_cols=110 Identities=20% Similarity=0.327 Sum_probs=79.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||+|+|| . +|+|++++|+||++|+++.|.... +.++|+...+.+. +. .++.+++.-.
T Consensus 5 ~~~vILAGG~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~-~~vvi~~~~~~~~---~~-----~~g~~vv~D~- 68 (192)
T COG0746 5 MTGVILAGGKSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQV-DVVVISANRNQGR---YA-----EFGLPVVPDE- 68 (192)
T ss_pred ceEEEecCCccccc-c-----ccccceeCCeEHHHHHHHHhcccC-CEEEEeCCCchhh---hh-----ccCCceeecC-
Confidence 68999999999999 5 799999999999999999999984 4444444333221 11 1255554322
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccc-hHHHHHHHHhcC
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYP-LKQMIEFHRGHG 129 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~-~~~~~~~~~~~~ 129 (256)
....|...+++.|+...+.+ ++++++||+.+ ..+ +..+++...+.+
T Consensus 69 ~~~~GPL~Gi~~al~~~~~~---~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 69 LPGFGPLAGILAALRHFGTE---WVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CCCCCCHHHHHHHHHhCCCC---eEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 22339999999999999966 89999999954 333 566666544444
|
|
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-14 Score=123.60 Aligned_cols=107 Identities=21% Similarity=0.349 Sum_probs=79.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+. +|+|++++|+|||+|+++.+... +++++|++++.... .+.. .+++++...
T Consensus 175 i~~iILAGG~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~~~---~~~~----~~v~~i~d~- 240 (369)
T PRK14490 175 LSGLVLAGGRSSRMGS-----DKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQAE---QYRS----FGIPLITDS- 240 (369)
T ss_pred ceEEEEcCCccccCCC-----CcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCchhh---HHhh----cCCcEEeCC-
Confidence 4689999999999965 89999999999999999999875 78888877654221 1222 256665433
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-cc-chHHHHHH
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EY-PLKQMIEF 124 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~-~~~~~~~~ 124 (256)
....|...++..++...+.+ .++++.||+.+ .. .+..+++.
T Consensus 241 ~~~~Gpl~gi~~al~~~~~~---~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 241 YLDIGPLGGLLSAQRHHPDA---AWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred CCCCCcHHHHHHHHHhCCCC---cEEEEeCCcCCCCHHHHHHHHHh
Confidence 33568889999988876654 69999999944 43 36666653
|
|
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-14 Score=118.19 Aligned_cols=108 Identities=15% Similarity=0.196 Sum_probs=79.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
+.+||||||.|+||+. +|.|++++|+||++|+++.+... +++++|++++... . ... ...+.++...
T Consensus 161 i~~IILAGGkSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~~~--~-~~~----~~~v~~I~D~- 226 (346)
T PRK14500 161 LYGLVLTGGKSRRMGK-----DKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPSQW--Q-GTP----LENLPTLPDR- 226 (346)
T ss_pred ceEEEEeccccccCCC-----CcccceeCCccHHHHHHHHHHhh-CCEEEEEeCchHh--h-hcc----ccCCeEEeCC-
Confidence 3689999999999965 99999999999999999998876 7889888754321 1 100 0033444333
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccc-hHHHHHHH
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYP-LKQMIEFH 125 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~-~~~~~~~~ 125 (256)
....|...+++.++...+.+ .++++.||+.+ +.+ +..+++.+
T Consensus 227 ~~~~GPlagI~aaL~~~~~~---~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 227 GESVGPISGILTALQSYPGV---NWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCCCChHHHHHHHHHhCCCC---CEEEEECCcCCCCHHHHHHHHHhh
Confidence 34579999999999987654 68999999954 433 66777754
|
|
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-13 Score=111.27 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=96.0
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeC---CcchHHHHHHHHHH--------cCCCEEEEEccCChHHHHHHHHhhhhc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKA--------VGVTEVVLAINYQPEVMLNFLKEFEKK 70 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~---g~pli~~~l~~l~~--------~~i~~i~vv~~~~~~~i~~~~~~~~~~ 70 (256)
-+|+||||.||||+. ..||+|+|++ |+|++++.++++.. .++..+++.+.+..+.+.+++++....
T Consensus 2 a~viLaGG~GtRLg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~ 78 (266)
T cd04180 2 AVVLLAGGLGTRLGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQK 78 (266)
T ss_pred EEEEECCCCccccCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCC
Confidence 478999999999974 7899999999 99999999999986 246666666667788899999885412
Q ss_pred cCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEE------EecCCCcC
Q 046608 71 LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMV------TKVDEPSK 144 (256)
Q Consensus 71 ~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~ 144 (256)
.+..+.+..+..+..+.++.....+.... ++...-+||.+.......+++.+.+.+...+.+. ....+|..
T Consensus 79 ~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~---~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~ 155 (266)
T cd04180 79 NSYVITFMQGKLPLKNDDDARDPHNKTKC---HLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLF 155 (266)
T ss_pred CCceEEEEeCCceEEeCCCCcccCCCCce---eeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHH
Confidence 22333333333344444433321111111 1455666666554444556666666665432222 12224555
Q ss_pred ceeEEEcCCCCeEeEEeecCC
Q 046608 145 YGVVVMEETMGKVEKFVEKPK 165 (256)
Q Consensus 145 ~~~v~~~~~~~~v~~~~ek~~ 165 (256)
+|++..+.. +.+..+.+|+.
T Consensus 156 lG~~~~~~~-~~~~kvv~K~~ 175 (266)
T cd04180 156 IGIAIQNRK-AINQKVVPKTR 175 (266)
T ss_pred HHHHHHcCC-CEEEEEEECCC
Confidence 665555444 56666666654
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.4e-11 Score=94.94 Aligned_cols=116 Identities=23% Similarity=0.263 Sum_probs=86.1
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
|||+|.|.++|+.. |+|.+++|+|||.|+++++.+++ +++|+|.| +.+.+.+.+.++ ++.+......
T Consensus 2 aiIpAR~gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaT--d~~~i~~~~~~~----g~~v~~~~~~ 69 (217)
T PF02348_consen 2 AIIPARGGSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVAT--DDEEIDDIAEEY----GAKVIFRRGS 69 (217)
T ss_dssp EEEEE-SSSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEE--SSHHHHHHHHHT----TSEEEE--TT
T ss_pred EEEecCCCCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeC--CCHHHHHHHHHc----CCeeEEcChh
Confidence 89999999999988 99999999999999999999996 79999888 666777777766 5667666555
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCc
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGE 131 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~ 131 (256)
...++ .+...+......+..+.++.+.||..+ + ..+.++++.+.+...+
T Consensus 70 ~~~~~-~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 70 LADDT-DRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp SSSHH-HHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred hcCCc-ccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 44444 344444444443333378999999944 3 4589999988888765
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.9e-10 Score=92.21 Aligned_cols=183 Identities=21% Similarity=0.274 Sum_probs=114.8
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeC---CcchHHHHHHHHHHcC-----------CCEEEEEcc-CChHHHHHHHH
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKAVG-----------VTEVVLAIN-YQPEVMLNFLK 65 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~---g~pli~~~l~~l~~~~-----------i~~i~vv~~-~~~~~i~~~~~ 65 (256)
|.+||||||.||||+. ..||+|+|++ |+|++++.++++.... .-.+++.++ +..+.+.++++
T Consensus 16 va~viLaGG~GTRLg~---~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~~~ 92 (323)
T cd04193 16 VAVLLLAGGQGTRLGF---DGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKFFK 92 (323)
T ss_pred EEEEEECCCcccccCC---CCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHHHH
Confidence 4689999999999954 7899999997 7999999999998842 124567777 66888999998
Q ss_pred hhhhccCc---EEEeecc---------------------CCcCCCcHHHHH-----HHhhhcCCCCCcEEEEeCCeeccc
Q 046608 66 EFEKKLEI---KITCSQE---------------------TEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVISEY 116 (256)
Q Consensus 66 ~~~~~~~~---~v~~~~~---------------------~~~~g~~~s~~~-----~~~~i~~~~~~~~lv~~~D~~~~~ 116 (256)
+. +.+|+ ++.+..| +.+.|.++-+.. .++.+...+-+++.+...|.+.-.
T Consensus 93 ~~-~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~ 171 (323)
T cd04193 93 EN-NYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVK 171 (323)
T ss_pred hC-CcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccccc
Confidence 62 33344 4443333 235555543332 234444433448999999995432
Q ss_pred ch-HHHHHHHHhcCCceEEEEEecCCC-cCceeEEE-cCCCCeEeEEeecCCCC------CCC----eEEEEEEEeCHhh
Q 046608 117 PL-KQMIEFHRGHGGEASIMVTKVDEP-SKYGVVVM-EETMGKVEKFVEKPKNF------VGN----KINAGIYLLNPSV 183 (256)
Q Consensus 117 ~~-~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~-~~~~~~v~~~~ek~~~~------~~~----~~~~Giy~~~~~~ 183 (256)
.. -.++..+.+++.+..+-+++...+ ..-|.+.. |.. -.|.++.+-|... .+. ..|+.+.+|+-++
T Consensus 172 ~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~-~~vvEysel~~~~~~~~~~~g~l~f~~~ni~~~~fsl~f 250 (323)
T cd04193 172 VADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGK-PQVVEYSEISDELAEKRDADGELQYNAGNIANHFFSLDF 250 (323)
T ss_pred ccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCe-EEEEEeecCCHHHHhccCcCCcEecccchHhhheeCHHH
Confidence 22 355667777888888877666544 34454433 322 3456666654311 111 2233455677777
Q ss_pred HHhcc
Q 046608 184 LDRIE 188 (256)
Q Consensus 184 ~~~l~ 188 (256)
++.+.
T Consensus 251 l~~~~ 255 (323)
T cd04193 251 LEKAA 255 (323)
T ss_pred HHHHH
Confidence 76653
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-09 Score=91.80 Aligned_cols=183 Identities=20% Similarity=0.300 Sum_probs=112.7
Q ss_pred CeEEEEeCCCCCccccCCCCCCCcccee---CCcchHHHHHHHHHHc--------------CCCEEEEEccCChHHHHHH
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAV--------------GVTEVVLAINYQPEVMLNF 63 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i---~g~pli~~~l~~l~~~--------------~i~~i~vv~~~~~~~i~~~ 63 (256)
|.+||||||.||||+. ..||+|++| .|+|++++.++++... .+.-+++.+.+..+.+.++
T Consensus 107 vavViLAGG~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~ 183 (482)
T PTZ00339 107 VAVLILAGGLGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQF 183 (482)
T ss_pred eEEEEECCCCcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHH
Confidence 4689999999999975 889999999 4899999999999875 1343444445668888899
Q ss_pred HHhhhhccCc---EEEeecc----------------------CCcCCCcHHHHH-----HHhhhcCCCCCcEEEEeCCee
Q 046608 64 LKEFEKKLEI---KITCSQE----------------------TEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVI 113 (256)
Q Consensus 64 ~~~~~~~~~~---~v~~~~~----------------------~~~~g~~~s~~~-----~~~~i~~~~~~~~lv~~~D~~ 113 (256)
+++. ..+|+ .+.+..| +.+.|+++-+.. .++.+...+-+++.+...|.+
T Consensus 184 f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~ 262 (482)
T PTZ00339 184 LEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNI 262 (482)
T ss_pred HHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcc
Confidence 8753 22222 2222222 134555543332 134454444448999999996
Q ss_pred cccch-HHHHHHHHhcCC-ceEEEEEecCCCcCceeEEEcCCCCeEeEEeecCCC------C-CC----CeEEEEEEEeC
Q 046608 114 SEYPL-KQMIEFHRGHGG-EASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKN------F-VG----NKINAGIYLLN 180 (256)
Q Consensus 114 ~~~~~-~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~ek~~~------~-~~----~~~~~Giy~~~ 180 (256)
.-... -.++.+....+. ++...+.+......-|.+....+.-.|.++.|-+.. . .+ ...++...+|+
T Consensus 263 L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~~h~fs 342 (482)
T PTZ00339 263 LAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNICSHIFS 342 (482)
T ss_pred cccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccceEEEEEE
Confidence 54322 344555566666 665555544333445655433221257777774321 1 11 25678889999
Q ss_pred HhhHHhc
Q 046608 181 PSVLDRI 187 (256)
Q Consensus 181 ~~~~~~l 187 (256)
-++++.+
T Consensus 343 l~fl~~~ 349 (482)
T PTZ00339 343 LDFLKKV 349 (482)
T ss_pred HHHHHHH
Confidence 8888754
|
|
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=83.60 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=63.7
Q ss_pred CCCccceeCC--cchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhc
Q 046608 21 VPKPLVDFAN--KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (256)
Q Consensus 21 ~pK~ll~i~g--~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~ 98 (256)
.+|+|++++| +|||+|+++.+.. .+++++|++++... ... .+++++. ......|...++..++....
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~~-~~~~iivv~~~~~~-----~~~----~~~~~i~-d~~~g~gpl~~~~~gl~~~~ 71 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVGQ-RCAPVFVMAAPGQP-----LPE----LPAPVLR-DELRGLGPLPATGRGLRAAA 71 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHhh-cCCEEEEECCCCcc-----ccc----CCCCEec-cCCCCCCcHHHHHHHHHHHH
Confidence 4899999999 9999999998775 48999999976421 111 1344442 33445677777776676542
Q ss_pred CCCCCcEEEEeCCeec-ccc-hHHHHHHHH
Q 046608 99 DDSGEPFFVLNSDVIS-EYP-LKQMIEFHR 126 (256)
Q Consensus 99 ~~~~~~~lv~~~D~~~-~~~-~~~~~~~~~ 126 (256)
....++++++.||+.+ +.+ +.++++.+.
T Consensus 72 ~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 72 EAGARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred hcCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 1112289999999944 433 667776543
|
|
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-06 Score=72.38 Aligned_cols=222 Identities=18% Similarity=0.282 Sum_probs=134.7
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee-CCcchHHHHHHHHHHc----CC-CEEEEEccCC-hHHHHHHHHhhhhccCcE
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV----GV-TEVVLAINYQ-PEVMLNFLKEFEKKLEIK 74 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i-~g~pli~~~l~~l~~~----~i-~~i~vv~~~~-~~~i~~~~~~~~~~~~~~ 74 (256)
-+|+||||.||||+- ..||.++|+ .|+++++..+++++.. +. -..+|.++.. ++.+.++++++.. ....
T Consensus 5 avl~LaGG~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~-~~~~ 80 (300)
T cd00897 5 VVLKLNGGLGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG-VNVD 80 (300)
T ss_pred EEEEecCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC-CccC
Confidence 368889999999977 789999999 7889999999888653 31 2456666655 6778888887542 1122
Q ss_pred EEeecc------------------------CCcCCCcHHHHHH-----HhhhcCCCCCcEEEEeCCeecccch-HHHHHH
Q 046608 75 ITCSQE------------------------TEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVISEYPL-KQMIEF 124 (256)
Q Consensus 75 v~~~~~------------------------~~~~g~~~s~~~~-----~~~i~~~~~~~~lv~~~D~~~~~~~-~~~~~~ 124 (256)
+.+..| +.+.|.++-+... ++.+...+-+++.+...|++.. .. -.++.+
T Consensus 81 v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a-~~Dp~~lg~ 159 (300)
T cd00897 81 IHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGA-TVDLRILNH 159 (300)
T ss_pred eEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccc-cCCHHHHHH
Confidence 221111 2344554433221 2334333344899999999532 23 356677
Q ss_pred HHhcCCceEEEEEecCCCc-CceeEEE-cCCCCeEeEEeecCCCC--------CCCeEEEEEEEeCHhhHHhcccC----
Q 046608 125 HRGHGGEASIMVTKVDEPS-KYGVVVM-EETMGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRIELK---- 190 (256)
Q Consensus 125 ~~~~~~~~~i~~~~~~~~~-~~~~v~~-~~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~~~~l~~~---- 190 (256)
+..++++.++=+++...+. .-|.+.. +.. -+|.++.+-|... .-...+++..+++-++++.+.+.
T Consensus 160 ~~~~~~~~~~evv~Kt~~dek~G~l~~~~g~-~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~~~~~~~~ 238 (300)
T cd00897 160 MVDNKAEYIMEVTDKTRADVKGGTLIQYEGK-LRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRVVEENALD 238 (300)
T ss_pred HHhcCCceEEEEeecCCCCCcccEEEEECCE-EEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHHHHhccCC
Confidence 7888888888666654443 4454433 322 3567777765421 12377899999998887765210
Q ss_pred ---------------CCCcch---hhHHHHHhcCcEEEEEeCc-eEEecCCHHHHHHHHHH
Q 046608 191 ---------------PTSIEK---EVFPEIAVENKLFAMVLPG-FWMDIGQPKDYITGLRL 232 (256)
Q Consensus 191 ---------------~~~~~~---~~~~~l~~~~~v~~~~~~~-~~~di~t~~d~~~a~~~ 232 (256)
...+|. ++++.. ....++.+.- .|..+.+.+|++-.+..
T Consensus 239 lp~h~~~K~v~p~~~~~qlE~~i~da~~~~---~~~~~~eV~R~rF~PvKn~~dll~~~sd 296 (300)
T cd00897 239 LEIIVNPKTVDGGLNVIQLETAVGAAIKNF---DNALGVNVPRSRFLPVKTTSDLLLVRSD 296 (300)
T ss_pred CCeeecccccCCCCCEEEeHhHhhhHHHhC---CCcEEEEEChhhcCCCCChHHHHhhhhc
Confidence 011222 233222 2333444332 58899999999866543
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-06 Score=75.85 Aligned_cols=230 Identities=16% Similarity=0.237 Sum_probs=139.2
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee-CCcchHHHHHHHHHHc----CC-CEEEEEccCC-hHHHHHHHHhhhhccCcE
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV----GV-TEVVLAINYQ-PEVMLNFLKEFEKKLEIK 74 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i-~g~pli~~~l~~l~~~----~i-~~i~vv~~~~-~~~i~~~~~~~~~~~~~~ 74 (256)
-+|+||||.||||+. ..||.++++ .|+++++..++++... |. -..++.++.. ++.+.++++++. .++.+
T Consensus 81 avlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~-~~~~~ 156 (469)
T PLN02474 81 VVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYT-NSNIE 156 (469)
T ss_pred EEEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcC-CCccc
Confidence 368889999999998 789999999 7899999888877554 32 2346666655 677888888753 22334
Q ss_pred EEeecc------------------------CCcCCCcHHHHHH-----HhhhcCCCCCcEEEEeCCeecccch-HHHHHH
Q 046608 75 ITCSQE------------------------TEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVISEYPL-KQMIEF 124 (256)
Q Consensus 75 v~~~~~------------------------~~~~g~~~s~~~~-----~~~i~~~~~~~~lv~~~D~~~~~~~-~~~~~~ 124 (256)
+.+..| +.+.|.++-+... ++.+...+-+++.+...|++-. .+ -.++.+
T Consensus 157 i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga-~vDp~~lg~ 235 (469)
T PLN02474 157 IHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGA-IVDLKILNH 235 (469)
T ss_pred eEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCcccc-ccCHHHHHH
Confidence 432222 2344554433211 3444444445899999999532 22 356677
Q ss_pred HHhcCCceEEEEEecCCCc-CceeEE-EcCCCCeEeEEeecCCCC--------CCCeEEEEEEEeCHhhHHhcccC----
Q 046608 125 HRGHGGEASIMVTKVDEPS-KYGVVV-MEETMGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRIELK---- 190 (256)
Q Consensus 125 ~~~~~~~~~i~~~~~~~~~-~~~~v~-~~~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~~~~l~~~---- 190 (256)
+..++++.++=+++...+. .-|.+. .+.. -++.++.+-|... .-...|++.++|+-++++.+.+.
T Consensus 236 ~~~~~~e~~~ev~~Kt~~d~kgG~l~~~dgk-~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~~~~~l~ 314 (469)
T PLN02474 236 LIQNKNEYCMEVTPKTLADVKGGTLISYEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314 (469)
T ss_pred HHhcCCceEEEEeecCCCCCCccEEEEECCE-EEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHhhcCCCC
Confidence 7778888887666544332 234443 2322 2467777755421 12378999999999888876211
Q ss_pred ------C--------CCcchhhHHHHHhcCcEEEEEeCc-eEEecCCHHHHHHHHHHHHhhh
Q 046608 191 ------P--------TSIEKEVFPEIAVENKLFAMVLPG-FWMDIGQPKDYITGLRLYLDFL 237 (256)
Q Consensus 191 ------~--------~~~~~~~~~~l~~~~~v~~~~~~~-~~~di~t~~d~~~a~~~~~~~~ 237 (256)
. ..+|.-+...+-.-....++.+.- .|..|.+.+|++.++..+....
T Consensus 315 ~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~ 376 (469)
T PLN02474 315 MEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLV 376 (469)
T ss_pred ceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhc
Confidence 0 011111111111112233344332 5889999999999988776543
|
|
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.5e-08 Score=74.19 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=84.0
Q ss_pred EEEE-eCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCC--hHHHHHHHHhhhhccCcEEEee
Q 046608 3 ALIL-VGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 3 aiIl-aaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~--~~~i~~~~~~~~~~~~~~v~~~ 78 (256)
++|+ |.=.+|||.+ |.|+|++++|||.++|++++.+. +++++|.|+.. .+.+++++.+. |+.+.
T Consensus 5 ~~IiQARmgStRLpg------KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~----G~~vf-- 72 (241)
T COG1861 5 LVIIQARMGSTRLPG------KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH----GFYVF-- 72 (241)
T ss_pred EEEeeecccCccCCc------chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc----CeeEe--
Confidence 4455 4556788877 99999999999999999999996 78999999755 34455666543 55553
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccc-hHHHHHHHHhcCCce
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYP-LKQMIEFHRGHGGEA 132 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~-~~~~~~~~~~~~~~~ 132 (256)
+.....-...+..+.+..+.+ .++=++||..+ +.. ++.+++.+.++++|-
T Consensus 73 -rGs~~dVL~Rf~~a~~a~~~~---~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 73 -RGSEEDVLQRFIIAIKAYSAD---VVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred -cCCHHHHHHHHHHHHHhcCCC---eEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 222223456677888888877 79999999944 333 688899888888764
|
|
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.9e-06 Score=70.74 Aligned_cols=225 Identities=21% Similarity=0.264 Sum_probs=126.8
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee-CCcchHHHHHHHHHHc----C-CCEEEEEccCC-hHHHHHHHHhhhhccCcE
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV----G-VTEVVLAINYQ-PEVMLNFLKEFEKKLEIK 74 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i-~g~pli~~~l~~l~~~----~-i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~ 74 (256)
-+|+||||.||||+. ..||.++++ .|+++++..++++... + .-..+|.++.. .+.+.+++++|. ..+.+
T Consensus 58 avl~LaGGlGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyf-g~~~~ 133 (420)
T PF01704_consen 58 AVLKLAGGLGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYF-GLDVD 133 (420)
T ss_dssp EEEEEEESBSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGC-GSSCC
T ss_pred EEEEEcCcccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhc-CCCcc
Confidence 367799999999987 789999999 7788999888877652 3 22455666554 788889998743 12222
Q ss_pred EEeecc--------------------------CCcCCCcHHHH--H---HHhhhcCCCCCcEEEEeCCeecccch-HHHH
Q 046608 75 ITCSQE--------------------------TEPLGTAGPLA--L---ARDKLIDDSGEPFFVLNSDVISEYPL-KQMI 122 (256)
Q Consensus 75 v~~~~~--------------------------~~~~g~~~s~~--~---~~~~i~~~~~~~~lv~~~D~~~~~~~-~~~~ 122 (256)
+.+..| +.+.|.++-+. . .++.+...+-+++.+...|.+. ... -.++
T Consensus 134 v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~-a~~Dp~~l 212 (420)
T PF01704_consen 134 VFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLG-AVVDPVFL 212 (420)
T ss_dssp EEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT--TT-HHHH
T ss_pred eEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcc-cccCHHHH
Confidence 322211 01335554222 1 2234433333489999999933 233 3567
Q ss_pred HHHHhcCCceEEEEEecCCC-cCceeEEEcCCCC--eEeEEeecCCC--------CCCCeEEEEEEEeCHhhHHhcccC-
Q 046608 123 EFHRGHGGEASIMVTKVDEP-SKYGVVVMEETMG--KVEKFVEKPKN--------FVGNKINAGIYLLNPSVLDRIELK- 190 (256)
Q Consensus 123 ~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~~~~~--~v~~~~ek~~~--------~~~~~~~~Giy~~~~~~~~~l~~~- 190 (256)
..+.+++.+..+-+++...+ ..-|.+... + | .|.++.+-|.. ......++|-.+++-++++.+.+.
T Consensus 213 G~~~~~~~~~~~evv~Kt~~dek~Gvl~~~-~-G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~~~~~ 290 (420)
T PF01704_consen 213 GYMIEKNADFGMEVVPKTSPDEKGGVLCRY-D-GKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRLLERD 290 (420)
T ss_dssp HHHHHTT-SEEEEEEE-CSTTTSSEEEEEE-T-TEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHHHHTT
T ss_pred HHHHhccchhheeeeecCCCCCceeEEEEe-C-CccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHHHHhc
Confidence 77778888888877776554 334544432 3 4 45566554431 112367888889998888865321
Q ss_pred C---------------------CCcchhhHHHHHhcCcEEEEEeC-ceEEecCCHHHHHHHHHHH
Q 046608 191 P---------------------TSIEKEVFPEIAVENKLFAMVLP-GFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 191 ~---------------------~~~~~~~~~~l~~~~~v~~~~~~-~~~~di~t~~d~~~a~~~~ 233 (256)
. ..++..+...+-.-....++.+. ..|..+.+..||+..+..+
T Consensus 291 ~~~Lp~h~a~Kki~~~d~~~~~~q~Et~i~~~i~~f~~~~~v~V~R~rF~PvKn~~dLl~~~Sd~ 355 (420)
T PF01704_consen 291 ELQLPIHVAKKKIPYVDNGIKVIQFETAIGFAIFQFDNSFAVEVPRDRFAPVKNTSDLLLVRSDL 355 (420)
T ss_dssp TCCS-EEEEEEESSEECTEEEEEEEECGGGGGGGGCTSEEEEEE-GGG--B-SSHHHHHHHHSTT
T ss_pred cccCccEEcchhcccccCCccEEeehhhhhchHhhccCcEEEEEcHHHcCCccccCcceeeccce
Confidence 0 11211111111111223333333 5799999999999776543
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.7e-06 Score=64.86 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=60.3
Q ss_pred cchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeC
Q 046608 31 KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNS 110 (256)
Q Consensus 31 ~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~ 110 (256)
+|||+|+++.+...++++++++++. +.+.++... .++.++. +.. .|.+.++..+++.+..+. +.++++.|
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~----~~v~~i~--~~~-~G~~~si~~al~~~~~~~-~~vlv~~~ 99 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN----LGAPVLR--DPG-PGLNNALNAALAEAREPG-GAVLILMA 99 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh----cCCEEEe--cCC-CCHHHHHHHHHHHhhccC-CeEEEEeC
Confidence 5899999999999877888888863 344444332 2565543 332 388999999998875431 27999999
Q ss_pred Ceec--ccchHHHHHHHH
Q 046608 111 DVIS--EYPLKQMIEFHR 126 (256)
Q Consensus 111 D~~~--~~~~~~~~~~~~ 126 (256)
|+.+ ...++++++.+.
T Consensus 100 D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 100 DLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCHHHHHHHHHhcc
Confidence 9943 345788877553
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.6e-05 Score=67.81 Aligned_cols=180 Identities=22% Similarity=0.272 Sum_probs=111.7
Q ss_pred EEEEeCCCCCccccCCCCCCCcccee---CCcchHHHHHHHHHHc--------------CC-CEEEEEccCC-hHHHHHH
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAV--------------GV-TEVVLAINYQ-PEVMLNF 63 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i---~g~pli~~~l~~l~~~--------------~i-~~i~vv~~~~-~~~i~~~ 63 (256)
+|+||||.||||+- ..||.+++| .++++++...+++... +. -..+|.++.. .+.+.++
T Consensus 119 vvlLAGGqGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~f 195 (493)
T PLN02435 119 VVLLSGGQGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKF 195 (493)
T ss_pred EEEeCCCcccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHH
Confidence 67789999999988 789999988 5899999888876331 11 1346667655 6778888
Q ss_pred HHhhhhccCc---EEEeecc---------------------CCcCCCcHHHHH-----HHhhhcCCCCCcEEEEeCCeec
Q 046608 64 LKEFEKKLEI---KITCSQE---------------------TEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVIS 114 (256)
Q Consensus 64 ~~~~~~~~~~---~v~~~~~---------------------~~~~g~~~s~~~-----~~~~i~~~~~~~~lv~~~D~~~ 114 (256)
+++. ..+|. .+.+..| +.+.|+++-+.. .++.+...+-+++.+...|.+.
T Consensus 196 f~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L 274 (493)
T PLN02435 196 FESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNAL 274 (493)
T ss_pred HHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEeccccc
Confidence 8763 22222 2333222 245566543321 2344444444488999999954
Q ss_pred ccch-HHHHHHHHhcCCceEEEEEecCCC-cCceeEEE-cCCCC--eEeEEeecCC------CC-CC----CeEEEEEEE
Q 046608 115 EYPL-KQMIEFHRGHGGEASIMVTKVDEP-SKYGVVVM-EETMG--KVEKFVEKPK------NF-VG----NKINAGIYL 178 (256)
Q Consensus 115 ~~~~-~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~-~~~~~--~v~~~~ek~~------~~-~~----~~~~~Giy~ 178 (256)
-... -.++.....++.++.+-+++..++ ..-|.+.. +.+ | .|.++.|-+. +. .+ ...+++.++
T Consensus 275 ~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~-g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~ 353 (493)
T PLN02435 275 VRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKG-GPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHM 353 (493)
T ss_pred ccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCC-CCEEEEEeccCCHHHHhccCccccccccchhhHHHhh
Confidence 3222 355667777888888876655444 33465543 233 3 4667766432 11 12 356788899
Q ss_pred eCHhhHHhc
Q 046608 179 LNPSVLDRI 187 (256)
Q Consensus 179 ~~~~~~~~l 187 (256)
|+-++++.+
T Consensus 354 fs~~fL~~~ 362 (493)
T PLN02435 354 FTLDFLNQV 362 (493)
T ss_pred ccHHHHHHH
Confidence 999998876
|
|
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.5e-05 Score=65.41 Aligned_cols=181 Identities=23% Similarity=0.255 Sum_probs=111.5
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeC-CcchHHHHHHHHHHc----CC-CEEEEEccCChHHHHHHHHh--hhhccCc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFA-NKPMILHQIEALKAV----GV-TEVVLAINYQPEVMLNFLKE--FEKKLEI 73 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~-g~pli~~~l~~l~~~----~i-~~i~vv~~~~~~~i~~~~~~--~~~~~~~ 73 (256)
.+|+||||+|+||+. ..||.+++|. |+++++.+.++++.+ ++ -..++.++.+.++...++.. |..--..
T Consensus 107 Avl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~~~~k~ 183 (472)
T COG4284 107 AVLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYFGLDKE 183 (472)
T ss_pred EEEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhcCCCHH
Confidence 478899999999998 7899999997 999999998887655 32 24556666666566655543 2110011
Q ss_pred EEEeec-----------------------cCCcCCCcH---HHHH--HHhhhcCCCCCcEEEEeCCeecccch-HHHHHH
Q 046608 74 KITCSQ-----------------------ETEPLGTAG---PLAL--ARDKLIDDSGEPFFVLNSDVISEYPL-KQMIEF 124 (256)
Q Consensus 74 ~v~~~~-----------------------~~~~~g~~~---s~~~--~~~~i~~~~~~~~lv~~~D~~~~~~~-~~~~~~ 124 (256)
++.+.. .+-+.|+++ ++.. ..+.+...+-+.+.|.+.|. ....+ ..++.+
T Consensus 184 ~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDN-L~~~vD~~~lg~ 262 (472)
T COG4284 184 DIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDN-LGATVDLKFLGF 262 (472)
T ss_pred HeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccc-cccccCHHHHHH
Confidence 111111 123445543 3332 33334343344899999999 33233 356677
Q ss_pred HHhcCCceEEEEEecCCC-cCceeEE-EcCCCCeEeEEeecCCCC------CC----CeEE-EEEEEeCHhhHHhc
Q 046608 125 HRGHGGEASIMVTKVDEP-SKYGVVV-MEETMGKVEKFVEKPKNF------VG----NKIN-AGIYLLNPSVLDRI 187 (256)
Q Consensus 125 ~~~~~~~~~i~~~~~~~~-~~~~~v~-~~~~~~~v~~~~ek~~~~------~~----~~~~-~Giy~~~~~~~~~l 187 (256)
+..++.+.++=++....+ ..-|.+. .++. -+|.++.+-|... .+ ...+ .++++++-+++...
T Consensus 263 ~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~~g~-~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~~ 337 (472)
T COG4284 263 MAETNYEYLMETTDKTKADEKVGILVTYDGK-LRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFLKEA 337 (472)
T ss_pred HHhcCcceeEEEeecccccccceEEEEeCCc-eEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHHHhh
Confidence 778888888877664433 4556655 6655 6788888877631 11 1333 67777777766643
|
|
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.1e-05 Score=62.84 Aligned_cols=182 Identities=12% Similarity=0.090 Sum_probs=107.4
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee---CCcchHHHHHHHHHHcC---------CCEEEEEccCC-hHHHHHHHHhhh
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAVG---------VTEVVLAINYQ-PEVMLNFLKEFE 68 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i---~g~pli~~~l~~l~~~~---------i~~i~vv~~~~-~~~i~~~~~~~~ 68 (256)
-+|+||||.|+||+- ..||.++++ .|+++++..++++.... .-..+|.++.. ++.+.+++++..
T Consensus 2 a~vllaGG~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~ 78 (315)
T cd06424 2 VFVLVAGGLGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENN 78 (315)
T ss_pred EEEEecCCCccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCC
Confidence 368899999999987 789999999 58999999988876531 12456777655 677888887532
Q ss_pred hccC---cEEEeec------------------------cCCcCCCcHHHHHH-----HhhhcCCCCCcEEEEeCCeeccc
Q 046608 69 KKLE---IKITCSQ------------------------ETEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVISEY 116 (256)
Q Consensus 69 ~~~~---~~v~~~~------------------------~~~~~g~~~s~~~~-----~~~i~~~~~~~~lv~~~D~~~~~ 116 (256)
.+| .++.+.. .+.+.|.++-.... ++.+...+-+++.+..-|.+.-.
T Consensus 79 -yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 79 -YFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred -ccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 122 1121111 12355555433222 23343443347888888885432
Q ss_pred c-hHHHHHHHHhcCCceEEEEEecCCCcCceeEEE-c-CC-CCeE--eEEeecCC-----C-C------CC----CeEEE
Q 046608 117 P-LKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVM-E-ET-MGKV--EKFVEKPK-----N-F------VG----NKINA 174 (256)
Q Consensus 117 ~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~-~-~~-~~~v--~~~~ek~~-----~-~------~~----~~~~~ 174 (256)
. .-.++-....++.++...+.+......-|.+.. + .+ ...| .++.|-+. . . .. ...|+
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gNi 237 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGNI 237 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCee
Confidence 2 234455555677777776666433455665542 1 22 0233 56655431 0 0 11 15688
Q ss_pred EEEEeCHhhHHhc
Q 046608 175 GIYLLNPSVLDRI 187 (256)
Q Consensus 175 Giy~~~~~~~~~l 187 (256)
+.++|+-+.+...
T Consensus 238 ~~~~f~l~~~~~~ 250 (315)
T cd06424 238 NQLVFSLGPYMDE 250 (315)
T ss_pred eeEEEeHHHHHHH
Confidence 8999997776643
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00056 Score=62.23 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=91.3
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee---CCcchHHHHHHHHHHc-----------C-CCEEEEEccCC-hHHHHHHHH
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAV-----------G-VTEVVLAINYQ-PEVMLNFLK 65 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i---~g~pli~~~l~~l~~~-----------~-i~~i~vv~~~~-~~~i~~~~~ 65 (256)
-+|+||||.|+||+- ..||.++|+ .|+++++..++++... + .-..+|.++.. ++.+.++++
T Consensus 130 avllLaGGlGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~ 206 (615)
T PLN02830 130 AFVLVAGGLGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLE 206 (615)
T ss_pred EEEEecCCcccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHH
Confidence 367889999999987 779999997 4899999999887654 1 12466777655 677888888
Q ss_pred hhhhccC---cEEEeecc------------------------CCcCCCcHHHHHH-----HhhhcCCCCCcEEEEeCCee
Q 046608 66 EFEKKLE---IKITCSQE------------------------TEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVI 113 (256)
Q Consensus 66 ~~~~~~~---~~v~~~~~------------------------~~~~g~~~s~~~~-----~~~i~~~~~~~~lv~~~D~~ 113 (256)
+.. .|| ..+.+..| +.+.|.++-.... ++.+...+-+++.+...|.+
T Consensus 207 ~n~-~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~ 285 (615)
T PLN02830 207 RND-YFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNG 285 (615)
T ss_pred HCC-ccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccch
Confidence 632 222 12222111 1344444332221 23343443348999999993
Q ss_pred c-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEE
Q 046608 114 S-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVM 150 (256)
Q Consensus 114 ~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~ 150 (256)
. ....-.++.....++.++.+.+++......-|.+..
T Consensus 286 L~~~Adp~flG~~~~~~~d~~~kvv~K~~~E~vGvi~~ 323 (615)
T PLN02830 286 LVFKAIPAALGVSATKGFDMNSLAVPRKAKEAIGAIAK 323 (615)
T ss_pred hhhcccHHHhHHHHhcCCceEEEEEECCCCcccceEEE
Confidence 3 222366777777888888887776633344555543
|
|
| >COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0022 Score=48.90 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=64.2
Q ss_pred CeEEEEe---CCCCCccccCC-CCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEE
Q 046608 1 MKALILV---GGFGTRLRPLT-LSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKIT 76 (256)
Q Consensus 1 m~aiIla---aG~g~Rl~~~~-~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~ 76 (256)
|++||+- ++.-||+.|.- .+.-|.+. .-||-.++..+... +.+|.|++... .+..... ..++.
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~-~~~i~Vvtpde--~~~~~a~------~~~vl 67 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV-LGEITVVTPDE--EVLVPAT------KLEVL 67 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh-cCCceEEcCCh--Hhhhhcc------cceee
Confidence 7888884 46778887742 12222222 14888888888876 68888888432 2221111 12232
Q ss_pred eeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHH
Q 046608 77 CSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHR 126 (256)
Q Consensus 77 ~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~ 126 (256)
.+ .+...++..+++.+...+ .++|+++|+ +.++++.++++...
T Consensus 68 --~d---~dLN~Ai~aa~~~~~~p~--~v~vvmaDLPLl~~~~i~~~~~~~~ 112 (210)
T COG1920 68 --AD---PDLNTAINAALDEIPLPS--EVIVVMADLPLLSPEHIERALSAAK 112 (210)
T ss_pred --ec---cchHHHHHHHHhhCCCCc--ceEEEecccccCCHHHHHHHHHhcC
Confidence 11 124467778888776532 599999999 34556888877533
|
|
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0041 Score=46.39 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=70.6
Q ss_pred cchHHHHHHHHHHc--CCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 31 KPMILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 31 ~pli~~~l~~l~~~--~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
...|..+|+.+.+. ...+|+|+-+...+...+.+.++.. .+..+.+....+..|.+.+...+++....+ +++++
T Consensus 10 ~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~---~i~~l 85 (169)
T PF00535_consen 10 AEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAKGE---YILFL 85 (169)
T ss_dssp TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH--SS---EEEEE
T ss_pred HHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-ccccccccccccccccccccccccccccee---EEEEe
Confidence 36788888888776 3567877776555555666665543 123344444444558889999999999887 89999
Q ss_pred eCCeecccc-hHHHHHHHHhcCCceEEEEEe
Q 046608 109 NSDVISEYP-LKQMIEFHRGHGGEASIMVTK 138 (256)
Q Consensus 109 ~~D~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 138 (256)
.+|.....+ +.++++.+.+++.+.++....
T Consensus 86 d~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 86 DDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp ETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 999987766 888999888877766554443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0072 Score=44.03 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 31 KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 31 ~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
.+++.+.++.+.... ..+++++.+...+...+.+.+.... ...+.........|.+.++..++...+.+ .++++
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~d---~v~~~ 84 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAARGE---YILFL 84 (156)
T ss_pred HHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHhcCC---EEEEE
Confidence 589999999999987 7788888887777777666654322 12233334556678888898898888655 89999
Q ss_pred eCCeecccc-hHHHHHH
Q 046608 109 NSDVISEYP-LKQMIEF 124 (256)
Q Consensus 109 ~~D~~~~~~-~~~~~~~ 124 (256)
.+|..+..+ +..++..
T Consensus 85 d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 85 DADDLLLPDWLERLVAE 101 (156)
T ss_pred CCCCccCccHHHHHHHH
Confidence 999988766 4554343
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0018 Score=51.30 Aligned_cols=107 Identities=23% Similarity=0.294 Sum_probs=49.3
Q ss_pred CeEEEEeCCC---CCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEe
Q 046608 1 MKALILVGGF---GTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITC 77 (256)
Q Consensus 1 m~aiIlaaG~---g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~ 77 (256)
|++||+--.. =|||.+.-. -.--.=.-+-|+..++..+.. ++ +++|+... .+.+... ...++.++.
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L~---~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d~--~v~~~a~---~~~g~~vl~ 69 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVLS---PEEREALALAMLRDVLAALRA--VD-VVVVSRDP--EVAALAR---ARLGAEVLP 69 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS----HHHHHHHHHHHHHHHHHHHHH---S-EEEEES----S-TTTTT------SSEEEE
T ss_pred CeEEEEcCCCCccccccCccCC---HHHHHHHHHHHHHHHHHHHHh--cC-eEEeccch--hhhhhhh---hccCCeEec
Confidence 8899986543 377765210 000000112588999999987 56 77766422 2221111 133677653
Q ss_pred eccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHH
Q 046608 78 SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEF 124 (256)
Q Consensus 78 ~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~ 124 (256)
- . ..|.-.++..+....+.. +++++++|+ +...++..++..
T Consensus 70 d--~-~~gLN~Al~~a~~~~~~~---~vlvl~aDLPll~~~dl~~~l~~ 112 (217)
T PF01983_consen 70 D--P-GRGLNAALNAALAAAGDD---PVLVLPADLPLLTPEDLDALLAA 112 (217)
T ss_dssp ------S-HHHHHHHHHH-H--S----EEEE-S--TT--HHHHHHHCT-
T ss_pred C--C-CCCHHHHHHHHHhccCCC---ceEEeecCCccCCHHHHHHHHhc
Confidence 2 2 456667777774444443 799999999 445668888775
|
One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B. |
| >KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.022 Score=43.50 Aligned_cols=113 Identities=16% Similarity=0.223 Sum_probs=74.9
Q ss_pred CcchHHHHHHHHHH-cCC-CEEEEEccCCh---HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCc
Q 046608 30 NKPMILHQIEALKA-VGV-TEVVLAINYQP---EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEP 104 (256)
Q Consensus 30 g~pli~~~l~~l~~-~~i-~~i~vv~~~~~---~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~ 104 (256)
|.|++-|++..... .+. -++++|-.... ..+.+.+++.+. .-++...+.....|.+.|...++.+...+ .
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg--~d~i~l~pR~~klGLgtAy~hgl~~a~g~---f 91 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYG--EDNILLKPRTKKLGLGTAYIHGLKHATGD---F 91 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhC--CCcEEEEeccCcccchHHHHhhhhhccCC---e
Confidence 44677888776554 344 45666653332 344455544322 22445556778889999999999999886 7
Q ss_pred EEEEeCCeecccc-hHHHHHHHHhcCCceEEEEEecCCCcCcee
Q 046608 105 FFVLNSDVISEYP-LKQMIEFHRGHGGEASIMVTKVDEPSKYGV 147 (256)
Q Consensus 105 ~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 147 (256)
++++++|.-.++. +.++++...+++.|.+..+.-..+..-+||
T Consensus 92 iviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRYa~~ggV~gW 135 (238)
T KOG2978|consen 92 IVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRYAGGGGVYGW 135 (238)
T ss_pred EEEEeCccCCCchhHHHHHHHhhccCcceeeeeeEcCCCceecc
Confidence 8899999865544 788998888888787776655555444543
|
|
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.023 Score=44.68 Aligned_cols=102 Identities=12% Similarity=0.109 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHc------CCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcE
Q 046608 32 PMILHQIEALKAV------GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPF 105 (256)
Q Consensus 32 pli~~~l~~l~~~------~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~ 105 (256)
..|...|+.+.+. ..-+|+|+-+...+...+.++++....+..+.+.......|.+.++..++.....+ .+
T Consensus 10 ~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~gd---~i 86 (211)
T cd04188 10 KRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAARGD---YI 86 (211)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhcCC---EE
Confidence 4555556555443 23467777655555555556555433332223334444568889999999988776 89
Q ss_pred EEEeCCeecccc-hHHHHHHHHhcCCceEEEE
Q 046608 106 FVLNSDVISEYP-LKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 106 lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~ 136 (256)
+++++|..++.+ +.++++.....+.++++..
T Consensus 87 ~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 87 LFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 999999977655 7888887556666655543
|
UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. |
| >cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.037 Score=44.62 Aligned_cols=102 Identities=10% Similarity=0.106 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHcCC----CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEE
Q 046608 32 PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (256)
Q Consensus 32 pli~~~l~~l~~~~i----~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv 107 (256)
-.|..+|+.+..... -+|+||.....+...+.++++......++......+..|.+.++-.++.....+ .++.
T Consensus 14 ~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~gd---~i~~ 90 (241)
T cd06427 14 EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFARGE---YVVI 90 (241)
T ss_pred HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhcCCC---EEEE
Confidence 467788888876532 256666655555666666654321234455444444567788888888887665 8999
Q ss_pred EeCCeecccc-hHHHHHHHHhcCCceEEEE
Q 046608 108 LNSDVISEYP-LKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 108 ~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~ 136 (256)
+.+|...+++ +.++++.+.+.+.+..++.
T Consensus 91 ~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 91 YDAEDAPDPDQLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred EcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 9999987766 7788887765445554443
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot |
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.063 Score=39.97 Aligned_cols=95 Identities=24% Similarity=0.274 Sum_probs=62.6
Q ss_pred cchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 31 KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 31 ~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
...|..+|+.+.+.. ..+++|+-....+...+.+..+.......+.+....+..|.+.+.-.+++..+.+ .++++
T Consensus 9 ~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~~---~i~~~ 85 (180)
T cd06423 9 EAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKGD---IVVVL 85 (180)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCCC---EEEEE
Confidence 357888888887764 4577777665555555555554332222233344556678888888898888665 89999
Q ss_pred eCCeecccc-hHHHHHHHHhc
Q 046608 109 NSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 109 ~~D~~~~~~-~~~~~~~~~~~ 128 (256)
.+|.....+ +.+++..+.+.
T Consensus 86 D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 86 DADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred CCCCCcChHHHHHHHHHhccC
Confidence 999977665 66774554443
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the |
| >cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.088 Score=40.84 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=64.1
Q ss_pred ceeCCc---chHHHHHHHHHHcC--CCEEEEEccCC-hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcC
Q 046608 26 VDFANK---PMILHQIEALKAVG--VTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 26 l~i~g~---pli~~~l~~l~~~~--i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~ 99 (256)
+|.-+. ..|..+|+.+.... ..+++||.... .+...+.+..+..+.++++. ......|.+.+.-.++...+.
T Consensus 4 ip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i--~~~~n~G~~~a~N~g~~~a~g 81 (201)
T cd04195 4 MSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVV--PLEKNRGLGKALNEGLKHCTY 81 (201)
T ss_pred EEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEE--EcCccccHHHHHHHHHHhcCC
Confidence 455443 27888898887764 35666654433 55566666665544444443 333446888888888887766
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHHHhc
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~ 128 (256)
+ .++++.+|.+...+ +..+++.+.++
T Consensus 82 d---~i~~lD~Dd~~~~~~l~~~~~~~~~~ 108 (201)
T cd04195 82 D---WVARMDTDDISLPDRFEKQLDFIEKN 108 (201)
T ss_pred C---EEEEeCCccccCcHHHHHHHHHHHhC
Confidence 5 89999999977665 77888876544
|
AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.19 Score=40.49 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=66.4
Q ss_pred cceeC-CcchHHHHHHHHHHcCC----CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcC
Q 046608 25 LVDFA-NKPMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 25 ll~i~-g~pli~~~l~~l~~~~i----~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~ 99 (256)
++|.. ....|...|+.+..... -+++|+.....+...+.+.++... ++.++ ......|.+.++..+.+....
T Consensus 34 vip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~v~~i--~~~~~~g~~~a~n~gi~~a~~ 110 (251)
T cd06439 34 IIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK-GVKLL--RFPERRGKAAALNRALALATG 110 (251)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC-cEEEE--EcCCCCChHHHHHHHHHHcCC
Confidence 44443 44577888888766532 267777765555666666655432 34443 344556788888888888876
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHHHhcCCc
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGE 131 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~ 131 (256)
+ .++++.+|.+...+ +.++++.....+.+
T Consensus 111 d---~i~~lD~D~~~~~~~l~~l~~~~~~~~~~ 140 (251)
T cd06439 111 E---IVVFTDANALLDPDALRLLVRHFADPSVG 140 (251)
T ss_pred C---EEEEEccccCcCHHHHHHHHHHhcCCCcc
Confidence 5 89999999977766 78888876544433
|
This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. |
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.16 Score=37.70 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=63.3
Q ss_pred CCcchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEE
Q 046608 29 ANKPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~l 106 (256)
+....+..+++.+.... ..+++|+.....+...+.+.+... .+.+ .......|.+.+...+++..+.+ .++
T Consensus 7 ~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~--~~~~--~~~~~~~g~~~a~n~~~~~~~~~---~i~ 79 (166)
T cd04186 7 NSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP--EVRL--IRNGENLGFGAGNNQGIREAKGD---YVL 79 (166)
T ss_pred CCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC--CeEE--EecCCCcChHHHhhHHHhhCCCC---EEE
Confidence 34468889999888763 457777776555555555655422 2333 34445678888888898888655 889
Q ss_pred EEeCCeecccc-hHHHHHHHHhcC
Q 046608 107 VLNSDVISEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 107 v~~~D~~~~~~-~~~~~~~~~~~~ 129 (256)
++.+|..+..+ +..+++.+....
T Consensus 80 ~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 80 LLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred EECCCcEECccHHHHHHHHHHhCC
Confidence 99999977665 777777655443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.11 Score=40.52 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=61.2
Q ss_pred cchHHHHHHHHHHcCC--CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 31 KPMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 31 ~pli~~~l~~l~~~~i--~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
...|...|+.+.+... -+|+|+-....+...+.++.+..+.+..+.+.......|.+.++..++...+.+ .++++
T Consensus 10 ~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~g~---~v~~l 86 (214)
T cd04196 10 EKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADGD---YVFFC 86 (214)
T ss_pred HHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCCCC---EEEEE
Confidence 3477888888876532 367776654444445555555443333444445555667777887787766665 89999
Q ss_pred eCCeecccc-hHHHHHHHHhcC
Q 046608 109 NSDVISEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 109 ~~D~~~~~~-~~~~~~~~~~~~ 129 (256)
.+|..+.++ +.++++......
T Consensus 87 d~Dd~~~~~~l~~~~~~~~~~~ 108 (214)
T cd04196 87 DQDDIWLPDKLERLLKAFLKDD 108 (214)
T ss_pred CCCcccChhHHHHHHHHHhcCC
Confidence 999977666 788887644443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.63 Score=38.80 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=60.9
Q ss_pred chHHHHHHHHHHcC----CCEEEEEccCChHHHHHHHHh-hhhc--cCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCc
Q 046608 32 PMILHQIEALKAVG----VTEVVLAINYQPEVMLNFLKE-FEKK--LEIKITCSQETEPLGTAGPLALARDKLIDDSGEP 104 (256)
Q Consensus 32 pli~~~l~~l~~~~----i~~i~vv~~~~~~~i~~~~~~-~~~~--~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~ 104 (256)
..|...|+.+.... ..+|+||-+...+...+.+.+ .... ..++++ ......|.+.+.-.|+.....+ .
T Consensus 12 ~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi--~~~~n~G~~~a~N~g~~~A~gd---~ 86 (299)
T cd02510 12 STLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVL--RLKKREGLIRARIAGARAATGD---V 86 (299)
T ss_pred HHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEE--EcCCCCCHHHHHHHHHHHccCC---E
Confidence 48888888887653 137888876554444444322 1111 134443 3344567777888888877765 8
Q ss_pred EEEEeCCeecccc-hHHHHHHHHhcCC
Q 046608 105 FFVLNSDVISEYP-LKQMIEFHRGHGG 130 (256)
Q Consensus 105 ~lv~~~D~~~~~~-~~~~~~~~~~~~~ 130 (256)
++++++|.....+ +.++++.+.++..
T Consensus 87 i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 87 LVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred EEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 9999999976655 8889888776654
|
UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. |
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.15 Score=38.81 Aligned_cols=101 Identities=13% Similarity=0.158 Sum_probs=65.7
Q ss_pred chHHHHHHHHHHc----CCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEE
Q 046608 32 PMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (256)
Q Consensus 32 pli~~~l~~l~~~----~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv 107 (256)
..|..+|+.+.+. ...+|+|+-+...+...+.+..+..+.. .+.+....+..|.+.+.-.+++....+ .+++
T Consensus 10 ~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a~gd---~i~~ 85 (185)
T cd04179 10 ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAARGD---IVVT 85 (185)
T ss_pred hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHhcCC---EEEE
Confidence 3566677766665 2567777765555555555555433322 223334455668888998998888776 8999
Q ss_pred EeCCeecccc-hHHHHHHHHhcCCceEEEE
Q 046608 108 LNSDVISEYP-LKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 108 ~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~ 136 (256)
+.+|....++ +.++++.....+.+.++..
T Consensus 86 lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 86 MDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred EeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 9999966655 7888887566666555444
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
| >cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.12 Score=39.47 Aligned_cols=83 Identities=14% Similarity=0.243 Sum_probs=53.3
Q ss_pred CEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHH
Q 046608 47 TEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEF 124 (256)
Q Consensus 47 ~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~ 124 (256)
-+|+|+-+...+...+.++.+..+. ++.++ ......|.+.++..++.....+ .++++.+|...+.+ +.++++.
T Consensus 30 ~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i--~~~~n~G~~~a~n~g~~~a~~d---~i~~~D~D~~~~~~~l~~l~~~ 104 (181)
T cd04187 30 YEIIFVDDGSTDRTLEILRELAARDPRVKVI--RLSRNFGQQAALLAGLDHARGD---AVITMDADLQDPPELIPEMLAK 104 (181)
T ss_pred eEEEEEeCCCCccHHHHHHHHHhhCCCEEEE--EecCCCCcHHHHHHHHHhcCCC---EEEEEeCCCCCCHHHHHHHHHH
Confidence 4677777655555555555543332 23333 3344568888888888888775 89999999977655 7788776
Q ss_pred HHhcCCceEEE
Q 046608 125 HRGHGGEASIM 135 (256)
Q Consensus 125 ~~~~~~~~~i~ 135 (256)
...+.++++.
T Consensus 105 -~~~~~~~v~g 114 (181)
T cd04187 105 -WEEGYDVVYG 114 (181)
T ss_pred -HhCCCcEEEE
Confidence 3444554443
|
A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. |
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.15 Score=40.28 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHcC---CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 32 PMILHQIEALKAVG---VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 32 pli~~~l~~l~~~~---i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
..|..+|+.+.+.. .-+|+||-....+...+.++++..... .+.+.......|.+.++-.++.....+ .++++
T Consensus 10 ~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~~a~gd---~i~~l 85 (224)
T cd06442 10 ENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFKAARGD---VIVVM 85 (224)
T ss_pred hhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCC-ceEEEecCCCCChHHHHHHHHHHcCCC---EEEEE
Confidence 46777777776542 346777765444545555555433222 223333455668888888888888775 89999
Q ss_pred eCCeecccc-hHHHHHHHHhcCCceEEE
Q 046608 109 NSDVISEYP-LKQMIEFHRGHGGEASIM 135 (256)
Q Consensus 109 ~~D~~~~~~-~~~~~~~~~~~~~~~~i~ 135 (256)
++|.....+ +..+++.....+.+.+..
T Consensus 86 D~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 86 DADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 999976655 788888766666655443
|
Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, |
| >PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.12 Score=43.81 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=52.8
Q ss_pred EEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHHHH
Q 046608 48 EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 48 ~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~ 126 (256)
+|++|-....+...+.+++...+.+.++.........|.+.++..+++....+ .++++++|...+++ +.++++...
T Consensus 40 EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A~gd---~vv~~DaD~q~~p~~i~~l~~~~~ 116 (325)
T PRK10714 40 EILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVTGD---LIITLDADLQNPPEEIPRLVAKAD 116 (325)
T ss_pred EEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhCCCC---EEEEECCCCCCCHHHHHHHHHHHH
Confidence 67776654444444445443322233443333344568888999998888765 89999999977654 888888765
Q ss_pred hcCCceE
Q 046608 127 GHGGEAS 133 (256)
Q Consensus 127 ~~~~~~~ 133 (256)
.+.|++
T Consensus 117 -~~~DvV 122 (325)
T PRK10714 117 -EGYDVV 122 (325)
T ss_pred -hhCCEE
Confidence 445654
|
|
| >cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.31 Score=38.68 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=64.0
Q ss_pred ceeCCc--chHHHHHHHHHHcCC-C---EEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcC
Q 046608 26 VDFANK--PMILHQIEALKAVGV-T---EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 26 l~i~g~--pli~~~l~~l~~~~i-~---~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~ 99 (256)
+|.-|. .++...|+.+..... . +++||.....+...+.+.++.....+.+... .....+.+.++-.+++..+.
T Consensus 7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~n~~~~~a~~ 85 (234)
T cd06421 7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTR-PDNRHAKAGNLNNALAHTTG 85 (234)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEEEe-CCCCCCcHHHHHHHHHhCCC
Confidence 344443 378888998887653 2 6888776666777777776644333333322 22233345567777777765
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHHHhc
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~ 128 (256)
+ .++++.+|...+++ +.++++...++
T Consensus 86 d---~i~~lD~D~~~~~~~l~~l~~~~~~~ 112 (234)
T cd06421 86 D---FVAILDADHVPTPDFLRRTLGYFLDD 112 (234)
T ss_pred C---EEEEEccccCcCccHHHHHHHHHhcC
Confidence 5 89999999977766 77888776653
|
Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end. |
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.12 Score=41.68 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=64.2
Q ss_pred CCcchHHHHHHHHHHc----CCCEEEEEccCChHHHHHHHHhhhhccC-cEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 29 ANKPMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEKKLE-IKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~----~i~~i~vv~~~~~~~i~~~~~~~~~~~~-~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
++...|..+++.+.+. .--+|+|+-+...+...+.++++...++ ..+.........|.+.++..++.....+
T Consensus 19 ne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~g~--- 95 (243)
T PLN02726 19 NERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHASGD--- 95 (243)
T ss_pred CchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcCCC---
Confidence 3445566666655432 1236777765545555555555433222 2333333444567778888888877665
Q ss_pred cEEEEeCCeecccc-hHHHHHHHHhcCCceEEE
Q 046608 104 PFFVLNSDVISEYP-LKQMIEFHRGHGGEASIM 135 (256)
Q Consensus 104 ~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~ 135 (256)
.++++++|..++.+ +.++++...+++.+++..
T Consensus 96 ~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 96 FVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 89999999977655 788888776666666544
|
|
| >cd06438 EpsO_like EpsO protein participates in the methanolan synthesis | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.4 Score=36.72 Aligned_cols=102 Identities=13% Similarity=0.198 Sum_probs=62.6
Q ss_pred cee-CCcchHHHHHHHHHHcCC----CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhc--
Q 046608 26 VDF-ANKPMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI-- 98 (256)
Q Consensus 26 l~i-~g~pli~~~l~~l~~~~i----~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~-- 98 (256)
+|. +....|..+|+.+.+... -+|+|+.....+...+.+.+. +..+.........|.+.++-.++....
T Consensus 3 Ip~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~----~~~~~~~~~~~~~gk~~aln~g~~~a~~~ 78 (183)
T cd06438 3 IPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA----GATVLERHDPERRGKGYALDFGFRHLLNL 78 (183)
T ss_pred EeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc----CCeEEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 344 334577788888876532 357777655555566666554 333433333445577788888877764
Q ss_pred CCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCce
Q 046608 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEA 132 (256)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~ 132 (256)
..+.+.++++.+|...+++ +.++++.+.. +.++
T Consensus 79 ~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~~ 112 (183)
T cd06438 79 ADDPDAVVVFDADNLVDPNALEELNARFAA-GARV 112 (183)
T ss_pred CCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCCe
Confidence 1122389999999988766 6777776654 3443
|
The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier. |
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.17 Score=40.27 Aligned_cols=92 Identities=16% Similarity=0.154 Sum_probs=61.4
Q ss_pred CCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEE
Q 046608 29 ANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (256)
Q Consensus 29 ~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv 107 (256)
++. ..|..+|+.+.+....+|+||.....+...+.+........+.+.. .+..|...++-.++.....+ .+++
T Consensus 10 ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~---~~~~g~~~a~n~g~~~a~~d---~v~~ 83 (235)
T cd06434 10 DEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKYGGIFVIT---VPHPGKRRALAEGIRHVTTD---IVVL 83 (235)
T ss_pred CCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccCCcEEEEe---cCCCChHHHHHHHHHHhCCC---EEEE
Confidence 344 6888889988876556788877666666555543322221233332 23456777887788777665 8999
Q ss_pred EeCCeecccc-hHHHHHHHH
Q 046608 108 LNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 108 ~~~D~~~~~~-~~~~~~~~~ 126 (256)
+++|.....+ +.++++.+.
T Consensus 84 lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 84 LDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred ECCCceeChhHHHHHHHhcc
Confidence 9999988766 778887766
|
Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate. |
| >cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.2 Score=38.96 Aligned_cols=96 Identities=15% Similarity=0.206 Sum_probs=61.0
Q ss_pred CCcchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEE
Q 046608 29 ANKPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~l 106 (256)
++...|..+|+.+.+.. ..+|+|+-+...+...+.+.+.....++.++ ...+..|.+.++-.+++.....+.+.++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~i~~~--~~~~n~g~~~~~n~~~~~a~~~~~d~v~ 84 (202)
T cd04185 7 NRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDNIVYL--RLPENLGGAGGFYEGVRRAYELGYDWIW 84 (202)
T ss_pred CCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCceEEE--ECccccchhhHHHHHHHHHhccCCCEEE
Confidence 44557888888887763 2467777665556666677665443333333 3344567666666666655322233899
Q ss_pred EEeCCeecccc-hHHHHHHHH
Q 046608 107 VLNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 107 v~~~D~~~~~~-~~~~~~~~~ 126 (256)
++.+|...+.+ +.++++...
T Consensus 85 ~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 85 LMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred EeCCCCCcChHHHHHHHHHHh
Confidence 99999988766 677777655
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.29 Score=39.16 Aligned_cols=100 Identities=11% Similarity=0.141 Sum_probs=63.9
Q ss_pred CcchHHHHHHHHHHcCC----CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcE
Q 046608 30 NKPMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPF 105 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i----~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~ 105 (256)
..+.+..+++.+.+... -+++|+-+...+...+.++.+..+ ...+.+.. .+..|.+.++-.+++..+.+ .+
T Consensus 11 ~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~-~~~v~~i~-~~~~~~~~a~N~g~~~a~~d---~v 85 (249)
T cd02525 11 EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK-DPRIRLID-NPKRIQSAGLNIGIRNSRGD---II 85 (249)
T ss_pred chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhc-CCeEEEEe-CCCCCchHHHHHHHHHhCCC---EE
Confidence 34567888888876543 367777766566666666655433 12233332 23446667788888877665 89
Q ss_pred EEEeCCeecccc-hHHHHHHHHhcCCceEE
Q 046608 106 FVLNSDVISEYP-LKQMIEFHRGHGGEASI 134 (256)
Q Consensus 106 lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i 134 (256)
+++++|...+++ +.++++...+.+.+++.
T Consensus 86 ~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 115 (249)
T cd02525 86 IRVDAHAVYPKDYILELVEALKRTGADNVG 115 (249)
T ss_pred EEECCCccCCHHHHHHHHHHHhcCCCCEEe
Confidence 999999977665 78888766666554443
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.0045 Score=49.81 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=42.1
Q ss_pred hhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHHhhhcc---------------cCCcccccCceeccCC
Q 046608 196 KEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK---------------NSSSKLATGSNIIGNV 255 (256)
Q Consensus 196 ~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~~~~~~---------------~~~~~~~~~~~~~g~~ 255 (256)
.+.++.+++.+ .+.++|+|.|+ ++|++|++.++..+.. .....+.+++.|.|+|
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v 99 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQV 99 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCe
Confidence 57777777665 77788999999 9999999999976431 2345788888888876
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.47 Score=36.76 Aligned_cols=94 Identities=13% Similarity=0.193 Sum_probs=53.1
Q ss_pred CcchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCC---cHHHHHHHhhhcCCCCC
Q 046608 30 NKPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGT---AGPLALARDKLIDDSGE 103 (256)
Q Consensus 30 g~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~---~~s~~~~~~~i~~~~~~ 103 (256)
+.+.|...|+.+.+.. .-+++||.....+...+.++++...+ ..++.+.......|. +.++..+.+..+.+
T Consensus 12 ~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~~d--- 88 (196)
T cd02520 12 VDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEARYD--- 88 (196)
T ss_pred CCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCCCC---
Confidence 4446777788776642 24677776554444444444433222 233333322323343 23445566666555
Q ss_pred cEEEEeCCeecccc-hHHHHHHHH
Q 046608 104 PFFVLNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 104 ~~lv~~~D~~~~~~-~~~~~~~~~ 126 (256)
.++++.+|...+++ +.++++...
T Consensus 89 ~i~~~D~D~~~~~~~l~~l~~~~~ 112 (196)
T cd02520 89 ILVISDSDISVPPDYLRRMVAPLM 112 (196)
T ss_pred EEEEECCCceEChhHHHHHHHHhh
Confidence 89999999977665 777777643
|
UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment. |
| >cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.29 Score=37.53 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=59.9
Q ss_pred CCcchHHHHHHHHHHcCCC--EEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEE
Q 046608 29 ANKPMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i~--~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~l 106 (256)
++...|..+|+.+.+.... +|+||-+...+...+.++++... +.. ....+..|.+.+.-.+++....+ .++
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~--~~~--~~~~~~~g~~~a~n~~~~~a~~~---~v~ 80 (202)
T cd06433 8 NQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK--ITY--WISEPDKGIYDAMNKGIALATGD---IIG 80 (202)
T ss_pred chHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh--cEE--EEecCCcCHHHHHHHHHHHcCCC---EEE
Confidence 3345788888888766433 67777554455566666655332 112 22334567788888888887765 899
Q ss_pred EEeCCeecccc-hHHHHHHHHhc
Q 046608 107 VLNSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 107 v~~~D~~~~~~-~~~~~~~~~~~ 128 (256)
++.+|.....+ +.+++......
T Consensus 81 ~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 81 FLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred EeCCCcccCchHHHHHHHHHHhC
Confidence 99999966544 77777444433
|
Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.49 Score=37.68 Aligned_cols=100 Identities=21% Similarity=0.281 Sum_probs=57.9
Q ss_pred ceeCCc-c-hHHHHHHHHHHcC--CCEEEEEccCChH-HHHHHHHhhhhccCcEEEeeccCCcCC-CcHHHHHHHhhhcC
Q 046608 26 VDFANK-P-MILHQIEALKAVG--VTEVVLAINYQPE-VMLNFLKEFEKKLEIKITCSQETEPLG-TAGPLALARDKLID 99 (256)
Q Consensus 26 l~i~g~-p-li~~~l~~l~~~~--i~~i~vv~~~~~~-~i~~~~~~~~~~~~~~v~~~~~~~~~g-~~~s~~~~~~~i~~ 99 (256)
+|.-|. + +|...++.+.... .-+++||-+...+ ...+.++.+..+.+.++.+....+..| .+.++-.+++....
T Consensus 4 ip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~ 83 (236)
T cd06435 4 VPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAP 83 (236)
T ss_pred EeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCC
Confidence 455444 3 7889999988764 2467776644332 222222222222222333333233345 36778888777653
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHHH
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~ 126 (256)
. .+.++++++|...+++ +.+++..+.
T Consensus 84 ~-~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 84 D-AEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred C-CCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 2 1289999999977766 788887764
|
NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response. |
| >TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.41 Score=41.49 Aligned_cols=102 Identities=11% Similarity=0.181 Sum_probs=57.3
Q ss_pred ccee-CCcchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCC---cHHHHHHHhhh
Q 046608 25 LVDF-ANKPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGT---AGPLALARDKL 97 (256)
Q Consensus 25 ll~i-~g~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~---~~s~~~~~~~i 97 (256)
++|. ++.+.|...|+.+.... --+|+++.....+...+.+++...++ +.++..+...+..|. ..++..+.+..
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a 125 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHA 125 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhc
Confidence 4455 45678889999887764 24677765444333333333332221 233332333333333 23444455555
Q ss_pred cCCCCCcEEEEeCCeecccc-hHHHHHHHHhcC
Q 046608 98 IDDSGEPFFVLNSDVISEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 98 ~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~ 129 (256)
+.+ .++++++|...+++ ++++++.+.+.+
T Consensus 126 ~ge---~i~~~DaD~~~~p~~L~~lv~~~~~~~ 155 (373)
T TIGR03472 126 RHD---ILVIADSDISVGPDYLRQVVAPLADPD 155 (373)
T ss_pred cCC---EEEEECCCCCcChhHHHHHHHHhcCCC
Confidence 544 89999999977766 777777665433
|
This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano |
| >PRK11204 N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.46 Score=41.74 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=62.4
Q ss_pred CCcchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcE
Q 046608 29 ANKPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLIDDSGEPF 105 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~ 105 (256)
++...+..+++.+.+.. .-+|+|+.....+...+.+++...+. ++++ ....+..|-+.++-.+++..+.+ .+
T Consensus 64 ne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~--i~~~~n~Gka~aln~g~~~a~~d---~i 138 (420)
T PRK11204 64 NEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRV--IHLAENQGKANALNTGAAAARSE---YL 138 (420)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEE--EEcCCCCCHHHHHHHHHHHcCCC---EE
Confidence 34567888888887654 23677776554555555555443322 2333 33344567788888888877665 89
Q ss_pred EEEeCCeecccc-hHHHHHHHHhc
Q 046608 106 FVLNSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 106 lv~~~D~~~~~~-~~~~~~~~~~~ 128 (256)
+++++|.+.+.+ +.++++.+.+.
T Consensus 139 ~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 139 VCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred EEECCCCCCChhHHHHHHHHHHhC
Confidence 999999977766 78888876544
|
|
| >PRK10073 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.52 Score=40.10 Aligned_cols=101 Identities=7% Similarity=0.054 Sum_probs=65.8
Q ss_pred CCcchHHHHHHHHHHcCC--CEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcE
Q 046608 29 ANKPMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLIDDSGEPF 105 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i--~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~ 105 (256)
+....|...|+.+..... -+|+||-....+...+.+.++..+. .++++ .+ +..|.+.+.-.+++....+ .+
T Consensus 16 N~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi--~~-~n~G~~~arN~gl~~a~g~---yi 89 (328)
T PRK10073 16 NAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLL--HQ-ANAGVSVARNTGLAVATGK---YV 89 (328)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEE--EC-CCCChHHHHHHHHHhCCCC---EE
Confidence 445688999999887642 3666665444444444455443322 34433 33 3557777888888888776 89
Q ss_pred EEEeCCeecccc-hHHHHHHHHhcCCceEEE
Q 046608 106 FVLNSDVISEYP-LKQMIEFHRGHGGEASIM 135 (256)
Q Consensus 106 lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~ 135 (256)
+++++|..+.++ +..+++...+.+.+.+++
T Consensus 90 ~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 90 AFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred EEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 999999976655 778888776666666543
|
|
| >cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.69 Score=36.92 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=62.0
Q ss_pred CCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 29 ANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
++...|...|+.+... .++|+|+-+...+...+.++.+ ++++... ...|.+.+.-.++.....+ +++++
T Consensus 10 Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~~----~~~v~~~---~~~g~~~~~n~~~~~a~~d---~vl~l 78 (229)
T cd02511 10 NEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKEY----GAKVYQR---WWDGFGAQRNFALELATND---WVLSL 78 (229)
T ss_pred CcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHHc----CCEEEEC---CCCChHHHHHHHHHhCCCC---EEEEE
Confidence 4445788888888654 3688888776666666666643 5666543 4556777777788877766 89999
Q ss_pred eCCeecccc-hHHHHHHHHhcC
Q 046608 109 NSDVISEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 109 ~~D~~~~~~-~~~~~~~~~~~~ 129 (256)
.+|....++ +.++.+.....+
T Consensus 79 DaD~~~~~~~~~~l~~~~~~~~ 100 (229)
T cd02511 79 DADERLTPELADEILALLATDD 100 (229)
T ss_pred eCCcCcCHHHHHHHHHHHhCCC
Confidence 999987766 556666555444
|
UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core. |
| >cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.59 Score=36.80 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=60.2
Q ss_pred ceeC-CcchHHHHHHHHHHcC--C--CEEEEEccCChHHHHHHHH-hhh-hccCcEEEeeccCCcCCCcHHHHHHHhhhc
Q 046608 26 VDFA-NKPMILHQIEALKAVG--V--TEVVLAINYQPEVMLNFLK-EFE-KKLEIKITCSQETEPLGTAGPLALARDKLI 98 (256)
Q Consensus 26 l~i~-g~pli~~~l~~l~~~~--i--~~i~vv~~~~~~~i~~~~~-~~~-~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~ 98 (256)
+|.. ....|..+|+.+.... . -+|+||-+...+...+.+. ... ....+.++........|...++-.++....
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~ 82 (229)
T cd04192 3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAK 82 (229)
T ss_pred EEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHhc
Confidence 3443 3356788888876653 2 3677776544444444443 111 111333332222234555667777777666
Q ss_pred CCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCce
Q 046608 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEA 132 (256)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~ 132 (256)
.+ .++++.+|.+..++ +.++++.+..++...
T Consensus 83 ~d---~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~ 114 (229)
T cd04192 83 GD---WIVTTDADCVVPSNWLLTFVAFIQKEQIGL 114 (229)
T ss_pred CC---EEEEECCCcccCHHHHHHHHHHhhcCCCcE
Confidence 65 89999999977766 788888666555443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.84 Score=40.52 Aligned_cols=96 Identities=15% Similarity=0.180 Sum_probs=63.3
Q ss_pred CCcchHHHHHHHHHHcCC--C--EEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 29 ANKPMILHQIEALKAVGV--T--EVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i--~--~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
++...|...++.+.+... + +|+|+-+...+...+.+++..... ++.+.... ...|-+.++-.|++....+
T Consensus 59 Ne~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~--~~~Gka~AlN~gl~~s~g~--- 133 (439)
T TIGR03111 59 NSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMN--SDQGKAKALNAAIYNSIGK--- 133 (439)
T ss_pred CChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeC--CCCCHHHHHHHHHHHccCC---
Confidence 455788899998877642 2 466666555555555554433222 34444332 3357788888888877665
Q ss_pred cEEEEeCCeecccc-hHHHHHHHHhcC
Q 046608 104 PFFVLNSDVISEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 104 ~~lv~~~D~~~~~~-~~~~~~~~~~~~ 129 (256)
.++++++|.+.+.+ +.++++.+.+..
T Consensus 134 ~v~~~DaD~~~~~d~L~~l~~~f~~~~ 160 (439)
T TIGR03111 134 YIIHIDSDGKLHKDAIKNMVTRFENNP 160 (439)
T ss_pred EEEEECCCCCcChHHHHHHHHHHHhCC
Confidence 89999999987766 788888766443
|
Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602). |
| >PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.65 Score=39.60 Aligned_cols=181 Identities=10% Similarity=0.030 Sum_probs=91.3
Q ss_pred CCcchHHHHHHHHHHc----------CCCEEEEEccCChHHHHHHHHhhhhcc---CcEEEeeccCCcCCCcHHHHHHHh
Q 046608 29 ANKPMILHQIEALKAV----------GVTEVVLAINYQPEVMLNFLKEFEKKL---EIKITCSQETEPLGTAGPLALARD 95 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~----------~i~~i~vv~~~~~~~i~~~~~~~~~~~---~~~v~~~~~~~~~g~~~s~~~~~~ 95 (256)
++..-|..+++.+.+. ..-+|+||-....+...+.+.++.... +..+.+.......|.+.++..++.
T Consensus 80 Ne~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~Gi~ 159 (333)
T PTZ00260 80 NEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGML 159 (333)
T ss_pred CCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 4456666666665431 124677776544444444454443221 122333333455688888888888
Q ss_pred hhcCCCCCcEEEEeCCeecccc-hHHHHHHHHh---cCCceEEEEEecCCCcCceeEEEcCC---CCeEeEEe-ecCCCC
Q 046608 96 KLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRG---HGGEASIMVTKVDEPSKYGVVVMEET---MGKVEKFV-EKPKNF 167 (256)
Q Consensus 96 ~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~v~~~~~---~~~v~~~~-ek~~~~ 167 (256)
....+ .++.+++|...+.+ +.++++.... .+.++++......... ........- ..++.... ..-...
T Consensus 160 ~a~gd---~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~-~~~~~~~~~r~~~~~~~~~l~~~~~~~ 235 (333)
T PTZ00260 160 ASRGK---YILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDS-DVVAKRKWYRNILMYGFHFIVNTICGT 235 (333)
T ss_pred HccCC---EEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccC-cccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 77665 89999999976644 6777776543 4455544432211000 000000000 00000000 000000
Q ss_pred CCCeEEEEEEEeCHhhHHhcc----cCCCCcchhhHHHHHhcC-cEEEEEe
Q 046608 168 VGNKINAGIYLLNPSVLDRIE----LKPTSIEKEVFPEIAVEN-KLFAMVL 213 (256)
Q Consensus 168 ~~~~~~~Giy~~~~~~~~~l~----~~~~~~~~~~~~~l~~~~-~v~~~~~ 213 (256)
.-.-..+|+.+|+.+.++.+- ...+.+..+++-.+...+ ++.-+++
T Consensus 236 ~i~D~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I~EvPv 286 (333)
T PTZ00260 236 NLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVPV 286 (333)
T ss_pred CcccCCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCEEEEce
Confidence 111335789999999887652 223445556665555555 5655555
|
|
| >TIGR03469 HonB hopene-associated glycosyltransferase HpnB | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.55 Score=40.84 Aligned_cols=104 Identities=10% Similarity=0.102 Sum_probs=64.3
Q ss_pred CCcchHHHHHHHHHHcCC---CEEEEEccCChHHHHHHHHhhhhcc----CcEEEeeccC--CcCCCcHHHHHHHhhhcC
Q 046608 29 ANKPMILHQIEALKAVGV---TEVVLAINYQPEVMLNFLKEFEKKL----EIKITCSQET--EPLGTAGPLALARDKLID 99 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i---~~i~vv~~~~~~~i~~~~~~~~~~~----~~~v~~~~~~--~~~g~~~s~~~~~~~i~~ 99 (256)
++...|...|+.+.+... -+|+||-+...+...+.++++..+. .++++...+. .-.|...++..+.+....
T Consensus 50 Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~ 129 (384)
T TIGR03469 50 NEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAART 129 (384)
T ss_pred CcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhc
Confidence 456789999999877532 3777777665555555555443222 2444322111 123455677777777662
Q ss_pred CC--CCcEEEEeCCeecccc-hHHHHHHHHhcCCce
Q 046608 100 DS--GEPFFVLNSDVISEYP-LKQMIEFHRGHGGEA 132 (256)
Q Consensus 100 ~~--~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~ 132 (256)
.. .|.++.+++|...+++ +.++++...+++.+.
T Consensus 130 ~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 130 LAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred cCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 11 2289999999977666 788888777666544
|
This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms. |
| >cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.93 Score=34.97 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=58.0
Q ss_pred CCc-chHHHHHHHHHHcCC--CEEEEEccCC-hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCc
Q 046608 29 ANK-PMILHQIEALKAVGV--TEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEP 104 (256)
Q Consensus 29 ~g~-pli~~~l~~l~~~~i--~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~ 104 (256)
++. ..+..+|+.+.+... -+|+|+-+.. ...+...+..+... .-.+.+.......|.+.+.-.++.....+ .
T Consensus 11 n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~a~n~g~~~a~~d---~ 86 (202)
T cd04184 11 NTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ-DPRIKVVFREENGGISAATNSALELATGE---F 86 (202)
T ss_pred cCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc-CCCEEEEEcccCCCHHHHHHHHHHhhcCC---E
Confidence 444 677888888876532 3666665433 33344444433222 11233333344567778888888877665 8
Q ss_pred EEEEeCCeecccc-hHHHHHHHH
Q 046608 105 FFVLNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 105 ~lv~~~D~~~~~~-~~~~~~~~~ 126 (256)
++++.+|....++ +.++++.+.
T Consensus 87 i~~ld~D~~~~~~~l~~~~~~~~ 109 (202)
T cd04184 87 VALLDHDDELAPHALYEVVKALN 109 (202)
T ss_pred EEEECCCCcCChHHHHHHHHHHH
Confidence 9999999977766 788888763
|
The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >PRK14583 hmsR N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.62 Score=41.39 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=62.5
Q ss_pred ccceeCC-cchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhhcC
Q 046608 24 PLVDFAN-KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 24 ~ll~i~g-~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i~~ 99 (256)
.++|.-| ...+..+++.+.+.. --+|+++.+...+...+.+.+...+. +++++.. .+..|-+.++-.++...+.
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~--~~n~Gka~AlN~gl~~a~~ 156 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHL--AHNQGKAIALRMGAAAARS 156 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEe--CCCCCHHHHHHHHHHhCCC
Confidence 3455544 456788888877653 23677776544444444444432222 3454432 3345677788888777655
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHHHhc
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~ 128 (256)
+ .++++++|.+.+.+ +.++++.+.+.
T Consensus 157 d---~iv~lDAD~~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 157 E---YLVCIDGDALLDKNAVPYLVAPLIAN 183 (444)
T ss_pred C---EEEEECCCCCcCHHHHHHHHHHHHhC
Confidence 5 89999999988776 77787766544
|
|
| >COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.75 Score=40.48 Aligned_cols=99 Identities=17% Similarity=0.291 Sum_probs=71.3
Q ss_pred CCcc-hHHHHHHHHHHcCCC--EEEEEccCChHHHHHHHHhhhhcc--CcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 29 ANKP-MILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEKKL--EIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 29 ~g~p-li~~~l~~l~~~~i~--~i~vv~~~~~~~i~~~~~~~~~~~--~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
+..+ .++.+++.+.+.... +++++.....+...+.+.+...+. .+++.. ......|.+.++..++.....+
T Consensus 64 nE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~gK~~al~~~l~~~~~d--- 139 (439)
T COG1215 64 NEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIY-PEKKNGGKAGALNNGLKRAKGD--- 139 (439)
T ss_pred CCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEe-ccccCccchHHHHHHHhhcCCC---
Confidence 4456 899999999998633 788888766777777777765544 233331 1134566788899998888765
Q ss_pred cEEEEeCCeecccc-hHHHHHHHHhcCCc
Q 046608 104 PFFVLNSDVISEYP-LKQMIEFHRGHGGE 131 (256)
Q Consensus 104 ~~lv~~~D~~~~~~-~~~~~~~~~~~~~~ 131 (256)
.++++++|++.+.+ +.+++.........
T Consensus 140 ~V~~~DaD~~~~~d~l~~~~~~f~~~~~~ 168 (439)
T COG1215 140 VVVILDADTVPEPDALRELVSPFEDPPVG 168 (439)
T ss_pred EEEEEcCCCCCChhHHHHHHhhhcCCCee
Confidence 89999999987766 78888877665543
|
|
| >cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.64 Score=37.00 Aligned_cols=92 Identities=16% Similarity=0.232 Sum_probs=53.6
Q ss_pred CCcchHHHHHHHHHHcCC----CEEEEEccCChHHH----HHHHHhhhhccCcEEEeeccCCcCC-CcHHHHHHHhhhcC
Q 046608 29 ANKPMILHQIEALKAVGV----TEVVLAINYQPEVM----LNFLKEFEKKLEIKITCSQETEPLG-TAGPLALARDKLID 99 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i----~~i~vv~~~~~~~i----~~~~~~~~~~~~~~v~~~~~~~~~g-~~~s~~~~~~~i~~ 99 (256)
+....|...|+.+.+... -+|+|+-+ ..+.. .+.+..+. ..+.++......+..| .+.++-.++...+.
T Consensus 11 Ne~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~-~~~~~i~~~~~~~~~G~k~~a~n~g~~~a~~ 88 (232)
T cd06437 11 NEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYA-AQGVNIKHVRRADRTGYKAGALAEGMKVAKG 88 (232)
T ss_pred CcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHh-hcCCceEEEECCCCCCCchHHHHHHHHhCCC
Confidence 445688888988876532 24555544 33332 23332221 1134454444444445 35677778777766
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHH
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFH 125 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~ 125 (256)
+ .++++++|...+++ +.++....
T Consensus 89 ~---~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 89 E---YVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred C---EEEEEcCCCCCChHHHHHhhhhh
Confidence 5 89999999987766 66655443
|
Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we |
| >PRK10063 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=1.8 Score=35.14 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=58.4
Q ss_pred CCcchHHHHHHHHHHc----C-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 29 ANKPMILHQIEALKAV----G-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~----~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
+....|...|+.+.+. . --+++|+-+...+...+.++++.....++++ .+. ..|.+.++-.++.....+
T Consensus 11 N~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~~i~~i--~~~-~~G~~~A~N~Gi~~a~g~--- 84 (248)
T PRK10063 11 RNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIFNLRFV--SEP-DNGIYDAMNKGIAMAQGR--- 84 (248)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccCCEEEE--ECC-CCCHHHHHHHHHHHcCCC---
Confidence 4455677777777531 2 2367777655556666667665433234443 333 448888888888887765
Q ss_pred cEEEEeCCeecccchHHHHHHHHhcC
Q 046608 104 PFFVLNSDVISEYPLKQMIEFHRGHG 129 (256)
Q Consensus 104 ~~lv~~~D~~~~~~~~~~~~~~~~~~ 129 (256)
+++.+++|.++.++..+++.....++
T Consensus 85 ~v~~ld~DD~~~~~~~~~~~~~~~~~ 110 (248)
T PRK10063 85 FALFLNSGDIFHQDAANFVRQLKMQK 110 (248)
T ss_pred EEEEEeCCcccCcCHHHHHHHHHhCC
Confidence 89999988877656444444444333
|
|
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.93 Score=37.36 Aligned_cols=98 Identities=15% Similarity=0.137 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHcCCCEEEEEccCC--hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEe
Q 046608 32 PMILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLN 109 (256)
Q Consensus 32 pli~~~l~~l~~~~i~~i~vv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~ 109 (256)
..|..+|+.+.+. ..+|+||-+.. .+.+.+.+... ..+.++ ...+..|-+.+.-.+++.....+.|.+++++
T Consensus 8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~~---~~i~~i--~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD 81 (281)
T TIGR01556 8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLRG---QKIALI--HLGDNQGIAGAQNQGLDASFRRGVQGVLLLD 81 (281)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhccC---CCeEEE--ECCCCcchHHHHHHHHHHHHHCCCCEEEEEC
Confidence 4677778777765 45777776542 22344433322 134443 3445568888888888777332333899999
Q ss_pred CCeecccc-hHHHHHHHHhcCCceEEE
Q 046608 110 SDVISEYP-LKQMIEFHRGHGGEASIM 135 (256)
Q Consensus 110 ~D~~~~~~-~~~~~~~~~~~~~~~~i~ 135 (256)
.|...+.+ +.++++.....+....++
T Consensus 82 ~D~~~~~~~l~~l~~~~~~~~~~~~~~ 108 (281)
T TIGR01556 82 QDSRPGNAFLAAQWKLLSAENGQACAL 108 (281)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 99977655 677777665543233333
|
Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids. |
| >cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase | Back alignment and domain information |
|---|
Probab=93.44 E-value=3.2 Score=32.90 Aligned_cols=90 Identities=16% Similarity=0.249 Sum_probs=55.6
Q ss_pred eCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEE
Q 046608 28 FANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (256)
Q Consensus 28 i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~l 106 (256)
+++. ..|..+|+.+.+. ..+|+|+-+...+......+. ...++.++ ......|-+.+.-.+++.....+.+.++
T Consensus 6 yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~--~~~~i~~i--~~~~n~G~~~a~N~g~~~a~~~~~d~v~ 80 (237)
T cd02526 6 YNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL--NSEKIELI--HLGENLGIAKALNIGIKAALENGADYVL 80 (237)
T ss_pred ecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc--cCCcEEEE--ECCCceehHHhhhHHHHHHHhCCCCEEE
Confidence 3555 7888889888876 567777654433332222221 11134443 3344567778888888877542223899
Q ss_pred EEeCCeecccc-hHHHH
Q 046608 107 VLNSDVISEYP-LKQMI 122 (256)
Q Consensus 107 v~~~D~~~~~~-~~~~~ 122 (256)
++++|...+++ +.+++
T Consensus 81 ~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 81 LFDQDSVPPPDMVEKLL 97 (237)
T ss_pred EECCCCCcCHhHHHHHH
Confidence 99999987766 67764
|
Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen. |
| >cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.4 Score=33.35 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=59.6
Q ss_pred CCcchHHHHHHHHHHcCC---CEEEEEccCChHHHHHHHHhhhhc---cCcEEEeecc--CCcCCCcHHHHHHHhhhcCC
Q 046608 29 ANKPMILHQIEALKAVGV---TEVVLAINYQPEVMLNFLKEFEKK---LEIKITCSQE--TEPLGTAGPLALARDKLIDD 100 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i---~~i~vv~~~~~~~i~~~~~~~~~~---~~~~v~~~~~--~~~~g~~~s~~~~~~~i~~~ 100 (256)
++...|...|+.+..... -+|+||-....+...+.+.++..+ .++.+..... ....|.+.+.-.+++..+.+
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a~gd 86 (219)
T cd06913 7 NGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSSGR 86 (219)
T ss_pred CcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhcCCC
Confidence 445688888888876532 377777655444444444443222 1344433222 23356666777777766665
Q ss_pred CCCcEEEEeCCeecccc-hHHHHHHHHhcCC
Q 046608 101 SGEPFFVLNSDVISEYP-LKQMIEFHRGHGG 130 (256)
Q Consensus 101 ~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~ 130 (256)
.++.+.+|.+..++ +.+++....++..
T Consensus 87 ---~i~~lD~D~~~~~~~l~~~~~~~~~~~~ 114 (219)
T cd06913 87 ---YLCFLDSDDVMMPQRIRLQYEAALQHPN 114 (219)
T ss_pred ---EEEEECCCccCChhHHHHHHHHHHhCCC
Confidence 89999999976655 7777776655543
|
This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified. |
| >cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase | Back alignment and domain information |
|---|
Probab=92.87 E-value=1.5 Score=33.15 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=55.8
Q ss_pred cchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC-CcCCCcHHHHHHHhhhcCCCCCcEEE
Q 046608 31 KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET-EPLGTAGPLALARDKLIDDSGEPFFV 107 (256)
Q Consensus 31 ~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~-~~~g~~~s~~~~~~~i~~~~~~~~lv 107 (256)
...|..+|+.+.+.. ..+++|+-....+...+.+.++....+.++....+. ...|.+.+.-.+.+....+ .+++
T Consensus 9 ~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g~---~i~~ 85 (182)
T cd06420 9 PEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAKGD---YLIF 85 (182)
T ss_pred hHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhcCC---EEEE
Confidence 346788888887652 357777765555555566655433223333322222 2234455566677766655 8999
Q ss_pred EeCCeecccc-hHHHHHHH
Q 046608 108 LNSDVISEYP-LKQMIEFH 125 (256)
Q Consensus 108 ~~~D~~~~~~-~~~~~~~~ 125 (256)
+.+|.+...+ +.++++.+
T Consensus 86 lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 86 IDGDCIPHPDFIADHIELA 104 (182)
T ss_pred EcCCcccCHHHHHHHHHHh
Confidence 9999977666 67777654
|
Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm |
| >PRK10018 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=2.7 Score=34.90 Aligned_cols=93 Identities=10% Similarity=0.099 Sum_probs=58.4
Q ss_pred CCcchHHHHHHHHHHcCC--CEEEEEccCCh--HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCc
Q 046608 29 ANKPMILHQIEALKAVGV--TEVVLAINYQP--EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEP 104 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i--~~i~vv~~~~~--~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~ 104 (256)
+....|...|+.+..... -+++||-+... +.+.+++.... ..++.+.......|.+.+.-.++.....+ .
T Consensus 15 N~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~---~~ri~~i~~~~n~G~~~a~N~gi~~a~g~---~ 88 (279)
T PRK10018 15 NRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALN---DPRITYIHNDINSGACAVRNQAIMLAQGE---Y 88 (279)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcC---CCCEEEEECCCCCCHHHHHHHHHHHcCCC---E
Confidence 455677888888776543 36666654332 33344444321 22344444445567777777788877766 8
Q ss_pred EEEEeCCeecccc-hHHHHHHHHh
Q 046608 105 FFVLNSDVISEYP-LKQMIEFHRG 127 (256)
Q Consensus 105 ~lv~~~D~~~~~~-~~~~~~~~~~ 127 (256)
++++.+|....++ +..+++....
T Consensus 89 I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 89 ITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred EEEECCCCCCCccHHHHHHHHHHh
Confidence 9999999977665 7778776654
|
|
| >KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.37 Score=42.34 Aligned_cols=62 Identities=27% Similarity=0.443 Sum_probs=41.5
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeC---CcchHHHHHHHHHHc----------CCC-EEEEEcc-CChHHHHHHHHh
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKAV----------GVT-EVVLAIN-YQPEVMLNFLKE 66 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~---g~pli~~~l~~l~~~----------~i~-~i~vv~~-~~~~~i~~~~~~ 66 (256)
.++++|||.|+|++- ..||.+.++| |+.++++..+.+... +.+ ..+|.++ ...+...++++.
T Consensus 99 a~~llaGgqgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~f~~ 175 (477)
T KOG2388|consen 99 AVVLLAGGQGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEYFES 175 (477)
T ss_pred eEEEeccCceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhHHhh
Confidence 478899999999987 7899999997 455877766544221 211 2334443 446677777763
|
|
| >PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.49 Score=37.46 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=52.2
Q ss_pred ceeCC-cchHHHHHHHHHHc--CCCEEEEEccCChHHHHHHHHhhhh---ccCcEEEeeccCC-cCCCcHHHHHHHhhhc
Q 046608 26 VDFAN-KPMILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEK---KLEIKITCSQETE-PLGTAGPLALARDKLI 98 (256)
Q Consensus 26 l~i~g-~pli~~~l~~l~~~--~i~~i~vv~~~~~~~i~~~~~~~~~---~~~~~v~~~~~~~-~~g~~~s~~~~~~~i~ 98 (256)
+|.-| .+.|...|+.+... .--+++|+.....+...+.+..+.. ..++.++...... ..+...++..++....
T Consensus 7 ip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~ 86 (228)
T PF13641_consen 7 IPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAAR 86 (228)
T ss_dssp --BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH--
T ss_pred EEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhcC
Confidence 44433 36777888877754 2346677665444333333332211 2133443222211 1234567778888777
Q ss_pred CCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCce
Q 046608 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEA 132 (256)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~ 132 (256)
.+ .++++.+|.+.+.+ +.++++.+...+..+
T Consensus 87 ~d---~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~ 118 (228)
T PF13641_consen 87 GD---YILFLDDDTVLDPDWLERLLAAFADPGVGA 118 (228)
T ss_dssp -S---EEEEE-SSEEE-CHHHHHHHHHHHBSS--E
T ss_pred CC---EEEEECCCcEECHHHHHHHHHHHHhCCCCe
Confidence 55 89999999987766 788888774444433
|
|
| >PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ] | Back alignment and domain information |
|---|
Probab=92.16 E-value=3.4 Score=34.22 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=48.1
Q ss_pred HHHHHHc---CCCEEEEEccCChHHHHHHHHhhhhccCcE-EEeec-cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe
Q 046608 38 IEALKAV---GVTEVVLAINYQPEVMLNFLKEFEKKLEIK-ITCSQ-ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV 112 (256)
Q Consensus 38 l~~l~~~---~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~-v~~~~-~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~ 112 (256)
+..+... .--+|+|+-+...+...+.+.......+.. .+... .....|.+.+.=.++...+.+ .++++++|.
T Consensus 23 l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A~~d---~l~flD~D~ 99 (281)
T PF10111_consen 23 LESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYARGD---YLIFLDADC 99 (281)
T ss_pred HHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHcCCC---EEEEEcCCe
Confidence 5656652 123555555444444434444433333333 22221 123457777777777777776 899999999
Q ss_pred ecccc-hHHHHH
Q 046608 113 ISEYP-LKQMIE 123 (256)
Q Consensus 113 ~~~~~-~~~~~~ 123 (256)
+..++ +.++++
T Consensus 100 i~~~~~i~~~~~ 111 (281)
T PF10111_consen 100 IPSPDFIEKLLN 111 (281)
T ss_pred eeCHHHHHHHHH
Confidence 88766 677777
|
|
| >PRK11498 bcsA cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=3.4 Score=39.80 Aligned_cols=103 Identities=16% Similarity=0.155 Sum_probs=64.4
Q ss_pred ceeCCcc--hHHHHHHHHHHcC-C-C--EEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcC
Q 046608 26 VDFANKP--MILHQIEALKAVG-V-T--EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 26 l~i~g~p--li~~~l~~l~~~~-i-~--~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~ 99 (256)
+|.-|.+ ++...+..+.+.. . + +|+|+-....+...+.+++. +++++... .+..+-++++-.+++..+.
T Consensus 266 IPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~----~v~yI~R~-~n~~gKAGnLN~aL~~a~G 340 (852)
T PRK11498 266 VPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEV----GVKYIARP-THEHAKAGNINNALKYAKG 340 (852)
T ss_pred EecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHC----CcEEEEeC-CCCcchHHHHHHHHHhCCC
Confidence 4445665 5777787776543 2 2 57777655566666666553 55554322 2233456777888887766
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEEEEE
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASIMVT 137 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~~ 137 (256)
+ .++++++|++...+ +++++..+.+.. +..++.+
T Consensus 341 E---yIavlDAD~ip~pdfL~~~V~~f~~dP-~VglVQt 375 (852)
T PRK11498 341 E---FVAIFDCDHVPTRSFLQMTMGWFLKDK-KLAMMQT 375 (852)
T ss_pred C---EEEEECCCCCCChHHHHHHHHHHHhCC-CeEEEEc
Confidence 5 89999999987766 567776655443 3444443
|
|
| >cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine | Back alignment and domain information |
|---|
Probab=91.24 E-value=3.7 Score=31.64 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=57.9
Q ss_pred CCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHH-hhhhccCcEEEeec-cCCcCCCcHHHHHHHhhhcCC-----
Q 046608 29 ANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLK-EFEKKLEIKITCSQ-ETEPLGTAGPLALARDKLIDD----- 100 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~-~~~~~~~~~v~~~~-~~~~~g~~~s~~~~~~~i~~~----- 100 (256)
+....|..+|+.+.+.. ..+|+|+.....+...+.++ .. ...++.++... +....|-+.++-.++..+...
T Consensus 7 Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~~~~-~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g 85 (191)
T cd06436 7 NEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVRLAI-TDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEG 85 (191)
T ss_pred ccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHhhee-cCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhccccc
Confidence 44567888888887754 23677776655555555554 11 11134443221 123457788888888776421
Q ss_pred ---CCCcEEEEeCCeecccc-hHHHHHHHH
Q 046608 101 ---SGEPFFVLNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 101 ---~~~~~lv~~~D~~~~~~-~~~~~~~~~ 126 (256)
..+.++++.+|...+++ +.++.....
T Consensus 86 ~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~ 115 (191)
T cd06436 86 ADPERVIIAVIDADGRLDPNALEAVAPYFS 115 (191)
T ss_pred cCCCccEEEEECCCCCcCHhHHHHHHHhhc
Confidence 11278999999988766 666555443
|
N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase. |
| >PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.63 E-value=3.7 Score=34.59 Aligned_cols=196 Identities=10% Similarity=0.025 Sum_probs=97.9
Q ss_pred CCcchHHHHHHHHHHc----CCCEEEEEccCChHHHHHHHHhhhhccCcEEEe----ec-cCCcCCCcHHHHHHHhhhcC
Q 046608 29 ANKPMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITC----SQ-ETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~----~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~----~~-~~~~~g~~~s~~~~~~~i~~ 99 (256)
+....|..+|+.+.+. ...+|+||-+...+...+.++++. .++.. .. .....|.+.++..++.....
T Consensus 41 Nee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~----~~v~~~~~~~~~~~~n~Gkg~A~~~g~~~a~g 116 (306)
T PRK13915 41 NEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAG----ARVVSREEILPELPPRPGKGEALWRSLAATTG 116 (306)
T ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhc----chhhcchhhhhccccCCCHHHHHHHHHHhcCC
Confidence 4446777888877653 245788877655555555565542 22111 01 12345777788778776655
Q ss_pred CCCCcEEEEeCCee-cccc-hHHHHHHHH-hcCCceEEEEEecCCCcCceeEEEcCCCCeEeEEeec-------CCCCCC
Q 046608 100 DSGEPFFVLNSDVI-SEYP-LKQMIEFHR-GHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEK-------PKNFVG 169 (256)
Q Consensus 100 ~~~~~~lv~~~D~~-~~~~-~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~ek-------~~~~~~ 169 (256)
+ .++++++|.. .+.+ +.++++.+. ..+.+.+........... +......+ +++.+..-. +....-
T Consensus 117 d---~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~-~~~~~~~~-gr~~~~~~~~l~~~~~~~l~~i 191 (306)
T PRK13915 117 D---IVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVS-GGVDATGG-GRVTELVARPLLNLLRPELAGF 191 (306)
T ss_pred C---EEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccc-cccCcCCC-CchHHHHHHHHHHHHHHhhhcc
Confidence 5 8999999995 5544 788888765 344444443322111000 00011111 333221100 000000
Q ss_pred CeEEEEEEEeCHhhHHhcccC-CCCcchhhHHHHH-hcC--cEEEEEeCceEEecCCHHHHHHHHHHH
Q 046608 170 NKINAGIYLLNPSVLDRIELK-PTSIEKEVFPEIA-VEN--KLFAMVLPGFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 170 ~~~~~Giy~~~~~~~~~l~~~-~~~~~~~~~~~l~-~~~--~v~~~~~~~~~~di~t~~d~~~a~~~~ 233 (256)
....+|.+.++.++++.+.-. .+.++.+++-.+. ..| .+.-+++...........++..--.++
T Consensus 192 ~dp~sG~~a~rr~~l~~l~~~~~yg~e~~~l~~~~~~~g~~~i~~V~l~~r~h~~~~~~~~~~m~~~i 259 (306)
T PRK13915 192 VQPLGGEYAGRRELLESLPFVPGYGVEIGLLIDTLDRLGLDAIAQVDLGVRAHRNQPLRALGRMARQI 259 (306)
T ss_pred cCcchHhHHHHHHHHHhCCCCCCCeehHHHHHHHHHHhCcCceEEEEecccccCCCCHHHHHHHHHHH
Confidence 122367788999998876422 2334445555444 223 344444433333344555555443433
|
|
| >cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function | Back alignment and domain information |
|---|
Probab=88.38 E-value=9.5 Score=29.70 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=53.6
Q ss_pred cchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 31 KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 31 ~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
.+.|...|+.+.+.. ..+|+|+-+...+...+.+++. ++.+ .. ...|.+.+.-.++.....+ .++++
T Consensus 11 ~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~~----~~~~--~~--~~~g~~~a~n~g~~~a~~~---~i~~~ 79 (221)
T cd02522 11 AENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARSA----GVVV--IS--SPKGRARQMNAGAAAARGD---WLLFL 79 (221)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhcC----CeEE--Ee--CCcCHHHHHHHHHHhccCC---EEEEE
Confidence 346778888777653 3567777655455555555541 3333 22 2345666666677776654 89999
Q ss_pred eCCeecccc-hHHHHHHHHhcC
Q 046608 109 NSDVISEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 109 ~~D~~~~~~-~~~~~~~~~~~~ 129 (256)
.+|..+..+ +.+++......+
T Consensus 80 D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 80 HADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred cCCCCCChhHHHHHHHHhhcCC
Confidence 999977655 667655544443
|
Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
Probab=88.25 E-value=6.4 Score=37.37 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=62.3
Q ss_pred cceeCCcc--hHHHHHHHHHHcC-C-C--EEEEEccCChH-------H-------HHHHHHhhhhccCcEEEeeccCCcC
Q 046608 25 LVDFANKP--MILHQIEALKAVG-V-T--EVVLAINYQPE-------V-------MLNFLKEFEKKLEIKITCSQETEPL 84 (256)
Q Consensus 25 ll~i~g~p--li~~~l~~l~~~~-i-~--~i~vv~~~~~~-------~-------i~~~~~~~~~~~~~~v~~~~~~~~~ 84 (256)
++|.-|.+ ++...++.+.+.. . + +|+|+-....+ . -.+.+++..++.++..+... .+..
T Consensus 136 iIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~-~n~~ 214 (713)
T TIGR03030 136 FIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRP-RNVH 214 (713)
T ss_pred EEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECC-CCCC
Confidence 45556665 6677888887654 2 2 56666532111 0 11233333334455554322 2233
Q ss_pred CCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEEEE
Q 046608 85 GTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 85 g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~ 136 (256)
+-++++-.+++..+.+ .++++++|++...+ +.+++..+.+.. +..++.
T Consensus 215 ~KAgnLN~al~~a~gd---~Il~lDAD~v~~pd~L~~~v~~f~~dp-~v~~Vq 263 (713)
T TIGR03030 215 AKAGNINNALKHTDGE---LILIFDADHVPTRDFLQRTVGWFVEDP-KLFLVQ 263 (713)
T ss_pred CChHHHHHHHHhcCCC---EEEEECCCCCcChhHHHHHHHHHHhCC-CEEEEe
Confidence 4567788888887765 89999999987766 677777665443 344443
|
Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils. |
| >PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2 | Back alignment and domain information |
|---|
Probab=87.56 E-value=6.7 Score=26.38 Aligned_cols=79 Identities=10% Similarity=0.077 Sum_probs=47.8
Q ss_pred cchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc-CCcCCCcHHHHHHH-hhhcCCCCCcEEEE
Q 046608 31 KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE-TEPLGTAGPLALAR-DKLIDDSGEPFFVL 108 (256)
Q Consensus 31 ~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~-~~~~g~~~s~~~~~-~~i~~~~~~~~lv~ 108 (256)
-++|...|......|+++++|+.....+...+.++++. ++.+..... ............++ .... +.++++.+
T Consensus 4 ~~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~~---~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~dWvl~~ 78 (97)
T PF13704_consen 4 ADYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRALP---GVGIIRWVDPYRDERRQRAWRNALIERAF--DADWVLFL 78 (97)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhCC---CcEEEEeCCCccchHHHHHHHHHHHHhCC--CCCEEEEE
Confidence 35788888888888999999998777777777777653 344443322 11111112222222 2222 22389999
Q ss_pred eCCeec
Q 046608 109 NSDVIS 114 (256)
Q Consensus 109 ~~D~~~ 114 (256)
.+|-++
T Consensus 79 D~DEfl 84 (97)
T PF13704_consen 79 DADEFL 84 (97)
T ss_pred eeeEEE
Confidence 999954
|
|
| >PRK14716 bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
Probab=86.10 E-value=11 Score=34.16 Aligned_cols=95 Identities=6% Similarity=0.034 Sum_probs=54.9
Q ss_pred CCcchHHHHHHHH-HHcCC--CEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhh------c
Q 046608 29 ANKPMILHQIEAL-KAVGV--TEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKL------I 98 (256)
Q Consensus 29 ~g~pli~~~l~~l-~~~~i--~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i------~ 98 (256)
++...|...|+.+ ....- -+|+|+...+.+...+.++....++ +++++......+.+-+.++-.+.+.+ .
T Consensus 76 NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~~ 155 (504)
T PRK14716 76 READVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFAFERER 155 (504)
T ss_pred CchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhhc
Confidence 4557889999875 33322 2677776555444444444332222 35544444444556677776676654 2
Q ss_pred CCCCCcEEEEeCCeecccchHHHHH
Q 046608 99 DDSGEPFFVLNSDVISEYPLKQMIE 123 (256)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~~~~~~~ 123 (256)
....|.++++++|.+.+++.-+.+.
T Consensus 156 G~~~d~vvi~DAD~~v~Pd~Lr~~~ 180 (504)
T PRK14716 156 GIRFAIIVLHDAEDVIHPLELRLYN 180 (504)
T ss_pred CCCcCEEEEEcCCCCcCccHHHHHH
Confidence 2111389999999988877444444
|
|
| >COG1216 Predicted glycosyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.70 E-value=12 Score=31.28 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=63.4
Q ss_pred ceeCCcchHHHHHHHHHHcCC-C-EEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 26 VDFANKPMILHQIEALKAVGV-T-EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 26 l~i~g~pli~~~l~~l~~~~i-~-~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
..++....+...++.+.+... . .++++.+...+...+.++... ..++.++ ...+-.|-+++.-.+.........+
T Consensus 10 v~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~-~~~v~~i--~~~~NlG~agg~n~g~~~a~~~~~~ 86 (305)
T COG1216 10 VTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF-FPNVRLI--ENGENLGFAGGFNRGIKYALAKGDD 86 (305)
T ss_pred EecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc-CCcEEEE--EcCCCccchhhhhHHHHHHhcCCCc
Confidence 334566677888888888753 3 333344444444444454421 1134444 4445567677776666666443222
Q ss_pred cEEEEeCCeecccc-hHHHHHHHHhcCCceE
Q 046608 104 PFFVLNSDVISEYP-LKQMIEFHRGHGGEAS 133 (256)
Q Consensus 104 ~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~ 133 (256)
++++++-|.+.+.+ +.++++.+.+.+..+.
T Consensus 87 ~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~ 117 (305)
T COG1216 87 YVLLLNPDTVVEPDLLEELLKAAEEDPAAGV 117 (305)
T ss_pred EEEEEcCCeeeChhHHHHHHHHHHhCCCCeE
Confidence 59999999877766 8899998887765443
|
|
| >cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan | Back alignment and domain information |
|---|
Probab=82.36 E-value=25 Score=28.64 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=36.5
Q ss_pred CcEEEeeccCCcCCCc-HHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEEEE
Q 046608 72 EIKITCSQETEPLGTA-GPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 72 ~~~v~~~~~~~~~g~~-~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~ 136 (256)
+..+.+....+..|.. ..+..++...... .+.++++++|...+.+ +.+++..+.... ...++.
T Consensus 66 ~~~v~~~~r~~~~g~Kag~l~~~~~~~~~~-~~~i~~~DaD~~~~p~~l~~~v~~~~~~~-~vg~vq 130 (254)
T cd04191 66 QGRIYYRRRRENTGRKAGNIADFCRRWGSR-YDYMVVLDADSLMSGDTIVRLVRRMEANP-RAGIIQ 130 (254)
T ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHhCCC-CCEEEEEeCCCCCCHHHHHHHHHHHHhCC-CEEEEe
Confidence 3455555555444543 4444454443222 2289999999987766 788888765433 344444
|
Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane. |
| >COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.26 E-value=8.7 Score=29.93 Aligned_cols=87 Identities=23% Similarity=0.205 Sum_probs=48.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCC-CEEEEEccCC-hHHHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGV-TEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i-~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~ 78 (256)
|+.+||+.|.||.|.- +++.+..-.+ -+|..|.+.+ .....+..++. ++.....
T Consensus 1 ~ki~VlaSG~GSNlqa--------------------iida~~~~~~~a~i~~Visd~~~A~~lerA~~~----gIpt~~~ 56 (200)
T COG0299 1 KKIAVLASGNGSNLQA--------------------IIDAIKGGKLDAEIVAVISDKADAYALERAAKA----GIPTVVL 56 (200)
T ss_pred CeEEEEEeCCcccHHH--------------------HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHc----CCCEEEe
Confidence 5789999999998844 5566653322 3555555444 33333444332 6655433
Q ss_pred ccCCcCC---CcHHHHHHHhhhcCCCCCcEEEEeCCe-ecc
Q 046608 79 QETEPLG---TAGPLALARDKLIDDSGEPFFVLNSDV-ISE 115 (256)
Q Consensus 79 ~~~~~~g---~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~~ 115 (256)
......+ .-.++...++..+. .++++.|-+ +..
T Consensus 57 ~~k~~~~r~~~d~~l~~~l~~~~~----dlvvLAGyMrIL~ 93 (200)
T COG0299 57 DRKEFPSREAFDRALVEALDEYGP----DLVVLAGYMRILG 93 (200)
T ss_pred ccccCCCHHHHHHHHHHHHHhcCC----CEEEEcchHHHcC
Confidence 3222212 12345555555555 499999998 555
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=80.21 E-value=3.8 Score=36.14 Aligned_cols=80 Identities=18% Similarity=0.367 Sum_probs=52.2
Q ss_pred cEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC--CCcCceeEEEcCCCC---------eEeEEeecCCC------
Q 046608 104 PFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD--EPSKYGVVVMEETMG---------KVEKFVEKPKN------ 166 (256)
Q Consensus 104 ~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~~---------~v~~~~ek~~~------ 166 (256)
-++|..+|+++...-...+. -...++++++.+.. -.+++|+.+.|++ + .|.++.-||..
T Consensus 55 Gv~V~s~D~vl~~~~~~~~~---~~~~g~~~la~p~~~~~at~HGVfv~~~~-~~~~~~~~~~~v~~~L~KpS~eem~~~ 130 (414)
T PF07959_consen 55 GVLVCSGDMVLSVPDDPLID---WDEPGVTALAHPSSLEYATNHGVFVLDRQ-GPDEEDLEYREVKDFLQKPSEEEMRAS 130 (414)
T ss_pred ceEEEecccccccCccccCC---CCCCCEEEEEeeCCHHHhcCCeEEEeCCC-CCccccchhhhHHHhhcCCCHHHHHhC
Confidence 38999999644322112222 12256777777764 3588999999998 6 68888878752
Q ss_pred -----CCCCeEEEEEEEeCHhhHHhc
Q 046608 167 -----FVGNKINAGIYLLNPSVLDRI 187 (256)
Q Consensus 167 -----~~~~~~~~Giy~~~~~~~~~l 187 (256)
......++|++.|+.+..+.|
T Consensus 131 ~av~~~~~~~ldsG~~~~s~~~~e~L 156 (414)
T PF07959_consen 131 GAVLPDGNVLLDSGIVFFSSKAVESL 156 (414)
T ss_pred CcccCCCcccccccceeccHHHHHHH
Confidence 112266899999998776644
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.12 E-value=4.3 Score=39.56 Aligned_cols=120 Identities=17% Similarity=0.233 Sum_probs=76.4
Q ss_pred cEEEEeCCeecc--cchHHHHHHHHhcCCceEEEEEecC--CCcCceeEEEcCCC-CeEeEEeecCCC--------CCCC
Q 046608 104 PFFVLNSDVISE--YPLKQMIEFHRGHGGEASIMVTKVD--EPSKYGVVVMEETM-GKVEKFVEKPKN--------FVGN 170 (256)
Q Consensus 104 ~~lv~~~D~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~-~~v~~~~ek~~~--------~~~~ 170 (256)
.++|..||.+.. ..... -+..++++++.+.+ -.+++|+.+.+.+. +.+..+.-||.- ....
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~ 227 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLF 227 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeE
Confidence 489999997432 22222 23356666665553 35789999988752 366677777762 1223
Q ss_pred eEEEEEEEeCHhhHHhcccC----------CCCcchhhHHHHHh----------cCcEEEEEeCc-eEEecCCHHHHHHH
Q 046608 171 KINAGIYLLNPSVLDRIELK----------PTSIEKEVFPEIAV----------ENKLFAMVLPG-FWMDIGQPKDYITG 229 (256)
Q Consensus 171 ~~~~Giy~~~~~~~~~l~~~----------~~~~~~~~~~~l~~----------~~~v~~~~~~~-~~~di~t~~d~~~a 229 (256)
+.++|+|.|+.+++..|.+. ..++..|+...|-. .-++..++..+ .|+-+||-.+|...
T Consensus 228 l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~~ 307 (974)
T PRK13412 228 LMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELISS 307 (974)
T ss_pred EEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhcC
Confidence 88999999999887765421 12333444444222 23566777766 79999999999964
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 256 | ||||
| 1tzf_A | 259 | X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosph | 6e-24 | ||
| 2ggo_A | 401 | Crystal Structure Of Glucose-1-Phosphate Thymidylyl | 3e-18 | ||
| 1mp3_A | 292 | L89t Variant Of S. Enterica Rmla Length = 292 | 2e-11 | ||
| 3pkq_A | 292 | Q83d Variant Of S. Enterica Rmla With Dgtp Length = | 5e-11 | ||
| 3hl3_A | 269 | 2.76 Angstrom Crystal Structure Of A Putative Gluco | 7e-11 | ||
| 1lvw_A | 295 | Crystal Structure Of Glucose-1-phosphate Thymidylyl | 8e-11 | ||
| 3pkp_A | 292 | Q83s Variant Of S. Enterica Rmla With Datp Length = | 8e-11 | ||
| 1iim_A | 292 | Thymidylyltransferase Complexed With Ttp Length = 2 | 1e-10 | ||
| 1h5s_A | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 2e-10 | ||
| 1h5r_B | 293 | Thymidylyltransferase Complexed With Thimidine And | 3e-10 | ||
| 1mp5_A | 292 | Y177f Variant Of S. Enterica Rmla Length = 292 | 3e-10 | ||
| 1jyl_A | 254 | Catalytic Mechanism Of Ctp:phosphocholine Cytidylyt | 3e-10 | ||
| 1jyk_A | 254 | Catalytic Mechanism Of Ctp:phosphocholine Cytidylyt | 3e-10 | ||
| 1h5s_D | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 3e-10 | ||
| 1h5t_A | 293 | Thymidylyltransferase Complexed With Thymidylyldiph | 5e-10 | ||
| 1mp4_A | 292 | W224h Variant Of S. Enterica Rmla Length = 292 | 7e-10 | ||
| 4b2x_A | 303 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 2e-09 | ||
| 4arw_A | 302 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 2e-09 | ||
| 1fxo_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 2e-09 | ||
| 1mc3_A | 296 | Crystal Structure Of Rffh Length = 296 | 6e-09 | ||
| 1g23_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 8e-09 | ||
| 2qkx_A | 391 | N-Acetyl Glucosamine 1-Phosphate Uridyltransferase | 2e-08 | ||
| 3foq_A | 503 | Crystal Structure Of N-Acetylglucosamine-1-Phosphat | 3e-08 | ||
| 3spt_A | 501 | Crystal Structure Of Glmu From Mycobacterium Tuberc | 3e-08 | ||
| 3d8v_A | 495 | Crystal Structure Of Glmu From Mycobacterium Tuberc | 3e-08 | ||
| 3fww_A | 456 | The Crystal Structure Of The Bifunctional N-Acetylg | 2e-07 | ||
| 4fce_A | 459 | Crystal Structure Of Yersinia Pestis Glmu In Comlex | 7e-07 | ||
| 3juj_A | 281 | The Crystal Structure Of Apo- Udp-Glucose Pyrophosp | 1e-06 | ||
| 2e3d_A | 302 | Crystal Structure Of E. Coli Glucose-1-Phosphate Ur | 4e-06 | ||
| 2ux8_A | 297 | Crystal Structure Of Sphingomonas Elodea Atcc 31461 | 4e-06 | ||
| 4aaw_A | 459 | S.Pneumoniae Glmu In Complex With An Antibacterial | 1e-05 | ||
| 1fwy_A | 331 | Crystal Structure Of N-Acetylglucosamine 1-Phosphat | 1e-05 | ||
| 1hm9_A | 468 | Crystal Structure Of S.Pneumoniae N-Acetylglucosami | 1e-05 | ||
| 1g95_A | 459 | Crystal Structure Of S.Pneumoniae Glmu, Apo Form Le | 1e-05 | ||
| 1hv9_A | 456 | Structure Of E. Coli Glmu: Analysis Of Pyrophosphor | 2e-05 | ||
| 2v0h_A | 456 | Characterization Of Substrate Binding And Catalysis | 5e-05 |
| >pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase From Salmonella Typhi Length = 259 | Back alignment and structure |
|
| >pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate Thymidylyltransferase From Sulfolobus Tokodaii Length = 401 | Back alignment and structure |
|
| >pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292 | Back alignment and structure |
|
| >pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269 | Back alignment and structure |
|
| >pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295 | Back alignment and structure |
|
| >pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292 | Back alignment and structure |
|
| >pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292 | Back alignment and structure |
|
| >pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293 | Back alignment and structure |
|
| >pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine Cytidylytransferase From Streptococcus Pneumoniae (Licc) Length = 254 | Back alignment and structure |
|
| >pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine Cytidylytransferase From Streptococcus Pneumoniae (Licc) Length = 254 | Back alignment and structure |
|
| >pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293 | Back alignment and structure |
|
| >pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303 | Back alignment and structure |
|
| >pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302 | Back alignment and structure |
|
| >pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293 | Back alignment and structure |
|
| >pdb|1MC3|A Chain A, Crystal Structure Of Rffh Length = 296 | Back alignment and structure |
|
| >pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Glucose-1-Phosphate Complex. Length = 293 | Back alignment and structure |
|
| >pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From Mycobacterium Tuberculosis Complex With N-Acetyl Glucosamine 1-Phosphate Length = 391 | Back alignment and structure |
|
| >pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate Uridyltransferase (Glmu) From Mycobacterium Tuberculosis In A Cubic Space Group Length = 503 | Back alignment and structure |
|
| >pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Acetyl Coenzyme A And Uridine-Diphosphate-N-Acetylglucosamine Length = 501 | Back alignment and structure |
|
| >pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Uridine-Diphosphate-N-Acetylglucosamine Length = 495 | Back alignment and structure |
|
| >pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional N-Acetylglucosamine-1- Phosphate UridyltransferaseGLUCOSAMINE-1-Phosphate Acetyltransferase From Yersinia Pestis Co92 Length = 456 | Back alignment and structure |
|
| >pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With Alpha-D- Glucosamine 1-Phosphate (Gp1) Length = 459 | Back alignment and structure |
|
| >pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose Pyrophosphorylase Length = 281 | Back alignment and structure |
|
| >pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate Uridylyltransferase Length = 302 | Back alignment and structure |
|
| >pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461 Glucose- 1-phosphate Uridylyltransferase In Complex With Glucose- 1-phosphate. Length = 297 | Back alignment and structure |
|
| >pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial Inhibitor Length = 459 | Back alignment and structure |
|
| >pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate Uridyltransferase Bound To Udp-Glcnac Length = 331 | Back alignment and structure |
|
| >pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu, Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine Length = 468 | Back alignment and structure |
|
| >pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form Length = 459 | Back alignment and structure |
|
| >pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase And Acetyltransferase Active Sites Length = 456 | Back alignment and structure |
|
| >pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The Potential Antibacterial Target N-Acetylglucosamine-1- Phosphate Uridyltransferase (Glmu) Length = 456 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 2e-68
Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 21/228 (9%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKA+IL G GTRL + PKPLV +IL ++ L V+E ++ + + +
Sbjct: 19 MKAVILAAGLGTRLGGV----PKPLVRVGGCEIILRTMKLLSP-HVSEFIIVASRYADDI 73
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
FLK+ KI E G L +A++ + + F + D + +Q
Sbjct: 74 DAFLKDK--GFNYKIVRHDRPE-KGNGYSLLVAKNHV----EDRFILTMGDHVYS---QQ 123
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
IE G + + + + + +E+ G+V K + + + ++ G ++L+
Sbjct: 124 FIEKAVRGEGVIADREPRFVDIGEATKIRVED--GRVAKIGKDLRE--FDCVDTGFFVLD 179
Query: 181 PSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLP-GFWMDIGQPKDYI 227
S+ + E K E+ EI +L + WMD+ +D
Sbjct: 180 DSIFEHAE-KLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVR 226
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 209 bits (535), Expect = 5e-68
Identities = 46/246 (18%), Positives = 96/246 (39%), Gaps = 30/246 (12%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+KA+IL G GTRLRPLT + PK LV KP+I +QIE LK G+ ++++ + Y E
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQF 85
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
++K +++ + + L L +++L + + + + + +
Sbjct: 86 ----DYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELANS----YVIDADNYLFK----- 132
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
R ++ ++ + +V + KV+ + K +I +G+ +
Sbjct: 133 --NMFRNDLTRSTYFSVYREDCTNEWFLVYGDD-YKVQDIIVDSKA---GRILSGVSFWD 186
Query: 181 PSVLDRI----------ELKPTSIEKEVFPEIAVENKLFAMVLPG-FWMDIGQPKDYITG 229
++I + + E ++ L G +I +DY
Sbjct: 187 APTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKL 246
Query: 230 LRLYLD 235
+ +
Sbjct: 247 EEILKN 252
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 1e-55
Identities = 69/264 (26%), Positives = 124/264 (46%), Gaps = 28/264 (10%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MKA IL G G RL P+T + PK V +KP+I +QIE L+ G+ ++ + ++ + +
Sbjct: 1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKNK-- 58
Query: 61 LNFLKEFEKKLEIKIT-CSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYP 117
E+ +K +I+ +Q+ + GT + A+ + ++ D+ +E
Sbjct: 59 -----EYFEKKLKEISIVTQKDDIKGTGAAILSAKFN------DEALIIYGDLFFSNEKE 107
Query: 118 LKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIY 177
+ +I E +I+ KV P YGV+V++ + K +EKP+ N INAGIY
Sbjct: 108 ICNIITLK-----ENAIIGVKVSNPKDYGVLVLDNQ-NNLSKIIEKPEIPPSNLINAGIY 161
Query: 178 LLNPSVLDRIELKPTSIEKEV----FPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRL 232
LN + ++ S E+ + ++ ++ + G+WMDIG+P + I +
Sbjct: 162 KLNSDIFTYLDKISISERGELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKW 221
Query: 233 YLD-FLQKNSSSKLATGSNIIGNV 255
LD + + + I G V
Sbjct: 222 ALDNLVFSQNLGNVEDNVKIKGKV 245
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 3e-53
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 29/252 (11%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
KA+IL GG GTRL T+ PKP+V+ KP++ H ++ G+ + ++ Y+ V+
Sbjct: 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62
Query: 61 LNFLKEF--------------------EKKLEIKITCSQETEPLGTAGPLALARDKLIDD 100
+ + ++ +T + T G L + +
Sbjct: 63 KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYV--K 120
Query: 101 SGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160
E F D +++ +K I+FH+ HG +A++ T P ++G + ++ G+V F
Sbjct: 121 DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF--PPGRFGALDIQA--GQVRSF 176
Query: 161 VEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFW--M 218
EKPK G IN G ++LNPSV+D I+ T+ E+E +A + +L A PGFW M
Sbjct: 177 QEKPKGD-GAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPM 235
Query: 219 DIGQPKDYITGL 230
D + K Y+ GL
Sbjct: 236 DTLRDKVYLEGL 247
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 1e-41
Identities = 40/206 (19%), Positives = 73/206 (35%), Gaps = 32/206 (15%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M ALI+ GG GTR+ + KPL+ + +I + + L V + +A +
Sbjct: 1 MDALIMAGGKGTRMGGV----EKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKT 56
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP--L 118
++ K + K +T G L EPF V++SD+I+ +
Sbjct: 57 KEYINSAYK--DYKNIVVIDTSGKGYIEDLNECIGYF----SEPFLVVSSDLINLKSKII 110
Query: 119 KQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYL 178
++++ K P + VM ++ P + A I +
Sbjct: 111 NSIVDYFYCI---------KAKTPDVEALAVMIP-----KEKYPNPSIDFNGLVPADINV 156
Query: 179 LNPSVLDRIELKPTSIEKEVFPEIAV 204
++P + E E V E+
Sbjct: 157 VSPKHGYQKE------EIMVIDELIF 176
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255 | Back alignment and structure |
|---|
Score = 90.9 bits (224), Expect = 4e-22
Identities = 42/257 (16%), Positives = 79/257 (30%), Gaps = 25/257 (9%)
Query: 4 LILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF 63
+I + G +R + PK +++ + + H + + A + L I F
Sbjct: 3 VIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYDTAVF 62
Query: 64 LKEFEKKLEIK--ITCSQETEPLGTAGPLALARDKLID---DSGEPFFVLNSDVISEYPL 118
++E +L IK TE G A + L ++L D V N D +
Sbjct: 63 VREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFV 122
Query: 119 KQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYL 178
I H + + V + + KV + KN + + + G+Y
Sbjct: 123 FPDISQHS----DGYLEVFQGGGDNWSFAKPEHAGSTKVIQ--TAEKNPISDLCSTGLYH 176
Query: 179 LNPSVLDRI---ELKPTSIEKEVFPEIAVENKLFAMVLPGF-----------WMDIGQPK 224
N E ++ E+ + ++ G + G P
Sbjct: 177 FNRKEDYLEAYREYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPD 236
Query: 225 DYITGLRLYLDFLQKNS 241
+Y LR +
Sbjct: 237 EYTDFLRQPQPLEHHHH 253
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 9e-22
Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 10/190 (5%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
L+L G GTR+R PK L A + M+ H + A+ + +++ + + + +
Sbjct: 13 TAVLVLAAGPGTRMRS---DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRI 69
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
+ E L I + + PLGT + L DD V + D + L
Sbjct: 70 APLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTL 129
Query: 119 KQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE----KPKNFVGNKINA 174
+I HR +++ T +D+P YG ++ + +V VE P ++NA
Sbjct: 130 ADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQD-HEVMAIVEQTDATPSQREIREVNA 188
Query: 175 GIYLLNPSVL 184
G+Y + + L
Sbjct: 189 GVYAFDIAAL 198
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 2e-19
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 18/188 (9%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ +PK L A M+ H ++ A+ + V + ++ E++
Sbjct: 14 AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEE 70
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
L + ++E LGT + + L SG V+ D I+ LK
Sbjct: 71 VLAG-------QTEFVTQSEQLGTGHAVMMTEPILEGLSG-HTLVIAGDTPLITGESLKN 122
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE----KPKNFVGNKINAGI 176
+I+FH H A+I+ + D P YG +V + +V + VE +IN G
Sbjct: 123 LIDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGT 181
Query: 177 YLLNPSVL 184
Y+ + L
Sbjct: 182 YVFDNERL 189
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} Length = 297 | Back alignment and structure |
|---|
Score = 80.2 bits (199), Expect = 5e-18
Identities = 61/231 (26%), Positives = 97/231 (41%), Gaps = 63/231 (27%)
Query: 2 KALILVGGFGTRLRPLTLSVPK---PLVDFANKPMILHQIEALKAVGVTEVVL------- 51
KA+ V G GTR P T ++PK P+VD +P+I + ++ G+ +++
Sbjct: 16 KAVFPVAGLGTRFLPATKAMPKEMLPVVD---RPLIQYAVDEAVEAGIEQMIFVTGRGKS 72
Query: 52 AI------NYQPEVMLNFLKEFEKKLEIK-------ITCS---QETEPLGTAGPLAL--- 92
A+ Y+ E + K L++ + Q EP+G L
Sbjct: 73 ALEDHFDIAYELE---ATMAARGKSLDVLDGTRLKPGNIAYVRQ-QEPMG------LGHA 122
Query: 93 ---ARDKLIDDSGEPFFVLNSDVI--SEYP-LKQMIEFHRGHGGEASIMVTKV--DEPSK 144
AR ++ D EPF VL D + LKQM++ + GG I +V D+ +
Sbjct: 123 VWCAR-DIVGD--EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHR 178
Query: 145 YGVVVMEETMG---KVEKFVEKPKNFVG----NKINAGIYLLNPSVLDRIE 188
YG++ G +V+ VEKP G N G Y+L P V+ +E
Sbjct: 179 YGIITPGTQDGVLTEVKGLVEKPA--PGTAPSNLSVIGRYILQPEVMRILE 227
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* Length = 281 | Back alignment and structure |
|---|
Score = 78.6 bits (195), Expect = 2e-17
Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 56/229 (24%)
Query: 2 KALILVGGFGTRLRPLTLSVPK---PLVDFANKPMILHQIEALKAVGVTEVVL------- 51
K L G+GTR P+T ++PK P+VD KP+I + +E G + +
Sbjct: 4 KCLFPAAGYGTRFLPITKTIPKEMLPIVD---KPLIQYAVEEAMEAGCEVMAIVTGRNKR 60
Query: 52 AI------NYQPEVMLNFLKEFEKKLEIKITCSQETEPLGT------AGPLAL------A 93
++ +Y+ E + ++ K+ +K + L
Sbjct: 61 SLEDYFDTSYEIE---HQIQGTNKENALKSI--RNIIEKCCFSYVRQKQMKGLGHAILTG 115
Query: 94 RDKLIDDSGEPFFVLNSDVI----SEYP-LKQMIEFHRGHGGEASIMVTKV--DEPSKYG 146
LI + EPF V+ +D + LKQM ++ + + + + +V +E SKYG
Sbjct: 116 E-ALIGN--EPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVAIEEVALEEVSKYG 171
Query: 147 VVVMEETMG---KVEKFVEKPKNFVG----NKINAGIYLLNPSVLDRIE 188
V+ E +++ VEKP N G Y+L P + + +
Sbjct: 172 VIRGEWLEEGVYEIKDMVEKPN--QEDAPSNLAVIGRYILTPDIFEILS 218
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 4e-17
Identities = 56/190 (29%), Positives = 80/190 (42%), Gaps = 21/190 (11%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M +IL G GTR+ +PK L A KPM+ H I+A +G V L + E++
Sbjct: 9 MSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGELL 65
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
L + + + E LGT + A DD E +L DV IS L
Sbjct: 66 KKTLADPS------LNWVLQAEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTL 117
Query: 119 KQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE----KPKNFVGNKINA 174
++++ G ++ K+D PS YG +V E G V VE N+IN
Sbjct: 118 QRLLAAKPEGG--IGLLTVKLDNPSGYGRIVREN--GDVVGIVEHKDASDAQREINEINT 173
Query: 175 GIYLLNPSVL 184
GI + N L
Sbjct: 174 GILVANGRDL 183
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 4e-17
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 21/190 (11%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ A+IL G GTR+ +PK L A KPM+ H I+ +G + L + ++M
Sbjct: 6 LSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLM 62
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPL 118
L + + +TE LGTA + A D+ E VL D I++ L
Sbjct: 63 RTHLANEQ------VNWVLQTEQLGTAHAVQQAAPFFKDN--ENIVVLYGDAPLITKETL 114
Query: 119 KQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE----KPKNFVGNKINA 174
+++IE +G +++ +D P+ YG ++ E G V VE + ++N
Sbjct: 115 EKLIEAKPENG--IALLTVNLDNPTGYGRIIREN--GNVVAIVEQKDANAEQLNIKEVNT 170
Query: 175 GIYLLNPSVL 184
G+ + + +
Sbjct: 171 GVMVSDGASF 180
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} Length = 302 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 3e-16
Identities = 65/236 (27%), Positives = 94/236 (39%), Gaps = 65/236 (27%)
Query: 2 KALILVGGFGTRLRPLTLSVPK---PLVDFANKPMILHQIEALKAVGVTEVVL------- 51
KA+I V G GTR+ P T ++PK PLVD KP+I + + A G+TE+VL
Sbjct: 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVD---KPLIQYVVNECIAAGITEIVLVTHSSKN 66
Query: 52 AI------NYQPEVML------NFLKEFEKKLEIKITCS---QETEPLGTAGPLAL---- 92
+I +++ E ML L E + +T Q G L
Sbjct: 67 SIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQG-LAKG------LGHAV 119
Query: 93 --ARDKLIDDSGEPFFVLNSDVI--------SEYPLKQMIEFHRGHGGEASIMVTKVDEP 142
A ++ D EP V+ DVI S+ L +MI G + IMV V +
Sbjct: 120 LCAH-PVVGD--EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIMVEPVADV 175
Query: 143 SKYGVVVMEETMG------KVEKFVEKPKNFVG----NKINAGIYLLNPSVLDRIE 188
+ YGVV + + VEKPK N G Y+L+ + +
Sbjct: 176 TAYGVVDCKGVELAPGESVPMVGVVEKPK--ADVAPSNLAIVGRYVLSADIWPLLA 229
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 323 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 4e-15
Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 47/225 (20%)
Query: 2 KALILVGGFGTRLRPLTLSVPK---PLVDFANKPMILHQIEALKAVGVTEVVL------- 51
++ G GTR P T +VPK P+VD P I +G T + +
Sbjct: 14 TVVVPAAGLGTRFLPATKTVPKELLPVVD---TPGIELIAAEAAELGATRLAIITAPNKA 70
Query: 52 AI------NYQPEVML------NFLKEFEKKLEIKITCS---QETEPLGTAGPLALARDK 96
+ + + E L + ++ + ++ I Q+ +PLG + LA
Sbjct: 71 GVLAHFERSSELEETLMERGKTDQVEIIRRAADL-IKAVPVTQD-KPLGLGHAVGLAES- 127
Query: 97 LIDDSGEPFFV-LNSDVISEYP-LKQMIEFHRGHGGEASIMVTKV--DEPSKYGVV---- 148
++DD + V L D++ +++M + GG + + +V + SKYG+
Sbjct: 128 VLDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEA 186
Query: 149 -VMEETMGKVEKFVEKPKNFVG----NKINAGIYLLNPSVLDRIE 188
+ + KV+ VEKP + G YLL+ + D +
Sbjct: 187 DTKDSDVKKVKGMVEKPA--IEDAPSRLAATGRYLLDRKIFDALR 229
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Length = 232 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 2e-11
Identities = 25/156 (16%), Positives = 50/156 (32%), Gaps = 27/156 (17%)
Query: 1 MK--ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
M+ A++L GG + K LV + +PM+ +EAL A G++ V + N
Sbjct: 1 MRPSAIVLAGGKEAWAERFGVG-SKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV 59
Query: 59 VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEY 116
+ G L + ++ V D+ ++E
Sbjct: 60 ------------------PAPALTLPDRGGLLENLE-QALEHVEGRVLVATGDIPHLTEE 100
Query: 117 PLKQMIEFHRGHGGEASIMVTKVDE---PSKYGVVV 149
++ +++ I+ + E P
Sbjct: 101 AVRFVLDKAPEAALVYPIVPKEAVEARFPRTKRTYA 136
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 9e-11
Identities = 42/285 (14%), Positives = 80/285 (28%), Gaps = 67/285 (23%)
Query: 1 MK--ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
MK +L G G+R +L + ++ + + G +V I + E
Sbjct: 4 MKPTLFVLAAGMGSRYG--SLKQLDGIGP-GGDTIMDYSVYDAIRAGFGRLVFVIRHSFE 60
Query: 59 VML--NFLKEFEKKLEIK-------------ITCSQETEPLGTAGPLALARDKLIDDSGE 103
L ++E ++ ++ +P GT + + RD + E
Sbjct: 61 KEFREKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI----RE 116
Query: 104 PFFVLNSD----VISEYPLKQMIEFHRGHGGEASIMVTKVD------EPSKYGVVVMEET 153
PF V+N+D L + + G GE ++ +V GV ++E
Sbjct: 117 PFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVDEK 176
Query: 154 --------MGKVEKFVEKPKNFVGNK----------INAGIYLLNPSVLDRIELKPTSIE 195
+E+ ++ ++ P D E +
Sbjct: 177 HLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFINFL 236
Query: 196 KEVFPEIAVE-------------NKLFAMVLP--GFWMDIGQPKD 225
E E + VL W + D
Sbjct: 237 NAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDD 281
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A Length = 197 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-10
Identities = 17/129 (13%), Positives = 47/129 (36%), Gaps = 13/129 (10%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
++L G RL PK L+ + + ++ ++ + G +++L +
Sbjct: 8 GVVLAAGRSNRLGT-----PKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASA--- 59
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
++ + ++ E G A L +A ++ ++ D ++ L++
Sbjct: 60 -VRAAMALDGTDVVVVEDVE-RGCAASLRVALARV-HPRATGIVLMLGDQPQVAPATLRR 116
Query: 121 MIEFHRGHG 129
+I+
Sbjct: 117 IIDVGPATE 125
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 5e-09
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 28/129 (21%)
Query: 120 QMIEFHRGHGGEASIMVTKVD--EPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINA--- 174
M++ H G + +I +V E + +GV+ + E ++ F+EKP + G N
Sbjct: 144 YMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEK-DEIIDFIEKPADPPGIPGNEGFA 202
Query: 175 ----GIYLLNPSVL----DRIELKPTSIE---KEVFPEIAVENKLFA-----------MV 212
GIY+ + L R PTS K++ P I K A
Sbjct: 203 LASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFE 262
Query: 213 LPGFWMDIG 221
+W D+G
Sbjct: 263 HEPYWRDVG 271
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANK 31
A +L GG G+RL+ LT KP V F K
Sbjct: 15 AYVLAGGRGSRLKELTDRRAKPAVYFGGK 43
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Length = 199 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 13/129 (10%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
++L G+ RL PK L+ + ++ + + ++++ + +
Sbjct: 8 GVVLAAGYSRRLG-----TPKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADE--- 59
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQ 120
+ E + + I + LG + L A + D + E ++ D I+ +
Sbjct: 60 -VLEKVELDGLDIVLVDDAG-LGCSSSLKSALTWV-DPTAEGIVLMLGDQPGITASAVAS 116
Query: 121 MIEFHRGHG 129
+I RG
Sbjct: 117 LIAGGRGAT 125
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 29/130 (22%)
Query: 120 QMIEFHRGHGGEASIMVTKVD--EPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINA--- 174
+ I+ HR + ++ +D + +G++ ++E G++ +F EKP+ +
Sbjct: 154 KFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE-GRIIEFAEKPQGEQLQAMKVDTT 212
Query: 175 ------------------GIYLLNPSVL-DRIELKPTSIE---KEVFPE-IAVENKLFAM 211
GIY+++ V+ + + K EV P ++ ++ A
Sbjct: 213 ILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAY 272
Query: 212 VLPGFWMDIG 221
+ G+W DIG
Sbjct: 273 LYDGYWEDIG 282
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 6e-04
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANK 31
+IL GG GTRL PLT KP V
Sbjct: 23 GIILGGGAGTRLYPLTKKRAKPAVPLGAN 51
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Length = 269 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-08
Identities = 60/239 (25%), Positives = 95/239 (39%), Gaps = 36/239 (15%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK +IL GG G+RL P+T K L+ PMI H + LK +T+ ++ I E M
Sbjct: 25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITD-IMIIT-GKEHM 82
Query: 61 LNFLKEFE--KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV------ 112
+ + ++ + T + + G A L L D FV N +
Sbjct: 83 GDVVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCED----------FVGNDRMVVILGD 132
Query: 113 -ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNK 171
I ++ +E A +++ VD+P ++GV ++ K+ + EKPK +
Sbjct: 133 NIFSDDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQN--RKIIEIEEKPKEPKSSY 190
Query: 172 INAGIYLLNPSVLD---------RIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIG 221
GIYL + V R EL+ T I L + G+W D G
Sbjct: 191 AVTGIYLYDSKVFSYIKELKPSARGELEITDINNWYLK----RGVLTYNEMSGWWTDAG 245
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... Length = 293 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 3e-07
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 7/168 (4%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
K +IL GG GTRL P TL++ K L+ +KPMI + + L G+ E +L I+ P+
Sbjct: 3 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIRE-ILIIS-TPQDT 60
Query: 61 LNFLKEFE--KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPL 118
F + + + + + P G A + + +D VL ++ +
Sbjct: 61 PRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSA--LVLGDNLYYGHDF 118
Query: 119 KQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKN 166
+++ AS+ V +P +YGVV ++ GK EKP
Sbjct: 119 HELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLE 165
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Length = 296 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 5e-07
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 7/168 (4%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK +IL GG GTRL P+T V K L+ +KPMI + + L G+ E +L I PE
Sbjct: 4 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIRE-ILIIT-TPEDK 61
Query: 61 LNFLKEFE--KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPL 118
F + + I++ +++ P G A + L + VL ++
Sbjct: 62 GYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPSC--LVLGDNIFFGQGF 119
Query: 119 KQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKN 166
+ A++ +V +P ++GVV ++ + EKPK
Sbjct: 120 SPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDN-FRAISLEEKPKQ 166
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 Length = 295 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 6e-07
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMI 34
MK ++L GG GTRL P+T +V K L+ +KPMI
Sbjct: 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMI 37
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Length = 197 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 5e-06
Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 21/133 (15%)
Query: 1 MK--ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
M +IL G G R K L N P+I+ I + +V Y E
Sbjct: 1 MNIGVIILAAGEGKRFGG-----DKLLAKIDNTPIIMRTIRIYGDLEKIIIVGK--YVNE 53
Query: 59 VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEY 116
++ ++ + + G + L L D V D+ +++
Sbjct: 54 ML-------PLLMDQIVIYNPFWN-EGISTSLKLGLRFFKDYDA--VLVALGDMPFVTKE 103
Query: 117 PLKQMIEFHRGHG 129
+ ++I + +
Sbjct: 104 DVNKIINTFKPNC 116
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 2e-05
Identities = 52/330 (15%), Positives = 88/330 (26%), Gaps = 123/330 (37%)
Query: 12 TRLRPLTLSVPKP---LV--DFANKPMILHQIEALKA-------------VGVTEVVLAI 53
LR L S P LV + N +A A VT+ + A
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNA-------KAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 54 NYQPEVMLNFLKEFEKK--LEI---KITCSQETEP--LGTAGPLALA------------- 93
+ + + + C + P + T P L+
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 94 -------RDKL---IDDSGE---P---------FFVLNSDV--------------ISEYP 117
DKL I+ S P V I
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 118 LKQMIEFHRGHGGEASIMVTKVDEPSKYGV--VVMEETMGKVE-------KFVEK---PK 165
+ + + H+ +V K + S + + +E + K+E V+ PK
Sbjct: 405 MVVVNKLHK------YSLVEKQPKESTISIPSIYLELKV-KLENEYALHRSIVDHYNIPK 457
Query: 166 NFVGNKINAGIYLLNPSVLDR-----I--ELKPTSIEKEV--FPEIA-----VENKLFAM 211
F + L P LD+ I LK + + F + +E K+
Sbjct: 458 TFDSDD-------LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 212 VLPGFWMDIGQPKDYITGLRLYLDFLQKNS 241
W G + + L+ Y ++ N
Sbjct: 511 STA--WNASGSILNTLQQLKFYKPYICDND 538
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 1e-04
Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 63/237 (26%)
Query: 55 YQPEVMLNFLKEFEKKLEIK--------ITCSQETEPLGTAGPLALARDKLID---DSGE 103
Y+ +++ F F + K I +E + + + +L E
Sbjct: 18 YK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 104 P----FF--VLNSDVISEYP-LKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEE---T 153
F VL + Y L I+ T+ +PS + +E+
Sbjct: 77 EMVQKFVEEVLRIN----YKFLMSPIK-------------TEQRQPSMMTRMYIEQRDRL 119
Query: 154 MGKVEKF----VEKPKNFVGNKINAGIYLLNPSVLDRIEL-------KPTSIEKEVFPEI 202
+ F V + + + K+ + L P+ + + K T + +V
Sbjct: 120 YNDNQVFAKYNVSRLQPY--LKLRQALLELRPA--KNVLIDGVLGSGK-TWVALDVCLSY 174
Query: 203 AVENKLFAMVLPGFWMDIGQ---PKDYITGL-RLYLDFLQKNSSSKLATGSNIIGNV 255
V+ K+ + FW+++ P+ + L +L + N +S+ SNI +
Sbjct: 175 KVQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRI 227
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Length = 223 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-05
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 1 MK--ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP 57
M A++ G G RLR PK V P++ H + L+A G + +V+A+ P
Sbjct: 1 MATVAVVPAAGSGERLRA---GRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAV---P 54
Query: 58 EVMLNFLKEFEKKLEIKITC 77
+ + K + I
Sbjct: 55 PALTDESKLVFGGEDSVIVS 74
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Length = 228 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-05
Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVML 61
++L GG G R++ S+PK + +P+ L+ + V E+V+
Sbjct: 7 VILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVC---DPFFR 60
Query: 62 NFLKEFEKKLEIKIT 76
+ +E+E+ +++ ++
Sbjct: 61 DIFEEYEESIDVDLS 75
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} Length = 208 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-05
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 17/91 (18%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK +LVGG G R+ + K V K +I +E T V Q E
Sbjct: 1 MKVAVLVGGVGRRI-----GMEKTEVMLCGKKLIEWVLEKYSPF-QTVFVCRDEKQAE-- 52
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLA 91
+ + E + + G +A
Sbjct: 53 -----KLSSRYEAEFI----WDLHKGVGSIA 74
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVML 61
A++L G G R+ +VPK ++ + + + + + VV+ + ++
Sbjct: 16 AILLAAGKGERMS---ENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVV 72
Query: 62 NFLKEFEKKLEI 73
EK L I
Sbjct: 73 EKRVFHEKVLGI 84
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* Length = 201 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 1e-04
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+ ++L GG R+ V K L++ KP+ H +AL ++ VV+ N E+
Sbjct: 7 ITGVVLAGGKARRMG----GVDKGLLELNGKPLWQHVADALMTQ-LSHVVVNANRHQEIY 61
Query: 61 LNF 63
Sbjct: 62 QAS 64
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAIN 54
A IL GG GTR+ +S+PK + KP+I+H +E +++++
Sbjct: 6 AQILAGGKGTRMG--NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSP 56
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Length = 236 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAIN 54
A++ GFG R++ PK + N+ ++ H + AL A V VV+AI+
Sbjct: 10 AVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAIS 59
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 1e-04
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAIN 54
ALI G G R PK V+ +K ++ H + + V V+ ++
Sbjct: 9 ALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVS 58
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Length = 371 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVML 61
++L G TR V K + N P+ L+ + L + ++V+ +
Sbjct: 6 LIMLAAGNSTRFN---TKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNI----- 57
Query: 62 NFLKEFEKKLEI 73
++K+F K E
Sbjct: 58 TYMKKFTKNYEF 69
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A 2xwn_A* Length = 231 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAIN 54
A++ G G RL VPK + +I ++ L G V VV+A+
Sbjct: 10 AIVPAAGSGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVP 59
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Length = 236 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 2e-04
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAIN-YQPEVM 60
A IL GG GTR+ +PK ++ ++P+++H IE + ++V+ ++
Sbjct: 5 AGILAGGTGTRMGISN--LPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHA 62
Query: 61 LNFLKEFEKKLEIKIT 76
+ + ++ + +I
Sbjct: 63 EDLVDKYLPLYKERII 78
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} Length = 252 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 3e-04
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLA 52
KPL D KPMI E G V++A
Sbjct: 19 KPLADIGGKPMIQWVYEQAMQAGADRVIIA 48
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* Length = 245 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 3e-04
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 23 KPLVDFANKPMILHQIE-ALKAVGVTEVVLA 52
KPL+D KPMI H E AL+ GV EV +A
Sbjct: 19 KPLLDIVGKPMIQHVYERALQVAGVAEVWVA 49
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 Length = 337 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 4e-04
Identities = 48/213 (22%), Positives = 78/213 (36%), Gaps = 45/213 (21%)
Query: 1 MK--ALILVGGFGTRLRPL-TLSVPKPLVDFA-NKPMILHQIEALKAVGVTEVVLAI--- 53
MK AL++ GG G RL PL PKP + K ++ +E L + E L
Sbjct: 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60
Query: 54 NYQPEVMLNFLKEFEKKLEIKITCSQETEPLG--TAGPLALARDKLIDDSGEPFFVLNSD 111
+ + I++ EPLG TAG + L + + + E VL +D
Sbjct: 61 DQEAVAR-------PYADGIRLLL----EPLGRDTAGAVLLGVAEALKEGAERLLVLPAD 109
Query: 112 -VISEYPLKQMIEFHRG-----HGGEASIMVT---KVDEPSK-YGVVVMEETMG---KVE 158
+ + + E +V + P YG + + G + E
Sbjct: 110 HYVGDDE-----AYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGE 164
Query: 159 KFVEKP-----KNFV--GNKINAGIYLLNPSVL 184
FVEKP ++ G N G++ P+ +
Sbjct: 165 GFVEKPSYAEALEYIRKGYVWNGGVFAFAPATM 197
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} Length = 236 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 4e-04
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 1 MK--ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN 54
M+ LI G G RL PK + + ++ + A + EV++A+
Sbjct: 24 MEVSVLIPAAGNGLRLG----RGPKAFLQVGGRTLLEWTLAAFRDAA--EVLVALP 73
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A Length = 253 | Back alignment and structure |
|---|
Score = 39.4 bits (93), Expect = 5e-04
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 23 KPLVDFANKPMILHQIE-ALKAVGVTEVVLA 52
KPL+ ++PMIL ++ A K G ++ +A
Sbjct: 18 KPLLLIHDRPMILRVVDQAKKVEGFDDLCVA 48
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, cytoplasm, lipopolysaccharide biosynthesis, magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A* Length = 264 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 6e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLA 52
KPLVD KPMI+H +E + G +++A
Sbjct: 35 KPLVDINGKPMIVHVLERARESGAERIIVA 64
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} Length = 256 | Back alignment and structure |
|---|
Score = 39.0 bits (92), Expect = 8e-04
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLA 52
K LVD A KPMI H E+ G EVV+A
Sbjct: 26 KALVDIAGKPMIQHVYESAIKSGAEEVVIA 55
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 100.0 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 100.0 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 100.0 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 100.0 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 100.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 100.0 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 100.0 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 100.0 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 99.98 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.97 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 99.97 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.97 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.97 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.97 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.97 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 99.96 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.96 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.96 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.96 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.95 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.94 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.92 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.92 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.92 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.92 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.91 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.91 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.9 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.9 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.89 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.89 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.88 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.87 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.87 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.87 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.87 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.85 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.82 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.82 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.82 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.81 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.8 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.77 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.76 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.6 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.57 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.54 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.49 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 98.3 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 98.25 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 98.05 | |
| 3cgx_A | 242 | Putative nucleotide-diphospho-sugar transferase; Y | 97.92 | |
| 1qg8_A | 255 | Protein (spore coat polysaccharide biosynthesis P | 96.32 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 95.91 | |
| 1xhb_A | 472 | Polypeptide N-acetylgalactosaminyltransferase 1; g | 95.81 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 95.08 | |
| 2d7i_A | 570 | Polypeptide N-acetylgalactosaminyltransferase 10; | 94.58 | |
| 2z86_A | 625 | Chondroitin synthase; GT-A, glycosyltransferase A, | 93.77 | |
| 3ckj_A | 329 | Putative uncharacterized protein; mycobacteria, un | 92.83 | |
| 3f1y_A | 387 | Mannosyl-3-phosphoglycerate synthase; GT-A type gl | 92.52 | |
| 2ffu_A | 501 | Ppgalnact-2, polypeptide N-acetylgalactosaminyltra | 91.78 | |
| 4hg6_A | 802 | Cellulose synthase subunit A; membrane translocati | 90.08 | |
| 2z86_A | 625 | Chondroitin synthase; GT-A, glycosyltransferase A, | 89.33 | |
| 2bo4_A | 397 | Mannosylglycerate synthase; catalysis, glycosyltra | 87.32 | |
| 4fix_A | 657 | UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 | 86.94 | |
| 3l7i_A | 729 | Teichoic acid biosynthesis protein F; GT-B fold, m | 85.68 |
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=275.57 Aligned_cols=230 Identities=22% Similarity=0.372 Sum_probs=197.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh-----------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK----------- 69 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~----------- 69 (256)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|+|++++..+.+.+++.+...
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~ 82 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTNKE 82 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGGGCBSSSSBHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CCHH
T ss_pred eEEEEECCcCCcccCccccCCCcccceECCEEHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhcccch
Confidence 689999999999999999999999999999999999999999999999999999998999888764210
Q ss_pred ---------ccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc-----hHHHHHHHHhcCCceEEE
Q 046608 70 ---------KLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-----LKQMIEFHRGHGGEASIM 135 (256)
Q Consensus 70 ---------~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-----~~~~~~~~~~~~~~~~i~ 135 (256)
..++.+.+..+..+.|+++++..+++.++.+ +|+|++||++++.+ ++++++.+.+.++ +++.
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~~---~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~v~ 158 (281)
T 3juk_A 83 NALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNE---PFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVA 158 (281)
T ss_dssp HHHHHHHHHHHHCEEEEEECSSCCCHHHHHHHTHHHHCSS---CEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-CEEE
T ss_pred hhhhhhhccccCccEEEEecCCCCCcHHHHHHHHHHcCCC---CEEEEeCCeeccCccchHHHHHHHHHHHHcCC-CEEE
Confidence 0246777777888899999999999999754 79999999988877 9999999887776 5666
Q ss_pred EEec--CCCcCceeEEEcC--CCC--eEeEEeecCC--CCCCCeEEEEEEEeCHhhHHhcccC------CCCcchhhHHH
Q 046608 136 VTKV--DEPSKYGVVVMEE--TMG--KVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELK------PTSIEKEVFPE 201 (256)
Q Consensus 136 ~~~~--~~~~~~~~v~~~~--~~~--~v~~~~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~------~~~~~~~~~~~ 201 (256)
+... .++..||++..++ + + +|.++.|||. ...++++++|+|+|++++|+.+... ...+ .++++.
T Consensus 159 ~~~~~~~~~~~~g~v~~~~~~~-g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~l~~l~~~~~~~~~e~~l-~d~i~~ 236 (281)
T 3juk_A 159 IEEVALEEVSKYGVIRGEWLEE-GVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQI-TDALRT 236 (281)
T ss_dssp EEECCTTTGGGSEEEEEEEEET-TEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHHHHHHTCCCCGGGSCCH-HHHHHH
T ss_pred EEEechhhcccCCEEEeccCCC-CceEEeEEEECcCCCCCCcceeEEEEEEECHHHHHHHHhcCCCCCCceeH-HHHHHH
Confidence 6555 5678899999886 6 7 9999999997 3456799999999999999887642 2233 788999
Q ss_pred HHhcCcEEEEEeCceEEecCCHHHHHHHHHHHHhh
Q 046608 202 IAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 202 l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~~~ 236 (256)
++..+++.++.++|+|+|||||+||.+|++.+++.
T Consensus 237 l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~ 271 (281)
T 3juk_A 237 QAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKK 271 (281)
T ss_dssp HHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 99888999999999999999999999999988765
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-40 Score=268.61 Aligned_cols=230 Identities=25% Similarity=0.369 Sum_probs=200.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCC-hHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|+|||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++|+++|+|++++. .+.+.+++... ..+++.+.+..
T Consensus 25 m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~~-~~~~~~i~~~~ 103 (269)
T 4ecm_A 25 MKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGSG-QEFGVSFTYRV 103 (269)
T ss_dssp EEEEEECCSCCGGGTTTTSSSCGGGSEETTEEHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTCEEEEEE
T ss_pred cEEEEECCCCccccccccCCCCceecEECCEEHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhhc-cccCceEEEee
Confidence 68999999999999999999999999999999999999999999999999999875 46777777642 33467787777
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
+..+.|+++++..+++.++.+ +|++++||+++..++.++++.+.++++++++++.+..++..|+++..++ ++|..
T Consensus 104 ~~~~~G~~~al~~a~~~~~~~---~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~--g~v~~ 178 (269)
T 4ecm_A 104 QDKAGGIAQALGLCEDFVGND---RMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQN--RKIIE 178 (269)
T ss_dssp CSSCCCHHHHHHTTHHHHTTS---EEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEEEEET--TEEEE
T ss_pred CCccCcHHHHHHHHHHhcCCC---cEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECCCCCCceEEEEcC--CEEEE
Confidence 778899999999999998744 8999999999988899999999988889999998888889999999884 89999
Q ss_pred EeecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
+.|||....+.++++|+|+|++++|+.+.+. ......++++.++..+++.++..+++|.|||||+||.+|++.++
T Consensus 179 ~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~ge~~l~d~l~~l~~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~ 258 (269)
T 4ecm_A 179 IEEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPSARGELEITDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRANALAR 258 (269)
T ss_dssp EEESCSSCSCSEEEEEEEEECTTHHHHHTSCCBCTTSCBCHHHHHHHHHHTTCEEEEECCSCEEECSSHHHHHHHHHHTT
T ss_pred EEECCCCCCCcEEEEEEEEECHHHHHhhhhcCCCCCCeeeHHHHHHHHHHcCCEEEEEeCCEEEeCCCHHHHHHHHHHHH
Confidence 9999977777899999999999999877532 11223688999998889999999999999999999999998765
Q ss_pred hh
Q 046608 235 DF 236 (256)
Q Consensus 235 ~~ 236 (256)
+.
T Consensus 259 ~~ 260 (269)
T 4ecm_A 259 DI 260 (269)
T ss_dssp TC
T ss_pred hc
Confidence 43
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=259.20 Aligned_cols=230 Identities=26% Similarity=0.349 Sum_probs=192.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh-----------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK----------- 69 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~----------- 69 (256)
|++||||||.|+||+|+|..+||+|+|++|+|||+|+++.+..+|+++|+|++++..+.+.+++.....
T Consensus 9 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~ 88 (302)
T 2e3d_A 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR 88 (302)
T ss_dssp CEEEEECCSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC----C
T ss_pred cEEEEECCcCcccCCccccCCCceeeEECCeEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhccch
Confidence 789999999999999999999999999999999999999999999999999999888888888764110
Q ss_pred ----------ccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc-----c---chHHHHHHHHhcCCc
Q 046608 70 ----------KLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE-----Y---PLKQMIEFHRGHGGE 131 (256)
Q Consensus 70 ----------~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~-----~---~~~~~~~~~~~~~~~ 131 (256)
..++++.+..+..+.|+++++..+++.++.+ +|+|++||++++ . +++++++.|.+.++
T Consensus 89 ~~l~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~~~~~---~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~- 164 (302)
T 2e3d_A 89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDE---PVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH- 164 (302)
T ss_dssp HHHHHHHHTSCTTCEEEEEECSSCCCHHHHHHHTHHHHCSS---CEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-
T ss_pred hhhhhhhhccccCcceEEeeCCccCCHHHHHHHHHHHcCCC---cEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-
Confidence 1256666667778899999999999999654 799999999876 2 69999998887766
Q ss_pred eEEEEEecCCCcCceeEEEc----CCCC---eEeEEeecCC--CCCCCeEEEEEEEeCHhhHHhcccCC-----CCcchh
Q 046608 132 ASIMVTKVDEPSKYGVVVME----ETMG---KVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKP-----TSIEKE 197 (256)
Q Consensus 132 ~~i~~~~~~~~~~~~~v~~~----~~~~---~v~~~~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~~-----~~~~~~ 197 (256)
+++.+.+..++..|+++..+ ++ + +|..+.|||. ...+.++++|+|+|++++++.+.... .....+
T Consensus 165 ~~i~~~~~~~~~~yg~v~~~~~~~~~-g~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d 243 (302)
T 2e3d_A 165 SQIMVEPVADVTAYGVVDCKGVELAP-GESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTD 243 (302)
T ss_dssp EEEEEEECSCGGGSEEEECTTCCCCT-TCEEEECEEEESCCTTTCSCSEEEEEEEEECTTHHHHHTCCCC----CCCHHH
T ss_pred cEEEEEEccCCCCccEEEecccccCC-CCceeEEEEEECCCCCccccceEEEEEEEECHHHHHHHHhhCCCCCCceehHH
Confidence 67777777778899999874 44 6 8999999986 34467999999999999998875421 122367
Q ss_pred hHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHHh
Q 046608 198 VFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLD 235 (256)
Q Consensus 198 ~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~~ 235 (256)
+++.+++.+++.++.++++|.|||||+||.+|+..++.
T Consensus 244 ~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~~ 281 (302)
T 2e3d_A 244 AIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGI 281 (302)
T ss_dssp HHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHHh
Confidence 88888877899999999999999999999999966654
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=252.85 Aligned_cols=228 Identities=30% Similarity=0.563 Sum_probs=181.7
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhc-cCcEE----
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK-LEIKI---- 75 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~-~~~~v---- 75 (256)
|+|||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++|+++|+|++++..+.+.+++.++... .++.+
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 82 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAE 82 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGGG
T ss_pred cEEEEECCCCcccCCCccCCCCccccEECCEEHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhcccccccccccccc
Confidence 6899999999999999999999999999999999999999999999999999999888898888764210 02222
Q ss_pred ---------------EeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC
Q 046608 76 ---------------TCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD 140 (256)
Q Consensus 76 ---------------~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 140 (256)
.+..+....|+++++..+++.+..++ +|++++||++++.++.++++.+.++++++++.. ..
T Consensus 83 ~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~~~~--~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~--~~ 158 (259)
T 1tzf_A 83 NRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDE--AFLFTYGDGVADLDIKATIDFHKAHGKKATLTA--TF 158 (259)
T ss_dssp TEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTTSS--CEEEEETTEEECCCHHHHHHHHHHHCCSEEEEE--EC
T ss_pred cceeeeeccccccceeeeecccccCcHHHHHHHHHhcCCCC--cEEEEECCEecccCHHHHHHHHHHhCCeEEEEE--ec
Confidence 11223456899999999999984322 799999999988889999999887777766543 34
Q ss_pred CCcCceeEEEcCCCCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEec
Q 046608 141 EPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDI 220 (256)
Q Consensus 141 ~~~~~~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di 220 (256)
.+..|+++..+ + ++|..+.|||... ..++++|+|+|++++|+.+......++.++++.+++.+++.++.++++|.||
T Consensus 159 ~~~~~g~v~~~-~-g~v~~~~ekp~~~-~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI 235 (259)
T 1tzf_A 159 PPGRFGALDIQ-A-GQVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPM 235 (259)
T ss_dssp CCCCSEEEEEE-T-TEEEEEEESCSCC-SCCEECCCEEECGGGGGGCCSTTCCTTTHHHHHHHHTTCEEEEEECSCEEEC
T ss_pred CCCCccEEEEc-C-CEEEEEEecCCCC-CceEEEEEEEeCHHHHHhhcccccccHHHHHHHHHHcCCEEEEEeCcEEEeC
Confidence 56789999888 5 8999999998643 4689999999999999887654455667888988888899999999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 046608 221 GQPKDYITGLRLYLD 235 (256)
Q Consensus 221 ~t~~d~~~a~~~~~~ 235 (256)
|||+||.+|++.+.+
T Consensus 236 ~t~~d~~~a~~~~~~ 250 (259)
T 1tzf_A 236 DTLRDKVYLEGLWEK 250 (259)
T ss_dssp CSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999987754
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=255.06 Aligned_cols=230 Identities=23% Similarity=0.355 Sum_probs=192.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcc-CChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~-~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++.+..+|+++|+|+++ +..+.+.+++.+. +++++++.+..
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g-~~~g~~i~~~~ 82 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDG-SEFGIQLEYAE 82 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTCEEEEEE
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEECCeeHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhcc-cccCceEEEec
Confidence 899999999999999999999999999999999999999999999999999886 5667788888652 23467777777
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
+..+.|+++++..+++.++.+ +++++.||+++ +.++.++++.+.+...++++++.+..++..||++..|++ ++|.
T Consensus 83 ~~~~~G~~~al~~a~~~i~~~---~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~v~~d~~-g~v~ 158 (296)
T 1mc3_A 83 QPSPDGLAQAFIIGETFLNGE---PSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDN-FRAI 158 (296)
T ss_dssp CSSCCCSTHHHHHTHHHHTTS---CEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETT-EEEE
T ss_pred cCCCCCHHHHHHHHHHHhCCC---CEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECCCcccCCEEEECCC-CcEE
Confidence 777899999999999999754 68888899955 567999999887666778888888888889999999987 8999
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcCcEEEEEeC-c-eEEecCCHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVENKLFAMVLP-G-FWMDIGQPKDYITGLR 231 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~~v~~~~~~-~-~~~di~t~~d~~~a~~ 231 (256)
.+.|||..+.++++++|+|+|++++++.+..- ......++++.+++.+++.++.+. + .|.|||||+||.+|+.
T Consensus 159 ~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~ 238 (296)
T 1mc3_A 159 SLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAST 238 (296)
T ss_dssp ECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHH
T ss_pred EEEECCCCCCCCEEEEEEEEEcHHHHHHHHhcCccccCCccHHHHHHHHHhcCCeEEEEeCCCCEEEeCCCHHHHHHHHH
Confidence 99999976777899999999999998876431 111226788888888887777775 6 4999999999999987
Q ss_pred HHHh
Q 046608 232 LYLD 235 (256)
Q Consensus 232 ~~~~ 235 (256)
.+..
T Consensus 239 ~~~~ 242 (296)
T 1mc3_A 239 FVQT 242 (296)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-37 Score=252.96 Aligned_cols=230 Identities=23% Similarity=0.361 Sum_probs=192.0
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcc-CChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~-~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++.+..+|+++|+|+++ +..+.+.+++.+. +++++++.+..
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~g-~~~g~~i~~~~ 82 (295)
T 1lvw_A 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDG-SQFGVRFSYRV 82 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTSEEEEEE
T ss_pred eEEEEECCCCCCccccccCCCCceecEECCeeHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhhc-cccCceEEEee
Confidence 899999999999999999999999999999999999999999999999999886 5567788888652 23477777777
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
+..+.|++.++..+++.++.+ +++++.||+++ +.++.++++.+.+...++++++.+..++..|+++..|++ ++|.
T Consensus 83 ~~~~~G~~~al~~a~~~i~~~---~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~-g~v~ 158 (295)
T 1lvw_A 83 QEEPRGIADAFIVGKDFIGDS---KVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE-GRVI 158 (295)
T ss_dssp CSSCCCGGGHHHHTHHHHTTS---CEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTT-SBEE
T ss_pred CCCCCChHHHHHHHHHHhCCC---cEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEECCCcccCCEEEECCC-CcEE
Confidence 777889999999999999754 68888899954 667999999887666778888888888889999999988 8999
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcCcEEEEEeC-c-eEEecCCHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVENKLFAMVLP-G-FWMDIGQPKDYITGLR 231 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~~v~~~~~~-~-~~~di~t~~d~~~a~~ 231 (256)
.+.|||..+.++++++|+|+|++++++.+..- ......++++.+++.+++.++.+. + .|.|||||+||.+|+.
T Consensus 159 ~~~ekp~~~~s~~~~~Giy~f~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~ 238 (295)
T 1lvw_A 159 SIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASS 238 (295)
T ss_dssp EEEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHH
T ss_pred EEEECCCCCCCCEEEEEeEEEcHHHHHHHHhcCCcccCceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHH
Confidence 99999976677899999999999998876421 111126788888888887777775 6 5999999999999987
Q ss_pred HHHh
Q 046608 232 LYLD 235 (256)
Q Consensus 232 ~~~~ 235 (256)
.+..
T Consensus 239 ~~~~ 242 (295)
T 1lvw_A 239 FIET 242 (295)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=251.78 Aligned_cols=230 Identities=22% Similarity=0.344 Sum_probs=192.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcc-CChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~-~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++.+..+|+++|+|++. ++.+.+.+++.+. +++++++.+..
T Consensus 3 ~~aIILAgG~gtRl~plT~~~pK~llpi~gkpli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g-~~~g~~i~~~~ 81 (293)
T 1fxo_A 3 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDG-SNWGLDLQYAV 81 (293)
T ss_dssp EEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTCEEEEEE
T ss_pred ceEEEECCCCCCcCccccCCCCceeCeECCEeHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhcc-cccCceEEEee
Confidence 579999999999999999999999999999999999999999999999998874 4567788888752 23477777777
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
+..+.|+++++..+++.++.+ +++++.||+++ +.++.++++.+.+.+.++++++.+..++..|+++..|++ ++|.
T Consensus 82 ~~~~~G~~~al~~a~~~i~~~---~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~v~~d~~-g~v~ 157 (293)
T 1fxo_A 82 QPSPDGLAQAFLIGESFIGND---LSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAI 157 (293)
T ss_dssp CSSCCCGGGHHHHTHHHHTTS---EEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTT-SCEE
T ss_pred CCCCCCHHHHHHHHHHHhCCC---CEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEECCCcccCcEEEECCC-CcEE
Confidence 778899999999999999754 78888899965 567999999887667778888888888889999999987 8999
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcCcEEEEEeC-c-eEEecCCHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVENKLFAMVLP-G-FWMDIGQPKDYITGLR 231 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~~v~~~~~~-~-~~~di~t~~d~~~a~~ 231 (256)
.+.|||..+.++++++|+|+|++++++.+..- ......++++.+++.+++.++... + .|.|||||+||.+|+.
T Consensus 158 ~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~ 237 (293)
T 1fxo_A 158 SLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQ 237 (293)
T ss_dssp EEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHH
T ss_pred EEEECCCCCCCCeEEEEEEEEcHHHHHHHHhcCcccCCceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHH
Confidence 99999976677899999999999998876421 111226788888888888777775 6 5999999999999987
Q ss_pred HHHh
Q 046608 232 LYLD 235 (256)
Q Consensus 232 ~~~~ 235 (256)
.+..
T Consensus 238 ~~~~ 241 (293)
T 1fxo_A 238 FIAT 241 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=267.02 Aligned_cols=235 Identities=24% Similarity=0.365 Sum_probs=187.2
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHh-hhh-----ccCc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE-FEK-----KLEI 73 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~-~~~-----~~~~ 73 (256)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|+++.+.++|+++|+|++++..+.+.+++.+ +.. ..++
T Consensus 13 ~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~v 92 (420)
T 3brk_X 13 AMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWDFFRPERNESF 92 (420)
T ss_dssp EEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHSCCCCGGGTCEE
T ss_pred eEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhhccccccccCCE
Confidence 5799999999999999999999999999999 99999999999999999999999988888888875 210 0013
Q ss_pred EEEeeccC--Cc---CCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEec--CCCcCce
Q 046608 74 KITCSQET--EP---LGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV--DEPSKYG 146 (256)
Q Consensus 74 ~v~~~~~~--~~---~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~ 146 (256)
.+....+. .+ .|++++++.+++.+...+.++|++++||++++.++.++++.+.++++++++++.+. .++..|+
T Consensus 93 ~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g 172 (420)
T 3brk_X 93 DILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFG 172 (420)
T ss_dssp EEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSE
T ss_pred EEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCccccCccc
Confidence 33322221 12 79999999999988631112799999999988889999999988888888888765 4567899
Q ss_pred eEEEcCCCCeEeEEeecCCCCC-------CCeEEEEEEEeCHhhHH-hccc------CCCCcchhhHHHHHhcCcEEEEE
Q 046608 147 VVVMEETMGKVEKFVEKPKNFV-------GNKINAGIYLLNPSVLD-RIEL------KPTSIEKEVFPEIAVENKLFAMV 212 (256)
Q Consensus 147 ~v~~~~~~~~v~~~~ek~~~~~-------~~~~~~Giy~~~~~~~~-~l~~------~~~~~~~~~~~~l~~~~~v~~~~ 212 (256)
++..+++ ++|..+.|||.... +.++++|+|+|++++|. .+.+ +...+..++++.+++.+++.++.
T Consensus 173 ~v~~d~~-g~v~~~~ekp~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g~v~~~~ 251 (420)
T 3brk_X 173 VMHVNEK-DEIIDFIEKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHR 251 (420)
T ss_dssp EEEECTT-SBEEEEEESCSSCCCBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHSCEEEEE
T ss_pred EEEECCC-CcEEEeEeCCCccccccccccceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhCcEEEEE
Confidence 9999887 89999999986543 56899999999999874 4432 12345568888888888999999
Q ss_pred e-----------CceEEecCCHHHHHHHHHHHHhh
Q 046608 213 L-----------PGFWMDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 213 ~-----------~~~~~di~t~~d~~~a~~~~~~~ 236 (256)
+ +++|.|||||+||.+|++.++..
T Consensus 252 ~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~ 286 (420)
T 3brk_X 252 FADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDV 286 (420)
T ss_dssp HHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSS
T ss_pred eccccccccccCCCEEEECCCHHHHHHHHHHHhCC
Confidence 9 78999999999999999988764
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=257.26 Aligned_cols=231 Identities=23% Similarity=0.344 Sum_probs=171.8
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh-----------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK----------- 69 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~----------- 69 (256)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++|+++|+|++++..+.+.+++.....
T Consensus 15 ~~avIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~~~ 94 (297)
T 2ux8_A 15 RKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAARGKS 94 (297)
T ss_dssp CEEEEEECCCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTTTCC
T ss_pred cEEEEECCCCccccCccccCCCceeeeECCeEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhccch
Confidence 789999999999999999999999999999999999999999999999999999888888888753100
Q ss_pred --------ccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc---cchHHHHHHHHhcCCceEEEEEe
Q 046608 70 --------KLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE---YPLKQMIEFHRGHGGEASIMVTK 138 (256)
Q Consensus 70 --------~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~---~~~~~~~~~~~~~~~~~~i~~~~ 138 (256)
..++.+.+..+....|+++++..+++.++.+ +|+|++||++++ .+++++++.+.+.+. .++.+.+
T Consensus 95 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~~~~~---~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~ 170 (297)
T 2ux8_A 95 LDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARDIVGDE---PFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEE 170 (297)
T ss_dssp GGGGTTSCCSTTSEEEEECCSCCCHHHHHHTTHHHHCSS---CEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC-
T ss_pred hhhhhhcccCCCceEEEeCCCCCChHHHHHHHHHHcCCC---cEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEEe
Confidence 0244555556677889999999999998644 799999999876 458999998877665 4555544
Q ss_pred c--CCCcCceeEEEcC--CCC--eEeEEeecCC--CCCCCeEEEEEEEeCHhhHHhcccCC-----CCcchhhHHHHHhc
Q 046608 139 V--DEPSKYGVVVMEE--TMG--KVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKP-----TSIEKEVFPEIAVE 205 (256)
Q Consensus 139 ~--~~~~~~~~v~~~~--~~~--~v~~~~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~~-----~~~~~~~~~~l~~~ 205 (256)
. .++..|+++..++ + + +|..+.|||. ...+.++++|+|+|++++++.+.... .....++++.+++.
T Consensus 171 ~~~~~~~~yg~v~~~~~~~-~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~i~~l~~~ 249 (297)
T 2ux8_A 171 VPDDQTHRYGIITPGTQDG-VLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILENQGKGAGGEIQLTDAMQRMIGD 249 (297)
T ss_dssp ----------CCCCCCBCS-SEEEC--------------CCCEEEEEEECTHHHHHHHHTC--------CCTTGGGGTTT
T ss_pred cCcccCCCCCeEEecccCC-CceeEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhhCCCCCCeeEHHHHHHHHHhc
Confidence 4 4567798887653 3 5 8999999985 33456899999999999988775321 11126788888877
Q ss_pred CcEEEEEeCceEEecCCHHHHHHHHHHHHhh
Q 046608 206 NKLFAMVLPGFWMDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 206 ~~v~~~~~~~~~~di~t~~d~~~a~~~~~~~ 236 (256)
+++.++.++++|.|||||+||.+|+..++..
T Consensus 250 ~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~ 280 (297)
T 2ux8_A 250 QPFHGVTFQGTRYDCGDKAGFIQANLAVALS 280 (297)
T ss_dssp SCEEEEECSSEEEETTSHHHHHHHHHHHHHH
T ss_pred CCEEEEEecceEEeCCCHHHHHHHHHHHHhc
Confidence 8999999999999999999999999877653
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=266.24 Aligned_cols=236 Identities=19% Similarity=0.326 Sum_probs=186.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhh-hcc-------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE-KKL------- 71 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~-~~~------- 71 (256)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|+++.+.++|+++|+|++++..+.+.+++.+.. ..+
T Consensus 21 ~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 100 (451)
T 1yp2_A 21 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 100 (451)
T ss_dssp EEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------CC
T ss_pred eEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhhhcccccccccC
Confidence 6899999999999999999999999999999 9999999999999999999999998888888886421 011
Q ss_pred CcEEEeeccC-----CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC--CCcC
Q 046608 72 EIKITCSQET-----EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD--EPSK 144 (256)
Q Consensus 72 ~~~v~~~~~~-----~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~ 144 (256)
.+++....+. ...|++++++.+++.+.....++|++++||++++.++.++++.|.++++++++++.+.. ++..
T Consensus 101 ~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~ 180 (451)
T 1yp2_A 101 FVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATA 180 (451)
T ss_dssp EEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTT
T ss_pred cEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcChhhccc
Confidence 1334332222 24799999999999986321238999999999888899999999888888888877664 5678
Q ss_pred ceeEEEcCCCCeEeEEeecCCCC---------------------CCCeEEEEEEEeCHhhHH-hccc---CCCCcchhhH
Q 046608 145 YGVVVMEETMGKVEKFVEKPKNF---------------------VGNKINAGIYLLNPSVLD-RIEL---KPTSIEKEVF 199 (256)
Q Consensus 145 ~~~v~~~~~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~~~-~l~~---~~~~~~~~~~ 199 (256)
|+++..|++ ++|..+.|||... .+.++++|+|+|++++|. .+.. ....+..+++
T Consensus 181 ~g~v~~d~~-~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l 259 (451)
T 1yp2_A 181 FGLMKIDEE-GRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 259 (451)
T ss_dssp SEEEEECTT-SBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHH
T ss_pred CCEEEECCC-CCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhHH
Confidence 999999987 8999999998632 245899999999999875 4433 2345556888
Q ss_pred HHHHhc-CcEEEEEeCceEEecCCHHHHHHHHHHHHhhh
Q 046608 200 PEIAVE-NKLFAMVLPGFWMDIGQPKDYITGLRLYLDFL 237 (256)
Q Consensus 200 ~~l~~~-~~v~~~~~~~~~~di~t~~d~~~a~~~~~~~~ 237 (256)
+.++.+ .++.++..+++|.|||||+||.+|++.++.+.
T Consensus 260 ~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~ 298 (451)
T 1yp2_A 260 PGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 298 (451)
T ss_dssp HHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSS
T ss_pred HHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhccc
Confidence 888887 48999999999999999999999999887654
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=252.63 Aligned_cols=226 Identities=16% Similarity=0.206 Sum_probs=188.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCcccee--CCcchHHHHHHHHHHcCCCEEEEEccCC-hHHHHHHHHhhhhccCcEEEe
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDF--ANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITC 77 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i--~g~pli~~~l~~l~~~~i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~ 77 (256)
|++||||||.|+||+| ||+|+|+ +|+|||+|+++.+.++|+++|+|++++. .+.+.+++.+... .+..+.+
T Consensus 6 ~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~-~~~~i~~ 79 (303)
T 3pnn_A 6 PTLFVLAAGMGSRYGS-----LKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKYE-GRIPVEL 79 (303)
T ss_dssp CEEEEECTTCBCTTSS-----BCCCCCCSTTSCCHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHHT-TTSCEEE
T ss_pred eEEEEECCCCcccCCC-----CceEeEcCCCCeeHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHhc-cCCcEEE
Confidence 5799999999999998 7999999 5999999999999999999999999988 4888888875322 2444555
Q ss_pred eccC---------------CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHHHHh---cCCceEEEEEe
Q 046608 78 SQET---------------EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRG---HGGEASIMVTK 138 (256)
Q Consensus 78 ~~~~---------------~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~---~~~~~~i~~~~ 138 (256)
..+. ++.|+++++..+++.++ + +|+|++||++++.+ ++++++.|.+ .+++.++++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i~-~---~~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 155 (303)
T 3pnn_A 80 VFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIR-E---PFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYR 155 (303)
T ss_dssp EECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTCC-S---CEEEEESSCBCCHHHHHHHHHHHHTTTTCSSEEEEEEEE
T ss_pred EecccccccccccccccccccCCcHHHHHHHHHhcC-C---CEEEEECCeecCHHHHHHHHHHHHHhccccCceEEEEEE
Confidence 5444 57899999999999993 3 79999999998876 8999998876 56788888888
Q ss_pred cCCC-cCc-----eeEEEcCCCCeEeEEeecCCC-------------------CCCCeEEEEEEEeCHhhHHhccc----
Q 046608 139 VDEP-SKY-----GVVVMEETMGKVEKFVEKPKN-------------------FVGNKINAGIYLLNPSVLDRIEL---- 189 (256)
Q Consensus 139 ~~~~-~~~-----~~v~~~~~~~~v~~~~ek~~~-------------------~~~~~~~~Giy~~~~~~~~~l~~---- 189 (256)
.+++ +.| |.+.+|++ ++|+++.|||.. ..++++++|+|+|++++|+.+..
T Consensus 156 ~~~~~~~~g~~~~G~v~~d~~-g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~l~~~~~~ 234 (303)
T 3pnn_A 156 VGNTLSESGGVSRGVCQVDEK-HLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFIN 234 (303)
T ss_dssp GGGSCBTTBCEEEEEEEECTT-SBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHHHHHHHHHH
T ss_pred CCCccCccCceeeeeEeeCCC-CcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHHHHHHHHHHH
Confidence 8777 777 58888877 899999999853 25679999999999999887742
Q ss_pred ---------CCCCcchhhHHHHHhcC--cEEEEEeCceEEecCCHHHHHHHHHHHHhhh
Q 046608 190 ---------KPTSIEKEVFPEIAVEN--KLFAMVLPGFWMDIGQPKDYITGLRLYLDFL 237 (256)
Q Consensus 190 ---------~~~~~~~~~~~~l~~~~--~v~~~~~~~~~~di~t~~d~~~a~~~~~~~~ 237 (256)
+...+..++++.+++.+ ++.++.++|+|+|||||+||.+|++.+....
T Consensus 235 ~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~~~ 293 (303)
T 3pnn_A 235 FLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRELT 293 (303)
T ss_dssp HHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHHHH
T ss_pred HHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHHHH
Confidence 12233478999999888 7999999999999999999999998876654
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=252.38 Aligned_cols=231 Identities=23% Similarity=0.347 Sum_probs=186.0
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhh------------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------ 68 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~------------ 68 (256)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++.+..+|+++|+|++++..+.+.+++....
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i~gkpli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 92 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMERGKT 92 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHTTCH
T ss_pred eEEEEECCCCccccCccccCCCceeeeECCEEHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhccchh
Confidence 78999999999999999999999999999999999999999999999999999998888887764310
Q ss_pred -------h-ccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc--cchHHHHHHHHhcCCceEEEEEe
Q 046608 69 -------K-KLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--YPLKQMIEFHRGHGGEASIMVTK 138 (256)
Q Consensus 69 -------~-~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~--~~~~~~~~~~~~~~~~~~i~~~~ 138 (256)
. ..++.+.+..+....|+++++..++..+..+ .+.|+|++||++++ .+++++++.+.+.+. .++.+.+
T Consensus 93 ~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~l~~~-~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~~~~ 170 (323)
T 2pa4_A 93 DQVEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESVLDDD-EDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVE 170 (323)
T ss_dssp HHHHHTTHHHHHCEEEEEECSSCCCHHHHHHTTGGGSCSS-CCEEEEECTTEEEESSCHHHHHHHHHHTTCS-EEEEEEE
T ss_pred hhhhhhhccccCcceEEEeCCccCCcHHHHHHHHHHhcCC-CCeEEEEeCCcccCchHHHHHHHHHHHhcCC-cEEEEEE
Confidence 0 0245565566677889999999999988643 11399999999886 458999998877665 4555544
Q ss_pred c--CCCcCceeEEEc----CCCC--eEeEEeecCC--CCCCCeEEEEEEEeCHhhHHhcccCC-----CCcchhhHHHHH
Q 046608 139 V--DEPSKYGVVVME----ETMG--KVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKP-----TSIEKEVFPEIA 203 (256)
Q Consensus 139 ~--~~~~~~~~v~~~----~~~~--~v~~~~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~~-----~~~~~~~~~~l~ 203 (256)
. .+++.|+++..+ ++ + +|..+.|||. ...+.++++|+|+|++++|..+.... .....++++.++
T Consensus 171 ~~~~~~~~yg~v~~d~~~~~~-~~~~V~~~~Ekp~~~~~~~~~~~~GiY~~~~~~~~~l~~~~~~~~ge~~l~d~i~~l~ 249 (323)
T 2pa4_A 171 VSEADVSKYGIFEIEADTKDS-DVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLI 249 (323)
T ss_dssp CCGGGGGGSEEEEEEECCSST-TEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHHHHHHHCCCCGGGCCCHHHHHHHHH
T ss_pred ecccccCCccEEEeCCcccCC-CceeEEEEEECCCCccccccEEEEEEEEECHHHHHHHHhhCCCCCCeEeHHHHHHHHH
Confidence 4 356789999877 44 4 8999999985 34456899999999999988875321 111268888888
Q ss_pred hc-CcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 204 VE-NKLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 204 ~~-~~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
+. .++.++.++++|+|||||+||.+|+..++
T Consensus 250 ~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~ 281 (323)
T 2pa4_A 250 DEGHPVHIVIHQGKRHDLGNPGGYIPACVDFG 281 (323)
T ss_dssp HTTCCEEEEECCSEEEECSSHHHHHHHHHHHH
T ss_pred HcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHh
Confidence 87 58999999999999999999999997765
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=247.84 Aligned_cols=218 Identities=17% Similarity=0.262 Sum_probs=172.7
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHH-cCCCEEEEEccCChHHHHHHHHhhhhccCc--EEEeec
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEKKLEI--KITCSQ 79 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~-~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~--~v~~~~ 79 (256)
+||||||.||||+|+|..+||+|+|++|+|||+|+|+.+.+ +|++++++++++..+ +.+++.+....+++ ...+..
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gkpli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQTLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKATQLGIKQFYIAEL 80 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTEEHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHHHHTCSSEEEEEE
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCeEHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHHHcCCCCceEEEe
Confidence 89999999999999999999999999999999999999999 799999999998765 54555443222221 123345
Q ss_pred cCCcCCCcHHHHHHHhhhc-----CCCCCcEEEEeCCeec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCC
Q 046608 80 ETEPLGTAGPLALARDKLI-----DDSGEPFFVLNSDVIS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEET 153 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~-----~~~~~~~lv~~~D~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~ 153 (256)
+..+.|+++|+..|++.+. .++ +|+|++||+++ +.++.++ ...+++++++...+++ .||++..|++
T Consensus 81 ~~~~~Gt~~av~~a~~~l~~~~~~~~~--~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~p-~yG~v~~d~~ 152 (255)
T 4evw_A 81 HTETRGQAETVTLGLEELAKQGVDYQG--SITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGGD-NWSFAKPEHA 152 (255)
T ss_dssp SSCCSSHHHHHHHHHHHHHHTTCCCCS--CEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCSS-CSCEEEESST
T ss_pred CCCCCCHHHHHHHHHHHHhhcccCCCC--cEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCCC-ceeEEEECCC
Confidence 6788999999999999993 222 79999999988 4455543 2456788888888775 8999999987
Q ss_pred CC--eEeEEeecCCCCCCCeEEEEEEEeCHhh-HH-----hccc------CCCCcchhhHHHHHhcC-cEEEEEeC-ceE
Q 046608 154 MG--KVEKFVEKPKNFVGNKINAGIYLLNPSV-LD-----RIEL------KPTSIEKEVFPEIAVEN-KLFAMVLP-GFW 217 (256)
Q Consensus 154 ~~--~v~~~~ek~~~~~~~~~~~Giy~~~~~~-~~-----~l~~------~~~~~~~~~~~~l~~~~-~v~~~~~~-~~~ 217 (256)
+ +|+++.||+. .++++++|+|+|++.. |. .+.+ +...+..++++.+++.| ++.++.++ ++|
T Consensus 153 -g~~~V~~i~EK~~--~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w 229 (255)
T 4evw_A 153 -GSTKVIQTAEKNP--ISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEV 229 (255)
T ss_dssp -TCCBEEEEESSSC--SSSEEEEEEEEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGC
T ss_pred -CCeEEEEEEeccC--ccCcEEEeEEEECcHHHHHHHHHHHHhcccccccCCeEehHHHHHHHHHCCCEEEEEEeccccE
Confidence 7 9999999944 5689999999999852 21 2221 23344579999999887 78899886 899
Q ss_pred EecCCHHHHHHHHHH
Q 046608 218 MDIGQPKDYITGLRL 232 (256)
Q Consensus 218 ~di~t~~d~~~a~~~ 232 (256)
+|||||+||.++++.
T Consensus 230 ~digt~~~l~~~~~~ 244 (255)
T 4evw_A 230 IFCGVPDEYTDFLRQ 244 (255)
T ss_dssp EECCSHHHHHHHHHC
T ss_pred EECCCHHHHHHHHhc
Confidence 999999999999764
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=244.36 Aligned_cols=230 Identities=20% Similarity=0.290 Sum_probs=192.7
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.+||||||.||||+|. .||+|+|++|+|||+|+|+.|.++|+++|+|++++..+.+.+++.+..+.++..+.+..|.
T Consensus 14 ~vvILAaG~GtRm~~~---~pK~l~pv~gkp~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~i~~~~q~ 90 (501)
T 3st8_A 14 AVLVLAAGPGTRMRSD---TPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGRTIDVALQD 90 (501)
T ss_dssp EEEEEECSCCGGGCCS---SCGGGCEETTEEHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHHHHTSCCEEEECS
T ss_pred eEEEECCcCcccCCCC---CCHHHeEECChhHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 4699999999999995 4999999999999999999999999999999999999999999988666667888888999
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
++.||++|+.++++.+..+..+.++++.||..+ . ..+..+++.|...+++++++++..++|..||.+..+++ ++|.+
T Consensus 91 ~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~~~~-g~v~~ 169 (501)
T 3st8_A 91 RPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQD-HEVMA 169 (501)
T ss_dssp SCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTT-CCEEE
T ss_pred CCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccCCchhccccccccc-eeEEe
Confidence 999999999999999977544479999999943 3 44889999999999999999999999999999999998 99999
Q ss_pred EeecCCCC----CCCeEEEEEEEeCHhhHHhccc-------CCCCcchhhHHHHHhcC-cEEEEEeCceE--EecCCHHH
Q 046608 160 FVEKPKNF----VGNKINAGIYLLNPSVLDRIEL-------KPTSIEKEVFPEIAVEN-KLFAMVLPGFW--MDIGQPKD 225 (256)
Q Consensus 160 ~~ek~~~~----~~~~~~~Giy~~~~~~~~~l~~-------~~~~~~~~~~~~l~~~~-~v~~~~~~~~~--~di~t~~d 225 (256)
+.||+... ..+++++|+|+|+++.+..+.. ....+..+++..+...+ .+..+...+.| ..+++..+
T Consensus 170 ivEk~~~~~~~~~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~ 249 (501)
T 3st8_A 170 IVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQ 249 (501)
T ss_dssp EECGGGCCHHHHHCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHH
T ss_pred eccccCCChhhccceeeeceeeeecchhHHHhhhhhcccccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHH
Confidence 99997643 3568999999999988876532 12344567888887777 56677766644 35677777
Q ss_pred HHHHHHHHHh
Q 046608 226 YITGLRLYLD 235 (256)
Q Consensus 226 ~~~a~~~~~~ 235 (256)
+..+...+..
T Consensus 250 l~~~~~~~~~ 259 (501)
T 3st8_A 250 LAELASELNR 259 (501)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 7776655543
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=237.83 Aligned_cols=226 Identities=20% Similarity=0.281 Sum_probs=152.8
Q ss_pred CeEEEEeCCCCCccccCCC-CCCCcccee-CCcchHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHHhhhhccCc-EEE
Q 046608 1 MKALILVGGFGTRLRPLTL-SVPKPLVDF-ANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEI-KIT 76 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~-~~pK~ll~i-~g~pli~~~l~~l~~~~i~~i~vv~~~~~-~~i~~~~~~~~~~~~~-~v~ 76 (256)
|++||||||.|+||+|+|. ..||+|+|+ +|+|||+|+++++.++ +++|+|++++.. +.+.+++.+. +++ ++.
T Consensus 5 ~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~---~~~~~~~ 80 (308)
T 2qh5_A 5 IKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE---IKNKSVG 80 (308)
T ss_dssp EEEEEECC-------------CCGGGCTTBTTBCHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT---CSSCEEE
T ss_pred cEEEEEcCCCCccCCccCCCCCCCEEEECCCCCCHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh---hCCCccE
Confidence 6799999999999999996 799999999 6999999999999999 999999998874 5677777651 244 455
Q ss_pred eeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccc-hHHHHHH---HHhcCCceEEEEEecCCCcCceeEEEc
Q 046608 77 CSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYP-LKQMIEF---HRGHGGEASIMVTKVDEPSKYGVVVME 151 (256)
Q Consensus 77 ~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~-~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~v~~~ 151 (256)
+..+..+.|++.++..++..+..+. +|++++||+++ +.+ +.++++. +.+.++++++.+.+...+..||++..+
T Consensus 81 ~i~~~~~~gt~~al~~a~~~l~~~~--~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~g~i~~d 158 (308)
T 2qh5_A 81 FLLESLSKNTANAIALSALMSDKED--LLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTEFGYIESP 158 (308)
T ss_dssp EEEESSCCCHHHHHHHHHHTSCTTS--EEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTTSEEEECS
T ss_pred EEeCCCCCChHHHHHHHHHHhCCCC--eEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEC
Confidence 5556778899999999999885331 69999999987 555 8888886 556667788887777677889999887
Q ss_pred CCCCeEeEEeecCCCC--------CCCeEEEEEEEeCHhhH-Hhccc---------------C--C----CCc---chhh
Q 046608 152 ETMGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVL-DRIEL---------------K--P----TSI---EKEV 198 (256)
Q Consensus 152 ~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~~-~~l~~---------------~--~----~~~---~~~~ 198 (256)
++ ++|..+.|||... .+.++++|+|+|+++.| +.+.+ . . ..+ ..++
T Consensus 159 ~~-~~V~~~~Ekp~~~~~~~~~~~g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 237 (308)
T 2qh5_A 159 NG-LDVKRFIEKPSLDKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENAYFFEKKIARLSEKS 237 (308)
T ss_dssp SS-SBCSEEEESCCHHHHHHHHHHCCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHH
T ss_pred CC-CEEEEEEECCChHHHHHHhhcCCeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHHhhccccccccchhhhhhhHHH
Confidence 66 8999999998642 14589999999998775 32211 0 0 111 1243
Q ss_pred HH--------H-HHhc-CcEEEEEeCceEEecCCHHHHHHHHHHH
Q 046608 199 FP--------E-IAVE-NKLFAMVLPGFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 199 ~~--------~-l~~~-~~v~~~~~~~~~~di~t~~d~~~a~~~~ 233 (256)
++ . +++. .++.+++.+++|.|||||+||.+++..-
T Consensus 238 ~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~ 282 (308)
T 2qh5_A 238 MQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANE 282 (308)
T ss_dssp HHTSCCCCHHHHTTTTCSCEEEEECCSCCBC--------------
T ss_pred HhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcC
Confidence 33 2 4554 4899999999999999999999998653
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=239.62 Aligned_cols=232 Identities=29% Similarity=0.495 Sum_probs=181.8
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++.+.+++++++++++++. +.+++.+... ++.++ .+
T Consensus 1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~~--~i~~~--~~ 73 (401)
T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKLK--EISIV--TQ 73 (401)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHCT--TCEEE--EC
T ss_pred CeEEEEcCcCccccCcccCCCCcceeeECCEeHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccCC--cEEEE--eC
Confidence 89999999999999999999999999999999999999999999999999999775 6666654321 35444 34
Q ss_pred CC-cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc--cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeE
Q 046608 81 TE-PLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKV 157 (256)
Q Consensus 81 ~~-~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (256)
.+ +.|++.++..+++ .+ +++++.||+++. .+++++++ ..+.++++.+..++..|+++..+++ +++
T Consensus 74 ~~~~~g~~~~l~~~~~---~~---~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~~~~~~~~v~~~~~-g~v 141 (401)
T 2ggo_A 74 KDDIKGTGAAILSAKF---ND---EALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVSNPKDYGVLVLDNQ-NNL 141 (401)
T ss_dssp CTTCCBSTTTGGGCCC---SS---EEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECSCCSSSCEEEECTT-SSE
T ss_pred CCCCCChHHHHHHhcc---CC---CEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcCCCcceeEEEECCC-CeE
Confidence 44 6788888887765 22 799999999876 44666665 3567788888888888999988887 899
Q ss_pred eEEeecCCCCCCCeEEEEEEEeCHhhHHhcccC------CCCcchhhHHHHHhc-CcEEEEEeCceEEecCCHHHHHHHH
Q 046608 158 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIELK------PTSIEKEVFPEIAVE-NKLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~------~~~~~~~~~~~l~~~-~~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
..+.|||..+.+.++++|+|+|++++|+.+... ...+ .++++.+ .. .++..+..++.|.|||||+||.+|+
T Consensus 142 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~ 219 (401)
T 2ggo_A 142 SKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISISERGELEL-TDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVN 219 (401)
T ss_dssp EEEECSCSSCSCSEEEEEEEEEETHHHHHHHHSCCCSSSCBCH-HHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHH
T ss_pred EEEEECCCCCCCcEEEEEEEEEcHHHHHHhhhcCcCCCCceEH-HHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHH
Confidence 999999877777899999999999998877421 1222 5777777 54 4888999888999999999999999
Q ss_pred HHHHhhhc-ccCCcccccCceecc
Q 046608 231 RLYLDFLQ-KNSSSKLATGSNIIG 253 (256)
Q Consensus 231 ~~~~~~~~-~~~~~~~~~~~~~~g 253 (256)
+.++.+.. ......+.+++.+.|
T Consensus 220 ~~l~~~~~~~~~~~~i~~~~~i~~ 243 (401)
T 2ggo_A 220 KWALDNLVFSQNLGNVEDNVKIKG 243 (401)
T ss_dssp HHHHHHTCCCEECSEECSSCEEES
T ss_pred HHHHHhcccccccceeCCCCEEcC
Confidence 98887654 222233444444443
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-32 Score=218.65 Aligned_cols=221 Identities=18% Similarity=0.177 Sum_probs=173.0
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.+||||||.|+||+ ||+|++++|+|||+|+++.+..+++++|+|+++ .+.+.+++.++ ++++.+..+.
T Consensus 4 ~aiIlA~G~stRlp------~K~L~~i~GkPli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~~----g~~v~~~~~~ 71 (252)
T 3oam_A 4 TVVIPARYQSTRLP------GKPLADIGGKPMIQWVYEQAMQAGADRVIIATD--DERVEQAVQAF----GGVVCMTSPN 71 (252)
T ss_dssp EEEEECCCCCSSST------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHT----TCEEEECCTT
T ss_pred EEEEecCcCCCCCC------CcceeeECCEEHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHHc----CCEEEEcCCC
Confidence 58999999999993 699999999999999999999999999999994 57777777654 7888877676
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCc-----eeEEEcCCC
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKY-----GVVVMEETM 154 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~v~~~~~~ 154 (256)
...|++. +..++..++..+.+.|+++.||..+ +..+.++++.+.++++++++++.+..++..| +.+..|++
T Consensus 72 ~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~- 149 (252)
T 3oam_A 72 HQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKS- 149 (252)
T ss_dssp CCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEECTT-
T ss_pred CCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEECCC-
Confidence 7778876 6667777741112289999999933 5568999999988888899999998887777 89999988
Q ss_pred CeEeEEeecCCC-------------CCCCeEEEEEEEeCHhhHHhcccCC-CCcch----hhHHHHHhcCcEEEEEeCc-
Q 046608 155 GKVEKFVEKPKN-------------FVGNKINAGIYLLNPSVLDRIELKP-TSIEK----EVFPEIAVENKLFAMVLPG- 215 (256)
Q Consensus 155 ~~v~~~~ek~~~-------------~~~~~~~~Giy~~~~~~~~~l~~~~-~~~~~----~~~~~l~~~~~v~~~~~~~- 215 (256)
|++..|+++|-. ....+.++|+|+|++++|+.+.... ..++. +.+..+....++.++..++
T Consensus 150 g~v~~fsr~~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~~~~~e~~E~le~lr~l~~G~~i~~~~~~~~ 229 (252)
T 3oam_A 150 GYALYFSRATIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEA 229 (252)
T ss_dssp SBEEEEESSCSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSC
T ss_pred CeEEEEeCCCCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcCCCCcccccchhHHHHHHHCCCeEEEEEecCC
Confidence 999999988642 2256899999999999999875332 22221 2333333344888887655
Q ss_pred eEEecCCHHHHHHHHHHHHhh
Q 046608 216 FWMDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 216 ~~~di~t~~d~~~a~~~~~~~ 236 (256)
.|.|||||+||.+|++.+..+
T Consensus 230 ~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 230 PPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp CCCCCCSHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHhh
Confidence 789999999999999877553
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8e-31 Score=231.11 Aligned_cols=223 Identities=23% Similarity=0.335 Sum_probs=181.8
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
++||||||.|+||++ ..||+|+|++|+|||+|+++.+.++++++++|++++..+.+.+++.+ ++.++ .+.
T Consensus 13 ~~vIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~-----~i~~v--~~~ 82 (468)
T 1hm9_A 13 FAIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG-----QTEFV--TQS 82 (468)
T ss_dssp EEEEECCCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSS-----SSEEE--ECS
T ss_pred cEEEEcCCCCccCCC---CCCcEeeEECCccHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCC-----CcEEE--eCC
Confidence 689999999999986 78999999999999999999999999999999999887776665543 34443 355
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
...|++++++.+++.+... .++|++++||+ +.+.+++++++.+.+.++++++++.+..++..|+++..+++ ++|..
T Consensus 83 ~~~G~~~sl~~a~~~~~~~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~d~~-g~v~~ 160 (468)
T 1hm9_A 83 EQLGTGHAVMMTEPILEGL-SGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLR 160 (468)
T ss_dssp SCCCHHHHHHTTHHHHTTC-CSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTT-CCEEE
T ss_pred ccCChHHHHHHHHHHhccC-CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEECCC-CCEEE
Confidence 6789999999999998631 12899999999 44567999999998888888888888888888999998887 89999
Q ss_pred EeecCCC----CCCCeEEEEEEEeCHhhH-Hhccc---C---CCCcchhhHHHHHhcC-cEEEEEeCceEEe--cCCHHH
Q 046608 160 FVEKPKN----FVGNKINAGIYLLNPSVL-DRIEL---K---PTSIEKEVFPEIAVEN-KLFAMVLPGFWMD--IGQPKD 225 (256)
Q Consensus 160 ~~ek~~~----~~~~~~~~Giy~~~~~~~-~~l~~---~---~~~~~~~~~~~l~~~~-~v~~~~~~~~~~d--i~t~~d 225 (256)
+.|||.. ....++++|+|+|+++.+ +.+.+ . ...+..++++.+++.+ ++.++.++++|.+ |+||+|
T Consensus 161 ~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~d 240 (468)
T 1hm9_A 161 IVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVA 240 (468)
T ss_dssp EECTTTCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHH
T ss_pred EEECCCCChHHhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHH
Confidence 9998752 235699999999999854 44432 1 1223478899988876 8999999999976 669999
Q ss_pred HHHHHHHHHhh
Q 046608 226 YITGLRLYLDF 236 (256)
Q Consensus 226 ~~~a~~~~~~~ 236 (256)
|..|+..+..+
T Consensus 241 l~~a~~~~~~~ 251 (468)
T 1hm9_A 241 LATAESVMRRR 251 (468)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999877544
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=212.52 Aligned_cols=213 Identities=21% Similarity=0.351 Sum_probs=161.8
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++++.++|+++|+|++++..+.+.+....+ ++.++...+
T Consensus 26 ~~aiIlAaG~gtRl~plt~~~pK~l~~i~gkpli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~----~~~iv~~~~ 101 (254)
T 1jyk_A 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEKY----GVRLVFNDK 101 (254)
T ss_dssp CEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHHH----CCEEEECTT
T ss_pred ceEEEECCCCcccCCcccCCCCCEEeeECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhC----CcEEEECCC
Confidence 5799999999999999999999999999999999999999999999999999998777666554433 677776666
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEEEEEecCCC-cCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASIMVTKVDEP-SKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~~~~~~v~ 158 (256)
+.+.|+++++..+++.++ .+++++||+++..+ +.+++ +. . .+++....++ ..|+++ .|++ ++|.
T Consensus 102 ~~~~g~~~al~~a~~~~~-----~~lv~~~D~~~~~~~~~~~~----~~--~-~~~t~~~~~~~~~~~v~-~d~~-g~v~ 167 (254)
T 1jyk_A 102 YADYNNFYSLYLVKEELA-----NSYVIDADNYLFKNMFRNDL----TR--S-TYFSVYREDCTNEWFLV-YGDD-YKVQ 167 (254)
T ss_dssp TTTSCTHHHHHTTGGGCT-----TEEEEETTEEESSCCCCSCC----CS--E-EEEECEESSCSSCCEEE-ECTT-CBEE
T ss_pred ccCCCcHHHHHHHHHHCC-----CEEEEeCCcccCHHHHHHHH----hC--C-ceEEEEcccCCCCeEEE-ECCC-CeEE
Confidence 667899999999988873 38899999977544 33332 12 2 2333333444 357654 7777 8999
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhc----c---c-C--CCCcchhhHHHHHhcCcEEEEEeC-ceEEecCCHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRI----E---L-K--PTSIEKEVFPEIAVENKLFAMVLP-GFWMDIGQPKDYI 227 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l----~---~-~--~~~~~~~~~~~l~~~~~v~~~~~~-~~~~di~t~~d~~ 227 (256)
.+.|++. ..++++|+|+|+++.+..+ . + + ...+..++++.+.+..++.++.++ ++|.+||||+||.
T Consensus 168 ~~~e~~~---~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~ 244 (254)
T 1jyk_A 168 DIIVDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYR 244 (254)
T ss_dssp EEECCCS---SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHH
T ss_pred EEEECCC---CCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHH
Confidence 9999753 3488999999998643321 1 1 1 223345677777766789999887 6999999999999
Q ss_pred HHHHHHH
Q 046608 228 TGLRLYL 234 (256)
Q Consensus 228 ~a~~~~~ 234 (256)
+|++.+.
T Consensus 245 ~a~~~l~ 251 (254)
T 1jyk_A 245 KLEEILK 251 (254)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9987653
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=227.08 Aligned_cols=222 Identities=26% Similarity=0.361 Sum_probs=176.6
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.|||||||.|+||++ ..||+|+|++|+|||+|+++.+.++++++++|++++..+.+.+++.+. ++.+. .+
T Consensus 9 ~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~~----~~~~v--~~ 79 (459)
T 4fce_A 9 MSVVILAAGKGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP----SLNWV--LQ 79 (459)
T ss_dssp EEEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC---------CEE--EC
T ss_pred ceEEEECCCCCccCCC---CCCcccCeeCCeeHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC----CcEEE--eC
Confidence 4799999999999997 789999999999999999999999999999999999888887777643 34443 45
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|++++++.+++.++..+ +|++++||+ +.+.+++++++.+.+ .++++++.+..++..|+++..+ + ++|.
T Consensus 80 ~~~~g~~~~i~~~~~~~~~~~--~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~~-~-g~v~ 153 (459)
T 4fce_A 80 AEQLGTGHAMQQAAPHFADDE--DILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKLDNPSGYGRIVRE-N-GDVV 153 (459)
T ss_dssp SSCCCHHHHHHHHGGGSCTTS--EEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSCCTTSCEEEEE-T-TEEE
T ss_pred CCCCCcHHHHHHHHHhcCCCC--cEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEecCCCCcccEEEeC-C-CcEE
Confidence 677899999999999997422 899999999 445668899887654 4677788888888899999887 5 8999
Q ss_pred EEeecCCC----CCCCeEEEEEEEeCHhhHH-hccc------CCCCcchhhHHHHHhcC-cEEEEEeCce--EEecCCHH
Q 046608 159 KFVEKPKN----FVGNKINAGIYLLNPSVLD-RIEL------KPTSIEKEVFPEIAVEN-KLFAMVLPGF--WMDIGQPK 224 (256)
Q Consensus 159 ~~~ek~~~----~~~~~~~~Giy~~~~~~~~-~l~~------~~~~~~~~~~~~l~~~~-~v~~~~~~~~--~~di~t~~ 224 (256)
.+.||+.. ....++++|+|+|+++.+. .+.. ....+..++++.+...+ ++.++..+++ |++|+||+
T Consensus 154 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~ 233 (459)
T 4fce_A 154 GIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRL 233 (459)
T ss_dssp EEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHH
T ss_pred EEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHHhCccccCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHH
Confidence 99998642 2356999999999998764 3321 12233478888888876 8999999874 47899999
Q ss_pred HHHHHHHHHHhhh
Q 046608 225 DYITGLRLYLDFL 237 (256)
Q Consensus 225 d~~~a~~~~~~~~ 237 (256)
||..|+..+..++
T Consensus 234 Dl~~ae~~l~~~~ 246 (459)
T 4fce_A 234 QLSALERVFQTEQ 246 (459)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988776543
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=225.05 Aligned_cols=222 Identities=22% Similarity=0.281 Sum_probs=164.8
Q ss_pred CeEEEEeCCCCCccccCC-CCCCCccceeCC-cchHHHHHHHHHHc-CCCEEEEEccCC-hHHHHHHHHhhhhccCcEEE
Q 046608 1 MKALILVGGFGTRLRPLT-LSVPKPLVDFAN-KPMILHQIEALKAV-GVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKIT 76 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~-~~~pK~ll~i~g-~pli~~~l~~l~~~-~i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~ 76 (256)
|++||||||.|+||+|+| ...||+|+|++| +|||+|+++++..+ ++++++|++++. ...+.+++.... ...++
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~---~~~ii 78 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELP---DENII 78 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSC---GGGEE
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhccc---cceEE
Confidence 899999999999999998 689999999988 99999999999997 799999999887 355677766532 12332
Q ss_pred eeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeeccc--chHHH----HHHHHhcCCceEEEEEecCCCcCceeEEE
Q 046608 77 CSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY--PLKQM----IEFHRGHGGEASIMVTKVDEPSKYGVVVM 150 (256)
Q Consensus 77 ~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~--~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~v~~ 150 (256)
.+..+.|++.++..+...+..+ +.+++++||+++.. ++.++ ++.+.+++..+++...+....+.||++..
T Consensus 79 --~e~~~~gta~ai~~a~~~~~~~--~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~~~yG~I~~ 154 (336)
T 2x65_A 79 --AEPMKKNTAPACFIGTKLADDD--EPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEI 154 (336)
T ss_dssp --EESSCCCHHHHHHHHHTTSCTT--CEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCCSSSEEEEE
T ss_pred --eCCCCCCcHHHHHHHHHhhCCC--CEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCCCCceEEEE
Confidence 3456789999999888766432 27999999997743 45444 44455546667776666555578999987
Q ss_pred cCC----CCeEeEEeecCCCC--------CCCeEEEEEEEeCHhhH-HhcccCC-----------C---CcchhhHHH--
Q 046608 151 EET----MGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVL-DRIELKP-----------T---SIEKEVFPE-- 201 (256)
Q Consensus 151 ~~~----~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~~-~~l~~~~-----------~---~~~~~~~~~-- 201 (256)
+++ .++|.+|.|||... ...++++|+|+|+++.| +.+.+.. . .+..++++.
T Consensus 155 ~~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~ 234 (336)
T 2x65_A 155 GEELEEGVHKVAQFREKPDLETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVP 234 (336)
T ss_dssp EEEEETTEEEEEEEEESCCHHHHHHHHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSC
T ss_pred CCccCCCccEEEEEEECCChHHHHHHHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCc
Confidence 652 15899999999642 12489999999999876 4432100 0 112344443
Q ss_pred -------HHhc-CcEEEEEeCceEEecCCHHHHHHH
Q 046608 202 -------IAVE-NKLFAMVLPGFWMDIGQPKDYITG 229 (256)
Q Consensus 202 -------l~~~-~~v~~~~~~~~~~di~t~~d~~~a 229 (256)
+++. .++.+++.++.|.|||||++|.++
T Consensus 235 ~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 235 SISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp CCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred cccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 3443 589999999999999999999998
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=204.38 Aligned_cols=215 Identities=22% Similarity=0.222 Sum_probs=158.8
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.+||||||.|+||+ ||+|++++|+|||+|+++.+.++++++|+|+++ .+.+.+++..+ ++++++..+.
T Consensus 11 ~aIIlA~G~stRl~------~K~L~~i~GkPli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~~~----g~~v~~~~~~ 78 (256)
T 3tqd_A 11 RVIIPARFDSTRLP------GKALVDIAGKPMIQHVYESAIKSGAEEVVIATD--DKRIRQVAEDF----GAVVCMTSSD 78 (256)
T ss_dssp EEEEECCCC---CT------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHT----TCEEEECCTT
T ss_pred eEEEEcCCCCCCCC------CCCeeeECCchHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHHc----CCeEEEeCCC
Confidence 69999999999994 699999999999999999999999999999985 46777777654 7788776666
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhc-CCceEEEEEecCC------CcCceeEEEcC
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGH-GGEASIMVTKVDE------PSKYGVVVMEE 152 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~-~~~~~i~~~~~~~------~~~~~~v~~~~ 152 (256)
...|++. +..+++.++..+.+.++++.||..+ ...++++++.+.++ +++++.++.+..+ +...+ +..|.
T Consensus 79 ~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vk-vv~d~ 156 (256)
T 3tqd_A 79 HQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTK-VVLNR 156 (256)
T ss_dssp CCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCE-EEECT
T ss_pred CCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccE-EEECC
Confidence 6677754 7888888842112389999999944 45589999988764 4567777776633 33333 56788
Q ss_pred CCCeEeEEeecCCCC--------------CCCeEEEEEEEeCHhhHHhcccCC-CCcch----hhHHHHHhcCcEEEEEe
Q 046608 153 TMGKVEKFVEKPKNF--------------VGNKINAGIYLLNPSVLDRIELKP-TSIEK----EVFPEIAVENKLFAMVL 213 (256)
Q Consensus 153 ~~~~v~~~~ek~~~~--------------~~~~~~~Giy~~~~~~~~~l~~~~-~~~~~----~~~~~l~~~~~v~~~~~ 213 (256)
+ |++..|+++|... .+.+..+|+|.|++++++.+..-. ..++. +.++.+....++.++..
T Consensus 157 ~-g~~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l~~s~lE~~e~leqlr~le~G~~i~~~~~ 235 (256)
T 3tqd_A 157 R-NYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAEKMEALEQLRILWHGGRIHMVVA 235 (256)
T ss_dssp T-SBEEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCCEEEEC
T ss_pred C-CEEeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHhCCCCcccchhhhHHHHHHHCCCeEEEEEe
Confidence 7 9999999987522 145899999999999999875322 22221 22333444448999999
Q ss_pred Cc-eEEecCCHHHHHHHHH
Q 046608 214 PG-FWMDIGQPKDYITGLR 231 (256)
Q Consensus 214 ~~-~~~di~t~~d~~~a~~ 231 (256)
++ .|.+||||+||.+|++
T Consensus 236 ~~~~~~~idtpeDl~~a~~ 254 (256)
T 3tqd_A 236 KSKCPPGVDTEEDLERVRA 254 (256)
T ss_dssp SSCCCCCCSSHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHH
Confidence 87 4899999999999975
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=204.53 Aligned_cols=218 Identities=18% Similarity=0.178 Sum_probs=164.9
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
+.|||||||.|+||. +|+|++++|+|||+|+++.+.++++++|+|+++ .+.+.+++..+ ++++.+..+
T Consensus 19 ~~aIIlA~G~stRlp------~K~L~~i~GkPmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~~----g~~v~~~~~ 86 (264)
T 3k8d_A 19 FVVIIPARYASTRLP------GKPLVDINGKPMIVHVLERARESGAERIIVATD--HEDVARAVEAA----GGEVCMTRA 86 (264)
T ss_dssp CEEEEECCSCCSSST------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHT----TCEEEECCT
T ss_pred eEEEEEcCCCCCCCC------CcceeeECCeEHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHHc----CCEEEEecC
Confidence 369999999999993 499999999999999999999999999999984 56777776654 677776666
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCce-----eEEEcCC
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYG-----VVVMEET 153 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~v~~~~~ 153 (256)
....|++. +..++..+...+.+.++++.||..+ ...++++++.+.+.++++++++.+..++..++ .+..|++
T Consensus 87 ~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~ 165 (264)
T 3k8d_A 87 DHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAE 165 (264)
T ss_dssp TCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTT
T ss_pred CCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEEECCC
Confidence 66677755 7778777742122389999999943 45689999999888888899988886543322 3567888
Q ss_pred CCeEeEEeecCCCC-------------CCCeEEEEEEEeCHhhHHhcccCC-CCcch----hhHHHHHhcCcEEEEEeCc
Q 046608 154 MGKVEKFVEKPKNF-------------VGNKINAGIYLLNPSVLDRIELKP-TSIEK----EVFPEIAVENKLFAMVLPG 215 (256)
Q Consensus 154 ~~~v~~~~ek~~~~-------------~~~~~~~Giy~~~~~~~~~l~~~~-~~~~~----~~~~~l~~~~~v~~~~~~~ 215 (256)
|++..|+++|... .+.+.++|+|+|++++++.+.... ..++. +.+..+....++.++...+
T Consensus 166 -g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~~~~~~lE~~e~leqlr~le~G~~I~~~~~~~ 244 (264)
T 3k8d_A 166 -GYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQE 244 (264)
T ss_dssp -SBEEEEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSC
T ss_pred -CeEEEEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHhCCCChhhhHHHHHHHHHHHCCCceEEEEeCC
Confidence 9999999997521 246899999999999998764321 12221 2233333444898886655
Q ss_pred -eEEecCCHHHHHHHHHH
Q 046608 216 -FWMDIGQPKDYITGLRL 232 (256)
Q Consensus 216 -~~~di~t~~d~~~a~~~ 232 (256)
.|.+||||+||.+|++.
T Consensus 245 ~~~~~IdtpeDl~~a~~~ 262 (264)
T 3k8d_A 245 VPGTGVDTPEDLERVRAE 262 (264)
T ss_dssp CCSCCCCSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 68999999999999864
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=217.79 Aligned_cols=222 Identities=21% Similarity=0.307 Sum_probs=159.5
Q ss_pred CeEEEEeCCCCCccccCC-CCCCCccceeCC-cchHHHHHHHHHHc-CCCEEEEEccCCh-HHHHHHHHhhhhccCcEEE
Q 046608 1 MKALILVGGFGTRLRPLT-LSVPKPLVDFAN-KPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEKKLEIKIT 76 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~-~~~pK~ll~i~g-~pli~~~l~~l~~~-~i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~ 76 (256)
|++||||||.|+||+|+| ...||+|+|++| +|||+|+++++..+ ++++++|++++.. ..+.+++.. ..+
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~------~~~- 75 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG------IRL- 75 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS------SEE-
T ss_pred eEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc------Cce-
Confidence 579999999999999999 689999999988 99999999999998 7999999998763 344444432 222
Q ss_pred eeccCCcCCCcHHHHHHHhhhcCC-CCCcEEEEeCCeeccc--chHHHHHHHH---hcCCceEEEEEecCCCcCceeEEE
Q 046608 77 CSQETEPLGTAGPLALARDKLIDD-SGEPFFVLNSDVISEY--PLKQMIEFHR---GHGGEASIMVTKVDEPSKYGVVVM 150 (256)
Q Consensus 77 ~~~~~~~~g~~~s~~~~~~~i~~~-~~~~~lv~~~D~~~~~--~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~v~~ 150 (256)
..+..+.|++.++..+.. +... ..+.+++++||+++.. .+.++++.+. +.+..+++...+......||++..
T Consensus 76 -i~e~~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~~t~yG~I~~ 153 (337)
T 2cu2_A 76 -LLEPLGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRL 153 (337)
T ss_dssp -EEESSCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEE
T ss_pred -EecCCCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCCCCCceEEEE
Confidence 234557889999988877 5310 1127999999997643 4555554321 224566666666656678999987
Q ss_pred cCC---CCeEeEEeecCCCC-------CCCeEEEEEEEeCHhhH-HhcccCCCC------------cchhhHHH------
Q 046608 151 EET---MGKVEKFVEKPKNF-------VGNKINAGIYLLNPSVL-DRIELKPTS------------IEKEVFPE------ 201 (256)
Q Consensus 151 ~~~---~~~v~~~~ek~~~~-------~~~~~~~Giy~~~~~~~-~~l~~~~~~------------~~~~~~~~------ 201 (256)
+++ .++|.+|.|||... .+.++++|+|+|+++.| +.+.+.... ...+.++.
T Consensus 154 ~~~~~~~~~V~~f~EKp~~~~a~~~~~~g~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~si 233 (337)
T 2cu2_A 154 GPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISI 233 (337)
T ss_dssp EEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCH
T ss_pred CCcccccCeEEEEEeCCChHHHHHHhhcCCEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchH
Confidence 752 15899999998632 12699999999999887 544321000 01233332
Q ss_pred ---HHhc-CcEEEEEeCceEEecCCHHHHHHHHH
Q 046608 202 ---IAVE-NKLFAMVLPGFWMDIGQPKDYITGLR 231 (256)
Q Consensus 202 ---l~~~-~~v~~~~~~~~~~di~t~~d~~~a~~ 231 (256)
+++. .++.+++.++.|.|||||++|+++..
T Consensus 234 dy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~~ 267 (337)
T 2cu2_A 234 DYGVMEKAERVRVVLGRFPWDDVGNWRALERVFS 267 (337)
T ss_dssp HHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHT
T ss_pred HHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHhh
Confidence 3444 48999999999999999999998853
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=214.00 Aligned_cols=221 Identities=22% Similarity=0.338 Sum_probs=175.7
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.|||||||.|+||++ ..||+|+|++|+|||+|+++.+.++++++++|++++..+.+.+++.++ +++++ .+
T Consensus 6 ~~aiIlA~G~g~Rl~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----~~~~v--~~ 76 (456)
T 2v0h_A 6 LSAVILAAGKGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANE----QVNWV--LQ 76 (456)
T ss_dssp EEEEEECCCCCGGGCS---SSCGGGSEETTEEHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTC----CCEEE--EC
T ss_pred ceEEEECCCCCcccCC---CCCccccEECCccHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhcC----CcEEE--eC
Confidence 4689999999999986 789999999999999999999999999999999998877777776543 34443 35
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|++++++.+++.+...+ ++++++||+ +.+.+++++++.+.+ .++++++.+..++..|+.+..+ + +++.
T Consensus 77 ~~~~g~~~~~~~~~~~~~~~~--~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~~-~-g~v~ 150 (456)
T 2v0h_A 77 TEQLGTAHAVQQAAPFFKDNE--NIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNLDNPTGYGRIIRE-N-GNVV 150 (456)
T ss_dssp SCCCCHHHHHHHHGGGCCTTS--EEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSSCTTSCEEEEE-T-TEEE
T ss_pred CCCCCcHHHHHHHHHhcCCCC--eEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeecCCCCccceEEEc-C-CcEE
Confidence 567899999999999986322 899999999 335668899887765 5678888887788889988887 5 8999
Q ss_pred EEeecCCC----CCCCeEEEEEEEeCHhhH-Hhccc---C---CCCcchhhHHHHHhcC-cEEEEEeCc--eEEecCCHH
Q 046608 159 KFVEKPKN----FVGNKINAGIYLLNPSVL-DRIEL---K---PTSIEKEVFPEIAVEN-KLFAMVLPG--FWMDIGQPK 224 (256)
Q Consensus 159 ~~~ek~~~----~~~~~~~~Giy~~~~~~~-~~l~~---~---~~~~~~~~~~~l~~~~-~v~~~~~~~--~~~di~t~~ 224 (256)
.+.||+.. ....++++|+|+|+++.+ +.+.. . ...+..++++.+...+ ++..+..++ .|++||||+
T Consensus 151 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpe 230 (456)
T 2v0h_A 151 AIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRL 230 (456)
T ss_dssp EEECTTTCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHH
T ss_pred EEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHHHhccccccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHH
Confidence 99998652 134689999999999865 44432 1 1223468888888776 798899865 367999999
Q ss_pred HHHHHHHHHHhh
Q 046608 225 DYITGLRLYLDF 236 (256)
Q Consensus 225 d~~~a~~~~~~~ 236 (256)
||.+|++.+..+
T Consensus 231 Dl~~a~~~l~~~ 242 (456)
T 2v0h_A 231 QLAALERYFQNK 242 (456)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999876544
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=195.17 Aligned_cols=219 Identities=16% Similarity=0.158 Sum_probs=160.6
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHH-HHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQI-EALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l-~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.+||||||.|+||++ |+|++++|+|||+|++ +.+.++++++|+|+++ .+.+.+++..+ ++++.+..+
T Consensus 3 ~aiIlA~G~stR~~~------K~L~~i~GkPli~~~i~~~~~~~~~~~vvVvt~--~~~i~~~~~~~----g~~v~~~~~ 70 (253)
T 4fcu_A 3 HIVIPARFSSSRLPG------KPLLLIHDRPMILRVVDQAKKVEGFDDLCVATD--DERIAEICRAE----GVDVVLTSA 70 (253)
T ss_dssp EEEEECCSCCTTSTT------GGGSEETTEEHHHHHHHHHHTCTTCCEEEEEES--CHHHHHHHHTT----TCCEEECCT
T ss_pred EEEEEeCCCCCCCCC------CceeeECCeEhHHHHHHHHHHhcCCCEEEEECC--HHHHHHHHHHc----CCeEEEeCC
Confidence 589999999999964 9999999999999999 9999889999999995 46666666543 677766555
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcC-CceEEEEEec------CCCcCceeEEEc
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHG-GEASIMVTKV------DEPSKYGVVVME 151 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~-~~~~i~~~~~------~~~~~~~~v~~~ 151 (256)
....|+ +++..++..++..+.+.++++.||..+ ...++++++.+.+++ .+.+.++++. .+|..+ .+..|
T Consensus 71 ~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~-kvv~d 148 (253)
T 4fcu_A 71 DHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIV-KVVMS 148 (253)
T ss_dssp TCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSC-EEEEC
T ss_pred CCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCcc-EEEEC
Confidence 555666 578888888863222389999999943 456899999887663 3443343442 345554 45678
Q ss_pred CCCCeEeEEeecCCC-------------CCCCeEEEEEEEeCHhhHHhcccCC-CCcc-hhhH---HHHHhcCcEEEEEe
Q 046608 152 ETMGKVEKFVEKPKN-------------FVGNKINAGIYLLNPSVLDRIELKP-TSIE-KEVF---PEIAVENKLFAMVL 213 (256)
Q Consensus 152 ~~~~~v~~~~ek~~~-------------~~~~~~~~Giy~~~~~~~~~l~~~~-~~~~-~~~~---~~l~~~~~v~~~~~ 213 (256)
.+ |++..|+++|.. ....+.++|+|+|++++|..+.... ..++ .+.+ ..+....++.++..
T Consensus 149 ~~-g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~~~~~~le~~e~le~lr~l~~G~~I~~~~~ 227 (253)
T 4fcu_A 149 KQ-NEALYFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAVA 227 (253)
T ss_dssp TT-SBEEEEESSCCSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTTSCCCHHHHHHTCTTHHHHHTTCCEEEEEC
T ss_pred CC-CeEEEecCCCCCCCCCcccccccccccceeEEEEEEEeCHHHHHHHHhCCCCcccchhHHHHHHHHHCCCceEEEEe
Confidence 87 999999987642 1234789999999999999875322 2221 1223 33334348999999
Q ss_pred Cce-EEecCCHHHHHHHHHHHHh
Q 046608 214 PGF-WMDIGQPKDYITGLRLYLD 235 (256)
Q Consensus 214 ~~~-~~di~t~~d~~~a~~~~~~ 235 (256)
++. |.+||||+||.+|++.+.+
T Consensus 228 ~~~~~~~IdtpeDL~~a~~~l~~ 250 (253)
T 4fcu_A 228 EANLPPGVDTQADLDRLNNMPVE 250 (253)
T ss_dssp SSCCCCCCCSHHHHHHHHTSCGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh
Confidence 888 9999999999999875543
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-27 Score=192.42 Aligned_cols=221 Identities=18% Similarity=0.190 Sum_probs=158.0
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+ +|+|++++|+|||+|+++.+.++++++|+|++++ +.+.+++..+ ++.++...+
T Consensus 3 ~~aiIlA~G~g~R~~------~K~l~~~~gkpli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~~----~~~~~~~~~ 70 (262)
T 1vic_A 3 FTVIIPARFASSRLP------GKPLADIKGKPMIQHVFEKALQSGASRVIIATDN--ENVADVAKSF----GAEVCMTSV 70 (262)
T ss_dssp CEEEEECCCCCSSST------TGGGCEETTEEHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHT----TCEEEECCC
T ss_pred cEEEEEcCCCCCCCC------CCccccCCCeEHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHhc----CCEEEECCc
Confidence 479999999999994 4999999999999999999999999999999965 4566666543 676655433
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCC-----cCceeEEEcCC
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEP-----SKYGVVVMEET 153 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~v~~~~~ 153 (256)
....|++ ++..++..+.....+.+++++||+.+ ...++++++.+.+.++++++++.+..++ ..+..+..+++
T Consensus 71 ~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (262)
T 1vic_A 71 NHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKD 149 (262)
T ss_dssp SSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTT
T ss_pred cccCChH-HHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEECCC
Confidence 3445554 45556666643222379999999943 4568999998887777888877777653 34555555766
Q ss_pred CCeEeEEeecCC-----------------CCCCCeEEEEEEEeCHhhHHhcccCCCC-cc-hhhHH--HHHh-cCcEEEE
Q 046608 154 MGKVEKFVEKPK-----------------NFVGNKINAGIYLLNPSVLDRIELKPTS-IE-KEVFP--EIAV-ENKLFAM 211 (256)
Q Consensus 154 ~~~v~~~~ek~~-----------------~~~~~~~~~Giy~~~~~~~~~l~~~~~~-~~-~~~~~--~l~~-~~~v~~~ 211 (256)
|.+..+.+++. .+.....++|+|+|+++++..+...... +. .+++. .++. ..++.++
T Consensus 150 -g~v~~f~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~g~~v~~~ 228 (262)
T 1vic_A 150 -GYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVE 228 (262)
T ss_dssp -SBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEE
T ss_pred -CCEeeeecCCCCcCCccccccccccccccccceEEEEEEEEeeHHHHHHHHhCCCCchhhhhhHHHHHHHHCCCeEEEE
Confidence 88888877641 2223589999999999988765321111 11 11111 2343 4489999
Q ss_pred EeC-ceEEecCCHHHHHHHHHHHHh
Q 046608 212 VLP-GFWMDIGQPKDYITGLRLYLD 235 (256)
Q Consensus 212 ~~~-~~~~di~t~~d~~~a~~~~~~ 235 (256)
..+ +.|+|||||+||..|+..+..
T Consensus 229 ~~~~~~~~dI~tpeDl~~a~~~l~~ 253 (262)
T 1vic_A 229 LAKEVPAVGVDTAEDLEKVRAILAA 253 (262)
T ss_dssp ECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHh
Confidence 998 689999999999999887654
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-27 Score=189.60 Aligned_cols=218 Identities=20% Similarity=0.199 Sum_probs=156.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCC-CEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i-~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|.+||||||.|+|| | ||+|++++|+|||+|+++.+..+++ ++|+|++++ +.+.+++..+ +++++...
T Consensus 3 ~~aiIlA~G~~~R~-~-----~K~l~~i~g~pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~~----~~~~~~~~ 70 (245)
T 1h7e_A 3 AVIVIPARYGSSRL-P-----GKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQAF----GGKAIMTR 70 (245)
T ss_dssp EEEEEECCSCCSSS-T-----TGGGCEETTEEHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHHT----TCEEEECC
T ss_pred eEEEEEcCCcCCCC-C-----CCcccccCCchHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHHc----CCeEEeCC
Confidence 36899999999999 4 8999999999999999999999996 999999975 5666666653 67776554
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhc-CCceEEEEEecC-----CCcCceeEEEc
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGH-GGEASIMVTKVD-----EPSKYGVVVME 151 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~-~~~~~i~~~~~~-----~~~~~~~v~~~ 151 (256)
+....|+ .++..++..++.+ .+++++||+.+ ...++++++.+..+ ++++++.+.+.+ ++... .+..+
T Consensus 71 ~~~~~g~-~~~~~~~~~~~~~---~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 145 (245)
T 1h7e_A 71 NDHESGT-DRLVEVMHKVEAD---IYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTV-KVVVN 145 (245)
T ss_dssp SCCSSHH-HHHHHHHHHSCCS---EEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSC-EEEEC
T ss_pred CccCCcH-HHHHHHHHhCCCC---EEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCc-EEEEC
Confidence 4445566 4455666666433 79999999944 45589999988777 677777776651 12222 23335
Q ss_pred CCCCeEeEEeecCCC-C-----CCCeEEEEEEEeCHhhHHhcccCC-CCc-chhhHHHHH--h-cCcEEEEEeCceEEec
Q 046608 152 ETMGKVEKFVEKPKN-F-----VGNKINAGIYLLNPSVLDRIELKP-TSI-EKEVFPEIA--V-ENKLFAMVLPGFWMDI 220 (256)
Q Consensus 152 ~~~~~v~~~~ek~~~-~-----~~~~~~~Giy~~~~~~~~~l~~~~-~~~-~~~~~~~l~--~-~~~v~~~~~~~~~~di 220 (256)
.+ +.+..+.+++.. . .+.+.++|+|+|+++.+....... ..+ ..+.++.+. . ..++.++..++.|+||
T Consensus 146 ~~-g~~~~~~~~~~~~~r~~~~~~~~~~~g~y~~~~~~l~~~~~~~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dI 224 (245)
T 1h7e_A 146 TR-QDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGV 224 (245)
T ss_dssp TT-CBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCS
T ss_pred CC-CcEEEeecCCCCCCcccccCceeEEEEEEEcCHHHHHHHHhCCCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCC
Confidence 55 888888876432 1 125789999999999876543211 111 123333332 3 4489999999899999
Q ss_pred CCHHHHHHHHHHHHhh
Q 046608 221 GQPKDYITGLRLYLDF 236 (256)
Q Consensus 221 ~t~~d~~~a~~~~~~~ 236 (256)
|||+||..|+..+..+
T Consensus 225 dtp~Dl~~a~~~l~~~ 240 (245)
T 1h7e_A 225 DTPACLEKVRALMAQE 240 (245)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998876554
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=188.84 Aligned_cols=212 Identities=18% Similarity=0.211 Sum_probs=151.7
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.+||||||.|+||+ ||+|+|++|+|||+|+++.+.++ +++|+|++++ +.+.+++..+ +.+.+..+.
T Consensus 4 ~aiIlA~G~g~R~~------~K~l~~i~g~pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~~-----~~~~~~~~~ 69 (234)
T 2y6p_A 4 AVIIPARLGSTRLK------EKPLKNLLGKPLIRWVVEGLVKT-GERVILATDS--ERVKEVVEDL-----CEVFLTPSD 69 (234)
T ss_dssp EEEEECCSCCTTTT------TGGGCEETTEEHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTTT-----SEEEECCTT
T ss_pred EEEEEcCCCCCCCC------CCcceeECCEEHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHhc-----eEEEECCcc
Confidence 68999999999996 69999999999999999999999 9999999976 5666666532 455555444
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ecc-cchHHHHHHHHhcCCceEEEEEec---CCCcCceeEEEcCCCCe
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV-ISE-YPLKQMIEFHRGHGGEASIMVTKV---DEPSKYGVVVMEETMGK 156 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~~-~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~v~~~~~~~~ 156 (256)
...|++.++ .+++.++.+ ++++++||+ +++ .+++++++.+.+.+..++++.... .++..++ +..+++ |+
T Consensus 70 ~~~g~~~~~-~~~~~~~~~---~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-g~ 143 (234)
T 2y6p_A 70 LPSGSDRVL-YVVRDLDVD---LIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVK-VVLDRE-GY 143 (234)
T ss_dssp CCSHHHHHH-HHHTTCCCS---EEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCE-EEECTT-SB
T ss_pred cccchHHHH-HHHHhCCCC---EEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceE-EEEcCC-CC
Confidence 456666654 566666443 899999999 665 568999998877663333333311 1333344 344666 89
Q ss_pred EeEEeecCCC--C----CCCeEEEEEEEeCHhhHHhcccCCCC-cc-hh---hHHHHHhcCcEEEEEeCceEEecCCHHH
Q 046608 157 VEKFVEKPKN--F----VGNKINAGIYLLNPSVLDRIELKPTS-IE-KE---VFPEIAVENKLFAMVLPGFWMDIGQPKD 225 (256)
Q Consensus 157 v~~~~ek~~~--~----~~~~~~~Giy~~~~~~~~~l~~~~~~-~~-~~---~~~~l~~~~~v~~~~~~~~~~di~t~~d 225 (256)
|..+.+|+.. . .+.+.++|+|+|+++.+..+...... ++ .+ .++.+....++.++..+++|+|||||+|
T Consensus 144 v~~~~e~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~d 223 (234)
T 2y6p_A 144 ALYFSRSPIPYFRKNDTFYPLKHVGIYGFRKETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEED 223 (234)
T ss_dssp EEEEESSCCSCCSSCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHH
T ss_pred EeeeecCCCCcccccccceeeEEEEEEEcCHHHHHHHHhCCCCccchhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHH
Confidence 9999998742 1 13578999999999988776432111 11 11 1233334558999999999999999999
Q ss_pred HHHHHHHH
Q 046608 226 YITGLRLY 233 (256)
Q Consensus 226 ~~~a~~~~ 233 (256)
|..|+..+
T Consensus 224 l~~a~~~~ 231 (234)
T 2y6p_A 224 LKIVEEKL 231 (234)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998653
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=182.77 Aligned_cols=208 Identities=21% Similarity=0.319 Sum_probs=131.9
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+|+ ||+|++++|+|||+|+++.+.++ +++|+|++ +..+.+.+++.. .++..+.++.+
T Consensus 19 ~~~iIlA~G~g~R~~~~----~K~l~~i~g~pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~---~~~~~~~~v~~ 89 (232)
T 2xme_A 19 MKAVILAAGLGTRLGGV----PKPLVRVGGCEIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLK---DKGFNYKIVRH 89 (232)
T ss_dssp EEEEEEECC------CC----CGGGCEETTEEHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHT---TSCCCEEEEEC
T ss_pred ceEEEECCcCcCcCCCC----CcEEeEECCEEHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHH---hcCCcEEEEEC
Confidence 47999999999999884 99999999999999999999999 99999999 666677666432 12333333443
Q ss_pred CC-cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEEEEEec--CCCcCceeEEEcCCCCe
Q 046608 81 TE-PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASIMVTKV--DEPSKYGVVVMEETMGK 156 (256)
Q Consensus 81 ~~-~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~~~~~~~~ 156 (256)
.. ..|+++++..+++.++ + ++++++||++++.+ ++++++ .. . +++.... .+...++.+..+ + ++
T Consensus 90 ~~~~~g~~~~i~~a~~~~~-~---~~lv~~~D~p~~~~~~~~l~~----~~-~-~~~~~~~~~~~~~~~~~v~~~-~-g~ 157 (232)
T 2xme_A 90 DRPEKGNGYSLLVAKNHVE-D---RFILTMGDHVYSQQFIEKAVR----GE-G-VIADREPRFVDIGEATKIRVE-D-GR 157 (232)
T ss_dssp SCGGGCHHHHHHTTGGGCC-S---SEEEEETTEEECHHHHHHHTT----CC-E-EEEESSCSSSCTTTSCEEEEE-T-TE
T ss_pred CCCCCCcHHHHHHHHHHCC-C---CEEEEcCCcccCHHHHHHHHh----CC-C-cEEEccccccCCCcceEEEEc-C-CE
Confidence 33 3789999999999886 3 69999999987544 344443 21 1 2221111 123456666666 4 89
Q ss_pred EeEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeC-ceEEecCCHHHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLP-GFWMDIGQPKDYITGLRL 232 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~-~~~~di~t~~d~~~a~~~ 232 (256)
|..+.+++. ..+.+++|+|+++++++..+.+....-+ .-+..+++.+.+..+.++ +.|+|||||+||.+|++.
T Consensus 158 v~~~~~~~~--~~~~~~~g~~~~~~~~~~~l~~~~~~g~-~~l~~ll~~~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 158 VAKIGKDLR--EFDCVDTGFFVLDDSIFEHAEKLRDREE-IPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp EEEEETTCS--SCSEEEEEEEEECTTHHHHHGGGTTSSC-CCHHHHHHHHTCBEEECCSCCEEEEECC---------
T ss_pred EEEeecCCC--CcceEEEEEEEECHHHHHHHHHHHhcCh-hHHHHHHHcCCEEEEEECCCCEEeCCCHHHHHHHHhh
Confidence 999988774 3468899999999999887654211100 112233333456666665 589999999999988754
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=174.61 Aligned_cols=215 Identities=11% Similarity=0.136 Sum_probs=137.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (256)
|.+||||||.|+||++ ...||+|+|++|+|||+|+++.+.+++ +++|+|++++.. +.+.+++..++-........
T Consensus 3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGI--SNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIII- 79 (236)
T ss_dssp EEEEEEEC-------------CGGGSEETTEEHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHHHCGGGGGGEEE-
T ss_pred eEEEEeCCccccccCC--CCCCCeeeeeCCccHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHhccccccCceEE-
Confidence 5799999999999987 568999999999999999999999984 999999998876 56777665542111011111
Q ss_pred ccCCcCCCcHHHHHHHhhhcC--C--CCCcEEEEeCCe-ec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcC
Q 046608 79 QETEPLGTAGPLALARDKLID--D--SGEPFFVLNSDV-IS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEE 152 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~--~--~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~ 152 (256)
...+.|..+++..++..+.. . +.+.+++++||+ ++ ...++++++.+.++++ .+++.+..++ +..++
T Consensus 80 -~~~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~~~~~~~-----~~~~~ 151 (236)
T 2vsh_A 80 -TKGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDTVVEAVDT-----IVEST 151 (236)
T ss_dssp -EECCSSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEEEEECCSC-----EEECS
T ss_pred -ECCCCchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEEEEecccc-----EEEeC
Confidence 12235778899999988841 0 112799999999 43 4468999998876654 3444455443 22234
Q ss_pred CCC-eEeEEeecCCCCCCCeEE-EEEEEeCHhhHHhcccCCC----C-cchhhHHHHHhcC-cEEEEEeCceEEecCCHH
Q 046608 153 TMG-KVEKFVEKPKNFVGNKIN-AGIYLLNPSVLDRIELKPT----S-IEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPK 224 (256)
Q Consensus 153 ~~~-~v~~~~ek~~~~~~~~~~-~Giy~~~~~~~~~l~~~~~----~-~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~ 224 (256)
+ | ++..+.+++. ... ...++|+++.+..+..... . + .+.++.+...+ ++..+..++.|+|||||+
T Consensus 152 ~-g~~~~~~~~~~~-----~~~~~~p~~f~~~~l~~~~~~~~~~g~~~~-~~~~~~l~~~~~~v~~~~~~~~~~dIdtpe 224 (236)
T 2vsh_A 152 N-GQFITDIPNRAH-----LYQGQTPQTFRCKDFMDLYGSLSDEEKEIL-TDACKIFVIKGKDVALAKGEYSNLKITTVT 224 (236)
T ss_dssp S-SSBCCBCCCGGG-----EEEEEEEEEEEHHHHHHHHHTCCHHHHHHC-CSHHHHHHHTTCCEEEEECCTTCCCCCSHH
T ss_pred C-CCeeeeecChHH-----heeecCCcEecHHHHHHHHHHHHhcCCCcC-CCHHHHHHHcCCCEEEEECCccccCcCCHH
Confidence 4 6 7877776542 222 2378899887664322111 1 1 23334444444 788888778999999999
Q ss_pred HHHHHHHHH
Q 046608 225 DYITGLRLY 233 (256)
Q Consensus 225 d~~~a~~~~ 233 (256)
||..|+..+
T Consensus 225 Dl~~a~~~~ 233 (236)
T 2vsh_A 225 DLKIAKSMI 233 (236)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999997654
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=172.54 Aligned_cols=203 Identities=11% Similarity=0.123 Sum_probs=143.5
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.+||||||.|+||+ ||+|++++|+|||+|+++.+.+++ +++|+|++++ +.+.+++..+ ++++...+.
T Consensus 6 ~aiIlA~G~g~R~~------~K~l~~i~gkpll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~~~----~~~~~~~~~ 73 (228)
T 1ezi_A 6 IAVILARQNSKGLP------LKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKNF----GVEVVLRPA 73 (228)
T ss_dssp EEEEECCSSCSSST------TTTTCEETTEEHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHHHT----TCEEEECCC
T ss_pred EEEEecCCCCCCCC------CcccceeCCcCHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHHHc----CCEEEeCch
Confidence 39999999999997 699999999999999999999998 7999999953 5555665543 566533222
Q ss_pred ---CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCC-CcCceeEEEcCCC
Q 046608 81 ---TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDE-PSKYGVVVMEETM 154 (256)
Q Consensus 81 ---~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~v~~~~~~ 154 (256)
....|+.+++..+++.+... .+.+++++||+.+ ...++++++.+.++++++++.+.+..+ +..+ ...+++
T Consensus 74 ~~~~~~~g~~~sv~~~l~~~~~~-~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~- 149 (228)
T 1ezi_A 74 ELASDTASSISGVIHALETIGSN-SGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKT--LLQINN- 149 (228)
T ss_dssp ------CHHHHHHHHHHHHHTCC-SEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSC--EEECC--
T ss_pred HHcCCCCChHHHHHHHHHHhCCC-CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCCCccee--eEEcCC-
Confidence 13556788999999988421 1279999999944 455888888777667778887777765 3333 333665
Q ss_pred CeEeEEee-c---CC-CC--CCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeC-ceEEecCCHHHH
Q 046608 155 GKVEKFVE-K---PK-NF--VGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLP-GFWMDIGQPKDY 226 (256)
Q Consensus 155 ~~v~~~~e-k---~~-~~--~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~-~~~~di~t~~d~ 226 (256)
|.+..+.+ + +. .. .....++|+|+++++.+..... + ...++..+..+ +.|+|||||+||
T Consensus 150 g~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~--------~-----~g~~v~~~~~~~~~~~dIdtpeDl 216 (228)
T 1ezi_A 150 GEYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIANNC--------F-----FIAPTKLYIMSHQDSIDIDTELDL 216 (228)
T ss_dssp -CEEESSCHHHHTCCGGGSCCEEEEEEEEEEEEHHHHHHHTS--------S-----CCSSCEEEECCTGGGCCCCSHHHH
T ss_pred CcEeeccccccccCCcccCchhheeeeEEEEEeHHHHhhCCc--------c-----cCCceEEEEeCcccccCCCCHHHH
Confidence 78888766 2 11 11 1225678999999887665210 0 03466677766 479999999999
Q ss_pred HHHHHHH
Q 046608 227 ITGLRLY 233 (256)
Q Consensus 227 ~~a~~~~ 233 (256)
..|+..+
T Consensus 217 ~~a~~~l 223 (228)
T 1ezi_A 217 QQAENIL 223 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-24 Score=172.50 Aligned_cols=220 Identities=13% Similarity=0.097 Sum_probs=147.4
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChH-HHHHHHHhhhhccCcEEEeec
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPE-VMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~-~i~~~~~~~~~~~~~~v~~~~ 79 (256)
.+||||||.|+||++ ...||+|++++|+|||+|+++.+.+++ +++|+|+++++.. .+.+.+..+.....+.+ ..
T Consensus 5 ~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gkpll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~--~~ 80 (246)
T 3f1c_A 5 YAQILAGGKGTRMGN--VSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISDDRIVV--IE 80 (246)
T ss_dssp EEEEECC-----C-C--SSCCGGGSEETTEEHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCCTTEEE--EE
T ss_pred EEEEECCccccccCC--CCCCCeEEEECCeeHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCCCCEEE--EC
Confidence 599999999999976 467999999999999999999999997 9999999987654 35555555422112322 22
Q ss_pred cCCcCCCcHHHHHHHhhhcC----CCCCcEEEEeCCee--cccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCC
Q 046608 80 ETEPLGTAGPLALARDKLID----DSGEPFFVLNSDVI--SEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEET 153 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~----~~~~~~lv~~~D~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~ 153 (256)
.+.+..+++..+++.+.. ...+.+++++||.. ....++++++.+.+++ +.+.+.+..+ .++..+++
T Consensus 81 --~~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~--a~i~~~~~~d----~i~~~~~~ 152 (246)
T 3f1c_A 81 --GGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETG--AVDTVIEALD----TIVESSNH 152 (246)
T ss_dssp --CCSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTS--EEEEEEECSS----CEEECSSS
T ss_pred --CCCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcC--CEEEEEeccc----eEEEecCC
Confidence 245678899999998864 11228999999993 3455899999888765 4445555543 33444444
Q ss_pred CCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCC----CCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHH
Q 046608 154 MGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKP----TSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYIT 228 (256)
Q Consensus 154 ~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~----~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~ 228 (256)
+.|..+.+++. -+..-..++|+.+.+....... ..+..|....+...| ++..++.++.|++|+||+||..
T Consensus 153 -~~v~~~~~r~~----l~~~qtpq~f~~~~L~~a~~~~~~~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ 227 (246)
T 3f1c_A 153 -EVITDIPVRDH----MYQGQTPQSFNMKKVFNHYQNLTPEKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKV 227 (246)
T ss_dssp -SBCCBCCCGGG----EEEEEEEEEEEHHHHHHHHHTSCHHHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHH
T ss_pred -CeEEEecChHH----hhhhcCCceeEHHHHHHHHHHHHHcCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHH
Confidence 66666655543 1222245788876655432211 112256666677666 7989998889999999999999
Q ss_pred HHHHHHhhhc
Q 046608 229 GLRLYLDFLQ 238 (256)
Q Consensus 229 a~~~~~~~~~ 238 (256)
|+..+..+..
T Consensus 228 ae~~l~~~~~ 237 (246)
T 3f1c_A 228 ANAIIQERIA 237 (246)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHhcccc
Confidence 9987765543
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=171.06 Aligned_cols=210 Identities=17% Similarity=0.168 Sum_probs=145.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChH-HHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPE-VMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~-~i~~~~~~~~~~~~~~v~~~ 78 (256)
|.+||||||.|+||+. ..||+|++++|+|||+|+++.+..++ +++|+|++++... .+.+++. ..++.+ .
T Consensus 3 ~~~vIlA~G~g~R~~~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~----~~~v~~--~ 73 (223)
T 2xwl_A 3 TVAVVPAAGSGERLRA---GRPKAFVTLGGTPLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG----GEDSVI--V 73 (223)
T ss_dssp EEEEEECCCCCGGGTS---SSCGGGSEETTEEHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC----BTTEEE--E
T ss_pred eEEEEECCccCcccCC---CCCCeeeEECCeEHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc----cCCeEE--E
Confidence 4699999999999983 57999999999999999999999988 8999999987653 3444332 113433 3
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-cc-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SE-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
.+ ..+.++++..++..+... +.+++++||+. .+ ..++++++.+. ...++++.+.+..++..+ .+++ |+
T Consensus 74 ~~--~~~~~~~i~~al~~~~~~--~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~~~d~~~~----~~~~-g~ 143 (223)
T 2xwl_A 74 SG--GVDRTESVALALEAAGDA--EFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLAPADTIKA----VDAN-GA 143 (223)
T ss_dssp EC--CSSHHHHHHHHHTTCTTC--SEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEECCSSCEEE----ECTT-SB
T ss_pred cC--CCCHHHHHHHHHHhcCCC--CEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEecccceEE----EcCC-Cc
Confidence 32 245688999999888321 27899999994 34 45889988773 234566666665554322 2555 78
Q ss_pred EeEEeecCCCCCCCeEE-EEEEEeCHhhHHhcccCC-CCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKIN-AGIYLLNPSVLDRIELKP-TSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~-~Giy~~~~~~~~~l~~~~-~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~ 233 (256)
+..+.+++. +.. ...++|++..+..+.... ..+..+....+...+ ++..+..++.|+|||||+||..|+..+
T Consensus 144 ~~~~~e~~~-----l~~~~~p~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l 218 (223)
T 2xwl_A 144 VLGTPERAG-----LRAVQTPQGFHADVLRRAYARATAGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVL 218 (223)
T ss_dssp EEECCCGGG-----EEEECSCEEEEHHHHHHHHTTCCSCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred EEeecChHH-----heeeeCCcccCHHHHHHHHHHhhCCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHH
Confidence 888877652 222 235788887766553222 122234444444444 788888888999999999999998765
Q ss_pred H
Q 046608 234 L 234 (256)
Q Consensus 234 ~ 234 (256)
.
T Consensus 219 ~ 219 (223)
T 2xwl_A 219 A 219 (223)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-24 Score=169.51 Aligned_cols=203 Identities=13% Similarity=0.106 Sum_probs=137.0
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.+||||||.|+||+ +|+|++++|+|||+|+++.+.+++ +++|+|++ +.+.+.+++..+ ++++....+
T Consensus 5 ~aiIlA~G~s~R~~------~K~l~~i~Gkpli~~~i~~~~~~~~~~~ivv~~--~~~~i~~~~~~~----g~~~~~~~~ 72 (229)
T 1qwj_A 5 AALVLARGGSKGIP------LKNIKRLAGVPLIGWVLRAALDAGVFQSVWVST--DHDEIENVAKQF----GAQVHRRSS 72 (229)
T ss_dssp EEEEECCSCCSSSS------CTTTSEETTEEHHHHHHHHHHHHTCCSEEEEEE--SCHHHHHHHHHT----TCEEEECCG
T ss_pred EEEEEcCCCCCCCC------CcccceECCEEHHHHHHHHHHhCCCcCEEEEEC--ChHHHHHHHHHc----CCEEEeChh
Confidence 58999999999995 399999999999999999999998 69999998 356676666543 676654332
Q ss_pred C---CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCC
Q 046608 81 T---EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMG 155 (256)
Q Consensus 81 ~---~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~ 155 (256)
. ...+..+++..++..+... +.+++++||+.+ ...++++++.+.+.+++.++.+....++..+.. .+ +..
T Consensus 73 ~~~~~~~~~~~~v~~al~~~~~~--d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~v--~~-~~~ 147 (229)
T 1qwj_A 73 ETSKDSSTSLDAIVEFLNYHNEV--DIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSEI--QK-GVR 147 (229)
T ss_dssp GGSSTTCCHHHHHHHHHTTCTTC--SEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCEECCC--CS-STT
T ss_pred hhcCCCCcHHHHHHHHHHhcCCC--CEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeeccChhHhhc--cc-ccc
Confidence 1 2233347888888887322 279999999944 356899999888777776665554455555533 12 101
Q ss_pred eEeE--Eeec----CCCC--CCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeC-ceEEecCCHHHH
Q 046608 156 KVEK--FVEK----PKNF--VGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLP-GFWMDIGQPKDY 226 (256)
Q Consensus 156 ~v~~--~~ek----~~~~--~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~-~~~~di~t~~d~ 226 (256)
.+.+ +.++ ..+. .....++|+|+++++.| + ..+.....+.++..+ +.|.|||||+||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~n~giY~~~~~~l--~------------~~~~~g~~~~~~~~~~~~~~dIdt~~Dl 213 (229)
T 1qwj_A 148 EVTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLI--E------------MGYLQGGKMAYYEMRAEHSVDIDVDIDW 213 (229)
T ss_dssp CCCCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHH--H------------TTCSSCSSEEEEECCGGGCCCHHHHCSH
T ss_pred ccccccccccccccCCCCCCceEEEeeEEEEEEHHHh--c------------cccccCCeEEEEECCcccccCCCCHHHH
Confidence 1211 1111 1111 22367999999999888 1 111112244332555 589999999999
Q ss_pred HHHHHHHHh
Q 046608 227 ITGLRLYLD 235 (256)
Q Consensus 227 ~~a~~~~~~ 235 (256)
..|+..+..
T Consensus 214 ~~a~~~~~~ 222 (229)
T 1qwj_A 214 PIAEQRVLR 222 (229)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876644
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-23 Score=165.32 Aligned_cols=210 Identities=16% Similarity=0.165 Sum_probs=130.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|.+||||||.|+||++ ..||+|++++|+|||+|+++.+.+++ +++|+|++++..+.+.+ +..++. ..+ .+.
T Consensus 7 ~~aiIlA~G~g~R~~~---~~~K~l~~~~gkpli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~-~~i--~~~- 78 (231)
T 1vgw_A 7 NIALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAFP-QVR--VWK- 78 (231)
T ss_dssp EEEEEECC-------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHCT-TSE--EEC-
T ss_pred eEEEEEcccccccCCC---CCCceEeEECCeEHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcCC-Cce--EEE-
Confidence 4699999999999987 67999999999999999999999986 89999999887666665 544321 123 323
Q ss_pred cCCcCCCcHHHHHHHhhhcCC----CCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCC
Q 046608 80 ETEPLGTAGPLALARDKLIDD----SGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEET 153 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~----~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~ 153 (256)
....|+++++..++..+... ..+.+++++||+.+ + ..++++++.+.+.+. ..+.+.+..++. ...++
T Consensus 79 -~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~-~~~~~~~~~~~~-----~~~~~ 151 (231)
T 1vgw_A 79 -NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAE-GGILAVPVADTL-----KRAES 151 (231)
T ss_dssp -CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTT-CEEEEEECCSCE-----EEESS
T ss_pred -cCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCC-eEEEEeecccce-----EEeCC
Confidence 34668899999999887420 11279999999943 3 448899888765542 334444443331 11233
Q ss_pred CCeEeEEeecCCCCCCCe-EEEEEEEeCHhhHHhcccCC--CCcchhhHHHHHhc-CcEEEEEeCceEEecCCHHHHHHH
Q 046608 154 MGKVEKFVEKPKNFVGNK-INAGIYLLNPSVLDRIELKP--TSIEKEVFPEIAVE-NKLFAMVLPGFWMDIGQPKDYITG 229 (256)
Q Consensus 154 ~~~v~~~~ek~~~~~~~~-~~~Giy~~~~~~~~~l~~~~--~~~~~~~~~~l~~~-~~v~~~~~~~~~~di~t~~d~~~a 229 (256)
|.+....++ ... .....++|+.+.+..+.... ..+ .+....+... .++..+..++.|+|||||+||..|
T Consensus 152 -g~i~~~~~~-----~~~~~~~~p~~f~~~~l~~~~~~~~~~g~-~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a 224 (231)
T 1vgw_A 152 -GQISATVDR-----SGLWQAQTPQLFQAGLLHRALAAENLGGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIV 224 (231)
T ss_dssp -SBEEEEECC-----TTEEEEEEEEEEEHHHHHHHHHC----CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHH
T ss_pred -CceEecCCh-----HHheeeeCCcEecHHHHHHHHHHHhhcCC-CcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHH
Confidence 555543321 222 23348889988766542211 111 2222223222 367777777789999999999999
Q ss_pred HHH
Q 046608 230 LRL 232 (256)
Q Consensus 230 ~~~ 232 (256)
+..
T Consensus 225 ~~~ 227 (231)
T 1vgw_A 225 RLL 227 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=174.33 Aligned_cols=194 Identities=16% Similarity=0.185 Sum_probs=136.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|++||||||. +||++.....||+|++++|+|||+|+++.+..++. +|+|++.. +.+.+++ ++++
T Consensus 3 ~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~pll~~~l~~l~~~~~-~ivvv~~~--~~i~~~~-------~~~~----- 66 (232)
T 2dpw_A 3 PSAIVLAGGK-EAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGL-SPVYVGEN--PGLVPAP-------ALTL----- 66 (232)
T ss_dssp CEEEEECCCB-CSGGGTTTCSBGGGSEETTEETHHHHHHHHHHTTC-EEEEESCC--SSCSSCC-------SEEE-----
T ss_pred eeEEEECCCC-CccccccCCCCceeeEECCEEHHHHHHHHHHhcCC-EEEEEeCh--HHHhhhc-------CeEe-----
Confidence 5899999999 66655444479999999999999999999999988 88887643 2222221 3333
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee--cccchHHHHHHHHhcCCceEEEEEecCCC-cCceeEEEcCCCCeE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGHGGEASIMVTKVDEP-SKYGVVVMEETMGKV 157 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~~~~~~v 157 (256)
....|+++++..+++.++ + ++++++||+. ....++++++ + ..++++++.+.+.+++ ..|+.+. ..|
T Consensus 67 ~~~~g~~~~i~~a~~~~~-~---~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~v 135 (232)
T 2dpw_A 67 PDRGGLLENLEQALEHVE-G---RVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPKEAVEARFPRTK-----RTY 135 (232)
T ss_dssp CCCSSHHHHHHHHHHTCC-S---EEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEHHHHHHHCTTCC-----CCC
T ss_pred cCCCCHHHHHHHHHHHcC-C---CEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeeccchhhhCCCcc-----eeE
Confidence 457799999999999886 3 8999999993 4555888888 5 5556677666653222 2333221 356
Q ss_pred eEEeecCCCCCCCeEEEEEEEeCHhhHHhccc------C----------------------CCCcchhhHHHHHh-c-Cc
Q 046608 158 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL------K----------------------PTSIEKEVFPEIAV-E-NK 207 (256)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~------~----------------------~~~~~~~~~~~l~~-~-~~ 207 (256)
.++.||| .+++|+|+|+++.+..+.+ + ......++++.+.. . .+
T Consensus 136 ~~~~ek~------~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~ 209 (232)
T 2dpw_A 136 ARLREGT------FTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVE 209 (232)
T ss_dssp EEETTEE------EEECSEEEEEHHHHTTTHHHHHHHHHTTTCHHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSC
T ss_pred EEEecCc------eeeeeEEEEcHHHHHHHHHHHHHHHHhccCHHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcE
Confidence 6676665 4889999999988775531 0 11223566655543 2 47
Q ss_pred EEEEEeC--ceEEecCCHHHHH
Q 046608 208 LFAMVLP--GFWMDIGQPKDYI 227 (256)
Q Consensus 208 v~~~~~~--~~~~di~t~~d~~ 227 (256)
+..+..+ +.|+|||||+||.
T Consensus 210 v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 210 ARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp EEEEECSCGGGTCCCCSHHHHC
T ss_pred EEEEecCChhhccCCCChhhcc
Confidence 8888874 4699999999984
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-23 Score=166.37 Aligned_cols=211 Identities=12% Similarity=0.203 Sum_probs=137.0
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~-~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.+||||||.|+||+. ..||+|+|++|+|||+|+++.+.++ ++++|+|++++..+.+.+++.. .++..+.+..
T Consensus 6 ~aiIlAaG~g~R~~~---~~~K~l~~i~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~---~~~~~v~~~~- 78 (228)
T 2yc3_A 6 SVILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEE---SIDVDLSFAI- 78 (228)
T ss_dssp EEEEECCCCC----------CGGGSEETTEEHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTT---TSSSEEEEEC-
T ss_pred EEEEECCccccccCC---CCCccEeEECCEEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHH---hCCCcEEEEC-
Confidence 689999999999973 5799999999999999999999998 7999999998876655544432 2234444443
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-IS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
...|..+++..+++.+..+ .+.+++++||. ++ ...++++++.+.+++ +++++.+..+. +..++++ +.+.
T Consensus 79 -~~~~~~~sv~~al~~~~~~-~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~--~~i~~~~~~~~----~~~~~~~-~~v~ 149 (228)
T 2yc3_A 79 -PGKERQDSVYSGLQEIDVN-SELVCIHDSARPLVNTEDVEKVLKDGSAVG--AAVLGVPAKAT----IKEVNSD-SLVV 149 (228)
T ss_dssp -CCSSHHHHHHHHHTTSCTT-CSEEEEEETTCTTCCHHHHHHHHHHHHHHS--EEEEEEECCSC----CCCBCTT-SCBC
T ss_pred -CCCCHHHHHHHHHHhhccC-CCEEEEecCCCccCCHHHHHHHHHHHHhcC--ceEEEEeccce----EEEEcCC-CceE
Confidence 2367889999999988642 22789999998 33 445889998877654 34545554332 1122443 4555
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHh-cc---cCCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDR-IE---LKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~-l~---~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~ 233 (256)
++.+++ ........|+|+.+.+.. +. .+...+ .+..+.+.+.+ ++..+.....|+|||||+||..|+..+
T Consensus 150 ~~~~~~----~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l 224 (228)
T 2yc3_A 150 KTLDRK----TLWEMQTPQVIKPELLKKGFELVKSEGLEV-TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL 224 (228)
T ss_dssp CCCSCC----CCEEEEEEEEECHHHHHHHHHHHHHHTCCC-CSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred EecCcc----ceEEEeCCcEEEHHHHHHHHHHHHhcCCCc-ccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHH
Confidence 432221 112233489999765543 22 222222 45555555555 676555555799999999999998755
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=158.37 Aligned_cols=184 Identities=22% Similarity=0.293 Sum_probs=121.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|++||||||.|+||++ .||+|++++|+|||+|+++.+.++++++|+|+++++.+.+.+++..... +...+.+. +
T Consensus 1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~~-~~~~~~~~-~ 74 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG----VEKPLIKLCGRCLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAYK-DYKNIVVI-D 74 (196)
T ss_dssp CEEEEEC----CGGGG----SCGGGCEETTEEHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHTT-TTTEEEE---
T ss_pred CEEEEECCCCCCcCCC----CCccEEEECCEEHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhcc-CCCCEEEE-E
Confidence 8999999999999986 6999999999999999999999999999999999988888888876211 11123322 3
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHh-----cCCceEEEEEecCCCcCceeEEEcCC
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRG-----HGGEASIMVTKVDEPSKYGVVVMEET 153 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~v~~~~~ 153 (256)
....|+++++..+++.+ .+ .++++.||+.+ ...++++++.+.+ .+.+..+.+.+..... +.
T Consensus 75 ~~~~g~~~si~~al~~~-~~---~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~- 142 (196)
T 3rsb_A 75 TSGKGYIEDLNECIGYF-SE---PFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKEKYP-------NP- 142 (196)
T ss_dssp ------CCCCCTTTTTC-SS---CEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEETTTCC-------SC-
T ss_pred CCCCCcHHHHHHHHHhC-CC---CEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEccccC-------CC-
Confidence 45778889999999888 33 79999999943 4568999998876 5566666666654322 11
Q ss_pred CCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHH
Q 046608 154 MGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 154 ~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~ 233 (256)
|.... .+...++..++.+. . ......+.+++..+|||||+||..|+..+
T Consensus 143 ----------~~~~~-~~~~~~l~~l~~~~----~----------------~~~~~~~~~~~~~~DIDt~eDl~~ae~ll 191 (196)
T 3rsb_A 143 ----------SIDFN-GLVPADINVVSPKH----G----------------YQKEEIMVIDELIFNINTKDDLKLAEMLL 191 (196)
T ss_dssp ----------SCCSS-SEEEEEEEEECSCS----S----------------CCCEEEEECSSCCEECCSHHHHHHHHHCC
T ss_pred ----------Ceeec-cccceeeEEecCCC----C----------------cceeEEEEecceEEecCCHHHHHHHHHHH
Confidence 11111 24445666666544 0 01112233335678999999999997654
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-21 Score=151.93 Aligned_cols=185 Identities=14% Similarity=0.208 Sum_probs=129.6
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.+||||||.|+||++ ||+|++++|+|||+|+++.+..+++++|+|++++..+.+.+++..+ +++++.. +.
T Consensus 7 ~~iIlA~G~~~R~g~-----~K~l~~~~g~pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~----~~~~~~~-~~ 76 (199)
T 2waw_A 7 TGVVLAAGYSRRLGT-----PKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEVLEKVELD----GLDIVLV-DD 76 (199)
T ss_dssp EEEEEESSCCTTTTS-----CGGGCEETTEEHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSCCT----TSEEEEC-CC
T ss_pred EEEEECCCCCCCCCC-----CEEeCEeCccCHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC----CCEEEEC-CC
Confidence 689999999999964 8999999999999999999999999999999988776666655432 5666553 33
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
...|+++++..+++.+... .+.+++++||+.+ ...++++++. ++++++++... + ++-
T Consensus 77 ~~~g~~~~i~~al~~~~~~-~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~-------------~---g~~-- 135 (199)
T 2waw_A 77 AGLGCSSSLKSALTWVDPT-AEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY-------------A---NGI-- 135 (199)
T ss_dssp CCTTCCCHHHHHHHTSCTT-CSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE-------------T---TEE--
T ss_pred cccCHHHHHHHHHHhhhcc-CCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec-------------C---Ccc--
Confidence 4578999999999988421 1289999999955 4558888876 34444332111 1 210
Q ss_pred EeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcC-cEEEEEeC-ceEEecCCHHHHHHHHHHH
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVEN-KLFAMVLP-GFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~v~~~~~~-~~~~di~t~~d~~~a~~~~ 233 (256)
..-++|+++.+..+...... ......+.+.+ ++..+..+ +.|.|||||+||..++..+
T Consensus 136 --------------~~P~~~~~~~l~~~~~~~~~--~~~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~ 195 (199)
T 2waw_A 136 --------------GHPFWVSRGVFGDLAELHGD--KGVWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASV 195 (199)
T ss_dssp --------------EEEEEEEGGGHHHHHTCSST--TCHHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHH
T ss_pred --------------cCCEEEcHHHHHHHHhcCCC--HHHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHH
Confidence 01247788887776532111 12222222223 67777764 4899999999999998755
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=157.23 Aligned_cols=210 Identities=12% Similarity=0.083 Sum_probs=134.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHH-HHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVM-LNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i-~~~~~~~~~~~~~~v~~~ 78 (256)
|.|||||||.|+||+. ..||+|++++|+|||+|+++.+..++ +++|+|++++....+ .+++. ++..+..
T Consensus 14 ~~aiILAaG~s~Rm~~---~~~K~l~~i~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-----~~~~~~~- 84 (234)
T 1vpa_A 14 NVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF-----HEKVLGI- 84 (234)
T ss_dssp EEEEEEECCCCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC-----CTTEEEE-
T ss_pred CeEEEEcCcchhhcCC---CCCceEEEECCeEHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc-----cCCceEE-
Confidence 5799999999999974 56999999999999999999999998 899999998765432 32221 1222221
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-cc-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SE-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
...+.+..+++..++..+.....+.+++++||+. .. ..++++++.+...+ +.+.+.+..++ ....+.+ |
T Consensus 85 -~~gg~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~--~~i~~~~~~~~----~~~~~~~-g- 155 (234)
T 1vpa_A 85 -VEGGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETG--AATLALKNSDA----LVRVEND-R- 155 (234)
T ss_dssp -EECCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHS--EEEEEEECCSE----EEEEETT-E-
T ss_pred -eCCCCcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcC--CEEEEEecCCc----EEEECCC-C-
Confidence 1223346678999998884311127888899994 33 45888888776543 34444444332 2223555 5
Q ss_pred EeEEeecCCCCCCCeE-EEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKI-NAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~-~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
+ .+.++. ... .-...+|+.+.+..+...... ..+....+...+ ++..+..++.|+|||||+||..|++.+.
T Consensus 156 v-~~~~r~-----~~~~~~~p~~f~~~~l~~~~~~~~~-~~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~ 228 (234)
T 1vpa_A 156 I-EYIPRK-----GVYRILTPQAFSYEILKKAHENGGE-WADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAR 228 (234)
T ss_dssp E-EEECCT-----TEEEEEEEEEEEHHHHHHHHTTCCC-CSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHH
T ss_pred c-ccCChh-----HeeeecCCccccHHHHHHHHHhcCC-CCcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHh
Confidence 5 554421 222 113447787776655332221 123333333333 6767776668999999999999987654
Q ss_pred h
Q 046608 235 D 235 (256)
Q Consensus 235 ~ 235 (256)
.
T Consensus 229 ~ 229 (234)
T 1vpa_A 229 E 229 (234)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=151.11 Aligned_cols=184 Identities=14% Similarity=0.202 Sum_probs=125.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+ .||+|++++|+|||+|+++.+.++++++|+|++++..+.+.+++..+ +++++.. +
T Consensus 6 ~~~iIlA~G~~~R~g-----~~K~l~~~~g~pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~----~~~~~~~-~ 75 (197)
T 2wee_A 6 ITGVVLAAGRSNRLG-----TPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVRAAMALD----GTDVVVV-E 75 (197)
T ss_dssp EEEEEEECCCCTTTS-----SCGGGSEETTEEHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCCT----TSEEEEC-C
T ss_pred eEEEEECCCCcccCC-----CCeEcCeeCCccHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhccC----CCEEEEC-C
Confidence 368999999999995 48999999999999999999999999999999988776666655432 5666543 2
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|+++++..+++.+... .+.+++++||+.+ ...++++++. +.++++++... + ++.
T Consensus 76 ~~~~g~~~~i~~al~~~~~~-~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~~~-------------~---g~~- 135 (197)
T 2wee_A 76 DVERGCAASLRVALARVHPR-ATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVCRY-------------A---DGV- 135 (197)
T ss_dssp ----CCHHHHHHHHTTSCTT-EEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEEEE-------------T---TEE-
T ss_pred CcccCHHHHHHHHHHHhccc-CCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEEec-------------C---CCc-
Confidence 23568999999999988411 1279999999944 3457888876 33333322110 1 211
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhc-C-cEEEEEeC-ceEEecCCHHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVE-N-KLFAMVLP-GFWMDIGQPKDYITGLRL 232 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~-~v~~~~~~-~~~~di~t~~d~~~a~~~ 232 (256)
. .-.+|+++.+..+.... - ..-+..++.. + ++..+..+ +.|.|||||+||..++..
T Consensus 136 ---~------------~P~~~~~~~l~~l~~~~--~-~~~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~~ 194 (197)
T 2wee_A 136 ---G------------HPFWFSRTVFGELARLH--G-DKGVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLES 194 (197)
T ss_dssp ---E------------EEEEEEGGGHHHHHTCC--S-TTHHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHTC
T ss_pred ---C------------CCEEECHHHHHHHHhCC--C-ChhHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHH
Confidence 0 01377788877765211 1 1122333333 3 57777763 589999999999988653
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=156.16 Aligned_cols=215 Identities=15% Similarity=0.130 Sum_probs=134.9
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|.+||||||.|+||+. ..||+|++++|+|||+|+++.+.+++ +++|+|++++..+.+.+ +..++. ..+.+ ..
T Consensus 8 ~~~iIlA~G~g~R~~~---~~~K~l~~i~g~pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~~-~~v~~--~~ 80 (236)
T 1i52_A 8 VCAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPLANH-PQITV--VD 80 (236)
T ss_dssp EEEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGGGGC-TTEEE--EE
T ss_pred eeEEEECCcCccccCC---CCCcceeeECCEEHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHhcCC-CCEEE--EC
Confidence 4789999999999973 57999999999999999999999987 89999999876555544 333211 02322 22
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKV 157 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (256)
...|..+++..++..+... +.+++++||+.+ + ..++++++.+.+.+..+ +.+.+..+. ....+++.+.+
T Consensus 81 --~~~g~~~~i~~al~~~~~~--~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~i 151 (236)
T 1i52_A 81 --GGDERADSVLAGLKAAGDA--QWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPVRDT----MKRAEPGKNAI 151 (236)
T ss_dssp --CCSSHHHHHHHHHHTSTTC--SEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EEEEECCSC----EEEECTTSSSE
T ss_pred --CCCCHHHHHHHHHHhcCCC--CEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EEEEecccc----EEEEcCCCCce
Confidence 2357889999999888522 279999999943 4 34788887765554233 333343332 11123221344
Q ss_pred eEEeecCCCCCCCeEEEEEEEeCHhhHHhcc----cCCCCcchhhHHHHHhc-CcEEEEEeCceEEecCCHHHHHHHHHH
Q 046608 158 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIE----LKPTSIEKEVFPEIAVE-NKLFAMVLPGFWMDIGQPKDYITGLRL 232 (256)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~----~~~~~~~~~~~~~l~~~-~~v~~~~~~~~~~di~t~~d~~~a~~~ 232 (256)
....+ ..+-+..-+.++|+.+.+..+. .....+ .+....+... .++..+..++.|+|||||+||..|+..
T Consensus 152 ~~~~~----~~~i~~~~~p~~f~~~~l~~~~~~~~~~g~~~-td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~ 226 (236)
T 1i52_A 152 AHTVD----RNGLWHALTPQFFPRELLHDCLTRALNEGATI-TDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFY 226 (236)
T ss_dssp EEEEC----CTTCEEEEEEEEEEHHHHHHHHHHHHHTTCCC-CSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred eeccC----hHhheeeeCCceecHHHHHHHHHHHHhcCCCc-ccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHH
Confidence 43321 1111222256677776554321 122222 2222223222 377778877789999999999999887
Q ss_pred HHhh
Q 046608 233 YLDF 236 (256)
Q Consensus 233 ~~~~ 236 (256)
+..+
T Consensus 227 ~~~~ 230 (236)
T 1i52_A 227 LTRT 230 (236)
T ss_dssp HCC-
T ss_pred HHHh
Confidence 6443
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=153.41 Aligned_cols=209 Identities=18% Similarity=0.168 Sum_probs=144.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHHhhhhccCcEEEeec
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
.+||||||.|+||+. ..||+|++++|+|||+|+++.+.+++ +++|+|+++++. +.+.+.+.. ++.+. .
T Consensus 9 ~aIIlAaG~g~Rmg~---~~~K~l~~l~Gkpll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-----~v~~v--~ 78 (231)
T 3q80_A 9 VAIVPAAGSGERLAV---GVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH-----RAMIV--A 78 (231)
T ss_dssp EEEEECCCCCTTTCS---SSCGGGCEETTEEHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG-----GCEEE--E
T ss_pred EEEEECCCCCccCCC---CCCceEEEECCeEHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC-----CeEEE--c
Confidence 589999999999975 67999999999999999999999985 899999998775 445544432 34333 2
Q ss_pred cCCcCCCcHHHHHHHhhhcCC-CCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 80 ETEPLGTAGPLALARDKLIDD-SGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~-~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
.+.+..+++..++..+... ..+.+++++||..+ ...++++++.+.+ +.++++.+.+..++-.+ .+++ |.
T Consensus 79 --gg~~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~p~~dt~~~----~~~~-g~ 150 (231)
T 3q80_A 79 --GGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVLPLSDTIKA----VDAN-GV 150 (231)
T ss_dssp --CCSSHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEECCSSCEEE----ECTT-SB
T ss_pred --CCCchHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEEeccCCEEE----EcCC-Cc
Confidence 2234568999999998752 12389999999944 3458899888765 24577777777665433 3555 77
Q ss_pred EeEEeecCCCCCCCeEEE-EEEEeCHhhHHhcc----cC-CCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINA-GIYLLNPSVLDRIE----LK-PTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITG 229 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~-Giy~~~~~~~~~l~----~~-~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a 229 (256)
|.++.+. +.++.+ ..++|+.+.+.... .+ ......|....+...| ++..++-+..++.|+||+||..|
T Consensus 151 v~~~~~r-----~~l~~~qTPq~F~~~~L~~a~~~~~~~n~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~a 225 (231)
T 3q80_A 151 VLGTPER-----AGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLA 225 (231)
T ss_dssp EEECCCG-----GGEEEECSCEEEEHHHHHHHHHHHTC-----CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHH
T ss_pred EEEecch-----hheEEEcCCcEEEHHHHHHHHHHHHhhcCCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHH
Confidence 7666432 222211 25788877766442 11 1122356666666656 78777776678999999999999
Q ss_pred HHHH
Q 046608 230 LRLY 233 (256)
Q Consensus 230 ~~~~ 233 (256)
+..+
T Consensus 226 e~~l 229 (231)
T 3q80_A 226 QAIV 229 (231)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-21 Score=154.99 Aligned_cols=198 Identities=15% Similarity=0.093 Sum_probs=122.3
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.+||||||.|+||++ . ||+|++++|+|||+|+++. ..++++|+|++++. +.+ +.. .++.+ ..
T Consensus 27 ~aiILAgG~s~Rm~~---~-~K~l~~i~gkpli~~~l~~--~~~~~~ivvv~~~~---~~~-~~~----~~v~~--~~-- 88 (236)
T 2px7_A 27 SVLIPAAGNGLRLGR---G-PKAFLQVGGRTLLEWTLAA--FRDAAEVLVALPPG---AEP-PKG----LGAVF--LE-- 88 (236)
T ss_dssp EEEEECCC----------C-CGGGCBCSSSBHHHHHHHH--TTTCSEEEEEECTT---CCC-CTT----CSCEE--EE--
T ss_pred EEEEEcCCCCccCCC---C-CCeEEEECCEEHHHHHHHh--cCCCCeEEEEeCHH---HHH-hhc----CCcEE--Ee--
Confidence 399999999999985 4 8999999999999999999 66799999999761 211 211 13433 22
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-cc-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SE-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
...|...++..++..+..+ .+++++||+. ++ ..+.++++.+.+.+ +.+.+.+..++..+ .+ + |++..
T Consensus 89 ~~~~~~~~i~~al~~~~~~---~vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~~----~~-~-G~v~~ 157 (236)
T 2px7_A 89 GGATRQASVARLLEAASLP---LVLVHDVARPFVSRGLVARVLEAAQRSG--AAVPVLPVPDTLMA----PE-G-EAYGR 157 (236)
T ss_dssp CCSSHHHHHHHHHHHCCSS---EEEECCTTCCCCCHHHHHHHHHHHHHHS--EEEEEEECCSEEEE----EC-S-SSCEE
T ss_pred CCCchHHHHHHHHHHcCCC---eEEEecCccccCCHHHHHHHHHHHHhcC--CeEEEEecCCcEEE----ec-C-CeEEe
Confidence 2346788999999888643 7999999984 34 44888888776553 44444444332211 13 4 67766
Q ss_pred EeecCCCCCCCeEEEEEEEeCHhhHHhcc----cCCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHH
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPSVLDRIE----LKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~~~~~l~----~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~ 233 (256)
+.++.. -......++|+++.+..+. .....+ .+....+...+ ++..+..++.|+|||||+||..|+..+
T Consensus 158 ~~~~~~----~~~~~~~~~f~~~~l~~~~~~~~~~g~~~-~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 231 (236)
T 2px7_A 158 VVPREA----FRLVQTPQGFFTALLREAHAYARRKGLEA-SDDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALA 231 (236)
T ss_dssp EECGGG----CEEECSCEEEEHHHHHHHHHHHHHHTCCC-SSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred cCChHh----hccccCCeEEcHHHHHHHHHHHHhcCCCc-hhHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHH
Confidence 654321 0111124577776554321 111222 22333333333 677888877899999999999998765
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-19 Score=138.41 Aligned_cols=179 Identities=17% Similarity=0.174 Sum_probs=120.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+. ||+|++++|+|||+|+++.+..+ +|+||+++ .+.+..+. ..++++++...
T Consensus 1 m~aiILAgG~s~Rmg~-----~K~ll~~~G~pli~~~~~~l~~~---~vvvv~~~-~~~~~~~~----~~~~~~~v~d~- 66 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIGM-----EKTEVMLCGKKLIEWVLEKYSPF---QTVFVCRD-EKQAEKLS----SRYEAEFIWDL- 66 (208)
T ss_dssp CEEEEECCCCCTTTTS-----CGGGCEETTEEHHHHHHHHHTTS---EEEEECSS-HHHHHHHH----TTSCSCEECCT-
T ss_pred CEEEEECCCchhhCCC-----CCcccEECCeeHHHHHHHHhcCC---CEEEEECC-HHHHHHHH----HhcCCeEEecC-
Confidence 8999999999999963 89999999999999999999987 89998864 33333222 22366665433
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-cc-chHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EY-PLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|...++..++..+ .+ .+ +++||+.+ +. .++++++.+.+.+.++++.. + |+
T Consensus 67 ~~~~G~~~si~~gl~~~-~~---~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~---~--------------g~-- 122 (208)
T 3ngw_A 67 HKGVGSIAGIHAALRHF-GS---CV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALIPK---H--------------DY-- 122 (208)
T ss_dssp TCCCSHHHHHHHHHHHH-SS---EE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEEEE---S--------------SS--
T ss_pred CCCCChHHHHHHHHHHc-CC---CE-EEECCccCCCHHHHHHHHHHhhcCCCCEEEEc---C--------------CC--
Confidence 33457889999999999 43 68 99999944 43 47888887765555544322 1 10
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcc----cCCCCcchhhHHHHHhcCcEEEEEeC---------ceEEecCCHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIE----LKPTSIEKEVFPEIAVENKLFAMVLP---------GFWMDIGQPKD 225 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~----~~~~~~~~~~~~~l~~~~~v~~~~~~---------~~~~di~t~~d 225 (256)
..|- +.+++++.+..+. .+.... ..+++...+..+... +.|+|||||+|
T Consensus 123 ---~~Pl----------~al~~~~~~~~l~~~l~~G~~~~-----~~~l~~~~~~~v~~~~~~~~d~~~~~~~ninTpeD 184 (208)
T 3ngw_A 123 ---PEPL----------LAYYAESAADELERAILQGIRKI-----LVPLERLNVVYYPVEKLRKFDKELISFFNINTPDD 184 (208)
T ss_dssp ---BCTT----------EEEECGGGHHHHHHHHHTTCCCT-----HHHHHTSCEEEEEGGGGTTTCTTCGGGCCCCSHHH
T ss_pred ---eeEE----------EEEEcHHHHHHHHHHHHcCCCCH-----HHHHHhCCEEEecHHHhcccCcccceEEecCCHHH
Confidence 0111 2356666655442 222222 233333455566653 35899999999
Q ss_pred HHHHHHHHHh
Q 046608 226 YITGLRLYLD 235 (256)
Q Consensus 226 ~~~a~~~~~~ 235 (256)
|..+++.+.+
T Consensus 185 l~~~~~~~~~ 194 (208)
T 3ngw_A 185 LKRAEEICSK 194 (208)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999877654
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.9e-20 Score=143.95 Aligned_cols=173 Identities=17% Similarity=0.151 Sum_probs=113.3
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.+||||||.|+||+ .||+|++++|+|||+|+++.+..+ +++|+|++++... +.+. +++++.. +.
T Consensus 16 ~~iILA~G~g~Rmg-----~~K~ll~i~g~pll~~~l~~l~~~-~~~i~vv~~~~~~---~~~~------~~~~v~~-~~ 79 (201)
T 2e8b_A 16 TCYVLAGGKSKRFG-----EDKLLYEIKGKKVIERVYETAKSV-FKEVYIVAKDREK---FSFL------NAPVVLD-EF 79 (201)
T ss_dssp EEEEEEESSCCCCS-----TTHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEESCSGG---GGGG------TCCEEEC-CC
T ss_pred eEEEECCCCCccCC-----CCcccceECceEHHHHHHHHHHHh-CCEEEEEeCcHHH---hhcC------CceEEec-CC
Confidence 69999999999997 489999999999999999999998 8999999987654 1111 4555433 33
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-cc-chHH-HHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EY-PLKQ-MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~-~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
...|+++++..+++.++.+ .+++++||+.+ +. .+++ ++ . .++++. . . + ++
T Consensus 80 ~~~g~~~~i~~al~~~~~~---~~lv~~~D~P~i~~~~i~~~l~----~--~~~~v~-------------~-~-~-g~-- 132 (201)
T 2e8b_A 80 EESASIIGLYTALKHAKEE---NVFVLSGDLPLMKKETVLYVLE----N--FKEPVS-------------V-A-K-TE-- 132 (201)
T ss_dssp SSCCHHHHHHHHHHHCSSS---EEEEEETTCTTCCHHHHHHHHH----T--CCSSEE-------------E-E-E-SS--
T ss_pred CCCCcHHHHHHHHHHcCCC---CEEEEeCCcCcCCHHHHHHHHh----c--CCEEEE-------------e-c-C-Cc--
Confidence 4679999999999988654 89999999954 43 3555 55 1 222110 0 0 1 21
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhccc---CCCCcchhhHHHHHhcCcEEEEEeC--ceEE--ecCCHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIEL---KPTSIEKEVFPEIAVENKLFAMVLP--GFWM--DIGQPKDYITGLR 231 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~---~~~~~~~~~~~~l~~~~~v~~~~~~--~~~~--di~t~~d~~~a~~ 231 (256)
....+|+| |+++.+..+.. .......++++.+ .+..+.+. +.|+ |||||+||.++++
T Consensus 133 -----------~~p~~giy-~~~~~~~~l~~~~~~g~~~~~~~l~~~----~~~~~~~~~~~~~~~~dintpedl~~~~~ 196 (201)
T 2e8b_A 133 -----------KLHTLVGV-YSKKLLEKIEERIKKGDYRIWALLKDV----GYNEVEIPEELRYTLLNMNTKEDLKRILA 196 (201)
T ss_dssp -----------SEEEEEEE-EEGGGHHHHHHHHHTTCCCHHHHHHHH----CCEEEECCGGGGGGGCCSCCC--------
T ss_pred -----------eeeEEEEE-eChhHHHHHHHHHHcCCchHHHHHHHC----CeEEeccccccchhhcCCCCHHHHHHHHH
Confidence 24578999 99988776642 2222224555442 45556654 4789 9999999998876
Q ss_pred HH
Q 046608 232 LY 233 (256)
Q Consensus 232 ~~ 233 (256)
.+
T Consensus 197 ~~ 198 (201)
T 2e8b_A 197 IE 198 (201)
T ss_dssp --
T ss_pred Hh
Confidence 43
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=146.14 Aligned_cols=181 Identities=19% Similarity=0.221 Sum_probs=112.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+. ||+|++++|+|||+|+++.+..+ +++|++++..+.+.+++. .++ ++...
T Consensus 3 ~~~iIlAgG~g~Rmg~-----~K~l~~i~g~pll~~~l~~l~~~---~ivvv~~~~~~~~~~~~~-----~~~-~v~~~- 67 (197)
T 3d5n_A 3 IGVIILAAGEGKRFGG-----DKLLAKIDNTPIIMRTIRIYGDL---EKIIIVGKYVNEMLPLLM-----DQI-VIYNP- 67 (197)
T ss_dssp EEEEEECSCCTTCCCS-----SGGGSBSSSSBHHHHHHHHTTTS---BCCEEECTTHHHHGGGCT-----TSC-EEECT-
T ss_pred eEEEEECCcCcccCCC-----CeeeCEeCceEHHHHHHHHHHhC---CEEEEECCCHHHHHHHhc-----CCE-EEECC-
Confidence 3689999999999975 89999999999999999999877 888888877555444332 256 44333
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-cc-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SE-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|+++++..+++.+...+ .+++++||+. .+ ..++++++.+ +.+.+.++... + ++
T Consensus 68 ~~~~G~~~si~~al~~~~~~~--~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~-------------~---g~-- 126 (197)
T 3d5n_A 68 FWNEGISTSLKLGLRFFKDYD--AVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH-------------K---GE-- 126 (197)
T ss_dssp TGGGCHHHHHHHHHHHTTTSS--EEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE-------------T---TE--
T ss_pred CCCCCHHHHHHHHHHhhccCC--cEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe-------------C---Cc--
Confidence 234689999999999986422 7999999994 34 3477887765 34443332211 1 11
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcC-cEEEEEeC--ceEEecCCHHHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVEN-KLFAMVLP--GFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~v~~~~~~--~~~~di~t~~d~~~a~~~~ 233 (256)
+..+ .+|+++.+..+..-. -...+...+.+.+ .+..+..+ +.|+|||||+||..++..+
T Consensus 127 -----~~~P---------~~~~~~~l~~l~~l~--g~~~~~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~ 188 (197)
T 3d5n_A 127 -----RGNP---------VLISKSLFNEIEKLR--GDVGARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFH 188 (197)
T ss_dssp -----ECSC---------EEEEHHHHHHHHHCC--TTCCTHHHHTTSCGGGEEEEECCGGGTCCTTTC----------
T ss_pred -----ccCC---------EEECHHHHHHHHccC--CCccHHHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHHHhh
Confidence 0111 267777777664211 1122322232323 46666664 3689999999999887654
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-19 Score=153.56 Aligned_cols=224 Identities=17% Similarity=0.256 Sum_probs=154.0
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeC-CcchHHHHHHHHHHc----CCC-EEEEEcc-CChHHHHHHHHhhhhccCc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFA-NKPMILHQIEALKAV----GVT-EVVLAIN-YQPEVMLNFLKEFEKKLEI 73 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~-g~pli~~~l~~l~~~----~i~-~i~vv~~-~~~~~i~~~~~~~~~~~~~ 73 (256)
|.+||||||.||||+. ..||+|+|++ |+|||+++++++... |.. .++|+++ +..+.+.++++++ ..+++
T Consensus 93 ~avViLAGG~GTRmgs---~~PK~l~~V~~gk~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~-~~fg~ 168 (488)
T 2i5k_A 93 LAVLKLNGGLGTSMGC---VGPKSVIEVREGNTFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKY-SANRI 168 (488)
T ss_dssp EEEEEECCCBSGGGTC---CSBSTTSCCBTTBCHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGG-CSSSC
T ss_pred ceEEEEcCCCcccCCC---CCCccccccCCCCcHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhc-cccCc
Confidence 3579999999999986 7899999998 999999999998877 422 3556565 8889999999874 44577
Q ss_pred EEEeeccC------------------------CcCCCcHHHHHH-----HhhhcCCCCCcEEEEeCCeecc-cchHHHHH
Q 046608 74 KITCSQET------------------------EPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVISE-YPLKQMIE 123 (256)
Q Consensus 74 ~v~~~~~~------------------------~~~g~~~s~~~~-----~~~i~~~~~~~~lv~~~D~~~~-~~~~~~~~ 123 (256)
++.+..|. .+.|+++++... ++.+.....++++|+++|++.. .++. ++.
T Consensus 169 ~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL~~~~d~~-~L~ 247 (488)
T 2i5k_A 169 RIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLK-ILN 247 (488)
T ss_dssp EEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBSSCCCCHH-HHH
T ss_pred eEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcCCCcccHH-HHH
Confidence 77766554 788999988732 4555322223899999999664 4565 568
Q ss_pred HHHhcCCceEEEEEecCCCcC-ceeEEEcCCCCe--EeEEeecCCCC--------CCCeEEEEEEEeCHhhHHhcccC-C
Q 046608 124 FHRGHGGEASIMVTKVDEPSK-YGVVVMEETMGK--VEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRIELK-P 191 (256)
Q Consensus 124 ~~~~~~~~~~i~~~~~~~~~~-~~~v~~~~~~~~--v~~~~ek~~~~--------~~~~~~~Giy~~~~~~~~~l~~~-~ 191 (256)
++..+++++++.+++..++.. ||.+..++ |+ +.++.+.+... .-..+|+|+|+|+.+++..+... .
T Consensus 248 ~~~~~~a~~t~~v~~~~~p~~~yG~Iv~~d--G~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f~~~~L~~~l~~~~ 325 (488)
T 2i5k_A 248 HMIETGAEYIMELTDKTRADVKGGTLISYD--GQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSN 325 (488)
T ss_dssp HHHHSCCSEEEEEEECCGGGSSSCEEEEET--TEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEEEHHHHHHHHHTTC
T ss_pred HHHhcCCcEEEEEEEecCCCCceeEEEEEC--CcEEEEEeccCCHHHHhhcccccccCEEEEEEEEEeHHHHHHHHhhcc
Confidence 888899999999988877765 99887653 55 33443433321 12478999999999888765321 0
Q ss_pred ---------------------CCcc---hhhHHHHHhcCcEEEEEeC-ceEEecCCHHHHHHHHHHHH
Q 046608 192 ---------------------TSIE---KEVFPEIAVENKLFAMVLP-GFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 192 ---------------------~~~~---~~~~~~l~~~~~v~~~~~~-~~~~di~t~~d~~~a~~~~~ 234 (256)
..+| .++++.+ + ...++.+. ..|..+-+..|++.++..++
T Consensus 326 ~~lp~~v~~K~i~~~~~~~~~~qlE~~~~d~~~~~-~--~~~~~~V~R~~F~PvKn~~~ll~~~~~~~ 390 (488)
T 2i5k_A 326 LEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF-D--GAHGVVVPRSRFLPVKTCSDLLLVKSDLF 390 (488)
T ss_dssp CCCCCBCCEECCCC-----CEECCBCCGGGGGGGS-S--SCEEEEECGGGCCBCCSHHHHHHHTSTTE
T ss_pred CCCcceecCccccCCCCCCceEEeeehhhhHHhhc-c--CceEEEecccccccccCCccHHHHHHHHH
Confidence 0111 2333333 1 22233332 26889999988877766543
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-19 Score=139.38 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=83.9
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+. .||+|++++|+|||+|+++.+.. ++++|+|++++..+.+ .. .+++++....
T Consensus 7 ~~~iILAgG~s~Rmg~----~~K~ll~i~G~pli~~~l~~l~~-~~~~ivvv~~~~~~~~----~~----~~~~~v~~~~ 73 (201)
T 1e5k_A 7 ITGVVLAGGKARRMGG----VDKGLLELNGKPLWQHVADALMT-QLSHVVVNANRHQEIY----QA----SGLKVIEDSL 73 (201)
T ss_dssp EEEEEECCCCCSSSCS----SCGGGSEETTEEHHHHHHHHHHH-HCSCEEEECSSSHHHH----HT----TSCCEECCCT
T ss_pred ceEEEEcCCCCCcCCC----CCCceeeECceeHHHHHHHHHHh-hCCEEEEEcCCcHHHH----hh----cCCeEEecCC
Confidence 3689999999999972 58999999999999999999985 4899999998765332 22 2566554333
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ecc-cchHHHHHH
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-ISE-YPLKQMIEF 124 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~~-~~~~~~~~~ 124 (256)
+...|++.++..+++.++.+ .+++++||+ +.. ..++++++.
T Consensus 74 ~~~~G~~~si~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 74 ADYPGPLAGMLSVMQQEAGE---WFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp TCCCSHHHHHHHHHHHCCSS---EEEEEETTCTTCCTTHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCCC---cEEEEeCCcCcCCHHHHHHHHhh
Confidence 33378999999999998654 899999999 334 347788775
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-19 Score=148.73 Aligned_cols=194 Identities=14% Similarity=0.131 Sum_probs=125.1
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHH-cCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~-~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.+||||||.|+||+. ..||+|++++|+|||+|+++.+.+ .++++|+|+++ ..+.+.+++. +++++
T Consensus 5 ~aIILAaG~ssRmg~---~~pK~ll~l~GkPLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~~------~v~~v---- 70 (371)
T 1w55_A 5 SLIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFTK------NYEFI---- 70 (371)
T ss_dssp EEEEECCSCCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTCS------SSEEE----
T ss_pred EEEEECCCCCccCCC---CCCcceEEECCeEHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHhC------CCEEE----
Confidence 589999999999974 579999999999999999999998 46899999998 4443333221 23333
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
..+.|...++..+++.+..+ .+++++||+.+ + ..++++++.+.+. ++++.+.+..++..+.....+. ..+.
T Consensus 71 ~~g~g~~~sv~~aL~~l~~d---~vlv~~~D~Pli~~~~i~~li~~~~~~--~a~i~~~~~~d~vk~v~~t~~r--~~l~ 143 (371)
T 1w55_A 71 EGGDTRAESLKKALELIDSE---FVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALKVADTTLFDNEALQR--EKIK 143 (371)
T ss_dssp ECCSSHHHHHHHHHTTCCSS---EEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEECCCSCEEETTEEECG--GGCC
T ss_pred eCCCChHHHHHHHHHhcCCC---eEEEEeCCcccCCHHHHHHHHHHHHhc--CCEEEEEEeecCeeeeeeecCc--ccee
Confidence 23456779999999988643 89999999943 3 4488888766554 3444444443321110000010 1111
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
.. . ..+.|+.+.+..+...... ..+....+...+ ++..++.++.|+|||||+||..|+
T Consensus 144 ~~-~------------~P~~f~~~~l~~~~~~~~~-~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae 202 (371)
T 1w55_A 144 LI-Q------------TPQISKTKLLKKALDQNLE-FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD 202 (371)
T ss_dssp EE-C------------SCEEEEHHHHHHHTSSCCC-CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred ec-C------------CcceecHHHHHHHHHhccc-ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH
Confidence 11 0 0246777766554322111 233333333334 777777666899999999999987
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-17 Score=143.55 Aligned_cols=183 Identities=20% Similarity=0.256 Sum_probs=135.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCcccee---CCcchHHHHHHHHHH--------cC----CCEEEEEccCChHHHHHHHH
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKA--------VG----VTEVVLAINYQPEVMLNFLK 65 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i---~g~pli~~~l~~l~~--------~~----i~~i~vv~~~~~~~i~~~~~ 65 (256)
|.+||||||.||||+. ..||+|+|+ .|+|+|+++++++.. .| +..+++.+.+..+.+.++++
T Consensus 103 vavViLAGG~GTRLg~---~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~~f~ 179 (505)
T 1jv1_A 103 VAVLLLAGGQGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFT 179 (505)
T ss_dssp EEEEEECCCCCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHH
T ss_pred eEEEEEcCCccccCCC---CCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHHHHH
Confidence 5789999999999975 789999999 799999999999877 25 77777777777889999998
Q ss_pred hhhhccCc---EEEeecc---------------------CCcCCCcHHHHHHHh-----hhcCCCCCcEEEEeCCee-cc
Q 046608 66 EFEKKLEI---KITCSQE---------------------TEPLGTAGPLALARD-----KLIDDSGEPFFVLNSDVI-SE 115 (256)
Q Consensus 66 ~~~~~~~~---~v~~~~~---------------------~~~~g~~~s~~~~~~-----~i~~~~~~~~lv~~~D~~-~~ 115 (256)
+. +.+++ ++.+..| +.+.|+++.+..+.. .+...+.++++|+.+|++ ..
T Consensus 180 ~~-~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~Dn~L~~ 258 (505)
T 1jv1_A 180 KH-KYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVK 258 (505)
T ss_dssp HT-GGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCC
T ss_pred hh-hhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECCccccc
Confidence 73 34455 2544332 367888887765542 332222228999999996 65
Q ss_pred cchHHHHHHHHhcCCceEEEEEe-cCCCcCceeEEEcCCCCeEeEEeecCCC----------CCCCeEEEEEEEeCHhhH
Q 046608 116 YPLKQMIEFHRGHGGEASIMVTK-VDEPSKYGVVVMEETMGKVEKFVEKPKN----------FVGNKINAGIYLLNPSVL 184 (256)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~v~~~~~~~~v~~~~ek~~~----------~~~~~~~~Giy~~~~~~~ 184 (256)
.....++..+..+++++++.+++ ...+..+|.+..+++..+|.++.++|.. ...+..|+|+|+|+.+++
T Consensus 259 ~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~dg~~~vvEy~E~p~~~~~~~~~~g~~~~~~~N~~~~~f~l~~L 338 (505)
T 1jv1_A 259 VADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFL 338 (505)
T ss_dssp TTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEEEHHHH
T ss_pred cchHHHHHHHHHcCCCEEEEEEEccCCccCcceEEEECCeEEEEEEeeCCHHHhhhcccccccccceeeEEEEEecHHHH
Confidence 55678889999999999998886 5677889988775321234666666541 113589999999999988
Q ss_pred Hhc
Q 046608 185 DRI 187 (256)
Q Consensus 185 ~~l 187 (256)
+.+
T Consensus 339 ~~i 341 (505)
T 1jv1_A 339 RDV 341 (505)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=126.68 Aligned_cols=226 Identities=16% Similarity=0.156 Sum_probs=149.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeC-CcchHHHHHHHHHHcC------CCEEEEEccCChHHHHHHHH-hhhhccC
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFA-NKPMILHQIEALKAVG------VTEVVLAINYQPEVMLNFLK-EFEKKLE 72 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~-g~pli~~~l~~l~~~~------i~~i~vv~~~~~~~i~~~~~-~~~~~~~ 72 (256)
+.+|+||||.||||+. ..||+|+|++ |+|+|+++++++...+ +.-+++.+.+..+.+.++++ +. +.++
T Consensus 76 ~avViLAGGlGTRLg~---~~PK~llpV~~gk~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~-~~fG 151 (505)
T 2oeg_A 76 TVVLKLNGGLGTGMGL---CDAKTLLEVKDGKTFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARY-PWLY 151 (505)
T ss_dssp EEEEEEECCCCGGGTC---CSCGGGSEEETTEEHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHC-HHHH
T ss_pred ceEEEEcCCcccccCC---CCCCcccccCCCCcHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhh-hccC
Confidence 3589999999999985 8899999999 9999999999998875 33444444555888999998 52 2234
Q ss_pred c---EEE-e---------------e-------ccCCcCCCcHHHHHH-----HhhhcCCCCCcEEEEeCCeecc-cchHH
Q 046608 73 I---KIT-C---------------S-------QETEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVISE-YPLKQ 120 (256)
Q Consensus 73 ~---~v~-~---------------~-------~~~~~~g~~~s~~~~-----~~~i~~~~~~~~lv~~~D~~~~-~~~~~ 120 (256)
+ ++. + . .++.+.|+++.+... ++.+...+.++++|..+|++.. .|. .
T Consensus 152 l~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~-~ 230 (505)
T 2oeg_A 152 QVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK-R 230 (505)
T ss_dssp TTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH-H
T ss_pred CCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH-H
Confidence 3 222 1 1 223466998888644 3444322223899999999763 456 8
Q ss_pred HHHHHHhcCCceEEEEEecCCC-cCceeEEEc------CCCCe---------EeEEeecCCCC--------CCCeEEEEE
Q 046608 121 MIEFHRGHGGEASIMVTKVDEP-SKYGVVVME------ETMGK---------VEKFVEKPKNF--------VGNKINAGI 176 (256)
Q Consensus 121 ~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~------~~~~~---------v~~~~ek~~~~--------~~~~~~~Gi 176 (256)
++..+..+++++++.+++...+ ..+|++... .+ |+ +.++.+-|... .-.+.|+..
T Consensus 231 llg~~~~~~ad~~~~v~~k~~~d~~~Gvl~~~~~~~~~~d-g~~nvEyn~~~llEyse~p~e~~~~~~g~~~f~~~Ninn 309 (505)
T 2oeg_A 231 VLAYMEKEKIDFLMEVCRRTESDKKGGHLARQTVYVKGKD-GQPDAEKRVLLLRESAQCPKADMESFQDINKYSFFNTNN 309 (505)
T ss_dssp HHHHHHHHTCSEEEEEEECCTTCCSSEEEEEEEEEECCSS-SCCCEEEEEEEEEEGGGSCGGGHHHHHCTTTTCEEEEEE
T ss_pred HHHHHHhcCCcEEEEEEEecCCccceeEEEEecccccccC-CccccccCceeEEEeccCChhhhhcccCccccCeeEEEE
Confidence 8889999999999999888776 567877662 34 56 44444444321 112589999
Q ss_pred EEeCHhhHHhcccC---CC----------------------Ccc---hhhHHHHHhcCcEEEEEeCc-eEEecCCHHHHH
Q 046608 177 YLLNPSVLDRIELK---PT----------------------SIE---KEVFPEIAVENKLFAMVLPG-FWMDIGQPKDYI 227 (256)
Q Consensus 177 y~~~~~~~~~l~~~---~~----------------------~~~---~~~~~~l~~~~~v~~~~~~~-~~~di~t~~d~~ 227 (256)
.+|+-+++..+.+. .. .+| .++++.+ ..+.++.+.- .|..+-+..|+.
T Consensus 310 ~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~---~~~~~~~V~R~~FsPvKn~~dl~ 386 (505)
T 2oeg_A 310 LWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMF---ESASAIVVPRSRFAPVKTCADLL 386 (505)
T ss_dssp EEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSC---TTCEEEECCGGGCCCCSSHHHHH
T ss_pred EEEEHHHHHHHHhhhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhc---CcceEEEeccceeecccCCCCHH
Confidence 99998887754211 00 011 1233322 1233444332 688999999999
Q ss_pred HHHHHHHh
Q 046608 228 TGLRLYLD 235 (256)
Q Consensus 228 ~a~~~~~~ 235 (256)
.++..++.
T Consensus 387 ~~~sdly~ 394 (505)
T 2oeg_A 387 ALRSDAYV 394 (505)
T ss_dssp HHHSTTEE
T ss_pred HHHHHHHh
Confidence 88776554
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=116.73 Aligned_cols=181 Identities=22% Similarity=0.230 Sum_probs=132.7
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee---CCcchHHHHHHHHHH-------------cCCCEEEEEccCChHHHHHHHH
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKA-------------VGVTEVVLAINYQPEVMLNFLK 65 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i---~g~pli~~~l~~l~~-------------~~i~~i~vv~~~~~~~i~~~~~ 65 (256)
.+|+||||.||||+. ..||+|+|+ .|+|++++.++++.+ .++..+++.+.+..+.+.++++
T Consensus 37 avvlLAGG~GTRLG~---~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~~~f~ 113 (405)
T 3oc9_A 37 ALITPAGGQGSRLGF---EHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEINNYFK 113 (405)
T ss_dssp EEEEECCSBCTTTTC---CSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHHHHHH
T ss_pred EEEEecCCCcccccC---CCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHHHHHH
Confidence 478999999999976 789999999 899999999988864 4677677777777899999998
Q ss_pred hhhhccCc---EEEeec---------------------cCCcCCCcHHHHHHH-----hhhcCCCCCcEEEEeCCe-ecc
Q 046608 66 EFEKKLEI---KITCSQ---------------------ETEPLGTAGPLALAR-----DKLIDDSGEPFFVLNSDV-ISE 115 (256)
Q Consensus 66 ~~~~~~~~---~v~~~~---------------------~~~~~g~~~s~~~~~-----~~i~~~~~~~~lv~~~D~-~~~ 115 (256)
+. +.+++ .+.+.. .+.+.|+++.+.... +.+...+-+++.+...|+ +..
T Consensus 114 ~~-~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvDN~L~~ 192 (405)
T 3oc9_A 114 EH-QYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCK 192 (405)
T ss_dssp HT-GGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTTBTTCC
T ss_pred hC-cccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCCCcccc
Confidence 73 33444 244322 345677776665432 223332223899999999 666
Q ss_pred cchHHHHHHHHhcCCceEEEEEecCCC-cCceeEEE-cCCCCeEeEEeecCCCC---------CCCeEEEEEEEeCHhhH
Q 046608 116 YPLKQMIEFHRGHGGEASIMVTKVDEP-SKYGVVVM-EETMGKVEKFVEKPKNF---------VGNKINAGIYLLNPSVL 184 (256)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~-~~~~~~v~~~~ek~~~~---------~~~~~~~Giy~~~~~~~ 184 (256)
...-.++..+..+++++++-+++..++ ...|.+.. |+. .+|.++.+.|... .-+..|+++++|+.+++
T Consensus 193 ~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~dg~-~~vvEysei~~e~e~~~~~g~l~fn~~Ni~~h~fs~~fL 271 (405)
T 3oc9_A 193 DVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQER-IKVVEYTELTDELNKQLSNGEFIYNCGHISINGYSTSFL 271 (405)
T ss_dssp SSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTE-EEEECGGGCCTTTTCBCTTSCBSSCEEEEEEEEEEHHHH
T ss_pred cCCHHHHHHHHHcCCCEEEEEEECCCCCCccceEEEECCe-eEEEEEeeCCHHHhhcCCCCceeeccceeEeeecCHHHH
Confidence 666788899999999999988888776 77887764 433 4788888866531 12367899999999999
Q ss_pred Hhc
Q 046608 185 DRI 187 (256)
Q Consensus 185 ~~l 187 (256)
+.+
T Consensus 272 ~~i 274 (405)
T 3oc9_A 272 EKA 274 (405)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=121.23 Aligned_cols=180 Identities=17% Similarity=0.212 Sum_probs=128.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeC---CcchHHHHHHHHHHc--------C------CCEEEEEccCChHHHHHH
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKAV--------G------VTEVVLAINYQPEVMLNF 63 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~---g~pli~~~l~~l~~~--------~------i~~i~vv~~~~~~~i~~~ 63 (256)
|.+|+||||.||||+. ..||+|+|++ |+|+++++++++... | +..+++.+++..+.+.++
T Consensus 104 vavvlLaGG~GTRLg~---~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t~~~ 180 (486)
T 2yqc_A 104 VAVLLMAGGQGTRLGS---SAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNATESF 180 (486)
T ss_dssp EEEEEEEESBCGGGTC---SSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHHHHH
T ss_pred eEEEEEcCCccccCCC---CCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHHHHH
Confidence 4689999999999965 7899999999 999999999999876 5 777888888888889999
Q ss_pred HHhhhhccCc---EEEeecc----------------------CCcCCCcHHHHHH-----HhhhcCCCCCcEEEEeCCee
Q 046608 64 LKEFEKKLEI---KITCSQE----------------------TEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVI 113 (256)
Q Consensus 64 ~~~~~~~~~~---~v~~~~~----------------------~~~~g~~~s~~~~-----~~~i~~~~~~~~lv~~~D~~ 113 (256)
+++. +.+++ .+.+..| +.+.|+++.+... ++.+...+-+++.+...|.+
T Consensus 181 ~~~~-~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vDN~ 259 (486)
T 2yqc_A 181 FIEN-NYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNC 259 (486)
T ss_dssp HHHT-GGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETTBT
T ss_pred Hhhc-cccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCCCc
Confidence 9863 33343 2221111 2466887766544 22332222237888999984
Q ss_pred cc--cchHHHHHHHHhcCCceEEEEEecCCC-cCceeEEEcC-CCC--eEeEEeecCCC------C------CCCeEEEE
Q 046608 114 SE--YPLKQMIEFHRGHGGEASIMVTKVDEP-SKYGVVVMEE-TMG--KVEKFVEKPKN------F------VGNKINAG 175 (256)
Q Consensus 114 ~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~~-~~~--~v~~~~ek~~~------~------~~~~~~~G 175 (256)
.- .| -.++..+..+++++++.+++..++ ...|.+.... + | .|.++.|+|.. . .-+..|+|
T Consensus 260 l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~~~d-g~~~vvEy~E~~~~~~~~~~~~~~~~~~~~~~Ni~ 337 (486)
T 2yqc_A 260 LVKVAD-PIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQDN-QKPCVIEYSEISQELANKKDPQDSSKLFLRAANIV 337 (486)
T ss_dssp TCCTTC-HHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEETTT-TEEEEECGGGSCHHHHHCEETTEEEEESSCEEEEE
T ss_pred eeeccC-HHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEEecC-CCEEEEEEecCCHHHhhcccccccccccccceeEE
Confidence 43 23 346778888899999888776444 6778776441 3 4 47888887641 1 13588999
Q ss_pred EEEeCHhhHHh
Q 046608 176 IYLLNPSVLDR 186 (256)
Q Consensus 176 iy~~~~~~~~~ 186 (256)
.|+|+.++++.
T Consensus 338 ~~~~~l~~L~~ 348 (486)
T 2yqc_A 338 NHYYSVEFLNK 348 (486)
T ss_dssp EEEEEHHHHHH
T ss_pred EEEEeHHHHHH
Confidence 99999999877
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.6e-06 Score=74.30 Aligned_cols=224 Identities=17% Similarity=0.215 Sum_probs=129.5
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeC-CcchHHHHHHHHHHc----C--CCEEEEEcc-CChHHHHHHHHhhhhccCc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFA-NKPMILHQIEALKAV----G--VTEVVLAIN-YQPEVMLNFLKEFEKKLEI 73 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~-g~pli~~~l~~l~~~----~--i~~i~vv~~-~~~~~i~~~~~~~~~~~~~ 73 (256)
-+|+||||.|+||+. ..||.++++. |+++++..++++... | +. .+|.++ ...+.+.++++++ ..++.
T Consensus 129 avvlLaGGlGTRLG~---~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IP-l~IMTS~~T~~~T~~~f~k~-~~fg~ 203 (528)
T 3r3i_A 129 VVVKLNGGLGTSMGC---KGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVP-LVLMNSFNTDEDTKKILQKY-NHCRV 203 (528)
T ss_dssp EEEEECCCBCTTTTC---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCC-EEEEECTTTHHHHHSSCGGG-TTSSC
T ss_pred EEEEeCCCCccccCC---CCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCC-EEEEeccchhHHHHHHHHhc-CccCC
Confidence 468889999999977 7899999995 999999999988765 3 44 444454 5577888888764 33454
Q ss_pred EEEeecc---------------------------CCcCCCcHHHHH-----HHhhhcCCCCCcEEEEeCCeecccchHHH
Q 046608 74 KITCSQE---------------------------TEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVISEYPLKQM 121 (256)
Q Consensus 74 ~v~~~~~---------------------------~~~~g~~~s~~~-----~~~~i~~~~~~~~lv~~~D~~~~~~~~~~ 121 (256)
++.+..| +.+.|.++-+.. .++.+...+-+++.+...|.+.-.-=-.+
T Consensus 204 ~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vDp~~ 283 (528)
T 3r3i_A 204 KIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYI 283 (528)
T ss_dssp CEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCCHHH
T ss_pred CeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccCHHH
Confidence 4443333 123444432221 13344333334899999999543211234
Q ss_pred HHHHHhc----CCceEEEEEecCCCcC-ceeEEEcCCCCeEeEEeecCCCC--------CCCeEEEEEEEeCHhhHHhcc
Q 046608 122 IEFHRGH----GGEASIMVTKVDEPSK-YGVVVMEETMGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRIE 188 (256)
Q Consensus 122 ~~~~~~~----~~~~~i~~~~~~~~~~-~~~v~~~~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~~~~l~ 188 (256)
+.....+ +++..+-+++...+.. -|.+...++.-.+.++.+-|... .=.+.|+...+|+-++++.+.
T Consensus 284 Lg~~~~~~~~~~~d~~~kVv~Kt~~dek~Gvl~~~dGk~~vvEyseip~e~~~~~~g~~~f~~~Ntnnlw~~L~~L~~v~ 363 (528)
T 3r3i_A 284 LNHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKRLQ 363 (528)
T ss_dssp HHHHSSCSSSCCCSEEEEECCCCTTCCSSCEEECSSSSCEEECTTSSCGGGTTTSSCSSSCCCCEEEEEEEEHHHHHHHH
T ss_pred HHHHHhcccccCCcEEEEEeEccccCCcccEEEEECCeEEEEEecCCChhHhhccCCcccCCeEEEEEEEEEHHHHHHHH
Confidence 5555555 7777776655444433 34443322112455555544311 112578999999988887653
Q ss_pred cCC-------------------CCcc---hhhHHHHHhcCcEEEEEeC-ceEEecCCHHHHHHHHHHH
Q 046608 189 LKP-------------------TSIE---KEVFPEIAVENKLFAMVLP-GFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 189 ~~~-------------------~~~~---~~~~~~l~~~~~v~~~~~~-~~~~di~t~~d~~~a~~~~ 233 (256)
+.. ..++ .++++.. ....++.+. ..|..+-+..|++..+..+
T Consensus 364 ~~~~l~Lp~ivn~K~vd~~~~viqlEt~igd~i~~f---~~~~~i~VpR~rF~PvKn~sdLll~~Sdl 428 (528)
T 3r3i_A 364 EQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSF---ENSLGINVPRSRFLPVKTTSDLLLVMSNL 428 (528)
T ss_dssp HTTCCCCCCEEEEECCSSSSCEEEEEBCSTTCSTTS---SSCCCEECCGGGCCBCCSHHHHHHHHSTT
T ss_pred HhCCCCCCceecCcccCCCCCEEEeHHHHHHHHHhc---cCcEEEEEehHHcccccchHHHHHHhcce
Confidence 211 0111 1222222 122233332 2588999999998776544
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-06 Score=68.84 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=72.2
Q ss_pred CeEEEEe--CCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEE-EEEccCChHHHHHHHHhhhhccCcEEEe
Q 046608 1 MKALILV--GGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEV-VLAINYQPEVMLNFLKEFEKKLEIKITC 77 (256)
Q Consensus 1 m~aiIla--aG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i-~vv~~~~~~~i~~~~~~~~~~~~~~v~~ 77 (256)
|.+||++ +...|||.+ ...+......++||++|+++.+..++++.+ ++++++.. + ..+ .++.++.
T Consensus 4 ~~~vip~k~g~~KtRL~~---~l~~~~~~~l~~~ll~~vl~~l~~~~~~~v~vvv~~~~~--~----~~~---~~~~~v~ 71 (211)
T 2i5e_A 4 MRAVIPYKKAGAKSRLSP---VLSLQEREEFVELMLNQVISSLKGAGIEQVDILSPSVYG--L----EEM---TEARVLL 71 (211)
T ss_dssp CEEEEECCCTTTTGGGTT---TSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTT--C----SSC---CSSEEEE
T ss_pred eEEEEEeCCCCCccccCc---cCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEcCcHH--H----Hhh---cCCEEEE
Confidence 6789999 777888854 222333336679999999999999988999 88886543 1 111 2566643
Q ss_pred eccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHH
Q 046608 78 SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIE 123 (256)
Q Consensus 78 ~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~ 123 (256)
+. .|.+.++..+...+ .+ +++++.||+.+ . ..++++++
T Consensus 72 --~~--~gl~~sl~~a~~~~-~~---~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 72 --DE--KDLNEALNRYLKEA-EE---PVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp --CC--SCHHHHHHHHHHHC-CS---CEEEECSCCTTCCHHHHHHHTT
T ss_pred --CC--CCHHHHHHHHHHhc-CC---CEEEEcCCcCCCCHHHHHHHHc
Confidence 23 67888999888777 33 79999999943 3 34666655
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.25 E-value=7.1e-05 Score=64.78 Aligned_cols=225 Identities=16% Similarity=0.187 Sum_probs=131.7
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee-CCcchHHHHHHHHHHc----C-CCEEEEEccCC-hHHHHHHHHhhhhccCc-
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV----G-VTEVVLAINYQ-PEVMLNFLKEFEKKLEI- 73 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i-~g~pli~~~l~~l~~~----~-i~~i~vv~~~~-~~~i~~~~~~~~~~~~~- 73 (256)
-+|+||||.||||+. ..||.++++ .|+++++..++++... + .-..+|.++.. .+.+.++++++ +.++.
T Consensus 78 avvlLaGGlGTRLG~---~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~-~~Fgl~ 153 (484)
T 3gue_A 78 VVLKLNGGLGTGMGL---NGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKY-PTLYEV 153 (484)
T ss_dssp EEEEEECCCCGGGTC---SSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGC-HHHHTT
T ss_pred EEEEEcCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhC-cccCCC
Confidence 367889999999987 789999999 8999999998887653 2 22455666554 77888888764 22221
Q ss_pred --EEEeecc-----------------------CCcCCCcHHHHH-----HHhhhcCCCCCcEEEEeCCeecccchHHHHH
Q 046608 74 --KITCSQE-----------------------TEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVISEYPLKQMIE 123 (256)
Q Consensus 74 --~v~~~~~-----------------------~~~~g~~~s~~~-----~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~ 123 (256)
.+.+..| +.+.|.++-+.. .++.+...+-+++.+...|.+....=-.++.
T Consensus 154 ~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~~lG 233 (484)
T 3gue_A 154 FDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRLLD 233 (484)
T ss_dssp CCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHHHHH
T ss_pred ccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHHHHH
Confidence 1111111 123444432221 1233433333489999999943311135567
Q ss_pred HHHhcCCceEEEEEecCCCc-CceeEEEc---------CCCCe--EeEEeecCCC-------CC-CCeEEEEEEEeCHhh
Q 046608 124 FHRGHGGEASIMVTKVDEPS-KYGVVVME---------ETMGK--VEKFVEKPKN-------FV-GNKINAGIYLLNPSV 183 (256)
Q Consensus 124 ~~~~~~~~~~i~~~~~~~~~-~~~~v~~~---------~~~~~--v~~~~ek~~~-------~~-~~~~~~Giy~~~~~~ 183 (256)
.+..+++++.+-+++...+. .-|.+... .+ |+ +.++.+-|.. .. -...+++-.+++-..
T Consensus 234 ~~~~~~~d~~~kvv~Kt~~dekgG~l~~~~~~~~~~~~~d-G~~~vvEyseip~e~~~~f~~~~g~~~FNtnNi~~~l~~ 312 (484)
T 3gue_A 234 YMHEKQLGFLMEVCRRTESDKKGGHLAYKDVIDETTGQTR-RRFVLRESAQCPKEDEDSFQNIAKHCFFNTNNIWINLME 312 (484)
T ss_dssp HHHHTTCSEEEEEEECCTTCCSSEEEEEEC--------CC-CEEEEEEGGGSCGGGHHHHTCTTTSCEEEEEEEEEEHHH
T ss_pred HHHhcCCCEEEEEEECCCCCCceeEEEEEccccccccCCC-CCEEEEEeccCCHHHHhhhcCCCCceEeEeeeEEEEHHH
Confidence 77778899988887775553 34533332 13 43 4555554331 11 226688888888766
Q ss_pred HHhc-ccC--C----------------------CCcc---hhhHHHHHhcCcEEEEEeC-ceEEecCCHHHHHHHHHHHH
Q 046608 184 LDRI-ELK--P----------------------TSIE---KEVFPEIAVENKLFAMVLP-GFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 184 ~~~l-~~~--~----------------------~~~~---~~~~~~l~~~~~v~~~~~~-~~~~di~t~~d~~~a~~~~~ 234 (256)
++.+ ... . ..+| .++++.+ ....++.+. ..|..+-+..|++..+..+.
T Consensus 313 l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~---~~~~~ieV~R~rF~PvKn~sdLl~~~Sdly 389 (484)
T 3gue_A 313 LKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLF---DRSEAVVVPRERFAPVKTCSDLLALRSDAY 389 (484)
T ss_dssp HHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTS---SSEEEEECCGGGCCCCSSHHHHHHHHSTTE
T ss_pred HHHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhC---CccEEEEEChhhccccccchHHHHHhhhce
Confidence 6332 111 0 0011 1333332 244455443 47889999999988765543
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=3.6e-05 Score=68.38 Aligned_cols=145 Identities=13% Similarity=0.163 Sum_probs=90.3
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeC---CcchHHHHHHHHHHc-C-CCEEEEEcc-CChHHHHHHHHhhhhccCcEE
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKAV-G-VTEVVLAIN-YQPEVMLNFLKEFEKKLEIKI 75 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~---g~pli~~~l~~l~~~-~-i~~i~vv~~-~~~~~i~~~~~~~~~~~~~~v 75 (256)
-+|+||||.|+||+- ..||.++|++ |+++++..++++.+. | .-..+|.++ ...+.+.+++++++-. ...+
T Consensus 116 avvllaGGlGTRLG~---~~pK~~lpv~~~s~ks~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~fgl~-~~~V 191 (630)
T 3ogz_A 116 VFVLVAGGLGERLGY---SSIKVSLPVETATNTTYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRELQLE-VPNL 191 (630)
T ss_dssp EEEEECCCEEGGGTE---EEEGGGSBSCTTTCCBHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHHTTCC-CTTE
T ss_pred eEEEecCCcccccCC---CCCcccceecCCCCCcHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHHhCCC-cccE
Confidence 367889999999987 6799999996 999999999988754 3 223455554 5578888999875321 1122
Q ss_pred Eeecc----------------------CCcCCCcHHH--HH---------------------HHhhhcCCCCCcEEEEeC
Q 046608 76 TCSQE----------------------TEPLGTAGPL--AL---------------------ARDKLIDDSGEPFFVLNS 110 (256)
Q Consensus 76 ~~~~~----------------------~~~~g~~~s~--~~---------------------~~~~i~~~~~~~~lv~~~ 110 (256)
.+..| +.+.|.++-+ +. .++.+...+-+++.+...
T Consensus 192 ~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~~v 271 (630)
T 3ogz_A 192 HVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQD 271 (630)
T ss_dssp EEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEEECT
T ss_pred EEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEEcc
Confidence 22211 1234444322 11 244443333348899999
Q ss_pred Ceecccch-HHHHHHHHhcCCceEEEEEecCCCcCceeEEE
Q 046608 111 DVISEYPL-KQMIEFHRGHGGEASIMVTKVDEPSKYGVVVM 150 (256)
Q Consensus 111 D~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~ 150 (256)
|++.-... -.++..+..++.++.+-+++......-|.+..
T Consensus 272 DN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p~E~vG~l~~ 312 (630)
T 3ogz_A 272 TNAGATITIPISLALSAEHSLDMNFTCIPRVPKEPIGLLCR 312 (630)
T ss_dssp TBTTHHHHHHHHHHHHHHTTCSEEEEEECCCSSCSSCEEEE
T ss_pred CCccccccCHHHhHHHHhcCCCEEEEEEECCCCcceeeEEE
Confidence 99542222 23567777788888887776533344555443
|
| >3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0002 Score=56.99 Aligned_cols=89 Identities=10% Similarity=0.131 Sum_probs=59.4
Q ss_pred cchHHHHHHHHHHcCCCEEEEEccCChHHH---HHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEE
Q 046608 31 KPMILHQIEALKAVGVTEVVLAINYQPEVM---LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (256)
Q Consensus 31 ~pli~~~l~~l~~~~i~~i~vv~~~~~~~i---~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv 107 (256)
++|+.++++.+...+.+.++++++.....+ .... . . ++ .++.|. ..|.+.++..++..+-..+.+.+++
T Consensus 37 ~~ll~~tl~~~~~~~~~~vvvvt~~~~~~~~~~~~~~-~--~--~~--~~~~q~-~~gLg~rl~~a~~~~~~~~~~~vli 108 (242)
T 3cgx_A 37 RHFVQDMLQGLARLHADLHICYVPGDADLPEKFKAWL-G--P--QH--MFAAQQ-GLDLGERMKHAMQKAFDDGYDRVVL 108 (242)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEECCCCTTHHHHHHHHH-C--T--TS--EEEECC-SSSHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCchhhhhhhhhhc-c--C--Cc--EEecCC-CCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 489999999999988777777776554443 2222 1 1 23 334554 5588899999988762111227999
Q ss_pred EeCCe--ecccchHHHHHHHHh
Q 046608 108 LNSDV--ISEYPLKQMIEFHRG 127 (256)
Q Consensus 108 ~~~D~--~~~~~~~~~~~~~~~ 127 (256)
+.+|+ +....+.++++.+..
T Consensus 109 igaD~P~L~~~~l~~a~~~l~~ 130 (242)
T 3cgx_A 109 MGSDIPDYPCELVQKALNDLQH 130 (242)
T ss_dssp ECSSCTTCCHHHHHHHHHHTTT
T ss_pred EcCCCCCCCHHHHHHHHHHhcc
Confidence 99999 445568888775443
|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.074 Score=41.72 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=66.8
Q ss_pred CCcchHHHHHHHHHHcCC--CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC------CcCCCcHHHHHHHhhhcCC
Q 046608 29 ANKPMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET------EPLGTAGPLALARDKLIDD 100 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i--~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~------~~~g~~~s~~~~~~~i~~~ 100 (256)
+....|...|+.+.+... -+|+||-....+...+.++++....+++++..... ...|.+.+.-.+++..+.+
T Consensus 11 n~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~g~ 90 (255)
T 1qg8_A 11 NKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGE 90 (255)
T ss_dssp SCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCCCS
T ss_pred CCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEecccccccccccccCHHHHHHHHHHHcCCC
Confidence 445688899999887643 36777776666677777777644334555432200 3557777788888887665
Q ss_pred CCCcEEEEeCCeecccc-hHHHHHHHHhc
Q 046608 101 SGEPFFVLNSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 101 ~~~~~lv~~~D~~~~~~-~~~~~~~~~~~ 128 (256)
.++++.+|.+..++ +.++++.+.++
T Consensus 91 ---~i~~lD~Dd~~~~~~l~~~~~~~~~~ 116 (255)
T 1qg8_A 91 ---YITYATDDNIYMPDRLLKMVRELDTH 116 (255)
T ss_dssp ---EEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred ---EEEEeCCCCccChHHHHHHHHHHHhC
Confidence 89999999977766 78888877765
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.058 Score=41.90 Aligned_cols=101 Identities=14% Similarity=0.137 Sum_probs=67.5
Q ss_pred CCcchHHHHHHHHHHcCC--CEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcE
Q 046608 29 ANKPMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLIDDSGEPF 105 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i--~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~ 105 (256)
+....|...|+.+.+... -+|+||-....+...+.++++..+. +++++ . .+..|.+.+.-.+++....+ ++
T Consensus 15 n~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i--~-~~n~G~~~a~N~g~~~a~g~---~i 88 (240)
T 3bcv_A 15 NVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVI--H-KKNAGLGMACNSGLDVATGE---YV 88 (240)
T ss_dssp SCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEE--E-CCCCCHHHHHHHHHHHCCSS---EE
T ss_pred CCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEE--E-CCCCChHHHHHHHHHHcCCC---EE
Confidence 455689999999987643 3677766544444444455443222 34443 2 34567788888888888766 89
Q ss_pred EEEeCCeecccc-hHHHHHHHHhcCCceEEE
Q 046608 106 FVLNSDVISEYP-LKQMIEFHRGHGGEASIM 135 (256)
Q Consensus 106 lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~ 135 (256)
+++.+|.+..++ +.++++.+.+++.++++.
T Consensus 89 ~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~ 119 (240)
T 3bcv_A 89 AFCDSDDYVDSDMYMTMYNVAQKYTCDAVFT 119 (240)
T ss_dssp EECCTTCCCCTTHHHHHHHHHHHHTCSEEEC
T ss_pred EEECCCCcCCHHHHHHHHHHHHhcCCCEEEE
Confidence 999999977766 788888877766665543
|
| >1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.13 Score=44.57 Aligned_cols=101 Identities=11% Similarity=0.112 Sum_probs=67.2
Q ss_pred CCc-chHHHHHHHHHHcCC----CEEEEEccCChH-HHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCC
Q 046608 29 ANK-PMILHQIEALKAVGV----TEVVLAINYQPE-VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (256)
Q Consensus 29 ~g~-pli~~~l~~l~~~~i----~~i~vv~~~~~~-~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~ 102 (256)
+.. ..|...|+.+.+... .+|+||-....+ ...+.++++..+....+.++...+..|.+.+.-.++.....+
T Consensus 39 N~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~gd-- 116 (472)
T 1xhb_A 39 NEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQ-- 116 (472)
T ss_dssp SCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCCSS--
T ss_pred CCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhccCC--
Confidence 344 689999999888642 278777654433 344455544333332344444455568888888888888766
Q ss_pred CcEEEEeCCeecccc-hHHHHHHHHhcCCce
Q 046608 103 EPFFVLNSDVISEYP-LKQMIEFHRGHGGEA 132 (256)
Q Consensus 103 ~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~ 132 (256)
.++++++|....++ +..+++.+.+....+
T Consensus 117 -~i~flD~D~~~~p~~L~~ll~~~~~~~~~~ 146 (472)
T 1xhb_A 117 -VITFLDAHCECTAGWLEPLLARIKHDRRTV 146 (472)
T ss_dssp -EEEEEESSEEECTTCHHHHHHHHHHCTTEE
T ss_pred -eEEEECCCeEeCccHHHHHHHHHHhCCCEE
Confidence 89999999977665 888888877665433
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=3.3e-05 Score=65.61 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=47.2
Q ss_pred EEEEeCCeeccc--chHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCC-CeEeEEeecCCCCCC-CeEEEEEEEeC
Q 046608 105 FFVLNSDVISEY--PLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETM-GKVEKFVEKPKNFVG-NKINAGIYLLN 180 (256)
Q Consensus 105 ~lv~~~D~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~-~~v~~~~ek~~~~~~-~~~~~Giy~~~ 180 (256)
-++--+|++|.- ++.++++.+. +++.. .+++..+++..++.+. +.+ .|.|||..... .+.++|+|+|+
T Consensus 13 ~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g--~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~~~~~~aGiyI~~ 84 (374)
T 2iu8_A 13 GLVPRGSHMSQSTYSLEQLADFLK-----VEFQG--NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKHLKSSEAGAIIIS 84 (374)
T ss_dssp --------CCSCCEEHHHHHHHTT-----CEEES--CTTCEECEECCTTTCCTTEE-EECCSSSTHHHHHTCCCSEEEEE
T ss_pred CcccCccccccCcCcHHHHHHhhC-----CEEEC--CCcceEEEEeccccCCCCeE-EEEeCchhhhhhhcCCcEEEEeC
Confidence 467789999986 7999998765 34432 4566778888877531 566 99999974222 35689999999
Q ss_pred HhhHHh
Q 046608 181 PSVLDR 186 (256)
Q Consensus 181 ~~~~~~ 186 (256)
++++..
T Consensus 85 ~~~l~~ 90 (374)
T 2iu8_A 85 RTQFQK 90 (374)
T ss_dssp HHHHHT
T ss_pred hhHhhh
Confidence 988763
|
| >2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.25 Score=44.03 Aligned_cols=100 Identities=14% Similarity=0.206 Sum_probs=64.8
Q ss_pred ceeCCc--chHHHHHHHHHHcCC-C---EEEEEccCChHHH-HHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhh
Q 046608 26 VDFANK--PMILHQIEALKAVGV-T---EVVLAINYQPEVM-LNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKL 97 (256)
Q Consensus 26 l~i~g~--pli~~~l~~l~~~~i-~---~i~vv~~~~~~~i-~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i 97 (256)
+|.-|. ..|...|+.+.+... . +|+||-....+.. .+.++++.... +++++ ...+..|.+.+.-.++...
T Consensus 118 Ip~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi--~~~~n~G~~~A~N~G~~~A 195 (570)
T 2d7i_A 118 IPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRIL--RTKKREGLIRTRMLGASVA 195 (570)
T ss_dssp EEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEE--ECSSCCCHHHHHHHHHHHC
T ss_pred EEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEE--ECCCCCCHHHHHHHHHHhc
Confidence 333454 588888888876542 2 7777765443322 44444433222 34443 4445568888888888888
Q ss_pred cCCCCCcEEEEeCCeecccc-hHHHHHHHHhcCC
Q 046608 98 IDDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGG 130 (256)
Q Consensus 98 ~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~ 130 (256)
..+ .++++++|.....+ +..+++.+.+...
T Consensus 196 ~gd---~i~fLD~D~~~~p~~L~~ll~~l~~~~~ 226 (570)
T 2d7i_A 196 TGD---VITFLDSHCEANVNWLPPLLDRIARNRK 226 (570)
T ss_dssp CSS---EEEECCSSEEECTTCSHHHHHHHHHCTT
T ss_pred CCC---EEEEEcCCccccccHHHHHHHHHHhCCC
Confidence 765 89999999977655 8888888776543
|
| >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.47 Score=42.65 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=69.1
Q ss_pred cee-CCcchHHHHHHHHHHcC---CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCC
Q 046608 26 VDF-ANKPMILHQIEALKAVG---VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDS 101 (256)
Q Consensus 26 l~i-~g~pli~~~l~~l~~~~---i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~ 101 (256)
+|. +....|..+|+.+.... .-+|+||-....+...+.++++....++.++... ....|.+.+.-.++.....+
T Consensus 99 Ip~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i~~~-~~~~g~~~a~N~g~~~a~g~- 176 (625)
T 2z86_A 99 IPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQK-DYGYQLCAVRNLGLRAAKYN- 176 (625)
T ss_dssp EEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEEC-CCSCCHHHHHHHHHHHCCSS-
T ss_pred EecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEEEeC-CCCcchhHHHHHHHHhCCcC-
Confidence 444 34468899999998763 3477777765555566667766444455554332 22334667777888877665
Q ss_pred CCcEEEEeCCeecccc-hHHHHHHHHhcCCceE
Q 046608 102 GEPFFVLNSDVISEYP-LKQMIEFHRGHGGEAS 133 (256)
Q Consensus 102 ~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~ 133 (256)
.++++.+|.....+ +..+++.+......++
T Consensus 177 --~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~ 207 (625)
T 2z86_A 177 --YVAILDCDMAPNPLWVQSYMELLAVDDNVAL 207 (625)
T ss_dssp --EEEEECTTEEECTTHHHHHHHHHHHCTTEEE
T ss_pred --EEEEECCCCCCCHHHHHHHHHHHhcCCceEE
Confidence 89999999977766 7888887776654433
|
| >3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A | Back alignment and structure |
|---|
Probab=92.83 E-value=0.24 Score=40.73 Aligned_cols=100 Identities=11% Similarity=-0.005 Sum_probs=66.2
Q ss_pred CCcchHHHHHHHHHHcC---CCEEEEEccCChHHHHHHHHhhhhccCcEEEe----ec-cCCcCCCcHHHHHHHhhhcCC
Q 046608 29 ANKPMILHQIEALKAVG---VTEVVLAINYQPEVMLNFLKEFEKKLEIKITC----SQ-ETEPLGTAGPLALARDKLIDD 100 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~---i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~----~~-~~~~~g~~~s~~~~~~~i~~~ 100 (256)
+....|..+|+.+.+.. ..+|+||-+...+...+.++++. .++.. .. .....|.+.++-.++...+.+
T Consensus 58 N~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~----~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~gd 133 (329)
T 3ckj_A 58 DEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAG----ARVVSREQALPEVPIRPGKGEALWRSLAASRGD 133 (329)
T ss_dssp SCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTT----CEEEEHHHHCTTSCCCCSHHHHHHHHHHHCCCS
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhh----hhhccceeeeccCCCCCCHHHHHHHHHHhCCCC
Confidence 45578899999887752 25788877555555566666553 22211 11 344567778888888887765
Q ss_pred CCCcEEEEeCCee-cccc-hHHHHHHHHhc-CCceEEE
Q 046608 101 SGEPFFVLNSDVI-SEYP-LKQMIEFHRGH-GGEASIM 135 (256)
Q Consensus 101 ~~~~~lv~~~D~~-~~~~-~~~~~~~~~~~-~~~~~i~ 135 (256)
.++++++|.. +..+ +.++++.+.++ +.+++..
T Consensus 134 ---~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g 168 (329)
T 3ckj_A 134 ---IVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKS 168 (329)
T ss_dssp ---EEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEE
T ss_pred ---EEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEE
Confidence 8999999998 6665 78888875543 4454444
|
| >3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.67 Score=39.19 Aligned_cols=191 Identities=10% Similarity=0.023 Sum_probs=101.4
Q ss_pred CCcchHHHHHHHHHH----cC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEe-----eccCCcCCCcHHHHHHHhhhc
Q 046608 29 ANKPMILHQIEALKA----VG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITC-----SQETEPLGTAGPLALARDKLI 98 (256)
Q Consensus 29 ~g~pli~~~l~~l~~----~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~-----~~~~~~~g~~~s~~~~~~~i~ 98 (256)
+....|..+|+.+.+ .+ ..+|+||-+...+...+.++++. .++.. .......|.+.++..++....
T Consensus 104 Ne~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgStD~T~~i~~~~~----~~v~~~~~~~i~~~~n~G~g~A~n~G~~~A~ 179 (387)
T 3f1y_A 104 NVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHG----AEVYSENELMSGYGDAHGKGDAMWRALSVTR 179 (387)
T ss_dssp SCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHTT----CEEEEGGGTTGGGCSCCSHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCCccHHHHHHHhC----chhcccceeEecCCccCCHHHHHHHHHHhcC
Confidence 445677777777754 22 45888887665555666666653 33321 122345678888888888876
Q ss_pred CCCCCcEEEEeCCee-cccc-hHHHHHHHHhc-CCceEEEEEecCCCcCceeEEEcCCCCeEeEEeec-------CCCCC
Q 046608 99 DDSGEPFFVLNSDVI-SEYP-LKQMIEFHRGH-GGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEK-------PKNFV 168 (256)
Q Consensus 99 ~~~~~~~lv~~~D~~-~~~~-~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~ek-------~~~~~ 168 (256)
.+ .++++++|.. .+++ +.++++...+. +.+.++........... ....... +++.+.... +....
T Consensus 180 gd---~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~~~~~~~~~~-~~~~~~~-g~v~~~~~~~l~~~~~~~l~~ 254 (387)
T 3f1y_A 180 GD---LVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYRRPFRKGE-SIEEDGG-GRVTELTAKPLFNLFYPELAG 254 (387)
T ss_dssp SS---EEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEEEECC--------CCBCC-SHHHHHTHHHHHHHHCGGGTT
T ss_pred CC---EEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEeecccccccc-ccccccC-CchhhhhHHHHHHHHhHhhcc
Confidence 65 8999999998 6655 78888877655 56666554432211000 0000111 333221100 00000
Q ss_pred CCeEEEEEEEeCHhhHHhcc-cCCCCcchhhHHHHH-hcC-c-EEEEEeCceEEecCCHHHHHH
Q 046608 169 GNKINAGIYLLNPSVLDRIE-LKPTSIEKEVFPEIA-VEN-K-LFAMVLPGFWMDIGQPKDYIT 228 (256)
Q Consensus 169 ~~~~~~Giy~~~~~~~~~l~-~~~~~~~~~~~~~l~-~~~-~-v~~~~~~~~~~di~t~~d~~~ 228 (256)
-....+|.++|+.++++.+. ...+.++.+++-.+. ..| . +.-+++.-+..+-.+...+-.
T Consensus 255 ~~d~~sG~~a~rR~~l~~i~f~~gyg~e~ell~~~~~~~G~~~I~eVpi~~~~h~~~~~~glsk 318 (387)
T 3f1y_A 255 FVQPLAGEFVADRELFCSIPFLTGYAVETGIMIDVLKKVGLGAMAQVDLGERQNRHQHLRDLSR 318 (387)
T ss_dssp CSCTTCSCEEEEHHHHTTSCEECSTTHHHHHHHHHHHHHCGGGEEEEEEEECCCCCCCHHHHHH
T ss_pred ccccccccEEEEHHHHHhCCCCCCcchHHHHHHHHHHhcCCCeEEEEecceeecCCCCHHHHHH
Confidence 01123678999999999873 223444445544443 334 3 655655322223333444433
|
| >2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=1.4 Score=38.42 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=63.5
Q ss_pred ceeCCc-c-hHHHHHHHHHHcCC-C---EEEEEccCCh-HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhc
Q 046608 26 VDFANK-P-MILHQIEALKAVGV-T---EVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (256)
Q Consensus 26 l~i~g~-p-li~~~l~~l~~~~i-~---~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~ 98 (256)
+|.-|. . .|...|+.+.+... . +|+||-.... +.+...+... .+++++ ...+..|.+.+.-.++....
T Consensus 72 Ip~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~---~~v~vi--~~~~n~G~~~A~N~G~~~A~ 146 (501)
T 2ffu_A 72 ITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKI---EKVRVL--RNDRREGLMRSRVRGADAAQ 146 (501)
T ss_dssp EEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGB---TTEEEE--ECSSCCHHHHHHHHHHHHCC
T ss_pred EEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcC---CCEEEE--ECCCCcCHHHHHHHHHHhcC
Confidence 444454 3 78888988876542 2 7777764332 2333333221 145444 33445677888888888887
Q ss_pred CCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCc
Q 046608 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGE 131 (256)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~ 131 (256)
.+ .++++++|....++ +..+++.+.+....
T Consensus 147 gd---~i~flD~D~~~~p~~L~~ll~~~~~~~~~ 177 (501)
T 2ffu_A 147 AK---VLTFLDSHCECNEHWLEPLLERVAEDRTR 177 (501)
T ss_dssp SS---EEEECCSSEEECTTCHHHHHHHHHHCTTE
T ss_pred CC---EEEEECCCcccCccHHHHHHHHHHhCCCe
Confidence 66 89999999976655 88998888776654
|
| >4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=90.08 E-value=2.1 Score=39.89 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=63.4
Q ss_pred cceeCCcc--hHHHHHHHHHHcCC-C---EEEEEccCChHHH---------------HHHHHhhhhccCcEEEeeccCCc
Q 046608 25 LVDFANKP--MILHQIEALKAVGV-T---EVVLAINYQPEVM---------------LNFLKEFEKKLEIKITCSQETEP 83 (256)
Q Consensus 25 ll~i~g~p--li~~~l~~l~~~~i-~---~i~vv~~~~~~~i---------------~~~~~~~~~~~~~~v~~~~~~~~ 83 (256)
++|.-|.+ ++...|+.+.+... . +|+|+.....+.. .+.++.+.++.++.+.... .+.
T Consensus 145 iIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~~i~~~-~~~ 223 (802)
T 4hg6_A 145 LVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVYSTRE-RNE 223 (802)
T ss_dssp EEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEECS-SCC
T ss_pred EEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcEEEEec-CCC
Confidence 34444543 66999999977642 2 6777775443222 2233333344466655332 233
Q ss_pred CCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHHHHhc
Q 046608 84 LGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~ 128 (256)
.|.+.++-.+++..+.+ .++++++|...+++ +.++++.+.+.
T Consensus 224 ~GKa~alN~gl~~a~gd---~Il~lDaD~~~~pd~L~~lv~~~~~d 266 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGE---LVVVFDADHVPSRDFLARTVGYFVED 266 (802)
T ss_dssp SHHHHHHHHHHHHCCCS---EEEECCTTEEECTTHHHHHHHHHHHS
T ss_pred CcchHHHHHHHHhcCCC---EEEEECCCCCcChHHHHHHHHHHhcC
Confidence 56677888888888766 89999999977766 78888877544
|
| >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* | Back alignment and structure |
|---|
Probab=89.33 E-value=2.6 Score=37.77 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=63.6
Q ss_pred CCcchHHHHHHHHHHcCC--CEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcE
Q 046608 29 ANKPMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLIDDSGEPF 105 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i--~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~ 105 (256)
+....|...|+.+..... -+|+||-+...+...+.++++.... +++++ . .+..|.+.+.-.++.....+ .+
T Consensus 385 n~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~~--~-~~n~G~~~a~n~g~~~a~g~---~i 458 (625)
T 2z86_A 385 NCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRFI--S-QKNKGIGSASNTAVRLCRGF---YI 458 (625)
T ss_dssp SCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEE--E-ECCCCHHHHHHHHHHHCCSS---EE
T ss_pred CCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCCcEEEE--e-CCCCCHHHHHHHHHHhcCCC---EE
Confidence 456799999999886542 3677776544444455555543222 34444 2 34557788888888887765 89
Q ss_pred EEEeCCeecccc-hHHHHHHHHhcC
Q 046608 106 FVLNSDVISEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 106 lv~~~D~~~~~~-~~~~~~~~~~~~ 129 (256)
+++.+|.++.++ +.++++.+....
T Consensus 459 ~~ld~D~~~~~~~l~~~~~~~~~~~ 483 (625)
T 2z86_A 459 GQLDSDDFLEPDAVELCLDEFRKDL 483 (625)
T ss_dssp EECCTTCEECTTHHHHHHHHHHHCT
T ss_pred EEECCCcccChhHHHHHHHHHHhCC
Confidence 999999977666 788887765544
|
| >2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A* | Back alignment and structure |
|---|
Probab=87.32 E-value=4.5 Score=34.24 Aligned_cols=156 Identities=10% Similarity=0.042 Sum_probs=81.1
Q ss_pred CEEEEEccCChHHHHHHHH----hhhhccCcEEEeeccC--C--cCCCcHHHHHHH----hhhcCCCCCcEEEEeCCee-
Q 046608 47 TEVVLAINYQPEVMLNFLK----EFEKKLEIKITCSQET--E--PLGTAGPLALAR----DKLIDDSGEPFFVLNSDVI- 113 (256)
Q Consensus 47 ~~i~vv~~~~~~~i~~~~~----~~~~~~~~~v~~~~~~--~--~~g~~~s~~~~~----~~i~~~~~~~~lv~~~D~~- 113 (256)
-+|+||-+...+...+.++ +.....+++++...+. . ..|.+.++..++ ...+.+ .+++++||..
T Consensus 29 ~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd---~vv~mDADlq~ 105 (397)
T 2bo4_A 29 VHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWE---RIHFYDADITS 105 (397)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCS---EEEECCTTCSS
T ss_pred eEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhCCCC---EEEEEcCCCCC
Confidence 3677776555444444444 2210225555433322 2 468889999998 555444 8899999995
Q ss_pred ccc-chHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcC-C-----CCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHh
Q 046608 114 SEY-PLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEE-T-----MGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDR 186 (256)
Q Consensus 114 ~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~-~-----~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~ 186 (256)
+++ .+.++++...+ ++|.++...... ..-+.+...- . ........ +...+ .+|.+.++.++++.
T Consensus 106 ~~P~~i~~Ll~~l~~-g~D~V~g~~~r~--~~~~~~~~~~~~~ll~~~~~~~~~~-~i~dp-----~sG~~a~~R~vl~~ 176 (397)
T 2bo4_A 106 FGPDWITKAEEAADF-GYGLVRHYFPRA--STDAMITWMITRTGFALLWPHTELS-WIEQP-----LGGELLMRREVAAM 176 (397)
T ss_dssp CCHHHHHHHHHHHHT-TCSEEEEECCCC--TTSCHHHHHTHHHHHHHHCTTSSGG-GCSCT-----TCCCEEEEHHHHHH
T ss_pred CCHHHHHHHHHHHHc-CCCEEEEEeccc--cCCcHHHHHHHHHHHHHHHHHhhcc-ccccC-----CcccEEEeHHHHHH
Confidence 454 47888886644 577766542211 0000000000 0 00000000 11111 26788999999887
Q ss_pred cc-------cCCCCcchhhHHHHHhcC-cEEEEEeC
Q 046608 187 IE-------LKPTSIEKEVFPEIAVEN-KLFAMVLP 214 (256)
Q Consensus 187 l~-------~~~~~~~~~~~~~l~~~~-~v~~~~~~ 214 (256)
+. ...+.++.++.-.+...| ++.-+++.
T Consensus 177 l~~~~~~~~~~~fg~eiel~~~a~~~G~rI~EVpig 212 (397)
T 2bo4_A 177 LYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIP 212 (397)
T ss_dssp HHHCHHHHTCCSTTHHHHHHHHHHHTTCCEEEEECT
T ss_pred HhhhcccCcCCCcchHHHHHHHHHHcCCEEEEEECc
Confidence 72 223444445555555555 67666664
|
| >4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A* | Back alignment and structure |
|---|
Probab=86.94 E-value=1.6 Score=39.61 Aligned_cols=101 Identities=11% Similarity=0.160 Sum_probs=61.8
Q ss_pred CCcchHHHHHHHHHHc-----CCCEEEEEccCCh-----HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhc
Q 046608 29 ANKPMILHQIEALKAV-----GVTEVVLAINYQP-----EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~-----~i~~i~vv~~~~~-----~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~ 98 (256)
++...|...|+.+.+. .+.+|+||-+... +.+.+.+..... +++++ .+. ..|.+.+.-.++....
T Consensus 190 N~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~--~I~vI--~~~-N~G~a~a~N~Gl~~A~ 264 (657)
T 4fix_A 190 NRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGS--RLSIH--DQP-NLGGSGGYSRVMYEAL 264 (657)
T ss_dssp SCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGG--GEEEE--ECC-CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCC--CEEEE--ECC-CCCHHHHHHHHHHHHH
Confidence 5567888999888664 2346777765432 234444443322 34443 333 5566666667766653
Q ss_pred CC-CCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEE
Q 046608 99 DD-SGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASI 134 (256)
Q Consensus 99 ~~-~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i 134 (256)
.. +.+.+++++.|.+..++ +.++++.+.......++
T Consensus 265 g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~v 302 (657)
T 4fix_A 265 KNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLV 302 (657)
T ss_dssp HHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEE
T ss_pred hcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEE
Confidence 21 12289999999977666 88888887766544333
|
| >3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* | Back alignment and structure |
|---|
Probab=85.68 E-value=0.15 Score=46.83 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHcCC--CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEE
Q 046608 29 ANKPMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i--~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~l 106 (256)
++...|..+|+.+.+... -+|+||-....+...+.++++...++..+.+....+..|.+.+.-.|+.....+ .++
T Consensus 12 N~~~~L~~~L~Sll~Qt~~~~EIIVVDDgStD~t~~il~~~~~~~~~~i~~i~~~~n~G~~~arN~gi~~A~gd---yI~ 88 (729)
T 3l7i_A 12 NAEEYITGCLESIKQQRTQDFNLIIVNDGSTDQSKKLMDEAIKDYDKNIRFIDLDENSGHAHARNIALEEVETP---YFM 88 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCcHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHhccCC---EEE
Confidence 334566777777655532 356666654455555666655433222344444444567778888888877765 899
Q ss_pred EEeCCeecccc-hHHHHHHHH
Q 046608 107 VLNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 107 v~~~D~~~~~~-~~~~~~~~~ 126 (256)
++.+|.+..++ +..+++.+.
T Consensus 89 flD~Dd~~~p~~l~~l~~~l~ 109 (729)
T 3l7i_A 89 FLDADDELASYAITFYLEKFN 109 (729)
T ss_dssp ---------------------
T ss_pred EECCCCCCChhHHHHHHHHhc
Confidence 99999977655 777777666
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 256 | ||||
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 2e-58 | |
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 2e-57 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 2e-48 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 3e-41 | |
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 2e-38 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 6e-25 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 4e-23 | |
| d2oi6a2 | 248 | c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate | 8e-18 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 6e-14 | |
| d2dpwa1 | 231 | c.68.1.19 (A:1-231) Uncharacterized protein TTHA01 | 2e-10 | |
| d1vgwa_ | 226 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 2e-07 | |
| d1i52a_ | 225 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 6e-07 | |
| d1vpaa_ | 221 | c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-eryt | 7e-07 | |
| d1w77a1 | 226 | c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl- | 3e-06 | |
| d1w55a1 | 205 | c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, | 4e-05 | |
| d1vh1a_ | 246 | c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac | 4e-05 | |
| d1vica_ | 255 | c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac | 9e-05 | |
| d1e5ka_ | 188 | c.68.1.8 (A:) Molybdenum cofactor biosynthesis pro | 4e-04 | |
| d1h7ea_ | 245 | c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic ac | 7e-04 | |
| d2icya2 | 378 | c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 | 0.003 |
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 185 bits (471), Expect = 2e-58
Identities = 56/238 (23%), Positives = 95/238 (39%), Gaps = 18/238 (7%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK +IL GG GTRL P+T V K L+ +KPMI + + L G+ E+++ + +
Sbjct: 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGY 61
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
L + I++ +++ P G A + L + VL ++
Sbjct: 62 FQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGE--PSCLVLGDNIFFGQGFSP 119
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
+ A++ +V +P ++GVV + + EKPK N G+Y +
Sbjct: 120 KLRHVAARTEGATVFGYQVMDPERFGVVEF-DDNFRAISLEEKPKQPKSNWAVTGLYFYD 178
Query: 181 PSVLD---------RIELKPTSIEKEVFPEIAVENKLFAMVLP--GFWMDIGQPKDYI 227
V++ R EL+ TSI + L +L W+D G I
Sbjct: 179 SKVVEYAKQVKPSERGELEITSINQMYLE----AGNLTVELLGRGFAWLDTGTHDSLI 232
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 182 bits (464), Expect = 2e-57
Identities = 56/235 (23%), Positives = 92/235 (39%), Gaps = 12/235 (5%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
K +IL GG GTRL P TL++ K L+ +KPMI + + L G+ E+++ Q
Sbjct: 2 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 61
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
L + + + + P G A + + VL ++ + +
Sbjct: 62 FQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGES--FIGNDLSALVLGDNLYYGHDFHE 119
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
++ AS+ V +P +YGVV ++ GK EKP N G+Y +
Sbjct: 120 LLGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYD 178
Query: 181 PSVLDRIE-LKPTSIEKE-----VFPEIAVENKLFAMVLP--GFWMDIGQPKDYI 227
V+D LKP S E V +L ++ W+D G +
Sbjct: 179 QQVVDIARDLKP-SPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLL 232
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 160 bits (405), Expect = 2e-48
Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 10/234 (4%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
MK ++L GG GTRL P+T +V K L+ +KPMI + + L G+ ++++ + +
Sbjct: 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
L + ++ + + EP G A + +D + D + VL +V + +
Sbjct: 64 YRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGDS--KVALVLGDNVFYGHRFSE 121
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
++ A I V +P +GVV + G+V EKP N + G+Y +
Sbjct: 122 ILRRAASLEDGAVIFGYYVRDPRPFGVVEFDS-EGRVISIEEKPSRPKSNYVVPGLYFYD 180
Query: 181 PSVLDRIELKPTSIEKE-----VFPEIAVENKLFAMVLP--GFWMDIGQPKDYI 227
V++ S E V E KL ++ W+D G +
Sbjct: 181 NQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLL 234
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 140 bits (353), Expect = 3e-41
Identities = 62/247 (25%), Positives = 113/247 (45%), Gaps = 27/247 (10%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
KA+IL GG GTRL T+ PKP+V+ KP++ H ++ G+ + ++ Y+ V+
Sbjct: 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62
Query: 61 LNFLKEF--------------------EKKLEIKITCSQETEPLGTAGPLALARDKLIDD 100
+ + ++ +T + T G L + + DD
Sbjct: 63 KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD 122
Query: 101 SGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160
E F D +++ +K I+FH+ HG +A++ T P ++G + ++ + +
Sbjct: 123 --EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF--PPGRFGALDIQAGQVRSFQE 178
Query: 161 VEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDI 220
K + IN G ++LNPSV+D I+ T+ E+E +A + +L A PGFW +
Sbjct: 179 KPKGDGAM---INGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPM 235
Query: 221 GQPKDYI 227
+D +
Sbjct: 236 DTLRDKV 242
|
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 133 bits (336), Expect = 2e-38
Identities = 49/281 (17%), Positives = 100/281 (35%), Gaps = 46/281 (16%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFA-NKPMILHQIEALKAVGVTEVVLAINYQPEV 59
+ +IL GG GTRL PLT KP V N +I + ++++ + +
Sbjct: 12 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSAS 71
Query: 60 MLNFLKEFEKKLE-------------IKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106
+ L + + GTA + + + +
Sbjct: 72 LNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYL 131
Query: 107 VLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDE--PSKYGVVVMEETMGKVEKFVEKP 164
+L D + ++ I+ HR + ++ +DE + +G++ ++E G++ +F EKP
Sbjct: 132 ILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDE-EGRIIEFAEKP 190
Query: 165 KNFVGNK---------------------INAGIYLLNPSVLDRIE----LKPTSIEKEVF 199
+ + GIY+++ V+ + EV
Sbjct: 191 QGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 250
Query: 200 PE-IAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK 239
P ++ ++ A + G+W DIG + + L +K
Sbjct: 251 PGATSLGMRVQAYLYDGYWEDIGTIEAF---YNANLGITKK 288
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 97.5 bits (241), Expect = 6e-25
Identities = 51/231 (22%), Positives = 91/231 (39%), Gaps = 22/231 (9%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
A+IL G GTR++ PK L A M+ H ++ A+ + V + ++ E++
Sbjct: 4 AIILAAGKGTRMKSDL---PKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEE 60
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLN-SDVISEYPLKQM 121
L + ++E LGT + + L SG + + +I+ LK +
Sbjct: 61 VLAGQTE-------FVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNL 113
Query: 122 IEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKIN---AGIYL 178
I+FH H A+I+ + D P YG +V + + +K +I G Y+
Sbjct: 114 IDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYV 173
Query: 179 LNPSVLDRI--ELKPTSIEKEVF----PEIAVEN--KLFAMVLPGFWMDIG 221
+ L + + + E + I E K+ A L F +G
Sbjct: 174 FDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLG 224
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 92.0 bits (227), Expect = 4e-23
Identities = 48/237 (20%), Positives = 100/237 (42%), Gaps = 30/237 (12%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
+KA+IL G GTRLRPLT + PK LV KP+I +QIE LK G+ ++++ + Y E
Sbjct: 4 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQF 63
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
++K +++ + + L L +++L + + + + + + +
Sbjct: 64 ----DYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELAN----SYVIDADNYLFKNMFRN 115
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLN 180
+ V + D +++ +V ++ KV+ + K +I +G+ +
Sbjct: 116 DLTRSTYF------SVYREDCTNEWFLVYGDD--YKVQDIIVDSKA---GRILSGVSFWD 164
Query: 181 PSVLDRI--ELKPTSIEKE--------VFPEIAVENKLFAMVLPG-FWMDIGQPKDY 226
++I + + E + + E ++ L G +I +DY
Sbjct: 165 APTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDY 221
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 77.8 bits (190), Expect = 8e-18
Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 13/177 (7%)
Query: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
M +IL G GTR+ +PK L A K M+ H I+A +G V L + +++
Sbjct: 3 MSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLL 59
Query: 61 LNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQ 120
LK+ + + E LGT + A DD E +L DV
Sbjct: 60 KQALKDD------NLNWVLQAEQLGTGHAMQQAAPFFADD--EDILMLYGDVPLISVETL 111
Query: 121 MIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIY 177
G ++ K+D+P+ YG + E GKV VE + I
Sbjct: 112 QRLRDAKPQGGIGLLTVKLDDPTGYGRITRE--NGKVTGIVEHKDATDEQRQIQEIN 166
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 67.4 bits (163), Expect = 6e-14
Identities = 48/263 (18%), Positives = 82/263 (31%), Gaps = 48/263 (18%)
Query: 1 MK--ALILVGGFGTRLRPL-TLSVPKPLVDFA-NKPMILHQIEALKAVGVTEVVLAINYQ 56
MK AL++ GG G RL PL PKP + K ++ +E L + E L +
Sbjct: 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60
Query: 57 PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY 116
+ + I E TAG + L + + + E VL +D
Sbjct: 61 DQEA------VARPYADGIRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGD 114
Query: 117 PLKQMIEFHRGH-----GGEASIMVTKVDEPSKYGVVVME---ETMGKVEKFVEKPKNFV 168
G ++ + ++YG + + + E FVEKP
Sbjct: 115 DEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGFVEKPSYAE 174
Query: 169 GNKINAGIYLLNPSVLDR--------------------IELKPTSIEKEVFPEI------ 202
+ Y+ N V L + +EV+ +
Sbjct: 175 ALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISID 234
Query: 203 -AV---ENKLFAMVLPGFWMDIG 221
V ++ ++ W D+G
Sbjct: 235 YGVMEKAERVRVVLGRFPWDDVG 257
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Score = 56.8 bits (136), Expect = 2e-10
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 1 MK--ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE 58
M+ A++L GG + K LV + +PM+ +EAL A G++ V + N
Sbjct: 1 MRPSAIVLAGGKEAWAERFGVG-SKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLV 59
Query: 59 VM 60
Sbjct: 60 PA 61
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Score = 48.5 bits (114), Expect = 2e-07
Identities = 21/163 (12%), Positives = 48/163 (29%), Gaps = 9/163 (5%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLN 62
ALI G G R PK V+ +K ++ H + + ++ + + + +
Sbjct: 6 ALIPAAGIGVRFG---ADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFAD 62
Query: 63 FLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMI 122
++ ++ + Q G L L + +L D + +
Sbjct: 63 KVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAE---TDNILVHDAARCCLPSEAL 119
Query: 123 EFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPK 165
G A+ + G++ V++
Sbjct: 120 ARLIEQAGNAAEGGILAVPVADTLKRAES---GQISATVDRSG 159
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Score = 47.0 bits (110), Expect = 6e-07
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 1 MK--ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA 43
+ A++ GFG R++ PK + N+ ++ H + AL A
Sbjct: 2 LDVCAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLA 43
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Score = 46.6 bits (109), Expect = 7e-07
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 1 MK-ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA 43
M A++L G G R+ +VPK ++ + + + +
Sbjct: 3 MNVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLK 43
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Score = 44.7 bits (104), Expect = 3e-06
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA 43
++L GG G R++ S+PK + +P+ L+
Sbjct: 7 VILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSR 44
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Score = 41.1 bits (95), Expect = 4e-05
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALK 42
++L G TR V K + N P+ L+ + L
Sbjct: 4 LIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLS 40
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Score = 41.6 bits (96), Expect = 4e-05
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79
KPLVD KPMI+H +E + G +++A +++ E + S
Sbjct: 18 KPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSG 74
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Score = 40.4 bits (93), Expect = 9e-05
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 23 KPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVM 60
KPL D KPMI H E G + V++A + +
Sbjct: 18 KPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVAD 55
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Score = 38.1 bits (87), Expect = 4e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIE 39
++L GG R+ V K L++ KP+ H +
Sbjct: 6 GVVLAGGKARRMG----GVDKGLLELNGKPLWQHVAD 38
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Score = 37.7 bits (86), Expect = 7e-04
Identities = 36/231 (15%), Positives = 66/231 (28%), Gaps = 16/231 (6%)
Query: 23 KPLVDFANKPMILHQIE-ALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81
KPL+D KPMI H E AL+ GV EV +A + + +T +
Sbjct: 19 KPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQ----AVQAFGGKAIMTRNDHE 74
Query: 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDE 141
+ + I + + + E L+ M + ++ +
Sbjct: 75 SGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEA 134
Query: 142 PSKYGVVVMEETMGKVEKFVEKPKNFVGNKINA-------GIYLLNPSVLDRIELKPTSI 194
V V+ T F P + N A + + +L +
Sbjct: 135 AEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMP 194
Query: 195 EKEVFPEI--AVEN--KLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQKNS 241
E+ E + + + + P L L +N+
Sbjct: 195 EQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQELAENA 245
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 36.1 bits (83), Expect = 0.003
Identities = 37/229 (16%), Positives = 72/229 (31%), Gaps = 47/229 (20%)
Query: 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKP----MILHQIEAL-KAVGV----------- 46
L L GG GT + + PK +++ + +I+ QIE L G
Sbjct: 77 VLKLNGGLGTT---MGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFN 133
Query: 47 ----TEVVLAINYQPEVMLNFLKEF-------EKKLEIKITCSQETE---PLGTAGPLAL 92
T ++ V ++ + ++ + + E P G
Sbjct: 134 THDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPA 193
Query: 93 AR-----DKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGE-ASIMVTKVDEPSKYG 146
D + E FV NSD + +++ + E + K K G
Sbjct: 194 LMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLADVKGG 253
Query: 147 VVV-------MEETMGKVEKFVEKPKNFVGNKI-NAGIYLLNPSVLDRI 187
++ + E ++ V + K+ KI N +N + ++
Sbjct: 254 TLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKL 302
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 256 | |||
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 100.0 | |
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 100.0 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 100.0 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 100.0 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.97 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.96 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.85 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.82 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.82 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.82 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.81 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.81 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.8 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.73 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.73 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.7 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 99.69 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 99.67 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 99.3 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 98.44 | |
| d2i5ea1 | 208 | Hypothetical protein MM2497 {Methanosarcina mazei | 97.56 | |
| d1omza_ | 265 | Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga | 96.44 | |
| d1qg8a_ | 255 | Spore coat polysaccharide biosynthesis protein Sps | 95.98 | |
| d1xhba2 | 328 | Polypeptide N-acetylgalactosaminyltransferase 1, N | 95.82 |
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.6e-44 Score=291.80 Aligned_cols=228 Identities=22% Similarity=0.378 Sum_probs=198.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChH-HHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~-~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|+|||||||.||||+|+|...||+|+|++|+|||+|+|+.|..+|+++|+|++++... .+.+++.+ ++++++.+.+..
T Consensus 2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~kp~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~~~~-g~~~gi~I~y~~ 80 (291)
T d1mc3a_ 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD-GSEFGIQLEYAE 80 (291)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-SGGGTCEEEEEE
T ss_pred ccEEEECCcCccccchhhcCCCccccEECCEehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHHhCc-hHhhCcEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999998755 45556654 456789999999
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEE-EeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFV-LNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv-~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
|.++.|+++|+..+.++++.+ ++++ +.+|.++..++..+++.|..+..+++++++++++|+.||++.+|++ ++|.
T Consensus 81 Q~~plGta~Ai~~a~~fi~~~---~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~dP~~yGVve~d~~-g~i~ 156 (291)
T d1mc3a_ 81 QPSPDGLAQAFIIGETFLNGE---PSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDN-FRAI 156 (291)
T ss_dssp CSSCCCSTHHHHHTHHHHTTS---CEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETT-EEEE
T ss_pred CCCCCchHHHHHHHHHHhCCC---CeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECCCcccCCCceeccC-ccee
Confidence 999999999999999999876 4554 4555578888999999999888899999999999999999999998 8999
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcCcEEEEEeC-c-eEEecCCHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVENKLFAMVLP-G-FWMDIGQPKDYITGLR 231 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~~v~~~~~~-~-~~~di~t~~d~~~a~~ 231 (256)
.+.|||..+.++++++|+|+|++++++.+.+- ...-..++.+.+++.+.+.+..+. + .|+|+||+++|.+|+.
T Consensus 157 ~i~EKP~~p~Sn~a~~GiY~f~~~v~~~~~~lk~s~rgE~EItdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~ 236 (291)
T d1mc3a_ 157 SLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAST 236 (291)
T ss_dssp ECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHH
T ss_pred EEEECCCCCCCCeEEEEEEEeChHHHHHHhcCCCCCCCceeehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHH
Confidence 99999999999999999999999999987532 122236889999988876665543 4 6999999999999997
Q ss_pred HH
Q 046608 232 LY 233 (256)
Q Consensus 232 ~~ 233 (256)
.+
T Consensus 237 ~v 238 (291)
T d1mc3a_ 237 FV 238 (291)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=9.5e-44 Score=290.57 Aligned_cols=230 Identities=23% Similarity=0.358 Sum_probs=201.9
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~-~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|||||||||.||||+|+|..+||+|+||+|+|||+|+|+.|..+|+++|++++++ ..+.+.+++... +.+++++.+..
T Consensus 2 ~KavILAgG~GtRl~plT~~~pKpllpi~gkPiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~~~-~~~g~~I~y~~ 80 (292)
T d1fxoa_ 2 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDG-SNWGLDLQYAV 80 (292)
T ss_dssp EEEEEECCCCCTTTTTHHHHSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTCEEEEEE
T ss_pred cEEEEECCCCCCcCChhhcCCCcccCEECCEehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhccc-cccCeEEEEcc
Confidence 5899999999999999999999999999999999999999999999999888764 467777777653 45689999999
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
|.++.|+++|+..|.+.++++. .|+++.+|.+++.++.++++.|..+.+++++++.++++|++||++.+|.+ +++..
T Consensus 81 q~~~~Gta~ai~~a~~~i~~~~--~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~~p~~yGV~~~d~~-~ki~~ 157 (292)
T d1fxoa_ 81 QPSPDGLAQAFLIGESFIGNDL--SALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAIS 157 (292)
T ss_dssp CSSCCCGGGHHHHTHHHHTTSE--EEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEEEEECTT-SCEEE
T ss_pred CCCCCcHHHHHHhhhhhcCCCc--eEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECCCHHHCeEEEEcCC-CCEeE
Confidence 9999999999999999998763 46777777789999999999999999999999999999999999999998 99999
Q ss_pred EeecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcCcEEEEEeC-c-eEEecCCHHHHHHHHHH
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVENKLFAMVLP-G-FWMDIGQPKDYITGLRL 232 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~~v~~~~~~-~-~~~di~t~~d~~~a~~~ 232 (256)
+.|||..+.|+++++|+|+|++++++.+.+- ......|+++.+++.+.+.+..+. | .|+|+||+++|++|+..
T Consensus 158 ~~EKP~~p~Snla~~G~Y~f~~~~~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~ 237 (292)
T d1fxoa_ 158 LEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQF 237 (292)
T ss_dssp EEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHH
T ss_pred EEECCCCCCCCcEEEEEEEEChHHHHHHHhCCCCCCCchhhHHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHH
Confidence 9999999999999999999999998876422 233346899999999987777664 3 69999999999999976
Q ss_pred HH
Q 046608 233 YL 234 (256)
Q Consensus 233 ~~ 234 (256)
+.
T Consensus 238 v~ 239 (292)
T d1fxoa_ 238 IA 239 (292)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=2.9e-39 Score=266.51 Aligned_cols=231 Identities=23% Similarity=0.350 Sum_probs=196.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|+|||||||.||||+|+|...||||+|++|+|||+|+++.+..+|+++++|++++.. +.+.+++.+. ..+++.+.++.
T Consensus 4 MkavIlagG~GtRl~p~t~~~PK~ll~i~~kpii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~~-~~~~~~i~~v~ 82 (295)
T d1lvwa_ 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDG-SQFGVRFSYRV 82 (295)
T ss_dssp CEEEEECCCCCSTTTTTTTSSCGGGSEETTEETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTS-GGGTSEEEEEE
T ss_pred cEEEEECCCCcccCCcccCCCCcccCeECCEEHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhccc-hhcCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999999998875 4555666543 44578888888
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
+.++.||++|+..|.+.++.+. .++++++|+++..++..++..+.....++++++.+..++..||++..+.+ ++|.+
T Consensus 83 e~~~~gta~Al~~a~~~l~~~~--~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~yG~i~~~~~-~~v~~ 159 (295)
T d1lvwa_ 83 QEEPRGIADAFIVGKDFIGDSK--VALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSE-GRVIS 159 (295)
T ss_dssp CSSCCCGGGHHHHTHHHHTTSC--EEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEEEECTT-SBEEE
T ss_pred CCCCCCHHHHHHHHHHHcCCCC--EEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcCCCccccEEEECCC-CcEEE
Confidence 9999999999999999998753 57777777788888999999999999999999999989999999999888 89999
Q ss_pred EeecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcCc--EEEEEeCceEEecCCHHHHHHHHHH
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVENK--LFAMVLPGFWMDIGQPKDYITGLRL 232 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~~--v~~~~~~~~~~di~t~~d~~~a~~~ 232 (256)
+.|||..+.++++++|+|+|++++|..+.+. ......++++.++..+. +..+..+..|.|+|||++|..|+..
T Consensus 160 ~~EKp~~~~s~~~~~Giy~~n~~if~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~ 239 (295)
T d1lvwa_ 160 IEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSF 239 (295)
T ss_dssp EEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHH
T ss_pred EeecccCcccceeecceEEECHHHHHHHHhcCCCcCCCeeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHH
Confidence 9999998888899999999999998766421 12233578888887774 4444555689999999999999887
Q ss_pred HHh
Q 046608 233 YLD 235 (256)
Q Consensus 233 ~~~ 235 (256)
+..
T Consensus 240 i~~ 242 (295)
T d1lvwa_ 240 IET 242 (295)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=1.3e-37 Score=258.04 Aligned_cols=235 Identities=20% Similarity=0.316 Sum_probs=188.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCC-cchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhh-------hccC
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFAN-KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE-------KKLE 72 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g-~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~-------~~~~ 72 (256)
+.|||||||.||||+|+|..+||+|+||+| +|||+|+|+.|..+|+++|+|++++..+.+.+++.+.. +..+
T Consensus 12 ~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~~~ 91 (307)
T d1yp2a2 12 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 91 (307)
T ss_dssp EEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------CC
T ss_pred eEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccccccccccccc
Confidence 469999999999999999999999999987 59999999999999999999999999999988886532 1113
Q ss_pred cEEEeeccCC------cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC--CCcC
Q 046608 73 IKITCSQETE------PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD--EPSK 144 (256)
Q Consensus 73 ~~v~~~~~~~------~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~ 144 (256)
....+..+.. ..|+++++..++..+.....++|++++||+++..++..+++.|+.++.++++...... ....
T Consensus 92 ~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (307)
T d1yp2a2 92 FVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATA 171 (307)
T ss_dssp EEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTT
T ss_pred cceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcceeccchhhhhhhhhhccccceEEEEecccccccc
Confidence 3444433332 3588999999999998755458999999999999999999999999998888776554 3578
Q ss_pred ceeEEEcCCCCeEeEEeecCCCC---------------------CCCeEEEEEEEeCHhhHHhccc----CCCCcchhhH
Q 046608 145 YGVVVMEETMGKVEKFVEKPKNF---------------------VGNKINAGIYLLNPSVLDRIEL----KPTSIEKEVF 199 (256)
Q Consensus 145 ~~~v~~~~~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~~~~l~~----~~~~~~~~~~ 199 (256)
||++.++++ ++|..+.|||... ...+.++|+|+|+++++..+.+ ...++..+++
T Consensus 172 ~gvv~~d~~-~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~~~~d~i 250 (307)
T d1yp2a2 172 FGLMKIDEE-GRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 250 (307)
T ss_dssp SEEEEECTT-SBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHH
T ss_pred cceEEECCC-CcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccchHHHHH
Confidence 999999998 9999999998621 2348899999999999876632 2345667899
Q ss_pred HHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHHhh
Q 046608 200 PEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 200 ~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~~~~ 236 (256)
+.++..+ ++.+++++|+|.|||||++|.+|+..+++.
T Consensus 251 ~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~ 288 (307)
T d1yp2a2 251 PGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 288 (307)
T ss_dssp HHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCS
T ss_pred HHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcC
Confidence 9888877 799999999999999999999999887653
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.5e-34 Score=229.59 Aligned_cols=228 Identities=30% Similarity=0.551 Sum_probs=179.8
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhc----------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK---------- 70 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~---------- 70 (256)
+||||||||.||||+|+|...||||+|++|+|||+|+|+.|.++|+++|+|++++..+.+.+++.+....
T Consensus 3 ~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gkplI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~~~~ 82 (259)
T d1tzfa_ 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAE 82 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEETTEEHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGGG
T ss_pred ceEEEECCCccccCChhhCCCCccceEECCEEHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccchhcc
Confidence 5899999999999999999999999999999999999999999999999999999999999998643210
Q ss_pred ----------cCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC
Q 046608 71 ----------LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD 140 (256)
Q Consensus 71 ----------~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 140 (256)
....+.+..+....++.+++..+.+.+..+. +|+++.+|.+++.+...+++.+.......+.... .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 158 (259)
T d1tzfa_ 83 NRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDE--AFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT--F 158 (259)
T ss_dssp TEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTTSS--CEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE--C
T ss_pred ccchhhhccccccceeEEeccccccccchhhhhhhhccCCC--ceEEeccccccccchhhhhhhhcccccceeeccc--c
Confidence 0122334455567778888888888776643 7999999999999999998888877776665544 3
Q ss_pred CCcCceeEEEcCCCCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEec
Q 046608 141 EPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDI 220 (256)
Q Consensus 141 ~~~~~~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di 220 (256)
..+.++.+.... ..+....+.+. ..+.+.++|+|++++++++.+.....+++.++++.+++.+++.++.++|+|.||
T Consensus 159 ~~~~~~~~~~~~--~~i~~~~~~~~-~~~~~~~~G~y~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~v~~~~~~g~W~di 235 (259)
T d1tzfa_ 159 PPGRFGALDIQA--GQVRSFQEKPK-GDGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPM 235 (259)
T ss_dssp CCCCSEEEEEET--TEEEEEEESCS-CCSCCEECCCEEECGGGGGGCCSTTCCTTTHHHHHHHHTTCEEEEEECSCEEEC
T ss_pred ccccCCceeccc--ceEEeeeeccc-cceeeecceeccccchhhhhcccCcCccHHHHHHHHHhcCCeEEEEeCCEEEEC
Confidence 445666665554 56666665543 445688999999999999999888888888999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 046608 221 GQPKDYITGLRLYLD 235 (256)
Q Consensus 221 ~t~~d~~~a~~~~~~ 235 (256)
|||+||..+++.+.+
T Consensus 236 dt~~d~~~~~~~~~~ 250 (259)
T d1tzfa_ 236 DTLRDKVYLEGLWEK 250 (259)
T ss_dssp CSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHc
Confidence 999999999987765
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=2.3e-34 Score=228.55 Aligned_cols=214 Identities=21% Similarity=0.349 Sum_probs=168.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.||||+|+|...||+|+|++|+|||+|+++.+..+|+++|+|++++..+.+......+ +++++++.+
T Consensus 4 mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gkpli~~~i~~l~~~g~~~i~iv~g~~~e~i~~~~~~~----~i~i~~~~~ 79 (229)
T d1jyka_ 4 VKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLKEKY----GVRLVFNDK 79 (229)
T ss_dssp CEEEEEECSCCGGGTTTTSSSCGGGCEETTEEHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHHHHH----CCEEEECTT
T ss_pred eeEEEECCCCcccCCccccCCCcceeEECCEEHHHHHHHHHHHhCCcccccccccchhhhhhhhhhc----ccccccccc
Confidence 8999999999999999999999999999999999999999999999999999999887775444433 788999989
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
+++.|+++|++.+.+.+++ .+++..+|.+++..+.+.+ ......+....++..++.+..+++ ++|..+
T Consensus 80 ~~~~Gt~~sl~~a~~~l~~----~~ii~~dd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~ 147 (229)
T d1jyka_ 80 YADYNNFYSLYLVKEELAN----SYVIDADNYLFKNMFRNDL-------TRSTYFSVYREDCTNEWFLVYGDD-YKVQDI 147 (229)
T ss_dssp TTTSCTHHHHHTTGGGCTT----EEEEETTEEESSCCCCSCC-------CSEEEEECEESSCSSCCEEEECTT-CBEEEE
T ss_pred ccccccccccccchhhhcc----cccccccccccccchhhhh-------hccccceeeeeeccccceeEEccC-CceeeE
Confidence 9999999999999998864 4777666666665444322 234445555567778888888888 899999
Q ss_pred eecCCCCCCCeEEEEEEEeCHhhHHhcc----c-----C-CCCcchhhHHHHHhcCcEEEEEeCc-eEEecCCHHHHHHH
Q 046608 161 VEKPKNFVGNKINAGIYLLNPSVLDRIE----L-----K-PTSIEKEVFPEIAVENKLFAMVLPG-FWMDIGQPKDYITG 229 (256)
Q Consensus 161 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~----~-----~-~~~~~~~~~~~l~~~~~v~~~~~~~-~~~di~t~~d~~~a 229 (256)
.++|. +.++.+|+|.+++.....+. + . ...+..+++........+.+....+ .|++||||+||.+|
T Consensus 148 ~~~~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a 224 (229)
T d1jyka_ 148 IVDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKL 224 (229)
T ss_dssp ECCCS---SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHH
T ss_pred EEecc---cceEEEEEEEEcHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHH
Confidence 88764 34678899999987654331 1 1 1122345666677777888888877 69999999999999
Q ss_pred HHHH
Q 046608 230 LRLY 233 (256)
Q Consensus 230 ~~~~ 233 (256)
++.+
T Consensus 225 ~~~~ 228 (229)
T d1jyka_ 225 EEIL 228 (229)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8764
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.5e-33 Score=227.37 Aligned_cols=223 Identities=22% Similarity=0.346 Sum_probs=161.9
Q ss_pred Ce--EEEEeCCCCCccccC-CCCCCCcccee-CCcchHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHHhhhhccCcEE
Q 046608 1 MK--ALILVGGFGTRLRPL-TLSVPKPLVDF-ANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKI 75 (256)
Q Consensus 1 m~--aiIlaaG~g~Rl~~~-~~~~pK~ll~i-~g~pli~~~l~~l~~~-~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v 75 (256)
|| |||||||.||||+|+ +..+||+|+|+ +|+|||+|+++++... +++++++++++..+.+.++... +.++
T Consensus 1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~~~-----~~~i 75 (268)
T d2cu2a2 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYAD-----GIRL 75 (268)
T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCS-----SSEE
T ss_pred CCceEEEecCCCcccCCCcccCCCCceeeecCCCCCHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhhcc-----ccce
Confidence 77 899999999999999 56789999997 6899999999999875 5788999998877666543321 3444
Q ss_pred EeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccch--HHHHHH---HHhcCCceEEEEEecCCCcCceeEEE
Q 046608 76 TCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPL--KQMIEF---HRGHGGEASIMVTKVDEPSKYGVVVM 150 (256)
Q Consensus 76 ~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~--~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~v~~ 150 (256)
..+..+.|++.++..++..+....++.++|++||+++..++ ...+.. +.+++..+++.+.+...+..||++..
T Consensus 76 --i~E~~~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~ 153 (268)
T d2cu2a2 76 --LLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPETEYGYIRL 153 (268)
T ss_dssp --EEESSCCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCSSSCEEEE
T ss_pred --eeeeecCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeeccccccccccceEEe
Confidence 34667888988888877665433333899999999887653 333433 23455566666667777899999998
Q ss_pred cCCCC---eEeEEeecCCCC-------CCCeEEEEEEEeCHhhHHhcccC-------------CCCcchhhHH-------
Q 046608 151 EETMG---KVEKFVEKPKNF-------VGNKINAGIYLLNPSVLDRIELK-------------PTSIEKEVFP------- 200 (256)
Q Consensus 151 ~~~~~---~v~~~~ek~~~~-------~~~~~~~Giy~~~~~~~~~l~~~-------------~~~~~~~~~~------- 200 (256)
+++.+ +|.+|.|||... .+.++|+|+|+|+++.+....+. ......+.++
T Consensus 154 ~~~~~~~~~v~~f~EKp~~~~~~~~~~~~~~~N~Giy~f~~~~l~~~~~~~~p~i~~~~~~~~~~~~~~~~f~~l~~iSi 233 (268)
T d2cu2a2 154 GPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKISI 233 (268)
T ss_dssp EEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCH
T ss_pred ccccccchhhheeecccchhhhhhhhccCcccchhhhhcchHHHHHHHHhhhHHHHHHHHHHHhcchHHHHHhhCccccc
Confidence 76522 799999999732 24689999999998877533110 0011112222
Q ss_pred -H--HHhcCcEEEEEeCceEEecCCHHHHHHHH
Q 046608 201 -E--IAVENKLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 201 -~--l~~~~~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
+ |.+..++.+++.++.|.|||||+++.+..
T Consensus 234 DyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~ 266 (268)
T d2cu2a2 234 DYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (268)
T ss_dssp HHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred hhhhhcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence 2 23455899999999999999999999764
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.97 E-value=5.8e-30 Score=205.02 Aligned_cols=225 Identities=23% Similarity=0.321 Sum_probs=177.1
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.|||||||.||||+| ..||||++|+|+|||+|+++.+.++|+++++|++++..+.+..+... ... +....
T Consensus 3 ~AIIlAaG~GtRl~~---~~PK~L~~i~Gkpli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~~-----~~~--~~~~~ 72 (250)
T d1g97a2 3 FAIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG-----QTE--FVTQS 72 (250)
T ss_dssp EEEEECCCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTTT-----TSE--EEECS
T ss_pred EEEEECCCCCCCCCC---CCCceeeEECCeeHHHHHHHHHHHcCCCeEEEecccccchhhhhccc-----ccc--ccccc
Confidence 489999999999998 68999999999999999999999999999999999988766655433 222 23455
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
...|+..++..+...+.....+.+++..+|.++ +.+++++++.+.......++...+...+..++.+..+.+ +.+..+
T Consensus 73 ~~~g~~~~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 151 (250)
T d1g97a2 73 EQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDN-AEVLRI 151 (250)
T ss_dssp SCCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTT-CCEEEE
T ss_pred cccccchHHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceecccCCCceEEEeec-eEEEEe
Confidence 677899999999888876433234444444444 456899999999999999998888888888998888887 888888
Q ss_pred eecCCCC----CCCeEEEEEEEeCHhhHHhc-c------cCCCCcchhhHHHHHhcC-cEEEEEeCceEEe--cCCHHHH
Q 046608 161 VEKPKNF----VGNKINAGIYLLNPSVLDRI-E------LKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMD--IGQPKDY 226 (256)
Q Consensus 161 ~ek~~~~----~~~~~~~Giy~~~~~~~~~l-~------~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~d--i~t~~d~ 226 (256)
.+++... ..++.++|+|+|++..+... . .....+..++++.+++.+ ++.+++++++|.+ |||++||
T Consensus 152 ~~~~~~~~~~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL 231 (250)
T d1g97a2 152 VEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVAL 231 (250)
T ss_dssp ECGGGCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHH
T ss_pred eccccccccccccceeeeeeeecchHHHHHHHHHhccCcchhhHHHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHH
Confidence 8876532 35689999999998766543 1 112334578888888877 8999999998855 8899999
Q ss_pred HHHHHHHHhhh
Q 046608 227 ITGLRLYLDFL 237 (256)
Q Consensus 227 ~~a~~~~~~~~ 237 (256)
..|++.+.+++
T Consensus 232 ~~ae~~~~~~~ 242 (250)
T d1g97a2 232 ATAESVMRRRI 242 (250)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887654
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.1e-28 Score=197.48 Aligned_cols=222 Identities=24% Similarity=0.332 Sum_probs=165.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|++||||||.||||+| ..||||++++|+|||+|+|+.+..+++++|+|++++..+.+.++... ....+..+
T Consensus 3 MkvIILAAG~GtRm~~---~~PKpli~i~gkpiie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~~------~~~~~~~~ 73 (248)
T d2oi6a2 3 MSVVILAAGKGTRMYS---DLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKD------DNLNWVLQ 73 (248)
T ss_dssp EEEEEECCSCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCCC------TTEEEEEC
T ss_pred ceEEEECCCCCCCCCC---CCCeeeEEECChhHHHHHHHHHHHcCCcEEEeccCcccceeeeeccc------cccccccc
Confidence 8999999999999988 78999999999999999999999999999999999998777665433 33344566
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc--hHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP--LKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
..+.|+++++..+...+..+. .+++..+|..+... +.... ........+++++...++..++.+..+. +...
T Consensus 74 ~~~~g~~~~~~~~~~~i~~~~--~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 147 (248)
T d2oi6a2 74 AEQLGTGHAMQQAAPFFADDE--DILMLYGDVPLISVETLQRLR--DAKPQGGIGLLTVKLDDPTGYGRITREN--GKVT 147 (248)
T ss_dssp SSCCCHHHHHHHHGGGSCTTS--EEEEEETTCTTCCHHHHHHHH--HHCCTTSEEEEEEECSCCTTSCEEEEET--TEEE
T ss_pred ccCcccHHHHHhhhhhhcccc--ceeeecCccccccchhHHHHH--HHhhccccceeEEEecCCcccccccccc--Cccc
Confidence 778999999999999987754 68888888866532 22222 2334445667777777888888877665 4554
Q ss_pred EEeecCC----CCCCCeEEEEEEEeCHhhHHh-cc---cC---CCCcchhhHHHHHhcC-cEEEEEeCceEE--ecCCHH
Q 046608 159 KFVEKPK----NFVGNKINAGIYLLNPSVLDR-IE---LK---PTSIEKEVFPEIAVEN-KLFAMVLPGFWM--DIGQPK 224 (256)
Q Consensus 159 ~~~ek~~----~~~~~~~~~Giy~~~~~~~~~-l~---~~---~~~~~~~~~~~l~~~~-~v~~~~~~~~~~--di~t~~ 224 (256)
.+.+++. ........+|.|.|+.+.+.. +. .. ...+..++++.+++.| ++.++..++.|- .||||+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~e 227 (248)
T d2oi6a2 148 GIVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRL 227 (248)
T ss_dssp EEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHH
T ss_pred eeeeccCCChhhhhhhhhhhhhhccchHHHHHHHHHhhccccchhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHH
Confidence 4444322 223457899999999876643 32 11 1223368889999887 888888877662 488999
Q ss_pred HHHHHHHHHHhhh
Q 046608 225 DYITGLRLYLDFL 237 (256)
Q Consensus 225 d~~~a~~~~~~~~ 237 (256)
||..|++.+.+++
T Consensus 228 DL~~ae~i~~~~~ 240 (248)
T d2oi6a2 228 QLSRLERVYQSEQ 240 (248)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876544
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=8.8e-20 Score=143.15 Aligned_cols=211 Identities=13% Similarity=0.110 Sum_probs=134.7
Q ss_pred Ce-EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEee
Q 046608 1 MK-ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~-aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~ 78 (256)
|+ |||||||.|+||+. ..||+|++++|+|||+|+|+.+..++ +++|+|+++...... +..... ....+.+.
T Consensus 3 M~iAIILAaG~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~Iivv~~~~~~~~---~~~~~~-~~~~~~~~ 75 (221)
T d1vpaa_ 3 MNVAILLAAGKGERMSE---NVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEV---VEKRVF-HEKVLGIV 75 (221)
T ss_dssp CEEEEEEECCCCGGGCC---SSCGGGCEETTEETTHHHHHHHHHCTTCSEEEEEECGGGHHH---HHTTCC-CTTEEEEE
T ss_pred CeEEEEccCcCcccCCC---CCCcceeEECCEEHHHHHHHHHHhccccccceEEecchhhhH---HHhhhc-cccccccc
Confidence 44 59999999999975 78999999999999999999999884 899999986554322 222111 12233322
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
. ...+...++..++..+.....+.+++++||..+ + ..+.++++....... .+......+ .....+. +.
T Consensus 76 ~--~~~~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~--~~~~~~~~d----~~~~~~~--~~ 145 (221)
T d1vpaa_ 76 E--GGDTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALKNSD----ALVRVEN--DR 145 (221)
T ss_dssp E--CCSSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEECCS----EEEEEET--TE
T ss_pred c--ccccccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhccccc--ccccccccc----eeEeecC--cc
Confidence 2 233455677777777655444489999999944 3 347788887765543 233333222 2233332 33
Q ss_pred EeEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
...+ ++ ...+...+...|+.+.+....++...+ .|....+...| ++..+..+...+.|+|||||..|+..+.
T Consensus 146 ~~~~---~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~-tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~llk 218 (221)
T d1vpaa_ 146 IEYI---PR--KGVYRILTPQAFSYEILKKAHENGGEW-ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAR 218 (221)
T ss_dssp EEEE---CC--TTEEEEEEEEEEEHHHHHHHHTTCCCC-SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHH
T ss_pred ceec---ch--HHHHHhhhhhhhhHHHHHHHHHhCCCC-ccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHHh
Confidence 3333 11 223556677788877777665444444 45556666656 6776665444457999999999976553
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.82 E-value=2.1e-19 Score=141.43 Aligned_cols=211 Identities=13% Similarity=0.176 Sum_probs=125.1
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.+||||||.|+||+. ..||+|++++|+|||+|+++.+..++ +++|+|++++.... .++.+...++..+.+..
T Consensus 6 ~~IIlAaG~GtRm~~---~~pK~l~~l~Gkpli~~~l~~~~~~~~~~~Iivv~~~~~~~---~~~~~~~~~~~~~~~~~- 78 (226)
T d1w77a1 6 SVILLAGGQGKRMKM---SMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRD---IFEEYEESIDVDLRFAI- 78 (226)
T ss_dssp EEEEECCC----------CCCTTTSEETTEEHHHHHHHHHHTCTTEEEEEEECCGGGTH---HHHTTTTSCSSEEEEEC-
T ss_pred EEEEeCCccCccCcC---CCCceeeEECCeeHHHHHHHHHHhhccccceeeccchhhhh---hhhcccccccccccccc-
Confidence 589999999999986 78999999999999999999999885 78899988755433 33333333355554432
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
.+....+|+..++..+.... +.+++++||..+ . ..+.++++.+..++. .+...+..++.... ..+ +.+.
T Consensus 79 -gg~~r~~sv~~~l~~~~~~~-~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~--~i~~~~~~d~~~~~----~~~-~~~~ 149 (226)
T d1w77a1 79 -PGKERQDSVYSGLQEIDVNS-ELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLGVPAKATIKEV----NSD-SLVV 149 (226)
T ss_dssp -CCSSHHHHHHHHHHTSCTTC-SEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEEEECCSCCCCB----CTT-SCBC
T ss_pred -ccchhhhhhhhhHhhhcccc-ccceecccccccccHHHhhhhhhhhhccCc--eeeccccccceEEE----ccC-Ccee
Confidence 23335688999998886543 389999999944 3 347888887776654 33333333322111 111 2222
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhc----ccCCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRI----ELKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l----~~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~ 233 (256)
...+ ....+..-+.+.|+.+.+... .+....+ .|....+...| ++..+..+..=+.|+||+|+..|+..+
T Consensus 150 ~~~~----r~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~-TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL 224 (226)
T d1w77a1 150 KTLD----RKTLWEMQTPQVIKPELLKKGFELVKSEGLEV-TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL 224 (226)
T ss_dssp ----------CCEEEEEEEEECHHHHHHHHHHHHHSCCCC-CC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred eccc----chhhhHHHHHHhHhhHHHHHHHHHHHhcCCCc-CcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHh
Confidence 1111 112355567788987766543 2333333 33223333334 676665443334699999999998654
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.1e-19 Score=142.76 Aligned_cols=211 Identities=15% Similarity=0.144 Sum_probs=131.5
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~-~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.|||||||.|+||+. ..||+|.+++|+|||+|+|+.+.++ ++++|+|+++++...+.+..... ...+.+..
T Consensus 5 ~AIILAaG~gtRm~~---~~pK~L~~i~gkplI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~~----~~~v~~~~- 76 (225)
T d1i52a_ 5 CAVVPAAGFGRRMQT---ECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLAN----HPQITVVD- 76 (225)
T ss_dssp EEEEEECCCCGGGCC---SSCGGGSEETTEEHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGGG----CTTEEEEE-
T ss_pred EEEEeCCCcceeCCC---CCCcceeEECCEEHHHHHHHHHHhCccccccccccchhhhhhhhhhhcc----cccccccc-
Confidence 479999999999986 7899999999999999999999988 48999999987755443333221 12222222
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
...+..++++.+...+.+.+ .+++.++|..+ . ..+.+++....... ...+...+..++..+ ..... +...
T Consensus 77 -~~~~~~~sv~~~~~~~~~~~--~vl~~~~~~p~i~~~~~~~~~~~~~~~~-~~~v~~~~~~d~~~~---~~~~~-~~~~ 148 (225)
T d1i52a_ 77 -GGDERADSVLAGLKAAGDAQ--WVLVHDAARPCLHQDDLARLLALSETSR-TGGILAAPVRDTMKR---AEPGK-NAIA 148 (225)
T ss_dssp -CCSSHHHHHHHHHHTSTTCS--EEEECCTTCTTCCHHHHHHHHGGGGTCS-SCEEEEEECCSCEEE---ECTTS-SSEE
T ss_pred -CCcchhHHHHhhhcccCccc--eeeeeccCCCCCCHHHHHHHHhhhhhcc-cccccccceeeccch---hcccc-cccc
Confidence 23345689999999887543 78888899843 3 33666666555444 344455554433211 11222 3333
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhc----ccCCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRI----ELKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l----~~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~ 233 (256)
...++. ......+...|..+.+... .+....+ .|....+...| ++..+..+..=+.|+|||||..|+..+
T Consensus 149 ~~~~~~----~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~-tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l 223 (225)
T d1i52a_ 149 HTVDRN----GLWHALTPQFFPRELLHDCLTRALNEGATI-TDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYL 223 (225)
T ss_dssp EEECCT----TCEEEEEEEEEEHHHHHHHHHHHHHTTCCC-CSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred cccchH----HHHHHhhhhhhhhHHHHHHHHHHHhcCCCC-CcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHh
Confidence 333221 1233345566666554433 2223333 56666666655 676666432225699999999997643
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.82 E-value=3.7e-18 Score=135.79 Aligned_cols=217 Identities=18% Similarity=0.137 Sum_probs=146.7
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
-|||+|+|.++|+.. |+|.+++|+|||+|+++++..+++++|+|++ +.+.+.+...++ +..+.+..+.
T Consensus 3 i~iIpAR~gSkrip~------KnL~~i~GkpLI~~~i~~a~~s~i~~iiVsT--d~~~i~~~~~~~----g~~v~~~~~~ 70 (246)
T d1vh1a_ 3 VVIIPARYASTRLPG------KPLVDINGKPMIVHVLERARESGAERIIVAT--DHEDVARAVEAA----GGEVCMTRAD 70 (246)
T ss_dssp EEEEECCCCCC--CC------TTTCEETTEEHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHT----TCEEEECC--
T ss_pred EEEEecCCCCcCCCC------chhhhcCCccHHHHHHHHHHHcCCCcEEEEe--cCccccchhhcc----cccceeeccc
Confidence 489999999999955 9999999999999999999999999999999 566677776655 6777766655
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc--cchHHHHHHHHhcCCceEEEEEecCCCc-----CceeEEEcCCC
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--YPLKQMIEFHRGHGGEASIMVTKVDEPS-----KYGVVVMEETM 154 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~v~~~~~~ 154 (256)
...|+ .+...+.......+.+.++.+.||..+. ..+..++..+.....+............ ....+..+.+
T Consensus 71 ~~~~~-~~~~~~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~v~~~~- 148 (246)
T d1vh1a_ 71 HQSGT-ERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAE- 148 (246)
T ss_dssp ---CH-HHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCHHHHTCTTSCEEEECTT-
T ss_pred ccccc-hHHHHHHHhhcccccceeeeeccccccchhhHHHHHhhhhcccccccccccccccchhcccCCCcceeeeccc-
Confidence 55454 4444455554433333789999999553 4578888888888777776666554321 2223455666
Q ss_pred CeEeEEeecCCC-------------CCCCeEEEEEEEeCHhhHHhcccCCCCcc-----hhhHHHHHhcCcEEEEEeCc-
Q 046608 155 GKVEKFVEKPKN-------------FVGNKINAGIYLLNPSVLDRIELKPTSIE-----KEVFPEIAVENKLFAMVLPG- 215 (256)
Q Consensus 155 ~~v~~~~ek~~~-------------~~~~~~~~Giy~~~~~~~~~l~~~~~~~~-----~~~~~~l~~~~~v~~~~~~~- 215 (256)
+.+..+.+.+.. ....+..+|+|+|+++.+.....-..+.. -+.++.+..+.++.++.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~s~~E~~e~le~lR~i~~g~~i~~~~~~~~ 228 (246)
T d1vh1a_ 149 GYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEV 228 (246)
T ss_dssp SBEEEEESSCSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSC
T ss_pred CcccccccccchhhhhhhhhhhhccchhhheecceeeechhhhhhhccCCCChHHHHHhHHHHHHHHCCCceEEEEecCC
Confidence 777777654321 12346789999999998876532211111 13344444444888888876
Q ss_pred eEEecCCHHHHHHHHHH
Q 046608 216 FWMDIGQPKDYITGLRL 232 (256)
Q Consensus 216 ~~~di~t~~d~~~a~~~ 232 (256)
..+||||++||..|++.
T Consensus 229 ~~~~IDt~~Dl~~a~k~ 245 (246)
T d1vh1a_ 229 PGTGVDTPEDLERVRAE 245 (246)
T ss_dssp CCCCCCSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHhc
Confidence 56799999999999764
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.81 E-value=7.4e-18 Score=133.84 Aligned_cols=220 Identities=19% Similarity=0.174 Sum_probs=145.7
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
+||+|+|.++|+.. |+|++++|+|||+|+++++..++ +++|+|++. .+.+.+....+ +..+.+....
T Consensus 5 ~iIpAR~~SkRl~~------Knl~~i~GkPli~~~i~~a~~~~~~d~Iiv~td--~~~i~~~~~~~----~~~~~~~~~~ 72 (245)
T d1h7ea_ 5 IVIPARYGSSRLPG------KPLLDIVGKPMIQHVYERALQVAGVAEVWVATD--DPRVEQAVQAF----GGKAIMTRND 72 (245)
T ss_dssp EEEECCSCCSSSTT------GGGCEETTEEHHHHHHHHHHTCTTCCEEEEEES--CHHHHHHHHHT----TCEEEECCSC
T ss_pred EEEcCCCCCcCCCC------ccccccCCccHHHHHHHHHHhCCCCCeEEEecc--cccchhhhhhc----CceEEEecCc
Confidence 78999999999955 99999999999999999999885 888888884 44555555554 5666654433
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc--cchHHHHHHHHhcCCceEEEEEecCCC-----cCceeEEEcCCC
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--YPLKQMIEFHRGHGGEASIMVTKVDEP-----SKYGVVVMEETM 154 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~v~~~~~~ 154 (256)
..++..++..+...+..+ .++.+.||..+. ..+..++..+................. ...........
T Consensus 73 -~~~~~~~~~~~~~~~~~d---~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~~~- 147 (245)
T d1h7ea_ 73 -HESGTDRLVEVMHKVEAD---IYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTR- 147 (245)
T ss_dssp -CSSHHHHHHHHHHHSCCS---EEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTT-
T ss_pred -cccccHHHHHHHHhcCCC---EEEEecchhhhcccccchhhhhcccccccccccccccccccccccCCcceeeccchh-
Confidence 334556777888888765 788899999553 347778887765555443333322111 11222232332
Q ss_pred CeEeEEeecCCCC------CCCeEEEEEEEeCHhhHHhcccCCCCc-c--h--hhHHHHHhcCcEEEEEeCceEEecCCH
Q 046608 155 GKVEKFVEKPKNF------VGNKINAGIYLLNPSVLDRIELKPTSI-E--K--EVFPEIAVENKLFAMVLPGFWMDIGQP 223 (256)
Q Consensus 155 ~~v~~~~ek~~~~------~~~~~~~Giy~~~~~~~~~l~~~~~~~-~--~--~~~~~l~~~~~v~~~~~~~~~~di~t~ 223 (256)
+.+..+...+... ......+|+|+|+++.+.....-..+. + . +.++.+-.+.++.++..++.+++|||+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~ 227 (245)
T d1h7ea_ 148 QDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTP 227 (245)
T ss_dssp CBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSH
T ss_pred hhhhhhhhhhhhhhhcccccccceeeeeEEeeeccccccccccCChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCH
Confidence 4555555443311 123678999999999887653211111 0 0 234433344489889888888899999
Q ss_pred HHHHHHHHHHHhhhcc
Q 046608 224 KDYITGLRLYLDFLQK 239 (256)
Q Consensus 224 ~d~~~a~~~~~~~~~~ 239 (256)
+||..|+..+.+++.+
T Consensus 228 ~Dl~~a~~il~~~~~~ 243 (245)
T d1h7ea_ 228 ACLEKVRALMAQELAE 243 (245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999998887776543
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.81 E-value=1.3e-17 Score=133.10 Aligned_cols=220 Identities=16% Similarity=0.164 Sum_probs=148.3
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.+||||+|.++|+.. |+|.+++|+|||+|+++++..+++++|+|++ +...+......+ +..+.+..+.
T Consensus 3 ~~iIpAR~gSkRlp~------Knl~~i~GkpLI~~~i~~a~~s~i~~IiVsT--d~~~i~~~~~~~----~~~~~~~~~~ 70 (255)
T d1vica_ 3 TVIIPARFASSRLPG------KPLADIKGKPMIQHVFEKALQSGASRVIIAT--DNENVADVAKSF----GAEVCMTSVN 70 (255)
T ss_dssp EEEEECCCCCSSSTT------GGGCEETTEEHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHT----TCEEEECCCS
T ss_pred EEEEecCCCCCCCCC------chhhhhCCcCHHHHHHHHHHHCCCCeEEEEc--CCcccchhhhhh----ccccceeeec
Confidence 589999999999944 9999999999999999999999999999988 455566666554 6677776666
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc--cchHHHHHHHHhcCCceEEEEEecCC-----CcCceeEEEcCCC
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--YPLKQMIEFHRGHGGEASIMVTKVDE-----PSKYGVVVMEETM 154 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~v~~~~~~ 154 (256)
...|+..+...+ ......+.+.++.+.||..+. ..++.+++.+..+....+........ .........+.+
T Consensus 71 ~~~~~~~~~~~~-~~~~~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 148 (255)
T d1vica_ 71 HNSGTERLAEVV-EKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKD- 148 (255)
T ss_dssp SCCHHHHHHHHH-HHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTT-
T ss_pred cCCcchhhHHHH-HHhhccCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccchhhccCccceeeeeccC-
Confidence 555554444444 333332333788899999553 34788888888777777666655432 122334455555
Q ss_pred CeEeEEeecCCC-----------------CCCCeEEEEEEEeCHhhHHhcccCCCCcch-----hhHHHHHhcCcEEEEE
Q 046608 155 GKVEKFVEKPKN-----------------FVGNKINAGIYLLNPSVLDRIELKPTSIEK-----EVFPEIAVENKLFAMV 212 (256)
Q Consensus 155 ~~v~~~~ek~~~-----------------~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~-----~~~~~l~~~~~v~~~~ 212 (256)
+.+..+.+.+.. ........|+|+++++.+........+... +.++.+..+.++.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~le~~e~le~lr~l~ng~~I~~~~ 228 (255)
T d1vica_ 149 GYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVEL 228 (255)
T ss_dssp SBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHHHTTCCEEEEE
T ss_pred CcccccccccccccchhhhhccchhhcccccchheeeeeecccHHHHhhhhccCCChhHHHHhHHHHHHHHCCCceeEEE
Confidence 677666654321 123366899999999988754321111100 1233344444788777
Q ss_pred eCc-eEEecCCHHHHHHHHHHHHh
Q 046608 213 LPG-FWMDIGQPKDYITGLRLYLD 235 (256)
Q Consensus 213 ~~~-~~~di~t~~d~~~a~~~~~~ 235 (256)
... .++||||++||..|+..+.+
T Consensus 229 ~~~~~~idIDt~eDl~~ae~ilkk 252 (255)
T d1vica_ 229 AKEVPAVGVDTAEDLEKVRAILAA 252 (255)
T ss_dssp CSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred eCCCCCcCCCCHHHHHHHHHHHHH
Confidence 766 57899999999999876543
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.80 E-value=5.2e-19 Score=139.13 Aligned_cols=210 Identities=15% Similarity=0.181 Sum_probs=116.4
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
-|||||||.|+||+. ..||+|++++|+|||+|+++.+.+++ ++.++||+++.. .+.+.+..... .+... .
T Consensus 5 iAIIlAaG~gtRm~~---~~pK~l~~i~gkpli~~~i~~~~~~~~~~~iivv~~~~~-~~~~~~~~~~~--~~~~~-~-- 75 (226)
T d1vgwa_ 5 IALIPAAGIGVRFGA---DKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPED-TFADKVQTAFP--QVRVW-K-- 75 (226)
T ss_dssp EEEEECC-------------CCSCCEETTEEHHHHHHHHHHTCTTCCEEEEECCTTC-STHHHHHHHCT--TSEEE-C--
T ss_pred EEEEeCCCCcccCCc---CCCeeeeEECCEEHHHHHHHHHHhCCCccccceecchhh-hhhhhhccccc--ceeec-c--
Confidence 389999999999975 78999999999999999999999986 677877776554 33344433221 22221 1
Q ss_pred CCcCCCcHHHHHHHhhhc----CCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCC
Q 046608 81 TEPLGTAGPLALARDKLI----DDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETM 154 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~----~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~ 154 (256)
..+.....++..++..+. ....+.+++++||..+ + ..+.++++.+...+.+++ ...+..+ ..... .+
T Consensus 76 ~g~~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i-~~~~~~~----~~~~~-~~- 148 (226)
T d1vgwa_ 76 NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGI-LAVPVAD----TLKRA-ES- 148 (226)
T ss_dssp CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEE-EEEECCS----CEEEE-SS-
T ss_pred ccccccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhccccccee-ecccccc----cceec-cC-
Confidence 222233455555554442 2222378899999843 3 347888888777666544 3433322 22222 33
Q ss_pred CeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhc-ccC-CCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHH
Q 046608 155 GKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-ELK-PTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLR 231 (256)
Q Consensus 155 ~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l-~~~-~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~ 231 (256)
+.+....+... ......-..|..+.+... ... ...+ .|....+...+ ++..+.-+...+.|+||+|+..|+.
T Consensus 149 ~~i~~~~~r~~----~~~~~~p~~f~~~~l~~~~~~~~~~~~-tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~ 223 (226)
T d1vgwa_ 149 GQISATVDRSG----LWQAQTPQLFQAGLLHRALAAENLGGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRL 223 (226)
T ss_dssp SBEEEEECCTT----EEEEEEEEEEEHHHHHHHHHC----CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHH
T ss_pred CeEEeccchHH----HHHHHhhhcccHHHHHHHHHHhhcCCC-CcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHH
Confidence 56666554321 111222345555555433 222 2222 45444555545 6776665545568999999999975
Q ss_pred H
Q 046608 232 L 232 (256)
Q Consensus 232 ~ 232 (256)
.
T Consensus 224 l 224 (226)
T d1vgwa_ 224 L 224 (226)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.5e-17 Score=126.79 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=77.4
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.+||||||.|+||+. .||+|++++|+|||+|+++.+... +.+++|+++...+.. .. .++++......
T Consensus 5 ~~iILAgG~ssRmG~----~~K~ll~~~g~~ll~~~l~~l~~~-~~~ivv~~~~~~~~~----~~----~~~~v~~d~~~ 71 (188)
T d1e5ka_ 5 TGVVLAGGKARRMGG----VDKGLLELNGKPLWQHVADALMTQ-LSHVVVNANRHQEIY----QA----SGLKVIEDSLA 71 (188)
T ss_dssp EEEEECCCCCSSSCS----SCGGGSEETTEEHHHHHHHHHHHH-CSCEEEECSSSHHHH----HT----TSCCEECCCTT
T ss_pred eEEEEcCCCCcCCCC----CCcccCEECCEehhHHHHhhhccc-ccccccccCccHHhh----hh----cCCCccccccc
Confidence 589999999999964 379999999999999999999887 677888887654321 11 14555433333
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccc-hHHHHH
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYP-LKQMIE 123 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~-~~~~~~ 123 (256)
...|...++..+......+ .+++++||+.+ ..+ +..+++
T Consensus 72 ~~~~~~~g~~~~~~~~~~~---~vlv~~~D~P~i~~~~i~~L~~ 112 (188)
T d1e5ka_ 72 DYPGPLAGMLSVMQQEAGE---WFLFCPCDTPYIPPDLAARLNH 112 (188)
T ss_dssp CCCSHHHHHHHHHHHCCSS---EEEEEETTCTTCCTTHHHHHHH
T ss_pred cccchhHHHHHHHHhcccc---eEEEeccCCCCCCHHHHHHHHH
Confidence 4456667777777776665 89999999944 444 556655
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=7.7e-18 Score=132.74 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=87.6
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.|||||||+|+||++++. .||+|++++|+|||+|+++.+.+++++++++++++.... .... ...
T Consensus 4 ~avIlA~G~~~r~~r~g~-~~K~L~~i~Gkpli~~~~~~l~~~~~~~vvv~~~~~~~~------------~~~~---~~~ 67 (231)
T d2dpwa1 4 SAIVLAGGKEAWAERFGV-GSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVP------------APAL---TLP 67 (231)
T ss_dssp EEEEECCCBCSGGGTTTC-SBGGGSEETTEETHHHHHHHHHHTTCEEEEESCCSSCSS------------CCSE---EEC
T ss_pred eEEEECCCCCCCCCCCCC-CCceeeEECCeeHHHHHHHHHHhcCCCeEEeeeeccccc------------eeee---ecc
Confidence 689999999999988763 479999999999999999999999999999888765311 0111 123
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEec
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKV 139 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~ 139 (256)
...|...++..+++.+.+ .++++.||..+ + ..++.+++.+.+ .++++.+.+.
T Consensus 68 ~~~~~~~~v~~al~~~~~----~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~ 121 (231)
T d2dpwa1 68 DRGGLLENLEQALEHVEG----RVLVATGDIPHLTEEAVRFVLDKAPE--AALVYPIVPK 121 (231)
T ss_dssp CCSSHHHHHHHHHHTCCS----EEEEEETTCTTCCHHHHHHHHHHCCS--CSEEEEEEEH
T ss_pred cchHHHHHHHHHHHhhcC----ceEEeeCCCccCCHHHHHHHHHHhhh--cCceEEEEec
Confidence 466888999999998864 69999999943 3 447888876543 3444444443
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.70 E-value=3e-16 Score=122.66 Aligned_cols=203 Identities=11% Similarity=0.117 Sum_probs=135.9
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
|||+|+|.++|+.. |+|++++|+|||+|+|+.+..++ +++|+|++ +.+.+.+.+..+ +..+......
T Consensus 7 aiIpar~~S~R~p~------K~l~~i~gkpLi~~~i~~~~~s~~~~~Iiv~t--d~~~i~~i~~~~----~~~~~~~~~~ 74 (225)
T d1eyra_ 7 AVILARQNSKGLPL------KNLRKMNGISLLGHTINAAISSKCFDRIIVST--DGGLIAEEAKNF----GVEVVLRPAE 74 (225)
T ss_dssp EEEECCSCCSSSTT------GGGCEETTEEHHHHHHHHHHHHTCCSEEEEEE--SCHHHHHHHHHT----TCEEEECCHH
T ss_pred EEEccCCCCcCCCC------ccccccCCeEHHHHHHHHHHHcCCCceEEEee--ccchhhhhhhhh----cceeeeeccc
Confidence 79999999999944 99999999999999999999997 68888877 556666666655 4555444332
Q ss_pred ---CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc--cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 82 ---EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 82 ---~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
...+....+..+.+.+... .+.++++.||..+. ..++++++.+.....+..+.+........+..+..+ + +.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~-~~ 151 (225)
T d1eyra_ 75 LASDTASSISGVIHALETIGSN-SGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHHPLKTLLQIN-N-GE 151 (225)
T ss_dssp HHSTTCCHHHHHHHHHHHHTCC-SEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSCTTSCEEECS-S-SC
T ss_pred cccccccchhhccccccccccc-cceEEEeeccccccccccccccceeeccccccccceeecccccccccccccc-c-cc
Confidence 2223345566676666543 23899999999553 448999988888877777766665544444444433 3 44
Q ss_pred EeEEeecCC-------CCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCc-eEEecCCHHHHHH
Q 046608 157 VEKFVEKPK-------NFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPG-FWMDIGQPKDYIT 228 (256)
Q Consensus 157 v~~~~ek~~-------~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~-~~~di~t~~d~~~ 228 (256)
...+..... .......+.++|+++.+.+..-.. + + .+++..+.++. .-+||||++||..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~y~~~g~iy~~~~~~l~~~~~----~----~-----~~~~~~~~i~~~~~~dIdt~eDl~~ 218 (225)
T d1eyra_ 152 YAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIANNC----F----F-----IAPTKLYIMSHQDSIDIDTELDLQQ 218 (225)
T ss_dssp EEESSCGGGGTSCGGGSCCEEEEEEEEEEEEHHHHHHHTS----S----C-----CSSCEEEECCTTTTCCCCSHHHHHH
T ss_pred ccccccccccccccccCcceeeecceeEEeeHHHHHHcCC----c----c-----CCCeEEEEcCccceECCCCHHHHHH
Confidence 433322111 111225678899999888765221 1 0 13455555544 4579999999999
Q ss_pred HHHHH
Q 046608 229 GLRLY 233 (256)
Q Consensus 229 a~~~~ 233 (256)
|+..+
T Consensus 219 ae~i~ 223 (225)
T d1eyra_ 219 AENIL 223 (225)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 97654
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=99.69 E-value=4.2e-17 Score=125.66 Aligned_cols=195 Identities=15% Similarity=0.178 Sum_probs=120.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
+.+||||||.|+||+. ..||+|++++|+|||.|+++.+.... ++.|+|++.. .+ ++..+.. .+.+.
T Consensus 2 is~IILAaG~g~Rmg~---~~pK~~~~i~gkpii~~~l~~~~~~~~~~~Ivvv~~~-~~----~~~~~~~--~~~~v--- 68 (205)
T d1w55a1 2 MSLIMLAAGNSTRFNT---KVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSN-IT----YMKKFTK--NYEFI--- 68 (205)
T ss_dssp EEEEEECCSCCTTTCS---SSCGGGCEEBTEEHHHHHHHHHHTTSCCSCEEEEESC-HH----HHHTTCS--SSEEE---
T ss_pred eEEEEeCCccCeeCCc---CCCceeEEECCEEHHHHHHHHHHhhcccccccccccc-cc----ccccccc--ccccc---
Confidence 3689999999999986 78999999999999999999999875 6777776543 22 2333321 23333
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-cc-chHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EY-PLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKV 157 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (256)
..+.....|++.+++.++.+ .+++++||..+ +. .+.++++.+..+ ++++.+.+..+...+..-..+. ..+
T Consensus 69 -~Gg~~r~~Sv~~gl~~~~~~---~VlIhd~~rP~i~~~~i~~li~~~~~~--~~~i~~~~~~dti~~~~~~~~R--~~l 140 (205)
T d1w55a1 69 -EGGDTRAESLKKALELIDSE---FVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALKVADTTLFDNEALQR--EKI 140 (205)
T ss_dssp -ECCSSHHHHHHHHHTTCCSS---EEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEECCCSCEEETTEEECG--GGC
T ss_pred -ccccchhhhhhhhhhhhhhc---ceeeeccCcccCcHHHHHHHHhhhhcc--cccccccccccccccccccccc--hhe
Confidence 13334568899999998665 79999999943 43 378888765544 4666666654432110000111 011
Q ss_pred eEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHH
Q 046608 158 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
... ..| -.|+.+.+....++...+ .|-...+...| ++..++-+..=+-|+||+|+..|+
T Consensus 141 ~~~-qTP------------Q~f~~~~l~~a~~~~~~~-tDd~~~~~~~g~~v~~i~g~~~N~KIT~~eDl~~~e 200 (205)
T d1w55a1 141 KLI-QTP------------QISKTKLLKKALDQNLEF-TDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD 200 (205)
T ss_dssp CEE-CSC------------EEEEHHHHHHHTSSCCCC-SSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred eee-ecc------------hhhhhHHHHHHHHcCCCC-CcHHHHHHHcCCCEEEEecCcccCCCCCHHHHHHhc
Confidence 111 112 245556666554444444 34334444444 666665443335699999998763
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=1.1e-15 Score=119.73 Aligned_cols=205 Identities=14% Similarity=0.147 Sum_probs=129.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
+.|||+|+|.++|+.. |+|++++|+|||+|+++++..++ +++|+|++ +.+.+.+....+ ++.+....
T Consensus 4 i~aiIpaR~~S~Rlp~------K~l~~i~gkpLi~~~i~~~~ks~~id~Iivst--d~~~i~~~~~~~----~~~~~~~~ 71 (228)
T d1qwja_ 4 LAALVLARGGSKGIPL------KNIKRLAGVPLIGWVLRAALDAGVFQSVWVST--DHDEIENVAKQF----GAQVHRRS 71 (228)
T ss_dssp EEEEEECCSCCSSSSC------TTTSEETTEEHHHHHHHHHHHHTCCSEEEEEE--SCHHHHHHHHHT----TCEEEECC
T ss_pred EEEEeccCCCCCCCCC------cchhhhCCeeHHHHHHHHHHhcCCcceEEEec--chhhhhhhhhhc----Cccccccc
Confidence 3699999999999944 99999999999999999999987 78888887 455666666654 56665544
Q ss_pred cCCcCCC---cHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCC
Q 046608 80 ETEPLGT---AGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETM 154 (256)
Q Consensus 80 ~~~~~g~---~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~ 154 (256)
.....+. .+.+..+....... +.++++.+|..+ ...++++++.+...+.+.++.+....... +..+.....
T Consensus 72 ~~~~~~~~~~~~~i~~~~~~~~~~--~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~- 147 (228)
T d1qwja_ 72 SETSKDSSTSLDAIVEFLNYHNEV--DIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFR-WSEIQKGVR- 147 (228)
T ss_dssp GGGSSTTCCHHHHHHHHHTTCTTC--SEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCCE-ECCCCSSTT-
T ss_pred cccccccchhhhhhhhcccccccc--ceeeeecccccccCchhhhhhhhhhhccCcccccccccccccc-chhhhhhcc-
Confidence 3322333 33444444444332 278888899954 34589999998888888877665543221 111111110
Q ss_pred CeEeE--Ee--ecC-CC--CCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCc-eEEecCCHHHH
Q 046608 155 GKVEK--FV--EKP-KN--FVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPG-FWMDIGQPKDY 226 (256)
Q Consensus 155 ~~v~~--~~--ek~-~~--~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~-~~~di~t~~d~ 226 (256)
+.... +. ..+ ++ +.....++++|+++.+++.. ..+. ..+...+.+.. .-+||||++||
T Consensus 148 ~~~~~~~~~~~~~~~~qd~~~~y~~ng~~~~~k~~~~~~-----~~~~---------~~k~~~~~i~~~~~idIDt~eD~ 213 (228)
T d1qwja_ 148 EVTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLIEM-----GYLQ---------GGKMAYYEMRAEHSVDIDVDIDW 213 (228)
T ss_dssp CCCCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHHHT-----TCSS---------CSSEEEEECCGGGCCCHHHHCSH
T ss_pred ccccchhhhhhhccccccccceeeeeeEEEEEeHHHHhh-----CCcC---------CCCEEEEEcCccceECCCCHHHH
Confidence 00000 00 001 11 11124567788888777663 1111 23566666655 45799999999
Q ss_pred HHHHHHHHh
Q 046608 227 ITGLRLYLD 235 (256)
Q Consensus 227 ~~a~~~~~~ 235 (256)
..|++.+..
T Consensus 214 ~~Ae~~l~k 222 (228)
T d1qwja_ 214 PIAEQRVLR 222 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876654
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.30 E-value=2.7e-10 Score=94.36 Aligned_cols=222 Identities=14% Similarity=0.207 Sum_probs=144.1
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee-CCcchHHHHHHHHHH----cC-CCEEEEEccCC-hHHHHHHHHhhhhccCcE
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKA----VG-VTEVVLAINYQ-PEVMLNFLKEFEKKLEIK 74 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i-~g~pli~~~l~~l~~----~~-i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~ 74 (256)
-+|+||||.||||+. ..||.++|+ .|+++++..++++.. +| --.++|.++.. ++.+.++++++ ..+++.
T Consensus 76 avv~LaGG~GTRLG~---~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~-~~fg~~ 151 (378)
T d2icya2 76 VVLKLNGGLGTTMGC---TGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKY-TNSNVD 151 (378)
T ss_dssp EEEEEECCBSGGGTC---CSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGG-TTSSSC
T ss_pred EEEEecCCcccccCC---CCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHh-ccCCCc
Confidence 368899999999976 789999999 589999999998874 23 22466666644 77888888875 334555
Q ss_pred EEeecc------------------------CCcCCCcHHHHH-----HHhhhcCCCCCcEEEEeCCeecccchHHHHHHH
Q 046608 75 ITCSQE------------------------TEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFH 125 (256)
Q Consensus 75 v~~~~~------------------------~~~~g~~~s~~~-----~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~ 125 (256)
+.+..| +.+.|+++.+.. .++.+...+-+++.+...|++....--.++..+
T Consensus 152 i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~~lG~~ 231 (378)
T d2icya2 152 IHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHL 231 (378)
T ss_dssp EEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHHHHHHH
T ss_pred eEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchHHHHHH
Confidence 544332 125566655543 244555555559999999997643335667888
Q ss_pred HhcCCceEEEEEecCCCcC-cee-EEEcCCCCeEeEEeecCCCC--------CCCeEEEEEEEeCHhhHHhcccC-C---
Q 046608 126 RGHGGEASIMVTKVDEPSK-YGV-VVMEETMGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRIELK-P--- 191 (256)
Q Consensus 126 ~~~~~~~~i~~~~~~~~~~-~~~-v~~~~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~~~~l~~~-~--- 191 (256)
..+++++++-+++...+.. -|. +..++. -+|.++.+.|... .-.+.+++..+++-++++.+.+. .
T Consensus 232 ~~~~~~~~~kvv~Kt~~dek~G~l~~~dg~-~~vvEyse~p~e~~~~~~~~~~~~~~N~nn~~~~l~~l~~~~~~~~~~l 310 (378)
T d2icya2 232 IQNKNEYCMEVTPKTLADVKGGTLISYEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADALKM 310 (378)
T ss_dssp HHHTCSEEEEEEECCTTCCSSCEEEEETTE-EEEECGGGSCGGGHHHHHSSSSCCEEEEEEEEEEHHHHHHHHHTTCCCC
T ss_pred HhcCCcceeEEEecCCCCCceeEEEEECCc-eeeeehhcCChhHHhhhcCCcCcceeeeeeeeeeHHHHHHHHhhccCCC
Confidence 8889999888877655433 333 343432 3566776666421 11267999999999888866321 0
Q ss_pred --------------CCcc---hhhHHHHHhcCcEEEEEeC-ceEEecCCHHHHHHHHH
Q 046608 192 --------------TSIE---KEVFPEIAVENKLFAMVLP-GFWMDIGQPKDYITGLR 231 (256)
Q Consensus 192 --------------~~~~---~~~~~~l~~~~~v~~~~~~-~~~~di~t~~d~~~a~~ 231 (256)
..+| .++++.. ....++.+. ..|..+-++.|++.++.
T Consensus 311 ~~~~~~K~~~~~~~iqlE~~i~d~~~~~---~~~~~~eV~R~rF~PvKn~sDll~~~s 365 (378)
T d2icya2 311 EIIPNPKEVDGVKVLQLETAAGAAIRFF---DNAIGVNVPRSRFLPVKASSDLLLVQS 365 (378)
T ss_dssp CCBCCEEEETTEEEECCBCCGGGGGGGS---TTCEEEECCGGGCCBCCSHHHHHHHHS
T ss_pred ceEecCcCCCCCCeeehhhHHHHHHHhC---CCcEEEEecccccCCCCChHHHHHHhh
Confidence 1122 2444432 233344443 36899999999986653
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=98.44 E-value=1.1e-05 Score=68.59 Aligned_cols=180 Identities=22% Similarity=0.247 Sum_probs=111.8
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee---CCcchHHHHHHHHHHc----------C-CCEEEEEccCC-hHHHHHHHHh
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAV----------G-VTEVVLAINYQ-PEVMLNFLKE 66 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i---~g~pli~~~l~~l~~~----------~-i~~i~vv~~~~-~~~i~~~~~~ 66 (256)
-+|++|||.||||+. ..||.++|+ .|+++++..++++... + .-.++|.++.. .+.+.+++++
T Consensus 104 avvllaGG~GTRLG~---~~pK~~~~v~~~~~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~~l~~ 180 (501)
T d1jv1a_ 104 AVLLLAGGQGTRLGV---AYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTK 180 (501)
T ss_dssp EEEEECCCCCCTTSC---SSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHHHHHH
T ss_pred EEEEECCCccccCCC---CCCceeeeeccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHHHHHh
Confidence 367889999999987 789999998 6899999988776552 2 12355666544 7888888886
Q ss_pred hhhccCcE---EEeecc---------------------CCcCCCcHHHHH-----HHhhhcCCCCCcEEEEeCCeecccc
Q 046608 67 FEKKLEIK---ITCSQE---------------------TEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVISEYP 117 (256)
Q Consensus 67 ~~~~~~~~---v~~~~~---------------------~~~~g~~~s~~~-----~~~~i~~~~~~~~lv~~~D~~~~~~ 117 (256)
. ..+|+. +.+..| +.+.|.++-+.. .++.+...+-+++.+...|.+.-..
T Consensus 181 ~-~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l~~~ 259 (501)
T d1jv1a_ 181 H-KYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKV 259 (501)
T ss_dssp T-GGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTTCCT
T ss_pred c-cccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCccccc
Confidence 4 223321 222222 124455443322 2333433333489999999965322
Q ss_pred h-HHHHHHHHhcCCceEEEEEecCCCc-CceeEEEcCCCCe--EeEEeecCC------CCC----CCeEEEEEEEeCHhh
Q 046608 118 L-KQMIEFHRGHGGEASIMVTKVDEPS-KYGVVVMEETMGK--VEKFVEKPK------NFV----GNKINAGIYLLNPSV 183 (256)
Q Consensus 118 ~-~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~v~~~~~~~~--v~~~~ek~~------~~~----~~~~~~Giy~~~~~~ 183 (256)
. -.++..+..++.++.+-+++..++. .-|.+... + |+ |.++.+-+. ... -...|++..+|+-++
T Consensus 260 ~Dp~~lG~~~~~~~~~~~kvv~k~~~~e~~G~l~~~-d-g~~~vvEysel~~~~~~~~~~~g~l~f~~~Ni~~~~fsl~f 337 (501)
T d1jv1a_ 260 ADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRV-D-GVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPF 337 (501)
T ss_dssp TCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEE-T-TEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEEEEEHHH
T ss_pred cCHHHHHHHHhcccceeEEEEEcCCCCcccceEEEE-C-CeEEEEEeccCCHHHHhhccCCCcccccccceeheeeEHHH
Confidence 2 4567777788899988887765543 44544332 2 44 444444321 111 125789999999988
Q ss_pred HHhc
Q 046608 184 LDRI 187 (256)
Q Consensus 184 ~~~l 187 (256)
++.+
T Consensus 338 l~~~ 341 (501)
T d1jv1a_ 338 LRDV 341 (501)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497 {Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: MM2497-like domain: Hypothetical protein MM2497 species: Methanosarcina mazei [TaxId: 2209]
Probab=97.56 E-value=0.00016 Score=54.22 Aligned_cols=103 Identities=19% Similarity=0.245 Sum_probs=59.3
Q ss_pred CeEEEEeC-C-CCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVG-G-FGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaa-G-~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~ 78 (256)
|+|||+.- + .=|||.+.-. ++.-..+ -+.|+.++++.+.+++++.+++++..... .... ....+.
T Consensus 1 m~~iiPiK~~~aKTRL~~~L~--~~~r~~L-~~~ml~~tl~~l~~~~~~~v~~vs~~~~~------~~~~--~~~~~~-- 67 (208)
T d2i5ea1 1 MRAVIPYKKAGAKSRLSPVLS--LQEREEF-VELMLNQVISSLKGAGIEQVDILSPSVYG------LEEM--TEARVL-- 67 (208)
T ss_dssp CEEEEECCCTTTTGGGTTTSC--HHHHHHH-HHHHHHHHHHHHHHTTCSEEEEEESSCTT------CSSC--CSSEEE--
T ss_pred CeEEEecCCCCCccCcCcccC--HHHHHHH-HHHHHHHHHHHHHhCCCcEEEEEcCcHHH------HHHh--hcCCcc--
Confidence 89999953 2 3456655210 0111111 13599999999999999988888854321 1111 123332
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHH
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMI 122 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~ 122 (256)
. ...|-..++..+++.- .+ +++++.+|+ +...++.+++
T Consensus 68 ~--~~~~L~~al~~a~~~~-~~---~vliig~DlP~L~~~~l~~a~ 107 (208)
T d2i5ea1 68 L--DEKDLNEALNRYLKEA-EE---PVLIVMADLPLLSPEHIKEIS 107 (208)
T ss_dssp E--CCSCHHHHHHHHHHHC-CS---CEEEECSCCTTCCHHHHHHHT
T ss_pred c--CCCCHHHHHHHHHhcC-CC---CEEEecCCcCcCCHHHHHHHH
Confidence 1 2345566777776542 22 799999999 3344566543
|
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Exostosin domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.44 E-value=0.002 Score=48.25 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=65.0
Q ss_pred CCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEE
Q 046608 29 ANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv 107 (256)
+....|.++|+.+.+.. .++++||.....+...+.+..........+++.. +..|.+.+.-.+++..+.+ .++.
T Consensus 13 n~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~--~~~g~~~a~n~~~~~a~ge---~i~~ 87 (265)
T d1omza_ 13 NRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKP--QTANKMRNRLQVFPEVETN---AVLM 87 (265)
T ss_dssp SCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEE--CSSCCGGGGGSCCTTCCSS---EEEE
T ss_pred CCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhcccceEEEEec--CCCCchhhhhhhHHhCCcC---EEEE
Confidence 34468999999998775 3556666544333222333332222234444333 3457777887888877776 8999
Q ss_pred EeCCeecccc-hHHHHHHHHhcCCceEE
Q 046608 108 LNSDVISEYP-LKQMIEFHRGHGGEASI 134 (256)
Q Consensus 108 ~~~D~~~~~~-~~~~~~~~~~~~~~~~i 134 (256)
+++|.+.+++ +.++++.+.+++...+.
T Consensus 88 lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 115 (265)
T d1omza_ 88 VDDDTLISAQDLVFAFSIWQQFPDQIIG 115 (265)
T ss_dssp ECTTEEECHHHHHHHHHHHTTSTTSEEE
T ss_pred eCcccCCCHHHHHHHHHHHHhCCCccee
Confidence 9999988766 78888888777665443
|
| >d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Spore coat polysaccharide biosynthesis protein SpsA domain: Spore coat polysaccharide biosynthesis protein SpsA species: Bacillus subtilis [TaxId: 1423]
Probab=95.98 E-value=0.091 Score=39.33 Aligned_cols=99 Identities=16% Similarity=0.111 Sum_probs=69.1
Q ss_pred CCcchHHHHHHHHHHcCC--CEEEEEccCChHHHHHHHHhhhhccCcEEEeecc------CCcCCCcHHHHHHHhhhcCC
Q 046608 29 ANKPMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE------TEPLGTAGPLALARDKLIDD 100 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i--~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~------~~~~g~~~s~~~~~~~i~~~ 100 (256)
++...|...|+.+..... -+++|+-....+...+.++++....++++.-... ....|.+.+.-.|++..+.+
T Consensus 11 N~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a~N~gi~~a~g~ 90 (255)
T d1qg8a_ 11 NKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGE 90 (255)
T ss_dssp SCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCCCS
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhcccccccccccccc
Confidence 456789999999887643 3677776666777777888776554565543211 13456666777888888766
Q ss_pred CCCcEEEEeCCeecccc-hHHHHHHHHhcCC
Q 046608 101 SGEPFFVLNSDVISEYP-LKQMIEFHRGHGG 130 (256)
Q Consensus 101 ~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~ 130 (256)
.++++.+|.++.++ +..+++.+..+..
T Consensus 91 ---~i~~lD~Dd~~~p~~l~~~~~~~~~~~~ 118 (255)
T d1qg8a_ 91 ---YITYATDDNIYMPDRLLKMVRELDTHPE 118 (255)
T ss_dssp ---EEEEEETTEEECTTHHHHHHHHHHHCTT
T ss_pred ---cccccccccccccchHHHHHHHHHhCCC
Confidence 89999999977766 7888887766543
|
| >d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.82 E-value=0.094 Score=41.00 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=65.4
Q ss_pred eeCCc--chHHHHHHHHHHcCC----CEEEEEccCC-hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcC
Q 046608 27 DFANK--PMILHQIEALKAVGV----TEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 27 ~i~g~--pli~~~l~~l~~~~i----~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~ 99 (256)
|.-|. ..|.++|+.+.+... .+|+||-... .+...+.+..+......++.+.......|.+.+.-.|+.....
T Consensus 29 p~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi~~~~n~G~~~a~N~Gi~~a~g 108 (328)
T d1xhba2 29 VFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRG 108 (328)
T ss_dssp EESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCCS
T ss_pred eccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCCCeEEEEecccccchHHHHHHHHhhhc
Confidence 33453 368888888876532 2677775433 2222233333222223334434444566888888888888877
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEE
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASI 134 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i 134 (256)
+ .++++++|.+..++ +..+++.+.+....++.
T Consensus 109 d---~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~ 141 (328)
T d1xhba2 109 Q---VITFLDAHCECTAGWLEPLLARIKHDRRTVVC 141 (328)
T ss_dssp S---EEEEEESSEEECTTCHHHHHHHHHHCTTEEEE
T ss_pred c---eeeecCcccccChhHHHHHHHHHhcCCCeEEe
Confidence 6 89999999977665 88888887777664443
|